Query 042334
Match_columns 266
No_of_seqs 115 out of 1253
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 99.9 8.6E-24 1.9E-28 175.7 14.6 135 109-263 1-140 (230)
2 PF12937 F-box-like: F-box-lik 99.0 6.6E-10 1.4E-14 68.4 4.1 40 5-45 1-40 (47)
3 smart00256 FBOX A Receptor for 98.9 3.8E-09 8.2E-14 62.8 4.2 38 8-46 1-38 (41)
4 PF00646 F-box: F-box domain; 98.8 5.7E-09 1.2E-13 64.5 4.6 44 5-49 3-46 (48)
5 PLN03215 ascorbic acid mannose 98.8 1.2E-07 2.7E-12 82.9 14.1 38 3-40 2-40 (373)
6 PF08268 FBA_3: F-box associat 98.1 2.7E-06 5.8E-11 64.1 4.1 38 222-260 1-38 (129)
7 PHA02713 hypothetical protein; 97.9 0.0003 6.6E-09 66.0 14.7 130 109-263 347-503 (557)
8 PHA02790 Kelch-like protein; P 97.9 0.00039 8.5E-09 64.1 15.2 117 113-261 317-435 (480)
9 KOG4441 Proteins containing BT 97.9 0.00027 5.8E-09 66.4 13.4 128 109-261 423-557 (571)
10 PHA02713 hypothetical protein; 97.8 0.00037 8E-09 65.4 13.1 126 113-262 302-453 (557)
11 KOG4441 Proteins containing BT 97.7 0.0014 3E-08 61.6 15.2 124 108-257 375-506 (571)
12 PHA03098 kelch-like protein; P 97.7 0.00041 8.8E-09 64.8 11.5 111 127-261 311-426 (534)
13 PHA02790 Kelch-like protein; P 97.6 0.0014 2.9E-08 60.5 13.8 118 108-257 357-477 (480)
14 PHA03098 kelch-like protein; P 97.6 0.0033 7.2E-08 58.7 16.6 124 110-259 386-520 (534)
15 KOG2120 SCF ubiquitin ligase, 97.6 4.4E-05 9.6E-10 64.4 3.2 40 4-44 97-136 (419)
16 TIGR03548 mutarot_permut cycli 97.5 0.0029 6.4E-08 55.1 12.7 127 113-260 122-290 (323)
17 TIGR03548 mutarot_permut cycli 97.5 0.0042 9.1E-08 54.1 13.7 107 127-258 88-202 (323)
18 PLN02153 epithiospecifier prot 97.2 0.01 2.3E-07 52.1 13.6 111 127-258 159-292 (341)
19 PLN02193 nitrile-specifier pro 97.0 0.019 4.1E-07 52.9 13.9 127 113-258 227-359 (470)
20 PRK14131 N-acetylneuraminic ac 97.0 0.0079 1.7E-07 53.7 11.0 67 186-261 189-260 (376)
21 TIGR03547 muta_rot_YjhT mutatr 97.0 0.011 2.4E-07 51.9 11.4 67 186-261 168-239 (346)
22 PLN02153 epithiospecifier prot 96.9 0.014 2.9E-07 51.4 11.3 113 127-259 50-176 (341)
23 KOG2997 F-box protein FBX9 [Ge 96.8 0.0011 2.4E-08 56.3 3.2 43 6-49 108-155 (366)
24 KOG0281 Beta-TrCP (transducin 96.7 0.0011 2.4E-08 56.8 2.8 38 6-44 76-117 (499)
25 PLN02193 nitrile-specifier pro 96.7 0.042 9.1E-07 50.6 13.2 114 127-260 193-312 (470)
26 TIGR03547 muta_rot_YjhT mutatr 96.6 0.062 1.3E-06 47.2 12.9 124 113-260 16-187 (346)
27 PF13964 Kelch_6: Kelch motif 95.7 0.03 6.6E-07 34.2 4.8 39 222-260 7-47 (50)
28 PRK14131 N-acetylneuraminic ac 95.5 0.16 3.5E-06 45.3 10.5 125 113-261 37-209 (376)
29 KOG0379 Kelch repeat-containin 94.7 1.2 2.5E-05 41.3 13.9 111 127-257 139-256 (482)
30 KOG4693 Uncharacterized conser 93.6 0.29 6.4E-06 41.0 6.9 106 128-257 106-231 (392)
31 PF01344 Kelch_1: Kelch motif; 93.2 0.18 3.9E-06 30.1 3.9 36 222-257 7-43 (47)
32 PF13964 Kelch_6: Kelch motif 93.0 0.22 4.9E-06 30.3 4.2 22 126-147 27-48 (50)
33 PF07893 DUF1668: Protein of u 92.7 4.1 9E-05 35.9 13.2 134 106-263 69-223 (342)
34 PF07646 Kelch_2: Kelch motif; 92.3 0.45 9.8E-06 28.8 4.8 38 222-259 7-47 (49)
35 COG4257 Vgb Streptogramin lyas 91.3 2.1 4.6E-05 36.3 9.1 105 128-262 211-317 (353)
36 KOG4341 F-box protein containi 91.0 0.2 4.3E-06 44.7 3.0 37 7-44 74-110 (483)
37 KOG0274 Cdc4 and related F-box 88.6 0.24 5.2E-06 46.3 1.7 47 6-52 109-155 (537)
38 KOG4693 Uncharacterized conser 88.5 1.8 3.9E-05 36.5 6.4 120 125-258 42-173 (392)
39 smart00612 Kelch Kelch domain. 88.4 0.93 2E-05 26.5 3.8 22 184-205 13-35 (47)
40 PF13418 Kelch_4: Galactose ox 84.4 1.6 3.5E-05 26.2 3.3 36 222-257 7-44 (49)
41 KOG0379 Kelch repeat-containin 82.7 15 0.00033 34.0 10.4 113 128-260 89-208 (482)
42 PF13415 Kelch_3: Galactose ox 82.2 3.3 7.1E-05 24.9 4.1 23 241-263 18-41 (49)
43 PF01344 Kelch_1: Kelch motif; 79.6 1.8 3.8E-05 25.6 2.2 20 182-201 24-43 (47)
44 cd01206 Homer Homer type EVH1 77.3 6.1 0.00013 28.5 4.6 40 126-178 10-50 (111)
45 cd01207 Ena-Vasp Enabled-VASP- 75.9 11 0.00024 27.4 5.7 56 126-191 8-64 (111)
46 PF13418 Kelch_4: Galactose ox 74.7 2.3 5E-05 25.4 1.7 21 126-146 28-48 (49)
47 KOG1230 Protein containing rep 71.8 20 0.00044 32.3 7.3 72 187-266 99-178 (521)
48 PF02191 OLF: Olfactomedin-lik 69.4 25 0.00053 29.6 7.2 84 163-263 20-111 (250)
49 KOG2502 Tub family proteins [G 69.1 2.8 6.1E-05 36.5 1.6 38 3-40 43-88 (355)
50 KOG0316 Conserved WD40 repeat- 66.7 44 0.00096 27.9 7.8 70 113-201 27-100 (307)
51 PF13013 F-box-like_2: F-box-l 62.0 12 0.00026 27.1 3.4 29 5-33 22-50 (109)
52 PF13570 PQQ_3: PQQ-like domai 60.5 15 0.00033 20.8 3.2 24 222-251 17-40 (40)
53 PF13360 PQQ_2: PQQ-like domai 59.8 64 0.0014 26.0 8.0 106 113-254 35-144 (238)
54 TIGR03300 assembly_YfgL outer 59.3 1.2E+02 0.0027 26.6 10.3 51 187-252 156-210 (377)
55 smart00564 PQQ beta-propeller 59.1 24 0.00051 18.7 3.7 25 223-253 3-27 (33)
56 PRK11138 outer membrane biogen 57.5 1.4E+02 0.003 26.6 10.4 104 113-253 119-226 (394)
57 PF08450 SGL: SMP-30/Gluconola 53.7 1.2E+02 0.0027 24.7 8.9 107 113-250 10-123 (246)
58 COG4946 Uncharacterized protei 52.2 2E+02 0.0043 26.7 10.1 111 113-259 330-440 (668)
59 KOG1230 Protein containing rep 48.5 2.1E+02 0.0046 26.1 9.5 116 127-259 98-224 (521)
60 PF15408 PH_7: Pleckstrin homo 46.8 19 0.00041 24.8 2.2 24 22-46 76-99 (104)
61 TIGR03075 PQQ_enz_alc_DH PQQ-d 46.3 2.6E+02 0.0056 26.3 11.1 41 221-261 160-202 (527)
62 PF07250 Glyoxal_oxid_N: Glyox 45.2 1.8E+02 0.004 24.3 8.4 119 113-261 76-210 (243)
63 KOG2321 WD40 repeat protein [G 42.4 3.1E+02 0.0067 26.1 9.8 82 106-197 180-261 (703)
64 smart00284 OLF Olfactomedin-li 38.0 57 0.0012 27.5 4.3 35 222-261 79-114 (255)
65 cd00837 EVH1 EVH1 (Enabled, Va 37.2 1.2E+02 0.0026 21.5 5.4 54 126-192 8-62 (104)
66 TIGR03300 assembly_YfgL outer 35.6 3E+02 0.0066 24.1 10.0 26 113-141 64-89 (377)
67 PF00568 WH1: WH1 domain; Int 34.7 69 0.0015 23.0 3.8 40 126-179 15-55 (111)
68 PRK11138 outer membrane biogen 33.1 3.5E+02 0.0076 24.0 10.5 52 187-256 131-186 (394)
69 smart00135 LY Low-density lipo 30.0 97 0.0021 17.0 3.3 23 224-251 18-40 (43)
70 PF01011 PQQ: PQQ enzyme repea 29.7 82 0.0018 17.5 2.9 12 242-253 10-21 (38)
71 KOG4152 Host cell transcriptio 28.3 92 0.002 29.1 4.2 77 114-201 42-123 (830)
72 PF03088 Str_synth: Strictosid 25.6 99 0.0021 21.4 3.2 19 125-143 35-53 (89)
73 KOG3926 F-box proteins [Amino 24.9 80 0.0017 26.9 3.0 36 5-40 202-238 (332)
74 PF12768 Rax2: Cortical protei 24.6 2E+02 0.0043 24.7 5.5 66 184-259 14-81 (281)
75 PF07433 DUF1513: Protein of u 23.2 4.8E+02 0.01 22.7 7.5 84 163-261 9-96 (305)
76 PF00058 Ldl_recept_b: Low-den 22.8 1.6E+02 0.0036 16.8 3.4 26 227-256 1-26 (42)
77 COG3196 Uncharacterized protei 21.1 80 0.0017 24.1 2.1 20 2-21 78-97 (183)
78 COG4257 Vgb Streptogramin lyas 20.4 5.7E+02 0.012 22.2 8.9 148 107-262 66-230 (353)
79 KOG3545 Olfactomedin and relat 20.3 1.3E+02 0.0029 25.2 3.4 52 195-261 55-108 (249)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.91 E-value=8.6e-24 Score=175.68 Aligned_cols=135 Identities=27% Similarity=0.393 Sum_probs=100.1
Q ss_pred eccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcc
Q 042334 109 VEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNL 186 (266)
Q Consensus 109 ~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~ 186 (266)
+++ ||||||+.. ...++||||+||+++.||+++.... .. ....++||||+.+++||||++... .....
T Consensus 1 ~~s-CnGLlc~~~----~~~~~V~NP~T~~~~~LP~~~~~~~--~~---~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~ 70 (230)
T TIGR01640 1 VVP-CDGLICFSY----GKRLVVWNPSTGQSRWLPTPKSRRS--NK---ESDTYFLGYDPIEKQYKVLCFSDRSGNRNQS 70 (230)
T ss_pred Ccc-cceEEEEec----CCcEEEECCCCCCEEecCCCCCccc--cc---ccceEEEeecccCCcEEEEEEEeecCCCCCc
Confidence 468 999999886 3789999999999999997654211 11 112579999999999999999543 22457
Q ss_pred eEEEEEcCCCCccccCC-CccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeec-ccCCCCCC
Q 042334 187 EIEVYTLGTHSWRHASP-SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLN-ETPLPDFR 263 (266)
Q Consensus 187 ~~~vyss~t~~W~~~~~-p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~ 263 (266)
.++||++++++||.+.. +....... .++++||++||+ ..+. ......|++||+.+|+|+ .+++|...
