Query 042334
Match_columns 266
No_of_seqs 115 out of 1253
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 08:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 99.2 3.4E-11 1.2E-15 75.3 4.6 42 3-45 7-48 (53)
2 2e31_A FBS1, F-box only protei 99.1 1.1E-10 3.9E-15 98.3 5.6 50 3-53 49-99 (297)
3 3l2o_B F-box only protein 4; s 98.2 1.1E-06 3.6E-11 73.5 3.6 51 3-54 3-53 (312)
4 1zgk_A Kelch-like ECH-associat 98.1 0.00015 5E-09 61.2 16.4 111 127-262 90-205 (308)
5 4asc_A Kelch repeat and BTB do 98.1 7E-05 2.4E-09 63.4 13.3 125 113-262 97-233 (315)
6 2xn4_A Kelch-like protein 2; s 98.0 6.5E-05 2.2E-09 63.1 12.7 126 113-262 60-194 (302)
7 3ii7_A Kelch-like protein 7; p 98.0 0.00014 4.6E-09 61.2 14.0 113 126-262 23-139 (306)
8 3ii7_A Kelch-like protein 7; p 98.0 9.4E-05 3.2E-09 62.2 13.0 125 113-262 100-237 (306)
9 1zgk_A Kelch-like ECH-associat 98.0 0.00013 4.3E-09 61.6 13.8 126 113-263 167-300 (308)
10 2vpj_A Kelch-like protein 12; 98.0 0.00011 3.9E-09 61.5 13.3 125 113-262 61-196 (301)
11 4asc_A Kelch repeat and BTB do 98.0 8.4E-05 2.9E-09 62.9 12.2 111 128-262 68-186 (315)
12 2vpj_A Kelch-like protein 12; 98.0 0.00011 3.7E-09 61.6 12.5 125 113-262 111-243 (301)
13 2woz_A Kelch repeat and BTB do 97.9 0.00019 6.4E-09 60.8 13.6 111 128-262 79-196 (318)
14 2xn4_A Kelch-like protein 2; s 97.9 0.00014 4.8E-09 61.0 12.0 126 113-263 154-290 (302)
15 2woz_A Kelch repeat and BTB do 97.9 0.00014 4.9E-09 61.5 12.1 121 113-257 157-293 (318)
16 3v7d_B Cell division control p 97.8 1.5E-05 5.2E-10 70.7 5.3 39 6-45 16-55 (464)
17 2ast_B S-phase kinase-associat 97.8 1.2E-05 4E-10 68.7 3.6 41 3-44 7-47 (336)
18 2ovr_B FBW7, F-BOX/WD repeat p 97.7 3.2E-05 1.1E-09 68.4 5.2 45 4-49 18-62 (445)
19 1p22_A F-BOX/WD-repeat protein 97.5 4.1E-05 1.4E-09 67.6 3.6 40 6-46 12-55 (435)
20 2uvk_A YJHT; unknown function, 97.4 0.00061 2.1E-08 58.5 9.2 108 127-257 86-234 (357)
21 2p1m_B Transport inhibitor res 97.4 8.6E-05 2.9E-09 68.3 3.7 35 4-38 5-40 (594)
22 2uvk_A YJHT; unknown function, 97.4 0.0015 5.1E-08 56.0 11.1 125 113-261 18-188 (357)
23 2zwa_A Leucine carboxyl methyl 97.2 0.0022 7.4E-08 60.6 11.0 128 114-261 500-645 (695)
24 1k3i_A Galactose oxidase precu 97.0 0.003 1E-07 59.0 10.0 121 114-257 197-329 (656)
25 3ogk_B Coronatine-insensitive 97.0 0.00035 1.2E-08 64.2 3.0 34 6-39 14-48 (592)
26 2zwa_A Leucine carboxyl methyl 96.9 0.0049 1.7E-07 58.2 10.9 121 114-258 397-529 (695)
27 1k3i_A Galactose oxidase precu 95.4 0.039 1.3E-06 51.5 8.0 109 129-263 168-287 (656)
28 1evh_A WH1 domain, protein (ME 61.4 13 0.00044 26.0 4.6 55 126-191 10-65 (112)
29 1egx_A VAsp, vasodilator-stimu 59.9 14 0.00047 26.0 4.6 57 126-192 10-68 (115)
30 3q7m_A Lipoprotein YFGL, BAMB; 58.3 43 0.0015 27.8 8.4 105 113-253 102-209 (376)
31 1kv9_A Type II quinohemoprotei 52.0 57 0.0019 30.1 8.7 124 113-256 65-194 (668)
32 3p5b_L Low density lipoprotein 51.8 1.1E+02 0.0038 26.0 10.4 28 222-254 250-280 (400)
33 3m0c_C LDL receptor, low-densi 48.5 1.2E+02 0.004 28.9 10.3 27 222-253 562-591 (791)
34 2z2n_A Virginiamycin B lyase; 48.2 95 0.0032 24.1 12.2 112 113-260 150-263 (299)
35 1ddw_A GLGF-domain protein hom 47.8 37 0.0013 24.0 5.2 41 126-179 10-51 (120)
36 3p5b_L Low density lipoprotein 47.2 1.3E+02 0.0045 25.5 12.2 72 162-252 249-321 (400)
37 3q7m_A Lipoprotein YFGL, BAMB; 45.2 1.1E+02 0.0036 25.3 8.8 111 113-255 52-168 (376)
38 2dk7_A Transcription elongatio 44.7 22 0.00074 22.8 3.1 24 125-148 28-51 (73)
39 3m0c_C LDL receptor, low-densi 44.5 2.1E+02 0.0072 27.1 12.6 24 224-252 610-633 (791)
40 3nol_A Glutamine cyclotransfer 44.0 1.3E+02 0.0043 24.4 12.1 110 107-252 46-156 (262)
41 2jp2_A Spred-2, sprouty-relate 43.7 35 0.0012 24.3 4.6 56 126-191 19-78 (126)
42 2z2n_A Virginiamycin B lyase; 42.0 1.2E+02 0.0041 23.5 11.7 112 113-260 108-221 (299)
43 1yiq_A Quinohemoprotein alcoho 40.9 98 0.0033 28.6 8.4 125 113-257 69-200 (689)
44 2kwv_A RAD30 homolog B, DNA po 40.8 15 0.0005 21.2 1.7 14 7-20 23-36 (48)
45 1n7d_A LDL receptor, low-densi 40.0 1.4E+02 0.0047 27.8 9.3 25 224-253 592-616 (699)
46 1i2h_A PSD-ZIP45(homer-1C/VESL 38.5 54 0.0019 24.6 5.1 41 126-179 15-56 (168)
47 4a0p_A LRP6, LRP-6, low-densit 37.7 2.3E+02 0.0079 25.8 10.4 26 223-253 526-551 (628)
48 1n7d_A LDL receptor, low-densi 36.9 1.8E+02 0.0061 27.0 9.5 26 222-252 544-572 (699)
49 2be1_A Serine/threonine-protei 36.7 61 0.0021 27.3 5.8 23 225-253 110-132 (339)
50 4ggc_A P55CDC, cell division c 35.3 1.4E+02 0.0047 23.3 7.7 28 111-143 34-61 (318)
51 1ijq_A LDL receptor, low-densi 32.6 2E+02 0.0067 23.3 12.6 72 162-253 167-240 (316)
52 1kb0_A Quinohemoprotein alcoho 31.7 1.7E+02 0.0058 26.9 8.5 121 113-257 76-207 (677)
53 1xod_A Spred1; sprouty, EVH1, 31.6 34 0.0012 24.1 2.8 44 126-179 10-56 (118)
54 4gga_A P55CDC, cell division c 30.9 1.5E+02 0.0052 24.7 7.6 28 113-144 115-142 (420)
55 3v65_B Low-density lipoprotein 30.4 2.4E+02 0.0082 23.6 11.2 22 224-250 296-317 (386)
56 1ijq_A LDL receptor, low-densi 29.5 2.2E+02 0.0076 22.9 10.5 110 109-253 84-197 (316)
57 1w6s_A Methanol dehydrogenase 28.1 3.4E+02 0.012 24.6 10.0 124 113-256 61-198 (599)
58 2ad6_A Methanol dehydrogenase 28.0 1.7E+02 0.0056 26.4 7.5 120 113-256 61-192 (571)
59 3dsm_A Uncharacterized protein 27.8 2.4E+02 0.0082 22.7 10.7 123 106-266 87-228 (328)
60 3v65_B Low-density lipoprotein 27.7 2.7E+02 0.0092 23.3 10.6 26 222-252 250-278 (386)
61 3mbr_X Glutamine cyclotransfer 26.6 2.4E+02 0.0082 22.3 11.3 105 113-252 29-134 (243)
62 2dg1_A DRP35, lactonase; beta 25.4 2.5E+02 0.0086 22.2 10.9 71 113-199 54-125 (333)
63 3v64_C Agrin; beta propeller, 25.4 2.8E+02 0.0097 22.7 11.4 118 108-257 122-240 (349)
64 3sov_A LRP-6, low-density lipo 24.6 2.8E+02 0.0097 22.5 10.4 109 109-252 86-198 (318)
65 2qc5_A Streptogramin B lactona 24.2 2.4E+02 0.0083 21.6 11.5 112 113-260 113-226 (300)
66 2agh_C Zinc finger protein HRX 23.9 43 0.0015 16.9 1.5 15 7-21 6-20 (31)
67 1qc6_A EVH1 domain from ENA/VA 23.9 1.1E+02 0.0037 21.7 4.4 43 126-178 10-52 (130)
68 1rwi_B Serine/threonine-protei 22.6 2.5E+02 0.0087 21.2 12.1 106 113-254 76-183 (270)
69 3dr2_A Exported gluconolactona 20.9 3.1E+02 0.01 21.6 7.3 19 243-261 259-277 (305)
70 3tc9_A Hypothetical hydrolase; 20.8 3.9E+02 0.013 22.7 11.1 107 114-254 149-260 (430)
71 3fvz_A Peptidyl-glycine alpha- 20.7 3.3E+02 0.011 21.8 10.4 110 113-251 206-322 (329)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.15 E-value=3.4e-11 Score=75.32 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHH
Q 042334 3 SSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRF 45 (266)
Q Consensus 3 s~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F 45 (266)
..+..||+|++.+||++||++++.++++|||+|+.++. ++.|
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~-~~~l 48 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS-DESL 48 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT-CGGG
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-ChHH
Confidence 45678999999999999999999999999999999999 8765
No 2
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.07 E-value=1.1e-10 Score=98.27 Aligned_cols=50 Identities=14% Similarity=0.414 Sum_probs=45.9
Q ss_pred CCCCCCCHHHHHHHhccCChhhHH-HHHhhhHhHHHHhcCCHHHHHHHHhcc
Q 042334 3 SSEVKVPADIVYEIFIRLPVKSLM-RFRSISKSWRDIIDGSLRFANMHMSTR 53 (266)
Q Consensus 3 s~~~~LP~Dll~~IL~rLP~~~l~-r~~~VcK~Wr~~i~~s~~F~~~~~~~~ 53 (266)
..+..||+||+.+||++||+++|+ ||++|||+|+.++. ++.|-+.+..+.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~-~~~~w~~~~~~~ 99 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD-GAPLWLLKCQQE 99 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT-SHHHHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc-ChHHHHHHhhcc
Confidence 356789999999999999999999 99999999999999 999999887655
No 3
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.15 E-value=1.1e-06 Score=73.54 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHHHHhccc
Q 042334 3 SSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRL 54 (266)
Q Consensus 3 s~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~~~~~~~ 54 (266)
+.++.||+|++..||+.|++++|+++.+|||+||.++. ++..=+.+..+..
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~-D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVR-DPILWRYFLLRDL 53 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHT-CHHHHHHHHHSSG
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-cchHHHHHHhccC
Confidence 34568999999999999999999999999999999999 9987776666554
No 4
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.11 E-value=0.00015 Score=61.24 Aligned_cols=111 Identities=9% Similarity=-0.017 Sum_probs=73.2
Q ss_pred eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe--ecCCCcceEEEEEcCCCCcccc-CC
Q 042334 127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG--REPRNNLEIEVYTLGTHSWRHA-SP 203 (266)
Q Consensus 127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~~~~~~vyss~t~~W~~~-~~ 203 (266)
..++++||.|++|..+++++..+. . . ....++ -+|+++. ........+++|+..++.|+.+ .+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~--~------~-~~~~~~-----~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 155 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRN--R------I-GVGVID-----GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM 155 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCB--T------C-EEEEET-----TEEEEECCEETTEECCCEEEEETTTTEEEECCCC
T ss_pred ceEEEECCCCCeEeECCCCCcCcc--c------c-EEEEEC-----CEEEEEcCCCCCcccccEEEECCCCCeEeECCCC
Confidence 468999999999999998775421 1 1 112222 2566663 2222346799999999999988 55
Q ss_pred CccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334 204 SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF 262 (266)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~ 262 (266)
|.... ... .+.++|.||.+ .... ......+..||+.+++|..+ ++|..
