Query 042336
Match_columns 944
No_of_seqs 495 out of 4485
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.1E-91 2.4E-96 823.7 44.2 819 2-900 1-846 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.8E-62 2.1E-66 605.3 48.4 683 170-923 181-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.5E-44 1.6E-48 382.3 15.0 279 178-463 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 4.4E-23 9.6E-28 259.3 16.9 306 581-919 139-464 (968)
5 PLN00113 leucine-rich repeat r 99.9 2E-22 4.3E-27 253.5 15.7 361 531-920 118-488 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.1E-24 4.6E-29 228.6 -4.9 346 530-923 31-378 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 5.8E-22 1.3E-26 210.3 -5.8 322 530-900 54-379 (1255)
8 KOG4194 Membrane glycoprotein 99.8 9.3E-21 2E-25 200.3 3.0 341 530-919 77-428 (873)
9 KOG4194 Membrane glycoprotein 99.8 2.1E-20 4.6E-25 197.7 5.5 341 531-916 102-448 (873)
10 KOG0472 Leucine-rich repeat pr 99.7 4.1E-21 8.8E-26 194.5 -10.6 259 536-838 50-308 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 1.3E-20 2.9E-25 190.8 -7.6 356 536-919 73-540 (565)
12 PLN03210 Resistant to P. syrin 99.7 3.2E-17 7E-22 206.0 18.4 300 554-900 589-910 (1153)
13 KOG0618 Serine/threonine phosp 99.6 7E-18 1.5E-22 188.7 -5.6 280 542-837 9-320 (1081)
14 PRK04841 transcriptional regul 99.5 2.1E-12 4.5E-17 162.2 26.1 291 173-508 14-332 (903)
15 KOG0618 Serine/threonine phosp 99.5 1.1E-15 2.4E-20 171.4 -4.0 349 533-918 47-487 (1081)
16 PRK15387 E3 ubiquitin-protein 99.4 1.7E-12 3.6E-17 151.3 12.9 256 583-919 202-457 (788)
17 KOG4658 Apoptotic ATPase [Sign 99.3 3.9E-13 8.4E-18 160.2 4.2 254 550-843 519-786 (889)
18 PRK00411 cdc6 cell division co 99.3 5.4E-10 1.2E-14 125.6 27.6 303 171-488 28-359 (394)
19 KOG0617 Ras suppressor protein 99.3 5.8E-14 1.3E-18 126.3 -4.5 128 549-685 28-156 (264)
20 PRK15387 E3 ubiquitin-protein 99.3 9.3E-12 2E-16 145.2 11.2 256 536-899 206-461 (788)
21 PRK15370 E3 ubiquitin-protein 99.3 3.8E-12 8.2E-17 149.5 7.9 54 781-838 325-378 (754)
22 KOG0617 Ras suppressor protein 99.3 8.7E-14 1.9E-18 125.2 -4.5 52 774-825 143-194 (264)
23 PRK15370 E3 ubiquitin-protein 99.3 1.3E-11 2.8E-16 145.1 10.6 218 534-838 181-399 (754)
24 TIGR03015 pepcterm_ATPase puta 99.2 4.6E-10 1E-14 119.0 20.0 182 200-386 43-242 (269)
25 TIGR02928 orc1/cdc6 family rep 99.2 8.2E-09 1.8E-13 114.8 27.9 301 172-488 14-351 (365)
26 COG2909 MalT ATP-dependent tra 99.1 1.2E-08 2.5E-13 115.7 24.8 295 174-510 20-340 (894)
27 PRK00080 ruvB Holliday junctio 99.1 6.3E-10 1.4E-14 120.8 13.9 279 173-489 25-312 (328)
28 TIGR00635 ruvB Holliday juncti 99.1 1.5E-09 3.3E-14 117.2 16.1 276 173-488 4-290 (305)
29 PF01637 Arch_ATPase: Archaeal 99.1 3.4E-10 7.3E-15 117.6 10.6 195 175-381 1-233 (234)
30 cd00116 LRR_RI Leucine-rich re 99.0 5.8E-11 1.3E-15 129.8 -0.9 37 882-918 277-318 (319)
31 cd00116 LRR_RI Leucine-rich re 99.0 2E-10 4.3E-15 125.5 2.1 244 548-838 17-289 (319)
32 COG3899 Predicted ATPase [Gene 99.0 1.6E-08 3.4E-13 121.8 18.3 308 174-505 1-383 (849)
33 PF05729 NACHT: NACHT domain 98.9 6.4E-09 1.4E-13 101.4 11.2 143 201-348 1-162 (166)
34 PTZ00112 origin recognition co 98.9 1.3E-07 2.8E-12 108.1 22.1 213 172-386 754-986 (1164)
35 KOG4237 Extracellular matrix p 98.9 8.5E-11 1.8E-15 120.3 -3.5 124 554-685 67-194 (498)
36 KOG4237 Extracellular matrix p 98.8 7.9E-11 1.7E-15 120.5 -5.9 279 583-895 68-358 (498)
37 KOG0532 Leucine-rich repeat (L 98.7 9E-10 2E-14 118.1 -2.9 106 574-685 90-195 (722)
38 PRK06893 DNA replication initi 98.7 9.8E-08 2.1E-12 97.5 12.0 152 201-383 40-204 (229)
39 TIGR03420 DnaA_homol_Hda DnaA 98.6 4.1E-07 8.8E-12 93.7 13.8 169 178-383 22-202 (226)
40 PRK13342 recombination factor 98.6 5.7E-07 1.2E-11 100.8 15.9 177 173-383 12-197 (413)
41 PF14580 LRR_9: Leucine-rich r 98.6 2.5E-08 5.3E-13 95.4 3.3 128 551-689 16-150 (175)
42 PF13401 AAA_22: AAA domain; P 98.6 1.1E-07 2.5E-12 88.3 7.3 118 199-318 3-125 (131)
43 COG2256 MGS1 ATPase related to 98.5 5.4E-07 1.2E-11 94.0 11.4 171 173-378 30-208 (436)
44 PRK07003 DNA polymerase III su 98.5 9.4E-06 2E-10 93.0 21.8 185 173-384 16-223 (830)
45 KOG0532 Leucine-rich repeat (L 98.5 6.1E-09 1.3E-13 111.9 -3.7 128 546-685 113-240 (722)
46 PRK12402 replication factor C 98.5 2.2E-06 4.8E-11 94.2 16.2 199 173-382 15-226 (337)
47 PRK14961 DNA polymerase III su 98.5 3.5E-06 7.6E-11 92.6 17.4 182 173-381 16-219 (363)
48 COG4886 Leucine-rich repeat (L 98.5 7.6E-08 1.7E-12 108.3 4.2 103 578-685 112-215 (394)
49 KOG3207 Beta-tubulin folding c 98.5 4.5E-08 9.7E-13 102.3 1.7 150 531-684 121-276 (505)
50 PF13191 AAA_16: AAA ATPase do 98.5 2.9E-07 6.4E-12 91.4 7.6 47 174-223 1-47 (185)
51 PRK05564 DNA polymerase III su 98.5 4.4E-06 9.5E-11 90.1 17.1 180 173-382 4-190 (313)
52 PTZ00202 tuzin; Provisional 98.5 6.4E-06 1.4E-10 87.7 17.0 168 167-348 256-433 (550)
53 PRK04195 replication factor C 98.5 2.2E-05 4.8E-10 89.9 23.2 247 173-462 14-272 (482)
54 PRK14949 DNA polymerase III su 98.4 4.4E-06 9.5E-11 97.6 16.8 183 173-382 16-220 (944)
55 TIGR02903 spore_lon_C ATP-depe 98.4 4.3E-06 9.2E-11 97.7 16.9 171 173-350 154-367 (615)
56 PRK14960 DNA polymerase III su 98.4 4.7E-06 1E-10 94.4 16.4 183 173-382 15-219 (702)
57 KOG3207 Beta-tubulin folding c 98.4 4.6E-08 1E-12 102.1 0.5 218 601-896 113-339 (505)
58 PRK14963 DNA polymerase III su 98.4 8.5E-07 1.9E-11 100.4 9.9 197 173-379 14-214 (504)
59 PF13173 AAA_14: AAA domain 98.4 9.9E-07 2.1E-11 81.2 8.6 119 201-341 3-127 (128)
60 cd00009 AAA The AAA+ (ATPases 98.4 1.6E-06 3.5E-11 82.4 10.5 125 176-320 1-131 (151)
61 COG1474 CDC6 Cdc6-related prot 98.4 1.7E-05 3.8E-10 86.0 18.9 205 174-382 18-238 (366)
62 PRK00440 rfc replication facto 98.4 8.1E-06 1.7E-10 89.0 16.5 182 173-381 17-202 (319)
63 PF05496 RuvB_N: Holliday junc 98.4 1.8E-06 3.8E-11 84.3 9.6 177 173-382 24-221 (233)
64 PF14580 LRR_9: Leucine-rich r 98.4 2.8E-07 6E-12 88.3 4.1 122 530-663 18-147 (175)
65 PLN03025 replication factor C 98.4 7.3E-06 1.6E-10 88.6 15.4 183 173-380 13-198 (319)
66 PRK14957 DNA polymerase III su 98.4 9E-06 2E-10 92.2 16.5 184 173-383 16-222 (546)
67 PRK06645 DNA polymerase III su 98.4 1.2E-05 2.7E-10 90.6 17.3 194 173-379 21-226 (507)
68 PRK08727 hypothetical protein; 98.4 1.1E-05 2.4E-10 82.7 15.6 148 201-379 42-201 (233)
69 PRK12323 DNA polymerase III su 98.3 8.4E-06 1.8E-10 92.2 15.6 180 173-382 16-225 (700)
70 KOG1259 Nischarin, modulator o 98.3 1E-07 2.2E-12 94.4 -0.1 124 550-685 280-405 (490)
71 KOG1909 Ran GTPase-activating 98.3 1.5E-07 3.2E-12 95.9 0.7 97 547-643 23-131 (382)
72 cd01128 rho_factor Transcripti 98.3 1E-06 2.2E-11 90.1 6.0 88 200-288 16-112 (249)
73 PRK08903 DnaA regulatory inact 98.3 1.4E-05 3E-10 82.2 14.4 152 200-386 42-203 (227)
74 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.6E-12 93.9 -1.0 60 609-670 284-343 (490)
75 PRK07994 DNA polymerase III su 98.3 1.5E-05 3.2E-10 91.9 15.8 194 173-382 16-220 (647)
76 PRK13341 recombination factor 98.3 7.5E-06 1.6E-10 96.4 13.2 174 173-379 28-214 (725)
77 PRK14956 DNA polymerase III su 98.2 1E-05 2.2E-10 89.2 13.3 195 173-379 18-219 (484)
78 PRK08691 DNA polymerase III su 98.2 1.7E-05 3.7E-10 90.9 15.4 183 173-382 16-220 (709)
79 PRK14964 DNA polymerase III su 98.2 2.6E-05 5.7E-10 87.1 16.5 181 173-379 13-214 (491)
80 TIGR02397 dnaX_nterm DNA polym 98.2 3.7E-05 8E-10 85.2 17.9 183 173-382 14-218 (355)
81 KOG2028 ATPase related to the 98.2 1.8E-05 3.9E-10 81.0 13.6 158 198-377 160-331 (554)
82 PRK08084 DNA replication initi 98.2 2.9E-05 6.2E-10 79.7 15.4 151 201-382 46-209 (235)
83 PRK14951 DNA polymerase III su 98.2 2.4E-05 5.3E-10 90.0 16.2 197 173-382 16-225 (618)
84 PRK14962 DNA polymerase III su 98.2 2.8E-05 6.1E-10 87.4 16.4 187 173-386 14-223 (472)
85 PRK05896 DNA polymerase III su 98.2 2.7E-05 5.8E-10 88.5 16.0 194 173-382 16-221 (605)
86 PRK07940 DNA polymerase III su 98.2 3.7E-05 8.1E-10 84.3 16.2 181 173-382 5-213 (394)
87 KOG4341 F-box protein containi 98.2 1.9E-07 4.1E-12 97.2 -1.6 133 802-943 318-456 (483)
88 PF13855 LRR_8: Leucine rich r 98.2 2E-06 4.3E-11 67.3 4.4 58 582-643 1-60 (61)
89 TIGR00678 holB DNA polymerase 98.2 4.3E-05 9.3E-10 75.8 15.0 92 277-378 94-187 (188)
90 PRK14958 DNA polymerase III su 98.2 3.3E-05 7.1E-10 87.9 15.9 183 173-381 16-219 (509)
91 PRK09087 hypothetical protein; 98.2 1.8E-05 3.9E-10 80.3 12.4 140 201-381 45-194 (226)
92 COG3903 Predicted ATPase [Gene 98.2 7.1E-06 1.5E-10 86.5 9.2 290 199-507 13-313 (414)
93 PRK05642 DNA replication initi 98.2 4.7E-05 1E-09 78.0 15.2 153 201-384 46-210 (234)
94 PRK07471 DNA polymerase III su 98.2 6.4E-05 1.4E-09 81.8 17.0 195 173-382 19-238 (365)
95 PRK09112 DNA polymerase III su 98.2 3.6E-05 7.8E-10 83.2 14.9 197 172-383 22-241 (351)
96 PRK14955 DNA polymerase III su 98.1 2.8E-05 6E-10 86.6 14.1 199 173-381 16-227 (397)
97 PRK14969 DNA polymerase III su 98.1 4.8E-05 1E-09 87.3 15.8 181 173-379 16-217 (527)
98 PRK09376 rho transcription ter 98.1 4.9E-06 1.1E-10 88.4 6.8 88 200-288 169-265 (416)
99 KOG2227 Pre-initiation complex 98.1 7.6E-05 1.7E-09 79.6 15.4 200 171-375 148-361 (529)
100 PRK09111 DNA polymerase III su 98.1 7.3E-05 1.6E-09 86.4 16.5 197 173-382 24-233 (598)
101 PLN03150 hypothetical protein; 98.1 3.5E-06 7.7E-11 99.3 5.8 92 583-677 419-512 (623)
102 COG4886 Leucine-rich repeat (L 98.1 2.4E-06 5.2E-11 96.2 4.2 180 549-753 111-291 (394)
103 PF00308 Bac_DnaA: Bacterial d 98.1 0.0001 2.2E-09 74.5 15.5 184 173-381 9-207 (219)
104 PRK14952 DNA polymerase III su 98.0 0.00013 2.8E-09 83.8 17.3 198 173-386 13-224 (584)
105 PF13855 LRR_8: Leucine rich r 98.0 4.7E-06 1E-10 65.2 3.9 58 609-667 1-60 (61)
106 KOG2120 SCF ubiquitin ligase, 98.0 1.3E-07 2.7E-12 93.8 -6.1 59 781-839 286-350 (419)
107 PRK14087 dnaA chromosomal repl 98.0 0.0001 2.2E-09 82.9 16.1 166 200-383 141-320 (450)
108 TIGR01242 26Sp45 26S proteasom 98.0 3.5E-05 7.5E-10 85.1 12.2 179 172-376 121-328 (364)
109 PRK14970 DNA polymerase III su 98.0 0.00014 3E-09 80.7 16.9 181 173-379 17-206 (367)
110 PLN03150 hypothetical protein; 98.0 8.8E-06 1.9E-10 96.0 7.6 105 555-666 419-525 (623)
111 KOG1909 Ran GTPase-activating 98.0 3.2E-07 7E-12 93.5 -4.1 94 575-668 23-132 (382)
112 KOG0989 Replication factor C, 98.0 6.2E-05 1.3E-09 75.9 12.0 183 173-376 36-224 (346)
113 PRK07764 DNA polymerase III su 98.0 0.00013 2.8E-09 87.3 16.8 180 173-379 15-218 (824)
114 PRK14950 DNA polymerase III su 98.0 0.0002 4.2E-09 83.9 17.8 195 173-382 16-221 (585)
115 PRK14959 DNA polymerase III su 98.0 0.00014 2.9E-09 83.3 15.9 198 173-386 16-225 (624)
116 KOG2543 Origin recognition com 98.0 0.00018 4E-09 74.8 14.9 167 172-348 5-192 (438)
117 PF14516 AAA_35: AAA-like doma 98.0 0.0017 3.6E-08 70.4 23.3 202 171-389 9-246 (331)
118 PRK07133 DNA polymerase III su 97.9 0.00027 5.8E-09 82.2 17.4 188 173-379 18-216 (725)
119 PRK14953 DNA polymerase III su 97.9 0.00032 6.8E-09 79.5 17.8 183 173-382 16-220 (486)
120 KOG4341 F-box protein containi 97.9 4.7E-07 1E-11 94.3 -4.5 120 802-925 292-419 (483)
121 PRK08451 DNA polymerase III su 97.9 0.00035 7.7E-09 79.0 17.6 180 173-382 14-218 (535)
122 PRK14954 DNA polymerase III su 97.9 0.00029 6.4E-09 81.6 17.3 197 173-378 16-224 (620)
123 TIGR00767 rho transcription te 97.9 3.4E-05 7.3E-10 82.7 8.5 90 199-289 167-265 (415)
124 PRK11331 5-methylcytosine-spec 97.9 4.8E-05 1E-09 83.0 9.6 120 173-304 175-298 (459)
125 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.7E-10 57.3 3.1 38 610-648 2-39 (44)
126 TIGR00362 DnaA chromosomal rep 97.9 0.00056 1.2E-08 76.9 18.0 158 200-379 136-307 (405)
127 PRK06620 hypothetical protein; 97.9 0.00031 6.8E-09 70.6 14.3 132 201-379 45-186 (214)
128 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00018 3.9E-09 87.3 14.3 152 173-348 187-362 (852)
129 PRK06305 DNA polymerase III su 97.8 0.00038 8.2E-09 78.4 16.0 179 173-379 17-219 (451)
130 PRK14971 DNA polymerase III su 97.8 0.00043 9.3E-09 80.7 16.9 180 173-379 17-219 (614)
131 PF05621 TniB: Bacterial TniB 97.8 0.00051 1.1E-08 70.8 15.3 204 173-380 34-259 (302)
132 PRK14948 DNA polymerase III su 97.8 0.00056 1.2E-08 79.8 17.4 196 173-382 16-222 (620)
133 PHA02544 44 clamp loader, smal 97.8 0.00043 9.4E-09 75.2 15.7 148 173-347 21-171 (316)
134 COG2255 RuvB Holliday junction 97.8 0.00018 4E-09 71.8 11.0 175 173-380 26-221 (332)
135 PF05673 DUF815: Protein of un 97.8 0.00034 7.4E-09 69.6 13.0 125 169-320 23-152 (249)
136 KOG2982 Uncharacterized conser 97.8 2.3E-05 5.1E-10 78.1 4.2 202 579-835 68-287 (418)
137 CHL00181 cbbX CbbX; Provisiona 97.8 0.00096 2.1E-08 70.4 16.6 135 201-351 60-211 (287)
138 PRK14965 DNA polymerase III su 97.8 0.00051 1.1E-08 79.9 15.9 194 173-382 16-221 (576)
139 PRK12422 chromosomal replicati 97.7 0.0013 2.8E-08 73.8 18.4 154 200-375 141-306 (445)
140 PRK06647 DNA polymerase III su 97.7 0.00094 2E-08 77.0 17.3 195 173-381 16-219 (563)
141 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 6.9E-10 55.2 3.3 40 582-625 1-40 (44)
142 PRK14088 dnaA chromosomal repl 97.7 0.0011 2.3E-08 74.7 17.2 159 200-379 130-302 (440)
143 PRK03992 proteasome-activating 97.7 0.00026 5.6E-09 78.5 11.6 177 173-375 131-336 (389)
144 TIGR02639 ClpA ATP-dependent C 97.7 0.0004 8.7E-09 83.8 13.8 156 173-349 182-358 (731)
145 PRK00149 dnaA chromosomal repl 97.7 0.0011 2.3E-08 75.5 16.6 158 200-379 148-319 (450)
146 TIGR02881 spore_V_K stage V sp 97.6 0.00095 2.1E-08 70.0 14.4 161 174-350 7-192 (261)
147 TIGR02880 cbbX_cfxQ probable R 97.6 0.0007 1.5E-08 71.5 13.3 133 202-350 60-209 (284)
148 PRK07399 DNA polymerase III su 97.6 0.0015 3.3E-08 69.8 15.8 196 173-382 4-221 (314)
149 KOG0531 Protein phosphatase 1, 97.6 7.9E-06 1.7E-10 92.1 -1.8 101 578-685 91-192 (414)
150 COG0593 DnaA ATPase involved i 97.6 0.0033 7.1E-08 68.2 18.1 139 199-354 112-262 (408)
151 PRK05563 DNA polymerase III su 97.6 0.002 4.4E-08 74.6 17.8 192 173-380 16-218 (559)
152 PRK14086 dnaA chromosomal repl 97.6 0.0031 6.6E-08 72.1 18.7 155 201-377 315-483 (617)
153 KOG3665 ZYG-1-like serine/thre 97.6 6.6E-05 1.4E-09 88.3 5.1 109 551-668 145-262 (699)
154 PRK08116 hypothetical protein; 97.6 0.00031 6.6E-09 73.4 9.3 103 201-318 115-220 (268)
155 CHL00095 clpC Clp protease ATP 97.5 0.00058 1.3E-08 83.4 12.7 154 173-347 179-352 (821)
156 PRK05707 DNA polymerase III su 97.5 0.002 4.4E-08 69.2 15.3 97 278-382 105-203 (328)
157 COG3267 ExeA Type II secretory 97.5 0.0053 1.2E-07 61.0 16.5 181 199-384 50-247 (269)
158 KOG2120 SCF ubiquitin ligase, 97.5 4.9E-06 1.1E-10 82.8 -4.6 164 733-918 204-374 (419)
159 PF00004 AAA: ATPase family as 97.5 0.00037 8.1E-09 64.6 8.1 21 203-223 1-21 (132)
160 PRK15386 type III secretion pr 97.5 0.00036 7.7E-09 75.4 8.8 73 578-665 48-121 (426)
161 KOG3665 ZYG-1-like serine/thre 97.4 5.5E-05 1.2E-09 88.9 2.0 127 553-685 121-256 (699)
162 KOG4579 Leucine-rich repeat (L 97.4 3.1E-05 6.8E-10 68.3 -0.0 92 578-674 49-141 (177)
163 KOG4579 Leucine-rich repeat (L 97.4 9.2E-06 2E-10 71.5 -3.3 99 582-685 27-129 (177)
164 PRK10536 hypothetical protein; 97.4 0.0018 4E-08 65.4 12.1 135 173-319 55-213 (262)
165 TIGR03689 pup_AAA proteasome A 97.4 0.0032 6.9E-08 71.1 14.9 165 173-349 182-378 (512)
166 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0014 3E-08 80.4 12.8 153 173-349 173-349 (852)
167 smart00382 AAA ATPases associa 97.3 0.00098 2.1E-08 62.6 9.2 87 201-291 3-90 (148)
168 KOG1859 Leucine-rich repeat pr 97.3 5.2E-05 1.1E-09 84.6 0.4 85 576-668 181-266 (1096)
169 PRK08769 DNA polymerase III su 97.3 0.0031 6.7E-08 67.1 12.9 96 277-382 111-208 (319)
170 PTZ00361 26 proteosome regulat 97.3 0.0011 2.4E-08 73.6 9.5 158 173-350 183-368 (438)
171 PRK15386 type III secretion pr 97.2 0.00033 7.1E-09 75.7 5.2 39 583-626 73-112 (426)
172 PRK10865 protein disaggregatio 97.2 0.0034 7.4E-08 76.7 14.1 45 173-223 178-222 (857)
173 COG1373 Predicted ATPase (AAA+ 97.2 0.0055 1.2E-07 68.0 14.3 147 202-381 39-191 (398)
174 TIGR00602 rad24 checkpoint pro 97.2 0.002 4.2E-08 74.8 10.9 51 172-223 83-133 (637)
175 PRK11034 clpA ATP-dependent Cl 97.2 0.0034 7.4E-08 74.8 13.2 155 174-349 187-362 (758)
176 PRK06090 DNA polymerase III su 97.1 0.011 2.5E-07 62.8 15.4 176 181-382 11-201 (319)
177 PF13177 DNA_pol3_delta2: DNA 97.1 0.0043 9.4E-08 59.4 11.2 138 177-336 1-161 (162)
178 PRK12377 putative replication 97.1 0.00082 1.8E-08 68.8 6.5 101 201-318 102-205 (248)
179 PRK08058 DNA polymerase III su 97.1 0.0082 1.8E-07 65.0 14.6 163 174-348 6-181 (329)
180 PTZ00454 26S protease regulato 97.1 0.0046 1E-07 68.3 12.6 157 173-349 145-329 (398)
181 KOG0531 Protein phosphatase 1, 97.1 0.00013 2.8E-09 82.3 0.4 108 550-669 91-199 (414)
182 PRK10865 protein disaggregatio 97.1 0.004 8.6E-08 76.1 13.0 138 173-318 568-720 (857)
183 PRK08181 transposase; Validate 97.1 0.0014 3E-08 68.1 7.7 101 201-319 107-209 (269)
184 PRK06871 DNA polymerase III su 97.1 0.02 4.3E-07 61.1 16.5 177 181-379 10-200 (325)
185 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0051 1.1E-07 75.5 13.8 136 173-318 565-717 (852)
186 PRK08118 topology modulation p 97.1 0.00022 4.8E-09 68.7 1.5 34 202-235 3-37 (167)
187 PRK08939 primosomal protein Dn 97.0 0.0029 6.3E-08 67.3 9.7 121 177-317 135-259 (306)
188 PRK10787 DNA-binding ATP-depen 97.0 0.0074 1.6E-07 72.6 14.0 166 172-349 321-506 (784)
189 TIGR02639 ClpA ATP-dependent C 97.0 0.0058 1.3E-07 73.9 13.1 122 174-306 455-580 (731)
190 COG0466 Lon ATP-dependent Lon 97.0 0.0059 1.3E-07 69.3 11.9 166 172-349 322-508 (782)
191 PF01695 IstB_IS21: IstB-like 97.0 0.00073 1.6E-08 65.8 4.3 99 201-318 48-149 (178)
192 KOG0991 Replication factor C, 97.0 0.0086 1.9E-07 58.1 11.1 44 173-222 27-70 (333)
193 KOG1514 Origin recognition com 97.0 0.024 5.2E-07 64.2 16.3 202 174-382 397-621 (767)
194 CHL00176 ftsH cell division pr 97.0 0.0088 1.9E-07 70.0 13.7 177 173-374 183-386 (638)
195 PF04665 Pox_A32: Poxvirus A32 97.0 0.00098 2.1E-08 67.1 5.1 36 201-238 14-49 (241)
196 PF10443 RNA12: RNA12 protein; 97.0 0.039 8.4E-07 59.9 17.3 203 178-393 1-289 (431)
197 PRK06921 hypothetical protein; 96.9 0.0034 7.4E-08 65.4 9.2 99 200-318 117-224 (266)
198 TIGR02640 gas_vesic_GvpN gas v 96.9 0.021 4.6E-07 59.7 15.1 42 202-248 23-64 (262)
199 TIGR00763 lon ATP-dependent pr 96.9 0.025 5.4E-07 68.9 17.8 165 173-349 320-505 (775)
200 PRK07952 DNA replication prote 96.9 0.0089 1.9E-07 61.1 11.6 103 200-318 99-204 (244)
201 PRK07261 topology modulation p 96.9 0.0022 4.8E-08 62.1 6.7 34 202-235 2-36 (171)
202 COG0542 clpA ATP-binding subun 96.9 0.0028 6.1E-08 73.9 8.5 123 173-306 491-620 (786)
203 PF02562 PhoH: PhoH-like prote 96.8 0.0016 3.4E-08 64.1 5.3 131 177-319 4-156 (205)
204 PRK09183 transposase/IS protei 96.8 0.0046 1E-07 64.3 9.1 100 201-318 103-205 (259)
205 PRK06526 transposase; Provisio 96.8 0.0027 5.8E-08 65.6 7.3 100 201-319 99-201 (254)
206 COG1222 RPT1 ATP-dependent 26S 96.8 0.019 4.1E-07 59.9 13.0 188 174-387 152-372 (406)
207 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0032 7E-08 76.6 8.9 135 173-317 566-717 (852)
208 PRK13531 regulatory ATPase Rav 96.8 0.0061 1.3E-07 67.5 10.2 152 173-348 20-193 (498)
209 PRK07993 DNA polymerase III su 96.8 0.041 8.8E-07 59.4 16.2 179 181-381 10-203 (334)
210 COG2607 Predicted ATPase (AAA+ 96.7 0.017 3.6E-07 56.7 11.1 121 171-318 58-182 (287)
211 PRK04132 replication factor C 96.7 0.029 6.3E-07 67.2 15.6 155 208-382 574-731 (846)
212 TIGR01241 FtsH_fam ATP-depende 96.7 0.026 5.6E-07 65.2 14.9 178 173-375 55-259 (495)
213 PF00910 RNA_helicase: RNA hel 96.7 0.0023 4.9E-08 56.6 4.7 21 203-223 1-21 (107)
214 PF07693 KAP_NTPase: KAP famil 96.7 0.058 1.3E-06 58.8 16.8 42 179-223 2-43 (325)
215 CHL00095 clpC Clp protease ATP 96.6 0.0068 1.5E-07 74.2 9.9 138 173-318 509-661 (821)
216 PRK04296 thymidine kinase; Pro 96.6 0.0037 8E-08 61.8 6.2 113 201-320 3-117 (190)
217 PRK06964 DNA polymerase III su 96.6 0.036 7.8E-07 59.7 14.0 94 277-382 130-225 (342)
218 KOG0741 AAA+-type ATPase [Post 96.6 0.04 8.7E-07 60.2 13.9 150 197-372 535-704 (744)
219 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0019 4.2E-08 68.8 4.2 62 174-235 52-118 (361)
220 PRK05541 adenylylsulfate kinas 96.6 0.0065 1.4E-07 59.5 7.6 36 199-236 6-41 (176)
221 TIGR02237 recomb_radB DNA repa 96.5 0.0054 1.2E-07 62.0 7.0 48 199-249 11-58 (209)
222 COG5238 RNA1 Ran GTPase-activa 96.5 0.0016 3.4E-08 64.6 2.9 105 549-669 25-133 (388)
223 PRK12608 transcription termina 96.5 0.01 2.2E-07 63.7 9.1 101 181-288 119-229 (380)
224 PRK09361 radB DNA repair and r 96.5 0.0088 1.9E-07 61.3 8.2 46 199-247 22-67 (225)
225 COG2884 FtsE Predicted ATPase 96.5 0.017 3.8E-07 54.6 9.1 125 199-326 27-204 (223)
226 COG0470 HolB ATPase involved i 96.5 0.015 3.2E-07 63.5 10.5 142 174-335 2-167 (325)
227 PRK11034 clpA ATP-dependent Cl 96.5 0.024 5.2E-07 67.8 12.7 122 174-306 459-584 (758)
228 PHA00729 NTP-binding motif con 96.4 0.01 2.2E-07 59.2 7.7 25 199-223 16-40 (226)
229 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.015 3.2E-07 54.8 8.2 117 201-320 3-139 (159)
230 KOG2228 Origin recognition com 96.4 0.029 6.2E-07 58.0 10.7 172 173-349 24-219 (408)
231 PF07728 AAA_5: AAA domain (dy 96.4 0.0017 3.6E-08 60.8 1.9 89 203-304 2-90 (139)
232 COG1484 DnaC DNA replication p 96.3 0.0044 9.6E-08 64.0 4.8 81 200-297 105-185 (254)
233 PRK06835 DNA replication prote 96.3 0.014 2.9E-07 62.7 8.5 102 201-318 184-288 (329)
234 COG1223 Predicted ATPase (AAA+ 96.3 0.031 6.7E-07 55.4 10.0 157 173-350 121-298 (368)
235 cd01393 recA_like RecA is a b 96.3 0.02 4.3E-07 58.7 9.5 87 199-288 18-123 (226)
236 PF00158 Sigma54_activat: Sigm 96.3 0.0081 1.7E-07 57.8 6.0 130 175-318 1-143 (168)
237 TIGR02902 spore_lonB ATP-depen 96.3 0.023 5E-07 65.7 10.8 43 174-222 66-108 (531)
238 KOG2004 Mitochondrial ATP-depe 96.2 0.035 7.7E-07 62.9 11.5 105 172-288 410-514 (906)
239 PF13207 AAA_17: AAA domain; P 96.2 0.0031 6.8E-08 57.3 2.9 22 202-223 1-22 (121)
240 cd01394 radB RadB. The archaea 96.2 0.017 3.6E-07 58.9 8.4 43 199-243 18-60 (218)
241 PRK11889 flhF flagellar biosyn 96.2 0.045 9.7E-07 59.0 11.6 104 199-304 240-347 (436)
242 TIGR01243 CDC48 AAA family ATP 96.2 0.026 5.5E-07 68.6 11.4 179 174-377 179-382 (733)
243 COG2812 DnaX DNA polymerase II 96.2 0.017 3.6E-07 64.9 8.6 189 173-377 16-215 (515)
244 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.019 4E-07 59.4 8.5 51 199-249 18-72 (235)
245 PF00448 SRP54: SRP54-type pro 96.1 0.015 3.2E-07 57.6 7.4 87 200-288 1-92 (196)
246 PRK08699 DNA polymerase III su 96.1 0.04 8.7E-07 59.2 11.2 71 278-348 112-184 (325)
247 KOG0735 AAA+-type ATPase [Post 96.1 0.06 1.3E-06 61.1 12.5 155 199-375 430-608 (952)
248 cd03247 ABCC_cytochrome_bd The 96.1 0.033 7.2E-07 54.5 9.5 117 201-323 29-161 (178)
249 KOG1969 DNA replication checkp 96.1 0.016 3.5E-07 65.7 8.0 90 197-304 323-412 (877)
250 KOG1859 Leucine-rich repeat pr 96.1 0.00076 1.6E-08 75.7 -2.3 95 583-685 165-260 (1096)
