BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042334
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EY5|A Chain A, Putative Acetyltransferase From Gnat Family From
Bacteroides Thetaiotaomicron
Length = 181
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 81 TFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNPL-RGEV 139
F NII + D P + Y D +Y +VE A L + R LC L R V
Sbjct: 49 NFHNNIIFDDDLPIGFITYWDFDEFY-YVEHFATNPALRNGGYGKRTLEHLCEFLKRPIV 107
Query: 140 LELPKPLQDCSK 151
LE+ +P+++ +K
Sbjct: 108 LEVERPVEEXAK 119
>pdb|2VXC|A Chain A, Structure Of The Crb2-Brct2 Domain Complex With
Phosphopeptide.
pdb|2VXC|B Chain B, Structure Of The Crb2-Brct2 Domain Complex With
Phosphopeptide
Length = 242
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 32 SKSWRDIIDGSLRF--ANMHMSTRLAAADEPQLLPLCNYIDAFDRKRRAALTFDGNIIKE 89
+KSW+ I+ + + A H+ LA + ++ P +++ LT DGNI+ E
Sbjct: 165 AKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLEC-----DLILTMDGNIVDE 219
Query: 90 SDCP 93
++CP
Sbjct: 220 TNCP 223
>pdb|2VXB|A Chain A, Structure Of The Crb2-Brct2 Domain
pdb|2VXB|B Chain B, Structure Of The Crb2-Brct2 Domain
Length = 241
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 32 SKSWRDIIDGSLRF--ANMHMSTRLAAADEPQLLPLCNYIDAFDRKRRAALTFDGNIIKE 89
+KSW+ I+ + + A H+ LA + ++ P +++ LT DGNI+ E
Sbjct: 164 AKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLEC-----DLILTMDGNIVDE 218
Query: 90 SDCP 93
++CP
Sbjct: 219 TNCP 222
>pdb|1XLY|A Chain A, X-Ray Structure Of The Rna-Binding Protein She2p
pdb|1XLY|B Chain B, X-Ray Structure Of The Rna-Binding Protein She2p
Length = 234
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 16 IFIR--LPVKSLMRFRSISKSWRDIIDGSL 43
IF++ LPV S F+++S +W I+DG L
Sbjct: 189 IFLQEILPVNSEEEFQTLSAAWHSILDGKL 218
>pdb|4G68|C Chain C, Biochemical And Structural Insights Into Xylan Utilization
By The Thermophilic Bacteriumcaldanaerobius
Polysaccharolyticus
Length = 432
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 122 CWAGRNKLFLCNPL--RGEVLELPKPLQDCSKDFLLPRSLTS-------YGIGFD 167
WAG P G+VL+L L D +KD LLP S + YGI FD
Sbjct: 101 TWAGG----FSQPFVEAGKVLQLDSYLNDGTKDQLLPGSFDNVTYNGKIYGIPFD 151
>pdb|4G68|B Chain B, Biochemical And Structural Insights Into Xylan Utilization
By The Thermophilic Bacteriumcaldanaerobius
Polysaccharolyticus
Length = 432
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 122 CWAGRNKLFLCNPL--RGEVLELPKPLQDCSKDFLLPRSLTS-------YGIGFD 167
WAG P G+VL+L L D +KD LLP S + YGI FD
Sbjct: 101 TWAGG----FSQPFVEAGKVLQLDSYLNDGTKDQLLPGSFDNVTYNGKIYGIPFD 151
>pdb|4G68|A Chain A, Biochemical And Structural Insights Into Xylan Utilization
By The Thermophilic Bacteriumcaldanaerobius
Polysaccharolyticus
Length = 456
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 122 CWAGRNKLFLCNPL--RGEVLELPKPLQDCSKDFLLPRSLTS-------YGIGFD 167
WAG P G+VL+L L D +KD LLP S + YGI FD
Sbjct: 125 TWAGG----FSQPFVEAGKVLQLDSYLNDGTKDQLLPGSFDNVTYNGKIYGIPFD 175
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 103 DHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNP----LRGEVLELPKPLQDCSKDFLLPRS 158
DH FV+ ++ + D WA NK+F N L + +LP+ L + L +
Sbjct: 120 DHPQAVAAFVSLTVVPILDNWAAVNKVFALNAYHWFLLAQPYDLPERLIGADPEHFLDYT 179
Query: 159 LTSYGIGFD----SATNSYKIVRLGREP 182
L G D A SY+ R R+P
Sbjct: 180 LRRMAQGRDIYHPQALESYR--RAFRDP 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,152,762
Number of Sequences: 62578
Number of extensions: 340622
Number of successful extensions: 643
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 9
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)