T Consensus 156 p~~r~-~~~---------~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~ 205 (308)
T 1zgk_A 156 LTRRI-GVG---------VAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAMNTI 205 (308)
T ss_dssp SSCCB-SCE---------EEEETTEEEEECCBCS-SCBCCCEEEEETTTTEEEECCCCSSC
T ss_pred Ccccc-ceE---------EEEECCEEEEEeCCCC-CCcCceEEEEeCCCCeEeeCCCCCCc
Confidence 53322 222 67789999999 3321 12245799999999999988 44543
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.06 E-value=7e-05 Score=63.40 Aligned_cols=125 Identities=8% Similarity=-0.020 Sum_probs=81.1
Q ss_pred cCeEEEeeecc------CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec---CC
Q 042334 113 AYGLLLLQDCW------AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE---PR 183 (266)
Q Consensus 113 ~~Glll~~~~~------~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~---~~ 183 (266)
.+|.|.+..+. .....+.++||.|++|..+++.+..+. ...+..++ -+|+++... ..
T Consensus 97 ~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~~-----~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 97 ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY---------GHTVLSHM-----DLVYVIGGKGSDRK 162 (315)
T ss_dssp ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB---------SCEEEEET-----TEEEEECCBCTTSC
T ss_pred ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc---------ceeEEEEC-----CEEEEEeCCCCCCc
Confidence 56666555431 123579999999999999998775421 11112222 256666322 22
Q ss_pred CcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCC
Q 042334 184 NNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLP 260 (266)
Q Consensus 184 ~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP 260 (266)
....+++|+..++.|+.+ .+|.... .. ..+.++|.||.+ .... ......+..||+.+.+|..+ ++|
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p 231 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARS-LF---------GATVHDGRIIVAAGVTD-TGLTSSAEVYSITDNKWAPFEAFP 231 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCB-SC---------EEEEETTEEEEEEEECS-SSEEEEEEEEETTTTEEEEECCCS
T ss_pred ccceEEEEeCCCCeEEECCCCCCchh-ce---------EEEEECCEEEEEeccCC-CCccceEEEEECCCCeEEECCCCC
Confidence 456899999999999988 4443221 22 267889999999 4331 12345799999999999988 455
Q ss_pred CC
Q 042334 261 DF 262 (266)
Q Consensus 261 ~~ 262 (266)
..
T Consensus 232 ~~ 233 (315)
T 4asc_A 232 QE 233 (315)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 6
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.04 E-value=6.5e-05 Score=63.11 Aligned_cols=126 Identities=10% Similarity=0.124 Sum_probs=79.3
Q ss_pred cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee--cCCCcce
Q 042334 113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR--EPRNNLE 187 (266)
Q Consensus 113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~~~~~~~ 187 (266)
.+|.|.+..+. .....+.++||.|++|..+++++..+. .+ . ...++ + +++++.. .......
T Consensus 60 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~-----~--~~~~~----~-~iyv~GG~~~~~~~~~ 125 (302)
T 2xn4_A 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRS--TL-----G--AAVLN----G-LLYAVGGFDGSTGLSS 125 (302)
T ss_dssp ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB--SC-----E--EEEET----T-EEEEEEEECSSCEEEE
T ss_pred ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcccc--ce-----E--EEEEC----C-EEEEEcCCCCCccCce
Confidence 46666555432 123568999999999999998775421 11 1 11221 2 4555532 2223467
Q ss_pred EEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccC-CCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334 188 IEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEF-GSDHEARIISFDFKNEQLNET-PLPDF 262 (266)
Q Consensus 188 ~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~-~~~~~~~il~fD~~~~~~~~i-~lP~~ 262 (266)
+++|+..++.|+.+ .+|... ... ..+.++|.+|.+ .... .......+..||+.+++|..+ ++|..
T Consensus 126 ~~~~d~~~~~W~~~~~~p~~r-~~~---------~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 194 (302)
T 2xn4_A 126 VEAYNIKSNEWFHVAPMNTRR-SSV---------GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR 194 (302)
T ss_dssp EEEEETTTTEEEEECCCSSCC-BSC---------EEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC
T ss_pred EEEEeCCCCeEeecCCCCCcc-cCc---------eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc
Confidence 99999999999988 444321 122 267889999999 3321 111245699999999999988 55543
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.01 E-value=0.00014 Score=61.22 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=75.0
Q ss_pred ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee-cCCCcceEEEEEcCCCCcccc-CC
Q 042334 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR-EPRNNLEIEVYTLGTHSWRHA-SP 203 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~-~~~~~~~~~vyss~t~~W~~~-~~ 203 (266)
...+.++||.|++|..+++++..+. .+ . ...++ + +|+++.. .......+++|+..++.|+.. .+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~--~~-----~--~~~~~----~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRR--DA-----A--CVFWD----N-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCB--SC-----E--EEEET----T-EEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred CceEEEecCCCCCEecCCCCCcccc--ee-----E--EEEEC----C-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 4578999999999999998775421 11 1 11221 2 4555532 223456899999999999988 55
Q ss_pred CccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334 204 SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF 262 (266)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~ 262 (266)
|.... ... .+.++|.+|.+ ..+........+..||+.+.+|..+ ++|..
T Consensus 89 p~~r~-~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 139 (306)
T 3ii7_A 89 PTPRD-SLA---------ACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ 139 (306)
T ss_dssp SSCCB-SCE---------EEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC
T ss_pred Ccccc-cee---------EEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC
Confidence 53322 222 67889999998 4332223356799999999999988 55543
No 8
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.00 E-value=9.4e-05 Score=62.23 Aligned_cols=125 Identities=14% Similarity=0.009 Sum_probs=80.5
Q ss_pred cCeEEEeeecc----CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe--ecCCC--
Q 042334 113 AYGLLLLQDCW----AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG--REPRN-- 184 (266)
Q Consensus 113 ~~Glll~~~~~----~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~-- 184 (266)
.+|.|.+..+. .....+.++||.|++|..+++++..+. . . ....++ + +|+++. .....
T Consensus 100 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~------~-~~~~~~----~-~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 100 AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC--S------H-GMVEAN----G-LIYVCGGSLGNNVSG 165 (306)
T ss_dssp ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB--S------C-EEEEET----T-EEEEECCEESCTTTC
T ss_pred ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc--e------e-EEEEEC----C-EEEEECCCCCCCCcc
Confidence 56666555432 123579999999999999988875421 1 1 112221 2 566663 22222
Q ss_pred --cceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CC
Q 042334 185 --NLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PL 259 (266)
Q Consensus 185 --~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~l 259 (266)
...+++|+..++.|+.+ .+|.... .. ..+.++|.||.+ .... ......+..||+.+.+|..+ ++
T Consensus 166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~i~v~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWTELCPMIEARK-NH---------GLVFVKDKIFAVGGQNG-LGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCB-SC---------EEEEETTEEEEECCEET-TEEBCCEEEEETTTTEEEECCCC
T ss_pred cccceEEEeCCCCCeEEECCCccchhh-cc---------eEEEECCEEEEEeCCCC-CCCCceEEEeeCCCCcEEECCCC
Confidence 56899999999999988 4443222 22 267889999999 3321 12235799999999999988 55
Q ss_pred CCC
Q 042334 260 PDF 262 (266)
Q Consensus 260 P~~ 262 (266)
|..
T Consensus 235 p~~ 237 (306)
T 3ii7_A 235 PWK 237 (306)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 9
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.00 E-value=0.00013 Score=61.63 Aligned_cols=126 Identities=15% Similarity=0.044 Sum_probs=81.2
Q ss_pred cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcce
Q 042334 113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLE 187 (266)
Q Consensus 113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~ 187 (266)
.+|.|.+..+. .....+.++||.|.+|..+++++..+. . . .+..++ =+|+++... ......
T Consensus 167 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~------~-~~~~~~-----~~iyv~GG~~~~~~~~~ 232 (308)
T 1zgk_A 167 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS--G------A-GVCVLH-----NCIYAAGGYDGQDQLNS 232 (308)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB--S------C-EEEEET-----TEEEEECCBCSSSBCCC
T ss_pred ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc--c------c-eEEEEC-----CEEEEEeCCCCCCccce
Confidence 46666555432 114578999999999999987765421 1 1 122222 246665322 223568
Q ss_pred EEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCCC
Q 042334 188 IEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDFR 263 (266)
Q Consensus 188 ~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~ 263 (266)
+++|+..++.|+.+ .+|.... .. ..+.++|.||.+ ..+ .......+..||+++.+|+.+ ++|..+
T Consensus 233 v~~yd~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~~r 300 (308)
T 1zgk_A 233 VERYDVETETWTFVAPMKHRRS-AL---------GITVHQGRIYVLGGYD-GHTFLDSVECYDPDTDTWSEVTRMTSGR 300 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCB-SC---------EEEEETTEEEEECCBC-SSCBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred EEEEeCCCCcEEECCCCCCCcc-ce---------EEEEECCEEEEEcCcC-CCcccceEEEEcCCCCEEeecCCCCCCc
Confidence 99999999999988 4443221 22 267789999999 332 223356899999999999988 666543
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.00 E-value=0.00011 Score=61.49 Aligned_cols=125 Identities=10% Similarity=0.077 Sum_probs=79.9
Q ss_pred cCeEEEeeecc---CCceeEEEEcccccc---eeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCC
Q 042334 113 AYGLLLLQDCW---AGRNKLFLCNPLRGE---VLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRN 184 (266)
Q Consensus 113 ~~Glll~~~~~---~~~~~~~V~NP~T~~---~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~ 184 (266)
.+|.|.+..+. .....++++||.|++ |..+++.+..+. . . ....++ -+|+++... ...
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~--~------~-~~~~~~-----~~lyv~GG~~~~~~ 126 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRG--L------A-GATTLG-----DMIYVSGGFDGSRR 126 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCB--S------C-EEEEET-----TEEEEECCBCSSCB
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcc--c------e-eEEEEC-----CEEEEEcccCCCcc
Confidence 45656555432 123579999999999 999988775421 1 1 112221 256666322 223
Q ss_pred cceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCC
Q 042334 185 NLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPD 261 (266)
Q Consensus 185 ~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~ 261 (266)
...+++|+..++.|+.+ ..|... ... ..+.++|.+|.+ ..+ .......+..||+.+.+|..+ ++|.
T Consensus 127 ~~~~~~~d~~~~~W~~~~~~p~~r-~~~---------~~~~~~~~iyv~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~p~ 195 (301)
T 2vpj_A 127 HTSMERYDPNIDQWSMLGDMQTAR-EGA---------GLVVASGVIYCLGGYD-GLNILNSVEKYDPHTGHWTNVTPMAT 195 (301)
T ss_dssp CCEEEEEETTTTEEEEEEECSSCC-BSC---------EEEEETTEEEEECCBC-SSCBCCCEEEEETTTTEEEEECCCSS
T ss_pred cceEEEEcCCCCeEEECCCCCCCc-ccc---------eEEEECCEEEEECCCC-CCcccceEEEEeCCCCcEEeCCCCCc
Confidence 56899999999999988 444322 122 267789999999 322 122346799999999999988 4554
Q ss_pred C
Q 042334 262 F 262 (266)
Q Consensus 262 ~ 262 (266)
.
T Consensus 196 ~ 196 (301)
T 2vpj_A 196 K 196 (301)
T ss_dssp C
T ss_pred c
Confidence 3
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.98 E-value=8.4e-05 Score=62.91 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=74.5
Q ss_pred eEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee-c----CCCcceEEEEEcCCCCcccc-
Q 042334 128 KLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR-E----PRNNLEIEVYTLGTHSWRHA- 201 (266)
Q Consensus 128 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~-~----~~~~~~~~vyss~t~~W~~~- 201 (266)
.++++||.|++|..+|+.+..+. .+ . ...+ + -+|+++.. + ......+++|+..++.|+.+
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~--~~-----~--~~~~----~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~ 133 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRC--LF-----G--LGEA----L-NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD 133 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEE--SC-----E--EEEE----T-TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC
T ss_pred ceEEecCCCCeEEECCCCCcchh--ce-----e--EEEE----C-CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC
Confidence 48999999999999998775421 11 1 1112 1 25666632 1 23456899999999999988
Q ss_pred CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334 202 SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF 262 (266)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~ 262 (266)
.+|.... ... .+.++|.+|.+ ...........+..||+.+.+|+.+ ++|..
T Consensus 134 ~~p~~r~-~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 186 (315)
T 4asc_A 134 PLPYVVY-GHT---------VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA 186 (315)
T ss_dssp CCSSCCB-SCE---------EEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC
T ss_pred CCCCccc-cee---------EEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc
Confidence 5554322 222 67899999999 4422333456799999999999988 45543
No 12
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.96 E-value=0.00011 Score=61.61 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=80.5
Q ss_pred cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcce
Q 042334 113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLE 187 (266)
Q Consensus 113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~ 187 (266)
.+|.|.+..+. .....+.++||.|++|..+++.+..+. ...+..++ -+|+++... ......
T Consensus 111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~~-----~~iyv~GG~~~~~~~~~ 176 (301)
T 2vpj_A 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTARE---------GAGLVVAS-----GVIYCLGGYDGLNILNS 176 (301)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB---------SCEEEEET-----TEEEEECCBCSSCBCCC
T ss_pred ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcc---------cceEEEEC-----CEEEEECCCCCCcccce
Confidence 56666665532 123479999999999999987764321 11122222 246665322 223568
Q ss_pred EEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334 188 IEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF 262 (266)
Q Consensus 188 ~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~ 262 (266)
+++|+..++.|+.+ .+|.... .. ..+.++|.||.+ ..+ .......+..||+.+.+|..+ ++|..