251 cd01120 RecA-like_NTPases RecA 96.1 0.021 4.7E-07 54.9 8.1 40 202-243 1-40 (165)
252 PF14532 Sigma54_activ_2: Sigm 96.1 0.0043 9.2E-08 57.9 2.9 108 176-319 1-110 (138)
253 PF13671 AAA_33: AAA domain; P 96.0 0.014 3E-07 54.9 6.4 21 202-222 1-21 (143)
254 cd03214 ABC_Iron-Siderophores_ 96.0 0.049 1.1E-06 53.4 10.4 119 200-322 25-161 (180)
255 PF08423 Rad51: Rad51; InterP 96.0 0.018 3.9E-07 59.7 7.6 56 200-256 38-97 (256)
256 PRK13695 putative NTPase; Prov 96.0 0.0081 1.8E-07 58.6 4.6 21 203-223 3-23 (174)
257 cd03238 ABC_UvrA The excision 95.9 0.031 6.8E-07 54.2 8.3 122 200-333 21-161 (176)
258 cd00983 recA RecA is a bacter 95.9 0.013 2.8E-07 62.2 6.1 83 199-288 54-142 (325)
259 TIGR02012 tigrfam_recA protein 95.9 0.02 4.3E-07 60.8 7.3 83 199-288 54-142 (321)
260 PRK06696 uridine kinase; Valid 95.9 0.0082 1.8E-07 61.2 4.4 43 177-222 2-44 (223)
261 COG1875 NYN ribonuclease and A 95.9 0.041 9E-07 57.5 9.1 134 175-320 226-389 (436)
262 PF13604 AAA_30: AAA domain; P 95.8 0.016 3.4E-07 57.7 6.0 107 201-319 19-131 (196)
263 cd03228 ABCC_MRP_Like The MRP 95.8 0.037 8.1E-07 53.8 8.5 118 200-324 28-160 (171)
264 TIGR02238 recomb_DMC1 meiotic 95.8 0.03 6.5E-07 59.8 8.4 58 199-257 95-156 (313)
265 cd01133 F1-ATPase_beta F1 ATP 95.8 0.018 3.9E-07 59.4 6.4 86 201-288 70-172 (274)
266 TIGR01243 CDC48 AAA family ATP 95.8 0.13 2.9E-06 62.5 15.1 178 173-376 453-657 (733)
267 COG4608 AppF ABC-type oligopep 95.8 0.058 1.3E-06 54.8 9.7 125 200-327 39-178 (268)
268 PF03215 Rad17: Rad17 cell cyc 95.8 0.088 1.9E-06 60.1 12.3 59 174-237 20-78 (519)
269 PRK15455 PrkA family serine pr 95.7 0.0066 1.4E-07 68.1 2.9 49 174-222 77-125 (644)
270 KOG2739 Leucine-rich acidic nu 95.7 0.0052 1.1E-07 61.3 1.9 84 605-690 61-154 (260)
271 PLN03187 meiotic recombination 95.7 0.049 1.1E-06 58.6 9.4 58 199-257 125-186 (344)
272 PRK09354 recA recombinase A; P 95.7 0.028 6.2E-07 60.1 7.5 83 199-288 59-147 (349)
273 CHL00195 ycf46 Ycf46; Provisio 95.7 0.059 1.3E-06 61.1 10.3 159 173-351 228-407 (489)
274 PF00560 LRR_1: Leucine Rich R 95.7 0.0043 9.4E-08 36.7 0.7 18 611-628 2-19 (22)
275 cd01131 PilT Pilus retraction 95.7 0.019 4.2E-07 57.2 5.8 110 201-322 2-112 (198)
276 PRK06067 flagellar accessory p 95.7 0.061 1.3E-06 55.4 9.7 86 199-289 24-130 (234)
277 TIGR01650 PD_CobS cobaltochela 95.6 0.27 5.8E-06 52.2 14.3 61 175-248 47-107 (327)
278 cd03223 ABCD_peroxisomal_ALDP 95.6 0.089 1.9E-06 50.8 10.1 116 201-323 28-152 (166)
279 TIGR03499 FlhF flagellar biosy 95.6 0.039 8.5E-07 58.3 8.2 88 199-288 193-281 (282)
280 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.085 1.8E-06 49.5 9.6 103 201-322 27-130 (144)
281 TIGR02239 recomb_RAD51 DNA rep 95.6 0.05 1.1E-06 58.3 8.9 57 199-256 95-155 (316)
282 KOG0744 AAA+-type ATPase [Post 95.6 0.13 2.7E-06 53.0 11.0 79 200-288 177-259 (423)
283 cd03222 ABC_RNaseL_inhibitor T 95.5 0.06 1.3E-06 52.3 8.6 102 201-323 26-136 (177)
284 KOG2035 Replication factor C, 95.5 0.12 2.7E-06 51.9 10.7 228 175-424 15-282 (351)
285 COG0542 clpA ATP-binding subun 95.5 0.043 9.3E-07 64.4 8.7 155 173-348 170-345 (786)
286 PRK05800 cobU adenosylcobinami 95.5 0.073 1.6E-06 51.3 9.0 80 202-288 3-85 (170)
287 PRK00771 signal recognition pa 95.5 0.11 2.4E-06 57.9 11.5 88 198-288 93-184 (437)
288 KOG1051 Chaperone HSP104 and r 95.5 0.067 1.4E-06 63.8 10.1 122 174-306 563-687 (898)
289 PF07724 AAA_2: AAA domain (Cd 95.5 0.009 1.9E-07 57.7 2.5 42 200-243 3-45 (171)
290 PLN03186 DNA repair protein RA 95.5 0.069 1.5E-06 57.6 9.5 58 199-257 122-183 (342)
291 PHA02244 ATPase-like protein 95.4 0.064 1.4E-06 57.5 8.9 22 202-223 121-142 (383)
292 PLN00020 ribulose bisphosphate 95.4 0.022 4.8E-07 60.4 5.3 26 198-223 146-171 (413)
293 COG1618 Predicted nucleotide k 95.3 0.014 3E-07 53.7 3.1 23 201-223 6-28 (179)
294 KOG1644 U2-associated snRNP A' 95.3 0.02 4.3E-07 54.7 4.2 81 578-663 60-147 (233)
295 cd03216 ABC_Carb_Monos_I This 95.3 0.042 9.1E-07 52.9 6.6 114 201-321 27-144 (163)
296 PRK11608 pspF phage shock prot 95.3 0.036 7.8E-07 60.0 6.8 133 174-318 7-150 (326)
297 COG0572 Udk Uridine kinase [Nu 95.3 0.032 6.9E-07 55.0 5.7 78 198-280 6-85 (218)
298 PRK14722 flhF flagellar biosyn 95.3 0.05 1.1E-06 59.0 7.7 88 200-289 137-225 (374)
299 KOG0733 Nuclear AAA ATPase (VC 95.2 0.044 9.6E-07 61.0 7.1 97 173-289 190-292 (802)
300 PRK05439 pantothenate kinase; 95.2 0.087 1.9E-06 55.7 9.2 81 197-280 83-166 (311)
301 cd03115 SRP The signal recogni 95.2 0.096 2.1E-06 51.0 9.0 21 202-222 2-22 (173)
302 PRK14974 cell division protein 95.2 0.11 2.3E-06 55.9 10.0 113 199-314 139-259 (336)
303 cd03246 ABCC_Protease_Secretio 95.2 0.075 1.6E-06 51.7 8.2 116 201-323 29-160 (173)
304 TIGR00708 cobA cob(I)alamin ad 95.2 0.11 2.5E-06 49.5 8.9 115 201-319 6-140 (173)
305 cd01122 GP4d_helicase GP4d_hel 95.2 0.17 3.6E-06 53.6 11.3 54 200-256 30-83 (271)
306 PTZ00494 tuzin-like protein; P 95.1 0.45 9.7E-06 51.6 13.8 169 168-348 366-543 (664)
307 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.13 2.8E-06 53.0 10.0 49 199-251 20-68 (237)
308 PRK09270 nucleoside triphospha 95.1 0.073 1.6E-06 54.5 8.1 25 198-222 31-55 (229)
309 PF00485 PRK: Phosphoribulokin 95.1 0.059 1.3E-06 53.6 7.2 79 202-283 1-87 (194)
310 TIGR02974 phageshock_pspF psp 95.1 0.051 1.1E-06 58.8 7.1 45 175-223 1-45 (329)
311 KOG1644 U2-associated snRNP A' 95.1 0.022 4.8E-07 54.4 3.7 99 536-643 47-151 (233)
312 COG1136 SalX ABC-type antimicr 95.1 0.2 4.2E-06 50.1 10.5 61 266-326 147-210 (226)
313 PRK15429 formate hydrogenlyase 95.1 0.063 1.4E-06 64.8 8.7 133 173-318 376-520 (686)
314 PRK12727 flagellar biosynthesi 95.1 0.087 1.9E-06 59.2 8.9 89 199-289 349-438 (559)
315 PRK05703 flhF flagellar biosyn 95.1 0.14 3E-06 57.4 10.6 103 200-304 221-326 (424)
316 PRK08533 flagellar accessory p 95.1 0.11 2.4E-06 53.0 9.2 48 200-251 24-71 (230)
317 PRK12724 flagellar biosynthesi 95.1 0.083 1.8E-06 57.8 8.5 24 199-222 222-245 (432)
318 PRK13948 shikimate kinase; Pro 95.1 0.1 2.3E-06 50.8 8.5 24 199-222 9-32 (182)
319 cd02025 PanK Pantothenate kina 95.0 0.071 1.5E-06 54.0 7.7 21 202-222 1-21 (220)
320 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.047 1E-06 55.0 6.3 23 200-222 29-51 (213)
321 COG0396 sufC Cysteine desulfur 95.0 0.26 5.5E-06 48.6 10.8 133 200-332 30-217 (251)
322 TIGR01425 SRP54_euk signal rec 95.0 0.32 6.9E-06 53.9 13.1 25 198-222 98-122 (429)
323 cd03230 ABC_DR_subfamily_A Thi 95.0 0.12 2.6E-06 50.3 9.0 118 200-323 26-159 (173)
324 TIGR02236 recomb_radA DNA repa 95.0 0.11 2.5E-06 56.0 9.6 57 199-256 94-154 (310)
325 COG0468 RecA RecA/RadA recombi 95.0 0.083 1.8E-06 54.8 8.0 89 198-288 58-150 (279)
326 TIGR01817 nifA Nif-specific re 95.0 0.13 2.9E-06 60.1 10.8 132 172-318 195-340 (534)
327 PRK07132 DNA polymerase III su 95.0 0.52 1.1E-05 49.9 14.1 156 200-381 18-184 (299)
328 PRK04301 radA DNA repair and r 95.0 0.12 2.5E-06 56.0 9.5 57 199-256 101-161 (317)
329 KOG0731 AAA+-type ATPase conta 95.0 0.39 8.5E-06 56.2 14.0 181 174-379 312-521 (774)
330 KOG0733 Nuclear AAA ATPase (VC 94.9 0.15 3.2E-06 57.1 10.0 155 200-376 545-718 (802)
331 PRK12723 flagellar biosynthesi 94.9 0.14 3E-06 56.3 9.9 106 199-306 173-283 (388)
332 PRK10867 signal recognition pa 94.9 0.11 2.3E-06 57.9 9.2 25 198-222 98-122 (433)
333 TIGR00554 panK_bact pantothena 94.9 0.091 2E-06 55.2 8.2 25 198-222 60-84 (290)
334 KOG0730 AAA+-type ATPase [Post 94.9 0.23 5E-06 56.3 11.6 55 174-230 435-496 (693)
335 PRK07667 uridine kinase; Provi 94.9 0.029 6.3E-07 55.7 4.3 37 182-222 3-39 (193)
336 PF01583 APS_kinase: Adenylyls 94.9 0.028 6.1E-07 52.7 3.9 36 200-237 2-37 (156)
337 KOG0728 26S proteasome regulat 94.8 0.6 1.3E-05 46.1 12.7 154 175-349 148-331 (404)
338 TIGR00959 ffh signal recogniti 94.8 0.15 3.3E-06 56.7 10.0 24 199-222 98-121 (428)
339 PF07726 AAA_3: ATPase family 94.7 0.027 5.7E-07 50.3 3.1 27 203-231 2-28 (131)
340 COG0714 MoxR-like ATPases [Gen 94.7 0.049 1.1E-06 59.3 6.0 114 174-305 25-138 (329)
341 PF13238 AAA_18: AAA domain; P 94.7 0.02 4.4E-07 52.5 2.6 21 203-223 1-21 (129)
342 PTZ00301 uridine kinase; Provi 94.7 0.031 6.7E-07 55.9 4.0 23 200-222 3-25 (210)
343 PRK00889 adenylylsulfate kinas 94.7 0.13 2.8E-06 50.2 8.4 25 199-223 3-27 (175)
344 COG4618 ArpD ABC-type protease 94.7 0.11 2.4E-06 57.0 8.1 22 201-222 363-384 (580)
345 PRK05022 anaerobic nitric oxid 94.6 0.12 2.7E-06 59.7 9.2 133 172-318 186-331 (509)
346 cd03217 ABC_FeS_Assembly ABC-t 94.6 0.14 3E-06 51.2 8.4 118 200-323 26-168 (200)
347 TIGR00235 udk uridine kinase. 94.6 0.027 5.8E-07 56.8 3.2 25 198-222 4-28 (207)
348 cd01125 repA Hexameric Replica 94.6 0.23 4.9E-06 51.3 10.2 21 202-222 3-23 (239)
349 cd02019 NK Nucleoside/nucleoti 94.6 0.022 4.8E-07 45.5 2.0 22 202-223 1-22 (69)
350 COG0464 SpoVK ATPases of the A 94.5 0.3 6.5E-06 56.6 12.2 157 174-350 243-424 (494)
351 TIGR00390 hslU ATP-dependent p 94.5 0.084 1.8E-06 57.5 6.9 81 173-255 12-104 (441)
352 PTZ00035 Rad51 protein; Provis 94.5 0.25 5.4E-06 53.5 10.6 58 199-257 117-178 (337)
353 PRK05973 replicative DNA helic 94.5 0.35 7.5E-06 49.2 10.9 148 199-353 63-228 (237)
354 PF12775 AAA_7: P-loop contain 94.5 0.024 5.2E-07 59.3 2.8 94 183-296 23-117 (272)
355 KOG2982 Uncharacterized conser 94.5 0.019 4.2E-07 58.0 1.8 89 550-643 67-157 (418)
356 cd01121 Sms Sms (bacterial rad 94.4 0.21 4.6E-06 54.7 10.0 82 199-288 81-167 (372)
357 PF08298 AAA_PrkA: PrkA AAA do 94.4 0.038 8.2E-07 58.5 4.0 51 172-222 60-110 (358)
358 cd00267 ABC_ATPase ABC (ATP-bi 94.4 0.083 1.8E-06 50.5 6.2 116 201-324 26-145 (157)
359 PRK05480 uridine/cytidine kina 94.4 0.028 6.2E-07 56.7 3.1 26 198-223 4-29 (209)
360 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.16 3.4E-06 51.6 8.2 121 201-321 31-201 (254)
361 PRK12726 flagellar biosynthesi 94.4 0.27 5.8E-06 53.0 10.2 91 198-290 204-296 (407)
362 PRK08233 hypothetical protein; 94.4 0.029 6.2E-07 55.3 2.9 24 200-223 3-26 (182)
363 PRK05986 cob(I)alamin adenolsy 94.4 0.14 3.1E-06 49.6 7.5 118 200-319 22-158 (191)
364 TIGR00064 ftsY signal recognit 94.4 0.12 2.6E-06 54.2 7.6 87 199-288 71-163 (272)
365 PRK06547 hypothetical protein; 94.4 0.046 9.9E-07 52.8 4.2 26 198-223 13-38 (172)
366 KOG2739 Leucine-rich acidic nu 94.4 0.02 4.3E-07 57.2 1.7 65 605-670 39-105 (260)
367 KOG0734 AAA+-type ATPase conta 94.4 0.067 1.5E-06 58.6 5.6 52 174-225 305-362 (752)
368 KOG0743 AAA+-type ATPase [Post 94.3 1.1 2.3E-05 49.1 14.5 24 200-223 235-258 (457)
369 cd02027 APSK Adenosine 5'-phos 94.3 0.12 2.7E-06 48.7 6.9 22 202-223 1-22 (149)
370 PF00560 LRR_1: Leucine Rich R 94.3 0.024 5.3E-07 33.5 1.3 21 633-654 1-21 (22)
371 cd03369 ABCC_NFT1 Domain 2 of 94.3 0.43 9.2E-06 48.0 11.3 53 271-323 135-188 (207)
372 PF12061 DUF3542: Protein of u 94.3 0.11 2.3E-06 53.0 6.5 76 5-84 297-373 (402)
373 TIGR00150 HI0065_YjeE ATPase, 94.3 0.05 1.1E-06 49.5 3.9 41 180-224 6-46 (133)
374 cd03282 ABC_MSH4_euk MutS4 hom 94.3 0.08 1.7E-06 52.8 5.8 120 200-326 29-158 (204)
375 cd03244 ABCC_MRP_domain2 Domai 94.3 0.31 6.7E-06 49.6 10.3 22 201-222 31-52 (221)
376 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.085 1.8E-06 57.4 6.4 104 198-320 60-168 (362)
377 PRK06762 hypothetical protein; 94.2 0.031 6.6E-07 54.1 2.7 23 201-223 3-25 (166)
378 COG4088 Predicted nucleotide k 94.2 0.12 2.5E-06 49.7 6.2 21 202-222 3-23 (261)
379 cd03215 ABC_Carb_Monos_II This 94.2 0.28 6.1E-06 48.1 9.5 23 201-223 27-49 (182)
380 PF00154 RecA: recA bacterial 94.2 0.063 1.4E-06 56.8 5.0 83 199-288 52-140 (322)
381 cd03229 ABC_Class3 This class 94.2 0.12 2.5E-06 50.7 6.7 23 200-222 26-48 (178)
382 TIGR03575 selen_PSTK_euk L-ser 94.2 0.42 9.1E-06 51.4 11.2 21 203-223 2-22 (340)
383 COG1428 Deoxynucleoside kinase 94.2 0.03 6.5E-07 54.3 2.3 24 200-223 4-27 (216)
384 TIGR02858 spore_III_AA stage I 94.2 0.14 3E-06 53.3 7.5 113 199-323 110-233 (270)
385 COG1102 Cmk Cytidylate kinase 94.0 0.097 2.1E-06 48.3 5.2 44 202-258 2-45 (179)
386 KOG0729 26S proteasome regulat 94.0 0.5 1.1E-05 47.1 10.3 55 174-230 178-239 (435)
387 PRK13539 cytochrome c biogenes 94.0 0.26 5.5E-06 49.6 8.9 61 272-335 138-200 (207)
388 COG1126 GlnQ ABC-type polar am 94.0 0.76 1.6E-05 45.0 11.2 23 200-222 28-50 (240)
389 cd03213 ABCG_EPDR ABCG transpo 93.9 0.37 8.1E-06 47.8 9.9 24 200-223 35-58 (194)
390 cd03240 ABC_Rad50 The catalyti 93.9 0.27 5.8E-06 49.2 8.8 60 272-333 132-195 (204)
391 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.15 3.2E-06 53.2 7.2 40 199-240 35-74 (259)
392 cd03232 ABC_PDR_domain2 The pl 93.9 0.27 5.8E-06 48.8 8.8 23 200-222 33-55 (192)
393 PTZ00088 adenylate kinase 1; P 93.9 0.045 9.7E-07 55.6 3.2 21 203-223 9-29 (229)
394 PRK04040 adenylate kinase; Pro 93.9 0.043 9.4E-07 54.0 2.9 22 201-222 3-24 (188)
395 cd02028 UMPK_like Uridine mono 93.8 0.072 1.6E-06 52.1 4.4 22 202-223 1-22 (179)
396 PRK03839 putative kinase; Prov 93.8 0.039 8.4E-07 54.2 2.5 22 202-223 2-23 (180)
397 PRK05201 hslU ATP-dependent pr 93.8 0.12 2.5E-06 56.5 6.2 81 173-255 15-107 (443)
398 PRK10733 hflB ATP-dependent me 93.8 0.22 4.7E-06 59.3 9.1 157 174-350 153-336 (644)
399 cd03253 ABCC_ATM1_transporter 93.7 0.41 8.8E-06 49.3 10.1 61 271-333 147-208 (236)
400 cd00544 CobU Adenosylcobinamid 93.7 0.14 3E-06 49.3 6.1 79 203-288 2-82 (169)
401 PRK10875 recD exonuclease V su 93.7 0.31 6.8E-06 57.0 10.1 115 201-320 168-303 (615)
402 TIGR03881 KaiC_arch_4 KaiC dom 93.7 0.32 6.9E-06 49.9 9.3 40 199-240 19-58 (229)
403 PRK06217 hypothetical protein; 93.7 0.15 3.4E-06 50.0 6.6 22 202-223 3-24 (183)
404 COG0563 Adk Adenylate kinase a 93.7 0.08 1.7E-06 51.4 4.4 22 202-223 2-23 (178)
405 PF13481 AAA_25: AAA domain; P 93.7 0.27 5.8E-06 48.8 8.3 41 201-241 33-81 (193)
406 PRK04328 hypothetical protein; 93.6 0.24 5.1E-06 51.4 8.1 47 199-249 22-68 (249)
407 COG0467 RAD55 RecA-superfamily 93.6 0.12 2.5E-06 54.2 5.8 49 199-251 22-70 (260)
408 PF06309 Torsin: Torsin; Inte 93.6 0.21 4.4E-06 44.6 6.3 47 174-223 26-76 (127)
409 TIGR01069 mutS2 MutS2 family p 93.6 0.056 1.2E-06 65.1 3.7 24 199-222 321-344 (771)
410 KOG2123 Uncharacterized conser 93.6 0.011 2.4E-07 59.1 -1.8 81 553-644 18-100 (388)
411 PRK06995 flhF flagellar biosyn 93.5 0.38 8.3E-06 54.2 9.9 88 200-289 256-344 (484)
412 PF08433 KTI12: Chromatin asso 93.5 0.11 2.4E-06 54.1 5.3 23 201-223 2-24 (270)
413 PRK00625 shikimate kinase; Pro 93.5 0.046 9.9E-07 52.9 2.3 21 202-222 2-22 (173)
414 cd03250 ABCC_MRP_domain1 Domai 93.5 0.82 1.8E-05 45.8 11.6 24 200-223 31-54 (204)
415 COG1066 Sms Predicted ATP-depe 93.5 0.14 3.1E-06 54.7 6.1 81 200-289 93-178 (456)
416 TIGR02655 circ_KaiC circadian 93.5 0.37 8.1E-06 55.3 10.1 65 183-256 250-314 (484)
417 PRK13543 cytochrome c biogenes 93.4 0.65 1.4E-05 47.0 10.7 23 201-223 38-60 (214)
418 TIGR03740 galliderm_ABC gallid 93.4 0.58 1.3E-05 47.7 10.5 22 201-222 27-48 (223)
419 PF00006 ATP-synt_ab: ATP synt 93.3 0.16 3.4E-06 50.9 5.9 82 201-288 16-114 (215)
420 KOG0652 26S proteasome regulat 93.3 0.74 1.6E-05 45.8 10.2 50 173-222 171-227 (424)
421 cd03251 ABCC_MsbA MsbA is an e 93.3 0.84 1.8E-05 46.9 11.7 61 271-333 148-209 (234)
422 PRK10820 DNA-binding transcrip 93.3 0.15 3.3E-06 59.0 6.7 133 173-318 204-348 (520)
423 PRK09580 sufC cysteine desulfu 93.3 0.52 1.1E-05 49.0 10.2 24 200-223 27-50 (248)
424 PRK14721 flhF flagellar biosyn 93.3 0.32 7E-06 53.8 8.8 88 199-288 190-278 (420)
425 COG2842 Uncharacterized ATPase 93.3 1 2.2E-05 46.5 11.5 99 201-307 95-193 (297)
426 PRK14723 flhF flagellar biosyn 93.3 0.49 1.1E-05 56.1 10.6 87 200-288 185-272 (767)
427 PF03308 ArgK: ArgK protein; 93.3 0.13 2.7E-06 52.1 5.0 64 181-248 14-77 (266)
428 TIGR01360 aden_kin_iso1 adenyl 93.3 0.06 1.3E-06 53.3 2.9 24 199-222 2-25 (188)
429 PRK08972 fliI flagellum-specif 93.3 0.25 5.5E-06 54.5 7.8 84 201-288 163-261 (444)
430 cd03233 ABC_PDR_domain1 The pl 93.2 0.78 1.7E-05 45.9 10.9 24 200-223 33-56 (202)
431 PRK06002 fliI flagellum-specif 93.2 0.42 9E-06 53.1 9.4 86 200-288 165-263 (450)
432 KOG1532 GTPase XAB1, interacts 93.2 0.064 1.4E-06 53.6 2.8 59 198-258 17-86 (366)
433 PRK09544 znuC high-affinity zi 93.2 0.49 1.1E-05 49.2 9.6 24 200-223 30-53 (251)
434 PRK09519 recA DNA recombinatio 93.1 0.24 5.2E-06 58.9 7.8 84 199-289 59-148 (790)
435 cd03298 ABC_ThiQ_thiamine_tran 93.1 0.31 6.7E-06 49.2 7.9 23 201-223 25-47 (211)
436 cd03245 ABCC_bacteriocin_expor 93.1 0.71 1.5E-05 46.9 10.6 23 200-222 30-52 (220)
437 PF05659 RPW8: Arabidopsis bro 93.1 0.83 1.8E-05 42.5 9.8 82 2-83 3-85 (147)
438 PRK15056 manganese/iron transp 93.1 0.58 1.3E-05 49.4 10.1 23 201-223 34-56 (272)
439 KOG4252 GTP-binding protein [S 93.1 0.24 5.1E-06 46.0 6.0 36 202-238 22-57 (246)
440 cd03254 ABCC_Glucan_exporter_l 93.1 0.69 1.5E-05 47.4 10.5 53 271-323 149-202 (229)
441 cd02024 NRK1 Nicotinamide ribo 93.0 0.054 1.2E-06 52.9 2.0 22 202-223 1-22 (187)
442 TIGR03771 anch_rpt_ABC anchore 93.0 0.54 1.2E-05 47.9 9.5 23 201-223 7-29 (223)
443 cd02023 UMPK Uridine monophosp 92.9 0.055 1.2E-06 54.1 2.0 21 202-222 1-21 (198)
444 PRK00131 aroK shikimate kinase 92.9 0.065 1.4E-06 52.3 2.5 24 200-223 4-27 (175)
445 COG1703 ArgK Putative periplas 92.9 0.11 2.5E-06 53.1 4.2 67 183-253 38-104 (323)
446 PF01078 Mg_chelatase: Magnesi 92.9 0.14 3E-06 50.3 4.7 42 173-222 3-44 (206)
447 TIGR03574 selen_PSTK L-seryl-t 92.9 0.27 5.9E-06 51.1 7.2 21 203-223 2-22 (249)
448 cd01135 V_A-ATPase_B V/A-type 92.9 0.36 7.8E-06 49.8 7.8 88 201-288 70-175 (276)
449 TIGR02322 phosphon_PhnN phosph 92.9 0.069 1.5E-06 52.4 2.6 23 201-223 2-24 (179)
450 PRK12597 F0F1 ATP synthase sub 92.8 0.17 3.6E-06 56.6 5.7 88 200-288 143-246 (461)
451 TIGR01359 UMP_CMP_kin_fam UMP- 92.8 0.058 1.3E-06 53.1 2.0 21 202-222 1-21 (183)
452 PRK10751 molybdopterin-guanine 92.8 0.097 2.1E-06 50.2 3.4 25 199-223 5-29 (173)
453 PF10236 DAP3: Mitochondrial r 92.8 2.2 4.8E-05 45.7 14.1 49 330-379 258-306 (309)
454 PRK05342 clpX ATP-dependent pr 92.8 0.17 3.8E-06 56.1 5.8 50 173-222 71-130 (412)
455 KOG2123 Uncharacterized conser 92.7 0.0083 1.8E-07 59.9 -4.0 102 579-687 16-125 (388)
456 TIGR00764 lon_rel lon-related 92.7 0.25 5.4E-06 58.1 7.3 74 173-257 18-92 (608)
457 cd02021 GntK Gluconate kinase 92.7 0.068 1.5E-06 50.6 2.2 22 202-223 1-22 (150)
458 COG2019 AdkA Archaeal adenylat 92.7 0.095 2.1E-06 48.6 2.9 23 200-222 4-26 (189)
459 PF03205 MobB: Molybdopterin g 92.7 0.13 2.8E-06 47.8 3.9 39 201-240 1-39 (140)
460 PRK09280 F0F1 ATP synthase sub 92.6 0.4 8.6E-06 53.5 8.2 88 200-288 144-247 (463)
461 PRK03846 adenylylsulfate kinas 92.6 0.09 1.9E-06 52.5 3.0 25 198-222 22-46 (198)
462 PF13479 AAA_24: AAA domain 92.6 0.3 6.5E-06 49.3 6.8 20 201-220 4-23 (213)
463 TIGR01420 pilT_fam pilus retra 92.6 0.24 5.2E-06 54.1 6.6 108 201-319 123-230 (343)
464 cd00227 CPT Chloramphenicol (C 92.5 0.077 1.7E-06 51.8 2.4 23 201-223 3-25 (175)
465 PRK06731 flhF flagellar biosyn 92.5 0.57 1.2E-05 48.8 8.8 102 200-303 75-180 (270)
466 COG0529 CysC Adenylylsulfate k 92.5 0.1 2.2E-06 49.0 2.9 25 198-222 21-45 (197)
467 PRK15453 phosphoribulokinase; 92.5 0.58 1.3E-05 48.4 8.6 24 199-222 4-27 (290)
468 COG1936 Predicted nucleotide k 92.4 0.089 1.9E-06 49.3 2.5 20 202-221 2-21 (180)
469 cd00984 DnaB_C DnaB helicase C 92.4 0.66 1.4E-05 48.0 9.4 53 200-255 13-65 (242)
470 PF03266 NTPase_1: NTPase; In 92.4 0.081 1.8E-06 50.9 2.3 21 203-223 2-22 (168)
471 KOG1947 Leucine rich repeat pr 92.4 0.028 6E-07 65.2 -1.1 43 883-925 401-445 (482)
472 COG5635 Predicted NTPase (NACH 92.4 0.18 4E-06 62.0 5.9 138 200-342 222-371 (824)
473 PHA02774 E1; Provisional 92.4 0.42 9.2E-06 54.2 8.1 51 181-240 420-470 (613)
474 TIGR03263 guanyl_kin guanylate 92.3 0.091 2E-06 51.6 2.7 22 201-222 2-23 (180)
475 COG1124 DppF ABC-type dipeptid 92.3 0.098 2.1E-06 52.0 2.7 23 200-222 33-55 (252)
476 PF06745 KaiC: KaiC; InterPro 92.3 0.16 3.5E-06 51.9 4.6 86 199-288 18-124 (226)
477 PRK13949 shikimate kinase; Pro 92.3 0.086 1.9E-06 50.9 2.3 22 202-223 3-24 (169)
478 TIGR01447 recD exodeoxyribonuc 92.2 0.55 1.2E-05 54.9 9.3 22 201-222 161-182 (586)
479 PRK13765 ATP-dependent proteas 92.2 0.18 3.9E-06 59.0 5.3 75 173-257 31-105 (637)
480 TIGR03522 GldA_ABC_ATP gliding 92.2 0.69 1.5E-05 49.6 9.4 24 200-223 28-51 (301)
481 TIGR03498 FliI_clade3 flagella 92.2 0.54 1.2E-05 52.1 8.6 85 200-288 140-239 (418)
482 PRK13947 shikimate kinase; Pro 92.2 0.086 1.9E-06 51.2 2.3 21 202-222 3-23 (171)
483 KOG0473 Leucine-rich repeat pr 92.2 0.01 2.2E-07 57.7 -4.1 82 579-665 39-120 (326)
484 cd02020 CMPK Cytidine monophos 92.2 0.082 1.8E-06 49.8 2.0 21 202-222 1-21 (147)
485 PF13504 LRR_7: Leucine rich r 92.2 0.07 1.5E-06 29.2 0.9 10 634-643 3-12 (17)
486 TIGR00416 sms DNA repair prote 92.1 0.74 1.6E-05 52.1 9.9 40 199-240 93-132 (454)
487 PRK07594 type III secretion sy 92.1 0.55 1.2E-05 52.1 8.6 85 200-288 155-254 (433)
488 COG3640 CooC CO dehydrogenase 92.1 0.19 4.2E-06 49.5 4.4 42 202-244 2-43 (255)
489 cd01134 V_A-ATPase_A V/A-type 92.1 0.99 2.1E-05 48.1 9.9 47 201-251 158-205 (369)
490 smart00534 MUTSac ATPase domai 92.1 0.66 1.4E-05 45.6 8.4 21 202-222 1-21 (185)
491 PRK08149 ATP synthase SpaL; Va 92.0 0.73 1.6E-05 51.1 9.4 85 200-288 151-250 (428)
492 PF08477 Miro: Miro-like prote 92.0 0.11 2.3E-06 46.9 2.5 22 203-224 2-23 (119)
493 KOG0727 26S proteasome regulat 92.0 0.23 5.1E-06 48.9 4.8 50 174-223 156-212 (408)
494 PRK15424 propionate catabolism 92.0 0.28 6E-06 56.4 6.3 47 173-223 219-265 (538)
495 COG0541 Ffh Signal recognition 91.9 1.8 3.8E-05 47.2 11.7 41 183-223 80-123 (451)
496 cd01132 F1_ATPase_alpha F1 ATP 91.9 0.29 6.2E-06 50.5 5.7 84 201-288 70-170 (274)
497 TIGR02329 propionate_PrpR prop 91.9 0.3 6.6E-06 56.2 6.6 46 174-223 213-258 (526)
498 COG0003 ArsA Predicted ATPase 91.9 0.22 4.7E-06 53.1 5.0 49 200-250 2-50 (322)
499 PRK12339 2-phosphoglycerate ki 91.9 0.12 2.6E-06 51.1 2.9 24 200-223 3-26 (197)
500 cd01136 ATPase_flagellum-secre 91.9 0.46 9.9E-06 50.8 7.4 84 201-288 70-168 (326)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-91 Score=823.69 Aligned_cols=819 Identities=26% Similarity=0.391 Sum_probs=603.3
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhhccchhhH
Q 042336 2 VDAFVSVVLEQLISVAVEEAKKEVRLVDGVDQEVEKLTSNFRAIQAVIVDAEQRQIKEESVRLWLDQLKHTSYDMEDVLD 81 (944)
Q Consensus 2 a~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld 81 (944)
|++.++..++++.+ ++.+++..+.++++.+..|+++|..++++++|++.++.....+..|.+.+++++|++||.++
T Consensus 1 ~~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CCeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777877 88899999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccccccccccccCCcccccccccchhhHHHHHHHHHHHHHHHHHHhhcccCcceec--cCC-
Q 042336 82 EWNTARLKLQIEGVDQNALVPQKKKKVCSFFPATACFGFKQVFLRRDIALKIKAINDKLNDIVKQKDIFNFHVI--RGT- 158 (944)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~--~~~- 158 (944)
.|.......+..+.-. ......+. .|++ .+++..+..+..+.+++.++.+....++.... .+.