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~---------~~v~~~G~lyw~~~~~~-~~~~~~IvsFDl~~E~f~~~i~~P~~~ 140 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKS---------RGVCINGVLYYLAYTLK-TNPDYFIVSFDVSSERFKEFIPLPCGN 140 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccC---------CeEEECCEEEEEEEECC-CCCcEEEEEEEcccceEeeeeecCccc
Confidence 99999999999999942 22211111 389999999999 4331 111238999999999999 58998753
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.98 E-value=6.6e-10 Score=68.39 Aligned_cols=40 Identities=28% Similarity=0.583 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHH
Q 042334 5 EVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRF 45 (266)
Q Consensus 5 ~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F 45 (266)
+..||+|++.+||.+|+++++.+++.|||+|+.++. ++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~-~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN-DNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT-CCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC-Chhh
Confidence 468999999999999999999999999999999998 6543
No 3
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.85 E-value=3.8e-09 Score=62.83 Aligned_cols=38 Identities=45% Similarity=0.871 Sum_probs=35.7
Q ss_pred CCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHH
Q 042334 8 VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFA 46 (266)
Q Consensus 8 LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~ 46 (266)
||+|++.+||.+|+++++.++++|||+|+.++. ++.|.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~-~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID-SHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-Chhhh
Confidence 799999999999999999999999999999999 77664
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.83 E-value=5.7e-09 Score=64.47 Aligned_cols=44 Identities=34% Similarity=0.557 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHHH
Q 042334 5 EVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMH 49 (266)
Q Consensus 5 ~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~~ 49 (266)
+..||+|++.+||.+|+++++.+++.|||+|+.++. +..+...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~-~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD-SPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT-THHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc-CCCccHHH
Confidence 457999999999999999999999999999999999 88876543
No 5
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.82 E-value=1.2e-07 Score=82.87 Aligned_cols=38 Identities=34% Similarity=0.516 Sum_probs=35.5
Q ss_pred CCCCCCCHHHHHHHhccCC-hhhHHHHHhhhHhHHHHhc
Q 042334 3 SSEVKVPADIVYEIFIRLP-VKSLMRFRSISKSWRDIID 40 (266)
Q Consensus 3 s~~~~LP~Dll~~IL~rLP-~~~l~r~~~VcK~Wr~~i~ 40 (266)
..|+.||+||+..|..||| .-++.|+|+|||+||+.+.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 4688999999999999998 7799999999999999987
No 6
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.14 E-value=2.7e-06 Score=64.08 Aligned_cols=38 Identities=29% Similarity=0.663 Sum_probs=32.0
Q ss_pred ceEEcCeEeeeeccCCCCCccEEEEEEcCCCeecccCCC
Q 042334 222 GLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLP 260 (266)
Q Consensus 222 ~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~lP 260 (266)
|+++||.+||+... .......|++||+++|+|+.|++|
T Consensus 1 gicinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P 38 (129)
T PF08268_consen 1 GICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLP 38 (129)
T ss_pred CEEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEee
Confidence 68999999999222 234578999999999999999998
No 7
>PHA02713 hypothetical protein; Provisional
Probab=97.94 E-value=0.0003 Score=65.95 Aligned_cols=130 Identities=8% Similarity=-0.042 Sum_probs=79.5
Q ss_pred eccccCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC---
Q 042334 109 VEFVAYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP--- 182 (266)
Q Consensus 109 ~~s~~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~--- 182 (266)
+.. .+|-|-+..+. .....+.++||.|.+|..+++++..+.. .. +..++ =+|.++....
T Consensus 347 ~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~-------~~--~~~~~-----g~IYviGG~~~~~ 411 (557)
T PHA02713 347 LAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS-------YG--MCVLD-----QYIYIIGGRTEHI 411 (557)
T ss_pred EEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc-------cc--EEEEC-----CEEEEEeCCCccc
Confidence 344 67766544432 1124688999999999999998865321 11 11221 2444442211
Q ss_pred -----------------CCcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccE
Q 042334 183 -----------------RNNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEAR 243 (266)
Q Consensus 183 -----------------~~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~ 243 (266)
.....+++|+..++.|..+ .++.... .. ..+.++|.||.+ ...........
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~---------~~~~~~~~IYv~GG~~~~~~~~~~ 481 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RP---------GVVSHKDDIYVVCDIKDEKNVKTC 481 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-cC---------cEEEECCEEEEEeCCCCCCcccee
Confidence 0135799999999999988 4443322 22 268999999999 32211111235
Q ss_pred EEEEEcCC-Ceeccc-CCCCCC
Q 042334 244 IISFDFKN-EQLNET-PLPDFR 263 (266)
Q Consensus 244 il~fD~~~-~~~~~i-~lP~~~ 263 (266)
+-+||+.+ ++|+.+ ++|..+
T Consensus 482 ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 482 IFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred EEEecCCCCCCeeEccccCccc
Confidence 78999999 799987 666543
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=97.94 E-value=0.00039 Score=64.06 Aligned_cols=117 Identities=9% Similarity=-0.015 Sum_probs=76.3
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|.|-+..+......+-.++|.+.+|..+|+++..+. ...+..+ +-+|.++.+..+....+++|+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~---------~~~~~~~-----~g~IYviGG~~~~~~~ve~yd 382 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC---------NPAVASI-----NNVIYVIGGHSETDTTTEYLL 382 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc---------ccEEEEE-----CCEEEEecCcCCCCccEEEEe
Confidence 67777555542223457788999999999999885431 1112222 235666643322345789999
Q ss_pred cCCCCcccc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCeeccc-CCCC
Q 042334 193 LGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNET-PLPD 261 (266)
Q Consensus 193 s~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~ 261 (266)
..++.|... .+|.... .. ..+.++|.||.+.. ..-+||+++++|+.+ ++|.
T Consensus 383 p~~~~W~~~~~m~~~r~-~~---------~~~~~~~~IYv~GG--------~~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 383 PNHDQWQFGPSTYYPHY-KS---------CALVFGRRLFLVGR--------NAEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred CCCCEEEeCCCCCCccc-cc---------eEEEECCEEEEECC--------ceEEecCCCCcEeEcCCCCC
Confidence 999999988 4443222 22 26789999999842 256799999999987 4443
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.89 E-value=0.00027 Score=66.38 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=87.2
Q ss_pred eccccCeEEEeeeccC----CceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee--cC
Q 042334 109 VEFVAYGLLLLQDCWA----GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR--EP 182 (266)
Q Consensus 109 ~~s~~~Glll~~~~~~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~~ 182 (266)
+.. .+|.|.+..+.. .-..+-.+||.|.+|..+|++...+. .++.+.- +-+|+++.. ..
T Consensus 423 v~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~----------~~g~a~~----~~~iYvvGG~~~~ 487 (571)
T KOG4441|consen 423 VAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS----------GFGVAVL----NGKIYVVGGFDGT 487 (571)
T ss_pred EEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc----------cceEEEE----CCEEEEECCccCC
Confidence 444 788887777541 22578889999999999999986531 1222211 345666632 22
Q ss_pred CCcceEEEEEcCCCCccccC-CCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCeecccCCCC
Q 042334 183 RNNLEIEVYTLGTHSWRHAS-PSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLPD 261 (266)
Q Consensus 183 ~~~~~~~vyss~t~~W~~~~-~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~lP~ 261 (266)
.....+|.|+..++.|..+. ++.. .... ..+.++|.+|...-.++...-..|-+||..+++|....-|.
T Consensus 488 ~~~~~VE~ydp~~~~W~~v~~m~~~-rs~~---------g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~ 557 (571)
T KOG4441|consen 488 SALSSVERYDPETNQWTMVAPMTSP-RSAV---------GVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPE 557 (571)
T ss_pred CccceEEEEcCCCCceeEcccCccc-cccc---------cEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCcc
Confidence 34556999999999999993 3322 1122 26889999999933445667789999999999999873343
No 10
>PHA02713 hypothetical protein; Provisional
Probab=97.82 E-value=0.00037 Score=65.40 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=79.9
Q ss_pred cCeEEEeeecc----CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcc
Q 042334 113 AYGLLLLQDCW----AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNL 186 (266)
Q Consensus 113 ~~Glll~~~~~----~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~ 186 (266)
.+|.|.+..+. .....+..+||.+++|..+|+++..+.. .. +..++ -||+++.+. .....
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-------~~--~~~~~-----g~IYviGG~~~~~~~~ 367 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-------FS--LAVID-----DTIYAIGGQNGTNVER 367 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-------ee--EEEEC-----CEEEEECCcCCCCCCc
Confidence 56666554432 1134688999999999999998854211 11 11221 366666432 22345
Q ss_pred eEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCC-----------------CCCccEEEEE
Q 042334 187 EIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFG-----------------SDHEARIISF 247 (266)
Q Consensus 187 ~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~-----------------~~~~~~il~f 247 (266)
.+++|+..++.|..+ ++|..... . ..+.++|.||.+ ..... ......+.+|
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~-~---------~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~Y 437 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSS-Y---------GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRY 437 (557)
T ss_pred eEEEEECCCCeEEECCCCCccccc-c---------cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEE
Confidence 799999999999988 55543322 2 267889999998 32210 0013568999
Q ss_pred EcCCCeeccc-CCCCC
Q 042334 248 DFKNEQLNET-PLPDF 262 (266)
Q Consensus 248 D~~~~~~~~i-~lP~~ 262 (266)
|+.+++|..+ ++|..
T Consensus 438 DP~td~W~~v~~m~~~ 453 (557)
T PHA02713 438 DTVNNIWETLPNFWTG 453 (557)
T ss_pred CCCCCeEeecCCCCcc
Confidence 9999999987 55443
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.72 E-value=0.0014 Score=61.59 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=82.7
Q ss_pred EeccccCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--C
Q 042334 108 FVEFVAYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--P 182 (266)
Q Consensus 108 ~~~s~~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~ 182 (266)
-+++ ++|.|-...+. ..-..+-.++|.|.+|..++++...+ .+.+.-.. +=+|.++... .
T Consensus 375 ~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r------------~~~gv~~~--~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 375 GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR------------SGHGVAVL--GGKLYIIGGGDGS 439 (571)
T ss_pred eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce------------eeeEEEEE--CCEEEEEcCcCCC
Confidence 4555 78888655543 12335778899999999999887532 12222111 2345555322 2
Q ss_pred C-CcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334 183 R-NNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET 257 (266)
Q Consensus 183 ~-~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i 257 (266)
. ....++.|+..++.|+.. +++.... .. ..+.++|.||.+ ..+. ......+-+||+.+.+|..+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~---------g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRS-GF---------GVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMV 506 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccc-cc---------eEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEc
Confidence 2 457999999999999998 5443322 22 268999999999 4332 34455699999999999998
No 12
>PHA03098 kelch-like protein; Provisional
Probab=97.71 E-value=0.00041 Score=64.81 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=72.2
Q ss_pred eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcceEEEEEcCCCCcccc-CC
Q 042334 127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLEIEVYTLGTHSWRHA-SP 203 (266)
Q Consensus 127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~~~vyss~t~~W~~~-~~ 203 (266)
..++.+||.|++|..+|+++..+. .. .. ..++ =+|+++... ......+++|+..++.|+.. ++
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~--~~-----~~--~~~~-----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l 376 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRK--NP-----GV--TVFN-----NRIYVIGGIYNSISLNTVESWKPGESKWREEPPL 376 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccc--cc-----eE--EEEC-----CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc
Confidence 368999999999999998874421 11 11 1121 235555322 22356789999999999988 55
Q ss_pred CccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCC
Q 042334 204 SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPD 261 (266)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~ 261 (266)
|... .... .+.++|.+|-+ ...........+..||+.+.+|..+ ++|.