T Consensus 177 ~~~~d~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 177 VEKYDPHTGHWTNVTPMATKRS-GA---------GVALLNDHIYVVGGFD-GTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp EEEEETTTTEEEEECCCSSCCB-SC---------EEEEETTEEEEECCBC-SSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred EEEEeCCCCcEEeCCCCCcccc-cc---------eEEEECCEEEEEeCCC-CCcccceEEEEeCCCCcEEECCCCCCc
Confidence 99999999999988 4443222 22 267889999999 332 122245799999999999988 45543
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.93 E-value=0.00019 Score=60.81 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=72.7
Q ss_pred eEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-ec---CCCcceEEEEEcCCCCcccc-C
Q 042334 128 KLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-RE---PRNNLEIEVYTLGTHSWRHA-S 202 (266)
Q Consensus 128 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~---~~~~~~~~vyss~t~~W~~~-~ 202 (266)
.++++||.|++|..+|+++..+. .+ . ...++ + +|+++. .. ......+++|+..++.|+.+ .
T Consensus 79 ~~~~~d~~~~~W~~~~~~p~~r~--~~-----~--~~~~~----~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 144 (318)
T 2woz_A 79 YFFQLDNVSSEWVGLPPLPSARC--LF-----G--LGEVD----D-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN 144 (318)
T ss_dssp EEEEEETTTTEEEECSCBSSCBC--SC-----E--EEEET----T-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC
T ss_pred cEEEEeCCCCcEEECCCCCcccc--cc-----c--eEEEC----C-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCC
Confidence 38899999999999988775421 11 1 11121 2 455552 22 22346799999999999988 5
Q ss_pred CCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334 203 PSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF 262 (266)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~ 262 (266)
+|.... ... .+.++|.||.+ ...........+..||+.+.+|+.+ ++|..
T Consensus 145 ~p~~r~-~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 196 (318)
T 2woz_A 145 LPIKVY-GHN---------VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP 196 (318)
T ss_dssp CSSCEE-SCE---------EEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC
T ss_pred CCCccc-ccE---------EEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC
Confidence 554322 222 67799999999 4322222345699999999999988 45543
No 14
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.89 E-value=0.00014 Score=61.00 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=80.0
Q ss_pred cCeEEEeeecc-C----CceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCc
Q 042334 113 AYGLLLLQDCW-A----GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNN 185 (266)
Q Consensus 113 ~~Glll~~~~~-~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~ 185 (266)
.+|.|.+..+. . ....+.++||.|.+|..+++++..+. ......++ =+|+.+... ....
T Consensus 154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---------~~~~~~~~-----~~iyv~GG~~~~~~~ 219 (302)
T 2xn4_A 154 VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS---------GAGVGVLN-----NLLYAVGGHDGPLVR 219 (302)
T ss_dssp ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB---------SCEEEEET-----TEEEEECCBSSSSBC
T ss_pred ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc---------cccEEEEC-----CEEEEECCCCCCccc
Confidence 56666555432 1 13568999999999999987764421 11122222 256666322 2234
Q ss_pred ceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccC--CCC
Q 042334 186 LEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP--LPD 261 (266)
Q Consensus 186 ~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~--lP~ 261 (266)
..+++|+..++.|+.+ .+|... ... ..+.++|.||.+ ..+ .......+..||+++.+|+.++ +|.
T Consensus 220 ~~~~~yd~~~~~W~~~~~~~~~r-~~~---------~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~ 288 (302)
T 2xn4_A 220 KSVEVYDPTTNAWRQVADMNMCR-RNA---------GVCAVNGLLYVVGGDD-GSCNLASVEYYNPTTDKWTVVSSCMST 288 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCC-BSC---------EEEEETTEEEEECCBC-SSSBCCCEEEEETTTTEEEECSSCCSS
T ss_pred ceEEEEeCCCCCEeeCCCCCCcc-ccC---------eEEEECCEEEEECCcC-CCcccccEEEEcCCCCeEEECCcccCc
Confidence 5799999999999988 444321 122 267889999998 332 2223457999999999999884 554
Q ss_pred CC
Q 042334 262 FR 263 (266)
Q Consensus 262 ~~ 263 (266)
.+
T Consensus 289 ~r 290 (302)
T 2xn4_A 289 GR 290 (302)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 15
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.89 E-value=0.00014 Score=61.52 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=76.9
Q ss_pred cCeEEEeeecc----CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe--ecCCCcc
Q 042334 113 AYGLLLLQDCW----AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG--REPRNNL 186 (266)
Q Consensus 113 ~~Glll~~~~~----~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~~~ 186 (266)
.+|.|.+..+. .....+.++||.|.+|..+++.+..+. . . .+..++ + +|+++. .......
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~------~-~~~~~~----~-~iyv~GG~~~~~~~~ 222 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS--M------F-GVAIHK----G-KIVIAGGVTEDGLSA 222 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB--S------C-EEEEET----T-EEEEEEEEETTEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc--c------c-eEEEEC----C-EEEEEcCcCCCCccc
Confidence 56666554432 123569999999999999987765421 1 1 112222 2 555553 2222346
Q ss_pred eEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCC--------CCCccEEEEEEcCCCeecc
Q 042334 187 EIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFG--------SDHEARIISFDFKNEQLNE 256 (266)
Q Consensus 187 ~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~--------~~~~~~il~fD~~~~~~~~ 256 (266)
.+++|+..++.|+.+ ..|.... .. ..+.++|.||.+ ..... ......+..||+++.+|+.
T Consensus 223 ~~~~yd~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 223 SVEAFDLKTNKWEVMTEFPQERS-SI---------SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp EEEEEETTTCCEEECCCCSSCCB-SC---------EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred eEEEEECCCCeEEECCCCCCccc-ce---------EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 789999999999998 5553221 22 267889999988 33210 1224679999999999998
Q ss_pred c
Q 042334 257 T 257 (266)
Q Consensus 257 i 257 (266)
+
T Consensus 293 ~ 293 (318)
T 2woz_A 293 M 293 (318)
T ss_dssp E
T ss_pred h
Confidence 8
No 16
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.83 E-value=1.5e-05 Score=70.68 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCC-HHH
Q 042334 6 VKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGS-LRF 45 (266)
Q Consensus 6 ~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s-~~F 45 (266)
..||+|++.+||++||+++|.+++.|||+|+.++. + +..
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~-~~~~~ 55 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR-KSTSL 55 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT-TCHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc-CCHHH
Confidence 35999999999999999999999999999999999 7 543
No 17
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.78 E-value=1.2e-05 Score=68.73 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH
Q 042334 3 SSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR 44 (266)
Q Consensus 3 s~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~ 44 (266)
..+..||+|++.+||.+|+.+++.+++.|||+|+.++. ++.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~-~~~ 47 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS-DES 47 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT-CST
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-Cch
Confidence 45788999999999999999999999999999999997 664
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.70 E-value=3.2e-05 Score=68.37 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHHH
Q 042334 4 SEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMH 49 (266)
Q Consensus 4 ~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~~ 49 (266)
....||+|++.+||++|++++|.+++.|||+|+.++. ++.+-+..
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~-~~~~w~~~ 62 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE-DNLLWREK 62 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT-CSHHHHHH
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC-chhHhhhh
Confidence 3567999999999999999999999999999999999 77665543
No 19
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.55 E-value=4.1e-05 Score=67.60 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.8
Q ss_pred CCCCHH----HHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHH
Q 042334 6 VKVPAD----IVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFA 46 (266)
Q Consensus 6 ~~LP~D----ll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~ 46 (266)
..||+| |+.+||++|++++|.++++|||+|+.++. ++.+=
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~-~~~~w 55 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS-DGMLW 55 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHH-HTTHH
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-ChHHH
Confidence 358999 99999999999999999999999999998 65543
No 20
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.41 E-value=0.00061 Score=58.49 Aligned_cols=108 Identities=13% Similarity=0.040 Sum_probs=66.5
Q ss_pred eeEEEEcccccceeccCCCC-CCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC-----------------------
Q 042334 127 NKLFLCNPLRGEVLELPKPL-QDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP----------------------- 182 (266)
Q Consensus 127 ~~~~V~NP~T~~~~~lP~~~-~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~----------------------- 182 (266)
..+.++||.|.+|..+++++ ..+ . ...+..++ =||+++....
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r---~------~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGM---A------GHVTFVHN-----GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK 151 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCC---S------SEEEEEET-----TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccEEEEeCCCCcEEECCCCCCccc---c------cceEEEEC-----CEEEEEeCcCCCcCcccccchhhcCCcccchhh
Confidence 46899999999999998876 221 1 11112222 2555553221
Q ss_pred -------------CCcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEE
Q 042334 183 -------------RNNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISF 247 (266)
Q Consensus 183 -------------~~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~f 247 (266)
.....+++|+..++.|+.+ .+|........ .+.++|.||.+ ...........+..|
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~---------~~~~~~~iyv~GG~~~~~~~~~~v~~~ 222 (357)
T 2uvk_A 152 INAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAA---------VVNKGDKTWLINGEAKPGLRTDAVFEL 222 (357)
T ss_dssp HHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCE---------EEEETTEEEEECCEEETTEECCCEEEE
T ss_pred hhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCccccc---------EEEECCEEEEEeeecCCCcccCceEEE
Confidence 1236899999999999988 55533222222 67889999998 322111123457778
Q ss_pred Ec--CCCeeccc
Q 042334 248 DF--KNEQLNET 257 (266)
Q Consensus 248 D~--~~~~~~~i 257 (266)
|+ .+.+|+.+
T Consensus 223 d~d~~~~~W~~~ 234 (357)
T 2uvk_A 223 DFTGNNLKWNKL 234 (357)
T ss_dssp ECC---CEEEEC
T ss_pred EecCCCCcEEec
Confidence 76 89999987
No 21
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.38 E-value=8.6e-05 Score=68.26 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHhccCC-hhhHHHHHhhhHhHHHH
Q 042334 4 SEVKVPADIVYEIFIRLP-VKSLMRFRSISKSWRDI 38 (266)
Q Consensus 4 ~~~~LP~Dll~~IL~rLP-~~~l~r~~~VcK~Wr~~ 38 (266)
.++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 466799999999999999 99999999999999988
No 22
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.36 E-value=0.0015 Score=56.03 Aligned_cols=125 Identities=12% Similarity=0.063 Sum_probs=77.4
Q ss_pred cCeEEEeeeccCCceeEEEEccc--ccceeccCCCC-CCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-e-c--C---
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPL--RGEVLELPKPL-QDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-R-E--P--- 182 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~--T~~~~~lP~~~-~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~-~--~--- 182 (266)
.+|.|.+..+. ....++++||. +++|..+++++ ..+. . .. ...++ + +|+++. . . .
T Consensus 18 ~~~~iyv~GG~-~~~~~~~~d~~~~~~~W~~~~~~p~~~R~--~-----~~--~~~~~----~-~lyv~GG~~~~~~~~~ 82 (357)
T 2uvk_A 18 DNDTVYIGLGS-AGTAWYKLDTQAKDKKWTALAAFPGGPRD--Q-----AT--SAFID----G-NLYVFGGIGKNSEGLT 82 (357)
T ss_dssp ETTEEEEECGG-GTTCEEEEETTSSSCCEEECCCCTTCCCB--S-----CE--EEEET----T-EEEEECCEEECTTSCE
T ss_pred ECCEEEEEeCc-CCCeEEEEccccCCCCeeECCCCCCCcCc--c-----ce--EEEEC----C-EEEEEcCCCCCCCccc
Confidence 46666655532 24578999998 49999999877 3321 1 11 12222 2 466652 2 1 1
Q ss_pred CCcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCC----------------------
Q 042334 183 RNNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGS---------------------- 238 (266)
Q Consensus 183 ~~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~---------------------- 238 (266)
.....+++|+..++.|+.+ .++........ .+.++|.||.+ ..+...
T Consensus 83 ~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (357)
T 2uvk_A 83 QVFNDVHKYNPKTNSWVKLMSHAPMGMAGHV---------TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKIN 153 (357)
T ss_dssp EECCCEEEEETTTTEEEECSCCCSSCCSSEE---------EEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeeccEEEEeCCCCcEEECCCCCCcccccce---------EEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhh
Confidence 1245799999999999998 44412222222 56799999998 322100
Q ss_pred -----------CCccEEEEEEcCCCeeccc-CCCC
Q 042334 239 -----------DHEARIISFDFKNEQLNET-PLPD 261 (266)
Q Consensus 239 -----------~~~~~il~fD~~~~~~~~i-~lP~ 261 (266)
.....+..||+.+.+|+.+ ++|.
T Consensus 154 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 188 (357)
T 2uvk_A 154 AHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPW 188 (357)
T ss_dssp HHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSS
T ss_pred hhhccccccccCCcccEEEEeCCCCcEEECCCCCC
Confidence 0125899999999999988 5554
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.19 E-value=0.0022 Score=60.61 Aligned_cols=128 Identities=16% Similarity=0.134 Sum_probs=78.7
Q ss_pred CeEEEeeeccCCceeEEEEcccccceeccCCC---CCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--C--CCcc
Q 042334 114 YGLLLLQDCWAGRNKLFLCNPLRGEVLELPKP---LQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--P--RNNL 186 (266)
Q Consensus 114 ~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~---~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~--~~~~ 186 (266)
+|.|.+..+......+.++||.|.+|..+++. +..+ . ...+..++.. .-+|+++... . ....