T Consensus 77 ~~~v~~~~~~~~~~l~------~~~~~~~~----~c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~ 142 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLS------TRSVERQR----LCLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGE 142 (889)
T ss_pred HHHHHHHHHHHhHHhh------hhHHHHHH----Hhhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccc
Confidence 9988776543322100 00001111 1211 45566677777777777777776666654432 111
Q ss_pred --CCCccccccccccCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcc-ccccCceeEE
Q 042336 159 --EKPERIQSTALINVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDND-VINNFEKRIW 235 (944)
Q Consensus 159 --~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~w 235 (944)
.+...+++.+..+... ||.+..++++.+.|..++ ..+++|+||||+||||||+.++|+.. ++.+|+.++|
T Consensus 143 ~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iW 215 (889)
T KOG4658|consen 143 SLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIW 215 (889)
T ss_pred cccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEE
Confidence 1112233444444444 999999999999998653 28999999999999999999999987 9999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEE
Q 042336 236 VSVSDPFDEYRVAKAIIEALEGSAPNLG--ELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKIL 313 (944)
Q Consensus 236 v~vs~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 313 (944)
|.||+.++...++++|++.++....... ..++++..+.+.|++|||+|||||||+. .+|+.+..++|...+||+|+
T Consensus 216 V~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~Kvv 293 (889)
T KOG4658|consen 216 VVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVV 293 (889)
T ss_pred EEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEE
Confidence 9999999999999999999987543332 2468889999999999999999999986 56999999999999999999
Q ss_pred EEccchhhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCH
Q 042336 314 VTTRKETVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTT 392 (944)
Q Consensus 314 vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~ 392 (944)
+|||++.|+.. |++...+++++|+.+|||.||++.||.... ..++.++++|++|+++|+|+|||+.++|+.|+.+.+.
T Consensus 294 lTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~ 372 (889)
T KOG4658|consen 294 LTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTV 372 (889)
T ss_pred EEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcH
Confidence 99999999999 888899999999999999999999987644 3345599999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhh----hhhhccchhhHHHhhhhcChHHHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccC-CCchH
Q 042336 393 EEWQNILDSEMWQ----LEEFEKDLLAPLLLSYTDLPSRIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTK-GNKEM 467 (944)
Q Consensus 393 ~~w~~~~~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~-~~~~~ 467 (944)
.+|+++.+...+. ..+..+.++++|++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+. .++.+
T Consensus 373 ~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~ 452 (889)
T KOG4658|consen 373 QEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA 452 (889)
T ss_pred HHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch
Confidence 9999999876555 223457899999999999999999999999999999999999999999999999984 46889
Q ss_pred HHHHHHHHHHHHhccCCcccccccC--eEEechHHHHHHHHhhc-----ccceEeccC-CccccccccCCCCceEEEEEE
Q 042336 468 EMIGEEYFDYLATRSFFQEFVEVDI--IYKMHDIVHDFAQFLTK-----NECFAKEID-GVEGSLWINTSEEELRHSMLV 539 (944)
Q Consensus 468 e~~~~~~~~~L~~~~li~~~~~~~~--~~~mH~lv~~~~~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~~r~lsl~ 539 (944)
+++|++|+.+|++++|++.....++ .|+|||+|||+|.++++ +|+.+.... +... ..-...+..+|+++++
T Consensus 453 ~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 453 EDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWNSVRRMSLM 531 (889)
T ss_pred hcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchhheeEEEEe
Confidence 9999999999999999998765433 39999999999999999 666444433 2221 2223356789999999
Q ss_pred eCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcc
Q 042336 540 FGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWL 619 (944)
Q Consensus 540 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~ 619 (944)
.+.....+. -..+++|+||.+.++.... ......+|..++.||||||++|.. +.++|++|++|.|||||+|+++
T Consensus 532 ~~~~~~~~~-~~~~~~L~tLll~~n~~~l--~~is~~ff~~m~~LrVLDLs~~~~---l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 532 NNKIEHIAG-SSENPKLRTLLLQRNSDWL--LEISGEFFRSLPLLRVLDLSGNSS---LSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred ccchhhccC-CCCCCccceEEEeecchhh--hhcCHHHHhhCcceEEEECCCCCc---cCcCChHHhhhhhhhcccccCC
Confidence 998764333 3457799999999875211 233455689999999999999875 7899999999999999999999
Q ss_pred cccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCc
Q 042336 620 EIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNK 699 (944)
Q Consensus 620 ~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~ 699 (944)
.|..+|.++++|.+|++|++..+..+..+|..+..|++||+|.+.+.....-...++.+.+|++|..+.....+. ..
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---~~ 682 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---LL 682 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---Hh
Confidence 999999999999999999999998777777777779999999994432111112244445555555433322210 01
Q ss_pred ccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCC-
Q 042336 700 ACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALR- 778 (944)
Q Consensus 700 ~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 778 (944)
...+.....|..+...+.+.. .........+..+.+|++|.+..+.+..... .......
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~---------------~~~~~~~~ 742 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVI---------------EWEESLIV 742 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcc-----cccceeecccccccCcceEEEEcCCCchhhc---------------ccccccch
Confidence 111222222221111111111 1112233456667778888887774332100 0000000
Q ss_pred --CCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccceEeCccccCccCccC
Q 042336 779 --PPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAF 855 (944)
Q Consensus 779 --~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f 855 (944)
..+++..+.+.++.....+.|....++|+.|.+..|...+.+.+ ...+..++.+.+ .|
T Consensus 743 ~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~-------------------~f 803 (889)
T KOG4658|consen 743 LLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELIL-------------------PF 803 (889)
T ss_pred hhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEe-------------------cc
Confidence 13345555555666666677777777888888877776654332 333444443222 24
Q ss_pred cccccc-ccccccccccccccCCccccCcccceeeecccccccCCC
Q 042336 856 PKLKHL-IFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLP 900 (944)
Q Consensus 856 ~~L~~L-~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 900 (944)
+++..+ .+.+++++..+...+- .+++|+.+.+..||+++.+|
T Consensus 804 ~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 804 NKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred cccccceeeecCCCCceeEeccc---CccchhheehhcCcccccCc
Confidence 444444 3444444444443332 45567777777777766555
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.8e-62 Score=605.27 Aligned_cols=683 Identities=20% Similarity=0.267 Sum_probs=447.1
Q ss_pred ccCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEe---CCC-----
Q 042336 170 INVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSV---SDP----- 241 (944)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~----- 241 (944)
.+...+||++++++++..+|.... +..++|+|+||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 345679999999999999886433 4689999999999999999999999 67789998888742 111
Q ss_pred ------CC-HHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEE
Q 042336 242 ------FD-EYRVAKAIIEALEGSAP-NLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKIL 313 (944)
Q Consensus 242 ------~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 313 (944)
++ ...+.++++.++..... .... ...+++.++++|+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 12344555555433221 1111 14567778999999999999864 56888887666678899999
Q ss_pred EEccchhhhhcccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCHH
Q 042336 314 VTTRKETVARMMESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTE 393 (944)
Q Consensus 314 vTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~ 393 (944)
||||+..++..++..++|+++.+++++||+||+++||+... .++.+.+++++|+++|+|+|||++++|++|+.+ +..
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 99999999988777889999999999999999999997643 345688999999999999999999999999865 688
Q ss_pred HHHHHHhhhhhhhhhhccchhhHHHhhhhcChH-HHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccCCCchHHHHHH
Q 042336 394 EWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPS-RIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKEMEMIGE 472 (944)
Q Consensus 394 ~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~ 472 (944)
+|..++.+..... +..+..+|++||++|++ ..|.||+++|+|+.++.++ .+..|.+.+.....
T Consensus 406 ~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~---------- 469 (1153)
T PLN03210 406 DWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN---------- 469 (1153)
T ss_pred HHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch----------
Confidence 9999998765432 34699999999999987 5999999999999886543 46778887655322
Q ss_pred HHHHHHHhccCCcccccccCeEEechHHHHHHHHhhcccceEeccCCcccccc----------ccCCCCceEEEEEEeCC
Q 042336 473 EYFDYLATRSFFQEFVEVDIIYKMHDIVHDFAQFLTKNECFAKEIDGVEGSLW----------INTSEEELRHSMLVFGN 542 (944)
Q Consensus 473 ~~~~~L~~~~li~~~~~~~~~~~mH~lv~~~~~~~~~~e~~~~~~~~~~~~~~----------~~~~~~~~r~lsl~~~~ 542 (944)
..++.|+++||++... ..+.|||++|+||++++.++.. ..+.....| .+.....++++++....
T Consensus 470 ~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred hChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 2388999999997643 3489999999999999876631 111111111 12344667888776554
Q ss_pred CCc---chhhccCCCCeeEEEEecCCccccc--chhHHHHhhcC-CcccEEEeccCCCcccccccchhhhcccccceecc
Q 042336 543 EAS---FPVFMFNAKKLRSLLIHNIPIEVSS--SPVLQVLFNQF-TCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKL 616 (944)
Q Consensus 543 ~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~--~~~l~~~~~~~-~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~L 616 (944)
... ....+..+++|+.|.+......... .-.++.-|..+ ..||.|.+.++. +..+|..+ ...+|+.|+|
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~----l~~lP~~f-~~~~L~~L~L 618 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP----LRCMPSNF-RPENLVKLQM 618 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC----CCCCCCcC-CccCCcEEEC
Confidence 432 2345677888888887654211000 00011112233 245666665555 45555544 3455555555
Q ss_pred CcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeec-cccccccccccccCCCCCCcCCceEecccccC
Q 042336 617 HWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIF-DVNFVEYMPKGIERLTCLRTLSEFVVVSRSDK 695 (944)
Q Consensus 617 s~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l-~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~ 695 (944)
+++.+..+|..+..+.+|++|+|++|..+..+|. +..+++|++|++ +|+.+..+|..++++++|+.|. ...+..
T Consensus 619 ~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~----L~~c~~ 693 (1153)
T PLN03210 619 QGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD----MSRCEN 693 (1153)
T ss_pred cCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe----CCCCCC
Confidence 5555555555555555555555555554555543 555555555555 2334455555555555555554 222221
Q ss_pred CCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhh--hhhc-CCCcccHHH
Q 042336 696 YGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEE--EVTE-GKNEVSHEA 772 (944)
Q Consensus 696 ~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~--~~~~-~~~~~~~~~ 772 (944)
....+..+ ++++|+ .+.+.++..+..... ...+|+.|+++.+.+........ .... .........
T Consensus 694 L~~Lp~~i-~l~sL~----~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 694 LEILPTGI-NLKSLY----RLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred cCccCCcC-CCCCCC----EEeCCCCCCcccccc-------ccCCcCeeecCCCccccccccccccccccccccccchhh
Confidence 12122211 122222 222222222111100 01234444444333211100000 0000 000000000
Q ss_pred Hh--------ccCCCCCCCceEEEeeCC-CCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEe
Q 042336 773 IC--------EALRPPPNLESLDVWKYR-GETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRV 843 (944)
Q Consensus 773 ~~--------~~l~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 843 (944)
+. .....+++|+.|+|++|. ...+|.++..+++|+.|+|++|..++.+|....+++|+.|.+++|..+..+
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence 00 011235789999999986 456899999999999999999998888888668999999999999866443
Q ss_pred CccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcchhhh
Q 042336 844 GDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRILEER 923 (944)
Q Consensus 844 ~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 923 (944)
+. ..++|+.|.+ .++. +...|..+..+++|+.|+|++|++++.+|..+..+++|+.+++++|+.|+..
T Consensus 842 p~--------~~~nL~~L~L---s~n~-i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 842 PD--------ISTNISDLNL---SRTG-IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cc--------cccccCEeEC---CCCC-CccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 22 2245555544 3332 3344556778999999999999999999998889999999999999987643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.5e-44 Score=382.30 Aligned_cols=279 Identities=39% Similarity=0.629 Sum_probs=227.4
Q ss_pred chhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhC
Q 042336 178 RDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEG 257 (944)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 257 (944)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++..++.+|+.++||.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 478999999999999999999999977789999999999999999999999999999988
Q ss_pred CCC---CCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhhhcccc-cceEeC
Q 042336 258 SAP---NLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVARMMES-IDILII 333 (944)
Q Consensus 258 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l 333 (944)
... ...+.+.....+.+.|.++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567788999999999999999999999875 4788888888888889999999999998887665 779999
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCHHHHHHHHhhhhhhhhh---hc
Q 042336 334 KELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTEEWQNILDSEMWQLEE---FE 410 (944)
Q Consensus 334 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~~ 410 (944)
++|+.++|++||.+.++... ....+..++.+++|+++|+|+||||+++|++|+.+.+..+|..+++.......+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987665 223345577899999999999999999999997766778899988775555432 34
Q ss_pred cchhhHHHhhhhcChHHHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccCC
Q 042336 411 KDLLAPLLLSYTDLPSRIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKG 463 (944)
Q Consensus 411 ~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~ 463 (944)
..+..++.+||+.||++.|+||+|||+||+++.|+++.|+++|+|||||...+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 67999999999999999999999999999999999999999999999998753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=4.4e-23 Score=259.34 Aligned_cols=306 Identities=21% Similarity=0.254 Sum_probs=169.8
Q ss_pred CCcccEEEeccCCCcccccccchhhhcccccceeccCccccc-ccCccccCCCcccEEEecCccCCcccCcccccCCCCc
Q 042336 581 FTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIK-ELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLR 659 (944)
Q Consensus 581 ~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 659 (944)
+++|++|+|++|.. ...+|..++++.+|++|+|++|.+. .+|..++++.+|++|++++|.....+|..++++++|+
T Consensus 139 l~~L~~L~Ls~n~~---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 139 IPNLETLDLSNNML---SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cCCCCEEECcCCcc---cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 44455555555542 1245556666666666666666643 5566666666666666666654445666666666666
Q ss_pred eeeccccccc-cccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccC
Q 042336 660 HLIFDVNFVE-YMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKK 738 (944)
Q Consensus 660 ~L~l~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 738 (944)
+|+++.|.+. .+|..++++++|++|+ ...|...+..+..++.+++|+.| .+.... ........+..+
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~----L~~n~l~~~~p~~l~~l~~L~~L----~L~~n~----l~~~~p~~l~~l 283 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLD----LVYNNLTGPIPSSLGNLKNLQYL----FLYQNK----LSGPIPPSIFSL 283 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEE----CcCceeccccChhHhCCCCCCEE----ECcCCe----eeccCchhHhhc
Confidence 6666555443 4555566666666665 33333333344445555555433 221110 001112234455
Q ss_pred CCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCC-CCChhhhcCCCccEEEeeccCCC
Q 042336 739 KNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGE-TLPSWIMSLNKLKKLELSFCNKF 817 (944)
Q Consensus 739 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~ 817 (944)
++|+.|++++|.+.+. ++..+..+++|+.|++++|... .+|.++..+++|+.|+|++|...
T Consensus 284 ~~L~~L~Ls~n~l~~~------------------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 284 QKLISLDLSDNSLSGE------------------IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred cCcCEEECcCCeeccC------------------CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 6666666666644332 2344555667777777776643 46666777777777777777666
Q ss_pred CcCCC-CCCCCCcceeeecccccceEeCcc----------------ccCccCccCccccccccccccccccccccCCccc
Q 042336 818 EIMPP-LGKLPSLELLEVFALQSVKRVGDE----------------FLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDIT 880 (944)
Q Consensus 818 ~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~----------------~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~ 880 (944)
..+|. ++.+++|+.|+++++.-...++.. +.+..+..|..+..|+..++.++......|..+.
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 55554 666777777777665421111111 1111112222333333444444444434445556
Q ss_pred cCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcc
Q 042336 881 IMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 881 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
.+++|+.|++++|.....+|..+..+++|+.|++++|..
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 777788888887776566666666778888888888765
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2e-22 Score=253.52 Aligned_cols=361 Identities=20% Similarity=0.163 Sum_probs=219.8
Q ss_pred CceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccc
Q 042336 531 EELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIH 610 (944)
Q Consensus 531 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~ 610 (944)
...+++.+..+..... .....+++|++|++.++... ..++..+.++++|++|+|++|.. ...+|..++++++
T Consensus 118 ~~L~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~~~~l~~ 189 (968)
T PLN00113 118 SSLRYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVL---VGKIPNSLTNLTS 189 (968)
T ss_pred CCCCEEECcCCccccc-cCccccCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcc---cccCChhhhhCcC
Confidence 4556666655544321 11234566777777666432 12344467778888888887773 3457777888888
Q ss_pred cceeccCccccc-ccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccc-cccccccCCCCCCcCCceE
Q 042336 611 LRYFKLHWLEIK-ELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVE-YMPKGIERLTCLRTLSEFV 688 (944)
Q Consensus 611 Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~~~~ 688 (944)
|++|+|++|.+. .+|..++++.+|++|++++|.....+|..++++++|++|+++.|.+. .+|..++++++|+.|.
T Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--- 266 (968)
T PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF--- 266 (968)
T ss_pred CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE---
Confidence 888888887765 67777888888888888887755567777888888888888666543 5666777777777776
Q ss_pred ecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCC---
Q 042336 689 VVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGK--- 765 (944)
Q Consensus 689 ~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~--- 765 (944)
...|...+..+..+..+.+|+.| .+.... ........+..+++|+.|+++.|.+.+..+.........
T Consensus 267 -L~~n~l~~~~p~~l~~l~~L~~L----~Ls~n~----l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 267 -LYQNKLSGPIPPSIFSLQKLISL----DLSDNS----LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred -CcCCeeeccCchhHhhccCcCEE----ECcCCe----eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 34444444444455555555433 221110 001111233445556666665554332211000000000
Q ss_pred ---CcccHHHHhccCCCCCCCceEEEeeCCC-CCCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccc
Q 042336 766 ---NEVSHEAICEALRPPPNLESLDVWKYRG-ETLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSV 840 (944)
Q Consensus 766 ---~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l 840 (944)
.......++..+..+++|+.|++++|.. ..+|.++..+++|+.|++++|.....+|. ++.+++|+.|.+.+|.-
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l- 416 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF- 416 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe-
Confidence 0000011233445556677777766653 24566666667777777777766555554 66778888888877652
Q ss_pred eEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcch
Q 042336 841 KRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRIL 920 (944)
Q Consensus 841 ~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 920 (944)
.+..+..|..++.|...+++++......+..+..+++|+.|++++|.....+|..+ ..++|+.|++++|...
T Consensus 417 -------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 417 -------SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS 488 (968)
T ss_pred -------eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccC
Confidence 12223356677777777777776655555555679999999999999887888765 4689999999999763
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.1e-24 Score=228.62 Aligned_cols=346 Identities=20% Similarity=0.180 Sum_probs=262.4
Q ss_pred CCceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhccc
Q 042336 530 EEELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLI 609 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~ 609 (944)
...++.+.+.......+|..+..+.+|..|.+.++... . +..-++.++.||.+++..|+.. -..+|..|..|.
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~----~-vhGELs~Lp~LRsv~~R~N~LK--nsGiP~diF~l~ 103 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI----S-VHGELSDLPRLRSVIVRDNNLK--NSGIPTDIFRLK 103 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH----h-hhhhhccchhhHHHhhhccccc--cCCCCchhcccc
Confidence 34566777777677778888899999999988887632 2 2222688899999999988842 235899999999
Q ss_pred ccceeccCcccccccCccccCCCcccEEEecCccCCcccCccc-ccCCCCceeeccccccccccccccCCCCCCcCCceE
Q 042336 610 HLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGV-GKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFV 688 (944)
Q Consensus 610 ~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~ 688 (944)
.|..||||+|.+.+.|..+..-+|+-+|+|++|+ +..+|..+ .+|+-|-+|+++.|.+..+|+.+.+|..||+|.
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~--- 179 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK--- 179 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh---
Confidence 9999999999999999999999999999999988 99999864 689999999999999999999999999999997
Q ss_pred ecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcc
Q 042336 689 VVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEV 768 (944)
Q Consensus 689 ~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 768 (944)
.++|... ..-+..|+.++.| .+-...+...........+..+.||+.++++.|++..
T Consensus 180 -Ls~NPL~---hfQLrQLPsmtsL----~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--------------- 236 (1255)
T KOG0444|consen 180 -LSNNPLN---HFQLRQLPSMTSL----SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--------------- 236 (1255)
T ss_pred -cCCChhh---HHHHhcCccchhh----hhhhcccccchhhcCCCchhhhhhhhhccccccCCCc---------------
Confidence 4443221 1223444444433 2333333333333444567778899999999885443
Q ss_pred cHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccceEeCccc
Q 042336 769 SHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSVKRVGDEF 847 (944)
Q Consensus 769 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~ 847 (944)
+++.+...++|.+|+|++|..+.+........+|.+|+|+.|+... +|. +..|+.|+.|.+.++. +.
T Consensus 237 ----vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~Nk-L~------ 304 (1255)
T KOG0444|consen 237 ----VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNK-LT------ 304 (1255)
T ss_pred ----chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCc-cc------
Confidence 5778888899999999999988877667778899999999987654 554 8889999999887654 11
Q ss_pred cCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcchhhh
Q 042336 848 LGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRILEER 923 (944)
Q Consensus 848 ~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 923 (944)
+...+.+..+|..|+.....++. +...|..+..|+.|+.|.++.|. +-.+|..+.-++.|+.|++.+||.|...
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCC
Confidence 22223456677777777766543 45556678899999999999775 6679999999999999999999987543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=5.8e-22 Score=210.32 Aligned_cols=322 Identities=23% Similarity=0.285 Sum_probs=238.1
Q ss_pred CCceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhccc
Q 042336 530 EEELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLI 609 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~ 609 (944)
-++..|+++..+...++...+..++.||++.+..+..-. ..+.++ +-.+..|.+|||++|. +.+.|..+...+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn--sGiP~d-iF~l~dLt~lDLShNq----L~EvP~~LE~AK 126 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN--SGIPTD-IFRLKDLTILDLSHNQ----LREVPTNLEYAK 126 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc--CCCCch-hcccccceeeecchhh----hhhcchhhhhhc
Confidence 356788998888877777788899999999999876432 222344 6678999999999999 899999999999
Q ss_pred ccceeccCcccccccCcc-ccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccccc-ccccCCCCCCcCCce
Q 042336 610 HLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMP-KGIERLTCLRTLSEF 687 (944)
Q Consensus 610 ~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~~~ 687 (944)
++-+|+||+|.|.++|.+ +-+|.-|-+|||++|. +..+|+-+..|.+|+.|.+++|.+.... ..+-.+++|++|.
T Consensus 127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh-- 203 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH-- 203 (1255)
T ss_pred CcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh--
Confidence 999999999999999988 4589999999999998 9999999999999999999888665431 1122355555554
Q ss_pred EecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCc
Q 042336 688 VVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNE 767 (944)
Q Consensus 688 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 767 (944)
..+.+......|..+..+.+|..+ .++-.++..++ ..+-++.+|+.|+|+.|++...
T Consensus 204 -ms~TqRTl~N~Ptsld~l~NL~dv--DlS~N~Lp~vP-------ecly~l~~LrrLNLS~N~iteL------------- 260 (1255)
T KOG0444|consen 204 -MSNTQRTLDNIPTSLDDLHNLRDV--DLSENNLPIVP-------ECLYKLRNLRRLNLSGNKITEL------------- 260 (1255)
T ss_pred -cccccchhhcCCCchhhhhhhhhc--cccccCCCcch-------HHHhhhhhhheeccCcCceeee-------------
Confidence 233333344577778888887765 33333343332 3466778999999999976542
Q ss_pred ccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCC-CcCCC-CCCCCCcceeeecccccceEeCc
Q 042336 768 VSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKF-EIMPP-LGKLPSLELLEVFALQSVKRVGD 845 (944)
Q Consensus 768 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~~L~~L~L~~~~~l~~~~~ 845 (944)
--......+|++|+++.|..+.+|+.+..++.|+.|.+.+|... +.+|+ +|.|.+|+.+...++. ++.++.
T Consensus 261 ------~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPE 333 (1255)
T KOG0444|consen 261 ------NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE 333 (1255)
T ss_pred ------eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCch
Confidence 11112235899999999999999999999999999999988743 45665 8999999999887653 333333
Q ss_pred cccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCC
Q 042336 846 EFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLP 900 (944)
Q Consensus 846 ~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 900 (944)
.+. .+++|+.|.+ ..+.. ...|..+.-+|.|+.|++..||++.--|
T Consensus 334 glc-----RC~kL~kL~L---~~NrL-iTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 334 GLC-----RCVKLQKLKL---DHNRL-ITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhh-----hhHHHHHhcc---cccce-eechhhhhhcCCcceeeccCCcCccCCC
Confidence 222 3455665544 34443 3456667789999999999999987544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=9.3e-21 Score=200.33 Aligned_cols=341 Identities=21% Similarity=0.219 Sum_probs=178.9
Q ss_pred CCceEEEEEEeCCCCc-chhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhc
Q 042336 530 EEELRHSMLVFGNEAS-FPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQK 607 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~ 607 (944)
+...+.+.+..+.+.. .+..+.+.++|..+.+..+.. ..+|.+.....+|..|+|.+|. +.++. +++..
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-----t~IP~f~~~sghl~~L~L~~N~----I~sv~se~L~~ 147 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-----TRIPRFGHESGHLEKLDLRHNL----ISSVTSEELSA 147 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-----hhcccccccccceeEEeeeccc----cccccHHHHHh
Confidence 4455556666665443 244566777777777776652 2234433334457777777666 54443 45666
Q ss_pred ccccceeccCcccccccCcc-ccCCCcccEEEecCccCCcccC-cccccCCCCceeecccccccccccc-ccCCCCCCcC
Q 042336 608 LIHLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLP-QGVGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTL 684 (944)
Q Consensus 608 l~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L 684 (944)
++.||.||||.|.|.++|.. +..=.++++|+|++|. +..+- ..|..|.+|-.|.++.|.+..+|.. +.+|++|+.|
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 67777777777776665543 3444567777777766 44443 2355666666777766766666644 4446666666
Q ss_pred CceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcC
Q 042336 685 SEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEG 764 (944)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 764 (944)
. ...|.+....+..+..|.+|++|. +.-.++.++.+ ..+-.+.+++.|+|..|++...
T Consensus 227 d----LnrN~irive~ltFqgL~Sl~nlk--lqrN~I~kL~D------G~Fy~l~kme~l~L~~N~l~~v---------- 284 (873)
T KOG4194|consen 227 D----LNRNRIRIVEGLTFQGLPSLQNLK--LQRNDISKLDD------GAFYGLEKMEHLNLETNRLQAV---------- 284 (873)
T ss_pred h----ccccceeeehhhhhcCchhhhhhh--hhhcCcccccC------cceeeecccceeecccchhhhh----------
Confidence 5 333333333344555555555542 22222222221 2233455666666666543321
Q ss_pred CCcccHHHHhccCCCCCCCceEEEeeCCCCCC-ChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccceE
Q 042336 765 KNEVSHEAICEALRPPPNLESLDVWKYRGETL-PSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSVKR 842 (944)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~ 842 (944)
-..++..+..|+.|+++.|...++ ++....+++|+.|+|++|.....-+. +..|..|+.|.|+.+.
T Consensus 285 --------n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns---- 352 (873)
T KOG4194|consen 285 --------NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS---- 352 (873)
T ss_pred --------hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc----
Confidence 112344455566666666554332 22233455666666666554332222 4555566666665432
Q ss_pred eCccccCccCccCcccccccccccccccc-cccc--CCccccCcccceeeecccccccCCCC-CCCCCCCcCeEEEecCc
Q 042336 843 VGDEFLGIEIVAFPKLKHLIFVDLDEWEE-WENE--KNDITIMPQLNSLEIRDCHKLKSLPH-QILGNTTLQMLKIYNCR 918 (944)
Q Consensus 843 ~~~~~~~~~~~~f~~L~~L~l~~l~~~~~-~~~~--~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 918 (944)
+.......|..++.|..+++.+++. |..+ ...+..||+|++|.+.+| +++.+|. .+..+++|++|++.+|+
T Consensus 353 ----i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 353 ----IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ----hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 1111122455555555555555543 2221 112334666666666665 3565553 24456666666666665
Q ss_pred c
Q 042336 919 I 919 (944)
Q Consensus 919 ~ 919 (944)
+
T Consensus 428 i 428 (873)
T KOG4194|consen 428 I 428 (873)
T ss_pred c
Confidence 5
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.1e-20 Score=197.68 Aligned_cols=341 Identities=22% Similarity=0.219 Sum_probs=246.3
Q ss_pred CceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhccc
Q 042336 531 EELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLI 609 (944)
Q Consensus 531 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~ 609 (944)
.+...+.+..+....+|.......+|..|.+.++-+.. .-.+.+.-++.||+|||+.|. +.++| .++..-.
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s----v~se~L~~l~alrslDLSrN~----is~i~~~sfp~~~ 173 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS----VTSEELSALPALRSLDLSRNL----ISEIPKPSFPAKV 173 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeecccccc----ccHHHHHhHhhhhhhhhhhch----hhcccCCCCCCCC
Confidence 45556677777777678777778889999999986432 223336778899999999998 77877 4566778
Q ss_pred ccceeccCcccccccCc-cccCCCcccEEEecCccCCcccCcc-cccCCCCceeeccccccccc-cccccCCCCCCcCCc
Q 042336 610 HLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLIFDVNFVEYM-PKGIERLTCLRTLSE 686 (944)
Q Consensus 610 ~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~~ 686 (944)
++++|+|++|.|+.+-. .+.+|.+|-+|.|+.|+ +..+|.. |.+|++|+.|++..|.+..+ -..+..|.+||.|.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk- 251 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK- 251 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh-
Confidence 89999999999997754 48889999999999998 8899875 45699999999998887765 23478888888887
Q ss_pred eEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCC
Q 042336 687 FVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKN 766 (944)
Q Consensus 687 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 766 (944)
...|.+.......+-.|.++..| .|....+..+.. ..+-+++.|+.|+++.|.+...
T Consensus 252 ---lqrN~I~kL~DG~Fy~l~kme~l--~L~~N~l~~vn~------g~lfgLt~L~~L~lS~NaI~ri------------ 308 (873)
T KOG4194|consen 252 ---LQRNDISKLDDGAFYGLEKMEHL--NLETNRLQAVNE------GWLFGLTSLEQLDLSYNAIQRI------------ 308 (873)
T ss_pred ---hhhcCcccccCcceeeeccccee--ecccchhhhhhc------ccccccchhhhhccchhhhhee------------
Confidence 45554443333344455666555 344444433332 4577889999999999966543
Q ss_pred cccHHHHhccCCCCCCCceEEEeeCCCCCCChh-hhcCCCccEEEeeccCCCCcCC-CCCCCCCcceeeecccccceEeC
Q 042336 767 EVSHEAICEALRPPPNLESLDVWKYRGETLPSW-IMSLNKLKKLELSFCNKFEIMP-PLGKLPSLELLEVFALQSVKRVG 844 (944)
Q Consensus 767 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~ 844 (944)
-.+.+..+++|+.|+|++|...++++. +..+..|+.|+|+.|.....-. .+..+.+|++|+|+.+.---.
T Consensus 309 ------h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~-- 380 (873)
T KOG4194|consen 309 ------HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC-- 380 (873)
T ss_pred ------ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE--
Confidence 246778889999999999998888654 5678999999999986543211 267889999999987651111
Q ss_pred ccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEec
Q 042336 845 DEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYN 916 (944)
Q Consensus 845 ~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 916 (944)
.......|..|..|.-+.+.++..-......+..+++|+.|++.+|+.-.--|..+..+ .|++|.+..
T Consensus 381 ---IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 381 ---IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ---EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 11223345555555555666665544444457789999999999998554445566666 888887643
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=4.1e-21 Score=194.45 Aligned_cols=259 Identities=24% Similarity=0.299 Sum_probs=176.5
Q ss_pred EEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceec
Q 042336 536 SMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFK 615 (944)
Q Consensus 536 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~ 615 (944)
+.+..+........+.+...|.+|.+.++.. ..++..+..+..+..|+.+++. +..+|..++.+..|+.|+
T Consensus 50 lils~N~l~~l~~dl~nL~~l~vl~~~~n~l-----~~lp~aig~l~~l~~l~vs~n~----ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 50 LILSHNDLEVLREDLKNLACLTVLNVHDNKL-----SQLPAAIGELEALKSLNVSHNK----LSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhccCchhhccHhhhcccceeEEEeccchh-----hhCCHHHHHHHHHHHhhcccch----HhhccHHHhhhhhhhhhh
Confidence 4455555554556667777888888877653 2234446666777778888877 777888888888888888
Q ss_pred cCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccC
Q 042336 616 LHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDK 695 (944)
Q Consensus 616 Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~ 695 (944)
.+++.+.++|++|+.+..|+.|+..+|+ +..+|.++.++.+|..|++.+|.+..+|+..-+++.|++|+ .. .+.