T Consensus 377 p~~r-~~~~---------~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~ 426 (534)
T PHA03098 377 IFPR-YNPC---------VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI 426 (534)
T ss_pred CcCC-ccce---------EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc
Confidence 5322 2222 67889999998 4321111235789999999999987 4554
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=97.65 E-value=0.0014 Score=60.53 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=76.8
Q ss_pred EeccccCeEEEeeecc-CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcc
Q 042334 108 FVEFVAYGLLLLQDCW-AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNL 186 (266)
Q Consensus 108 ~~~s~~~Glll~~~~~-~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~ 186 (266)
.+.. ++|.|-+..+. .....+.++||.|.+|..+|+++..+.. . .+..++ -||+++..
T Consensus 357 ~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--------~-~~~~~~-----~~IYv~GG------ 415 (480)
T PHA02790 357 AVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--------S-CALVFG-----RRLFLVGR------ 415 (480)
T ss_pred EEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--------c-eEEEEC-----CEEEEECC------
Confidence 3445 78887655432 1224567789999999999998754211 1 111222 25666542
Q ss_pred eEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334 187 EIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET 257 (266)
Q Consensus 187 ~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i 257 (266)
.+++|+..++.|..+ ++|.. .... ..+.++|.||-+ ..+. ......+-+||+.+++|+..
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~-r~~~---------~~~v~~~~IYviGG~~~-~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYP-RDNP---------ELIIVDNKLLLIGGFYR-GSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCC-cccc---------EEEEECCEEEEECCcCC-CcccceEEEEECCCCeEEec
Confidence 378999999999988 44432 2222 278999999999 4321 12235799999999999864
No 14
>PHA03098 kelch-like protein; Provisional
Probab=97.64 E-value=0.0033 Score=58.70 Aligned_cols=124 Identities=12% Similarity=-0.114 Sum_probs=77.0
Q ss_pred ccccCeEEEeeecc----CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CC
Q 042334 110 EFVAYGLLLLQDCW----AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PR 183 (266)
Q Consensus 110 ~s~~~Glll~~~~~----~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~ 183 (266)
.. .+|-+.+..+. .....+.++||.|.+|..+++.+..+. ...+..++ + +|+.+... ..
T Consensus 386 ~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~---------~~~~~~~~----~-~iyv~GG~~~~~ 450 (534)
T PHA03098 386 VN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY---------GGCAIYHD----G-KIYVIGGISYID 450 (534)
T ss_pred EE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc---------CceEEEEC----C-EEEEECCccCCC
Confidence 44 67777665532 112568899999999999988775421 11122222 2 34444221 11
Q ss_pred ---CcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccC
Q 042334 184 ---NNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP 258 (266)
Q Consensus 184 ---~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~ 258 (266)
....+++|+..++.|+.+ ..|.. .... ..+.++|.+|.+ ... .......+..||+.+.+|..++
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~---------~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSLNFP-RINA---------SLCIFNNKIYVVGGDK-YEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCCCcc-cccc---------eEEEECCEEEEEcCCc-CCcccceeEEEeCCCCEEEecC
Confidence 134599999999999988 44432 1122 256779999998 332 1222457999999999999884
Q ss_pred C
Q 042334 259 L 259 (266)
Q Consensus 259 l 259 (266)
-
T Consensus 520 ~ 520 (534)
T PHA03098 520 K 520 (534)
T ss_pred C
Confidence 3
No 15
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=4.4e-05 Score=64.42 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH
Q 042334 4 SEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR 44 (266)
Q Consensus 4 ~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~ 44 (266)
.+.+||||+++.||+.|+.|+|.++..|||+|+++.+ +.+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~-de~ 136 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLAS-DES 136 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccc-ccc
Confidence 3688999999999999999999999999999999988 443
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.45 E-value=0.0029 Score=55.14 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=72.8
Q ss_pred cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec-CCCcceE
Q 042334 113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE-PRNNLEI 188 (266)
Q Consensus 113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~-~~~~~~~ 188 (266)
.+|.|-+.-+. .....+.++||.|.+|..+++.+... +.. . ....++ =||+++... ......+
T Consensus 122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~------~-~~~~~~-----~~iYv~GG~~~~~~~~~ 188 (323)
T TIGR03548 122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQ------P-VCVKLQ-----NELYVFGGGSNIAYTDG 188 (323)
T ss_pred ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCc------c-eEEEEC-----CEEEEEcCCCCccccce
Confidence 56666554432 12357899999999999998765321 101 1 111221 245555322 2223457
Q ss_pred EEEEcCCCCcccc-CCCcc-cc---ccchhhhccccccceEEcCeEeee-eccCC-------------------------
Q 042334 189 EVYTLGTHSWRHA-SPSSI-RL---SNNKLQLQCLSEFGLSAYGDMHWK-NWEFG------------------------- 237 (266)
Q Consensus 189 ~vyss~t~~W~~~-~~p~~-~~---~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~------------------------- 237 (266)
++|+..++.|+.+ .++.. .. .... ..+..+|.||-+ .....
T Consensus 189 ~~yd~~~~~W~~~~~~~~~~~p~~~~~~~--------~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (323)
T TIGR03548 189 YKYSPKKNQWQKVADPTTDSEPISLLGAA--------SIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYF 260 (323)
T ss_pred EEEecCCCeeEECCCCCCCCCceecccee--------EEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHh
Confidence 8999999999988 33211 11 0111 123457899988 32210
Q ss_pred ------CCCccEEEEEEcCCCeecccC-CC
Q 042334 238 ------SDHEARIISFDFKNEQLNETP-LP 260 (266)
Q Consensus 238 ------~~~~~~il~fD~~~~~~~~i~-lP 260 (266)
......+.+||+.+++|+.+. +|
T Consensus 261 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 290 (323)
T TIGR03548 261 LKPPEWYNWNRKILIYNVRTGKWKSIGNSP 290 (323)
T ss_pred CCCccccCcCceEEEEECCCCeeeEccccc
Confidence 001246999999999999884 55
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.45 E-value=0.0042 Score=54.15 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=67.9
Q ss_pred eeEEEEcccccce----eccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee--cCCCcceEEEEEcCCCCccc
Q 042334 127 NKLFLCNPLRGEV----LELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR--EPRNNLEIEVYTLGTHSWRH 200 (266)
Q Consensus 127 ~~~~V~NP~T~~~----~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~~~~~~~~~vyss~t~~W~~ 200 (266)
..++.+|+.+++| ..+|+++..+. ...+..++ -+|+++.. .......+++|+..++.|..
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~---------~~~~~~~~-----~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFE---------NGSACYKD-----GTLYVGGGNRNGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCcc---------CceEEEEC-----CEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence 5788889999887 67777764421 11122222 25555532 22234679999999999998
Q ss_pred c-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccC
Q 042334 201 A-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP 258 (266)
Q Consensus 201 ~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~ 258 (266)
+ .+|....... ..+.++|.||.+ .... .....+.+||+++++|..++
T Consensus 154 ~~~~p~~~r~~~---------~~~~~~~~iYv~GG~~~--~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 154 LPDFPGEPRVQP---------VCVKLQNELYVFGGGSN--IAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCCCCCCCCCcc---------eEEEECCEEEEEcCCCC--ccccceEEEecCCCeeEECC
Confidence 8 5554322222 256889999999 3321 11224689999999999884
No 18
>PLN02153 epithiospecifier protein
Probab=97.23 E-value=0.01 Score=52.11 Aligned_cols=111 Identities=11% Similarity=0.004 Sum_probs=65.9
Q ss_pred eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec----------CCCcceEEEEEcCCC
Q 042334 127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE----------PRNNLEIEVYTLGTH 196 (266)
Q Consensus 127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~----------~~~~~~~~vyss~t~ 196 (266)
..+.++||.|.+|..+|.......... ...+ ..++ =|+++++.. ......+++|+..++
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~~~~r~-----~~~~-~~~~-----~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~ 227 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGENFEKRG-----GAGF-AVVQ-----GKIWVVYGFATSILPGGKSDYESNAVQFFDPASG 227 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCCCCCCC-----cceE-EEEC-----CeEEEEeccccccccCCccceecCceEEEEcCCC
Confidence 368899999999999987642211111 1111 1121 134443211 011357999999999
Q ss_pred CccccC----CCccccccchhhhccccccceEEcCeEeee-eccCC--------CCCccEEEEEEcCCCeecccC
Q 042334 197 SWRHAS----PSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFG--------SDHEARIISFDFKNEQLNETP 258 (266)
Q Consensus 197 ~W~~~~----~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~--------~~~~~~il~fD~~~~~~~~i~ 258 (266)
.|..+. .|.. .... ..+.++|.||-+ ..... ......+.+||+.+.+|+.+.
T Consensus 228 ~W~~~~~~g~~P~~-r~~~---------~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 228 KWTEVETTGAKPSA-RSVF---------AHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred cEEeccccCCCCCC-ccee---------eeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 999883 2321 1122 267889999999 43210 111246899999999999773
No 19
>PLN02193 nitrile-specifier protein
Probab=97.04 E-value=0.019 Score=52.85 Aligned_cols=127 Identities=11% Similarity=0.071 Sum_probs=74.7
Q ss_pred cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee--cCCCcce
Q 042334 113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR--EPRNNLE 187 (266)
Q Consensus 113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~~~~~~~ 187 (266)
.++.|.+.-+. .....++++||.|.+|..+++.......+. . ...... +-||+++.. .......
T Consensus 227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~-----~--h~~~~~----~~~iYv~GG~~~~~~~~~ 295 (470)
T PLN02193 227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS-----F--HSMAAD----EENVYVFGGVSATARLKT 295 (470)
T ss_pred ECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc-----c--eEEEEE----CCEEEEECCCCCCCCcce
Confidence 56666555432 123578999999999999987632111001 1 112111 235666632 2223457
Q ss_pred EEEEEcCCCCccccCCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccC
Q 042334 188 IEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP 258 (266)
Q Consensus 188 ~~vyss~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~ 258 (266)
+++|+..++.|+.+..|......... ...+.++|.+|.+ ..+ . .....+..||+.+.+|+.++
T Consensus 296 ~~~yd~~t~~W~~~~~~~~~~~~R~~------~~~~~~~gkiyviGG~~-g-~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 296 LDSYNIVDKKWFHCSTPGDSFSIRGG------AGLEVVQGKVWVVYGFN-G-CEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCCCC------cEEEEECCcEEEEECCC-C-CccCceEEEECCCCEEEEec
Confidence 89999999999987433221111110 0256789999988 322 1 12357999999999999873
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.03 E-value=0.0079 Score=53.68 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccC-C-CCCccEEEEEEcCCCeeccc-CCC
Q 042334 186 LEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEF-G-SDHEARIISFDFKNEQLNET-PLP 260 (266)
Q Consensus 186 ~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~-~-~~~~~~il~fD~~~~~~~~i-~lP 260 (266)
..+++|+..++.|... .+|........ .+.+++.||.+ .... + .........||.++.+|..+ ++|
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a---------~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSA---------VVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcce---------EEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence 4689999999999988 55543222222 57789999999 4321 1 12234556778899999877 555
Q ss_pred C
Q 042334 261 D 261 (266)
Q Consensus 261 ~ 261 (266)
.
T Consensus 260 ~ 260 (376)
T PRK14131 260 P 260 (376)
T ss_pred C
Confidence 4
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.98 E-value=0.011 Score=51.94 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=42.2
Q ss_pred ceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEE--EEEEcCCCeeccc-CCC
Q 042334 186 LEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARI--ISFDFKNEQLNET-PLP 260 (266)
Q Consensus 186 ~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~i--l~fD~~~~~~~~i-~lP 260 (266)
..+++|+..++.|+.+ .+|........ .+.++|+||.+ ...........+ ..+|.++.+|..+ ++|
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSA---------IVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCce---------EEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 5799999999999998 55532222222 56889999999 432111112234 4445577799877 555
Q ss_pred C
Q 042334 261 D 261 (266)
Q Consensus 261 ~ 261 (266)
.