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r---~------~~~a~v~~~~--~~~iyv~GG~~~~~~~~~~ 568 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS---L------VSAGLEFDPV--SKQGIILGGGFMDQTTVSD 568 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC---C------BSCEEEEETT--TTEEEEECCBCTTSSCBCC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc---c------ceeEEEEeCC--CCEEEEECCcCCCCCeeeC
Confidence 66665555431222799999999999999873 3221 1 1122444432 2356666322 2 2346
Q ss_pred eEEEEEcCCCC------cccc-CCCccccccchhhhccccccceEEc-CeEeee-eccCCC--CCccEEEEEEcCCCeec
Q 042334 187 EIEVYTLGTHS------WRHA-SPSSIRLSNNKLQLQCLSEFGLSAY-GDMHWK-NWEFGS--DHEARIISFDFKNEQLN 255 (266)
Q Consensus 187 ~~~vyss~t~~------W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~-G~~yw~-~~~~~~--~~~~~il~fD~~~~~~~ 255 (266)
.+++|+..++. |+.+ ..|....... ..+.++ |.||.+ ...... .....|..||+.+.+|.
T Consensus 569 ~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~---------~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 569 KAIIFKYDAENATEPITVIKKLQHPLFQRYGS---------QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEEEECTTCSSCCEEEEEEEECGGGCCBSC---------EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cEEEEEccCCccccceEEEEcCCCCCCCcccc---------eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 89999999999 5555 3332222222 257788 999999 332111 23567999999999999
Q ss_pred ccCCCC
Q 042334 256 ETPLPD 261 (266)
Q Consensus 256 ~i~lP~ 261 (266)
.+++|.
T Consensus 640 ~~~~p~ 645 (695)
T 2zwa_A 640 SIPISR 645 (695)
T ss_dssp ECCCCH
T ss_pred Eeeccc
Confidence 888774
No 24
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.01 E-value=0.003 Score=59.03 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=75.3
Q ss_pred CeEEEeeeccC---------CceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCC
Q 042334 114 YGLLLLQDCWA---------GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRN 184 (266)
Q Consensus 114 ~Glll~~~~~~---------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~ 184 (266)
+|.|++..+.. ....+.++||.|++|..++.++..+.. ...+..+.. +-+|+++....
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~--------~~~~~~~~~---~g~lyv~GG~~-- 263 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM--------FCPGISMDG---NGQIVVTGGND-- 263 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC--------SSCEEEECT---TSCEEEECSSS--
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC--------ccccccCCC---CCCEEEeCCCC--
Confidence 77777664321 123688999999999999876543221 111122111 22455653322
Q ss_pred cceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEE-cCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334 185 NLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSA-YGDMHWK-NWEFGSDHEARIISFDFKNEQLNET 257 (266)
Q Consensus 185 ~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~-~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i 257 (266)
...+++|+..++.|..+ .+|.... ... .+.+ +|++|.+ ...........+..||+.+.+|..+
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~~~~R~-~~s---------~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDMQVARG-YQS---------SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCCSSCCS-SCE---------EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred CCceEEecCcCCceeECCCCCcccc-ccc---------eEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 22799999999999988 4443222 221 4666 9999999 4222222345689999999999986
No 25
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.95 E-value=0.00035 Score=64.20 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHhccC-ChhhHHHHHhhhHhHHHHh
Q 042334 6 VKVPADIVYEIFIRL-PVKSLMRFRSISKSWRDII 39 (266)
Q Consensus 6 ~~LP~Dll~~IL~rL-P~~~l~r~~~VcK~Wr~~i 39 (266)
..||+|++.+||.+| |.+++.+++.|||+|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 469999999999999 8999999999999999884
No 26
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.95 E-value=0.0049 Score=58.18 Aligned_cols=121 Identities=11% Similarity=0.106 Sum_probs=73.0
Q ss_pred CeEEEeeecc--CCceeEEEEcccccceeccC-CCC---CCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CC-C
Q 042334 114 YGLLLLQDCW--AGRNKLFLCNPLRGEVLELP-KPL---QDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PR-N 184 (266)
Q Consensus 114 ~Glll~~~~~--~~~~~~~V~NP~T~~~~~lP-~~~---~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~-~ 184 (266)
+|.|.+..+. .....++++||.|++|..++ +.+ ...++..+ . ...++. +-+|+++... .. .
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-----s--~~~~~~---~~~lyv~GG~~~~~~~ 466 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-----T--FTTISR---NNQLLLIGGRKAPHQG 466 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-----E--EEEETT---TTEEEEECCBSSTTCB
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-----E--EEEEcc---CCEEEEEcCCCCCCCc
Confidence 4445444432 12356899999999999998 532 11111111 1 122210 1246666322 21 3
Q ss_pred cceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEE-cCeEeee-eccCCCCCccEEEEEEcCCCeecccC
Q 042334 185 NLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSA-YGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP 258 (266)
Q Consensus 185 ~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~-~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~ 258 (266)
...+++|+..++.|+.+ .+|.... ... .+.+ +|.||.+ ..... . .+..||+.+.+|..+.
T Consensus 467 ~~dv~~yd~~t~~W~~~~~~p~~R~-~h~---------~~~~~~~~iyv~GG~~~~---~-~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 467 LSDNWIFDMKTREWSMIKSLSHTRF-RHS---------ACSLPDGNVLILGGVTEG---P-AMLLYNVTEEIFKDVT 529 (695)
T ss_dssp CCCCEEEETTTTEEEECCCCSBCCB-SCE---------EEECTTSCEEEECCBCSS---C-SEEEEETTTTEEEECC
T ss_pred cccEEEEeCCCCcEEECCCCCCCcc-cce---------EEEEcCCEEEEECCCCCC---C-CEEEEECCCCceEEcc
Confidence 46799999999999998 5553222 221 4554 9999999 43311 1 7999999999999885
No 27
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.41 E-value=0.039 Score=51.47 Aligned_cols=109 Identities=6% Similarity=-0.074 Sum_probs=64.5
Q ss_pred EEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec-C-------CCcceEEEEEcCCCCccc
Q 042334 129 LFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE-P-------RNNLEIEVYTLGTHSWRH 200 (266)
Q Consensus 129 ~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~-~-------~~~~~~~vyss~t~~W~~ 200 (266)
+..++|.+++|..++++|.. .. +..+-+. +=||+++... . .....+.+|+..++.|+.
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~----------~~--~~av~~~--~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~ 233 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIV----------PA--AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD 233 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSC----------CS--EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC
T ss_pred cccCCCCCCeeeeeccCCCC----------ce--eEEEEec--CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe
Confidence 34458888999887776542 11 1222221 2355555322 1 122468999999999998
Q ss_pred c-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCCC
Q 042334 201 A-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDFR 263 (266)
Q Consensus 201 ~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~ 263 (266)
. .+|......+. ...+..+|.||.+ ... ...+..||+.+.+|..+ ++|..|
T Consensus 234 ~~~~~~~~~~~~~-------~~~~~~~g~lyv~GG~~-----~~~v~~yd~~t~~W~~~~~~~~~R 287 (656)
T 1k3i_A 234 RTVTVTKHDMFCP-------GISMDGNGQIVVTGGND-----AKKTSLYDSSSDSWIPGPDMQVAR 287 (656)
T ss_dssp CEEEECSCCCSSC-------EEEECTTSCEEEECSSS-----TTCEEEEEGGGTEEEECCCCSSCC
T ss_pred CcccCCCCCCccc-------cccCCCCCCEEEeCCCC-----CCceEEecCcCCceeECCCCCccc
Confidence 7 33332222221 0123468999998 433 23699999999999987 555443
No 28
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=61.38 E-value=13 Score=25.98 Aligned_cols=55 Identities=9% Similarity=0.196 Sum_probs=35.6
Q ss_pred ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-ecCCCcceEEEE
Q 042334 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-REPRNNLEIEVY 191 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~~~~~~vy 191 (266)
...+++++|.|+.| +|..... ....+.+..|...+.|+|+... .+......+++|
T Consensus 10 ~A~V~~~d~~~~~W--~p~~~~~---------g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~ 65 (112)
T 1evh_A 10 RAAVMVYDDANKKW--VPAGGST---------GFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIP 65 (112)
T ss_dssp EEEEEEEETTTTEE--EEGGGCC---------SCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEC
T ss_pred EEEEEEEcCCCCce--EECCCCC---------CceEEEEEEECCCCEEEEEEEECCCCcEEEeeEec
Confidence 55789999999965 4544211 0234678889888899999874 333334455554
No 29
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=59.92 E-value=14 Score=25.99 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=36.3
Q ss_pred ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-e-cCCCcceEEEEE
Q 042334 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-R-EPRNNLEIEVYT 192 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~-~~~~~~~~~vys 192 (266)
...+++++|.|++|. |.....+ ....+.+..|...+.|+|+..- . +......+++|.
T Consensus 10 ~A~V~~~d~~~~~W~--p~~~g~~--------gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~ 68 (115)
T 1egx_A 10 RATVMLYDDGNKRWL--PAGTGPQ--------AFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVR 68 (115)
T ss_dssp EEECBEECTTTSSCC--BSSCSCC--------CCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECS
T ss_pred EEEEEEEcCCCCcee--ECCCCCC--------CccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcC
Confidence 456888999999964 5442100 0234678889888999999874 2 333345555553
No 30
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=58.34 E-value=43 Score=27.78 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=55.1
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|.|.+.. ....++.+|+.|++.++--..... .. . ....+ ++ +|++... .-.+..|+
T Consensus 102 ~~~~v~v~~---~~g~l~a~d~~tG~~~W~~~~~~~----~~-----~--~p~~~---~~-~v~v~~~----~g~l~~~d 159 (376)
T 3q7m_A 102 SGGHVYIGS---EKAQVYALNTSDGTVAWQTKVAGE----AL-----S--RPVVS---DG-LVLIHTS----NGQLQALN 159 (376)
T ss_dssp ETTEEEEEE---TTSEEEEEETTTCCEEEEEECSSC----CC-----S--CCEEE---TT-EEEEECT----TSEEEEEE
T ss_pred eCCEEEEEc---CCCEEEEEECCCCCEEEEEeCCCc----eE-----c--CCEEE---CC-EEEEEcC----CCeEEEEE
Confidence 678777776 467899999999875532111110 00 0 00111 12 3333221 23677788
Q ss_pred cCCC--Ccccc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCe
Q 042334 193 LGTH--SWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQ 253 (266)
Q Consensus 193 s~t~--~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~ 253 (266)
..++ .|+.. ..+........ .++..+|.+|....+ ..|.++|..+.+
T Consensus 160 ~~tG~~~W~~~~~~~~~~~~~~~--------~~~~~~~~v~~g~~~------g~l~~~d~~tG~ 209 (376)
T 3q7m_A 160 EADGAVKWTVNLDMPSLSLRGES--------APTTAFGAAVVGGDN------GRVSAVLMEQGQ 209 (376)
T ss_dssp TTTCCEEEEEECCC-----CCCC--------CCEEETTEEEECCTT------TEEEEEETTTCC
T ss_pred CCCCcEEEEEeCCCCceeecCCC--------CcEEECCEEEEEcCC------CEEEEEECCCCc
Confidence 7766 48765 22221111111 267778887775322 479999987543
No 31
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=51.98 E-value=57 Score=30.12 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=60.5
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|.|.+.. ....++.+|+.|++.++--...................+..++. =+|+.... .-.+..++
T Consensus 65 ~~g~vyv~~---~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~v~~~----dg~l~alD 133 (668)
T 1kv9_A 65 HDGVIYTSM---SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG----DKVYVGTL----DGRLIALD 133 (668)
T ss_dssp ETTEEEEEE---GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB----TEEEEECT----TSEEEEEE
T ss_pred ECCEEEEEC---CCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEEC----CEEEEEcC----CCEEEEEE
Confidence 577776666 35678888999887554322211100000000000011122221 13443321 23566777
Q ss_pred cCCC--Ccccc-CCCc-cccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC--eecc
Q 042334 193 LGTH--SWRHA-SPSS-IRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE--QLNE 256 (266)
Q Consensus 193 s~t~--~W~~~-~~p~-~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~--~~~~ 256 (266)
..|+ .|+.. ..+. ...... .++..+|.+|.-..+.+-.....|.+||.++. .|+.
T Consensus 134 ~~tG~~~W~~~~~~~~~~~~~~~---------~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 134 AKTGKAIWSQQTTDPAKPYSITG---------APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp TTTCCEEEEEECSCTTSSCBCCS---------CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCCCCEeeeeccCCCCCcceecC---------CCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 7665 58765 2111 111122 37888999988733211122468999999754 4654
No 32
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=51.84 E-value=1.1e+02 Score=25.97 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=19.5
Q ss_pred ceEE---cCeEeeeeccCCCCCccEEEEEEcCCCee
Q 042334 222 GLSA---YGDMHWKNWEFGSDHEARIISFDFKNEQL 254 (266)
Q Consensus 222 ~v~~---~G~~yw~~~~~~~~~~~~il~fD~~~~~~ 254 (266)
++.+ +|.|||.... ...|.++|+....-
T Consensus 250 glavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSK-----LHSISSIDVNGGNR 280 (400)
T ss_dssp EEEEETTTTEEEEEETT-----TTEEEEEETTSCCC
T ss_pred EEEEEeCCCEEEEEECC-----CCEEEEEeCCCCcc
Confidence 5554 4899999444 46899999876543
No 33
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=48.49 E-value=1.2e+02 Score=28.88 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=18.9
Q ss_pred ceEE---cCeEeeeeccCCCCCccEEEEEEcCCCe
Q 042334 222 GLSA---YGDMHWKNWEFGSDHEARIISFDFKNEQ 253 (266)
Q Consensus 222 ~v~~---~G~~yw~~~~~~~~~~~~il~fD~~~~~ 253 (266)
++.+ +|.|||...+ ...|.++|+....