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld----~~-~N~ 194 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD----CN-SNL 194 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc----cc-hhh
Confidence 8888888888888888888888887776 77888888888888888887777777777766677777776 22 223
Q ss_pred CCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhc
Q 042336 696 YGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICE 775 (944)
Q Consensus 696 ~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (944)
.+..|..++.+.+|..|. +.-..+ ...+.+..++.|..|+++.|++... -.+
T Consensus 195 L~tlP~~lg~l~~L~~Ly--L~~Nki--------~~lPef~gcs~L~Elh~g~N~i~~l------------------pae 246 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLY--LRRNKI--------RFLPEFPGCSLLKELHVGENQIEML------------------PAE 246 (565)
T ss_pred hhcCChhhcchhhhHHHH--hhhccc--------ccCCCCCccHHHHHHHhcccHHHhh------------------HHH
Confidence 333555666666554331 111111 1123455566666666666533211 123
Q ss_pred cCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccc
Q 042336 776 ALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 776 ~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 838 (944)
.+..+++|..|++++|...++|..+..+.+|.+|++++|....-.+.+|++ +|+.|.+.|++
T Consensus 247 ~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 445677888888888888888888888888888888887766555558888 88888887754
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.3e-20 Score=190.79 Aligned_cols=356 Identities=19% Similarity=0.209 Sum_probs=193.8
Q ss_pred EEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceec
Q 042336 536 SMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFK 615 (944)
Q Consensus 536 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~ 615 (944)
+.++.+.....|+.+.....+..+.++.+.. ..++.-+.....|+.|+.+.+. +.++|++|+.+..|..|+
T Consensus 73 l~~~~n~l~~lp~aig~l~~l~~l~vs~n~l-----s~lp~~i~s~~~l~~l~~s~n~----~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 73 LNVHDNKLSQLPAAIGELEALKSLNVSHNKL-----SELPEQIGSLISLVKLDCSSNE----LKELPDSIGRLLDLEDLD 143 (565)
T ss_pred EEeccchhhhCCHHHHHHHHHHHhhcccchH-----hhccHHHhhhhhhhhhhccccc----eeecCchHHHHhhhhhhh
Confidence 3344444444666666666677776666542 2234445666667777777666 666777777777777777
Q ss_pred cCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccC
Q 042336 616 LHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDK 695 (944)
Q Consensus 616 Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~ 695 (944)
..+|.+..+|+.++++.+|-.|++.++. +..+|+....++.|+|||...|.++.+|+.++.+.+|..|+ ...|..
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly----L~~Nki 218 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY----LRRNKI 218 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH----hhhccc
Confidence 7777777777777777777777777766 66666666556677777666666666666666666665554 222111
Q ss_pred CCCcccccccCcCcccCCc-----------------eEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhh
Q 042336 696 YGNKACNLGGLRQLNHLRG-----------------SLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEE 758 (944)
Q Consensus 696 ~~~~~~~l~~l~~L~~L~~-----------------~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 758 (944)
.. .| .+..|..|+.+.. ++-+-.+.. +.-......++.+++|..|+++.|.++...|..
T Consensus 219 ~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd--Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 219 RF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD--NKLKEVPDEICLLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred cc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc--cccccCchHHHHhhhhhhhcccCCccccCCccc
Confidence 11 11 2222222221110 111111111 001112235566788999999999877665432
Q ss_pred hhh-------------------hc-------------------CCC-cccHH--HHhccC----CCCCC-----------
Q 042336 759 EEV-------------------TE-------------------GKN-EVSHE--AICEAL----RPPPN----------- 782 (944)
Q Consensus 759 ~~~-------------------~~-------------------~~~-~~~~~--~~~~~l----~~~~~----------- 782 (944)
... +. +.. ..... ...... ....+
T Consensus 295 gnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 295 GNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL 374 (565)
T ss_pred ccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence 100 00 000 00000 000000 00012
Q ss_pred ---------------CceEEEeeCCCCCCC------------------------hhhhcCCCccEEEeeccCCCCcCCCC
Q 042336 783 ---------------LESLDVWKYRGETLP------------------------SWIMSLNKLKKLELSFCNKFEIMPPL 823 (944)
Q Consensus 783 ---------------L~~L~l~~~~~~~lp------------------------~~~~~l~~L~~L~L~~~~~~~~l~~l 823 (944)
.+..++++|....+| ..+..+++|..|+|++|...+....+
T Consensus 375 t~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~ 454 (565)
T KOG0472|consen 375 TLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM 454 (565)
T ss_pred ccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhh
Confidence 233444444333333 22234566666666665444322235
Q ss_pred CCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCC
Q 042336 824 GKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQI 903 (944)
Q Consensus 824 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 903 (944)
+.+-.|+.|+++.+. +...+..+-.++.|+..-.+++......+..+..|.+|..|++.+|. +..+|..+
T Consensus 455 ~~lv~Lq~LnlS~Nr---------Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~L 524 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNR---------FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPIL 524 (565)
T ss_pred hhhhhhheecccccc---------cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChhh
Confidence 666666666665432 11112222233444444444444444444457789999999999885 78899999
Q ss_pred CCCCCcCeEEEecCcc
Q 042336 904 LGNTTLQMLKIYNCRI 919 (944)
Q Consensus 904 ~~l~~L~~L~l~~c~~ 919 (944)
+++.+|++|+++|||.
T Consensus 525 gnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 525 GNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccceeEEEecCCcc
Confidence 9999999999999997
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=3.2e-17 Score=206.04 Aligned_cols=300 Identities=22% Similarity=0.311 Sum_probs=190.7
Q ss_pred CCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCccc-ccccCccccCCC
Q 042336 554 KKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLE-IKELPDTCCELF 632 (944)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~-i~~lP~~i~~L~ 632 (944)
++||.|.+.+++... ++..| .+.+|+.|++.++. +..+|..+..+++|++|+|+++. +..+| .++.++
T Consensus 589 ~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~----l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~ 657 (1153)
T PLN03210 589 PKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSK----LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMAT 657 (1153)
T ss_pred cccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCcc----ccccccccccCCCCCEEECCCCCCcCcCC-ccccCC
Confidence 468888888876422 33323 45788888888887 77788888888888888888765 66777 478888
Q ss_pred cccEEEecCccCCcccCcccccCCCCceeec-cccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCc--
Q 042336 633 NLQTIEIEGCYNLNRLPQGVGKLVNLRHLIF-DVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQL-- 709 (944)
Q Consensus 633 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l-~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L-- 709 (944)
+|++|++++|..+..+|..+++|++|++|++ +|+.+..+|.++ ++++|+.|. ..++......+....++..|
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~----Lsgc~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN----LSGCSRLKSFPDISTNISWLDL 732 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe----CCCCCCccccccccCCcCeeec
Confidence 8888888888888888888888888888888 455777788766 567777765 22221111111111111111
Q ss_pred --------------ccCCceEEEcCccC--cCC-hhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHH
Q 042336 710 --------------NHLRGSLRIRGLRN--VTD-VHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEA 772 (944)
Q Consensus 710 --------------~~L~~~l~i~~l~~--~~~-~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (944)
.+|. .|.+..+.. +.. ............++|+.|+++.|.... .
T Consensus 733 ~~n~i~~lP~~~~l~~L~-~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~------------------~ 793 (1153)
T PLN03210 733 DETAIEEFPSNLRLENLD-ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV------------------E 793 (1153)
T ss_pred CCCccccccccccccccc-cccccccchhhccccccccchhhhhccccchheeCCCCCCcc------------------c
Confidence 0010 011110000 000 000000001123456666666553221 2
Q ss_pred HhccCCCCCCCceEEEeeCC-CCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCccccCcc
Q 042336 773 ICEALRPPPNLESLDVWKYR-GETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIE 851 (944)
Q Consensus 773 ~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 851 (944)
++..+..+++|+.|+|++|. ...+|..+ .+++|+.|+|++|..+..+|.+ .++|+.|+|.++. ++.++..
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s----- 864 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW----- 864 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH-----
Confidence 45567788999999999875 56678765 6899999999999888777654 4689999998753 3333221
Q ss_pred CccCccccccccccccccccccccCCccccCcccceeeecccccccCCC
Q 042336 852 IVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLP 900 (944)
Q Consensus 852 ~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 900 (944)
...+++|+.|.+.+|.++..+.. .+..+++|+.|++++|+.+..++
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~---~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSL---NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCc---ccccccCCCeeecCCCccccccc
Confidence 13577777777777766655433 35578999999999999887553
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=7e-18 Score=188.71 Aligned_cols=280 Identities=26% Similarity=0.348 Sum_probs=168.3
Q ss_pred CCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccc
Q 042336 542 NEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEI 621 (944)
Q Consensus 542 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i 621 (944)
....+|..+.....+..|.+..+.... .. ++. ..+.-.|++||+++|. +..+|..|..+.+|+.|+++.|.|
T Consensus 9 ~l~~ip~~i~~~~~~~~ln~~~N~~l~--~p-l~~-~~~~v~L~~l~lsnn~----~~~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 9 QLELIPEQILNNEALQILNLRRNSLLS--RP-LEF-VEKRVKLKSLDLSNNQ----ISSFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cCcccchhhccHHHHHhhhcccccccc--Cc-hHH-hhheeeeEEeeccccc----cccCCchhhhHHHHhhcccchhhH
Confidence 333456666555567777777654321 11 233 3344449999999998 888999999999999999999999
Q ss_pred cccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCccc
Q 042336 622 KELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKAC 701 (944)
Q Consensus 622 ~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~ 701 (944)
..+|.+++++.+|++|+|.+|. +..+|.++..+++|+.|+++.|.+..+|.-+..++.+..+. ..+|......+.
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~----~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELA----ASNNEKIQRLGQ 155 (1081)
T ss_pred hhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHh----hhcchhhhhhcc
Confidence 9999999999999999999987 89999999999999999999998888887666665554443 111110000000
Q ss_pred ccccCcC--cccCCceE--EEcCccCcCCh-h-hhhhhhcccCCCcCcEEEEeecCCCCchhhh---hhhcCCCcccHHH
Q 042336 702 NLGGLRQ--LNHLRGSL--RIRGLRNVTDV-H-EAKIVELEKKKNLLHLSLSFVKRTDEEDEEE---EVTEGKNEVSHEA 772 (944)
Q Consensus 702 ~l~~l~~--L~~L~~~l--~i~~l~~~~~~-~-~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~---~~~~~~~~~~~~~ 772 (944)
.--..-. ++.+.+.+ .+..+...-++ . ......+..+.+|+.|....+++....+... ......+...
T Consensus 156 ~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~--- 232 (1081)
T KOG0618|consen 156 TSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT--- 232 (1081)
T ss_pred ccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce---
Confidence 0000000 00111010 00011000000 0 0002344455555555555554332211000 0000000000
Q ss_pred HhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCC----------------------CcCCC-CCCCCCc
Q 042336 773 ICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKF----------------------EIMPP-LGKLPSL 829 (944)
Q Consensus 773 ~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~----------------------~~l~~-l~~l~~L 829 (944)
....-..+.+|+.++++.+....+|.|+..+.+|+.|....|... +.+|+ ++++.+|
T Consensus 233 ~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL 312 (1081)
T KOG0618|consen 233 TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSL 312 (1081)
T ss_pred eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccccccee
Confidence 112223457899999999988889999999999999888877532 12333 5568888
Q ss_pred ceeeeccc
Q 042336 830 ELLEVFAL 837 (944)
Q Consensus 830 ~~L~L~~~ 837 (944)
++|+|..+
T Consensus 313 ~tLdL~~N 320 (1081)
T KOG0618|consen 313 RTLDLQSN 320 (1081)
T ss_pred eeeeehhc
Confidence 88888754
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=2.1e-12 Score=162.16 Aligned_cols=291 Identities=16% Similarity=0.207 Sum_probs=184.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeC-CCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVS-DPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i 251 (944)
+.+|-|..-.+.+-+ ....+++.|+|++|.||||++..+... ++.++|+++. .+.++..+...+
T Consensus 14 ~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 456666655444422 125689999999999999999998852 2368999996 455777777888
Q ss_pred HHHhhCCCCC-------------CCCHHHHHHHHHHHhc--CCceEEEeCCCCccCccChh-hhHhhhccCCCCcEEEEE
Q 042336 252 IEALEGSAPN-------------LGELNSLLQHICLSIT--GKKFLLVLDDVWTEDYSKWE-PFHNCLMNCLHGSKILVT 315 (944)
Q Consensus 252 ~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~iivT 315 (944)
+..+....+. ..+.......+...+. +.+++|||||+...+..... .+...++....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 8777522111 0122233333333332 68999999999654433434 344444445567789899
Q ss_pred ccchhhh---hcccccceEeCC----CCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcC
Q 042336 316 TRKETVA---RMMESIDILIIK----ELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRF 388 (944)
Q Consensus 316 tr~~~v~---~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~ 388 (944)
||...-. ..........+. +|+.+|+.++|.......- -.+...+|++.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9974221 111112345555 9999999999987643221 1455678999999999999998877654
Q ss_pred CCC-HHHHHHHHhhhhhhhhh-hccchhhHHH-hhhhcChHHHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccCCCc
Q 042336 389 KRT-TEEWQNILDSEMWQLEE-FEKDLLAPLL-LSYTDLPSRIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKGNK 465 (944)
Q Consensus 389 ~~~-~~~w~~~~~~~~~~~~~-~~~~i~~~l~-~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~ 465 (944)
... .... . +.+.. ....+...+. -.++.||++.+..+...|+++ .|+.+.+-... |
T Consensus 232 ~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~-------- 290 (903)
T PRK04841 232 NNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G-------- 290 (903)
T ss_pred CCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C--------
Confidence 322 1110 0 11111 1123444433 348899999999999999996 44433322221 1
Q ss_pred hHHHHHHHHHHHHHhccCCcc-cccccCeEEechHHHHHHHHhh
Q 042336 466 EMEMIGEEYFDYLATRSFFQE-FVEVDIIYKMHDIVHDFAQFLT 508 (944)
Q Consensus 466 ~~e~~~~~~~~~L~~~~li~~-~~~~~~~~~mH~lv~~~~~~~~ 508 (944)
.+.+...+++|.+++++.. .+..+..|+.|++++++.+...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1234678999999999753 3333456889999999987754
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.49 E-value=1.1e-15 Score=171.38 Aligned_cols=349 Identities=20% Similarity=0.214 Sum_probs=164.5
Q ss_pred eEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccc
Q 042336 533 LRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLR 612 (944)
Q Consensus 533 ~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr 612 (944)
...+.+..+....+|..+....+|+.|.++.+.+. ..+....++.+|++|.|.+|. ...+|.++..+++|.
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-----~vp~s~~~~~~l~~lnL~~n~----l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-----SVPSSCSNMRNLQYLNLKNNR----LQSLPASISELKNLQ 117 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh-----hCchhhhhhhcchhheeccch----hhcCchhHHhhhccc
Confidence 34445555555556666666666666666665432 123335566666666666666 566666666666666
Q ss_pred eeccCcccccccCccccCC----------------------------------------CcccE-EEecCccCC------
Q 042336 613 YFKLHWLEIKELPDTCCEL----------------------------------------FNLQT-IEIEGCYNL------ 645 (944)
Q Consensus 613 ~L~Ls~~~i~~lP~~i~~L----------------------------------------~~L~~-L~L~~~~~l------ 645 (944)
||++|+|.+...|.-|..+ .+|++ |||+.|..+
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN 197 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence 6666666544444222111 12222 444443311
Q ss_pred ----cccCcc-----------------------------cccCCCCceeeccccccccccccccCCCCCCcCCceEeccc
Q 042336 646 ----NRLPQG-----------------------------VGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSR 692 (944)
Q Consensus 646 ----~~lp~~-----------------------------i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~ 692 (944)
..+-.. ...-.+|++++++.+.+..+|.+++.+.+|..+. ...
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~----~n~ 273 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALN----ANH 273 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEec----ccc
Confidence 000000 0012345555556666677787788888887776 333
Q ss_pred ccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcC-CCcccH-
Q 042336 693 SDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEG-KNEVSH- 770 (944)
Q Consensus 693 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~~~~- 770 (944)
|.. ...+..+....+|..| ......++.+ ...+...++|++|+|..|++....+.+...... .+....
T Consensus 274 N~l-~~lp~ri~~~~~L~~l--~~~~nel~yi-------p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 274 NRL-VALPLRISRITSLVSL--SAAYNELEYI-------PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred hhH-HhhHHHHhhhhhHHHH--HhhhhhhhhC-------CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh
Confidence 322 1122233333333322 1222222222 134455677788888777665443322111100 000000
Q ss_pred HHHhc---cC--CCCCCCceEEEeeCCCC-CCChhhhcCCCccEEEeeccCCCCcCCC--CCCCCCcceeeecccccceE
Q 042336 771 EAICE---AL--RPPPNLESLDVWKYRGE-TLPSWIMSLNKLKKLELSFCNKFEIMPP--LGKLPSLELLEVFALQSVKR 842 (944)
Q Consensus 771 ~~~~~---~l--~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~ 842 (944)
....+ .. ..++.|+.|.+.+|..+ ..-+-+.++.+|+.|+|++|.... +|. +.+++.|++|.|+++. ++.
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNk-L~~ 421 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNK-LTT 421 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccch-hhh
Confidence 00000 00 11234666666666532 222334466677777777665432 333 5666677777776654 333
Q ss_pred eCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccC--CCCCCCCCCCcCeEEEecCc
Q 042336 843 VGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKS--LPHQILGNTTLQMLKIYNCR 918 (944)
Q Consensus 843 ~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~ 918 (944)
++.. ...+..|..+.+.++....+ | .+..+|.|+.++++.|. |+. +|..... ++|++|+++||.
T Consensus 422 Lp~t--------va~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 422 LPDT--------VANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNN-LSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhHH--------HHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccch-hhhhhhhhhCCC-cccceeeccCCc
Confidence 3221 11222233333333332222 2 24456667777766543 332 2322211 567777777766
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=1.7e-12 Score=151.34 Aligned_cols=256 Identities=19% Similarity=0.141 Sum_probs=143.5
Q ss_pred cccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceee
Q 042336 583 CLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLI 662 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 662 (944)
.-.+|+|+++. +..+|..+.. +|+.|++++|.++.+|.. +++|++|++++|. +..+|.. .++|++|+
T Consensus 202 ~~~~LdLs~~~----LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESG----LTTLPDCLPA--HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCC----CCcCCcchhc--CCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceee
Confidence 45667777776 6677776653 677788887777777753 4677788887775 6677653 35677777
Q ss_pred ccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcC
Q 042336 663 FDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLL 742 (944)
Q Consensus 663 l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 742 (944)
++.|.+..+|... ++|+.|. ...|.... .+.. +.+|+.| .+.-..+..+.. ...+|+
T Consensus 269 Ls~N~L~~Lp~lp---~~L~~L~----Ls~N~Lt~-LP~~---p~~L~~L--dLS~N~L~~Lp~----------lp~~L~ 325 (788)
T PRK15387 269 IFSNPLTHLPALP---SGLCKLW----IFGNQLTS-LPVL---PPGLQEL--SVSDNQLASLPA----------LPSELC 325 (788)
T ss_pred ccCCchhhhhhch---hhcCEEE----CcCCcccc-cccc---cccccee--ECCCCccccCCC----------Cccccc
Confidence 7777666666432 3344443 22222111 1111 1122222 111111111110 012456
Q ss_pred cEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC
Q 042336 743 HLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP 822 (944)
Q Consensus 743 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 822 (944)
.|.++.|.+... +. .+.+|+.|+|++|....+|.. .++|+.|++++|... .+|.
T Consensus 326 ~L~Ls~N~L~~L-------------------P~---lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~ 379 (788)
T PRK15387 326 KLWAYNNQLTSL-------------------PT---LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA 379 (788)
T ss_pred ccccccCccccc-------------------cc---cccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCcc
Confidence 666666543321 11 124788888888877777753 356777777776544 3554
Q ss_pred CCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCC
Q 042336 823 LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQ 902 (944)
Q Consensus 823 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 902 (944)
+ .++|+.|+++++. +..++ ...++|+.| +++++... ..|. .+.+|+.|++++|. ++.+|..
T Consensus 380 l--~~~L~~LdLs~N~-Lt~LP--------~l~s~L~~L---dLS~N~Ls-sIP~---l~~~L~~L~Ls~Nq-Lt~LP~s 440 (788)
T PRK15387 380 L--PSGLKELIVSGNR-LTSLP--------VLPSELKEL---MVSGNRLT-SLPM---LPSGLLSLSVYRNQ-LTRLPES 440 (788)
T ss_pred c--ccccceEEecCCc-ccCCC--------CcccCCCEE---EccCCcCC-CCCc---chhhhhhhhhccCc-ccccChH
Confidence 3 3467788877654 22111 122344444 44444322 2332 23567888888774 6778888
Q ss_pred CCCCCCcCeEEEecCcc
Q 042336 903 ILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 903 ~~~l~~L~~L~l~~c~~ 919 (944)
+.++++|+.|++++|+.
T Consensus 441 l~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 441 LIHLSSETTVNLEGNPL 457 (788)
T ss_pred HhhccCCCeEECCCCCC
Confidence 88888888888888876
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=3.9e-13 Score=160.22 Aligned_cols=254 Identities=24% Similarity=0.279 Sum_probs=167.4
Q ss_pred ccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccch-hhhcccccceeccCccc-ccccCcc
Q 042336 550 MFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPK-EIQKLIHLRYFKLHWLE-IKELPDT 627 (944)
Q Consensus 550 ~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~-i~~lP~~ 627 (944)
..+...+|...+.++.... +.. -..++.|++|-+.++.. .+..++. .+..+++||+|||++|. +.+||++
T Consensus 519 ~~~~~~~rr~s~~~~~~~~-----~~~-~~~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH-----IAG-SSENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred ccchhheeEEEEeccchhh-----ccC-CCCCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 4456788888888765322 111 24556899999998852 1344443 47789999999999876 7799999
Q ss_pred ccCCCcccEEEecCccCCcccCcccccCCCCceeeccccc-cccccccccCCCCCCcCCceEecccccCCCCcccccccC
Q 042336 628 CCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNF-VEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGL 706 (944)
Q Consensus 628 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l 706 (944)
|++|.+||+|+++++. +..+|.++++|++|.||++..+. +..+|..+..|++|++|..+... .......++++
T Consensus 591 I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-----~~~~~~~l~el 664 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-----LSNDKLLLKEL 664 (889)
T ss_pred HhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-----cccchhhHHhh
Confidence 9999999999999998 99999999999999999996553 33444445569999999865433 11133445555
Q ss_pred cCcccCCceEEEcCccCcCChhhhhhhhcccCCCcC----cEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCC
Q 042336 707 RQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLL----HLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPN 782 (944)
Q Consensus 707 ~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 782 (944)
.+|+.|. .+.+..... .....+..+..|. .+.+.++. .......+..+.+
T Consensus 665 ~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~-------------------~~~~~~~~~~l~~ 718 (889)
T KOG4658|consen 665 ENLEHLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCS-------------------KRTLISSLGSLGN 718 (889)
T ss_pred hcccchh-hheeecchh------HhHhhhhhhHHHHHHhHhhhhcccc-------------------cceeecccccccC
Confidence 5555554 333321111 0111222223333 22221110 1123456677889
Q ss_pred CceEEEeeCCCCCCC-hhhh-----c-CCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEe
Q 042336 783 LESLDVWKYRGETLP-SWIM-----S-LNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRV 843 (944)
Q Consensus 783 L~~L~l~~~~~~~lp-~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 843 (944)
|+.|.|.++.+.... .|.. . ++++..+.+.+|.....+.+....|+|+.|.+..|..++.+
T Consensus 719 L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 999999998864322 2321 2 56778888888887777777667899999999988865544
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=5.4e-10 Score=125.59 Aligned_cols=303 Identities=14% Similarity=0.101 Sum_probs=176.0
Q ss_pred cCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH
Q 042336 171 NVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
.+..++||++++++|...+..... ......+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 446799999999999999854321 123455789999999999999999985322222234667777777788899999
Q ss_pred HHHHhhCC-CC-CCCCHHHHHHHHHHHhc--CCceEEEeCCCCccC-ccChhhhHhhhcc--CCCCcE--EEEEccchhh
Q 042336 251 IIEALEGS-AP-NLGELNSLLQHICLSIT--GKKFLLVLDDVWTED-YSKWEPFHNCLMN--CLHGSK--ILVTTRKETV 321 (944)
Q Consensus 251 i~~~l~~~-~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~-~~~~~~l~~~l~~--~~~gs~--iivTtr~~~v 321 (944)
+++++... .+ ...+.++....+.+.+. +++.+||||+++.-. ....+.+...+.. ...+++ +|.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 99999762 22 22345666677776664 456899999996532 1122333333221 112333 5666655433
Q ss_pred hhccc-------ccceEeCCCCChHHHHHHHHHHhcCC--CCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhh--c--C
Q 042336 322 ARMME-------SIDILIIKELSELECWSLFKRFAFFG--RSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLL--R--F 388 (944)
Q Consensus 322 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l--~--~ 388 (944)
..... ....+.+.+++.++..+++..++... ........++.+++......|..+.|+..+-.+. + .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22211 12467899999999999998876322 1112223333333333333455667766654322 1 1
Q ss_pred -CC--CHHHHHHHHhhhhhhhhhhccchhhHHHhhhhcChHHHHHHHhHhcccCC--CceecHHHHHHH--HHHcCCccc
Q 042336 389 -KR--TTEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPSRIKRCFLYCAVFPK--NYNIKKDELIKL--WAAQGCIGT 461 (944)
Q Consensus 389 -~~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~--~~~i~~~~li~~--w~aeg~i~~ 461 (944)
.. +.+....+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-..
T Consensus 266 ~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred CCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 11 344444443321 1123345678999988876665543321 123455554432 222211100
Q ss_pred CCCchHHHHHHHHHHHHHhccCCcccc
Q 042336 462 KGNKEMEMIGEEYFDYLATRSFFQEFV 488 (944)
Q Consensus 462 ~~~~~~e~~~~~~~~~L~~~~li~~~~ 488 (944)
.-.......|+.+|...++|+...
T Consensus 336 ---~~~~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 336 ---PRTHTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred ---cCcHHHHHHHHHHHHhcCCeEEEE
Confidence 001234566999999999998654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=5.8e-14 Score=126.35 Aligned_cols=128 Identities=24% Similarity=0.336 Sum_probs=108.6
Q ss_pred hccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccc
Q 042336 549 FMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTC 628 (944)
Q Consensus 549 ~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i 628 (944)
.+.++++...|.++++.... .+.-+..+.+|.+|++.+|. +.++|.+|+.++.||.|++.-|.+..+|..+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnq----ie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQ----IEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cccchhhhhhhhcccCceee-----cCCcHHHhhhhhhhhcccch----hhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 45567777888888876433 22226788899999999998 8999999999999999999999999999999
Q ss_pred cCCCcccEEEecCccC-CcccCcccccCCCCceeeccccccccccccccCCCCCCcCC
Q 042336 629 CELFNLQTIEIEGCYN-LNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 629 ~~L~~L~~L~L~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
|.++-|+.|||.+|.. -..+|..+..++.|+-|+++.|.++.+|..++++++||.|.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILS 156 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEe
Confidence 9999999999998762 24689889899999999999999999999999999999886
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=9.3e-12 Score=145.18 Aligned_cols=256 Identities=18% Similarity=0.130 Sum_probs=155.6
Q ss_pred EEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceec
Q 042336 536 SMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFK 615 (944)
Q Consensus 536 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~ 615 (944)
+.+..+++..+|..+. ++|+.|.+.++.... ++. ..++|++|+|++|. +..+|.. ..+|+.|+
T Consensus 206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~----LtsLP~l---p~sL~~L~ 268 (788)
T PRK15387 206 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQ----LTSLPVL---PPGLLELS 268 (788)
T ss_pred EEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCc----cCcccCc---ccccceee
Confidence 3444444544555443 478888888765321 222 34788899998887 6667643 35788888
Q ss_pred cCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccC
Q 042336 616 LHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDK 695 (944)
Q Consensus 616 Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~ 695 (944)
+++|.+..+|... .+|+.|++++|. +..+|.. +++|++|+++.|.+..+|.... +|+.|. ...|.
T Consensus 269 Ls~N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~----Ls~N~- 333 (788)
T PRK15387 269 IFSNPLTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALPS---ELCKLW----AYNNQ- 333 (788)
T ss_pred ccCCchhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCCcc---cccccc----cccCc-
Confidence 8888888877643 567788888886 7778763 4678888988888877775332 344443 11110
Q ss_pred CCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhc
Q 042336 696 YGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICE 775 (944)
Q Consensus 696 ~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (944)
+..++ . + ..+|+.|+|+.|++... +.
T Consensus 334 -------L~~LP------------------~--------l--p~~Lq~LdLS~N~Ls~L-------------------P~ 359 (788)
T PRK15387 334 -------LTSLP------------------T--------L--PSGLQELSVSDNQLASL-------------------PT 359 (788)
T ss_pred -------ccccc------------------c--------c--ccccceEecCCCccCCC-------------------CC
Confidence 10000 0 0 13577788877754431 11
Q ss_pred cCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCccccCccCccC
Q 042336 776 ALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAF 855 (944)
Q Consensus 776 ~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f 855 (944)
-+++|+.|++++|....+|.. ..+|+.|+|++|... .+|.. .++|+.|+++++. +..++ ..+
T Consensus 360 ---lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l--~s~L~~LdLS~N~-LssIP--------~l~ 421 (788)
T PRK15387 360 ---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL--PSELKELMVSGNR-LTSLP--------MLP 421 (788)
T ss_pred ---CCcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc--ccCCCEEEccCCc-CCCCC--------cch
Confidence 135677788887776667753 356888888887654 34432 3578888887764 22111 112
Q ss_pred ccccccccccccccccccccCCccccCcccceeeecccccccCC
Q 042336 856 PKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSL 899 (944)
Q Consensus 856 ~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 899 (944)
.+|+. +++.++. +...|..+..+++|+.|+|++|+.-...
T Consensus 422 ~~L~~---L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 422 SGLLS---LSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hhhhh---hhhccCc-ccccChHHhhccCCCeEECCCCCCCchH
Confidence 23333 4444443 2345555667889999999998764443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=3.8e-12 Score=149.49 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=30.6
Q ss_pred CCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccc
Q 042336 781 PNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 781 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 838 (944)
++|+.|.+++|....+|..+ +++|+.|+|++|... .+|. .-.++|+.|+|++|.
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~-~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQIT-VLPE-TLPPTITTLDVSRNA 378 (754)
T ss_pred ccceeccccCCccccCChhh--cCcccEEECCCCCCC-cCCh-hhcCCcCEEECCCCc
Confidence 46667777666666666544 356777777766543 2332 112466666666543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=8.7e-14 Score=125.23 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=35.6
Q ss_pred hccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCC
Q 042336 774 CEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGK 825 (944)
Q Consensus 774 ~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 825 (944)
+...+.+.+|+-|.+..|..-++|..++.++.|+.|++.+|...-..|.+++
T Consensus 143 p~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred ChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 4445566677777777777777888888888888888888765443333443
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=1.3e-11 Score=145.10 Aligned_cols=218 Identities=21% Similarity=0.279 Sum_probs=146.3
Q ss_pred EEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccce
Q 042336 534 RHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRY 613 (944)
Q Consensus 534 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~ 613 (944)
..+.+...+...+|..+ .++|+.|++.++.... ++..+ +++|++|++++|. +..+|..+. .+|+.
T Consensus 181 ~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lts-----LP~~l--~~nL~~L~Ls~N~----LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 181 TELRLKILGLTTIPACI--PEQITTLILDNNELKS-----LPENL--QGNIKTLYANSNQ----LTSIPATLP--DTIQE 245 (754)
T ss_pred eEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCc-----CChhh--ccCCCEEECCCCc----cccCChhhh--ccccE
Confidence 34555555555555544 3578889988876432 22222 2589999999887 677887654 47899
Q ss_pred eccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccc
Q 042336 614 FKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRS 693 (944)
Q Consensus 614 L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~ 693 (944)
|+|++|.+..+|..+. .+|++|++++|. +..+|..+. ++|++|++++|.+..+|..+. ++|+.|. ...|
T Consensus 246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~----Ls~N 314 (754)
T PRK15370 246 MELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLN----VQSN 314 (754)
T ss_pred EECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHH----hcCC
Confidence 9999999988888765 479999998876 778887664 589999998888887776543 3455544 1111
Q ss_pred cCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHH
Q 042336 694 DKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAI 773 (944)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (944)
. |..+ . ..+ .++|+.|.++.|.+...
T Consensus 315 ~--------------Lt~L------------P-------~~l--~~sL~~L~Ls~N~Lt~L------------------- 340 (754)
T PRK15370 315 S--------------LTAL------------P-------ETL--PPGLKTLEAGENALTSL------------------- 340 (754)
T ss_pred c--------------cccC------------C-------ccc--cccceeccccCCccccC-------------------
Confidence 0 0000 0 001 14688888888754431
Q ss_pred hccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccc
Q 042336 774 CEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQ 838 (944)
Q Consensus 774 ~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 838 (944)
+..+ +++|+.|++++|....+|..+ .++|+.|+|++|.... +|. +. ++|+.|+++++.
T Consensus 341 P~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 341 PASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNN 399 (754)
T ss_pred Chhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCC
Confidence 2222 368999999999988888765 4789999999997654 443 32 368888888754
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.24 E-value=4.6e-10 Score=119.01 Aligned_cols=182 Identities=16% Similarity=0.089 Sum_probs=117.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-----
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL----- 274 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----- 274 (944)
..++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..+...++.+... .+.......+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 457899999999999999999985331 111 12233 334567788999999888765432 222223333332
Q ss_pred HhcCCceEEEeCCCCccCccChhhhHhhhccC---CCCcEEEEEccchhhhhccc----------ccceEeCCCCChHHH
Q 042336 275 SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNC---LHGSKILVTTRKETVARMME----------SIDILIIKELSELEC 341 (944)
Q Consensus 275 ~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~---~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~~~ 341 (944)
...+++.++|+||+|.-+...++.+....... .....|++|.... ....+. ....+.+.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 23678899999999876655666665432211 2223456665432 211111 134678999999999
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhh
Q 042336 342 WSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLL 386 (944)
Q Consensus 342 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l 386 (944)
.+++...+..........-.++..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988764332211112335788999999999999999988776
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=8.2e-09 Score=114.77 Aligned_cols=301 Identities=13% Similarity=0.111 Sum_probs=172.4
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc-ccC---ceeEEEEeCCCCCHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI-NNF---EKRIWVSVSDPFDEYRV 247 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~ 247 (944)
+..++||++++++|...+..... ......+.|+|++|+|||++++.++++.... ... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 34799999999999999864221 1234568999999999999999999842110 111 24578888887788899
Q ss_pred HHHHHHHhh---CCCC-CCCCHHHHHHHHHHHh--cCCceEEEeCCCCccCccChhh-hHhhhcc----CC--CCcEEEE
Q 042336 248 AKAIIEALE---GSAP-NLGELNSLLQHICLSI--TGKKFLLVLDDVWTEDYSKWEP-FHNCLMN----CL--HGSKILV 314 (944)
Q Consensus 248 ~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~-l~~~l~~----~~--~gs~iiv 314 (944)
+..|++++. ...+ ...+..+....+.+.+ .+++++||||+++.-. ...+. +...+.. .. ....+|.