T Consensus 239 ~ 239 (346)
T TIGR03547 239 P 239 (346)
T ss_pred C
Confidence 4
No 22
>PLN02153 epithiospecifier protein
Probab=96.91 E-value=0.014 Score=51.39 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=67.4
Q ss_pred eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcceEEEEEcCCCCcccc-CC
Q 042334 127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLEIEVYTLGTHSWRHA-SP 203 (266)
Q Consensus 127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~~~vyss~t~~W~~~-~~ 203 (266)
..++++|+.+.+|..+++...... .. ........+ +=||+++... ......+++|+..++.|+.+ .+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~--~~---~~~~~~~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~ 119 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPR--IS---CLGVRMVAV-----GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKL 119 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCC--Cc---cCceEEEEE-----CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccC
Confidence 468999999999999886542110 00 001111111 1356666322 22335789999999999977 33
Q ss_pred -----CccccccchhhhccccccceEEcCeEeee-eccCC-----CCCccEEEEEEcCCCeecccCC
Q 042334 204 -----SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFG-----SDHEARIISFDFKNEQLNETPL 259 (266)
Q Consensus 204 -----p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~-----~~~~~~il~fD~~~~~~~~i~l 259 (266)
|.. .... ..+..+|+||.+ ..... ...-..+.+||+++.+|..++.
T Consensus 120 ~~~~~p~~-R~~~---------~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~ 176 (341)
T PLN02153 120 DEEGGPEA-RTFH---------SMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPD 176 (341)
T ss_pred CCCCCCCC-ceee---------EEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCC
Confidence 211 1122 257889999998 33211 0012368899999999998753
No 23
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.80 E-value=0.0011 Score=56.28 Aligned_cols=43 Identities=12% Similarity=0.287 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHhccCC-----hhhHHHHHhhhHhHHHHhcCCHHHHHHH
Q 042334 6 VKVPADIVYEIFIRLP-----VKSLMRFRSISKSWRDIIDGSLRFANMH 49 (266)
Q Consensus 6 ~~LP~Dll~~IL~rLP-----~~~l~r~~~VcK~Wr~~i~~s~~F~~~~ 49 (266)
..||||++.+||.++= +.+|.++.+|||.|+-.++ +++|-+..
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R-~~~lwR~a 155 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR-DPELWRLA 155 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc-ChHHHHHH
Confidence 4699999999998764 5999999999999999999 99987764
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.73 E-value=0.0011 Score=56.78 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=35.2
Q ss_pred CCCC----HHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH
Q 042334 6 VKVP----ADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR 44 (266)
Q Consensus 6 ~~LP----~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~ 44 (266)
..|| +++.+.||++|...+|..|..|||+|+++++ ++-
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~-dg~ 117 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLS-DGM 117 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhc-cch
Confidence 4588 9999999999999999999999999999999 774
No 25
>PLN02193 nitrile-specifier protein
Probab=96.70 E-value=0.042 Score=50.61 Aligned_cols=114 Identities=9% Similarity=0.037 Sum_probs=67.2
Q ss_pred eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcceEEEEEcCCCCcccc-CC
Q 042334 127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLEIEVYTLGTHSWRHA-SP 203 (266)
Q Consensus 127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~~~vyss~t~~W~~~-~~ 203 (266)
..++++|+.+.+|..+|+......... .......++ =+++++... ......+++|++.++.|+.+ ..
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~-----~~~~~v~~~-----~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~ 262 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSC-----LGVRMVSIG-----STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPV 262 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcc-----cceEEEEEC-----CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcC
Confidence 358999999999998775421100000 011111221 245555221 22345789999999999987 32
Q ss_pred Cc--cccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccCCC
Q 042334 204 SS--IRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETPLP 260 (266)
Q Consensus 204 p~--~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~lP 260 (266)
+. ...... ..+.+++.||.+ ... .......+.+||+.+.+|..++.|
T Consensus 263 ~~~P~~R~~h---------~~~~~~~~iYv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~ 312 (470)
T PLN02193 263 EEGPTPRSFH---------SMAADEENVYVFGGVS-ATARLKTLDSYNIVDKKWFHCSTP 312 (470)
T ss_pred CCCCCCccce---------EEEEECCEEEEECCCC-CCCCcceEEEEECCCCEEEeCCCC
Confidence 11 111112 256789999998 332 112235688999999999988654
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.55 E-value=0.062 Score=47.24 Aligned_cols=124 Identities=11% Similarity=0.068 Sum_probs=71.4
Q ss_pred cCeEEEeeeccCCceeEEEEcc--cccceeccCCCCC-CCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC--C----
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNP--LRGEVLELPKPLQ-DCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP--R---- 183 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP--~T~~~~~lP~~~~-~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~--~---- 183 (266)
.++-|-+..+. ....++++++ .+++|..+|+++. .+. . .. ....+ -+|+++.... .
T Consensus 16 ~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~--~-----~~--~~~~~-----~~iYv~GG~~~~~~~~~ 80 (346)
T TIGR03547 16 IGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRN--Q-----AV--AAAID-----GKLYVFGGIGKANSEGS 80 (346)
T ss_pred ECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcc--c-----ce--EEEEC-----CEEEEEeCCCCCCCCCc
Confidence 45555444321 2346777774 6789999998863 211 0 11 11121 2566663221 1
Q ss_pred --CcceEEEEEcCCCCccccCCCc-cccccchhhhccccccce-EEcCeEeee-eccCCC--------------------
Q 042334 184 --NNLEIEVYTLGTHSWRHASPSS-IRLSNNKLQLQCLSEFGL-SAYGDMHWK-NWEFGS-------------------- 238 (266)
Q Consensus 184 --~~~~~~vyss~t~~W~~~~~p~-~~~~~~~~~~~~~~~~~v-~~~G~~yw~-~~~~~~-------------------- 238 (266)
....++.|+..++.|+.+..+. ....... .+ .++|+||.+ ......
T Consensus 81 ~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~---------~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 81 PQVFDDVYRYDPKKNSWQKLDTRSPVGLLGAS---------GFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred ceecccEEEEECCCCEEecCCCCCCCccccee---------EEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 1357899999999999984221 1111111 33 689999998 332100
Q ss_pred -------------CCccEEEEEEcCCCeeccc-CCC
Q 042334 239 -------------DHEARIISFDFKNEQLNET-PLP 260 (266)
Q Consensus 239 -------------~~~~~il~fD~~~~~~~~i-~lP 260 (266)
.....+.+||+.+.+|+.+ ++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p 187 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENP 187 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCceeECccCC
Confidence 0025799999999999988 555
No 27
>PF13964 Kelch_6: Kelch motif
Probab=95.73 E-value=0.03 Score=34.25 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=30.4
Q ss_pred ceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCC
Q 042334 222 GLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLP 260 (266)
Q Consensus 222 ~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP 260 (266)
.+.++|.||.+ ...........+..||+++.+|+.+ ++|
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 68999999999 3332234567899999999999988 554
No 28
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.49 E-value=0.16 Score=45.25 Aligned_cols=125 Identities=10% Similarity=0.023 Sum_probs=69.7
Q ss_pred cCeEEEeeeccCCceeEEEEccc--ccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC--------
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPL--RGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP-------- 182 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~--T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~-------- 182 (266)
.++-|.+..+. ....++++++. +++|..+|+++.. .+ .. ... ...+ =+|+++....
T Consensus 37 ~~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~-~r-~~----~~~--v~~~-----~~IYV~GG~~~~~~~~~~ 102 (376)
T PRK14131 37 DNNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGG-PR-EQ----AVA--AFID-----GKLYVFGGIGKTNSEGSP 102 (376)
T ss_pred ECCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCC-Cc-cc----ceE--EEEC-----CEEEEEcCCCCCCCCCce
Confidence 45555444332 23456777765 5789999877531 11 10 111 1111 2455542211
Q ss_pred CCcceEEEEEcCCCCccccCC--CccccccchhhhccccccceE-EcCeEeee-eccCCC--------------------
Q 042334 183 RNNLEIEVYTLGTHSWRHASP--SSIRLSNNKLQLQCLSEFGLS-AYGDMHWK-NWEFGS-------------------- 238 (266)
Q Consensus 183 ~~~~~~~vyss~t~~W~~~~~--p~~~~~~~~~~~~~~~~~~v~-~~G~~yw~-~~~~~~-------------------- 238 (266)
.....+++|+..++.|+.+.. |... .... .+. ++|.||.+ ......
T Consensus 103 ~~~~~v~~YD~~~n~W~~~~~~~p~~~-~~~~---------~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 103 QVFDDVYKYDPKTNSWQKLDTRSPVGL-AGHV---------AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred eEcccEEEEeCCCCEEEeCCCCCCCcc-cceE---------EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 113578999999999999832 2221 1111 333 79999999 332100
Q ss_pred -------------CCccEEEEEEcCCCeeccc-CCCC
Q 042334 239 -------------DHEARIISFDFKNEQLNET-PLPD 261 (266)
Q Consensus 239 -------------~~~~~il~fD~~~~~~~~i-~lP~ 261 (266)
.....+..||+.+.+|..+ ++|.
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~ 209 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPF 209 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCC
Confidence 0125799999999999988 4553
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=94.69 E-value=1.2 Score=41.32 Aligned_cols=111 Identities=11% Similarity=0.014 Sum_probs=65.5
Q ss_pred eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--C-CCcceEEEEEcCCCCccccCC
Q 042334 127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--P-RNNLEIEVYTLGTHSWRHASP 203 (266)
Q Consensus 127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~-~~~~~~~vyss~t~~W~~~~~ 203 (266)
..+..+|+.|++|..+.+.....+.. .......++ =||+++... . +....++||+..+..|..+..
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r------~~Hs~~~~g-----~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPR------AGHSATVVG-----TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCc------ccceEEEEC-----CEEEEECCccCcccceeeeeeeccccccceeccc
Confidence 37899999999999997665421111 111222222 344554222 1 246789999999999998832
Q ss_pred Ccc---ccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334 204 SSI---RLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET 257 (266)
Q Consensus 204 p~~---~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i 257 (266)
... ...... .+.+++.++.+ ........-.-+..||+.+.+|..+
T Consensus 208 ~g~~P~pR~gH~---------~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~ 256 (482)
T KOG0379|consen 208 QGEAPSPRYGHA---------MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL 256 (482)
T ss_pred CCCCCCCCCCce---------EEEECCeEEEEeccccCCceecceEeeecccceeeec
Confidence 221 112221 45555555555 2221233455799999999999833
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=93.64 E-value=0.29 Score=41.01 Aligned_cols=106 Identities=17% Similarity=0.136 Sum_probs=65.0
Q ss_pred eEEEEcccccceecc------CCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC--CCcceEEEEEcCCCCcc
Q 042334 128 KLFLCNPLRGEVLEL------PKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP--RNNLEIEVYTLGTHSWR 199 (266)
Q Consensus 128 ~~~V~NP~T~~~~~l------P~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~--~~~~~~~vyss~t~~W~ 199 (266)
-++-++|-|.+|... |+.... .....++ +.--|+..|+++ .....+++++..|-.|+
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDG----------HsAcV~g-----n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDG----------HSACVWG-----NQMYIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred eeeeeccccccccccceeeecCCccCC----------ceeeEEC-----cEEEEecChHHHHHhhhccceeEeccceeee
Confidence 467778999988753 222111 1111222 233344444442 24457788888999999
Q ss_pred cc---CCCccccccchhhhccccccceEEcCeEeee-eccC--C------CCCccEEEEEEcCCCeeccc
Q 042334 200 HA---SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEF--G------SDHEARIISFDFKNEQLNET 257 (266)
Q Consensus 200 ~~---~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~--~------~~~~~~il~fD~~~~~~~~i 257 (266)
.+ ..|..-....+ ++..+|.+|-+ .+.+ + ..+.+.|++||++++.|..-
T Consensus 171 ~~~Tkg~PprwRDFH~---------a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 171 EMHTKGDPPRWRDFHT---------ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT 231 (392)
T ss_pred ehhccCCCchhhhhhh---------hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccC
Confidence 98 44544333333 67788999988 4432 1 24456899999999999754
No 31
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.19 E-value=0.18 Score=30.09 Aligned_cols=36 Identities=6% Similarity=0.066 Sum_probs=29.9
Q ss_pred ceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334 222 GLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET 257 (266)
Q Consensus 222 ~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i 257 (266)
.+.++|.||-+ ...........+..||+.+.+|..+
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 78999999999 4443356677999999999999987
No 32
>PF13964 Kelch_6: Kelch motif
Probab=93.03 E-value=0.22 Score=30.27 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.8
Q ss_pred ceeEEEEcccccceeccCCCCC
Q 042334 126 RNKLFLCNPLRGEVLELPKPLQ 147 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~~ 147 (266)
...+.++||.|++|..+|+++.
