BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042336
(944 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 42/205 (20%)
Query: 203 ISMVGMGGIGKTTLAQFVYNDNDVINN-FEKRI-WVSVSDPFDEYRVAKAIIEALEGSAP 260
+++ GM G GK+ LA D+ ++ F + WVSV + ++ L+
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 204
Query: 261 NLGELNSLLQHICLSITGKK-------------FLLVLDDVWTEDYSKWEPFHNCLMNCL 307
L + S Q + L+I K LL+LDDVW D + F + C
Sbjct: 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLKAFDS---QC- 258
Query: 308 HGSKILVTTRKETVARMMESIDILIIKELS-----ELECWSLFKRFAFFGRSPFECKQLE 362
+IL+TTR ++V + ++ E S LE SLF + L
Sbjct: 259 ---QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM--------KKADLP 307
Query: 363 EIGRKIVGKCKGLPLAAKTIGSLLR 387
E I+ +CKG PL IG+LLR
Sbjct: 308 EQAHSIIKECKGSPLVVSLIGALLR 332
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 42/205 (20%)
Query: 203 ISMVGMGGIGKTTLAQFVYNDNDVINN-FEKRI-WVSVSDPFDEYRVAKAIIEALEGSAP 260
+++ GM G GK+ LA D+ ++ F + WVSV + ++ L+
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 210
Query: 261 NLGELNSLLQHICLSITGKK-------------FLLVLDDVWTEDYSKWEPFHNCLMNCL 307
L + S Q + L+I K LL+LDDVW D + F + C
Sbjct: 211 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLKAFDS---QC- 264
Query: 308 HGSKILVTTRKETVARMMESIDILIIKELS-----ELECWSLFKRFAFFGRSPFECKQLE 362
+IL+TTR ++V + ++ E S LE SLF + L
Sbjct: 265 ---QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM--------KKADLP 313
Query: 363 EIGRKIVGKCKGLPLAAKTIGSLLR 387
E I+ +CKG PL IG+LLR
Sbjct: 314 EQAHSIIKECKGSPLVVSLIGALLR 338
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 42/205 (20%)
Query: 203 ISMVGMGGIGKTTLAQFVYNDNDVINN-FEKRI-WVSVSDPFDEYRVAKAIIEALEGSAP 260
+++ GM G GK+ LA D+ ++ F + WVS+ + ++ L+
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK-----QDKSGLLMKLQNLCM 204
Query: 261 NLGELNSLLQHICLSITGKK-------------FLLVLDDVWTEDYSKWEPFHNCLMNCL 307
L + S Q + L+I K LL+LDDVW D + F N C
Sbjct: 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAFDN---QC- 258
Query: 308 HGSKILVTTRKETVARMMESIDILIIKELS-----ELECWSLFKRFAFFGRSPFECKQLE 362
+IL+TTR ++V + ++ E LE SLF + + L
Sbjct: 259 ---QILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--------KKEDLP 307
Query: 363 EIGRKIVGKCKGLPLAAKTIGSLLR 387
I+ +CKG PL IG+LLR
Sbjct: 308 AEAHSIIKECKGSPLVVSLIGALLR 332
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 782 NLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMP-PLGKL-PSLELLEVFALQS 839
LE+L + + LP+ I SLN+L++L + C + +P PL S E + LQS
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 840 VKR--VGDEFLGIEIVAFPKLKHLIFVDLXXXXXXXXXXXXITIMPQLNSLEIRDCHKLK 897
++ G L I LK L + I +P+L L++R C L+
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRN----SPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 898 SLPHQILGNTTLQMLKIYNC 917
+ P G L+ L + +C
Sbjct: 244 NYPPIFGGRAPLKRLILKDC 263
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 68/193 (35%), Gaps = 53/193 (27%)
Query: 545 SFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNS----------- 593
S P+ F + R + + I+ + L QF L L + RN
Sbjct: 90 SVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASL 149
Query: 594 ---KENSIYEIPK---------------EIQKLIHLRYFKLHWLEIKELPDTCCELFNLQ 635
+E SI P+ E Q L++L+ +L W I+ LP + L NL+