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 999999994 2222 1223445555565555 3568899999996531 11122 2222221 11 2234455
Q ss_pred Eccchhhhhccc-------ccceEeCCCCChHHHHHHHHHHhcCC-CCCCCchhHHHHHHHHHHhhCCChhhHHHHhhh-
Q 042336 315 TTRKETVARMME-------SIDILIIKELSELECWSLFKRFAFFG-RSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSL- 385 (944)
Q Consensus 315 Ttr~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~- 385 (944)
+|........+. ....+.+.+.+.++..+++..++-.. ......++..+....++....|.|..+..+...
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554333221111 12468899999999999999886311 111122333344455677778988554332211
Q ss_pred h----cCC---CCHHHHHHHHhhhhhhhhhhccchhhHHHhhhhcChHHHHHHHhHhcccC--CCceecHHHHHHHHH--
Q 042336 386 L----RFK---RTTEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPSRIKRCFLYCAVFP--KNYNIKKDELIKLWA-- 454 (944)
Q Consensus 386 l----~~~---~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~i~~~~li~~w~-- 454 (944)
. ..+ -+.+......+.. -.....-++..||.+.|..+..++..- .+..+....+...+-
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 111 1333333333221 112234566789988887666554221 333455566655331
Q ss_pred HcCCcccCCCchHHHHHHHHHHHHHhccCCcccc
Q 042336 455 AQGCIGTKGNKEMEMIGEEYFDYLATRSFFQEFV 488 (944)
Q Consensus 455 aeg~i~~~~~~~~e~~~~~~~~~L~~~~li~~~~ 488 (944)
++. +... .........++..|...|++....
T Consensus 321 ~~~-~~~~--~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CED-IGVD--PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHh-cCCC--CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 221 1111 123466778899999999998654
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.13 E-value=1.2e-08 Score=115.71 Aligned_cols=295 Identities=20% Similarity=0.232 Sum_probs=192.0
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAII 252 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~ 252 (944)
..|-|.. +.+.|... ...+.+.|..++|.|||||+..... ....=..++|.++++ +.++..++.-++
T Consensus 20 ~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 20 NYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred cccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHH
Confidence 4455544 55555422 3679999999999999999999875 112235789999864 568889999999
Q ss_pred HHhhCCCCCC-------------CCHHHHHHHHHHHh--cCCceEEEeCCCCccCccChhh-hHhhhccCCCCcEEEEEc
Q 042336 253 EALEGSAPNL-------------GELNSLLQHICLSI--TGKKFLLVLDDVWTEDYSKWEP-FHNCLMNCLHGSKILVTT 316 (944)
Q Consensus 253 ~~l~~~~~~~-------------~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~-l~~~l~~~~~gs~iivTt 316 (944)
..++.-.++. .++..+...+..-+ -.++..+||||..-........ +...+.....+-.+||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 9887543322 22333444444433 2568999999985433233333 555556667788999999
Q ss_pred cchhhhhc---ccccceEeC----CCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCC
Q 042336 317 RKETVARM---MESIDILII----KELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFK 389 (944)
Q Consensus 317 r~~~v~~~---~~~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~ 389 (944)
|+..-... --....+++ -.++.+|+-++|.......- + +.-.+.+.+..+|=+-|+..++-.++.+
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L---d----~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL---D----AADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC---C----hHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 98753222 111223333 35889999999988742221 2 4456789999999999999998888744
Q ss_pred CCHHHHHHHHhhhhhhhhhhccchh-hHHHhhhhcChHHHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccCCCchHH
Q 042336 390 RTTEEWQNILDSEMWQLEEFEKDLL-APLLLSYTDLPSRIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKEME 468 (944)
Q Consensus 390 ~~~~~w~~~~~~~~~~~~~~~~~i~-~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e 468 (944)
.+.+.-...+.. .+.-+. ....--++.||+++|..++-+|+++. |. +.|+..-. -+
T Consensus 241 ~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~Lt------------g~ 297 (894)
T COG2909 241 TSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNALT------------GE 297 (894)
T ss_pred CcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHHh------------cC
Confidence 444333332221 111111 22335678999999999999999953 22 23333221 13
Q ss_pred HHHHHHHHHHHhccCCc-ccccccCeEEechHHHHHHHHhhcc
Q 042336 469 MIGEEYFDYLATRSFFQ-EFVEVDIIYKMHDIVHDFAQFLTKN 510 (944)
Q Consensus 469 ~~~~~~~~~L~~~~li~-~~~~~~~~~~mH~lv~~~~~~~~~~ 510 (944)
+.+...+++|.+++++- +-+..+.-|+.|.++.||.+..-..
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 45677899999999864 4444466799999999998765443
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.11 E-value=6.3e-10 Score=120.76 Aligned_cols=279 Identities=18% Similarity=0.168 Sum_probs=147.5
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+|+|++..++.+..++..... .......+.|+|++|+||||||+.+++.. ...+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHHH
Confidence 5699999999999888754221 12345678899999999999999999842 2221 112211 111112222233
Q ss_pred HHhhCCCC-CCCCH----HHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhhhccc-
Q 042336 253 EALEGSAP-NLGEL----NSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVARMME- 326 (944)
Q Consensus 253 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 326 (944)
..+..... -..+. ......+...+.+.+..+|+|+..+.. . +...++ +.+-|..||+...+.....
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~---~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--S---IRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--c---eeecCC---CceEEeecCCcccCCHHHHH
Confidence 32221100 00000 011222333334444444454432211 0 000111 2344556666543333221
Q ss_pred -ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCHHHHHHHHhhhhhh
Q 042336 327 -SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTEEWQNILDSEMWQ 405 (944)
Q Consensus 327 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~~~~~~~~ 405 (944)
....+.+.+++.++..+++.+.+........ ++....|++.|+|.|-.+..+...+ ..|........ -
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~~-I 238 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDGV-I 238 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCCC-C
Confidence 1346899999999999999988755433222 5668899999999996555544332 12221111000 0
Q ss_pred hhhhccchhhHHHhhhhcChHHHHHHHh-HhcccCCCceecHHHHHHHHHHcCCcccCCCchHHHHHHHHHH-HHHhccC
Q 042336 406 LEEFEKDLLAPLLLSYTDLPSRIKRCFL-YCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKEMEMIGEEYFD-YLATRSF 483 (944)
Q Consensus 406 ~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~~~-~L~~~~l 483 (944)
....-......+...|..|++..+..+. ....|+.+ .+..+.+.... | ...+.+++.++ .|++.+|
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHcCC
Confidence 0011122334556777888887777775 66677655 46655554332 1 11233444455 7899999
Q ss_pred Cccccc
Q 042336 484 FQEFVE 489 (944)
Q Consensus 484 i~~~~~ 489 (944)
++....
T Consensus 307 i~~~~~ 312 (328)
T PRK00080 307 IQRTPR 312 (328)
T ss_pred cccCCc
Confidence 975543
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=1.5e-09 Score=117.16 Aligned_cols=276 Identities=18% Similarity=0.137 Sum_probs=147.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+|+|++..++.+..++..... .......+.++|++|+|||+||+.+++.. ...| ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCchh-HHHHH
Confidence 4699999999999988854322 12335567899999999999999998842 2222 1122111111111 22222
Q ss_pred HHhhCCCC-CCCCH----HHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhhhccc-
Q 042336 253 EALEGSAP-NLGEL----NSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVARMME- 326 (944)
Q Consensus 253 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 326 (944)
..+..... -..+. ......+...+.+.+..+|+|+..+. ..| ...+ .+.+-|..||+...+.....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 22221110 00000 11223344445555555666655322 111 1111 12455666677644433211
Q ss_pred -ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCHHHHHHH--Hhhhh
Q 042336 327 -SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTEEWQNI--LDSEM 403 (944)
Q Consensus 327 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~--~~~~~ 403 (944)
....+.+.+++.++..+++.+.+........ ++....|++.|+|.|-.+..++..+ |... .+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1346789999999999999988754322222 5567889999999997765554432 1110 00000
Q ss_pred hhhhhhccchhhHHHhhhhcChHHHHHHHh-HhcccCCCceecHHHHHHHHHHcCCcccCCCchHHHHHHHHHH-HHHhc
Q 042336 404 WQLEEFEKDLLAPLLLSYTDLPSRIKRCFL-YCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKEMEMIGEEYFD-YLATR 481 (944)
Q Consensus 404 ~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~~~-~L~~~ 481 (944)
-....-......+...|..++++.+..+. .++.++.+ .+..+.+.... |- ....++..++ .|+++
T Consensus 217 -it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 -INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQI 283 (305)
T ss_pred -cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHc
Confidence 00000111223356678889888777665 55666533 44444433332 11 1234566677 69999
Q ss_pred cCCcccc
Q 042336 482 SFFQEFV 488 (944)
Q Consensus 482 ~li~~~~ 488 (944)
+|+....
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997444
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=3.4e-10 Score=117.55 Aligned_cols=195 Identities=21% Similarity=0.195 Sum_probs=100.2
Q ss_pred cccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH---
Q 042336 175 VRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI--- 251 (944)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--- 251 (944)
|+||+.|+++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+. .+..-..++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~-~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNES-SLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhh-HHHHHHHH
Confidence 789999999999999643 2467889999999999999999983 22211134455444433222 22222
Q ss_pred -------HHHhhCCCC----------CCCCHHHHHHHHHHHh--cCCceEEEeCCCCccC------ccChhhhHhhhcc-
Q 042336 252 -------IEALEGSAP----------NLGELNSLLQHICLSI--TGKKFLLVLDDVWTED------YSKWEPFHNCLMN- 305 (944)
Q Consensus 252 -------~~~l~~~~~----------~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~------~~~~~~l~~~l~~- 305 (944)
.+.+....+ ...........+.+.+ .+++.+||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111211110 0111122223333333 2445999999995432 0111223333333
Q ss_pred -CCCCcEEEEEccchhhhhc--------ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh
Q 042336 306 -CLHGSKILVTTRKETVARM--------MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 306 -~~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 376 (944)
......+|+++.+..+... .+....+.+++|+.+++++++...+-.. . .. +.-++..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCH
Confidence 1233344455444433322 2234469999999999999999865332 1 11 123555689999999999
Q ss_pred hhHHH
Q 042336 377 LAAKT 381 (944)
Q Consensus 377 lai~~ 381 (944)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.98 E-value=5.8e-11 Score=129.80 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=17.8
Q ss_pred CcccceeeecccccccC----CCCCCCCC-CCcCeEEEecCc
Q 042336 882 MPQLNSLEIRDCHKLKS----LPHQILGN-TTLQMLKIYNCR 918 (944)
Q Consensus 882 l~~L~~L~l~~c~~l~~----lp~~~~~l-~~L~~L~l~~c~ 918 (944)
+++|+.|++++|..-.. +...+... +.|++++|.++|
T Consensus 277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 35566666666543321 22122222 456666666554
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=2e-10 Score=125.54 Aligned_cols=244 Identities=19% Similarity=0.148 Sum_probs=136.4
Q ss_pred hhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcc---cccccchhhhcccccceeccCccccc-c
Q 042336 548 VFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKEN---SIYEIPKEIQKLIHLRYFKLHWLEIK-E 623 (944)
Q Consensus 548 ~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~---~~~~lp~~i~~l~~Lr~L~Ls~~~i~-~ 623 (944)
..+....+|+.|.+.++.........+...+...+.|+.|+++++.... ....++..+..+.+|++|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3344556688888887764321223345556677778888888776321 11234456677778888888888765 3
Q ss_pred cCccccCCCc---ccEEEecCccCCc-----ccCcccccC-CCCceeeccccccc-----cccccccCCCCCCcCCceEe
Q 042336 624 LPDTCCELFN---LQTIEIEGCYNLN-----RLPQGVGKL-VNLRHLIFDVNFVE-----YMPKGIERLTCLRTLSEFVV 689 (944)
Q Consensus 624 lP~~i~~L~~---L~~L~L~~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~~~~~ 689 (944)
.+..+..+.+ |++|++++|. +. .++..+..+ ++|+.|+++.|.+. .++..+..+++|++|+
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~---- 171 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN---- 171 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE----
Confidence 4444544444 8888888876 33 233344556 78888888666554 2223334444555543
Q ss_pred cccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCccc
Q 042336 690 VSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVS 769 (944)
Q Consensus 690 ~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 769 (944)
...+...+ .........+...++|+.|+++.|.+.+. .
T Consensus 172 l~~n~l~~----------------------------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~--------------~ 209 (319)
T cd00116 172 LANNGIGD----------------------------AGIRALAEGLKANCNLEVLDLNNNGLTDE--------------G 209 (319)
T ss_pred CcCCCCch----------------------------HHHHHHHHHHHhCCCCCEEeccCCccChH--------------H
Confidence 11110000 00011122344456788888877754322 1
Q ss_pred HHHHhccCCCCCCCceEEEeeCCCCC-CChhhh-c----CCCccEEEeeccCCCC----cC-CCCCCCCCcceeeecccc
Q 042336 770 HEAICEALRPPPNLESLDVWKYRGET-LPSWIM-S----LNKLKKLELSFCNKFE----IM-PPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 770 ~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~~-~----l~~L~~L~L~~~~~~~----~l-~~l~~l~~L~~L~L~~~~ 838 (944)
...+...+..+++|+.|++++|.... -+..+. . .+.|++|++++|...+ .+ ..+..+++|++++++++.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 22344455667788888888876432 111111 1 3688888888886541 11 124455788888887654
No 32
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=1.6e-08 Score=121.79 Aligned_cols=308 Identities=17% Similarity=0.146 Sum_probs=184.4
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE---eCCCCC---HHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS---VSDPFD---EYRV 247 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~---~~~~ 247 (944)
.++||+.|++.|...+..... +...++.+.|..|||||+|++.|.. .+.+.+...+--. ...... ....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999999876543 4567999999999999999999987 3333321111111 111111 2233
Q ss_pred HHHHHHHhh-------------------CCC-----------------CCC-----CCHHH-----HHHHHHHHh-cCCc
Q 042336 248 AKAIIEALE-------------------GSA-----------------PNL-----GELNS-----LLQHICLSI-TGKK 280 (944)
Q Consensus 248 ~~~i~~~l~-------------------~~~-----------------~~~-----~~~~~-----~~~~l~~~l-~~k~ 280 (944)
+++++.++. ... +.. ...+. ....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 344443331 100 000 00111 111222222 4669
Q ss_pred eEEEeCCCCccCccChhhhHhhhccCCC----CcEEEE--Eccch--hhhhcccccceEeCCCCChHHHHHHHHHHhcCC
Q 042336 281 FLLVLDDVWTEDYSKWEPFHNCLMNCLH----GSKILV--TTRKE--TVARMMESIDILIIKELSELECWSLFKRFAFFG 352 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~----gs~iiv--Ttr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 352 (944)
.++|+||+.+.|....+-+......-.. -..|.. |.+.. .+...-.....+.+.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999977766666555544433220 112332 33322 222222345789999999999999998876432
Q ss_pred CCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCC------CCHHHHHHHHhhhhhhhhhhccchhhHHHhhhhcChH
Q 042336 353 RSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFK------RTTEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPS 426 (944)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~ 426 (944)
. ....+..+.|+++..|+|+.+..+-..+..+ .+...|..-... ....... +.+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCCH
Confidence 2 2225667889999999999999998888764 233444322111 1111111 2255568899999999
Q ss_pred HHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhccCCcccc---cc--cCeE---Eech
Q 042336 427 RIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKEMEMIGEEYFDYLATRSFFQEFV---EV--DIIY---KMHD 498 (944)
Q Consensus 427 ~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~~~~L~~~~li~~~~---~~--~~~~---~mH~ 498 (944)
..++.....|++. -.|+.+.|...|-. ....++....+.|....++-..+ .. .... ..|+
T Consensus 309 ~t~~Vl~~AA~iG--~~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIG--NRFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhC--ccCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 9999999999994 56777777777632 34566666666666666654221 11 1123 6788
Q ss_pred HHHHHHH
Q 042336 499 IVHDFAQ 505 (944)
Q Consensus 499 lv~~~~~ 505 (944)
.|++-|-
T Consensus 377 ~vqqaaY 383 (849)
T COG3899 377 RVQQAAY 383 (849)
T ss_pred HHHHHHh
Confidence 8888763
No 33
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=6.4e-09 Score=101.37 Aligned_cols=143 Identities=22% Similarity=0.324 Sum_probs=88.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCcccccc----CceeEEEEeCCCCCHH---HHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINN----FEKRIWVSVSDPFDEY---RVAKAIIEALEGSAPNLGELNSLLQHIC 273 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 273 (944)
+++.|+|.+|+||||+++.++.+...... +...+|+......... .+...+..+...... ........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHHHHHHH-
Confidence 47899999999999999999875333222 4566677765543332 344444333322211 111111111
Q ss_pred HHhcCCceEEEeCCCCccCc--c-----Chhh-hHhhhcc-CCCCcEEEEEccchhh---hhcccccceEeCCCCChHHH
Q 042336 274 LSITGKKFLLVLDDVWTEDY--S-----KWEP-FHNCLMN-CLHGSKILVTTRKETV---ARMMESIDILIIKELSELEC 341 (944)
Q Consensus 274 ~~l~~k~~LlVlDdvw~~~~--~-----~~~~-l~~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~~~ 341 (944)
..+.++++||+|++.+-.. . .+.. +...++. ..++.+++||+|.... .........+.+.+|++++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2267899999999954321 1 1223 3333433 2578999999998765 33334456899999999999
Q ss_pred HHHHHHH
Q 042336 342 WSLFKRF 348 (944)
Q Consensus 342 ~~lf~~~ 348 (944)
.+++.+.
T Consensus 156 ~~~~~~~ 162 (166)
T PF05729_consen 156 KQYLRKY 162 (166)
T ss_pred HHHHHHH
Confidence 9999775
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.91 E-value=1.3e-07 Score=108.09 Aligned_cols=213 Identities=11% Similarity=0.051 Sum_probs=127.8
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc---cccCc--eeEEEEeCCCCCHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV---INNFE--KRIWVSVSDPFDEYR 246 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~ 246 (944)
+..+.||++|+++|...|...-. +.....++.|+|.+|.|||+.++.|.+.... ..... .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 46789999999999998865432 1223367889999999999999999874211 11222 356788877788999
Q ss_pred HHHHHHHHhhCCCCC-CCCHHHHHHHHHHHhc---CCceEEEeCCCCccCccChhhhHhhhccC-CCCcEEEE--Eccch
Q 042336 247 VAKAIIEALEGSAPN-LGELNSLLQHICLSIT---GKKFLLVLDDVWTEDYSKWEPFHNCLMNC-LHGSKILV--TTRKE 319 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iiv--Ttr~~ 319 (944)
++..|.+++.+..+. ..........+...+. +...+||||++..-....-+.|...+... ..+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999999554332 2233445555555442 23469999999432211112244333322 24555555 33322
Q ss_pred h--------hhhcccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhh
Q 042336 320 T--------VARMMESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLL 386 (944)
Q Consensus 320 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l 386 (944)
+ +...++ ...+...|++.++-.+++..++-.......+..++-+|+.++...|-.=.|+.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2 111222 23467799999999999999876432223444445555544444444455555554443
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.89 E-value=8.5e-11 Score=120.32 Aligned_cols=124 Identities=22% Similarity=0.244 Sum_probs=90.2
Q ss_pred CCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccceeccCc-ccccccCcc-ccC
Q 042336 554 KKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHW-LEIKELPDT-CCE 630 (944)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~-~~i~~lP~~-i~~ 630 (944)
+.-..+.+..+.+. ...+..|+.++.||.|||++|. |..+ |.++..+..|-.|-+.+ |+|+.+|+. +++
T Consensus 67 ~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~----Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNN----ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred CcceEEEeccCCcc----cCChhhccchhhhceecccccc----hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 34455566655532 2234568889999999999988 6654 67888888866665555 889989876 888
Q ss_pred CCcccEEEecCccCCcccCcccccCCCCceeecccccccccccc-ccCCCCCCcCC
Q 042336 631 LFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 631 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
|..||-|.+.-|+........+..|++|..|.+..|.+..++.+ +..+.+++++.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 99999999988873334445678888998888877778888773 66677777765
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.84 E-value=7.9e-11 Score=120.54 Aligned_cols=279 Identities=18% Similarity=0.164 Sum_probs=156.3
Q ss_pred cccEEEeccCCCcccccccc-hhhhcccccceeccCccccccc-CccccCCCcccEEEecCccCCcccCcc-cccCCCCc
Q 042336 583 CLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKEL-PDTCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNLR 659 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~ 659 (944)
.-..++|..|. |..+| .+|+.++.||.||||.|.|+.+ |+.+..|..|-.|-+.+++.|..+|.+ ++.|..|+
T Consensus 68 ~tveirLdqN~----I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQ----ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEeccCC----cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 34568888888 88888 5678899999999999999844 777999999999888886669999875 68899999
Q ss_pred eeecccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccC
Q 042336 660 HLIFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKK 738 (944)
Q Consensus 660 ~L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 738 (944)
.|.+.-+.+..++.. +..|++|..|..|. |.........+..+..++.+.. .-. ......++
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyD----n~~q~i~~~tf~~l~~i~tlhl--A~n-----------p~icdCnL 206 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYD----NKIQSICKGTFQGLAAIKTLHL--AQN-----------PFICDCNL 206 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccc----hhhhhhccccccchhccchHhh--hcC-----------cccccccc
Confidence 998866666666544 66677777766432 2111111223444444433210 000 00011111
Q ss_pred CCcCc------EEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCCh-hhhcCCCccEEEe
Q 042336 739 KNLLH------LSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPS-WIMSLNKLKKLEL 811 (944)
Q Consensus 739 ~~L~~------L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L 811 (944)
+.+.. ...+|- ....+-.... ..........+.+.+... ...+.-.++.....|. .+..+++|++|+|
T Consensus 207 ~wla~~~a~~~ietsga--rc~~p~rl~~-~Ri~q~~a~kf~c~~esl--~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGA--RCVSPYRLYY-KRINQEDARKFLCSLESL--PSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred chhhhHHhhchhhcccc--eecchHHHHH-HHhcccchhhhhhhHHhH--HHhhccccCcCCcChHHHHhhcccceEecc
Confidence 11110 011111 0000000000 000001111111111110 0111122223333342 3567889999999
Q ss_pred eccCCCCcCCC-CCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeee
Q 042336 812 SFCNKFEIMPP-LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEI 890 (944)
Q Consensus 812 ~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l 890 (944)
++|.....-+. +..+..++.|.|.++. + .......|..|..|+.+++..++...+.|..+..+.+|.+|.+
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N~-l-------~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRNK-L-------EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcch-H-------HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 98876654433 7778888888887654 2 1222235666666666777777777766666677777888887
Q ss_pred ccccc
Q 042336 891 RDCHK 895 (944)
Q Consensus 891 ~~c~~ 895 (944)
-.||.
T Consensus 354 ~~Np~ 358 (498)
T KOG4237|consen 354 LSNPF 358 (498)
T ss_pred ccCcc
Confidence 77665
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=9e-10 Score=118.11 Aligned_cols=106 Identities=31% Similarity=0.476 Sum_probs=90.8
Q ss_pred HHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccc
Q 042336 574 LQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVG 653 (944)
Q Consensus 574 l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 653 (944)
++.-+..|-.|..|.|..|. +..+|.+++++..|.||+|+.|.+..+|..++.| -|+.|.+++|+ +..+|..|+
T Consensus 90 lp~~~~~f~~Le~liLy~n~----~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNk-l~~lp~~ig 163 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNC----IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNK-LTSLPEEIG 163 (722)
T ss_pred CchHHHHHHHHHHHHHHhcc----ceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCc-cccCCcccc
Confidence 34446666778888888887 7889999999999999999999999999998887 58999999887 889999999
Q ss_pred cCCCCceeeccccccccccccccCCCCCCcCC
Q 042336 654 KLVNLRHLIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 654 ~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
.+..|.+|+.++|.+..+|..++.+++|+.|.
T Consensus 164 ~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred cchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 88999999999998889998888888887775
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=9.8e-08 Score=97.53 Aligned_cols=152 Identities=15% Similarity=0.190 Sum_probs=95.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..+.|+|.+|+|||+|++.+++. .......+.|+++... ..... .+.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-cC
Confidence 46899999999999999999984 3333345567766421 00000 1111122 33
Q ss_pred eEEEeCCCCccC-ccChhh-hHhhhccC-CCCcEEEE-Eccc---------hhhhhcccccceEeCCCCChHHHHHHHHH
Q 042336 281 FLLVLDDVWTED-YSKWEP-FHNCLMNC-LHGSKILV-TTRK---------ETVARMMESIDILIIKELSELECWSLFKR 347 (944)
Q Consensus 281 ~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~iiv-Ttr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 347 (944)
-+||+||+|... ...|+. +...+... ..|..+|| |+.. ..+...+.....++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 589999998642 234553 43434322 23555554 4443 24455555567899999999999999999
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHh
Q 042336 348 FAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIG 383 (944)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 383 (944)
.+....-... +++.+-|++.+.|..-.+..+-
T Consensus 173 ~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 173 NAYQRGIELS----DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHH
Confidence 8865432222 6677788899988776655443
No 39
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.63 E-value=4.1e-07 Score=93.65 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=100.7
Q ss_pred chhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhC
Q 042336 178 RDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEG 257 (944)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 257 (944)
.+..++.+.+++.. .....+.|+|.+|+|||+||+.+++. ........++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------
Confidence 44567777776532 23467889999999999999999984 222333455666543211 00
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCcc-Ch-hhhHhhhccC-CCCcEEEEEccchh---------hhhcc
Q 042336 258 SAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYS-KW-EPFHNCLMNC-LHGSKILVTTRKET---------VARMM 325 (944)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~-~~-~~l~~~l~~~-~~gs~iivTtr~~~---------v~~~~ 325 (944)
. .+...+.+ .-+||+||+..-... .| ..+...+... ..+.++|+||+... +...+
T Consensus 82 --------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 11111222 348999999654322 23 3354444321 23457888887532 11122
Q ss_pred cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHh
Q 042336 326 ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIG 383 (944)
Q Consensus 326 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 383 (944)
.....+.+.++++++...++...+-....... ++..+.+++.+.|+|..+..+.
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLP----DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHH
Confidence 22467899999999999998876432222122 4556778888999988776654
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.63 E-value=5.7e-07 Score=100.77 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=104.8
Q ss_pred CccccchhHHHH---HHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKNT---LKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
.++||++..+.. +..++.. .....+.++|++|+||||||+.+++. .... |+.++......+-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 358888877655 7776643 23456788999999999999999884 2222 233322211111122
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEE--ccchh--hh-h
Q 042336 250 AIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVT--TRKET--VA-R 323 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~-~ 323 (944)
.+++. ... ...+++.+|++|+++.-.....+.+...+.. |..++|. |.+.. +. .
T Consensus 79 ~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 22221 111 1246788999999986554455556555543 4555543 33322 11 1
Q ss_pred cccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHh
Q 042336 324 MMESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIG 383 (944)
Q Consensus 324 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 383 (944)
.......+.+.+++.++.+.++.+.+....... .+..++..+.|++.|+|.|..+..+.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 112246889999999999999988653211100 01225567789999999997765443
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=2.5e-08 Score=95.42 Aligned_cols=128 Identities=24% Similarity=0.252 Sum_probs=51.2
Q ss_pred cCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccc-c
Q 042336 551 FNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTC-C 629 (944)
Q Consensus 551 ~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i-~ 629 (944)
.++.++|.|.+.++.... +..+-..+.+|++|+|++|. +.+++ .+..+++|+.|++++|.|+.+++.+ .
T Consensus 16 ~n~~~~~~L~L~~n~I~~-----Ie~L~~~l~~L~~L~Ls~N~----I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-----IENLGATLDKLEVLDLSNNQ----ITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS------S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccccc-----ccchhhhhcCCCEEECCCCC----Ccccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 455677888888876432 22211256788999999998 76665 4778899999999999998887655 3
Q ss_pred CCCcccEEEecCccCCcccC--cccccCCCCceeeccccccccccc----cccCCCCCCcCCceEe
Q 042336 630 ELFNLQTIEIEGCYNLNRLP--QGVGKLVNLRHLIFDVNFVEYMPK----GIERLTCLRTLSEFVV 689 (944)
Q Consensus 630 ~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~lp~----~i~~l~~L~~L~~~~~ 689 (944)
.+++|++|++++|. +..+- ..+..+++|++|++..|++...+. -+..+++|+.|+...+
T Consensus 86 ~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 NLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 68899999999887 55442 345678899999998877765542 2567888888875443
No 42
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.58 E-value=1.1e-07 Score=88.30 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=79.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCcccc---ccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVI---NNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLS 275 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 275 (944)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...++++++.......+.+.+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999998842110 013456799998888999999999999998766655667777777777
Q ss_pred hcCCc-eEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccc
Q 042336 276 ITGKK-FLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRK 318 (944)
Q Consensus 276 l~~k~-~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 318 (944)
+...+ .+||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76554 59999999543 3233333433322 556677777664
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.54 E-value=5.4e-07 Score=93.96 Aligned_cols=171 Identities=20% Similarity=0.233 Sum_probs=100.5
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++|....+.++++ .+.+.-...||++|+||||||+.+.. .....| ..+|-..+-.+=++.++
T Consensus 30 ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 30 EHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREII 93 (436)
T ss_pred HhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHH
Confidence 345555555554443 23566677999999999999999988 344444 33333322222222322
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEE--Eccchhh---hhcccc
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILV--TTRKETV---ARMMES 327 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~ 327 (944)
++- -.....|++.+|++|.|..-+..+-+.+ ||.-..|.-|+| ||-+... ......
T Consensus 94 e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 94 EEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred HHH----------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 221 1123358999999999976554444444 444455887777 4555432 122244
Q ss_pred cceEeCCCCChHHHHHHHHHHhcCCCCCCC--ch-hHHHHHHHHHHhhCCChhh
Q 042336 328 IDILIIKELSELECWSLFKRFAFFGRSPFE--CK-QLEEIGRKIVGKCKGLPLA 378 (944)
Q Consensus 328 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~--~~-~~~~~~~~i~~~~~GlPla 378 (944)
..++.+++|+.++-.+++.+.+........ .. --++.-..++..++|--.+
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 679999999999999999884322221111 01 1134556677888886543
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=9.4e-06 Score=93.03 Aligned_cols=185 Identities=15% Similarity=0.156 Sum_probs=115.9
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc-------------------ccCcee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI-------------------NNFEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 233 (944)
.++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-. +.|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 468999999999999985432 24566799999999999999887632111 111122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
++++.+....+++ +.+++..... -..++.-++|||++..-+...|+.+...+.......++
T Consensus 91 iEIDAas~rgVDd------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 91 VEMDAASNRGVDE------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred EEecccccccHHH------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 2222221111111 1111111111 11345568999999776666788888888776667888
Q ss_pred EEEccchh-hhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh-hHHHHhh
Q 042336 313 LVTTRKET-VARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL-AAKTIGS 384 (944)
Q Consensus 313 ivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~~ 384 (944)
|+||.+.. +... ..-...+.+..++.++..+.+.+.+...+...+ ++..+.|++.++|... |+..+-.
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88877643 3222 122468999999999999999887644332222 5667789999998664 5444333
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=6.1e-09 Score=111.89 Aligned_cols=128 Identities=24% Similarity=0.340 Sum_probs=94.6
Q ss_pred chhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccC
Q 042336 546 FPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELP 625 (944)
Q Consensus 546 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP 625 (944)
+|..+.+...|..|++..+.... ++.-+.. --|++|.+++|. ++.+|..|+.+.+|..|+.+.|.+..+|
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~-----lp~~lC~-lpLkvli~sNNk----l~~lp~~ig~~~tl~~ld~s~nei~slp 182 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSH-----LPDGLCD-LPLKVLIVSNNK----LTSLPEEIGLLPTLAHLDVSKNEIQSLP 182 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhc-----CChhhhc-CcceeEEEecCc----cccCCcccccchhHHHhhhhhhhhhhch
Confidence 45555556666666666554321 2221222 237888888887 7888888888888888888888888888
Q ss_pred ccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCC
Q 042336 626 DTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 626 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
..++.|..|+.|+++.|+ +..+|..+..|+ |..||++||++..+|..|.+|+.||+|.
T Consensus 183 sql~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred HHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeee
Confidence 888888888888888887 777888887444 8888888888888888888888888876
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.50 E-value=2.2e-06 Score=94.23 Aligned_cols=199 Identities=13% Similarity=0.103 Sum_probs=110.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCc-eeEEEEeCCCCCH-HHHHH-
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFE-KRIWVSVSDPFDE-YRVAK- 249 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~- 249 (944)
..++|++..++.+..++..+ ....+.++|++|+||||+|+.+.+.-. ...+. ..+.+++++-.+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 46899999999999988532 334578999999999999999887321 11222 2344444321100 00000
Q ss_pred --HHHHHhhCC-CCCCCCHHHHHHHHHHH-----hcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-h
Q 042336 250 --AIIEALEGS-APNLGELNSLLQHICLS-----ITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-T 320 (944)
Q Consensus 250 --~i~~~l~~~-~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~ 320 (944)
.....++.. .......+.....+... +.+.+-+||+||+..-.......+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00001111111111111 12445589999995443333445666665555567788877543 2
Q ss_pred hhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 321 VARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 321 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
+.... .....+.+.+++.++...++.+.+...+.... .+..+.+++.++|.+-.+...
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22211 22457888999999999998887543332222 566778889999987665443
No 47
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.5e-06 Score=92.58 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=110.9
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccccc-------------------Ccee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINN-------------------FEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 233 (944)
.+++|.+.-++.+...+..+. -...+.++|+.|+||||+|+.+.+.-.-... +...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999998885432 3457789999999999999999873211000 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
.++..+....++. .+.+++ .+.. ...+++-++|+|++...+...++.+...+.......++
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~-----------------~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILD-----------------NIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EEecccccCCHHH-HHHHHH-----------------HHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1221111111111 111111 1111 01345569999999665555677777777766667777
Q ss_pred EEEccch-hhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 313 LVTTRKE-TVARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 313 ivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
|++|.+. .+.... +....+++.+++.++..+.+...+...+.... ++.++.|++.++|.|..+..