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCC
Confidence 5689999999999999998874
No 33
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.72 E-value=4.1 Score=35.89 Aligned_cols=134 Identities=14% Similarity=0.157 Sum_probs=72.4
Q ss_pred eEEeccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCC--
Q 042334 106 YVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPR-- 183 (266)
Q Consensus 106 ~~~~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~-- 183 (266)
+....- .+.-|++.+ .....+|+++.|+....+|.+.... .. -+.+.. + -+|+++.....
T Consensus 69 ~~F~al-~gskIv~~d---~~~~t~vyDt~t~av~~~P~l~~pk--~~-------pisv~V----G-~~LY~m~~~~~~~ 130 (342)
T PF07893_consen 69 MDFFAL-HGSKIVAVD---QSGRTLVYDTDTRAVATGPRLHSPK--RC-------PISVSV----G-DKLYAMDRSPFPE 130 (342)
T ss_pred eEEEEe-cCCeEEEEc---CCCCeEEEECCCCeEeccCCCCCCC--cc-------eEEEEe----C-CeEEEeeccCccc
Confidence 334443 455565555 3567899999999999888865321 11 122222 1 22666632211
Q ss_pred --Cc---ceEEEE--E------cCC--CCcccc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEE
Q 042334 184 --NN---LEIEVY--T------LGT--HSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISF 247 (266)
Q Consensus 184 --~~---~~~~vy--s------s~t--~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~f 247 (266)
.. ...|++ + ... -.|+.. ..|+....... .....+++|+ +|.--|++... ....-.+|
T Consensus 131 ~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~--~~~i~sYavv-~g~~I~vS~~~---~~~GTysf 204 (342)
T PF07893_consen 131 PAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYS--DYRITSYAVV-DGRTIFVSVNG---RRWGTYSF 204 (342)
T ss_pred cccCccceeEEEeccccccccccCCCcceEEcCCCCCccccCCcc--cceEEEEEEe-cCCeEEEEecC---CceEEEEE
Confidence 10 044444 4 122 356666 33333222110 0002235677 99888983330 01369999
Q ss_pred EcCCCeeccc---CCCCCC
Q 042334 248 DFKNEQLNET---PLPDFR 263 (266)
Q Consensus 248 D~~~~~~~~i---~lP~~~ 263 (266)
|+.+.+|+.+ .||..+
T Consensus 205 Dt~~~~W~~~GdW~LPF~G 223 (342)
T PF07893_consen 205 DTESHEWRKHGDWMLPFHG 223 (342)
T ss_pred EcCCcceeeccceecCcCC
Confidence 9999999988 888765
No 34
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.32 E-value=0.45 Score=28.82 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=30.8
Q ss_pred ceEEcCeEeee-ec--cCCCCCccEEEEEEcCCCeecccCC
Q 042334 222 GLSAYGDMHWK-NW--EFGSDHEARIISFDFKNEQLNETPL 259 (266)
Q Consensus 222 ~v~~~G~~yw~-~~--~~~~~~~~~il~fD~~~~~~~~i~l 259 (266)
.+.++|+||.. .. ........-+..||+++.+|+.++.
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 78999999999 44 3445667789999999999998854
No 35
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.34 E-value=2.1 Score=36.26 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=67.4
Q ss_pred eEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEEcCCCCccccCCCccc
Q 042334 128 KLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIR 207 (266)
Q Consensus 128 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~t~~W~~~~~p~~~ 207 (266)
.+.-.||.++.-..+|.+..... ..-.+..|+... +.+. ....-.+.-|+..+.+|.+-.+|..-
T Consensus 211 aiaridp~~~~aev~p~P~~~~~---------gsRriwsdpig~----~wit--twg~g~l~rfdPs~~sW~eypLPgs~ 275 (353)
T COG4257 211 AIARIDPFAGHAEVVPQPNALKA---------GSRRIWSDPIGR----AWIT--TWGTGSLHRFDPSVTSWIEYPLPGSK 275 (353)
T ss_pred ceEEcccccCCcceecCCCcccc---------cccccccCccCc----EEEe--ccCCceeeEeCcccccceeeeCCCCC
Confidence 45556999997777777654211 111344444311 2222 12355778899999899998777654
Q ss_pred cccchhhhccccccceEEcC-eEeee-eccCCCCCccEEEEEEcCCCeecccCCCCC
Q 042334 208 LSNNKLQLQCLSEFGLSAYG-DMHWK-NWEFGSDHEARIISFDFKNEQLNETPLPDF 262 (266)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~G-~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~lP~~ 262 (266)
.... .+++|. -.-|+ ..+ ...|+.||.++++|+++++|..
T Consensus 276 arpy----------s~rVD~~grVW~sea~-----agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 276 ARPY----------SMRVDRHGRVWLSEAD-----AGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred CCcc----------eeeeccCCcEEeeccc-----cCceeecCcccceEEEecCCCC
Confidence 3332 455553 45677 333 6799999999999999988864
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.03 E-value=0.2 Score=44.67 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=34.2
Q ss_pred CCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH
Q 042334 7 KVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR 44 (266)
Q Consensus 7 ~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~ 44 (266)
.||.|++.+||+.|..+++.|++.+||.|+.... |..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~Al-D~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLAL-DGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-ccc
Confidence 5999999999999999999999999999999887 543
No 37
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.62 E-value=0.24 Score=46.31 Aligned_cols=47 Identities=17% Similarity=0.404 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHHHHhc
Q 042334 6 VKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMST 52 (266)
Q Consensus 6 ~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~~~~~ 52 (266)
..||.++...||..|+.+++.+++.||+.|+.++.++..-.+.+...
T Consensus 109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~ 155 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCREL 155 (537)
T ss_pred hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhh
Confidence 46999999999999999999999999999999999444444344333
No 38
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=88.47 E-value=1.8 Score=36.50 Aligned_cols=120 Identities=12% Similarity=0.077 Sum_probs=66.7
Q ss_pred CceeEEEEcccccceeccCCCCCC--CCCCCc-CCC-CcceeeeeecCCCCCeEEEEEeec--CCCcceEEEEEcCCCCc
Q 042334 125 GRNKLFLCNPLRGEVLELPKPLQD--CSKDFL-LPR-SLTSYGIGFDSATNSYKIVRLGRE--PRNNLEIEVYTLGTHSW 198 (266)
Q Consensus 125 ~~~~~~V~NP~T~~~~~lP~~~~~--~~~~~~-~~~-~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~~~vyss~t~~W 198 (266)
..-.+-|.|-.+-+|..+|+.-.. ....+. .|- .+......|+. -..+...+. .+..-....|+.+++.|
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d----~~yvWGGRND~egaCN~Ly~fDp~t~~W 117 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD----KAYVWGGRNDDEGACNLLYEFDPETNVW 117 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc----eEEEEcCccCcccccceeeeeccccccc
Confidence 455788889999999999884322 111111 000 01111112211 112222222 23455777899999999
Q ss_pred cccCC----CccccccchhhhccccccceEEcCeEeee--eccCCCCCccEEEEEEcCCCeecccC
Q 042334 199 RHASP----SSIRLSNNKLQLQCLSEFGLSAYGDMHWK--NWEFGSDHEARIISFDFKNEQLNETP 258 (266)
Q Consensus 199 ~~~~~----p~~~~~~~~~~~~~~~~~~v~~~G~~yw~--~~~~~~~~~~~il~fD~~~~~~~~i~ 258 (266)
+..+. |.... ..+ +.+.+..+|-+ .+++-.....-+..+|+.+.+|+.+.
T Consensus 118 ~~p~v~G~vPgaRD-GHs---------AcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~ 173 (392)
T KOG4693|consen 118 KKPEVEGFVPGARD-GHS---------ACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMH 173 (392)
T ss_pred cccceeeecCCccC-Cce---------eeEECcEEEEecChHHHHHhhhccceeEeccceeeeehh
Confidence 98733 32211 222 56667777777 33322233456899999999999983
No 39
>smart00612 Kelch Kelch domain.
Probab=88.39 E-value=0.93 Score=26.49 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.5
Q ss_pred CcceEEEEEcCCCCcccc-CCCc
Q 042334 184 NNLEIEVYTLGTHSWRHA-SPSS 205 (266)
Q Consensus 184 ~~~~~~vyss~t~~W~~~-~~p~ 205 (266)
....+++|+..++.|+.. ++|.
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeeeEEEECCCCCeEccCCCCCC
Confidence 356789999999999988 5443
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=84.41 E-value=1.6 Score=26.17 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=21.2
Q ss_pred ceEE-cCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334 222 GLSA-YGDMHWK-NWEFGSDHEARIISFDFKNEQLNET 257 (266)
Q Consensus 222 ~v~~-~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i 257 (266)
.+.+ ++.+|-. ..+.....-.-+..||+++.+|+.+
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 4455 4777777 3332112344688999999999988
No 41
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=82.74 E-value=15 Score=33.99 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=62.9
Q ss_pred eEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-ec--CCCcceEEEEEcCCCCccccC--
Q 042334 128 KLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-RE--PRNNLEIEVYTLGTHSWRHAS-- 202 (266)
Q Consensus 128 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~--~~~~~~~~vyss~t~~W~~~~-- 202 (266)
.++|+|--++.|......-........ .....++ =+++.+. .. ......+.+|+..|+.|+...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g----~~~~~~~-------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~ 157 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYG----HSLSAVG-------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPT 157 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccc----eeEEEEC-------CeEEEEccccCCCCChhheEeccCCCCcEEEecCc
Confidence 589999888777655443322111111 1111222 3444442 22 223458889999999999882
Q ss_pred -CCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccCCC
Q 042334 203 -PSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETPLP 260 (266)
Q Consensus 203 -~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~lP 260 (266)
.+.......+ .+.++-.+|.. ..+.....-+-+.+||+++.+|..+...
T Consensus 158 ~~~P~~r~~Hs---------~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~ 208 (482)
T KOG0379|consen 158 GDPPPPRAGHS---------ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQ 208 (482)
T ss_pred CCCCCCcccce---------EEEECCEEEEECCccCcccceeeeeeeccccccceecccC
Confidence 2122122222 44555566666 3332222466899999999999988443
No 42
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=82.19 E-value=3.3 Score=24.88 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=18.1
Q ss_pred ccEEEEEEcCCCeeccc-CCCCCC
Q 042334 241 EARIISFDFKNEQLNET-PLPDFR 263 (266)
Q Consensus 241 ~~~il~fD~~~~~~~~i-~lP~~~ 263 (266)
..-+.+||+.+.+|+.+ ++|..|
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCc
Confidence 45689999999999988 555543
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=79.63 E-value=1.8 Score=25.62 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=17.1
Q ss_pred CCCcceEEEEEcCCCCcccc
Q 042334 182 PRNNLEIEVYTLGTHSWRHA 201 (266)
Q Consensus 182 ~~~~~~~~vyss~t~~W~~~ 201 (266)
......+++|+..++.|+..