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 636 TIEI-----------------------EGCYNLNRLPQGVGKLVNLRHLIF-DVNFVEYM 671
+++I GC L P G L+ LI D + + +
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 672 PKGIERLTCLRTL 684
P I RLT L L
Sbjct: 270 PLDIHRLTQLEKL 282
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 782 NLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVK 841
NL+SL + +LP+ I +L LK L++ + P + LP LE L++ +++
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 842 RVGDEFLGIEIVAFPKLKHLIFVDLXXXXXXXXXXXXITIMPQLNSLEIRDCHKLKSLPH 901
F G LK LI D +T QL L++R C L LP
Sbjct: 244 NYPPIFGGRA-----PLKRLILKDCSNLLTLPLDIHRLT---QLEKLDLRGCVNLSRLPS 295
Query: 902 QI 903
I
Sbjct: 296 LI 297
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 545 SFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKE 604
S P + N + L+SL I N P+ + + + LR RN I+
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP--PIFGGRAP 254
Query: 605 IQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKL 655
+++LI L+ + LP L L+ +++ GC NL+RLP + +L
Sbjct: 255 LKRLI-LKDCS----NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 511 ECFAKEIDGVEGSLWINTSEEELRHSMLVFGNEASFPVFMFNA-KKLRSLLIHNIPIEVS 569
+C +K++ + ++ +T + +L+ + L +S P F+ KLR L +++ ++
Sbjct: 22 DCSSKKLTAIPSNIPADTKKLDLQSNKL-----SSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 570 SSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEI-QKLIHLRYFKLHWLEIKELPDTC 628
+ + + L N L L +T +N + +P + +L++L +L ++K LP
Sbjct: 77 PAGIFKELKN----LETLWVT----DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128
Query: 629 CELFNLQTIEIEGCYNLNRLPQGV-GKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTL 684
+ T G L LP+GV KL +L+ L N ++ +P+G ++LT L+TL
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 369 VGKCKGLPLAAKTIGSLLRFK--RTTEEWQNILDSEMW-QLEEFEKDLLAPLLLSYTDLP 425
V K KG+P A +G RFK E W+++LD+ + + DLL+ LSYT+LP
Sbjct: 21 VHKWKGIPYAKPPVGQW-RFKAPEPPEVWEDVLDATAYGPICPQPSDLLS---LSYTELP 76
Query: 426 SRIKRCFLYCAVF 438
+ + C LY VF
Sbjct: 77 RQSEDC-LYVNVF 88
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 369 VGKCKGLPLAAKTIGSLLRFK--RTTEEWQNILDSEMW-QLEEFEKDLLAPLLLSYTDLP 425
V K KG+P A +G RFK E W+++LD+ + + DLL+ LSYT+LP
Sbjct: 21 VHKWKGIPYAKPPVGQW-RFKAPEPPEVWEDVLDATAYGPVCPQPSDLLS---LSYTELP 76
Query: 426 SRIKRCFLYCAVF 438
+ + C LY VF
Sbjct: 77 RQSEDC-LYVNVF 88
>pdb|1XIP|A Chain A, Crystal Structure Of The N-Terminal Domain Of Nup159
Length = 388
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 22/104 (21%)
Query: 248 AKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEP-FHNCLMNC 306
+K++ A GS +GEL L HI T F KWE + + C
Sbjct: 48 SKSLFVAASGSKAVVGELQLLRDHITSDSTPLTF-------------KWEKEIPDVIFVC 94
Query: 307 LHGSKILVTTRKETVARMMESIDILIIKELSELECWSLFKRFAF 350
HG ++LV+TR + S+D ++ELSE + F++ F
Sbjct: 95 FHGDQVLVSTR-----NALYSLD---LEELSEFRTVTSFEKPVF 130
>pdb|3RRM|C Chain C, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
Length = 388
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 22/104 (21%)
Query: 248 AKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEP-FHNCLMNC 306
+K++ A GS +GEL L HI T F KWE + + C
Sbjct: 48 SKSLFVAASGSKAVVGELQLLRDHITSDSTPLTF-------------KWEKEIPDVIFVC 94
Query: 307 LHGSKILVTTRKETVARMMESIDILIIKELSELECWSLFKRFAF 350
HG ++LV+TR + S+D ++ELSE + F++ F