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 7776543 332221 22468999999999999988876543322122 45677899999998864433
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=7.6e-08 Score=108.31 Aligned_cols=103 Identities=30% Similarity=0.398 Sum_probs=88.8
Q ss_pred hhcCCcccEEEeccCCCcccccccchhhhccc-ccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCC
Q 042336 578 FNQFTCLRALKITRNSKENSIYEIPKEIQKLI-HLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLV 656 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~-~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 656 (944)
+..++.+..|++.++. +.++|..++.+. +|++|+++++.+..+|..++.+++|+.|+++.|. +..+|...+.++
T Consensus 112 ~~~~~~l~~L~l~~n~----i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~ 186 (394)
T COG4886 112 LLELTNLTSLDLDNNN----ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLS 186 (394)
T ss_pred hhcccceeEEecCCcc----cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhh
Confidence 4555789999999988 888888888885 9999999999999998889999999999999988 888888777899
Q ss_pred CCceeeccccccccccccccCCCCCCcCC
Q 042336 657 NLRHLIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 657 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
+|+.|+++.|.+..+|..++.+..|++|.
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELD 215 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhh
Confidence 99999999999999988776666777776
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.5e-08 Score=102.26 Aligned_cols=150 Identities=16% Similarity=0.072 Sum_probs=77.2
Q ss_pred CceEEEEEEeCCCCcch--hhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcc
Q 042336 531 EELRHSMLVFGNEASFP--VFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKL 608 (944)
Q Consensus 531 ~~~r~lsl~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l 608 (944)
++.|.+++........+ .....|+++|.|+++.+-.. ....+-.+...+|+|+.|+|+.|.+.....+.- -..+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~--~~~l 196 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT--TLLL 196 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHH--hHHHHHHHHHhcccchhcccccccccCCccccc--hhhh
Confidence 44555555555444322 24456777777777765321 122344455677777777777766322111111 1245
Q ss_pred cccceeccCccccc--ccCccccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccccc--ccccCCCCCCcC
Q 042336 609 IHLRYFKLHWLEIK--ELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMP--KGIERLTCLRTL 684 (944)
Q Consensus 609 ~~Lr~L~Ls~~~i~--~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L 684 (944)
.||+.|.|++|.+. .+-...-.+++|+.|+|.+|..+..--....-+..|+.|+|+.|.+...+ ..++.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 66777777777654 22222334566777777766423222222334566667777666555444 224444444444
No 50
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.48 E-value=2.9e-07 Score=91.44 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=32.3
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.|+||+++++++...+. .. .....+.+.|+|.+|+|||+|++.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999995 22 2345689999999999999999999884
No 51
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=4.4e-06 Score=90.15 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=117.9
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC----ccccccCceeEEEEe-CCCCCHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND----NDVINNFEKRIWVSV-SDPFDEYRV 247 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~~ 247 (944)
.+++|.+..++.+..++..+ .-.....++|+.|+||||+|+.+++. .....|+|...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789999999999998543 23467789999999999999988872 122345565555442 22222222
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhh-hc-c
Q 042336 248 AKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVA-RM-M 325 (944)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~-~ 325 (944)
.+++.+.+... -..+++-++|+|++...+...++.+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222322211 113556677788876556678899999999888899999888654321 11 1
Q ss_pred cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 326 ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 326 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
.....+.+.++++++....+.+...+ .. ++.++.++..++|.|.-+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22568999999999998887665311 11 334667889999998765433
No 52
>PTZ00202 tuzin; Provisional
Probab=98.46 E-value=6.4e-06 Score=87.72 Aligned_cols=168 Identities=14% Similarity=0.150 Sum_probs=105.3
Q ss_pred cccccCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 167 TALINVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 167 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
..+.+.+.|+||+++...+...|...+. ...+++.|+|++|+|||||++.+..... + .+++. +..+..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~v--Nprg~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFV--DVRGTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEE--CCCCHHH
Confidence 3445667899999999999999965433 2456999999999999999999987322 1 12222 2227899
Q ss_pred HHHHHHHHhhCCCCCCC--CHHHHHHHHHHH-hc-CCceEEEeCCCCccCccChhhhH---hhhccCCCCcEEEEEccch
Q 042336 247 VAKAIIEALEGSAPNLG--ELNSLLQHICLS-IT-GKKFLLVLDDVWTEDYSKWEPFH---NCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~-l~-~k~~LlVlDdvw~~~~~~~~~l~---~~l~~~~~gs~iivTtr~~ 319 (944)
+++.++.+|+.+..... -.+.+.+.+.+. .. |++.+||+-==.. .....+. ..|.....-|.|++---.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehHh
Confidence 99999999997322211 123333333321 13 6777777642211 1122221 1344445567788766555
Q ss_pred hhhhccc---ccceEeCCCCChHHHHHHHHHH
Q 042336 320 TVARMME---SIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 320 ~v~~~~~---~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
....... --..|-++.++.++|.++-.+.
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 4433221 2457899999999999887664
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=98.46 E-value=2.2e-05 Score=89.89 Aligned_cols=247 Identities=17% Similarity=0.145 Sum_probs=139.4
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+..++.+.+|+..... +...+.+.|+|++|+||||+|+.++++. .|+ .+-++.+...+.. .+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHH
Confidence 4689999999999999864321 1226789999999999999999999842 122 2333444432222 223333
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCCccCc----cChhhhHhhhccCCCCcEEEEEccchh-hhh-c-
Q 042336 253 EALEGSAPNLGELNSLLQHICLSIT-GKKFLLVLDDVWTEDY----SKWEPFHNCLMNCLHGSKILVTTRKET-VAR-M- 324 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~- 324 (944)
....... .+. .++-+||+|++..-.. ..+..+...+.. .+..||+|+.+.. ... .
T Consensus 86 ~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 2221110 012 3678999999965321 234555555553 2344666664321 111 1
Q ss_pred ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCC---CHHHHHHHHhh
Q 042336 325 MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKR---TTEEWQNILDS 401 (944)
Q Consensus 325 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~---~~~~w~~~~~~ 401 (944)
-.....+.+.+++.++....+...+...+.... .+....|++.++|..-.+......+.... +.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 122467899999999999988877654333222 45678899999998776654443333321 2333322221
Q ss_pred hhhhhhhhccchhhHHHhhhh-cChHHHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccC
Q 042336 402 EMWQLEEFEKDLLAPLLLSYT-DLPSRIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTK 462 (944)
Q Consensus 402 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~ 462 (944)
......++.++..-+. .-+......+.. ..++.+ .+-.|+.|.+....
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKEY 272 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhcccccc
Confidence 1112345666664443 223333332222 123333 46789999987653
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.4e-06 Score=97.63 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=115.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccccc-------------------Ccee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINN-------------------FEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 233 (944)
.++||.+.-++.|.+++.... -...+.++|..|+||||+|+.+++.-.-... |..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999998885432 2455689999999999999999874211100 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
+++..+....++ ++.++...+.. ...+++-++|+|++........+.+...+.......++
T Consensus 91 iEidAas~~kVD------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKVD------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222211111111 11222222211 12467789999999776667778888887766566777
Q ss_pred EEEccc-hhhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 313 LVTTRK-ETVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 313 ivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
|++|.+ ..+... ......|.+.+++.++..+++.+.+-....... .+..+.|++.++|.|.-+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e----deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE----AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 766654 333322 222478999999999999999886543222122 556788999999998655444
No 55
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.44 E-value=4.3e-06 Score=97.66 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=108.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC---ceeEEEEeCCC---CCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF---EKRIWVSVSDP---FDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~ 246 (944)
+.++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35889999999988877432 34568999999999999999998754332322 12345555321 12222
Q ss_pred HHHHH---------------HHHhhCC------------------CCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc
Q 042336 247 VAKAI---------------IEALEGS------------------APNLGELNSLLQHICLSITGKKFLLVLDDVWTEDY 293 (944)
Q Consensus 247 ~~~~i---------------~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~ 293 (944)
+...+ +...+.. +.+..+ ...+..+.+.++++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 21111 1111110 111112 2356778888899999999888887777
Q ss_pred cChhhhHhhhccCCCCcEEEE--Eccchhh-hhcc-cccceEeCCCCChHHHHHHHHHHhc
Q 042336 294 SKWEPFHNCLMNCLHGSKILV--TTRKETV-ARMM-ESIDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 294 ~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
..|+.+...+....+...|++ ||++... ...+ .....+.+.+++.++.+.++.+.+-
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 788888877777666655555 5664331 1111 1234678899999999999998764
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.7e-06 Score=94.38 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=114.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc-------------------ccCcee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI-------------------NNFEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 233 (944)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+.+.-.-. +.|..+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 468999999999999996432 34678899999999999999887631110 111112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
+.+..+....++. +.++...... -..+++-++|+|++..-+....+.+...+.....+.++
T Consensus 90 iEIDAAs~~~Vdd------------------IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 90 IEIDAASRTKVED------------------TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred EEecccccCCHHH------------------HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 2222211111111 1111111111 12466679999999766656677788777776667778
Q ss_pred EEEccch-hhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 313 LVTTRKE-TVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 313 ivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
|++|.+. .+... ......+.+.+++.++..+.+.+.+-..+.... .+....|++.++|.+..+..+
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 8777653 22211 233578999999999999988877644333223 556677999999988555433
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.6e-08 Score=102.15 Aligned_cols=218 Identities=19% Similarity=0.150 Sum_probs=116.2
Q ss_pred cchhhhcccccceeccCcccccccCc--cccCCCcccEEEecCccC--CcccCcccccCCCCceeecccccccccccccc
Q 042336 601 IPKEIQKLIHLRYFKLHWLEIKELPD--TCCELFNLQTIEIEGCYN--LNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIE 676 (944)
Q Consensus 601 lp~~i~~l~~Lr~L~Ls~~~i~~lP~--~i~~L~~L~~L~L~~~~~--l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~ 676 (944)
+-..-+++.+||...|.++.+...+. ....|++++.|||++|-. ...+-.-+..|++|+.|+++.|.+.....
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--- 189 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--- 189 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc---
Confidence 33334567777777777777665552 456677777777777641 11222333566777777776654322110
Q ss_pred CCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCch
Q 042336 677 RLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEED 756 (944)
Q Consensus 677 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 756 (944)
.. .+ ..+++|+.|.|+.|.++
T Consensus 190 s~---~~----------------------------------------------------~~l~~lK~L~l~~CGls---- 210 (505)
T KOG3207|consen 190 SN---TT----------------------------------------------------LLLSHLKQLVLNSCGLS---- 210 (505)
T ss_pred cc---ch----------------------------------------------------hhhhhhheEEeccCCCC----
Confidence 00 00 01235556666655333
Q ss_pred hhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCC-CCCChhhhcCCCccEEEeeccCCCCc--CCCCCCCCCcceee
Q 042336 757 EEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRG-ETLPSWIMSLNKLKKLELSFCNKFEI--MPPLGKLPSLELLE 833 (944)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~ 833 (944)
..++...+..+|+|+.|.+.+|.. .........+..|+.|+|++|...+. .+..+.+|.|..|.
T Consensus 211 -------------~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 211 -------------WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred -------------HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 223445555667777777777641 11111122456788888888776543 34477788888888
Q ss_pred ecccccceEeCc--cccCccCccCccccccccccccccccccccCCccccCcccceeeecccccc
Q 042336 834 VFALQSVKRVGD--EFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKL 896 (944)
Q Consensus 834 L~~~~~l~~~~~--~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 896 (944)
+..|. +..+.. .-.......||+|++|.+..-+ ...|... ..+..+++|+.|.+..++.-
T Consensus 278 ls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl-~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSL-NHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccC-cchhcCCCccchhhhcccccceeeecccCc-ccccccc-chhhccchhhhhhccccccc
Confidence 87654 111110 0001112357777777664421 2224433 23456778888877766543
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=8.5e-07 Score=100.38 Aligned_cols=197 Identities=17% Similarity=0.160 Sum_probs=113.9
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+....|.+.+-. .+.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 368999999999988886432 3456789999999999999999874221122222222221100 0000000000
Q ss_pred HHhhCC-CCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEcc-chhhhhcc-ccc
Q 042336 253 EALEGS-APNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTR-KETVARMM-ESI 328 (944)
Q Consensus 253 ~~l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~~~ 328 (944)
..+... .....++.++...+.. -..+++-++|+|+++..+...++.+...+......+.+|++|. ...+.... ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 0001111122111111 1235667999999976665667778888776655666666554 33333222 224
Q ss_pred ceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 329 DILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 329 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
..+.+.+++.++....+.+.+-..+.... ++....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 68999999999999999887654332222 566788999999988644
No 59
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=9.9e-07 Score=81.21 Aligned_cols=119 Identities=23% Similarity=0.269 Sum_probs=78.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
+++.|.|+.|+|||||+++++++.. ....++++++.+........ .+ ....+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 5899999999999999999987422 33556777766532211000 00 2222333334478
Q ss_pred eEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhhhc------ccccceEeCCCCChHHH
Q 042336 281 FLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVARM------MESIDILIIKELSELEC 341 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 341 (944)
.+|+||++.. ...|......+.+..+..+|++|+.+...... .+....++|.||+-.|.
T Consensus 63 ~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8999999954 45788877777776667899999987655432 12245788999987764
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.40 E-value=1.6e-06 Score=82.43 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=73.6
Q ss_pred ccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 042336 176 RGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEAL 255 (944)
Q Consensus 176 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 255 (944)
+|++..++.+...+... ..+.+.|+|.+|+||||+++.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888999999888542 346788999999999999999998422 222345666665433322221111100
Q ss_pred hCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccC------CCCcEEEEEccchh
Q 042336 256 EGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNC------LHGSKILVTTRKET 320 (944)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 320 (944)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112233567789999999753222223344433332 35778888887553
No 61
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.7e-05 Score=85.98 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=130.8
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCc-e-eEEEEeCCCCCHHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFE-K-RIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~i 251 (944)
.+.+|+.+++++...|...-. +..+.-+.|+|.+|+|||+.++.+.+. ++.... . .++|++-...++.+++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 389999999999988765432 223334889999999999999999983 433321 1 7899999999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhc--CCceEEEeCCCCccCccChhhhHhhhccCCC-CcEEEE--Eccchhhhhccc
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSIT--GKKFLLVLDDVWTEDYSKWEPFHNCLMNCLH-GSKILV--TTRKETVARMME 326 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~iiv--Ttr~~~v~~~~~ 326 (944)
+++++..........+....+.+.+. ++.++||||++..-....-+.+...+..... .++|++ .+-+......+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99998544444555667777777664 6889999999944211111455555554433 344433 333333322221
Q ss_pred c-------cceEeCCCCChHHHHHHHHHHhcCCC--CCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 327 S-------IDILIIKELSELECWSLFKRFAFFGR--SPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 327 ~-------~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
. ...+..+|-+.+|-..++..++-..- .......++-++...++..|-.=.|+..+
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1 23478899999999999988764322 11233344444443444443334444443
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.38 E-value=8.1e-06 Score=89.04 Aligned_cols=182 Identities=14% Similarity=0.111 Sum_probs=108.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEe--CCCCCHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSV--SDPFDEYRVAKA 250 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~ 250 (944)
.+++|+++.++.+..++... ....+.++|.+|+||||+|+.+.+... ...+. ..++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 45889999999999998532 234579999999999999999987421 11121 122222 2222211 1222
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-hhhhc-cccc
Q 042336 251 IIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVARM-MESI 328 (944)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~ 328 (944)
.+.++....+ .....+-+|++|++..-.......+...+......+++|+++... .+... ....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 2222111100 001345689999985443334556666666555567777777432 11111 1123
Q ss_pred ceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 329 DILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 329 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
..+.+.+++.++....+...+...+.... ++....+++.++|.+.-+..
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 47899999999999888887654332222 55677889999998866433
No 63
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.37 E-value=1.8e-06 Score=84.31 Aligned_cols=177 Identities=21% Similarity=0.246 Sum_probs=95.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+|||.+.-+..+.-++..... .++.+.-+.+||++|+||||||+-+.+. ....|. +.+... .
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i---------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-I---------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-h----------
Confidence 5799999888776555432211 2345677889999999999999999984 444442 222211 0
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC--------CC-----------cEEE
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL--------HG-----------SKIL 313 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~--------~g-----------s~ii 313 (944)
....++...+. .+ +++-+|++|.+..-+...-+.+..++.++. ++ +-|=
T Consensus 87 ----------~k~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 87 ----------EKAGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred ----------hhHHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 00111222221 12 245577778886655444445555555431 11 2244
Q ss_pred EEccchhhhhccccc--ceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 314 VTTRKETVARMMESI--DILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 314 vTtr~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
-|||..-+...+... -+.++...+.+|-.++..+.+..-.. +-.++.+.+|++.+.|-|--+.-+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 477765554444332 24579999999999999886644332 233778899999999999755444
No 64
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=2.8e-07 Score=88.26 Aligned_cols=122 Identities=22% Similarity=0.209 Sum_probs=52.1
Q ss_pred CCceEEEEEEeCCCCcchhhcc-CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhh-hc
Q 042336 530 EEELRHSMLVFGNEASFPVFMF-NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEI-QK 607 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i-~~ 607 (944)
+.+.|.+.+.++.+..+. .+. .+.+|+.|+++++.... +.. +..++.|++|++++|. +.+++..+ ..
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-----l~~-l~~L~~L~~L~L~~N~----I~~i~~~l~~~ 86 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-----LEG-LPGLPRLKTLDLSNNR----ISSISEGLDKN 86 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S-------TT-----TT--EEE--SS-------S-CHHHHHH
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCcc-----ccC-ccChhhhhhcccCCCC----CCccccchHHh
Confidence 345688889888877543 343 57899999999987532 222 6778999999999999 88887655 46
Q ss_pred ccccceeccCcccccccC--ccccCCCcccEEEecCccCCcccCc----ccccCCCCceeec
Q 042336 608 LIHLRYFKLHWLEIKELP--DTCCELFNLQTIEIEGCYNLNRLPQ----GVGKLVNLRHLIF 663 (944)
Q Consensus 608 l~~Lr~L~Ls~~~i~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l 663 (944)
+++|+.|+|++|.|..+- ..+..+++|++|++.+|. +...+. -+..+|+|+.||-
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 999999999999987553 347789999999999998 544442 4578999999985
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=7.3e-06 Score=88.62 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=107.6
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCc-eeEEEEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFE-KRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 251 (944)
.+++|.++.++.|..++... ...-+.++|++|+||||+|+.+++.- ....|. ..+-++.++....+ ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 46889988888888877532 23346799999999999999998731 112222 11222223222222 22222
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-hhhhc-ccccc
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVARM-MESID 329 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~ 329 (944)
+..+...... .-.++.-++|+|++..-.....+.+...+......+++|+++... .+... .....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2222111000 002456799999996654444455666665545567777777542 22111 11235
Q ss_pred eEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHH
Q 042336 330 ILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAK 380 (944)
Q Consensus 330 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 380 (944)
.+++.++++++....+...+-..+.... ++....|++.++|..-.+.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 7899999999999998887644332222 4567788999998775443
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=9e-06 Score=92.23 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=113.6
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc-------------------cccCcee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV-------------------INNFEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-------------------~~~F~~~ 233 (944)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++...- .+.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999988543 23456789999999999999999762110 0112223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
+++.......+++ ...+...+.. -..+++-++|+|++...+...++.+...+......+.+
T Consensus 91 ieidaas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 3333222222221 1222222221 12466779999999766666777888888876566666
Q ss_pred EEEc-cchhhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh-hHHHHh
Q 042336 313 LVTT-RKETVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL-AAKTIG 383 (944)
Q Consensus 313 ivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 383 (944)
|++| ....+... ......+++.+++.++....+.+.+-..+.... ++....|++.++|.+- |+..+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 6544 43333322 233578999999999988888775433222122 5556778999999764 444443
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.2e-05 Score=90.60 Aligned_cols=194 Identities=15% Similarity=0.154 Sum_probs=113.4
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCce-eEEEEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEK-RIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 251 (944)
.+++|.+.-+..+...+.... -...+.++|..|+||||+|+.+++.-.-...... .-+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 368999999998888775332 2457889999999999999999873211110000 000000000 000011
Q ss_pred HHHhhC-----CCCCCCCHHHHHHHHHH----HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc-cchhh
Q 042336 252 IEALEG-----SAPNLGELNSLLQHICL----SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT-RKETV 321 (944)
Q Consensus 252 ~~~l~~-----~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 321 (944)
...... ........+++...+.. -+.+++-++|+|+++.-+...++.+...+......+.+|++| +...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 000000 00001112222222211 134677799999998766677888888888766666666544 44444
Q ss_pred hhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 322 ARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 322 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
.... .....+.+.+++.++....+...+...+.... ++....|++.++|.+.-+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4332 22467899999999999999988754432222 455677999999987544
No 68
>PRK08727 hypothetical protein; Validated
Probab=98.35 E-value=1.1e-05 Score=82.66 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=89.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..+.|+|..|+|||+|++.+++. .......++|+++.+ ....+. ... +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~--------------~~~----~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR--------------DAL----EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH--------------HHH----HHH-hcC
Confidence 45999999999999999999873 333334556776432 111111 111 111 233
Q ss_pred eEEEeCCCCccC-ccChhh-hHhhhccC-CCCcEEEEEccchh---------hhhcccccceEeCCCCChHHHHHHHHHH
Q 042336 281 FLLVLDDVWTED-YSKWEP-FHNCLMNC-LHGSKILVTTRKET---------VARMMESIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 281 ~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
-+||+||+.... ...|.. +...+... ..|..||+|++... +...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999994321 123433 22222221 24667999998532 2222334568999999999999999987
Q ss_pred hcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 349 AFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
+....-... ++...-|++.++|-.-.+
T Consensus 175 a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 654322222 566677888888766554
No 69
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=8.4e-06 Score=92.16 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=113.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc------------------------c
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI------------------------N 228 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~------------------------~ 228 (944)
.++||.+.-++.|.+++.... -...+.++|..|+||||+|+.+.+...-. +
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 468999999999999996432 34567899999999999999887631110 0
Q ss_pred cCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH----HhcCCceEEEeCCCCccCccChhhhHhhhc
Q 042336 229 NFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL----SITGKKFLLVLDDVWTEDYSKWEPFHNCLM 304 (944)
Q Consensus 229 ~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~ 304 (944)
.|...+++..+.. ..++++...+.. -..++.-++|+|++...+...++.+...+.
T Consensus 91 ~hpDviEIdAas~---------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDAASN---------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEeccccc---------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 1111122221111 112222222221 124666799999997766677778887776
Q ss_pred cCCCCcEEEEEcc-chhhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 305 NCLHGSKILVTTR-KETVARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 305 ~~~~gs~iivTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
.-..+.++|++|. ...+...+ .-...+.+..++.++..+.+.+.+...+.... .+..+.|++.++|.|.-...+
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6555666555554 44443332 22568999999999999988876543322122 445677999999999755443
No 70
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=1e-07 Score=94.39 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=92.9
Q ss_pred ccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCcccc
Q 042336 550 MFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCC 629 (944)
Q Consensus 550 ~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~ 629 (944)
+..+..|.+++++++.. ..+.+...-.|.+|+|+++.|+ +..+-. +..|++|..||||+|.+.++-..-.
T Consensus 280 ~dTWq~LtelDLS~N~I-----~~iDESvKL~Pkir~L~lS~N~----i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI-----TQIDESVKLAPKLRRLILSQNR----IRTVQN-LAELPQLQLLDLSGNLLAECVGWHL 349 (490)
T ss_pred cchHhhhhhccccccch-----hhhhhhhhhccceeEEeccccc----eeeehh-hhhcccceEeecccchhHhhhhhHh
Confidence 34567788888887753 2345556777888889988888 555433 7788888888998888877666666
Q ss_pred CCCcccEEEecCccCCcccCcccccCCCCceeecccccccccc--ccccCCCCCCcCC
Q 042336 630 ELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMP--KGIERLTCLRTLS 685 (944)
Q Consensus 630 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~ 685 (944)
+|-|.++|.|++|. +..+ +++++|-+|..||+..|.++.+- .+||+|+.|+++.
T Consensus 350 KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred hhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 77888888888876 6666 56888888888888888777653 4688888888876
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.31 E-value=1.5e-07 Score=95.91 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=68.7
Q ss_pred hhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchh-------hhcccccceeccCcc
Q 042336 547 PVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKE-------IQKLIHLRYFKLHWL 619 (944)
Q Consensus 547 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~-------i~~l~~Lr~L~Ls~~ 619 (944)
......+..+..+.++++........++...+.+-+.||..+++.-.......++|++ +-.+++|++|+||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3455667888889999887554334556666788889999999876544445556654 345678999999998
Q ss_pred ccc-----ccCccccCCCcccEEEecCcc
Q 042336 620 EIK-----ELPDTCCELFNLQTIEIEGCY 643 (944)
Q Consensus 620 ~i~-----~lP~~i~~L~~L~~L~L~~~~ 643 (944)
-+. .+-+-|.++..|++|.|.+|.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 764 333446678888888888887
No 72
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=1e-06 Score=90.07 Aligned_cols=88 Identities=20% Similarity=0.114 Sum_probs=60.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC--CCHHHHHHHHHHHhhCCCCCCCCHH------HHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP--FDEYRVAKAIIEALEGSAPNLGELN------SLLQH 271 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 271 (944)
-..++|+|.+|+|||||+++++++.... +|+..+|+.+++. +++.++++.+...+-....+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999975444 8999999998776 7999999998333222111111111 11222
Q ss_pred HHH-HhcCCceEEEeCCC
Q 042336 272 ICL-SITGKKFLLVLDDV 288 (944)
Q Consensus 272 l~~-~l~~k~~LlVlDdv 288 (944)
... .-.+++.++++|++
T Consensus 95 a~~~~~~G~~vll~iDei 112 (249)
T cd01128 95 AKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHCCCCEEEEEECH
Confidence 222 23589999999999
No 73
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.27 E-value=1.4e-05 Score=82.15 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=88.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGK 279 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 279 (944)
...+.|+|..|+|||+||+.+++... ... ...++++..... .. + .. ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~------------------~~-~~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F------------------DF-DPE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H------------------hh-ccc
Confidence 45688999999999999999988421 111 234455443311 00 0 01 123
Q ss_pred ceEEEeCCCCccCccChhhhHhhhccC-CCCc-EEEEEccchhhhh--------cccccceEeCCCCChHHHHHHHHHHh
Q 042336 280 KFLLVLDDVWTEDYSKWEPFHNCLMNC-LHGS-KILVTTRKETVAR--------MMESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 280 ~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
.-+||+||+..-+...-..+...+... ..+. .||+|++...... .+.....+.+.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 447899999543322223344444322 2344 4666666433221 22224688999999988777776643
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhh
Q 042336 350 FFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLL 386 (944)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l 386 (944)
-...-... ++..+.+++.+.|++..+..+...+
T Consensus 171 ~~~~v~l~----~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGLQLA----DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22221122 5667778888999998887765554
No 74
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.27 E-value=1.2e-07 Score=93.91 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=29.6
Q ss_pred cccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccc
Q 042336 609 IHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEY 670 (944)
Q Consensus 609 ~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 670 (944)
+.|..||||+|.|+.+-+++.-+++++.|+++.|. +..+.. +..|++|++||+++|.+..
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccchhHh
Confidence 34555555555555555555555555555555554 333322 4445555555555544433
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.5e-05 Score=91.90 Aligned_cols=194 Identities=16% Similarity=0.225 Sum_probs=114.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.++||.+.-++.|...+..+. -...+.++|..|+||||+|+.+.+...-...+. ...+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 468999999999998885432 235578999999999999999977311110000 00111111111111
Q ss_pred HH-------hhCC-CCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc-hhhh
Q 042336 253 EA-------LEGS-APNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK-ETVA 322 (944)
Q Consensus 253 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 322 (944)
.. +... .....++.++...+.. -..+++-++|+|++...+....+.+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 0000 0011112222222221 12467779999999776667788888888776666666666654 3333
Q ss_pred hc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 323 RM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 323 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
.. ......|.+.+++.++....+.+..-..+.... ++..+.|++.++|.+.-+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 222578999999999999998876532222122 455677999999988755444
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.25 E-value=7.5e-06 Score=96.45 Aligned_cols=174 Identities=20% Similarity=0.250 Sum_probs=96.7
Q ss_pred CccccchhHHH---HHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKN---TLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
.+|+|.+..+. .+...+.. +....+.++|++|+||||||+.+++. ...+|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 35889887664 45555532 23456789999999999999999983 334441 111110 0000
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHh--cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEE--ccchh--hhh
Q 042336 250 AIIEALEGSAPNLGELNSLLQHICLSI--TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVT--TRKET--VAR 323 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~ 323 (944)
+...........+ .+++.+|||||++.-+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111111221111 2567899999996544444555554443 35555553 33321 211
Q ss_pred c-ccccceEeCCCCChHHHHHHHHHHhcCCCC---CCCchhHHHHHHHHHHhhCCChhhH
Q 042336 324 M-MESIDILIIKELSELECWSLFKRFAFFGRS---PFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 324 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~---~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
. ......+.+++++.++...++.+.+-.... ...-.-.++....|++.+.|..-.+
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 1 122467999999999999999876531000 0001112455677888888865433
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1e-05 Score=89.23 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=113.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++.-.-..... ...+....+-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 468999999999998885432 234678999999999999999987311110000 001111111111111110
Q ss_pred HHh---hC-CCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEcc-chhhhhcc-
Q 042336 253 EAL---EG-SAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTR-KETVARMM- 325 (944)
Q Consensus 253 ~~l---~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~- 325 (944)
..+ .. ......++.++...+.. ...++.-++|+|++..-+...++.+...+........+|++|. ...+....
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 00 00011122222222222 1245667999999977666778888777765445555555554 34443322
Q ss_pred cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 326 ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 326 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
.....|.+.+++.++..+.+.+.+-..+.... ++....|++.++|.+.-+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHHH
Confidence 22467999999999999988887644332222 556788999999988544
No 78
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.7e-05 Score=90.90 Aligned_cols=183 Identities=13% Similarity=0.176 Sum_probs=110.8
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccc-------------------cCcee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVIN-------------------NFEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 233 (944)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-.. .|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 468999999999999986432 245788999999999999998876311110 11111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
+.+..+....++ ++..+...... -..+++-++|+|++...+....+.+...+......+++
T Consensus 91 lEidaAs~~gVd------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTGID------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCCHH------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 222211111111 11111111111 12356679999999655444566677777655556677
Q ss_pred EEEccch-hhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 313 LVTTRKE-TVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 313 ivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
|++|.+. .+... .+....+.+.+++.++....+.+.+-..+.... .+..+.|++.++|.+.-+..+
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHH
Confidence 7776543 22211 122356788899999999998877654332222 556788999999988554443
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.6e-05 Score=87.14 Aligned_cols=181 Identities=18% Similarity=0.158 Sum_probs=114.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc------c------------c-cccCcee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN------D------------V-INNFEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~------~------------~-~~~F~~~ 233 (944)
.++||.+.-++.+...+..+. -...+.++|+.|+||||+|+.+.+.- . + .+.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999999988888875332 24578899999999999998886510 0 0 0112233
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKIL 313 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 313 (944)
+.++.+....+++ .+.+++..... -..+++-++|+|++..-+....+.+...+....+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 4444433333332 22222222110 113566689999996655556777888887766777777
Q ss_pred EEcc-chhhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 314 VTTR-KETVARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 314 vTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
++|. ...+.... .....+.+.+++.++....+.+.+...+.... ++....|++.++|.+..+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 6664 33443322 23568899999999999999887654433222 556678999999987544
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.24 E-value=3.7e-05 Score=85.17 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=110.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc--c------------------ccCce
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV--I------------------NNFEK 232 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~------------------~~F~~ 232 (944)
.+++|.+..++.+.+++..+. -...+.++|.+|+||||+|+.+.+.-.- . .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 468999999999999885432 3457889999999999999888763110 0 02221
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 233 RIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 233 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
+++..+...... -.+.+++.+... -..+++-++|+|++..-.....+.+...+......+.+
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 222222111111 112222221110 12345568999998544434566677777655556677
Q ss_pred EEEccchh-hhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 313 LVTTRKET-VARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 313 ivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
|++|.+.. +... ......+++.+++.++..+++...+-..+.... ++.+..+++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHH
Confidence 77765433 2222 122457889999999999888876643322122 567788999999998766544
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.24 E-value=1.8e-05 Score=80.97 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=97.7
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
+.+.-+.+||++|+||||||+.+.+..+... ..+|..|....-..-.+.|+++-. -...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH---------------HHHhhh
Confidence 4567788999999999999999998544333 346666654444444444444421 112346
Q ss_pred CCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEE--Eccchhh---hhcccccceEeCCCCChHHHHHHHHHHhc--
Q 042336 278 GKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILV--TTRKETV---ARMMESIDILIIKELSELECWSLFKRFAF-- 350 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~-- 350 (944)
++|.+|++|.|..-+..+-+ .+||.-.+|.-++| ||.+... +.......++.++.|+.++-..++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 88999999999654332222 24566667887776 5555432 22234467999999999999998877322
Q ss_pred -CCCC---CCCch---hHHHHHHHHHHhhCCChh
Q 042336 351 -FGRS---PFECK---QLEEIGRKIVGKCKGLPL 377 (944)
Q Consensus 351 -~~~~---~~~~~---~~~~~~~~i~~~~~GlPl 377 (944)
.... +..++ -...+.+-++..|+|-..