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEE
T ss_pred CceeeeEEEEeCCCCEEEEc
Confidence 34678999999999999876
No 44
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=77.31 E-value=6.1 Score=28.46 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=30.5
Q ss_pred ceeEEEEccccc-ceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEE
Q 042334 126 RNKLFLCNPLRG-EVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRL 178 (266)
Q Consensus 126 ~~~~~V~NP~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~ 178 (266)
...++++||.|+ .| +|..+. ...+.+-+|+..+.|+||.+
T Consensus 10 rA~V~~yd~~tKk~W--vPs~~~-----------~~~V~~y~~~~~ntfRIi~~ 50 (111)
T cd01206 10 RAHVFQIDPKTKKNW--IPASKH-----------AVTVSYFYDSTRNVYRIISV 50 (111)
T ss_pred eeEEEEECCCCccee--EeCCCC-----------ceeEEEEecCCCcEEEEEEe
Confidence 567999999986 55 455542 24567889999999999997
No 45
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=75.94 E-value=11 Score=27.40 Aligned_cols=56 Identities=9% Similarity=0.173 Sum_probs=35.3
Q ss_pred ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-ecCCCcceEEEE
Q 042334 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-REPRNNLEIEVY 191 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~~~~~~vy 191 (266)
...+++.||.|+.|. |.....+ ....+.+-+++..+.|+|+..- .+......+++|
T Consensus 8 rA~Vm~~d~~tk~W~--P~~~~~~--------~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~ 64 (111)
T cd01207 8 RASVMVYDDSNKKWV--PAGGGSQ--------GFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIV 64 (111)
T ss_pred EEEeeEEcCCCCcEE--cCCCCCC--------CcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEec
Confidence 457899999999854 5433110 1345567788888899999873 222234455554
No 46
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=74.69 E-value=2.3 Score=25.44 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=14.1
Q ss_pred ceeEEEEcccccceeccCCCC
Q 042334 126 RNKLFLCNPLRGEVLELPKPL 146 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~ 146 (266)
...++++|+.|++|..||++|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 347899999999999998776
No 47
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=71.79 E-value=20 Score=32.30 Aligned_cols=72 Identities=17% Similarity=0.328 Sum_probs=43.1
Q ss_pred eEEEEEcCCCCccccCCCccccccchhhhccccccceEEc-CeEeee-eccCCC------CCccEEEEEEcCCCeecccC
Q 042334 187 EIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAY-GDMHWK-NWEFGS------DHEARIISFDFKNEQLNETP 258 (266)
Q Consensus 187 ~~~vyss~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~~~-G~~yw~-~~~~~~------~~~~~il~fD~~~~~~~~i~ 258 (266)
....|+...+.|+.+..|.......+. +.|.+- | +-|+ .-++-+ .+-.-+..||+.+.+|..|.
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRssh-------q~va~~s~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSH-------QAVAVPSN-ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccc-------eeEEeccC-eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 456788899999988333221111110 134444 6 5555 444321 22235889999999999998
Q ss_pred CCCCCCCC
Q 042334 259 LPDFRMPR 266 (266)
Q Consensus 259 lP~~~~~~ 266 (266)
++.+-.+|
T Consensus 171 ~~g~PS~R 178 (521)
T KOG1230|consen 171 FGGGPSPR 178 (521)
T ss_pred cCCCCCCC
Confidence 77665554
No 48
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=69.40 E-value=25 Score=29.59 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=51.4
Q ss_pred eeeecCC-CCCeEEEEEeecCCCcceEEEEEcCCC-----Ccccc-CCCccccccchhhhccccccceEEcCeEeeeecc
Q 042334 163 GIGFDSA-TNSYKIVRLGREPRNNLEIEVYTLGTH-----SWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWE 235 (266)
Q Consensus 163 ~l~~d~~-~~~ykvv~~~~~~~~~~~~~vyss~t~-----~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~ 235 (266)
+.+-|+. .+.=|+.++.... ...+..|.+.+. .+... .+|.... +. ..|+.||.+|.-..+
T Consensus 20 aWmrD~~~~~~~~iy~~~~~~--~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~-Gt---------G~vVYngslYY~~~~ 87 (250)
T PF02191_consen 20 AWMRDPSPSDSEKIYVTSGFS--GNTVYEYRNYEDFLRNGRSSRTYKLPYPWQ-GT---------GHVVYNGSLYYNKYN 87 (250)
T ss_pred EEEeCCCCCCCCCEEEECccC--CCEEEEEcCHhHHhhcCCCceEEEEeceec-cC---------CeEEECCcEEEEecC
Confidence 5667777 4555555552221 115566654432 23222 4443222 22 268899999999555
Q ss_pred CCCCCccEEEEEEcCCCeec-ccCCCCCC
Q 042334 236 FGSDHEARIISFDFKNEQLN-ETPLPDFR 263 (266)
Q Consensus 236 ~~~~~~~~il~fD~~~~~~~-~i~lP~~~ 263 (266)
...|+.||+.+++.. ...||..+
T Consensus 88 -----s~~IvkydL~t~~v~~~~~L~~A~ 111 (250)
T PF02191_consen 88 -----SRNIVKYDLTTRSVVARRELPGAG 111 (250)
T ss_pred -----CceEEEEECcCCcEEEEEECCccc
Confidence 568999999999888 77887653
No 49
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=69.15 E-value=2.8 Score=36.49 Aligned_cols=38 Identities=16% Similarity=0.427 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHhccCCh--------hhHHHHHhhhHhHHHHhc
Q 042334 3 SSEVKVPADIVYEIFIRLPV--------KSLMRFRSISKSWRDIID 40 (266)
Q Consensus 3 s~~~~LP~Dll~~IL~rLP~--------~~l~r~~~VcK~Wr~~i~ 40 (266)
+.++.||.+++.+|+.|..- +..+.++.||+.||.+..
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~ 88 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISK 88 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcc
Confidence 46778999999999999862 368899999999999866
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=66.74 E-value=44 Score=27.90 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=38.6
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|--|+..+ .++.+-+|||..+.... ... .++.. ...++..+|. -|+... +....+++++
T Consensus 27 ~dGnY~ltcG--sdrtvrLWNp~rg~lik--tYs---ghG~E----VlD~~~s~Dn----skf~s~----GgDk~v~vwD 87 (307)
T KOG0316|consen 27 VDGNYCLTCG--SDRTVRLWNPLRGALIK--TYS---GHGHE----VLDAALSSDN----SKFASC----GGDKAVQVWD 87 (307)
T ss_pred cCCCEEEEcC--CCceEEeecccccceee--eec---CCCce----eeeccccccc----cccccC----CCCceEEEEE
Confidence 5666666664 68889999999875432 111 11111 1222333333 333222 2466888999
Q ss_pred cCCC----Ccccc
Q 042334 193 LGTH----SWRHA 201 (266)
Q Consensus 193 s~t~----~W~~~ 201 (266)
.+|| .|+-.
T Consensus 88 V~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 88 VNTGKVDRRFRGH 100 (307)
T ss_pred cccCeeeeecccc
Confidence 9886 46554
No 51
>PF13013 F-box-like_2: F-box-like domain
Probab=62.03 E-value=12 Score=27.13 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHhccCChhhHHHHHhhhH
Q 042334 5 EVKVPADIVYEIFIRLPVKSLMRFRSISK 33 (266)
Q Consensus 5 ~~~LP~Dll~~IL~rLP~~~l~r~~~VcK 33 (266)
..+||+||+..|+..-....+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 45699999999999999888877666666
No 52
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=60.54 E-value=15 Score=20.78 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=17.4
Q ss_pred ceEEcCeEeeeeccCCCCCccEEEEEEcCC
Q 042334 222 GLSAYGDMHWKNWEFGSDHEARIISFDFKN 251 (266)
Q Consensus 222 ~v~~~G~~yw~~~~~~~~~~~~il~fD~~~ 251 (266)
+++.+|.+|....+ ..|.+||.++
T Consensus 17 ~~v~~g~vyv~~~d------g~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGD------GNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TT------SEEEEEETT-
T ss_pred CEEECCEEEEEcCC------CEEEEEeCCC
Confidence 78889999998443 3899999874
No 53
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=59.84 E-value=64 Score=25.95 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=55.4
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|.+++.. ....++.+|+.||+...-...+.. .. .. +...+-+|++... .-.+..++
T Consensus 35 ~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~----~~-----~~------~~~~~~~v~v~~~----~~~l~~~d 92 (238)
T PF13360_consen 35 DGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGP----IS-----GA------PVVDGGRVYVGTS----DGSLYALD 92 (238)
T ss_dssp ETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSC----GG-----SG------EEEETTEEEEEET----TSEEEEEE
T ss_pred eCCEEEEEc---CCCEEEEEECCCCCEEEEeecccc----cc-----ce------eeecccccccccc----eeeeEecc
Confidence 577777775 588899999999986654433211 00 00 1111233333331 12666677
Q ss_pred cCCC--Cccc-c-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCee
Q 042334 193 LGTH--SWRH-A-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQL 254 (266)
Q Consensus 193 s~t~--~W~~-~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~ 254 (266)
..++ .|+. . ..+........ ...+.++.+|....+ ..|.++|+++.+-
T Consensus 93 ~~tG~~~W~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~------g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSSPPAGVRSSS--------SPAVDGDRLYVGTSS------GKLVALDPKTGKL 144 (238)
T ss_dssp TTTSCEEEEEEE-SSCTCSTB--S--------EEEEETTEEEEEETC------SEEEEEETTTTEE
T ss_pred cCCcceeeeecccccccccccccc--------CceEecCEEEEEecc------CcEEEEecCCCcE
Confidence 6554 6884 3 22322111111 133345566666422 3799999886643
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=59.29 E-value=1.2e+02 Score=26.55 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=29.6
Q ss_pred eEEEEEcCCC--Ccccc-CCCc-cccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC
Q 042334 187 EIEVYTLGTH--SWRHA-SPSS-IRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE 252 (266)
Q Consensus 187 ~~~vyss~t~--~W~~~-~~p~-~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~ 252 (266)
.+..++..++ .|+.. ..+. ...... .++..+|.+|.-..+ ..+.++|..++
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~---------sp~~~~~~v~~~~~~------g~v~ald~~tG 210 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALTLRGSA---------SPVIADGGVLVGFAG------GKLVALDLQTG 210 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCceeecCCC---------CCEEECCEEEEECCC------CEEEEEEccCC
Confidence 4666776665 57755 2221 111112 267788877765332 37999998765
No 55
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=59.05 E-value=24 Score=18.68 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=17.2
Q ss_pred eEEcCeEeeeeccCCCCCccEEEEEEcCCCe
Q 042334 223 LSAYGDMHWKNWEFGSDHEARIISFDFKNEQ 253 (266)
Q Consensus 223 v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~ 253 (266)
+..+|.+|....+ ..|.++|.++.+
T Consensus 3 ~~~~~~v~~~~~~------g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTD------GTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCC------CEEEEEEcccCc
Confidence 4567788877322 489999997653
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=57.54 E-value=1.4e+02 Score=26.59 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=55.6
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|.|.+.. ....++.+|+.||+.++--...... .. . .+.. ++ +|++... .-.+..++
T Consensus 119 ~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~---~s------s-P~v~----~~-~v~v~~~----~g~l~ald 176 (394)
T PRK11138 119 AGGKVYIGS---EKGQVYALNAEDGEVAWQTKVAGEA---LS------R-PVVS----DG-LVLVHTS----NGMLQALN 176 (394)
T ss_pred ECCEEEEEc---CCCEEEEEECCCCCCcccccCCCce---ec------C-CEEE----CC-EEEEECC----CCEEEEEE
Confidence 466666655 4667888999998765532222110 00 0 0111 12 2333221 22567777
Q ss_pred cCCC--Ccccc-CCCcc-ccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCe
Q 042334 193 LGTH--SWRHA-SPSSI-RLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQ 253 (266)
Q Consensus 193 s~t~--~W~~~-~~p~~-~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~ 253 (266)
..++ .|+.. ..|.. ..... .++..+|.+|+...+ ..+.++|..+.+
T Consensus 177 ~~tG~~~W~~~~~~~~~~~~~~~---------sP~v~~~~v~~~~~~------g~v~a~d~~~G~ 226 (394)
T PRK11138 177 ESDGAVKWTVNLDVPSLTLRGES---------APATAFGGAIVGGDN------GRVSAVLMEQGQ 226 (394)
T ss_pred ccCCCEeeeecCCCCcccccCCC---------CCEEECCEEEEEcCC------CEEEEEEccCCh
Confidence 7665 58776 33321 11112 277888888886322 368999987653
No 57
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=53.68 E-value=1.2e+02 Score=24.73 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=57.5
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|-|.+.+. ...+++.++|.+++...+.... ..++.++... . ++++.. .....+++
T Consensus 10 ~~g~l~~~D~--~~~~i~~~~~~~~~~~~~~~~~--------------~~G~~~~~~~-g-~l~v~~-----~~~~~~~d 66 (246)
T PF08450_consen 10 RDGRLYWVDI--PGGRIYRVDPDTGEVEVIDLPG--------------PNGMAFDRPD-G-RLYVAD-----SGGIAVVD 66 (246)
T ss_dssp TTTEEEEEET--TTTEEEEEETTTTEEEEEESSS--------------EEEEEEECTT-S-EEEEEE-----TTCEEEEE
T ss_pred CCCEEEEEEc--CCCEEEEEECCCCeEEEEecCC--------------CceEEEEccC-C-EEEEEE-----cCceEEEe
Confidence 4666766664 5778999999999876543332 2356666322 2 222222 33456678
Q ss_pred cCCCCcccc-CCCc---cccccchhhhccccccceEEcCeEeeeecc-CCCCCc--cEEEEEEcC
Q 042334 193 LGTHSWRHA-SPSS---IRLSNNKLQLQCLSEFGLSAYGDMHWKNWE-FGSDHE--ARIISFDFK 250 (266)
Q Consensus 193 s~t~~W~~~-~~p~---~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~-~~~~~~--~~il~fD~~ 250 (266)
..++.++.. ..+. .....+ ...+--+|.+|..... ...... ..|..++..