Sbjct: 95 FHGDQVLVSTR-----NALYSLD---LEELSEFRTVTSFEKPVF 130
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 42/205 (20%)
Query: 203 ISMVGMGGIGKTTLAQFVYNDNDVINN-FEKRI-WVSVSDPFDEYRVAKAIIEALEGSAP 260
+++ GM G GK+ LA D+ ++ F + WVS+ + ++ L+
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK-----QDKSGLLMKLQNLCM 211
Query: 261 NLGELNSLLQHICLSITGKK-------------FLLVLDDVWTEDYSKWEPFHNCLMNCL 307
L + S Q + L+I K LL+LDDVW D + F N C
Sbjct: 212 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAFDN---QC- 265
Query: 308 HGSKILVTTRKETVARMMESIDILIIKELS-----ELECWSLFKRFAFFGRSPFECKQLE 362
+IL+TT ++V + ++ E LE SLF + + L
Sbjct: 266 ---QILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--------KKEDLP 314
Query: 363 EIGRKIVGKCKGLPLAAKTIGSLLR 387
I+ +CKG PL IG+LLR
Sbjct: 315 AEAHSIIKECKGSPLVVSLIGALLR 339
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 594 KENSIYEIPKEI-QKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGV 652
+ N + +P + KL L L +I+ LPD + TI L LP GV
Sbjct: 36 ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV 95
Query: 653 -GKLVNLRHLIFDVNFVEYMPKGI-ERLTCLR 682
KL L+ L D N ++ +P GI +RLT L+
Sbjct: 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 595 ENSIYEI-PKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGV- 652
+N I ++ P LI+L+ L ++ LP + T+ G L LP V
Sbjct: 49 DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Query: 653 GKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLS 685
+LV+L+ L N + +P+GIERLT L L+
Sbjct: 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLA 141
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 642 CYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKG-IERLTCL 681
C L LP+G+ +L +L HL D N ++ +P G +RL+ L
Sbjct: 121 CNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 25/161 (15%)
Query: 507 LTKNECFAKEIDGVEGSLWINTSEEELRHSMLVFGNE-ASFPVFMFNA-KKLRSLLIHNI 564
L+KN E+ G +NT E +F N + P F KLR L + N
Sbjct: 66 LSKNLVRKIEVGAFNGLPSLNTLE--------LFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 565 PIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKEL 624
PIE S FN+ LR L + + I E + L++LRY L +K++
Sbjct: 118 PIESIPS----YAFNRVPSLRRLDLGELKRLEYISE--AAFEGLVNLRYLNLGMCNLKDI 171
Query: 625 PDTCCELFNLQTIEIEGCYNLNRL----PQGVGKLVNLRHL 661
P+ L L+ +E+ G NRL P L +LR L
Sbjct: 172 PNL-TALVRLEELELSG----NRLDLIRPGSFQGLTSLRKL 207
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 25/161 (15%)
Query: 507 LTKNECFAKEIDGVEGSLWINTSEEELRHSMLVFGNE-ASFPVFMFNA-KKLRSLLIHNI 564
L+KN E+ G +NT E +F N + P F KLR L + N
Sbjct: 66 LSKNLVRKIEVGAFNGLPSLNTLE--------LFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 565 PIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKEL 624
PIE S FN+ LR L + + I E + L++LRY L +K++
Sbjct: 118 PIESIPS----YAFNRVPSLRRLDLGELKRLEYISE--AAFEGLVNLRYLNLGMCNLKDI 171
Query: 625 PDTCCELFNLQTIEIEGCYNLNRL----PQGVGKLVNLRHL 661
P+ L L+ +E+ G NRL P L +LR L
Sbjct: 172 PNL-TALVRLEELELSG----NRLDLIRPGSFQGLTSLRKL 207
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 589 ITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRL 648
I NS S+ + IQ L ++RY L ++ ++ EL NL + + G L L
Sbjct: 47 IANNSDIKSV----QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTG-NQLQSL 100
Query: 649 PQGV-GKLVNLRHLIFDVNFVEYMPKGI-ERLTCLRTLS 685