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 11111 123455667777777653
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=2.9e-05 Score=79.71 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=90.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..+.|+|+.|+|||+|++.+++. ....-..+.++++..... ......+.+ . +.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~-~~ 98 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGM----E-QL 98 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHh----h-hC
Confidence 57899999999999999999883 222233456666543100 001111111 1 12
Q ss_pred eEEEeCCCCccC-ccChhh-hHhhhccC-CCC-cEEEEEccch---------hhhhcccccceEeCCCCChHHHHHHHHH
Q 042336 281 FLLVLDDVWTED-YSKWEP-FHNCLMNC-LHG-SKILVTTRKE---------TVARMMESIDILIIKELSELECWSLFKR 347 (944)
Q Consensus 281 ~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 347 (944)
-+|++||+.... ...|+. +...+... ..| .++|+||+.. +....+....++.+.++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 488999994321 134543 22333221 123 3789998754 2333345567999999999999999988
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 348 FAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
++....-.. -+++..-|++.+.|..-++..+
T Consensus 179 ~a~~~~~~l----~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 179 RARLRGFEL----PEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHcCCCC----CHHHHHHHHHhhcCCHHHHHHH
Confidence 664322211 2667777888888876655444
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.4e-05 Score=90.02 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=112.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC--ceeEEEEeCCCCCHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF--EKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~ 250 (944)
.++||-+.-++.|..++.... -...+.++|..|+||||+|+.+.+.-.-.+.. ...-. ..+..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468998888899999886432 34677899999999999999985521100000 00000 01111111111
Q ss_pred HHHHh-----hCCCCCCCCHHHHHHHHHH----HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc-hh
Q 042336 251 IIEAL-----EGSAPNLGELNSLLQHICL----SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK-ET 320 (944)
Q Consensus 251 i~~~l-----~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 320 (944)
|...- ..+......++++...+.. -..++.-++|+|++...+...++.+...+.......++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 10000 0000001112222222211 11345568999999776667777788777765556666666543 33
Q ss_pred hhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 321 VARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 321 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
+... ......+.+.+++.++..+.+.+.+...+.... .+....|++.++|.+.-+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 233578999999999999998877644332222 456678889999987555443
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.8e-05 Score=87.42 Aligned_cols=187 Identities=18% Similarity=0.193 Sum_probs=108.4
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccc-------------------cCcee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVIN-------------------NFEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 233 (944)
.+++|.+.....+...+..+. -...+.++|++|+||||+|+.+.+...-.. .+...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999888888888775332 235678999999999999999977311100 01112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
+.+..+.......+ +.+.+. ... ...+++-++|+|++..-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~~-----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDA-----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHH-----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222211111111 111111 110 12356679999999554434455666666654444555
Q ss_pred EEEccc-hhhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC-hhhHHHHhhhh
Q 042336 313 LVTTRK-ETVARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL-PLAAKTIGSLL 386 (944)
Q Consensus 313 ivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~~~~l 386 (944)
|++|.+ ..+.... .....+.+.+++.++....+.+.+...+.... ++....|++.++|- +.|+..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 544433 3333322 23468899999999999988887644332222 45667788877654 66666665543
No 85
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.7e-05 Score=88.47 Aligned_cols=194 Identities=16% Similarity=0.162 Sum_probs=110.4
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|++..++.+...+..+. -...+.++|+.|+||||+|+.+.+.-. +.-|.... .+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHH
Confidence 468999999999999885432 345788999999999999999876311 11111110 111111111111
Q ss_pred HHhhC-----CCCCCCCHHH---HHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEcc-chhhh
Q 042336 253 EALEG-----SAPNLGELNS---LLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTR-KETVA 322 (944)
Q Consensus 253 ~~l~~-----~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 322 (944)
..... ........++ +...+.. -..+++-++|+|++...+...++.+...+......+.+|++|. ...+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 11000 0000011222 2221111 1123445799999966555667778877776555666665553 33333
Q ss_pred hc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh-hHHHH
Q 042336 323 RM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL-AAKTI 382 (944)
Q Consensus 323 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 382 (944)
.. ......+.+.+++.++....+...+...+.... .+.+..+++.++|.+. |+..+
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 22 223568999999999999888876543322122 4557788999999764 44443
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.7e-05 Score=84.32 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=109.2
Q ss_pred CccccchhHHHHHHHHhccCCcc----cCCceEEEEEEeeCCchHHHHHHHHhcCcccc------------------ccC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE----EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI------------------NNF 230 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~------------------~~F 230 (944)
.+++|-+.-++.|..++..+... ...-..-+.++|+.|+|||++|+.+.+.-.-. +.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999999999654310 00134568899999999999999886521000 001
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHH---HHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccC
Q 042336 231 EKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSL---LQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNC 306 (944)
Q Consensus 231 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~ 306 (944)
....++.... ....++++ ...... -..+++-++|+|++...+....+.+...+...
T Consensus 85 pD~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 1111111110 01112222 221111 11355668889999766666666777777766
Q ss_pred CCCcEEEEEccch-hhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 307 LHGSKILVTTRKE-TVARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 307 ~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
..+..+|++|.+. .+.... .....+.+.+++.++..+.+.+... .. ++.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6677677766653 333222 2256899999999999988875321 11 345678999999999765444
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=1.9e-07 Score=97.16 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=69.7
Q ss_pred cCCCccEEEeeccCCCCcCC--CC-CCCCCcceeeecccccceEeCccccCccCccCcccccccccccccccccc--ccC
Q 042336 802 SLNKLKKLELSFCNKFEIMP--PL-GKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWE--NEK 876 (944)
Q Consensus 802 ~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~--~~~ 876 (944)
..++|+.|.+..|+...+.. .+ .+.+.|+.+.+.+|..+... . .......+|.|+.|.+..+....... ...
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t-L~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--T-LASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--h-HhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 45556666666655433321 12 24556666666555422111 1 11112245555555555443322211 011
Q ss_pred CccccCcccceeeecccccccC-CCCCCCCCCCcCeEEEecCcchhhhcCcCCCCCCCcccCCCCccc
Q 042336 877 NDITIMPQLNSLEIRDCHKLKS-LPHQILGNTTLQMLKIYNCRILEERFDEETGEDWSKISHVPNFKT 943 (944)
Q Consensus 877 ~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~hi~~~~~ 943 (944)
....++..|+.+.+.+||.+.+ .-..+..+++|+.+++.+|..+.+.-.+ +...|.|++++
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v 456 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKV 456 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCcccee
Confidence 1123567888899999988653 2334566888999999999876533111 23567777665
No 88
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=2e-06 Score=67.28 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=40.5
Q ss_pred CcccEEEeccCCCcccccccc-hhhhcccccceeccCcccccccCc-cccCCCcccEEEecCcc
Q 042336 582 TCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCY 643 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~ 643 (944)
++|++|++++|. +..+| ..+..+++|++|++++|.+..+|+ .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~----l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK----LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST----ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC----CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 457777777776 66666 356677777777777777776654 46777777777777764
No 89
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=4.3e-05 Score=75.85 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=65.3
Q ss_pred cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-hhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCC
Q 042336 277 TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVARMM-ESIDILIIKELSELECWSLFKRFAFFGRS 354 (944)
Q Consensus 277 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 354 (944)
.+.+-++|+||+..-....++.+...+......+.+|++|++. .+.... .....+.+.+++.++..+.+.+. +
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--- 168 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--- 168 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---
Confidence 3566789999996655556777888887766667777777643 222221 22468999999999999988876 1
Q ss_pred CCCchhHHHHHHHHHHhhCCChhh
Q 042336 355 PFECKQLEEIGRKIVGKCKGLPLA 378 (944)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~GlPla 378 (944)
.. ++.+..|++.++|.|..
T Consensus 169 -i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CC----HHHHHHHHHHcCCCccc
Confidence 11 45688999999998853
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.3e-05 Score=87.91 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=112.4
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc-------------------ccCcee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI-------------------NNFEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 233 (944)
.++||-+.-++.|..++.... -...+.++|+.|+||||+|+.+.+.-.-. +.|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999995432 34567899999999999999887631111 112223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKIL 313 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 313 (944)
+.+..+....++++ +++++.+... -..++.-++|+|++..-+....+.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 33332222222221 2222221110 113566789999997666667777888777766677777
Q ss_pred EEccc-hhhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 314 VTTRK-ETVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 314 vTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
++|.+ ..+... ......+.+.+++.++....+.+.+-..+.... ++....|++.++|.+.-+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 66543 333222 122467889999999888777666533322222 44566788999998865443
No 91
>PRK09087 hypothetical protein; Validated
Probab=98.17 E-value=1.8e-05 Score=80.28 Aligned_cols=140 Identities=15% Similarity=0.165 Sum_probs=85.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
+.+.|+|..|+|||+|++.+++... ..+++.. .+...++.. +.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~-- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE-- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc--
Confidence 5689999999999999999887421 1133321 111111111 111
Q ss_pred eEEEeCCCCccCccChhhhHhhhccC-CCCcEEEEEccch---------hhhhcccccceEeCCCCChHHHHHHHHHHhc
Q 042336 281 FLLVLDDVWTEDYSKWEPFHNCLMNC-LHGSKILVTTRKE---------TVARMMESIDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
-+|++||+.... ..-+.+...+... ..|..||+|++.. +....+....+++++++++++-.+++.+.+-
T Consensus 89 ~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 278889994321 1112233333221 2467799988732 2333445568999999999999999998874
Q ss_pred CCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 351 FGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
...-... +++..-|++.+.|..-++..
T Consensus 168 ~~~~~l~----~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 168 DRQLYVD----PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HcCCCCC----HHHHHHHHHHhhhhHHHHHH
Confidence 4322222 66677788888887766654
No 92
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.16 E-value=7.1e-06 Score=86.53 Aligned_cols=290 Identities=20% Similarity=0.203 Sum_probs=181.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCc-eeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFE-KRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
..+.+.++|.|||||||++-.+.. +...|. .+.+|....-.+...+.-.....++...... +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 457899999999999999988876 566774 5667777776777777777666666543221 223334555567
Q ss_pred CCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhhhcccccceEeCCCCChH-HHHHHHHHHhcCCCCC-
Q 042336 278 GKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVARMMESIDILIIKELSEL-ECWSLFKRFAFFGRSP- 355 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 355 (944)
++|.++|+||-.+- ...-..+...+-.+.+.-.|+.|+|..... .....+.+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998321 111222334444555566788888865432 33456777777765 7889988776543322
Q ss_pred CCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCHHHHHHHHhhhhhhhhh-------hccchhhHHHhhhhcChHHH
Q 042336 356 FECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTEEWQNILDSEMWQLEE-------FEKDLLAPLLLSYTDLPSRI 428 (944)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-------~~~~i~~~l~~sy~~L~~~~ 428 (944)
.....-.....+|.++.+|.|++|...++..+.= .+.+-...++.....+.+ -.....+.+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1122335667889999999999999988877532 333333333321111111 12457788999999999988
Q ss_pred HHHHhHhcccCCCceecHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhccCCcccccccCe-EEechHHHHHHHHh
Q 042336 429 KRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKEMEMIGEEYFDYLATRSFFQEFVEVDII-YKMHDIVHDFAQFL 507 (944)
Q Consensus 429 k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~~~~L~~~~li~~~~~~~~~-~~mH~lv~~~~~~~ 507 (944)
+--|--++.|...+... ...|.+-|-.-.. .......-+..+++.+++......++. |+.-+-++.|+..+
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999997766544 3345554422100 122333446778888887544433332 55555556665443
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=4.7e-05 Score=78.05 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=91.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..+.|+|..|+|||.|++.+++. ....-..++|++..+ +... .. .+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhCC
Confidence 57899999999999999999873 222223566776432 1111 01 1222222222
Q ss_pred eEEEeCCCCcc-CccChhh-hHhhhccC-CCCcEEEEEccchh--h-------hhcccccceEeCCCCChHHHHHHHHHH
Q 042336 281 FLLVLDDVWTE-DYSKWEP-FHNCLMNC-LHGSKILVTTRKET--V-------ARMMESIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 281 ~LlVlDdvw~~-~~~~~~~-l~~~l~~~-~~gs~iivTtr~~~--v-------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
+||+||+... ....|.. +...+... ..|..||+|++... . ...+....+++++++++++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6889999532 1234544 44444322 24677999887432 1 112233467899999999999999876
Q ss_pred hcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhh
Q 042336 349 AFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGS 384 (944)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 384 (944)
+....-... +++..-|++.+.|..-.+..+-.
T Consensus 179 a~~~~~~l~----~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 179 ASRRGLHLT----DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHHH
Confidence 644321111 56777888888887665544433
No 94
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=6.4e-05 Score=81.79 Aligned_cols=195 Identities=10% Similarity=0.013 Sum_probs=114.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccccc--Cc------e----------eE
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINN--FE------K----------RI 234 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--F~------~----------~~ 234 (944)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||+|+|..+.+.---... .. . .-
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 468999999999999886432 3457889999999999999877652100000 00 0 00
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHh-----cCCceEEEeCCCCccCccChhhhHhhhccCCCC
Q 042336 235 WVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSI-----TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHG 309 (944)
Q Consensus 235 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 309 (944)
|+....++|...+.... ..-++.......++++. .+.+.+ .+++.++|+||+...+....+.+...+..-..+
T Consensus 94 ~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 94 RIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHccCCCCeEEEeccc-ccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 00011111110000000 00000000112234432 233332 356779999999877777788888888776667
Q ss_pred cEEEEEccchh-hhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 310 SKILVTTRKET-VARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 310 s~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
+.+|++|.+.. +.... .....+.+.+++.++..+++....... . ++....++..++|.|..+..+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~----~----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----P----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC----C----HHHHHHHHHHcCCCHHHHHHH
Confidence 77777776543 32222 235689999999999999998763111 1 122267899999999876554
No 95
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=3.6e-05 Score=83.24 Aligned_cols=197 Identities=14% Similarity=0.113 Sum_probs=116.6
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc--ccCceeEEEEeCCCCCHHHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI--NNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
-..++|.++..+.+...+..+. ....+.|+|..|+||||+|..+.+.---. ..+... .....+......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 3468999999999999996432 34578899999999999999887631110 001111 0011111111222
Q ss_pred HHHHH-------hhCC--C-----CCCCCHHHHHHHHHHHh-----cCCceEEEeCCCCccCccChhhhHhhhccCCCCc
Q 042336 250 AIIEA-------LEGS--A-----PNLGELNSLLQHICLSI-----TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGS 310 (944)
Q Consensus 250 ~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 310 (944)
.+... +... . .....++++. .+.+.+ .+++-++|+|++...+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211 1000 0 0112234332 333332 4567799999997777677777888887655555
Q ss_pred EEEEEc-cchhhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHh
Q 042336 311 KILVTT-RKETVARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIG 383 (944)
Q Consensus 311 ~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 383 (944)
.+|++| +...+.... .....+.+.+++.++..+++.+...... .+ ++....|++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~----~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD----GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 555554 433332222 2246899999999999999987432111 11 3446789999999998765543
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2.8e-05 Score=86.61 Aligned_cols=199 Identities=13% Similarity=0.170 Sum_probs=112.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE-eCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS-VSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 251 (944)
.+++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+.-.-...+....|.. +...+..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468899999999988885321 234578999999999999998876321111111111110 00111111111111
Q ss_pred HHHhhC-----CCCCCCCHHHHHHHHHHHh-----cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc-cchh
Q 042336 252 IEALEG-----SAPNLGELNSLLQHICLSI-----TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT-RKET 320 (944)
Q Consensus 252 ~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 320 (944)
...... ........+++.. +.+.+ .+.+-++|+|++..-....++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 110000 0001111233322 22222 3556689999996655557788888887766677766655 4343
Q ss_pred hhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 321 VARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 321 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
+.... .....+++.++++++..+.+...+-..+.... ++.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 43322 22457889999999998888876533222122 56678899999998854433
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.8e-05 Score=87.25 Aligned_cols=181 Identities=16% Similarity=0.186 Sum_probs=109.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc-------------------ccCcee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI-------------------NNFEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 233 (944)
.+++|.+.-++.+..++.... -...+.++|..|+||||+|+.+.+.-.-. +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999886432 24567899999999999999987631110 112122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKIL 313 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 313 (944)
+++..+....++. ++++++..... -..+++-++|+|++...+....+.+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 2232221111111 11222211100 113567799999996655556677777777765666666
Q ss_pred EEccc-hhhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 314 VTTRK-ETVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 314 vTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
++|.+ ..+... ......+++.+++.++..+.+.+.+...+.... ++..+.|++.++|.+--+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 66643 333221 122468899999999999888776543322122 455677899999987533
No 98
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.10 E-value=4.9e-06 Score=88.42 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=59.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC--CHHHHHHHHHHHhhCCCCCCCCHHH------HHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF--DEYRVAKAIIEALEGSAPNLGELNS------LLQH 271 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~------~~~~ 271 (944)
-+...|+|++|+||||||+++|++.... +|+..+||.+++.. .+.++++.+...+-....+...... ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999964443 89999999999887 7777777776322212211111111 1111
Q ss_pred HHH-HhcCCceEEEeCCC
Q 042336 272 ICL-SITGKKFLLVLDDV 288 (944)
Q Consensus 272 l~~-~l~~k~~LlVlDdv 288 (944)
-.. .-.|++++|++|++
T Consensus 248 Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHcCCCEEEEEECh
Confidence 111 13689999999999
No 99
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=7.6e-05 Score=79.61 Aligned_cols=200 Identities=14% Similarity=0.089 Sum_probs=123.7
Q ss_pred cCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH
Q 042336 171 NVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
.+..++||+.|++.+.+++...-. ....+-+.|.|-+|.|||.+...++.+..-...=..++++++..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 455789999999999999875432 345677899999999999999999986332222235678887776778889999
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHhcCC--ceEEEeCCCCccCccChhhhHhhhccC-CCCcEEEEEccch--hhhhc-
Q 042336 251 IIEALEGSAPNLGELNSLLQHICLSITGK--KFLLVLDDVWTEDYSKWEPFHNCLMNC-LHGSKILVTTRKE--TVARM- 324 (944)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~--~v~~~- 324 (944)
|...+...........+....+.++.++. .+|+|+|.+..-....-..+...|.+. -+++|+|+.---. +.++.
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 98888322111111145556666655443 589999988432222223344444333 2566666543211 11111
Q ss_pred --------ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC
Q 042336 325 --------MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL 375 (944)
Q Consensus 325 --------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 375 (944)
......+..+|.+.++-.++|..+.-..... ..+....+-+++|+.|.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~---~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS---IFLNAAIELCARKVAAP 361 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc---ccchHHHHHHHHHhccC
Confidence 1224678889999999999999886433221 12223344455555443
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=7.3e-05 Score=86.38 Aligned_cols=197 Identities=14% Similarity=0.131 Sum_probs=113.8
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCce--eEEEEeCCCCCHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEK--RIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~ 250 (944)
.+++|.+..++.|...+..+. -..-+.++|..|+||||+|+.+.+.-.-...... ..+-.+.. -.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHH
Confidence 468999999999999986432 3456889999999999999999773211110000 00000000 011111
Q ss_pred HHHHhhC-----CCCCCCCHHHHH---HHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc-cchh
Q 042336 251 IIEALEG-----SAPNLGELNSLL---QHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT-RKET 320 (944)
Q Consensus 251 i~~~l~~-----~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 320 (944)
|...-.. .......++++. ..+.. -..+++-++|+|++...+....+.+...+..-...+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111000 000111222222 22211 123456689999996655556777887777766677776655 3333
Q ss_pred hhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 321 VARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 321 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
+...+ .....+.+..++.++....+.+.+-..+.... .+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 33222 23468899999999999999887643332222 456778999999988655443
No 101
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=3.5e-06 Score=99.32 Aligned_cols=92 Identities=22% Similarity=0.343 Sum_probs=72.1
Q ss_pred cccEEEeccCCCcccccccchhhhcccccceeccCccccc-ccCccccCCCcccEEEecCccCCcccCcccccCCCCcee
Q 042336 583 CLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIK-ELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHL 661 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 661 (944)
.++.|+|+++.. ...+|..+++|.+|++|+|++|.+. .+|..++++.+|++|+|++|.....+|..+++|++|++|
T Consensus 419 ~v~~L~L~~n~L---~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGL---RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCc---cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 367788888874 3467888888888888888888876 788888888888888888887556788888888888888
Q ss_pred eccccccc-cccccccC
Q 042336 662 IFDVNFVE-YMPKGIER 677 (944)
Q Consensus 662 ~l~~~~~~-~lp~~i~~ 677 (944)
++++|.+. .+|..++.
T Consensus 496 ~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 496 NLNGNSLSGRVPAALGG 512 (623)
T ss_pred ECcCCcccccCChHHhh
Confidence 88776554 56766554
No 102
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.08 E-value=2.4e-06 Score=96.18 Aligned_cols=180 Identities=22% Similarity=0.323 Sum_probs=109.9
Q ss_pred hccCCCCeeEEEEecCCcccccchhHHHHhhcC-CcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCcc
Q 042336 549 FMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQF-TCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDT 627 (944)
Q Consensus 549 ~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~-~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~ 627 (944)
.+...+.+..|.+.++.... ++.....+ ++|+.|+++++. +..+|..++.++.|+.|++++|.+..+|..
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~----i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNK----IESLPSPLRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred hhhcccceeEEecCCccccc-----Cccccccchhhcccccccccc----hhhhhhhhhccccccccccCCchhhhhhhh
Confidence 33445667777777665321 22223344 277888888777 777777777888888888888888877777
Q ss_pred ccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCc
Q 042336 628 CCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLR 707 (944)
Q Consensus 628 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 707 (944)
.+.+.+|+.|++++|. +..+|..+..+..|..|.++.|.+..++..+.+++++..+. ...+.... ....++.+.
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~----l~~n~~~~-~~~~~~~l~ 255 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE----LSNNKLED-LPESIGNLS 255 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc----cCCceeee-ccchhcccc
Confidence 7677788888888876 77777776666777778777765556666666666666665 12211111 123344444
Q ss_pred CcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCC
Q 042336 708 QLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTD 753 (944)
Q Consensus 708 ~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 753 (944)
.++.|.. .-..+ ... ..+....+++.|+++.+.+..
T Consensus 256 ~l~~L~~--s~n~i---~~i-----~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 256 NLETLDL--SNNQI---SSI-----SSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccceecc--ccccc---ccc-----ccccccCccCEEeccCccccc
Confidence 4443321 10111 111 125667788999998875443
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.07 E-value=0.0001 Score=74.52 Aligned_cols=184 Identities=13% Similarity=0.149 Sum_probs=100.8
Q ss_pred Cccccch-hHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC--ceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRD-EEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF--EKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~-~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~ 249 (944)
..++|.. +..-.....+....+ .....+.|+|..|+|||.|.+++++. ..... ..+++++ ..++..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~ 77 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIR 77 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHH
Confidence 3445653 333344444443322 23445789999999999999999984 33322 2345553 446666
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc-cChhh-hHhhhccC-CCCcEEEEEccchh------
Q 042336 250 AIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDY-SKWEP-FHNCLMNC-LHGSKILVTTRKET------ 320 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-~~~~~-l~~~l~~~-~~gs~iivTtr~~~------ 320 (944)
.+...+... ... .+...++ .-=+|++||+..-.. ..|.. +...+... ..|.+||+|++...
T Consensus 78 ~~~~~~~~~-----~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 78 EFADALRDG-----EIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHTT-----SHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHcc-----cch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 666665441 122 2333334 345788999954321 22333 22222221 24678999996432
Q ss_pred ---hhhcccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 321 ---VARMMESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 321 ---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
....+...-++++.+.++++..+++.+++...... --++++.-|++.+.+..-.+..
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHH
Confidence 22233445689999999999999999887543332 2256677777777665544433
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00013 Score=83.82 Aligned_cols=198 Identities=13% Similarity=0.134 Sum_probs=114.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+.-++.|..++..+. -...+.++|..|+||||+|+.+.+.-.-....+ +-.+... ...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 468999999999999986432 345678999999999999999886311000000 0000000 0011111
Q ss_pred HH---------hhC-CCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc-cchh
Q 042336 253 EA---------LEG-SAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT-RKET 320 (944)
Q Consensus 253 ~~---------l~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 320 (944)
.. +.. ......++.++...+.. -..+++-++|+|++..-+....+.+...+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 000 00011112222222211 123566699999997666667778888887766666666655 4343
Q ss_pred hhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh-hHHHHhhhh
Q 042336 321 VARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL-AAKTIGSLL 386 (944)
Q Consensus 321 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~~~l 386 (944)
+... ......+.+.+++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3332 223578999999999998888776543332222 4556778899999874 444444443
No 105
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=4.7e-06 Score=65.17 Aligned_cols=58 Identities=28% Similarity=0.391 Sum_probs=50.2
Q ss_pred cccceeccCcccccccCc-cccCCCcccEEEecCccCCcccCc-ccccCCCCceeeccccc
Q 042336 609 IHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDVNF 667 (944)
Q Consensus 609 ~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 667 (944)
++|++|++++|.+..+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999985 58899999999999988 677764 67999999999997765
No 106
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.3e-07 Score=93.82 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCceEEEeeCCC----CCCChhhhcCCCccEEEeeccCCCCc--CCCCCCCCCcceeeeccccc
Q 042336 781 PNLESLDVWKYRG----ETLPSWIMSLNKLKKLELSFCNKFEI--MPPLGKLPSLELLEVFALQS 839 (944)
Q Consensus 781 ~~L~~L~l~~~~~----~~lp~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~ 839 (944)
++|+.|+|+||.- ..+..-...+++|..|+|++|..++. ...+.+++.|++|.+++|..
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 4677777777652 11111222678888888887765543 22256677888888887763
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.0001 Score=82.89 Aligned_cols=166 Identities=19% Similarity=0.161 Sum_probs=101.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccC--ceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNF--EKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
...+.|+|..|+|||+|++++.+. +.... ..+++++ ..++...+...+.... .....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 346889999999999999999883 32211 2334443 3467777776665311 11223333333
Q ss_pred CCceEEEeCCCCccCc-cCh-hhhHhhhccC-CCCcEEEEEccchh---------hhhcccccceEeCCCCChHHHHHHH
Q 042336 278 GKKFLLVLDDVWTEDY-SKW-EPFHNCLMNC-LHGSKILVTTRKET---------VARMMESIDILIIKELSELECWSLF 345 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~~-~~~-~~l~~~l~~~-~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 345 (944)
..-+||+||+..... ..+ +.+...+... ..|..||+|+.... +...+...-++.+++++.++..+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 345889999954321 122 2344333322 24557888875331 2223344568889999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHh
Q 042336 346 KRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIG 383 (944)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 383 (944)
.+++-..+.. ..--+++..-|++.++|.|-.+.-+.
T Consensus 285 ~~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 285 KKEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9887432210 01226778889999999998775554
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.04 E-value=3.5e-05 Score=85.12 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=99.5
Q ss_pred CCccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDE 244 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 244 (944)
..++.|+++.++++.+.+..+-.. +-..++-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 346899999999998877432110 0123456889999999999999999984 33333 22221
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH-hcCCceEEEeCCCCcc-----------CccChhhhHhhh---cc--CC
Q 042336 245 YRVAKAIIEALEGSAPNLGELNSLLQHICLS-ITGKKFLLVLDDVWTE-----------DYSKWEPFHNCL---MN--CL 307 (944)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l---~~--~~ 307 (944)
..+..... + ........+.+. -...+.+|++||++.- +......+...+ .. ..
T Consensus 190 ~~l~~~~~----g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKYI----G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHhh----h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 11111100 0 011122222222 2356789999998532 011112233332 21 12
Q ss_pred CCcEEEEEccchhhhh-c----ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh
Q 042336 308 HGSKILVTTRKETVAR-M----MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 308 ~gs~iivTtr~~~v~~-~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 376 (944)
.+.+||.||....... . ..-...+.+...+.++..++|..++...... ..-. ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 4667888887543211 1 1124578899999999999999877543221 1112 345667777754
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00014 Score=80.71 Aligned_cols=181 Identities=19% Similarity=0.219 Sum_probs=105.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc------cccCceeE-EEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV------INNFEKRI-WVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~ 245 (944)
.+++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+.+.-.- ...|...+ -+........+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 46799999999999998543 23468889999999999999998763111 01121111 11111111111
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEcc-chhhhhc
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTR-KETVARM 324 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~ 324 (944)
-.+.+++++... -..+++-++|+|++.......++.+...+......+.+|++|. ...+...
T Consensus 92 -~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 -DIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred -HHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111112211100 1134556899999854444456666666655444556665553 3222221
Q ss_pred -ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 325 -MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 325 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
......+++.++++++....+...+...+.... ++..+.+++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 122457899999999999888887654332222 566778888999876543
No 110
>PLN03150 hypothetical protein; Provisional
Probab=98.02 E-value=8.8e-06 Score=95.99 Aligned_cols=105 Identities=17% Similarity=0.310 Sum_probs=86.6
Q ss_pred CeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCccccc-ccCccccCCCc
Q 042336 555 KLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIK-ELPDTCCELFN 633 (944)
Q Consensus 555 ~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~-~lP~~i~~L~~ 633 (944)
.++.|.+.++... ..++..+..+++|+.|+|++|.+ ...+|..++.+.+|++|+|++|.+. .+|+.+++|.+
T Consensus 419 ~v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l---~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSI---RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcc---cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 4778888877642 22444588999999999999984 3478999999999999999999987 89999999999
Q ss_pred ccEEEecCccCCcccCcccccC-CCCceeecccc
Q 042336 634 LQTIEIEGCYNLNRLPQGVGKL-VNLRHLIFDVN 666 (944)
Q Consensus 634 L~~L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~~ 666 (944)
|++|+|++|.....+|..++.+ .++..+++.+|
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 9999999998667899888764 56777877655
No 111
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.01 E-value=3.2e-07 Score=93.46 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=59.6
Q ss_pred HHHhhcCCcccEEEeccCCCcccc-cccchhhhcccccceeccCccc----ccccCcc-------ccCCCcccEEEecCc
Q 042336 575 QVLFNQFTCLRALKITRNSKENSI-YEIPKEIQKLIHLRYFKLHWLE----IKELPDT-------CCELFNLQTIEIEGC 642 (944)
Q Consensus 575 ~~~~~~~~~Lr~L~L~~~~~~~~~-~~lp~~i~~l~~Lr~L~Ls~~~----i~~lP~~-------i~~L~~L~~L~L~~~ 642 (944)
......+..+..|+|+||.+...- ..+-+.+.+.+.||.-++|+-. ..++|+. +-.+++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 334677788999999999842110 1134556777889998888744 2255544 345568899999887
Q ss_pred cCCcccC----cccccCCCCceeecccccc
Q 042336 643 YNLNRLP----QGVGKLVNLRHLIFDVNFV 668 (944)
Q Consensus 643 ~~l~~lp----~~i~~L~~L~~L~l~~~~~ 668 (944)
-.-...+ .-|.++..|+||.+.+|.+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 6322222 2335677788887765544
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.00 E-value=6.2e-05 Score=75.94 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=115.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEE-EEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIW-VSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i 251 (944)
.+++|.+..++.+.+.+.. ........+|++|.|||+-|..+++..--.+.|.+++- .++|..-... +.+.-
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 4688999999999999864 24578889999999999999888774322455655542 3444322211 11110
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHh--cCCc-eEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhh-hhc-cc
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSI--TGKK-FLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETV-ARM-ME 326 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~-~~ 326 (944)
+ .+...+........ ..++ -.+|||+......+.|..++..+.+....++.|+.+..-+. ... ..
T Consensus 109 i----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 I----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred h----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0 00011100000000 1223 38899999887788999999999887777776666554322 111 12
Q ss_pred ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh
Q 042336 327 SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 327 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 376 (944)
...-|..++|.+++...-++..+-.++...+ .+..+.|++.++|-=
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcH
Confidence 2356889999999999988888765554444 556677899998843
No 113
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00013 Score=87.28 Aligned_cols=180 Identities=12% Similarity=0.105 Sum_probs=111.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC---------------------c
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF---------------------E 231 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---------------------~ 231 (944)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-.... .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 368999999999999986432 23567899999999999999987632111100 0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH-HHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCc
Q 042336 232 KRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHIC-LSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGS 310 (944)
Q Consensus 232 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 310 (944)
.++++.......++ ++.++...+. .-..++.-++|||++...+...++.|...+..-...+
T Consensus 90 dv~eidaas~~~Vd------------------~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 90 DVTEIDAASHGGVD------------------DARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred cEEEecccccCCHH------------------HHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 11122111111111 1112211111 1224566689999997777777888888888766677
Q ss_pred EEEEEccc-hhhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 311 KILVTTRK-ETVARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 311 ~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
.+|++|.+ ..+...+ .....|.+..++.++..+++.+..-..+.... .+....|++.++|.+..+
T Consensus 152 ~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 76666643 3343322 23578999999999998888776433222122 445677899999988443
No 114
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.0002 Score=83.86 Aligned_cols=195 Identities=14% Similarity=0.170 Sum_probs=112.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+.-++.|..++.... -...+.++|..|+||||+|+.+.+.-....... -...++.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988885432 245678999999999999999986311000000 001111112222222
Q ss_pred HHhhCC-----CCCCCCHHHHHH---HHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc-hhhh
Q 042336 253 EALEGS-----APNLGELNSLLQ---HICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK-ETVA 322 (944)
Q Consensus 253 ~~l~~~-----~~~~~~~~~~~~---~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 322 (944)
...... .......+.+.. .+.. -..+++-++|+|++..-+....+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211110 001112222221 1111 11355678999999654445566777777665566677666643 3332
Q ss_pred hcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 323 RMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 323 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
... .....+.+..++.++....+...+...+.... .+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 221 22457889999999998888877644332222 456778999999988655443
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00014 Score=83.33 Aligned_cols=198 Identities=14% Similarity=0.193 Sum_probs=112.6
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+..++.|...+.... -...+.++|..|+||||+|+.+.+.-.-...... ..++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 367898888888888885321 2457788999999999999998874211100000 0011111111111
Q ss_pred HHhhC-----CCCCCCCHHH---HHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc-hhhh
Q 042336 253 EALEG-----SAPNLGELNS---LLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK-ETVA 322 (944)
Q Consensus 253 ~~l~~-----~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 322 (944)
..-.. .......++. +...+.. -..+++-+||+|++...+....+.|...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 10000 0000011121 1111111 12456679999999665555667777777654455666665544 3333
Q ss_pred hcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh-hhHHHHhhhh
Q 042336 323 RMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP-LAAKTIGSLL 386 (944)
Q Consensus 323 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~~l 386 (944)
..+ .....+++.+++.++....+...+........ .+.++.|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 22467899999999999988876654332222 556778899999965 5666665444
No 116
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.97 E-value=0.00018 Score=74.77 Aligned_cols=167 Identities=15% Similarity=0.230 Sum_probs=105.7
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
.+.|.+|+.++..+..++...+. .-+..|.|+|..|.|||.+.+++++... ...+|+++-+.++..-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 46788999999999998865432 3456779999999999999999999542 235899999999999999999
Q ss_pred HHHhhCCCCCCC--C-----HHHHHHHHHH--Hh--cCCceEEEeCCCCccCccChhhh-Hhh-hc--c-CCCCcEEEEE
Q 042336 252 IEALEGSAPNLG--E-----LNSLLQHICL--SI--TGKKFLLVLDDVWTEDYSKWEPF-HNC-LM--N-CLHGSKILVT 315 (944)
Q Consensus 252 ~~~l~~~~~~~~--~-----~~~~~~~l~~--~l--~~k~~LlVlDdvw~~~~~~~~~l-~~~-l~--~-~~~gs~iivT 315 (944)
+.+......+.. + .......+.+ .. +++.++||||++.. ..+.+.+ ... +. . .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 999962221111 1 1112222222 12 24689999999932 2233331 111 11 1 1122334444
Q ss_pred ccchh---hhhcccc--cceEeCCCCChHHHHHHHHHH
Q 042336 316 TRKET---VARMMES--IDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 316 tr~~~---v~~~~~~--~~~~~l~~L~~~~~~~lf~~~ 348 (944)
+-... ....+++ ..++..+.-+.++..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43222 2222344 346677888999999988663
No 117
>PF14516 AAA_35: AAA-like domain
Probab=97.96 E-value=0.0017 Score=70.44 Aligned_cols=202 Identities=12% Similarity=0.097 Sum_probs=119.2
Q ss_pred cCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC-----CCHH
Q 042336 171 NVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP-----FDEY 245 (944)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 245 (944)
+.+..|+|...-+++.+.+..+ -..+.|.|+-.+|||+|...+.+. .+..=..++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHH
Confidence 4455678986677777777532 357899999999999999998874 3222234567776542 2456
Q ss_pred HHHHHHHHHhhCCCCC-----------CCCHHHHHHHHHHHh---cCCceEEEeCCCCccC--ccChhhhHhhhccC---
Q 042336 246 RVAKAIIEALEGSAPN-----------LGELNSLLQHICLSI---TGKKFLLVLDDVWTED--YSKWEPFHNCLMNC--- 306 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~k~~LlVlDdvw~~~--~~~~~~l~~~l~~~--- 306 (944)
.+++.+...+...-.- ..........+.+.+ .+++.+|++|++..-- ....+++...++..