T Consensus 562 GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 562 GITLDLLSGRLYWVDSK-----LHSISSIDVNGGN 591 (791)
T ss_dssp EEEEETTTTEEEEEETT-----TTEEEEEETTSCS
T ss_pred EEEEecCCCeEEEEeCC-----CCcEEEEecCCCc
Confidence 5554 4899999444 4589999986543
No 34
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=48.15 E-value=95 Score=24.09 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=57.1
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|-+.+... ....++++++ +++...++.... . ....++.+|+. +. +.+... ..-.+.+|+
T Consensus 150 ~~g~l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~-----~-----~~~~~i~~~~~-g~--l~v~~~---~~~~i~~~~ 210 (299)
T 2z2n_A 150 SDNALWFTEN--QNNAIGRITE-SGDITEFKIPTP-----A-----SGPVGITKGND-DA--LWFVEI---IGNKIGRIT 210 (299)
T ss_dssp TTSCEEEEET--TTTEEEEECT-TCCEEEEECSST-----T-----CCEEEEEECTT-SS--EEEEET---TTTEEEEEC
T ss_pred CCCCEEEEeC--CCCEEEEEcC-CCcEEEeeCCCC-----C-----CcceeEEECCC-CC--EEEEcc---CCceEEEEC
Confidence 3555555442 3457888888 777665422110 0 12346667664 22 222211 133677777
Q ss_pred cCCCCccccCCCccccccchhhhccccccceEE--cCeEeeeeccCCCCCccEEEEEEcCCCeecccCCC
Q 042334 193 LGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSA--YGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLP 260 (266)
Q Consensus 193 s~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~lP 260 (266)
. ++.......+...... .++.+ +|.+|..... ...|..||. +.++..+.+|
T Consensus 211 ~-~g~~~~~~~~~~~~~~----------~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~ 263 (299)
T 2z2n_A 211 T-SGEITEFKIPTPNARP----------HAITAGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEYPIQ 263 (299)
T ss_dssp T-TCCEEEEECSSTTCCE----------EEEEECSTTCEEEEETT-----TTEEEEEET-TTEEEEEECS
T ss_pred C-CCcEEEEECCCCCCCc----------eeEEECCCCCEEEeccC-----CceEEEECC-CCceEEEeCC
Confidence 7 6665443222111111 14444 5776665433 458999998 4566666555
No 35
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=47.78 E-value=37 Score=23.96 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=29.3
Q ss_pred ceeEEEEccccc-ceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe
Q 042334 126 RNKLFLCNPLRG-EVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG 179 (266)
Q Consensus 126 ~~~~~V~NP~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 179 (266)
...++++||.|+ .|. |.... ...+.+.+|...+.|+|+.+.
T Consensus 10 rA~V~~~D~~tk~~W~--p~g~~-----------~~~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 10 RAHVFQIDPNTKKNWV--PTSKH-----------AVTVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEEEECTTTSCSEE--ESCSS-----------CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCCceE--eCCCC-----------ceEEEEEEcCCCCEEEEEEcc
Confidence 567899999996 885 33321 134567788888899999863
No 36
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=47.23 E-value=1.3e+02 Score=25.49 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=37.3
Q ss_pred eeeeecCCCCCeEEEEEeecCCCcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCC
Q 042334 162 YGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDH 240 (266)
Q Consensus 162 ~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~ 240 (266)
.|+.+|+..+ +|++. +.....+++++.....-+.+ ..+.....+.. -.+.++.+||...+
T Consensus 249 ~glavd~~~~--~lY~a---D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~g---------l~v~~~~lywtd~~----- 309 (400)
T 3p5b_L 249 NGITLDLLSG--RLYWV---DSKLHSISSIDVNGGNRKTILEDEKRLAHPFS---------LAVFEDKVFWTDII----- 309 (400)
T ss_dssp EEEEEETTTT--EEEEE---ETTTTEEEEEETTSCCCEEEEECSSTTSSEEE---------EEEETTEEEEEESS-----
T ss_pred EEEEEEeCCC--EEEEE---ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEE---------EEEeCCEEEEecCC-----
Confidence 4677776533 33333 11245778888754332222 22222222221 23467799999544
Q ss_pred ccEEEEEEcCCC
Q 042334 241 EARIISFDFKNE 252 (266)
Q Consensus 241 ~~~il~fD~~~~ 252 (266)
...|..+|..+.
T Consensus 310 ~~~V~~~~~~~G 321 (400)
T 3p5b_L 310 NEAIFSANRLTG 321 (400)
T ss_dssp SCSEEEEESSSC
T ss_pred CCeEEEEEcCCC
Confidence 457889985443
No 37
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=45.20 E-value=1.1e+02 Score=25.25 Aligned_cols=111 Identities=8% Similarity=0.038 Sum_probs=54.4
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCC--CCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCS--KDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEV 190 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~--~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~v 190 (266)
.+|.|.+.. ....++.+|+.|++.++--....... .... .........+. + +|++... .-.+..
T Consensus 52 ~~~~v~~~~---~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~---~-~v~v~~~----~g~l~a 117 (376)
T 3q7m_A 52 ADNVVYAAD---RAGLVKALNADDGKEIWSVSLAEKDGWFSKEP---ALLSGGVTVSG---G-HVYIGSE----KAQVYA 117 (376)
T ss_dssp ETTEEEEEC---TTSEEEEEETTTCCEEEEEECCC---CCSCCC---CCEEEEEEEET---T-EEEEEET----TSEEEE
T ss_pred ECCEEEEEc---CCCeEEEEEccCCceeeeecCccccccccccC---cccccCceEeC---C-EEEEEcC----CCEEEE
Confidence 456665555 35578888888887654322211000 0000 01111222221 2 3333322 236777
Q ss_pred EEcCCC--CccccCCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC--eec
Q 042334 191 YTLGTH--SWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE--QLN 255 (266)
Q Consensus 191 yss~t~--~W~~~~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~--~~~ 255 (266)
++..++ .|+... +.. ... .++..+|.+|....+ ..|.+||.++. .|+
T Consensus 118 ~d~~tG~~~W~~~~-~~~--~~~---------~p~~~~~~v~v~~~~------g~l~~~d~~tG~~~W~ 168 (376)
T 3q7m_A 118 LNTSDGTVAWQTKV-AGE--ALS---------RPVVSDGLVLIHTSN------GQLQALNEADGAVKWT 168 (376)
T ss_dssp EETTTCCEEEEEEC-SSC--CCS---------CCEEETTEEEEECTT------SEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEEeC-CCc--eEc---------CCEEECCEEEEEcCC------CeEEEEECCCCcEEEE
Confidence 887766 476541 111 111 267778877776432 37999998655 354
No 38
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.71 E-value=22 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=19.9
Q ss_pred CceeEEEEcccccceeccCCCCCC
Q 042334 125 GRNKLFLCNPLRGEVLELPKPLQD 148 (266)
Q Consensus 125 ~~~~~~V~NP~T~~~~~lP~~~~~ 148 (266)
.+++.|.+||.|++...--|....
T Consensus 28 ~dGR~fyyN~~Tk~S~WekP~eLk 51 (73)
T 2dk7_A 28 GDERVFFYNPTTRLSMWDRPDDLI 51 (73)
T ss_dssp SSSCEEEEETTTTEECSSCCTTTT
T ss_pred CCCCEEEecCcccceeccCChHhc
Confidence 578899999999998887776654
No 39
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=44.54 E-value=2.1e+02 Score=27.08 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=17.6
Q ss_pred EEcCeEeeeeccCCCCCccEEEEEEcCCC
Q 042334 224 SAYGDMHWKNWEFGSDHEARIISFDFKNE 252 (266)
Q Consensus 224 ~~~G~~yw~~~~~~~~~~~~il~fD~~~~ 252 (266)
+.++.|||.... ...|.++|..+.
T Consensus 610 v~~~~lYwtD~~-----~~~I~~~dk~tG 633 (791)
T 3m0c_C 610 VFEDKVFWTDII-----NEAIFSANRLTG 633 (791)
T ss_dssp EETTEEEEEETT-----TTEEEEEETTTC
T ss_pred EeCCEEEEEECC-----CCEEEEEeCCCC
Confidence 467799999554 468999986544
No 40
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=43.98 E-value=1.3e+02 Score=24.35 Aligned_cols=110 Identities=15% Similarity=0.027 Sum_probs=61.4
Q ss_pred EEeccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcc
Q 042334 107 VFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNL 186 (266)
Q Consensus 107 ~~~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~ 186 (266)
.-+.- .+|.|....+......+.+.++.|++...--+.+. .....|+..+. + +|..+... .-
T Consensus 46 qGL~~-~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----------~~FgeGit~~g---~-~ly~ltw~---~~ 107 (262)
T 3nol_A 46 EGFFY-RNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----------RYFGEGISDWK---D-KIVGLTWK---NG 107 (262)
T ss_dssp EEEEE-ETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----------TCCEEEEEEET---T-EEEEEESS---SS
T ss_pred ceEEE-ECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----------ccceeEEEEeC---C-EEEEEEee---CC
Confidence 33444 56777666643345689999999987543222221 11233455543 2 55555322 44
Q ss_pred eEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC
Q 042334 187 EIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE 252 (266)
Q Consensus 187 ~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~ 252 (266)
.+.|||..+..=... ..+.. . -++..+|...|.+.+ ...|..+|+++.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~e---G----------~glt~dg~~L~~SdG-----s~~i~~iDp~T~ 156 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGE---G----------WGLTHNDQYLIMSDG-----TPVLRFLDPESL 156 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSC---C----------CCEEECSSCEEECCS-----SSEEEEECTTTC
T ss_pred EEEEEECccCcEEEEEECCCC---c----------eEEecCCCEEEEECC-----CCeEEEEcCCCC
Confidence 788999887653222 32221 1 266777766666444 357888888753
No 41
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=43.70 E-value=35 Score=24.30 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=31.3
Q ss_pred ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeee---cCCCCCeEEEEEe-ecCCCcceEEEE
Q 042334 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGF---DSATNSYKIVRLG-REPRNNLEIEVY 191 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~---d~~~~~ykvv~~~-~~~~~~~~~~vy 191 (266)
...++++||.|+.|...-.. . . +...+.+.. |...+.|+|+... .+......+++|
T Consensus 19 ~A~Vm~~D~~~~~W~p~~~g--~----l----s~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~ 78 (126)
T 2jp2_A 19 KAVVMTRDDSSGGWFPQEGG--G----I----SRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVR 78 (126)
T ss_dssp EEEEEEECTTSSSSEECSCC--S----C----EEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEES
T ss_pred EEEEeeEcCCCCCEeeCCCC--C----c----ccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEe
Confidence 45689999999877543322 1 1 112223333 5667899999874 233233444443
No 42
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=42.04 E-value=1.2e+02 Score=23.49 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=56.9
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|.+.+... ....++++|| +++...+...... ....++.+|+.. ++..... ....+.+|+
T Consensus 108 ~~g~l~v~~~--~~~~i~~~d~-~g~~~~~~~~~~~----------~~~~~i~~~~~g---~l~v~~~---~~~~i~~~~ 168 (299)
T 2z2n_A 108 PNGDIWFTEM--NGNRIGRITD-DGKIREYELPNKG----------SYPSFITLGSDN---ALWFTEN---QNNAIGRIT 168 (299)
T ss_dssp TTSCEEEEET--TTTEEEEECT-TCCEEEEECSSTT----------CCEEEEEECTTS---CEEEEET---TTTEEEEEC
T ss_pred CCCCEEEEec--CCceEEEECC-CCCEEEecCCCCC----------CCCceEEEcCCC---CEEEEeC---CCCEEEEEc
Confidence 4666655542 3567888898 7765544322110 123466666542 2222211 123566777
Q ss_pred cCCCCccccCCCccccccchhhhccccccceEE--cCeEeeeeccCCCCCccEEEEEEcCCCeecccCCC
Q 042334 193 LGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSA--YGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLP 260 (266)
Q Consensus 193 s~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~lP 260 (266)
. ++.......+...... .++.+ +|.+|+.... ...|..||. +.++..+.+|
T Consensus 169 ~-~g~~~~~~~~~~~~~~----------~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~ 221 (299)
T 2z2n_A 169 E-SGDITEFKIPTPASGP----------VGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFKIP 221 (299)
T ss_dssp T-TCCEEEEECSSTTCCE----------EEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECS
T ss_pred C-CCcEEEeeCCCCCCcc----------eeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEECC
Confidence 6 5555443222111111 13444 4777665443 357899998 6666655444
No 43
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=40.93 E-value=98 Score=28.65 Aligned_cols=125 Identities=10% Similarity=0.001 Sum_probs=61.1
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|.|.+.. ....++.+|+.||+.++--............-......+..++. =+|+.... .-.+..++
T Consensus 69 ~~g~vyv~~---~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~v~v~~~----dg~l~AlD 137 (689)
T 1yiq_A 69 VDGVMYTTG---PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK----GKVYVGVL----DGRLEAID 137 (689)
T ss_dssp ETTEEEEEC---GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET----TEEEEECT----TSEEEEEE
T ss_pred ECCEEEEEc---CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC----CEEEEEcc----CCEEEEEE
Confidence 477776665 35678888999887554322211100000000000011222221 23443321 23566677
Q ss_pred cCCC--CccccCC-C-cc-ccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC--eeccc
Q 042334 193 LGTH--SWRHASP-S-SI-RLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE--QLNET 257 (266)
Q Consensus 193 s~t~--~W~~~~~-p-~~-~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~--~~~~i 257 (266)
..|+ .|+.... . .. ..... .++..+|.+|.-..+.+......|.+||.++. .|+.-
T Consensus 138 a~TG~~~W~~~~~~~~~~~~~~~~---------sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 138 AKTGQRAWSVDTRADHKRSYTITG---------APRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTTCCEEEEEECCSCTTSCCBCCS---------CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCCEeeeecCcCCCCCCccccC---------CcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 7665 5876521 1 11 11112 37888999988732211112468999999765 46543
No 44
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=40.76 E-value=15 Score=21.16 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=11.0
Q ss_pred CCCHHHHHHHhccC
Q 042334 7 KVPADIVYEIFIRL 20 (266)
Q Consensus 7 ~LP~Dll~~IL~rL 20 (266)
.||.|+.+|||+--
T Consensus 23 ~LP~dIQ~Ells~~ 36 (48)
T 2kwv_A 23 QLPADIQEEILSGK 36 (48)
T ss_dssp TSCHHHHHHHTTCC
T ss_pred HCcHHHHHHHHhcc
Confidence 58888888888754
No 45
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=39.98 E-value=1.4e+02 Score=27.75 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=17.5
Q ss_pred EEcCeEeeeeccCCCCCccEEEEEEcCCCe
Q 042334 224 SAYGDMHWKNWEFGSDHEARIISFDFKNEQ 253 (266)
Q Consensus 224 ~~~G~~yw~~~~~~~~~~~~il~fD~~~~~ 253 (266)
+-++.+||.... ...|.++|..+.+
T Consensus 592 vd~~~lywtd~~-----~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 592 VFEDKVFWTDII-----NEAIFSANRLTGS 616 (699)
T ss_dssp EETTEEEEECST-----TTCEEEEETTTEE
T ss_pred EECCEEEEEeCC-----CCeEEEEEccCCC
Confidence 345689999544 4579999986544
No 46
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=38.47 E-value=54 Score=24.63 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=28.8
Q ss_pred ceeEEEEccccc-ceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe
Q 042334 126 RNKLFLCNPLRG-EVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG 179 (266)
Q Consensus 126 ~~~~~V~NP~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 179 (266)
...++++||.|+ .|. |..... ..+.+.+|...+.|+|+.+.