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~N--------D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 67 PDTGKVTVLADLPDGGVPFNRPN--------DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp TTTTEEEEEEEEETTCSCTEEEE--------EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred cCCCcEEEEeeccCCCcccCCCc--------eEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 888888776 3211 111111 1244556787776332 211111 568888887
No 58
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=52.23 E-value=2e+02 Score=26.73 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=63.0
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|-..... ..++.+|.||--+...+++...-. ....++.|+. ++|....+ ...+.||+
T Consensus 330 ~~Gd~ia~V---SRGkaFi~~~~~~~~iqv~~~~~V-----------rY~r~~~~~e----~~vigt~d---gD~l~iyd 388 (668)
T COG4946 330 VNGDYIALV---SRGKAFIMRPWDGYSIQVGKKGGV-----------RYRRIQVDPE----GDVIGTND---GDKLGIYD 388 (668)
T ss_pred CCCcEEEEE---ecCcEEEECCCCCeeEEcCCCCce-----------EEEEEccCCc----ceEEeccC---CceEEEEe
Confidence 455554444 367889999988877777655421 1223444442 33333222 34789999
Q ss_pred cCCCCccccCCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCeecccCC
Q 042334 193 LGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPL 259 (266)
Q Consensus 193 s~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~l 259 (266)
.+++.=+....+...- .. ..+.-+|+.-.+..+ ...|+.+|+++++-++|.-
T Consensus 389 ~~~~e~kr~e~~lg~I-~a---------v~vs~dGK~~vvaNd-----r~el~vididngnv~~idk 440 (668)
T COG4946 389 KDGGEVKRIEKDLGNI-EA---------VKVSPDGKKVVVAND-----RFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred cCCceEEEeeCCccce-EE---------EEEcCCCcEEEEEcC-----ceEEEEEEecCCCeeEecc
Confidence 9988766663222111 11 256666765555222 3468888888777776643
No 59
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=48.52 E-value=2.1e+02 Score=26.09 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=57.6
Q ss_pred eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe----ecCC-C----cceEEEEEcCCCC
Q 042334 127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG----REPR-N----NLEIEVYTLGTHS 197 (266)
Q Consensus 127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~----~~~~-~----~~~~~vyss~t~~ 197 (266)
..+|++|--+.+|+.+-.+....++.- .....-+.. ++.++ .++. . -....+|+..++.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRss--------hq~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk 165 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSS--------HQAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK 165 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCcc--------ceeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccch
Confidence 468899999999988743322211111 122222321 22231 2221 1 1256689999999
Q ss_pred ccccCCCcccc--ccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCeecccCC
Q 042334 198 WRHASPSSIRL--SNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPL 259 (266)
Q Consensus 198 W~~~~~p~~~~--~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~l 259 (266)
|..+..+.... ... ++...+. +-+..+| +|=...+ -.+-+-+.+||+++=+|+.+..
T Consensus 166 weql~~~g~PS~RSGH-RMvawK~-~lilFGG-Fhd~nr~--y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 166 WEQLEFGGGPSPRSGH-RMVAWKR-QLILFGG-FHDSNRD--YIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred heeeccCCCCCCCccc-eeEEeee-eEEEEcc-eecCCCc--eEEeeeeEEEeccceeeeeccC
Confidence 99983332211 111 1111110 1222222 3322111 1223458999999999998865
No 60
>PF15408 PH_7: Pleckstrin homology domain
Probab=46.84 E-value=19 Score=24.75 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=20.3
Q ss_pred hhhHHHHHhhhHhHHHHhcCCHHHH
Q 042334 22 VKSLMRFRSISKSWRDIIDGSLRFA 46 (266)
Q Consensus 22 ~~~l~r~~~VcK~Wr~~i~~s~~F~ 46 (266)
++-.+..+-|||+|-.... +|+|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN-~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMN-SPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhc-Chhhh
Confidence 4566778899999999999 99874
No 61
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=46.31 E-value=2.6e+02 Score=26.32 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=26.1
Q ss_pred cceEEcCeEeeeeccCCCCCccEEEEEEcCCC--eecccCCCC
Q 042334 221 FGLSAYGDMHWKNWEFGSDHEARIISFDFKNE--QLNETPLPD 261 (266)
Q Consensus 221 ~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~--~~~~i~lP~ 261 (266)
.+++.+|.+|.-....+......|.+||.++. .|+.-.+|.
T Consensus 160 sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 160 APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred CcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence 38899999888632211123468999999765 565544443
No 62
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=45.16 E-value=1.8e+02 Score=24.29 Aligned_cols=119 Identities=16% Similarity=0.156 Sum_probs=60.7
Q ss_pred cCeEEEeeecc-CCceeEEEEcccc----cceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcce
Q 042334 113 AYGLLLLQDCW-AGRNKLFLCNPLR----GEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLE 187 (266)
Q Consensus 113 ~~Glll~~~~~-~~~~~~~V~NP~T----~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~ 187 (266)
.||-++..-++ .....+.+++|.+ ..|.+.+.. ....++|. ...-|. +=+|+.+.... ...
T Consensus 76 ~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-m~~~RWYp-----T~~~L~------DG~vlIvGG~~--~~t 141 (243)
T PF07250_consen 76 PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-MQSGRWYP-----TATTLP------DGRVLIVGGSN--NPT 141 (243)
T ss_pred CCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-ccCCCccc-----cceECC------CCCEEEEeCcC--CCc
Confidence 35666655443 3345678889986 667776654 33334443 222232 33566654332 455
Q ss_pred EEEEEcCCCCccccCCC---------ccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCee-ccc
Q 042334 188 IEVYTLGTHSWRHASPS---------SIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQL-NET 257 (266)
Q Consensus 188 ~~vyss~t~~W~~~~~p---------~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~-~~i 257 (266)
+|.+............+ .....+.. -+.-+|.+++.... .-+.||..+.+. +.+
T Consensus 142 ~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~---------~llPdG~lFi~an~-------~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 142 YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFV---------HLLPDGNLFIFANR-------GSIIYDYKTNTVVRTL 205 (243)
T ss_pred ccccCCccCCCCceeeecchhhhccCccccCceE---------EEcCCCCEEEEEcC-------CcEEEeCCCCeEEeeC
Confidence 67666533221111111 11112221 46778999998333 244568887765 444
Q ss_pred -CCCC
Q 042334 258 -PLPD 261 (266)
Q Consensus 258 -~lP~ 261 (266)
.+|.
T Consensus 206 P~lPg 210 (243)
T PF07250_consen 206 PDLPG 210 (243)
T ss_pred CCCCC
Confidence 4553
No 63
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=42.37 E-value=3.1e+02 Score=26.13 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=45.1
Q ss_pred eEEeccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCc
Q 042334 106 YVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNN 185 (266)
Q Consensus 106 ~~~~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~ 185 (266)
..-+.. +||||++-. ..+.+-.|+|-++..+..-...........-.....+.++.|+.. .-.+.+... .
T Consensus 180 ~v~in~-~hgLla~Gt---~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVGts----~ 249 (703)
T KOG2321|consen 180 VVSINE-EHGLLACGT---EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVGTS----T 249 (703)
T ss_pred eeeecC-ccceEEecc---cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC--ceeEEeecc----C
Confidence 344678 999999887 588889999998876544322222110000001123445555442 233333222 3
Q ss_pred ceEEEEEcCCCC
Q 042334 186 LEIEVYTLGTHS 197 (266)
Q Consensus 186 ~~~~vyss~t~~ 197 (266)
-.+.||++.+..
T Consensus 250 G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 250 GSVLIYDLRASK 261 (703)
T ss_pred CcEEEEEcccCC
Confidence 367888888754
No 64
>smart00284 OLF Olfactomedin-like domains.
Probab=38.03 E-value=57 Score=27.53 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=27.8
Q ss_pred ceEEcCeEeeeeccCCCCCccEEEEEEcCCCeeccc-CCCC
Q 042334 222 GLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNET-PLPD 261 (266)
Q Consensus 222 ~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~ 261 (266)
.|+.||.+|.-..+ ...|+.||+.+++.... .||.
T Consensus 79 ~VVYngslYY~~~~-----s~~iiKydL~t~~v~~~~~Lp~ 114 (255)
T smart00284 79 VVVYNGSLYFNKFN-----SHDICRFDLTTETYQKEPLLNG 114 (255)
T ss_pred EEEECceEEEEecC-----CccEEEEECCCCcEEEEEecCc
Confidence 69999999998444 45799999999988544 4664
No 65
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=37.22 E-value=1.2e+02 Score=21.49 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=36.1
Q ss_pred ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee-cCCCcceEEEEE
Q 042334 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR-EPRNNLEIEVYT 192 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~-~~~~~~~~~vys 192 (266)
...+++.+|.+++|...- . ..+.+.+..|+..+.|.|+..-. +......+++|.
T Consensus 8 ~a~v~~~~~~~~~W~~~~----~---------~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~ 62 (104)
T cd00837 8 VAQVYTADPSTGKWVPAS----G---------GTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYK 62 (104)
T ss_pred EEEEEEECCCCCceEECC----C---------CeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecC
Confidence 457899999989887521 1 13567788898888898888732 223344566654
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=35.64 E-value=3e+02 Score=24.07 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=17.8
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceec
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLE 141 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~ 141 (266)
.+|.+.+.. ....++.+|+.||+..+
T Consensus 64 ~~~~v~v~~---~~g~v~a~d~~tG~~~W 89 (377)
T TIGR03300 64 AGGKVYAAD---ADGTVVALDAETGKRLW 89 (377)
T ss_pred ECCEEEEEC---CCCeEEEEEccCCcEee
Confidence 456665555 35678888999887654
No 67
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=34.71 E-value=69 Score=23.01 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=29.6
Q ss_pred ceeEEEEcccccc-eeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe
Q 042334 126 RNKLFLCNPLRGE-VLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG 179 (266)
Q Consensus 126 ~~~~~V~NP~T~~-~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 179 (266)
...++..+|-++. |... . ..+.+.+..|...+.|.|..+.