P GV KL NL+ L+ N ++ +P G+ ++LT L L+
Sbjct: 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 589 ITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRL 648
I NS S+ + IQ L ++RY L ++ ++ EL NL + + G L L
Sbjct: 47 IANNSDIKSV----QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTG-NQLQSL 100
Query: 649 PQGV-GKLVNLRHLIFDVNFVEYMPKGI-ERLTCLRTL 684
P GV KL NL+ L+ N ++ +P G+ ++LT L L
Sbjct: 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 24 EVRLVDGVDQEVEKLTSNFRAIQAVIVDAEQ--RQIKEESVRLWLDQLKHTSYDMEDVLD 81
E +L GV + +E L + A ++ + R+ + +LW D+++ SY +EDV+D
Sbjct: 17 EFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76
Query: 82 EWNTARLKLQIEGV 95
+ +Q++G+
Sbjct: 77 -----KFLVQVDGI 85
>pdb|1TLJ|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
Sso0622 From Sulfolobus Solfataricus
pdb|1TLJ|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
Sso0622 From Sulfolobus Solfataricus
Length = 213
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 48 VIVDAEQRQIKEESVRLWLDQLKHTSYDMEDVLDEWNTARLKLQIEGVDQNALVPQKKKK 107
IVDAE ++ S ++ + L+ T D+EDVL + RL L ++G
Sbjct: 55 TIVDAEMPWDRKNSTIIFKNHLRITEQDLEDVLSKNQVRRLWLIVQG------------P 102
Query: 108 VCSFFPATACFGFKQVFLRRDIALK---IKAINDKLNDIVKQKDIFNFHVIR--GTEKPE 162
+ + G+ + + R+ K I A N K + + I H++R TE+ +
Sbjct: 103 IIHIYAKNIETGWDILKIAREAGFKHSGILATNQKGVLVELRTGIRMVHLLRESNTERVD 162
Query: 163 RIQSTALINV-SEVRGRDEEK 182
+ + L+NV +EV R ++K
Sbjct: 163 KDKIKTLVNVCNEVLARGKQK 183
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 566 IEVSSSPVLQVL-FNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKE 623
IE+S + VL+V+ + F+ L L R K N++ I P+ Q L +L+Y + IK
Sbjct: 59 IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118
Query: 624 LPDT 627
LPD
Sbjct: 119 LPDV 122
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 566 IEVSSSPVLQVL-FNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKE 623
IE+S + VL+V+ + F+ L L R K N++ I P+ Q L +L+Y + IK
Sbjct: 59 IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118
Query: 624 LPD 626
LPD
Sbjct: 119 LPD 121
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 203 ISMVGMGGIGKTTLAQFVYND--NDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP 260
I + G+ G GKT + +FV + + F K ++++ YRV ++E+L+ P
Sbjct: 48 IFIYGLTGTGKTAVVKFVLSKLHKKFLGKF-KHVYINTRQIDTPYRVLADLLESLDVKVP 106
Query: 261 NLG-ELNSLLQHICLSIT--GKKFLLVLDDV 288
G + L + + ++ G + ++VLD++
Sbjct: 107 FTGLSIAELYRRLVKAVRDYGSQVVIVLDEI 137
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 596 NSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKL 655
NS+ E+P EI+ L +LR L + LP F L+ + LP G L
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNL 315
Query: 656 VNLRHLIFDVNFVE 669
NL+ L + N +E
Sbjct: 316 CNLQFLGVEGNPLE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,455,203
Number of Sequences: 62578
Number of extensions: 1065802
Number of successful extensions: 2665
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2637
Number of HSP's gapped (non-prelim): 42
length of query: 944
length of database: 14,973,337
effective HSP length: 108
effective length of query: 836
effective length of database: 8,214,913
effective search space: 6867667268
effective search space used: 6867667268
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)