T Consensus 15 rA~Vm~~D~~tk~~Wv--P~g~~~-----------~~V~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 15 RAHVFQIDPNTKKNWV--PTSKHA-----------VTVSYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEEEECTTSSCCSE--ESCSSC-----------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCCCcee--ecCCCC-----------eEEEEEEcCCCCEEEEEEcc
Confidence 457899999997 775 332211 24466788888899999864
No 47
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=37.74 E-value=2.3e+02 Score=25.82 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=19.3
Q ss_pred eEEcCeEeeeeccCCCCCccEEEEEEcCCCe
Q 042334 223 LSAYGDMHWKNWEFGSDHEARIISFDFKNEQ 253 (266)
Q Consensus 223 v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~ 253 (266)
...+|.+||.... ...|..+|..+.+
T Consensus 526 av~~~~ly~tD~~-----~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 526 TVFENWLYWIDKQ-----QQMIEKIDMTGRE 551 (628)
T ss_dssp EEETTEEEEEETT-----TTEEEEEETTSSS
T ss_pred EEECCEEEEEECC-----CCeEEEEECcCCC
Confidence 3567899999554 4589999987554
No 48
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=36.94 E-value=1.8e+02 Score=26.98 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=19.0
Q ss_pred ceEEc---CeEeeeeccCCCCCccEEEEEEcCCC
Q 042334 222 GLSAY---GDMHWKNWEFGSDHEARIISFDFKNE 252 (266)
Q Consensus 222 ~v~~~---G~~yw~~~~~~~~~~~~il~fD~~~~ 252 (266)
++.++ |.|||.... ...|.+||+...
T Consensus 544 Glavd~~~~~LY~aD~~-----~~~I~~~d~dG~ 572 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSK-----LHSISSIDVNGG 572 (699)
T ss_dssp CEEECTTTCCEEEEETT-----TTEEEEECSSSS
T ss_pred EEEEeccCCEEEEEecC-----CCeEEEEccCCC
Confidence 66664 899999444 468999998654
No 49
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=36.69 E-value=61 Score=27.29 Aligned_cols=23 Identities=4% Similarity=0.016 Sum_probs=17.1
Q ss_pred EcCeEeeeeccCCCCCccEEEEEEcCCCe
Q 042334 225 AYGDMHWKNWEFGSDHEARIISFDFKNEQ 253 (266)
Q Consensus 225 ~~G~~yw~~~~~~~~~~~~il~fD~~~~~ 253 (266)
.+|.+|.-..+ ..+.++|+.+.+
T Consensus 110 ~~g~Vy~Gs~~------g~l~ald~~tG~ 132 (339)
T 2be1_A 110 EDEKVYTGSMR------TIMYTINMLNGE 132 (339)
T ss_dssp CCEEEEECEEE------EEEEEEETTTCC
T ss_pred cCCEEEEEecC------CEEEEEECCCCc
Confidence 78899988332 379999987653
No 50
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=35.28 E-value=1.4e+02 Score=23.31 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=20.2
Q ss_pred cccCeEEEeeeccCCceeEEEEcccccceeccC
Q 042334 111 FVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELP 143 (266)
Q Consensus 111 s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP 143 (266)
| .+|+|-+.. +..+.|||..|++...+-
T Consensus 34 S-~~~~lAvg~----D~tV~iWd~~tg~~~~~~ 61 (318)
T 4ggc_A 34 S-SGNVLAVAL----DNSVYLWSASSGDILQLL 61 (318)
T ss_dssp C-TTSEEEEEE----TTEEEEEETTTCCEEEEE
T ss_pred C-CCCEEEEEe----CCEEEEEECCCCCEEEEE
Confidence 5 677665443 678999999999876543
No 51
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=32.59 E-value=2e+02 Score=23.26 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=37.3
Q ss_pred eeeeecCCCCCeEEEEEeecCCCcceEEEEEcCCCCcccc-CCCccccccchhhhccccccce-EEcCeEeeeeccCCCC
Q 042334 162 YGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGL-SAYGDMHWKNWEFGSD 239 (266)
Q Consensus 162 ~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v-~~~G~~yw~~~~~~~~ 239 (266)
.++.+|+..+ ++++.- .....+++|+..+..=+.+ ..+.....+. ++ +-+|.+||...+
T Consensus 167 ~gla~d~~~~--~lY~~D---~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~----------giav~~~~ly~~d~~---- 227 (316)
T 1ijq_A 167 NGITLDLLSG--RLYWVD---SKLHSISSIDVNGGNRKTILEDEKRLAHPF----------SLAVFEDKVFWTDII---- 227 (316)
T ss_dssp EEEEEETTTT--EEEEEE---TTTTEEEEEETTSCSCEEEEECTTTTSSEE----------EEEEETTEEEEEETT----
T ss_pred eEEEEeccCC--EEEEEE---CCCCeEEEEecCCCceEEEeecCCccCCcE----------EEEEECCEEEEEECC----
Confidence 4677776433 333321 1245778888764322222 2111111122 32 346899999554
Q ss_pred CccEEEEEEcCCCe
Q 042334 240 HEARIISFDFKNEQ 253 (266)
Q Consensus 240 ~~~~il~fD~~~~~ 253 (266)
...|..+|..+.+
T Consensus 228 -~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 228 -NEAIFSANRLTGS 240 (316)
T ss_dssp -TTEEEEEETTTCC
T ss_pred -CCeEEEEeCCCCc
Confidence 4689999975443
No 52
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=31.69 E-value=1.7e+02 Score=26.91 Aligned_cols=121 Identities=11% Similarity=0.009 Sum_probs=61.2
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCC----CCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSK----DFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEI 188 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~----~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~ 188 (266)
.+|.|.+.. ....++.+|+.||+.++--........ ... ....+..++. -+|+.... .-.+
T Consensus 76 ~~g~vyv~~---~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~~a~~~----~~v~v~~~----dg~l 140 (677)
T 1kb0_A 76 VDGIMYVSA---SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD----VVNRGVALWK----GKVYVGAW----DGRL 140 (677)
T ss_dssp ETTEEEEEC---GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC----SCCCCCEEET----TEEEEECT----TSEE
T ss_pred ECCEEEEEC---CCCeEEEEECCCCcEEEEEcCCCCcccccccccc----CCCCCceEEC----CEEEEEcC----CCEE
Confidence 577776666 356788889999876543222211000 000 0111222222 23444321 2356
Q ss_pred EEEEcCCC--Ccccc-C-CCcc-ccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC--eeccc
Q 042334 189 EVYTLGTH--SWRHA-S-PSSI-RLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE--QLNET 257 (266)
Q Consensus 189 ~vyss~t~--~W~~~-~-~p~~-~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~--~~~~i 257 (266)
..++..|+ .|+.. . -+.. ..... .++..+|.+|....+.+......|.+||.++. .|+.-
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~---------~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITG---------APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCS---------CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEEeeecCCcCcCcCccccc---------CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 66777665 57754 2 1111 11111 37888999988733211112468999998755 46543
No 53
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=31.56 E-value=34 Score=24.06 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=22.2
Q ss_pred ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeee---cCCCCCeEEEEEe
Q 042334 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGF---DSATNSYKIVRLG 179 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~---d~~~~~ykvv~~~ 179 (266)
...++++||.|+.|...-.. . . +...+.+.. |...+.|+|+...
T Consensus 10 ~A~V~~~d~~~~~W~p~~~g--~----l----s~v~i~~~~~~~d~~~~~yrIv~~~ 56 (118)
T 1xod_A 10 RAVVMTRDDSSGGWLQLGGG--G----L----SSVTVSKTLQPGDSGGTEFLVHGER 56 (118)
T ss_dssp EEEEEEECSSSSCEEEGGGC--C----C----EEEEEECC---------CCEEEEEE
T ss_pred EEEEeeEcCCCCCEeeCCCC--C----c----ccEEEEEecCcCCCCCCEEEEEEEE
Confidence 45688999999977543322 1 1 012222222 5566789999873
No 54
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=30.90 E-value=1.5e+02 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=20.4
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCC
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPK 144 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~ 144 (266)
.+++|-+.. +..++|||..|++...+-.
T Consensus 115 ~~n~lAvgl----d~tV~lWd~~tg~~~~~~~ 142 (420)
T 4gga_A 115 SGNVLAVAL----DNSVYLWSASSGDILQLLQ 142 (420)
T ss_dssp TTSEEEEEE----TTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEe----CCEEEEEECCCCCEEEEEE
Confidence 566665544 6789999999998765533
No 55
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=30.37 E-value=2.4e+02 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=16.5
Q ss_pred EEcCeEeeeeccCCCCCccEEEEEEcC
Q 042334 224 SAYGDMHWKNWEFGSDHEARIISFDFK 250 (266)
Q Consensus 224 ~~~G~~yw~~~~~~~~~~~~il~fD~~ 250 (266)
+.+|.+||...+ ...|..+|..
T Consensus 296 v~~~~ly~td~~-----~~~V~~~~~~ 317 (386)
T 3v65_B 296 VFEDSLYWTDWH-----TKSINSANKF 317 (386)
T ss_dssp EETTEEEEEETT-----TTEEEEEETT
T ss_pred EECCEEEEeeCC-----CCeEEEEECC
Confidence 467899999555 4689999943
No 56
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=29.53 E-value=2.2e+02 Score=22.92 Aligned_cols=110 Identities=12% Similarity=0.036 Sum_probs=54.2
Q ss_pred eccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceE
Q 042334 109 VEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEI 188 (266)
Q Consensus 109 ~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~ 188 (266)
++. .+|.|.+.+. ....+.++++-.+....+-.... ..-.++.+|+..+ ++++.-. +....+
T Consensus 84 vd~-~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~-----------~~P~~iavdp~~g--~ly~~d~--~~~~~I 145 (316)
T 1ijq_A 84 VDW-IHSNIYWTDS--VLGTVSVADTKGVKRKTLFRENG-----------SKPRAIVVDPVHG--FMYWTDW--GTPAKI 145 (316)
T ss_dssp EET-TTTEEEEEET--TTTEEEEEETTSSSEEEEEECTT-----------CCEEEEEEETTTT--EEEEEEC--SSSCEE
T ss_pred Eee-cCCeEEEEEC--CCCEEEEEeCCCCceEEEEECCC-----------CCcceEEeCCCCC--EEEEEcc--CCCCeE
Confidence 344 4555555553 45677788776544333321111 1224677787543 2222211 112456
Q ss_pred EEEEcCCCCcccc-CCCccccccchhhhccccccceEE---cCeEeeeeccCCCCCccEEEEEEcCCCe
Q 042334 189 EVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSA---YGDMHWKNWEFGSDHEARIISFDFKNEQ 253 (266)
Q Consensus 189 ~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~il~fD~~~~~ 253 (266)
++++.....=+.+ .. ....+ .++.+ +|.+||.... ...|.++|+....