T Consensus 15 vA~v~~~~p~~~~~W~~~---~-----------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 15 VAQVYQADPDTKRQWSPV---K-----------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEEETTTSESEEES---S-----------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEEcCCCCcEeeC---C-----------eEEEEEEEEECCCCEEEEEEEE
Confidence 5578999998887 8765 1 1355677788888889888874
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=33.08 E-value=3.5e+02 Score=24.00 Aligned_cols=52 Identities=4% Similarity=0.047 Sum_probs=31.3
Q ss_pred eEEEEEcCCC--CccccCCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC--eecc
Q 042334 187 EIEVYTLGTH--SWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE--QLNE 256 (266)
Q Consensus 187 ~~~vyss~t~--~W~~~~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~--~~~~ 256 (266)
.+..++..++ .|+... +.. ... .++..+|.+|....+ ..|.+||.++. .|+.
T Consensus 131 ~l~ald~~tG~~~W~~~~-~~~--~~s---------sP~v~~~~v~v~~~~------g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKV-AGE--ALS---------RPVVSDGLVLVHTSN------GMLQALNESDGAVKWTV 186 (394)
T ss_pred EEEEEECCCCCCcccccC-CCc--eec---------CCEEECCEEEEECCC------CEEEEEEccCCCEeeee
Confidence 4566666554 787652 111 112 378889998876322 37999998755 4543
No 69
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=30.03 E-value=97 Score=17.00 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=16.4
Q ss_pred EEcCeEeeeeccCCCCCccEEEEEEcCC
Q 042334 224 SAYGDMHWKNWEFGSDHEARIISFDFKN 251 (266)
Q Consensus 224 ~~~G~~yw~~~~~~~~~~~~il~fD~~~ 251 (266)
..++.+||.... ...|.+.++..
T Consensus 18 ~~~~~lYw~D~~-----~~~I~~~~~~g 40 (43)
T smart00135 18 WIEGRLYWTDWG-----LDVIEVANLDG 40 (43)
T ss_pred ecCCEEEEEeCC-----CCEEEEEeCCC
Confidence 556899999444 35788888764
No 70
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=29.74 E-value=82 Score=17.50 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=8.6
Q ss_pred cEEEEEEcCCCe
Q 042334 242 ARIISFDFKNEQ 253 (266)
Q Consensus 242 ~~il~fD~~~~~ 253 (266)
..|.++|.++.+
T Consensus 10 g~l~AlD~~TG~ 21 (38)
T PF01011_consen 10 GYLYALDAKTGK 21 (38)
T ss_dssp SEEEEEETTTTS
T ss_pred CEEEEEECCCCC
Confidence 478888877653
No 71
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=28.31 E-value=92 Score=29.14 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=42.8
Q ss_pred CeEEEeeecc--CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec-CCCcceEEE
Q 042334 114 YGLLLLQDCW--AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE-PRNNLEIEV 190 (266)
Q Consensus 114 ~Glll~~~~~--~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~-~~~~~~~~v 190 (266)
.-|+++..+. +.-.++-|+|-+|++|- +|...-..+... ..+||.+|. -||+++... .-....-+.
T Consensus 42 kELiviFGGGNEGiiDELHvYNTatnqWf-~PavrGDiPpgc------AA~GfvcdG----trilvFGGMvEYGkYsNdL 110 (830)
T KOG4152|consen 42 KELIVIFGGGNEGIIDELHVYNTATNQWF-APAVRGDIPPGC------AAFGFVCDG----TRILVFGGMVEYGKYSNDL 110 (830)
T ss_pred eeeEEEecCCcccchhhhhhhccccceee-cchhcCCCCCch------hhcceEecC----ceEEEEccEeeeccccchH
Confidence 4455554432 23457899999999986 555443333222 234555544 567776321 112455567
Q ss_pred EEcCCCCc--ccc
Q 042334 191 YTLGTHSW--RHA 201 (266)
Q Consensus 191 yss~t~~W--~~~ 201 (266)
|.++...| +.+
T Consensus 111 YELQasRWeWkrl 123 (830)
T KOG4152|consen 111 YELQASRWEWKRL 123 (830)
T ss_pred HHhhhhhhhHhhc
Confidence 77777655 555
No 72
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=25.58 E-value=99 Score=21.42 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.0
Q ss_pred CceeEEEEcccccceeccC
Q 042334 125 GRNKLFLCNPLRGEVLELP 143 (266)
Q Consensus 125 ~~~~~~V~NP~T~~~~~lP 143 (266)
..++++-+||.|++...|-
T Consensus 35 ~~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp --EEEEEEETTTTEEEEEE
T ss_pred CCcCEEEEECCCCeEEEeh
Confidence 4568899999999876654
No 73
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=24.88 E-value=80 Score=26.89 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHhccCC-hhhHHHHHhhhHhHHHHhc
Q 042334 5 EVKVPADIVYEIFIRLP-VKSLMRFRSISKSWRDIID 40 (266)
Q Consensus 5 ~~~LP~Dll~~IL~rLP-~~~l~r~~~VcK~Wr~~i~ 40 (266)
...||.+++.+||.||| =.+|..++-|-..-..++.
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 34799999999999998 6666666655443333333
No 74
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=24.62 E-value=2e+02 Score=24.67 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=44.0
Q ss_pred CcceEEEEEcCCCCcccc--CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCeecccCC
Q 042334 184 NNLEIEVYTLGTHSWRHA--SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPL 259 (266)
Q Consensus 184 ~~~~~~vyss~t~~W~~~--~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~l 259 (266)
....+.+|+..+..|... ........ ....+..-+++.|.+-.-... ...+..||.++.+|..+.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~-----l~~~~~~~Llv~G~ft~~~~~-----~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTD-----LQWASNNQLLVGGNFTLNGTN-----SSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEE-----EEEecCCEEEEEEeeEECCCC-----ceeEEEEecCCCeeeecCC
Confidence 477899999999999988 32222111 111112468888876654322 5689999999999977643
No 75
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.21 E-value=4.8e+02 Score=22.72 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=50.7
Q ss_pred eeeecCCCCCeEEEEEeecCCCcceEEEEEcCCCCcccc-CC-Cccccccchhhhccccccce-EEcCeEeeeeccCCCC
Q 042334 163 GIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHA-SP-SSIRLSNNKLQLQCLSEFGL-SAYGDMHWKNWEFGSD 239 (266)
Q Consensus 163 ~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~t~~W~~~-~~-p~~~~~~~~~~~~~~~~~~v-~~~G~~yw~~~~~~~~ 239 (266)
++...|... .+|++.+.+ -....+|+..++.=... .. +....... ++ .-+|..-+.++++...
T Consensus 9 ~~a~~p~~~--~avafaRRP--G~~~~v~D~~~g~~~~~~~a~~gRHFyGH----------g~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 9 GVAAHPTRP--EAVAFARRP--GTFALVFDCRTGQLLQRLWAPPGRHFYGH----------GVFSPDGRLLYTTENDYET 74 (305)
T ss_pred ceeeCCCCC--eEEEEEeCC--CcEEEEEEcCCCceeeEEcCCCCCEEecC----------EEEcCCCCEEEEeccccCC
Confidence 555666433 455555655 45777888888653333 32 33333333 44 5568777776666567
Q ss_pred CccEEEEEEcCCCeeccc-CCCC
Q 042334 240 HEARIISFDFKNEQLNET-PLPD 261 (266)
Q Consensus 240 ~~~~il~fD~~~~~~~~i-~lP~ 261 (266)
.+..|-++|+. +.+..+ +.|.
T Consensus 75 g~G~IgVyd~~-~~~~ri~E~~s 96 (305)
T PF07433_consen 75 GRGVIGVYDAA-RGYRRIGEFPS 96 (305)
T ss_pred CcEEEEEEECc-CCcEEEeEecC
Confidence 78899999999 455544 4443
No 76
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=22.77 E-value=1.6e+02 Score=16.81 Aligned_cols=26 Identities=15% Similarity=0.530 Sum_probs=16.6
Q ss_pred CeEeeeeccCCCCCccEEEEEEcCCCeecc
Q 042334 227 GDMHWKNWEFGSDHEARIISFDFKNEQLNE 256 (266)
Q Consensus 227 G~~yw~~~~~~~~~~~~il~fD~~~~~~~~ 256 (266)
|.+||...+. ...|.+-++....-+.
T Consensus 1 ~~iYWtD~~~----~~~I~~a~~dGs~~~~ 26 (42)
T PF00058_consen 1 GKIYWTDWSQ----DPSIERANLDGSNRRT 26 (42)
T ss_dssp TEEEEEETTT----TEEEEEEETTSTSEEE
T ss_pred CEEEEEECCC----CcEEEEEECCCCCeEE
Confidence 5799994441 2378888887655433
No 77
>COG3196 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.10 E-value=80 Score=24.08 Aligned_cols=20 Identities=30% Similarity=0.420 Sum_probs=16.6
Q ss_pred CCCCCCCCHHHHHHHhccCC
Q 042334 2 DSSEVKVPADIVYEIFIRLP 21 (266)
Q Consensus 2 ~s~~~~LP~Dll~~IL~rLP 21 (266)
.......|+|++.|++.|-|
T Consensus 78 ~~i~~~vp~d~~~Ev~ERTP 97 (183)
T COG3196 78 WAVPDDVPEDVTEEVLERTP 97 (183)
T ss_pred ccCCCCChHHHHHHHHhcCC
Confidence 33456789999999999999
No 78
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=20.42 E-value=5.7e+02 Score=22.17 Aligned_cols=148 Identities=15% Similarity=0.087 Sum_probs=77.9
Q ss_pred EEeccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcC-CC--C----cceeeeeecCCCCCeEEEEEe
Q 042334 107 VFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLL-PR--S----LTSYGIGFDSATNSYKIVRLG 179 (266)
Q Consensus 107 ~~~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~-~~--~----~~~~~l~~d~~~~~ykvv~~~ 179 (266)
.+..+ -+|-|-+... ....+-=.||.|++....|-..-.+++.... |. . ....-.-+|+.+..++=+-+-
T Consensus 66 dvapa-pdG~VWft~q--g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 66 DVAPA-PDGAVWFTAQ--GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccC-CCCceEEecC--ccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecc
Confidence 34445 6776665552 3444555699999999988776554432210 00 0 000111123323333333221
Q ss_pred -ecCCCcceEEEEEcCCCCccccCC-------Ccc--ccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEc
Q 042334 180 -REPRNNLEIEVYTLGTHSWRHASP-------SSI--RLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDF 249 (266)
Q Consensus 180 -~~~~~~~~~~vyss~t~~W~~~~~-------p~~--~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~ 249 (266)
+.........|||-..+.|=..+. |.. +.....-++-..+..++--||.+|+.+-. .++|...|.
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla-----gnaiaridp 217 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA-----GNAIARIDP 217 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc-----ccceEEccc
Confidence 112356777889988888844311 211 11000000001111234457999988332 469999999
Q ss_pred CCCeecccCCCCC
Q 042334 250 KNEQLNETPLPDF 262 (266)
Q Consensus 250 ~~~~~~~i~lP~~ 262 (266)
.+..-.+++.|..
T Consensus 218 ~~~~aev~p~P~~ 230 (353)
T COG4257 218 FAGHAEVVPQPNA 230 (353)
T ss_pred ccCCcceecCCCc
Confidence 9998888888876
No 79
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=20.28 E-value=1.3e+02 Score=25.16 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=34.7
Q ss_pred CCCcccc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCe-ecccCCCC
Q 042334 195 THSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQ-LNETPLPD 261 (266)
Q Consensus 195 t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~-~~~i~lP~ 261 (266)
.+.|... ..|...... ..|+.+|.+|....+ ...|+-||++++. .....+|.
T Consensus 55 ~~~~~~~~~lp~~~~gT----------g~VVynGs~yynk~~-----t~~ivky~l~~~~~~~~~~lp~ 108 (249)
T KOG3545|consen 55 RGRKAEKYRLPYSWDGT----------GHVVYNGSLYYNKAG-----TRNIIKYDLETRTVAGSAALPY 108 (249)
T ss_pred ccCcceEEeCCCCcccc----------ceEEEcceEEeeccC-----CcceEEEEeecceeeeeeeccc
Confidence 3566666 667654432 269999999998555 5689999999853 33334443
Done!