T Consensus 146 ~~~~~dG~~~~~~~~~--~~~~P----------~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTE--NIQWP----------NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGN 197 (316)
T ss_dssp EEEETTSCCEEEEECS--SCSCE----------EEEEEETTTTEEEEEETT-----TTEEEEEETTSCS
T ss_pred EEEcCCCCCeEEEEEC--CCCCc----------eEEEEeccCCEEEEEECC-----CCeEEEEecCCCc
Confidence 6666543221111 11 11111 25555 4799999544 4589999987543
No 57
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=28.11 E-value=3.4e+02 Score=24.59 Aligned_cols=124 Identities=13% Similarity=0.119 Sum_probs=59.4
Q ss_pred cCeEEEeeeccCC-ceeEEEEcc-cccceeccCCCCCCC--C--CCCcCCCCcceeeeee--cCCCCCeEEEEEeecCCC
Q 042334 113 AYGLLLLQDCWAG-RNKLFLCNP-LRGEVLELPKPLQDC--S--KDFLLPRSLTSYGIGF--DSATNSYKIVRLGREPRN 184 (266)
Q Consensus 113 ~~Glll~~~~~~~-~~~~~V~NP-~T~~~~~lP~~~~~~--~--~~~~~~~~~~~~~l~~--d~~~~~ykvv~~~~~~~~ 184 (266)
.+|.|.+.. . ...++-.|+ .|++.++--...... . .... ....+..+ +.....-+|++...
T Consensus 61 ~~g~vyv~~---~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~----~~~~g~av~p~~g~~~~rV~v~t~---- 129 (599)
T 1w6s_A 61 VDGKMYIHT---SFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCD----LVNRGLAYWPGDGKTPALILKTQL---- 129 (599)
T ss_dssp ETTEEEEEC---STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSC----SCCCCCEEECCCSSSCCEEEEECT----
T ss_pred ECCEEEEEe---CCCCEEEEEeCCCCCcEEEEECCCCCcccccccccc----ccccceEEEecCCcceeEEEEEcC----
Confidence 466666655 3 456788888 888655432221110 0 0000 01123344 22111122444321
Q ss_pred cceEEEEEcCCC--Ccccc-CCCcc-ccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC--eecc
Q 042334 185 NLEIEVYTLGTH--SWRHA-SPSSI-RLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE--QLNE 256 (266)
Q Consensus 185 ~~~~~vyss~t~--~W~~~-~~p~~-~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~--~~~~ 256 (266)
.-.+..++..|+ .|+.. ..+.. ..... .+++.+|.+|.-....+-.....|.+||.++. .|+.
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~s---------sP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTI---------APYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCS---------CCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeec---------CCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 235566776665 58754 21111 11111 37888999987632100012458999999754 4654
No 58
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=28.02 E-value=1.7e+02 Score=26.36 Aligned_cols=120 Identities=14% Similarity=0.128 Sum_probs=59.0
Q ss_pred cCeEEEeeeccCC-ceeEEEEcc-cccceeccCCCCCCC--C--CCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcc
Q 042334 113 AYGLLLLQDCWAG-RNKLFLCNP-LRGEVLELPKPLQDC--S--KDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNL 186 (266)
Q Consensus 113 ~~Glll~~~~~~~-~~~~~V~NP-~T~~~~~lP~~~~~~--~--~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~ 186 (266)
.+|.|.+.. . ...++..|+ .|++.++--...... . .... ....+..++. =+|++... .-
T Consensus 61 ~~g~vyv~~---~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~v~v~~~----dg 125 (571)
T 2ad6_A 61 IGDMMYVHS---AFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCD----VVDRGLAYGA----GQIVKKQA----NG 125 (571)
T ss_dssp ETTEEEEEC---STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTC----SCCCCCEEET----TEEEEECT----TS
T ss_pred ECCEEEEEe---CCCCEEEEEeCCCCccEEEEEcCCCCcccccccccc----ccccccEEEC----CEEEEEeC----CC
Confidence 567776665 3 467888899 888755432211100 0 0000 0001122221 24444322 23
Q ss_pred eEEEEEcCCC--Ccccc-CCC-ccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC--eecc
Q 042334 187 EIEVYTLGTH--SWRHA-SPS-SIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE--QLNE 256 (266)
Q Consensus 187 ~~~vyss~t~--~W~~~-~~p-~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~--~~~~ 256 (266)
.+..++..++ .|+.. ..+ ....... .++..+|.+|......+......|.+||.++. .|+.
T Consensus 126 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~---------~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 126 HLLALDAKTGKINWEVEVCDPKVGSTLTQ---------APFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEEETTTCCEEEEEECCCGGGTCBCCS---------CCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCEEEEecCCCCCccceecc---------CCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5666777665 68754 211 1111112 37788999988733200011358999999754 5643
No 59
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=27.76 E-value=2.4e+02 Score=22.71 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred eEEeccccCeEEEeeeccCCceeEEEEccccccee-ccCCCC------CCCCCCCcCCCCcceeeeeecCCCCCeEEEEE
Q 042334 106 YVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVL-ELPKPL------QDCSKDFLLPRSLTSYGIGFDSATNSYKIVRL 178 (266)
Q Consensus 106 ~~~~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~-~lP~~~------~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~ 178 (266)
..+..+ .+|.+.+.+. ....+.++|+.|++.. .++... ... ++.+ .+..-.|.-
T Consensus 87 ~~i~~~-~~g~lyv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-------------~i~~---~~~~lyv~~ 147 (328)
T 3dsm_A 87 RYIHFL-SDEKAYVTQI--WDYRIFIINPKTYEITGYIECPDMDMESGSTE-------------QMVQ---YGKYVYVNC 147 (328)
T ss_dssp EEEEEE-ETTEEEEEEB--SCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-------------CEEE---ETTEEEEEE
T ss_pred cEEEEe-CCCeEEEEEC--CCCeEEEEECCCCeEEEEEEcCCccccCCCcc-------------eEEE---ECCEEEEEc
Q ss_pred ee-cCCCcceEEEEEcCCCCccccCCCccccccchhhhccccccceEEcCeEeeeeccCCCCCc----------cEEEEE
Q 042334 179 GR-EPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHE----------ARIISF 247 (266)
Q Consensus 179 ~~-~~~~~~~~~vyss~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~----------~~il~f 247 (266)
.. +. .+.+++..++.....-......... .+--+|.+|....+ . ..|..+
T Consensus 148 ~~~~~----~v~viD~~t~~~~~~i~~g~~p~~i----------~~~~dG~l~v~~~~-----~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 148 WSYQN----RILKIDTETDKVVDELTIGIQPTSL----------VMDKYNKMWTITDG-----GYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp CTTCC----EEEEEETTTTEEEEEEECSSCBCCC----------EECTTSEEEEEBCC-----BCTTCSSCBCCCEEEEE
T ss_pred CCCCC----EEEEEECCCCeEEEEEEcCCCccce----------EEcCCCCEEEEECC-----CccCCccccCCceEEEE
Q ss_pred EcCCCeec-ccCCCCCCCCC
Q 042334 248 DFKNEQLN-ETPLPDFRMPR 266 (266)
Q Consensus 248 D~~~~~~~-~i~lP~~~~~~ 266 (266)
|.++.+.. .+.+|....|+
T Consensus 209 d~~t~~v~~~~~~~~g~~p~ 228 (328)
T 3dsm_A 209 DAETFTVEKQFKFKLGDWPS 228 (328)
T ss_dssp ETTTTEEEEEEECCTTCCCE
T ss_pred ECCCCeEEEEEecCCCCCce
No 60
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=27.69 E-value=2.7e+02 Score=23.28 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=18.6
Q ss_pred ceEE---cCeEeeeeccCCCCCccEEEEEEcCCC
Q 042334 222 GLSA---YGDMHWKNWEFGSDHEARIISFDFKNE 252 (266)
Q Consensus 222 ~v~~---~G~~yw~~~~~~~~~~~~il~fD~~~~ 252 (266)
++.+ +|.|||.... ...|.+||+...
T Consensus 250 Glavd~~~~~lY~aD~~-----~~~I~~~d~dG~ 278 (386)
T 3v65_B 250 GLTIDYAGRRMYWVDAK-----HHVIERANLDGS 278 (386)
T ss_dssp EEEEEGGGTEEEEEETT-----TTEEEEECTTSC
T ss_pred eEEEeCCCCEEEEEECC-----CCEEEEEeCCCC
Confidence 5554 5899999444 458999998753
No 61
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=26.61 E-value=2.4e+02 Score=22.34 Aligned_cols=105 Identities=19% Similarity=0.104 Sum_probs=59.8
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|.|....+......+.+.++.|++...--+.+.. ....|+..+. =+|+.+.. ..-.+.|||
T Consensus 29 ~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~----------~fgeGi~~~~----~~ly~ltw---~~~~v~v~D 91 (243)
T 3mbr_X 29 LRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP----------YFGAGIVAWR----DRLIQLTW---RNHEGFVYD 91 (243)
T ss_dssp ETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT----------CCEEEEEEET----TEEEEEES---SSSEEEEEE
T ss_pred ECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC----------cceeEEEEeC----CEEEEEEe---eCCEEEEEE
Confidence 567777766533456899999999876542222211 1223444442 23444422 144788899
Q ss_pred cCCCCcccc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCC
Q 042334 193 LGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNE 252 (266)
Q Consensus 193 s~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~ 252 (266)
..+..=... ..+.. . -++..+|...|++.+ ...|..+|.++.
T Consensus 92 ~~tl~~~~ti~~~~~---G----------wglt~dg~~L~vSdg-----s~~l~~iDp~t~ 134 (243)
T 3mbr_X 92 LATLTPRARFRYPGE---G----------WALTSDDSHLYMSDG-----TAVIRKLDPDTL 134 (243)
T ss_dssp TTTTEEEEEEECSSC---C----------CEEEECSSCEEEECS-----SSEEEEECTTTC
T ss_pred CCcCcEEEEEeCCCC---c----------eEEeeCCCEEEEECC-----CCeEEEEeCCCC
Confidence 877543222 22211 1 267777776666555 457888888764
No 62
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=25.39 E-value=2.5e+02 Score=22.18 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=38.1
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEE-eecCCCcceEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRL-GREPRNNLEIEVY 191 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~-~~~~~~~~~~~vy 191 (266)
.+|-|.+... ....++++|+.+++...+..... ....++.+|+.. ++++. .........+.+|
T Consensus 54 ~~g~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~-----------~~~~~i~~~~dg---~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 54 RQGQLFLLDV--FEGNIFKINPETKEIKRPFVSHK-----------ANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp TTSCEEEEET--TTCEEEEECTTTCCEEEEEECSS-----------SSEEEEEECTTS---CEEEEECTTSSSCCEEEEE
T ss_pred CCCCEEEEEC--CCCEEEEEeCCCCcEEEEeeCCC-----------CCcceEEECCCC---cEEEEeCCCCCCCceEEEE
Confidence 4666655442 45689999999988765532111 123466676542 23332 2111112367777
Q ss_pred EcCCCCcc
Q 042334 192 TLGTHSWR 199 (266)
Q Consensus 192 ss~t~~W~ 199 (266)
+..++.-+
T Consensus 118 d~~~~~~~ 125 (333)
T 2dg1_A 118 TENGDNLQ 125 (333)
T ss_dssp CTTSCSCE
T ss_pred eCCCCEEE
Confidence 77766544
No 63
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=25.35 E-value=2.8e+02 Score=22.75 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred EeccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcce
Q 042334 108 FVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLE 187 (266)
Q Consensus 108 ~~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~ 187 (266)
.++. .+|.|.+.+. ....+.++++-.+....+.......+. ++.+|+..+. .+..+......
T Consensus 122 avd~-~~g~ly~~d~--~~~~I~~~~~dG~~~~~l~~~~l~~P~-----------~iavdp~~g~----ly~td~~~~~~ 183 (349)
T 3v64_C 122 AVDW-VHDKLYWTDS--GTSRIEVANLDGAHRKVLLWQSLEKPR-----------AIALHPMEGT----IYWTDWGNTPR 183 (349)
T ss_dssp EEET-TTTEEEEEET--TTTEEEEEETTSCSCEEEECTTCSCEE-----------EEEEETTTTE----EEEEECSSSCE
T ss_pred EEec-CCCeEEEEcC--CCCeEEEEcCCCCceEEEEeCCCCCcc-----------eEEEecCcCe----EEEeccCCCCE
Q ss_pred EEEEEcCCCCccccCCCccccccchhhhccccccceE-EcCeEeeeeccCCCCCccEEEEEEcCCCeeccc
Q 042334 188 IEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLS-AYGDMHWKNWEFGSDHEARIISFDFKNEQLNET 257 (266)
Q Consensus 188 ~~vyss~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~-~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i 257 (266)
++.++.....-+.+-.........- .+- .+|.|||.... ...|.++|+....-+.+
T Consensus 184 I~r~~~dG~~~~~~~~~~~~~PnGl---------a~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 184 IEASSMDGSGRRIIADTHLFWPNGL---------TIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAV 240 (349)
T ss_dssp EEEEETTSCSCEESCCSSCSCEEEE---------EEETTTTEEEEEETT-----TTEEEEEETTSCSCEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCcceE---------EEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEE
No 64
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=24.61 E-value=2.8e+02 Score=22.49 Aligned_cols=109 Identities=14% Similarity=0.020 Sum_probs=54.0
Q ss_pred eccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceE
Q 042334 109 VEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEI 188 (266)
Q Consensus 109 ~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~ 188 (266)
++. .+|.|.+.+. ....+.++++-.+....+..... ..-.++.+|+..+ .+++. +.+....+
T Consensus 86 vd~-~~g~ly~~d~--~~~~I~~~~~dG~~~~~l~~~~~-----------~~P~giavdp~~g--~ly~t--d~~~~~~I 147 (318)
T 3sov_A 86 CDW-LGEKLYWTDS--ETNRIEVSNLDGSLRKVLFWQEL-----------DQPRAIALDPSSG--FMYWT--DWGEVPKI 147 (318)
T ss_dssp EET-TTTEEEEEET--TTTEEEEEETTSCSCEEEECSSC-----------SSEEEEEEEGGGT--EEEEE--ECSSSCEE
T ss_pred EEc-CCCeEEEEEC--CCCEEEEEECCCCcEEEEEeCCC-----------CCccEEEEeCCCC--EEEEE--ecCCCCEE
Confidence 344 4666655553 45677788776544443322111 1224777776533 22222 11123456
Q ss_pred EEEEcCCCCcccc-CCCccccccchhhhccccccceEE---cCeEeeeeccCCCCCccEEEEEEcCCC
Q 042334 189 EVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSA---YGDMHWKNWEFGSDHEARIISFDFKNE 252 (266)
Q Consensus 189 ~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~il~fD~~~~ 252 (266)
+.++.....=+.+ .. ....++ ++.+ +|.+||.... ...|.++|+...
T Consensus 148 ~r~~~dG~~~~~~~~~--~l~~Pn----------glavd~~~~~lY~aD~~-----~~~I~~~d~dG~ 198 (318)
T 3sov_A 148 ERAGMDGSSRFIIINS--EIYWPN----------GLTLDYEEQKLYWADAK-----LNFIHKSNLDGT 198 (318)
T ss_dssp EEEETTSCSCEEEECS--SCSCEE----------EEEEETTTTEEEEEETT-----TTEEEEEETTSC
T ss_pred EEEEcCCCCeEEEEEC--CCCCcc----------EEEEeccCCEEEEEECC-----CCEEEEEcCCCC
Confidence 6666543211111 11 111122 5544 5899999444 468999998743
No 65
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=24.17 E-value=2.4e+02 Score=21.57 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=52.8
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|.+.+... ....++++||. ++...+..... .....++.+|+... +.+... ....+.+|+
T Consensus 113 ~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~~~----------~~~~~~i~~d~~g~---l~v~~~---~~~~i~~~~ 173 (300)
T 2qc5_A 113 LNGDIWFTQL--NGDRIGKLTAD-GTIYEYDLPNK----------GSYPAFITLGSDNA---LWFTEN---QNNSIGRIT 173 (300)
T ss_dssp STTCEEEEET--TTTEEEEECTT-SCEEEEECSST----------TCCEEEEEECTTSS---EEEEET---TTTEEEEEC
T ss_pred CCCCEEEEcc--CCCeEEEECCC-CCEEEccCCCC----------CCCceeEEECCCCC---EEEEec---CCCeEEEEC
Confidence 3555555442 24567777876 55443321110 01234566665422 222211 123566676
Q ss_pred cCCCCccccCCCccccccchhhhccccccceEE--cCeEeeeeccCCCCCccEEEEEEcCCCeecccCCC
Q 042334 193 LGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSA--YGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLP 260 (266)
Q Consensus 193 s~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~lP 260 (266)
. ++.......+...... .++.+ +|.+|+.... ...|..||. +.++..+.+|
T Consensus 174 ~-~g~~~~~~~~~~~~~~----------~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~ 226 (300)
T 2qc5_A 174 N-TGKLEEYPLPTNAAAP----------VGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDIP 226 (300)
T ss_dssp T-TCCEEEEECSSTTCCE----------EEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECS
T ss_pred C-CCcEEEeeCCCCCCCc----------ceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEECC
Confidence 6 5554433222111111 14444 4777766443 347888888 5555554444
No 66
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=23.92 E-value=43 Score=16.86 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=12.7
Q ss_pred CCCHHHHHHHhccCC
Q 042334 7 KVPADIVYEIFIRLP 21 (266)
Q Consensus 7 ~LP~Dll~~IL~rLP 21 (266)
-||.|++.-+|..-|
T Consensus 6 ilpsdimdfvlkntp 20 (31)
T 2agh_C 6 ILPSDIMDFVLKNTP 20 (31)
T ss_dssp SSCHHHHHHHHHHSC
T ss_pred cChHHHHHHHHhCCh
Confidence 489999999988777
No 67
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=23.86 E-value=1.1e+02 Score=21.71 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=24.8
Q ss_pred ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEE
Q 042334 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRL 178 (266)
Q Consensus 126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~ 178 (266)
...+++++|.+++|...-..-. ....+.+-.+..+..|+||.+
T Consensus 10 ~A~V~~~d~~~~~W~~~g~G~~----------~l~~V~i~~~~~~~~~Riv~~ 52 (130)
T 1qc6_A 10 RASVMVYDDTSKKWVPIKPGQQ----------GFSRINIYHNTASSTFRVVGV 52 (130)
T ss_dssp EEEEEEEETTTTEEEECC---------------CEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEECCCCCceeECCCCce----------eeeEEEEEecCCCcEEEEEEE
Confidence 5678999999998764321110 011233444555667888876
No 68
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=22.58 E-value=2.5e+02 Score=21.20 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=54.7
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT 192 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys 192 (266)
.+|-+.+.. ....++++|+.++....++.... ....++.+|+.. ++++.... .-.+.+|+
T Consensus 76 ~~g~l~v~~---~~~~i~~~d~~~~~~~~~~~~~~-----------~~p~~i~~~~~g---~l~v~~~~---~~~i~~~~ 135 (270)
T 1rwi_B 76 GAGTVYVTD---FNNRVVTLAAGSNNQTVLPFDGL-----------NYPEGLAVDTQG---AVYVADRG---NNRVVKLA 135 (270)
T ss_dssp TTCCEEEEE---TTTEEEEECTTCSCCEECCCCSC-----------SSEEEEEECTTC---CEEEEEGG---GTEEEEEC
T ss_pred CCCCEEEEc---CCCEEEEEeCCCceEeeeecCCc-----------CCCcceEECCCC---CEEEEECC---CCEEEEEE
Confidence 466666665 25678999998876655543221 123467777632 23333211 23566665
Q ss_pred cCCCCccccCCCccccccchhhhccccccceEE--cCeEeeeeccCCCCCccEEEEEEcCCCee
Q 042334 193 LGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSA--YGDMHWKNWEFGSDHEARIISFDFKNEQL 254 (266)
Q Consensus 193 s~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~il~fD~~~~~~ 254 (266)
.++......... ..... .++.+ +|.+|+.... ...|..||..+...
T Consensus 136 ~~~~~~~~~~~~-~~~~p----------~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 136 AGSKTQTVLPFT-GLNDP----------DGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQ 183 (270)
T ss_dssp TTCCSCEECCCC-SCCSC----------CCEEECTTCCEEEEEGG-----GTEEEEECTTTCCE
T ss_pred CCCceeEeeccc-cCCCc----------eeEEEeCCCCEEEEECC-----CCEEEEEecCCCce
Confidence 554433222111 11111 13433 4777776443 34788888876554
No 69
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=20.85 E-value=3.1e+02 Score=21.60 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=15.2
Q ss_pred EEEEEEcCCCeecccCCCC
Q 042334 243 RIISFDFKNEQLNETPLPD 261 (266)
Q Consensus 243 ~il~fD~~~~~~~~i~lP~ 261 (266)
.|..||.+.+....+.+|.
T Consensus 259 gv~~~~~~g~~~~~~~~~~ 277 (305)
T 3dr2_A 259 GVCVFDSDGQLLGHIPTPG 277 (305)
T ss_dssp EEEEECTTSCEEEEEECSS
T ss_pred cEEEECCCCCEEEEEECCC
Confidence 5999999888777777765
No 70
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=20.78 E-value=3.9e+02 Score=22.72 Aligned_cols=107 Identities=11% Similarity=0.181 Sum_probs=56.2
Q ss_pred CeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEE-eecCCCcceEEEEE
Q 042334 114 YGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRL-GREPRNNLEIEVYT 192 (266)
Q Consensus 114 ~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~-~~~~~~~~~~~vys 192 (266)
+|.|.+.+. ...+.++++.+++...+-... ..-.++.+|+..+ .|++. +........+.+++
T Consensus 149 ~g~Lyv~d~---~~~I~~id~~~~~v~~~~~~~------------~~P~~ia~d~~G~--~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 149 HNHLYLVGE---QHPTRLIDFEKEYVSTVYSGL------------SKVRTICWTHEAD--SMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp EEEEEEEEB---TEEEEEEETTTTEEEEEECCC------------SCEEEEEECTTSS--EEEEEECCSCTTSEEEEEEE
T ss_pred CCeEEEEeC---CCcEEEEECCCCEEEEEecCC------------CCcceEEEeCCCC--EEEEEeCCCCcccceEEEEe
Confidence 466666663 277888899887665553311 1234677776533 33333 22211122344444
Q ss_pred cCCCCcccc-CCCccccccchhhhccccccceEE---cCeEeeeeccCCCCCccEEEEEEcCCCee
Q 042334 193 LGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSA---YGDMHWKNWEFGSDHEARIISFDFKNEQL 254 (266)
Q Consensus 193 s~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~il~fD~~~~~~ 254 (266)
. .+.|... ..+ ..... .++.+ +|.+|+.... ...|..||..+.+.
T Consensus 212 ~-~g~~~~~~~l~-~~~~p----------~giavdp~~g~lyv~d~~-----~~~V~~~~~~~~~~ 260 (430)
T 3tc9_A 212 R-ESGFKVITELT-KGQNC----------NGAETHPINGELYFNSWN-----AGQVFRYDFTTQET 260 (430)
T ss_dssp G-GGTSCSEEEEE-ECSSC----------CCEEECTTTCCEEEEETT-----TTEEEEEETTTTEE
T ss_pred C-CCceeeeeeec-cCCCc----------eEEEEeCCCCEEEEEECC-----CCEEEEEECCCCcE
Confidence 3 3445422 111 01111 24545 6889988544 45899999987665
No 71
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=20.71 E-value=3.3e+02 Score=21.77 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=55.6
Q ss_pred cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee---cCCCcceEE
Q 042334 113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR---EPRNNLEIE 189 (266)
Q Consensus 113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~---~~~~~~~~~ 189 (266)
.+|.|.+.+. ...++.++++.|++....-..+.. .....++.+.+ ...++.-.. .+.....+.
T Consensus 206 ~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~---------~~~~~~~~~~p---g~~~~~~g~~~v~~~~~~~v~ 271 (329)
T 3fvz_A 206 HLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASF---------GRNVFAISYIP---GFLFAVNGKPYFGDQEPVQGF 271 (329)
T ss_dssp TTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTT---------TTCEEEEEEET---TEEEEEECCCCTTCSCCCCEE
T ss_pred CCCEEEEEEC--CCCEEEEEECCCCcEEEEEecccc---------CCCcceeeecC---CEEEEeCCCEEeccCCCcEEE
Confidence 3477777774 566788899987765433211110 01223455555 222222111 122345777
Q ss_pred EEEcCCCCcccc-C-CCccccccchhhhccccccceE--EcCeEeeeeccCCCCCccEEEEEEcCC
Q 042334 190 VYTLGTHSWRHA-S-PSSIRLSNNKLQLQCLSEFGLS--AYGDMHWKNWEFGSDHEARIISFDFKN 251 (266)
Q Consensus 190 vyss~t~~W~~~-~-~p~~~~~~~~~~~~~~~~~~v~--~~G~~yw~~~~~~~~~~~~il~fD~~~ 251 (266)
+++..++..... . .+....... ++. -+|.+|..... ...|..||+..
T Consensus 272 ~~~~~~g~~~~~~~~~~~~~~~p~----------~ia~~~dG~lyvad~~-----~~~I~~~~~~~ 322 (329)
T 3fvz_A 272 VMNFSSGEIIDVFKPVRKHFDMPH----------DIVASEDGTVYIGDAH-----TNTVWKFTLTE 322 (329)
T ss_dssp EEETTTCCEEEEECCSSSCCSSEE----------EEEECTTSEEEEEESS-----SCCEEEEEEEE
T ss_pred EEEcCCCeEEEEEcCCCCccCCee----------EEEECCCCCEEEEECC-----CCEEEEEeCCc
Confidence 888777654332 1 111111111 343 36878877444 35788888754
Done!