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 5665555555432110 111122222333322 2689999999994321 11223344433321
Q ss_pred -C----CCcEEEEEccchh---hhhc----ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCC
Q 042336 307 -L----HGSKILVTTRKET---VARM----MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKG 374 (944)
Q Consensus 307 -~----~gs~iivTtr~~~---v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 374 (944)
. ..+-.++...+.. ..+. ......+.|++++.+|...|...+-.. .. ....++|...++|
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCC
Confidence 1 1122222222211 1111 122458899999999999999876322 11 2227889999999
Q ss_pred ChhhHHHHhhhhcCC
Q 042336 375 LPLAAKTIGSLLRFK 389 (944)
Q Consensus 375 lPlai~~~~~~l~~~ 389 (944)
+|..+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999654
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00027 Score=82.24 Aligned_cols=188 Identities=15% Similarity=0.209 Sum_probs=108.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEe-------CCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSV-------SDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v-------s~~~~~~ 245 (944)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++.---....+ .+-.+ ...++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHHHhhcCCCcEE
Confidence 468999999999999986432 345678999999999999998876311000000 00000 0000000
Q ss_pred HHHHHHHHHhhCCC-CCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc-cchhhh
Q 042336 246 RVAKAIIEALEGSA-PNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT-RKETVA 322 (944)
Q Consensus 246 ~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 322 (944)
.+.+.. ....+++++...+.. -..+++-++|+|++.......+..+...+......+.+|++| +...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000000 001112222222221 123666799999996655566777777777655555555554 444443
Q ss_pred hc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 323 RM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 323 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
.. ......+.+.+++.++....+...+-..+.... .+.++.|++.++|.+.-+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 32 233468999999999999888876533322122 455778999999977543
No 119
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00032 Score=79.53 Aligned_cols=183 Identities=15% Similarity=0.190 Sum_probs=108.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc--c-----------------ccCcee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV--I-----------------NNFEKR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~-----------------~~F~~~ 233 (944)
.+++|.+.-++.+..++.... -...+.++|+.|+||||+|+.++..-.- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 358899999999999995432 2356678999999999999988763110 0 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
+++..+.....+ +...+...+.. -..+++-++|+|++..-.....+.+...+........+
T Consensus 91 ~eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222111111111 11122222211 12456779999999654444566677777665555666
Q ss_pred EEEc-cchhhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 313 LVTT-RKETVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 313 ivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
|++| +...+... ......+.+.+++.++....+.+.+-..+...+ .+.+..|++.++|.+..+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6555 43333322 222457899999999999888876543332222 455677889999977655444
No 120
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.93 E-value=4.7e-07 Score=94.33 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=83.6
Q ss_pred cCCCccEEEeeccCCCCcCC--CC-CCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCc
Q 042336 802 SLNKLKKLELSFCNKFEIMP--PL-GKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKND 878 (944)
Q Consensus 802 ~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~ 878 (944)
.+..|+.|+.++|....+.+ .+ .+.++|+.|.+.+|..+...+....+ ...+.|+.|.+.++.-..... ....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~---rn~~~Le~l~~e~~~~~~d~t-L~sl 367 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG---RNCPHLERLDLEECGLITDGT-LASL 367 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh---cCChhhhhhcccccceehhhh-Hhhh
Confidence 57788889988887655432 23 46799999999999876555433332 356777777776654332221 1112
Q ss_pred cccCcccceeeecccccccCC-----CCCCCCCCCcCeEEEecCcchhhhcC
Q 042336 879 ITIMPQLNSLEIRDCHKLKSL-----PHQILGNTTLQMLKIYNCRILEERFD 925 (944)
Q Consensus 879 ~~~l~~L~~L~l~~c~~l~~l-----p~~~~~l~~L~~L~l~~c~~l~~~~~ 925 (944)
..++|.|+.|.++.|..++.. ...-.++..|..+++++||.+++...
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 347999999999999887653 44456678899999999999887644
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00035 Score=79.04 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=112.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc--ccc----------------Cc-ee
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV--INN----------------FE-KR 233 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~----------------F~-~~ 233 (944)
.+++|-+.-++.+...+..+ .-..+..++|..|+||||+|+.+.+.--- ... +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 46899999999999988543 23456789999999999999987653100 000 11 11
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH----HhcCCceEEEeCCCCccCccChhhhHhhhccCCCC
Q 042336 234 IWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL----SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHG 309 (944)
Q Consensus 234 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 309 (944)
+.+..+... ..+.+...+.. -..+++-++|+|++...+....+.+...+......
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 122111111 12222222211 01255668999999766666677788887776667
Q ss_pred cEEEEEccch-hhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 310 SKILVTTRKE-TVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 310 s~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
+++|++|.+. .+... ......+++.+++.++....+.+.+-..+.... ++.++.|++.++|.+.-+...
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 7777777553 22211 122468999999999999988876544332222 566788999999998655444
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00029 Score=81.58 Aligned_cols=197 Identities=13% Similarity=0.163 Sum_probs=110.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE-eCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS-VSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 251 (944)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.-.-...++...|-. +...+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999998885432 245688999999999999988876311111111001110 00111111111111
Q ss_pred HHHhhC-----CCCCCCCHHHHHHHHHHH----hcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc-cchhh
Q 042336 252 IEALEG-----SAPNLGELNSLLQHICLS----ITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT-RKETV 321 (944)
Q Consensus 252 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 321 (944)
...-.. ........+++...+... ..+.+-++|+|++...+....+.+...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110000 000111123333222111 24556689999996655556777888877765566665555 43334
Q ss_pred hhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhh
Q 042336 322 ARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLA 378 (944)
Q Consensus 322 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 378 (944)
... ......+++.+++.++....+.+.+-..+.... .+.++.|++.++|..--
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRD 224 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHH
Confidence 332 233578999999999988888776543222122 56678899999996653
No 123
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=3.4e-05 Score=82.65 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=61.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC--CCHHHHHHHHHHHhhCCCCCCCCHH------HHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP--FDEYRVAKAIIEALEGSAPNLGELN------SLLQ 270 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 270 (944)
.-..++|+|.+|+|||||++.+++.... .+|+..+||.+.+. .++.++++.+...+-....+..... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3457899999999999999999995333 37999999999866 7899999998554433222211111 1111
Q ss_pred HHHH-HhcCCceEEEeCCCC
Q 042336 271 HICL-SITGKKFLLVLDDVW 289 (944)
Q Consensus 271 ~l~~-~l~~k~~LlVlDdvw 289 (944)
.... .-+|++.+|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 1111 236899999999993
No 124
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.89 E-value=4.8e-05 Score=82.97 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=76.6
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.++++.++..+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..+++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998632 4578899999999999999988544445678889999999888777654321
Q ss_pred HHhhCCCCCCCCH-HHHHHHHHHHh--cCCceEEEeCCCCccCccC-hhhhHhhhc
Q 042336 253 EALEGSAPNLGEL-NSLLQHICLSI--TGKKFLLVLDDVWTEDYSK-WEPFHNCLM 304 (944)
Q Consensus 253 ~~l~~~~~~~~~~-~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~-~~~l~~~l~ 304 (944)
.......-. ....+.+.... .++++++|+|++-..+... +..+...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 110010000 11122222222 2478999999995544332 444444443
No 125
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.2e-05 Score=57.28 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=20.6
Q ss_pred ccceeccCcccccccCccccCCCcccEEEecCccCCccc
Q 042336 610 HLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRL 648 (944)
Q Consensus 610 ~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~l 648 (944)
+|++|++++|.|+.+|..+++|++|++|++++|. +..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 4555666666666555555666666666666654 4433
No 126
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.86 E-value=0.00056 Score=76.87 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=92.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccC--ceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNF--EKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
...+.|+|..|+|||+|++++++. +.... ..++++++ .++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 356889999999999999999984 33332 23455543 34455555555422 1222 222332
Q ss_pred CCceEEEeCCCCccCcc-Ch-hhhHhhhccC-CCCcEEEEEccch-h--------hhhcccccceEeCCCCChHHHHHHH
Q 042336 278 GKKFLLVLDDVWTEDYS-KW-EPFHNCLMNC-LHGSKILVTTRKE-T--------VARMMESIDILIIKELSELECWSLF 345 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~~~-~~-~~l~~~l~~~-~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf 345 (944)
+ .-+|||||+...... .+ +.+...+... ..|..+|+|+... . +...+....++.+.+.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348899999542111 11 2233333221 2355688887642 1 1122233457899999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 346 KRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
.+.+........ +++...|++.+.|.+-.+
T Consensus 278 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 278 QKKAEEEGLELP----DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHH
Confidence 988754322222 566777888888876543
No 127
>PRK06620 hypothetical protein; Validated
Probab=97.85 E-value=0.00031 Score=70.62 Aligned_cols=132 Identities=12% Similarity=0.122 Sum_probs=78.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5689999999999999999887432 1 1111 00000 0 001 223
Q ss_pred eEEEeCCCCccCccChh--hhHhhhccC-CCCcEEEEEccchh-------hhhcccccceEeCCCCChHHHHHHHHHHhc
Q 042336 281 FLLVLDDVWTEDYSKWE--PFHNCLMNC-LHGSKILVTTRKET-------VARMMESIDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
-++++||+.. |. .+...+... ..|..||+|++... ....+...-+++++++++++-..++.+.+.
T Consensus 87 d~lliDdi~~-----~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 87 NAFIIEDIEN-----WQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CEEEEecccc-----chHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 5788999942 22 222222111 34678999987432 222234455899999999998888877764
Q ss_pred CCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 351 FGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
...-.-. +++.+-|++.+.|.--.+
T Consensus 162 ~~~l~l~----~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 162 ISSVTIS----RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HcCCCCC----HHHHHHHHHHccCCHHHH
Confidence 2211111 566777888777765444
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.83 E-value=0.00018 Score=87.33 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=85.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccccc------CceeEE-EEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINN------FEKRIW-VSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~w-v~vs~~~~~~ 245 (944)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+.+. +... .+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 468999999999999986542 234569999999999999999873 2111 123333 22221
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHh--cCCceEEEeCCCCccC-------ccChh-hhHhhhccCCCCcEEEEE
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICLSI--TGKKFLLVLDDVWTED-------YSKWE-PFHNCLMNCLHGSKILVT 315 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~-------~~~~~-~l~~~l~~~~~gs~iivT 315 (944)
+........+.+...+.+.+.+ .+++.+|++|++..-. ..+.. .+...+..+ .-++|-|
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Iga 322 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAA 322 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEe
Confidence 0000001111111222222212 2578999999984321 11111 233333332 3456666
Q ss_pred ccchhhhhcc-------cccceEeCCCCChHHHHHHHHHH
Q 042336 316 TRKETVARMM-------ESIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 316 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
|...+..... .....+.+.+++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 6654332211 12458999999999999997544
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00038 Score=78.39 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=106.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc---------------------ccCc
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI---------------------NNFE 231 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~F~ 231 (944)
.+++|.+..++.+..++..+. -...+.++|..|+||||+|+.+.+.-.-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999885432 24667899999999999999887631100 0111
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCc
Q 042336 232 KRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGS 310 (944)
Q Consensus 232 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 310 (944)
.+++........+ ++.++...+.. ...+.+-++|+|++........+.+...+.......
T Consensus 92 -~~~i~g~~~~gid------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGIE------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCHH------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 1111111111111 11111111111 123667789999985544445566777776655566
Q ss_pred EEEEEccc-hhhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 311 KILVTTRK-ETVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 311 ~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
.+|++|.. ..+... ......+++.++++++....+...+-..+.... ++.++.|++.++|.+--+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDA 219 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 67766643 323222 122467899999999998888876543222122 556788999999976433
No 130
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00043 Score=80.75 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=111.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcc---------------------ccccCc
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDND---------------------VINNFE 231 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---------------------~~~~F~ 231 (944)
.+++|.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.-. ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999985432 345688999999999999988766311 011232
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcE
Q 042336 232 KRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSK 311 (944)
Q Consensus 232 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 311 (944)
. ..+..+....++.+ +.+++++... -..+++-++|+|++..-+...++.+...+..-...+.
T Consensus 92 ~-~~ld~~~~~~vd~I-r~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDDI-RNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHHH-HHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1 12222211111111 1111211110 1134566889999976666677788888877666677
Q ss_pred EEEEc-cchhhhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 312 ILVTT-RKETVARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 312 iivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
+|++| +...+... .....++++.+++.++....+...+-..+.... .+.+..|++.++|..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 66655 44444333 233568999999999999888876543332222 456778999999977544
No 131
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.82 E-value=0.00051 Score=70.76 Aligned_cols=204 Identities=21% Similarity=0.192 Sum_probs=121.6
Q ss_pred Cccccch---hHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc----ccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRD---EEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI----NNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~ 245 (944)
+.+||.. +.++++.+++..+. .....-+.|||..|+|||++++++.+..-.. ..--.++.|.+...++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3455654 34556666665543 3456679999999999999999998642111 111257778888999999
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC-CceEEEeCCCCcc---CccChhhhHhh---hccCCCCcEEEEEccc
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICLSITG-KKFLLVLDDVWTE---DYSKWEPFHNC---LMNCLHGSKILVTTRK 318 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~---~~~~~~~l~~~---l~~~~~gs~iivTtr~ 318 (944)
.+...|+.+++...........+.......++. +--+||+|.+.+- ....-..+... +.+.-.=+-|.+-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998876666666655555555543 4458899999542 11112223333 3233344556666664
Q ss_pred hhhhhcccc-----cceEeCCCCCh-HHHHHHHHHHh--cCCCCCCCchhHHHHHHHHHHhhCCChhhHH
Q 042336 319 ETVARMMES-----IDILIIKELSE-LECWSLFKRFA--FFGRSPFECKQLEEIGRKIVGKCKGLPLAAK 380 (944)
Q Consensus 319 ~~v~~~~~~-----~~~~~l~~L~~-~~~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 380 (944)
.--+-..+. ..++.++.-.. ++...|+.... ..-..+.. -..+++++.|...++|+.=-+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHH
Confidence 322221111 23455554443 45555654432 22222211 2337789999999999864443
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00056 Score=79.78 Aligned_cols=196 Identities=15% Similarity=0.174 Sum_probs=111.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++|.+..++.|..++.... -...+.++|..|+||||+|+.+++.-.-. ..+.. ....+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHh
Confidence 368899999999999886432 23467899999999999999998742111 00000 001111112222222
Q ss_pred HHhhC-----CCCCCCCHHHHHHHHHH----HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc-hhhh
Q 042336 253 EALEG-----SAPNLGELNSLLQHICL----SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK-ETVA 322 (944)
Q Consensus 253 ~~l~~-----~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 322 (944)
..... ........+.+...+.. -..+++-++|+|++...+...++.+...+..-.....+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11110 00011122222222211 11355668999999665556677788777765555666655543 3332
Q ss_pred hcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 323 RMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 323 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
... .....+.+..++.++....+...+...+.... .+.+..|++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 222 22467888899999888877766543222222 355778999999988655443
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.81 E-value=0.00043 Score=75.18 Aligned_cols=148 Identities=15% Similarity=0.177 Sum_probs=85.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+...+.+..++..+ .-..++.++|.+|+||||+|+.+++. ... ....++.+. ... ...+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccH-HHHHHHH
Confidence 56899999999999998632 23568888999999999999999883 221 123444443 221 1112211
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccchh-hhhcc-cccc
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRKET-VARMM-ESID 329 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~ 329 (944)
..+.... .+.+.+-+||+||+... .....+.+...+.....++++|+||.... +.... ....
T Consensus 89 ~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 1111000 01244568999999543 22223335555555556778999886432 11111 1134
Q ss_pred eEeCCCCChHHHHHHHHH
Q 042336 330 ILIIKELSELECWSLFKR 347 (944)
Q Consensus 330 ~~~l~~L~~~~~~~lf~~ 347 (944)
.+.+...+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 567767777777666543
No 134
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00018 Score=71.82 Aligned_cols=175 Identities=20% Similarity=0.220 Sum_probs=103.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+|+|.+.-++.+.-.+..... .++.+--+.++|++|.||||||.-+++. ....+.. +-...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k~----tsGp~----------- 87 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLKI----TSGPA----------- 87 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeEe----ccccc-----------
Confidence 4699999888888777755433 4566778999999999999999999984 3322211 11110
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccC--------CCCcE-----------EE
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNC--------LHGSK-----------IL 313 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~gs~-----------ii 313 (944)
......+...+ ..|+ ..=++++|.+..-++..-+.+..++.+. ++++| |=
T Consensus 88 ---------leK~gDlaaiL-t~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 88 ---------LEKPGDLAAIL-TNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred ---------ccChhhHHHHH-hcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 01111122211 1122 2234555766544433333344443332 23333 33
Q ss_pred EEccchhhhhcccc--cceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHH
Q 042336 314 VTTRKETVARMMES--IDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAK 380 (944)
Q Consensus 314 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 380 (944)
-|||.-.+.+.... .-+.+++-.+.+|-.++..+.+..-..... ++.+.+|++...|-|.-+.
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~----~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID----EEAALEIARRSRGTPRIAN 221 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC----hHHHHHHHHhccCCcHHHH
Confidence 47886554443322 346788889999999999887743332222 6678899999999996443
No 135
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.79 E-value=0.00034 Score=69.64 Aligned_cols=125 Identities=21% Similarity=0.267 Sum_probs=72.3
Q ss_pred cccCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHH
Q 042336 169 LINVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 169 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 248 (944)
.+.-..++|.+.+++.|++-...=- ......-+.+||..|.|||++++++.+...-++ .--|.|..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k-------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK-------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH--------
Confidence 3444679999999998876432111 112345577899999999999999987321111 11122222
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCc-cCccChhhhHhhhccC---CCCc-EEEEEccchh
Q 042336 249 KAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWT-EDYSKWEPFHNCLMNC---LHGS-KILVTTRKET 320 (944)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~---~~gs-~iivTtr~~~ 320 (944)
.+..++..+...++. +..||+|++||+.- ++...+..+++.+.-+ .+.. .|..||..++
T Consensus 89 -----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred -----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 122334444444442 46799999999843 2334566777766543 2333 4444544333
No 136
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=2.3e-05 Score=78.13 Aligned_cols=202 Identities=19% Similarity=0.150 Sum_probs=108.5
Q ss_pred hcCCcccEEEeccCCCcccccccchhhhcccccceeccCccccc----ccCccccCCCcccEEEecCccC-CcccCcccc
Q 042336 579 NQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIK----ELPDTCCELFNLQTIEIEGCYN-LNRLPQGVG 653 (944)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~----~lP~~i~~L~~L~~L~L~~~~~-l~~lp~~i~ 653 (944)
..++.++.|||.+|.... ..++-.-+.+|++|++|+|+.|.+. .+| -.+.||++|.|.|+.. ...+-..+.
T Consensus 68 ~~~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhh
Confidence 566778888888876322 2334444567888888888887743 444 2456888888877651 123334456
Q ss_pred cCCCCceeeccccccccccc---cccC-CCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhh
Q 042336 654 KLVNLRHLIFDVNFVEYMPK---GIER-LTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHE 729 (944)
Q Consensus 654 ~L~~L~~L~l~~~~~~~lp~---~i~~-l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~ 729 (944)
.+++++.|.++-|....+-. .+.. -+.+.+|+ .++.+..+ ..
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh-------------------~~~c~~~~---------------w~ 189 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLH-------------------QLPCLEQL---------------WL 189 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhh-------------------cCCcHHHH---------------HH
Confidence 66667766665443222100 0000 01111111 00000000 00
Q ss_pred hhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCC--ChhhhcCCCcc
Q 042336 730 AKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETL--PSWIMSLNKLK 807 (944)
Q Consensus 730 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l--p~~~~~l~~L~ 807 (944)
....--.-++++.++-+..|.+... .......+++.+..|+|..+...+. .+.+..++.|+
T Consensus 190 ~~~~l~r~Fpnv~sv~v~e~PlK~~-----------------s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~ 252 (418)
T KOG2982|consen 190 NKNKLSRIFPNVNSVFVCEGPLKTE-----------------SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLV 252 (418)
T ss_pred HHHhHHhhcccchheeeecCcccch-----------------hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhh
Confidence 0001112346677777766643321 1234556677777778877653322 12244789999
Q ss_pred EEEeeccCCCCcCCC-------CCCCCCcceeeec
Q 042336 808 KLELSFCNKFEIMPP-------LGKLPSLELLEVF 835 (944)
Q Consensus 808 ~L~L~~~~~~~~l~~-------l~~l~~L~~L~L~ 835 (944)
.|.+.+++..+.+.. ++.|++++.|+=+
T Consensus 253 dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 253 DLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred eeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 999999988776543 5677777777654
No 137
>CHL00181 cbbX CbbX; Provisional
Probab=97.75 E-value=0.00096 Score=70.39 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=72.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..+.++|.+|+||||+|+.+++.....+.-...-|+.++. .++ ...+.+.. .......+.+. .+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a-~g-- 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA-MG-- 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc-cC--
Confidence 3478899999999999999977311111111222555542 122 22221211 11122222222 23
Q ss_pred eEEEeCCCCcc---------CccChhhhHhhhccCCCCcEEEEEccchhhhhcc--------cccceEeCCCCChHHHHH
Q 042336 281 FLLVLDDVWTE---------DYSKWEPFHNCLMNCLHGSKILVTTRKETVARMM--------ESIDILIIKELSELECWS 343 (944)
Q Consensus 281 ~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 343 (944)
-+|++|++..- ..+..+.+...+.....+.+||+++....+.... .....+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999999531 1112233444444444556777777544332211 113578999999999999
Q ss_pred HHHHHhcC
Q 042336 344 LFKRFAFF 351 (944)
Q Consensus 344 lf~~~~~~ 351 (944)
++...+-.
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98887643
No 138
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00051 Score=79.91 Aligned_cols=194 Identities=13% Similarity=0.199 Sum_probs=108.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+.-++.|...+.... -...+.++|..|+||||+|+.+.+.-.-....+ ...+..-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999885432 245678999999999999998876311000000 00000001111110
Q ss_pred HH-------hhCC-CCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc-cchhhh
Q 042336 253 EA-------LEGS-APNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT-RKETVA 322 (944)
Q Consensus 253 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 322 (944)
.. +.+. .....++.++...+.. -..+++-++|+|++..-+....+.+...+......+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000 0001112222222211 113455689999996655566777888877665566666555 444444
Q ss_pred hcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh-hhHHHH
Q 042336 323 RMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP-LAAKTI 382 (944)
Q Consensus 323 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~ 382 (944)
... .....+.+.+++.++....+...+-..+.... .+....|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 332 23467889999999988887765533322222 456677889999866 344444
No 139
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.0013 Score=73.82 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=87.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGK 279 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 279 (944)
...+.|+|..|+|||+|++++++. +......+++++ ...+...+...+... . ...++..+ ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~-~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFY-RN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHc-cc
Confidence 456889999999999999999984 322223345554 234455555554321 1 11233333 34
Q ss_pred ceEEEeCCCCccCccCh--hhhHhhhccC-CCCcEEEEEccch-h--------hhhcccccceEeCCCCChHHHHHHHHH
Q 042336 280 KFLLVLDDVWTEDYSKW--EPFHNCLMNC-LHGSKILVTTRKE-T--------VARMMESIDILIIKELSELECWSLFKR 347 (944)
Q Consensus 280 ~~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 347 (944)
.-+|++||+.......| +.+...+... ..|..||+||... . +...+.....+.+.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999844221111 2233332211 2355788888542 1 222234456889999999999999988
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHhhCCC
Q 042336 348 FAFFGRSPFECKQLEEIGRKIVGKCKGL 375 (944)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 375 (944)
++-....... +++..-|+..+.|.
T Consensus 283 k~~~~~~~l~----~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRIE----ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCC
Confidence 7754322222 44555566666543
No 140
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00094 Score=77.02 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=111.5
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH-
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI- 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i- 251 (944)
.+++|-+..++.+..++.... -...+.++|..|+||||+|+.+.+.-.-...... ..+....+-..+....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHHHHHHcCCC
Confidence 468999999999999986432 3457889999999999999999874211100000 0011111111100000
Q ss_pred --HHHhhCCCCCCCCHHHHHHH---HHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc-hhhhhc
Q 042336 252 --IEALEGSAPNLGELNSLLQH---ICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK-ETVARM 324 (944)
Q Consensus 252 --~~~l~~~~~~~~~~~~~~~~---l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~ 324 (944)
+..+.+. .....+.+... +.. -..+++-++|+|++..-+...++.+...+......+.+|++|.. ..+...
T Consensus 88 ~dv~~idga--s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGA--SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCc--ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000000 01112222221 111 12456678999999665555677787777765566777666643 333322
Q ss_pred c-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 325 M-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 325 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
. .....+.+.+++.++-...+.+.+...+.... ++.+..|++.++|.+..+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 2 22457899999999998888877644332222 56677789999998854433
No 141
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=3.2e-05 Score=55.21 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=34.8
Q ss_pred CcccEEEeccCCCcccccccchhhhcccccceeccCcccccccC
Q 042336 582 TCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELP 625 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP 625 (944)
++|++|++++|. +.++|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~----i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ----ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-----SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC----CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 479999999999 8899988999999999999999998765
No 142
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.0011 Score=74.69 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=94.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccC-c-eeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNF-E-KRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
..-+.|+|.+|+|||+|++++++. +.... . .++|++. .+++..+...+... ..+ .+.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 345899999999999999999984 33332 2 4556653 35666666655322 122 2223333
Q ss_pred CCceEEEeCCCCccC-ccCh-hhhHhhhccC-CCCcEEEEEcc-chhh--------hhcccccceEeCCCCChHHHHHHH
Q 042336 278 GKKFLLVLDDVWTED-YSKW-EPFHNCLMNC-LHGSKILVTTR-KETV--------ARMMESIDILIIKELSELECWSLF 345 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~-~~~~-~~l~~~l~~~-~~gs~iivTtr-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf 345 (944)
.+.-+|++||+.... ...+ +.+...+... ..|..||+||. ...- ...+...-++.+++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 456689999995321 1112 2233332211 23457888875 3221 112233457899999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 346 KRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
.+.+........ +++...|++.+.|..-.+
T Consensus 273 ~~~~~~~~~~l~----~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHGELP----EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCCCCC----HHHHHHHHhccccCHHHH
Confidence 888753322222 566777888887765443
No 143
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.68 E-value=0.00026 Score=78.50 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=96.9
Q ss_pred CccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.++.|+++.++++.+.+..+-.. +-..++-|.++|++|+|||++|+++++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 46889999999998876432110 1134566889999999999999999983 2222 333321 1
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHH-hcCCceEEEeCCCCcc-----------CccChhhhHhhhcc-----CCC
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICLS-ITGKKFLLVLDDVWTE-----------DYSKWEPFHNCLMN-----CLH 308 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~~-----~~~ 308 (944)
.+. ....+ +.......+.+. -...+.+|++||+..- +......+...+.. ...
T Consensus 200 ~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 ELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 11111 111222222222 2356789999998431 01111223333321 123
Q ss_pred CcEEEEEccchhhhh-cc----cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC
Q 042336 309 GSKILVTTRKETVAR-MM----ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL 375 (944)
Q Consensus 309 gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 375 (944)
+..||.||...+... .+ .-...+.+++.+.++..++|+.+....... ..-. ...+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVD----LEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCC----HHHHHHHcCCC
Confidence 567777876543222 11 124578999999999999999876433211 1112 24466666664
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.67 E-value=0.0004 Score=83.77 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=86.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc---cccccC-ceeEEEEeCCCCCHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN---DVINNF-EKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~ 248 (944)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+++.- .+...+ ...+|. ++ ...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHh
Confidence 368999999999999986442 2335699999999999999998731 111112 233432 11 11111
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHh-cCCceEEEeCCCCccC---------ccChhhhHhhhccCCCCcEEEEEccc
Q 042336 249 KAIIEALEGSAPNLGELNSLLQHICLSI-TGKKFLLVLDDVWTED---------YSKWEPFHNCLMNCLHGSKILVTTRK 318 (944)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~ 318 (944)
. + .....+.++..+.+.+.+ +.++.+|++|++..-. .+.-+.+...+..+ .-++|-+|..
T Consensus 251 a-------~-~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 251 A-------G-TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred h-------h-ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 0 0 001112233333333333 3467899999985210 11122244433321 2345555543
Q ss_pred hhhhhcc-------cccceEeCCCCChHHHHHHHHHHh
Q 042336 319 ETVARMM-------ESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 319 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
.+..... .....+.+.+++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3221111 123578999999999999998654
No 145
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.0011 Score=75.53 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=93.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccC--ceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNF--EKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
...+.|+|..|+|||+|++.+++. +...+ ..+++++.. ++...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 356899999999999999999984 44443 234455433 3344444444321 112 2233333
Q ss_pred CCceEEEeCCCCccCccC-h-hhhHhhhccC-CCCcEEEEEccchh---------hhhcccccceEeCCCCChHHHHHHH
Q 042336 278 GKKFLLVLDDVWTEDYSK-W-EPFHNCLMNC-LHGSKILVTTRKET---------VARMMESIDILIIKELSELECWSLF 345 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~~~~-~-~~l~~~l~~~-~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 345 (944)
+.-+|||||+..-.... + +.+...+... ..|..||+||.... +...+....++.+++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34589999995321111 1 2233322211 23456888876431 1223344568999999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 346 KRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
.+.+-....... +++...|++.++|..-.+
T Consensus 290 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGIDLP----DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCCCCC----HHHHHHHHcCcCCCHHHH
Confidence 998754222122 567788888888876643
No 146
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.63 E-value=0.00095 Score=69.96 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=79.3
Q ss_pred ccccchhHHHHHHHHhccC---------CcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCH
Q 042336 174 EVRGRDEEKNTLKTKLLCE---------NSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDE 244 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 244 (944)
.++|.+..++++.+..... .-...+...-+.++|++|+||||+|+.+++...-.+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788877766665432110 000123445678999999999999999976311001111112333322
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccC--------ccChhhhHhhhccCCCCcEEEEEc
Q 042336 245 YRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTED--------YSKWEPFHNCLMNCLHGSKILVTT 316 (944)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTt 316 (944)
.++.. ..-+. ........+.+. . .-+|++|++..-. .+..+.+...+........+|+++
T Consensus 83 ~~l~~----~~~g~-----~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVG----EYIGH-----TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhh----hhccc-----hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 11000 011122222222 2 2488999995311 112233444443433334555665
Q ss_pred cchhhhh------cc-cc-cceEeCCCCChHHHHHHHHHHhc
Q 042336 317 RKETVAR------MM-ES-IDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 317 r~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
...+... .. .. ...+.+++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4332211 11 11 24678999999999999987764
No 147
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.62 E-value=0.0007 Score=71.51 Aligned_cols=133 Identities=17% Similarity=0.121 Sum_probs=72.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCce
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKF 281 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 281 (944)
-+.++|.+|+||||+|+.+++.....+.....-|+.++. .++ +..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cCc
Confidence 477999999999999987766211111111223555442 122 22222211 11122222222 235
Q ss_pred EEEeCCCCcc---------CccChhhhHhhhccCCCCcEEEEEccchhhhhccc--------ccceEeCCCCChHHHHHH
Q 042336 282 LLVLDDVWTE---------DYSKWEPFHNCLMNCLHGSKILVTTRKETVARMME--------SIDILIIKELSELECWSL 344 (944)
Q Consensus 282 LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 344 (944)
+|+||++..- ..+.++.+...+.....+.+||+++.......... ....+.+++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999521 11223445555555555667777765432221111 135789999999999999
Q ss_pred HHHHhc
Q 042336 345 FKRFAF 350 (944)
Q Consensus 345 f~~~~~ 350 (944)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888753
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0015 Score=69.76 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=113.6
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc---cc----------cccCceeEEEEeC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN---DV----------INNFEKRIWVSVS 239 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~----------~~~F~~~~wv~vs 239 (944)
.+++|.+..++.+...+..+. -.....++|..|+||+++|..+.+.- .. ........|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 358899999999999985432 24688999999999999997775521 00 1122233444311
Q ss_pred CCCCHHHHHHHHHHHhh--CCCCCCCCHHHHHHHHHHHh-----cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEE
Q 042336 240 DPFDEYRVAKAIIEALE--GSAPNLGELNSLLQHICLSI-----TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKI 312 (944)
Q Consensus 240 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 312 (944)
...+-..+-..-++..+ ........++++. .+.+.+ .+++-++|+|++...+....+.+...+..-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000011111111 1111122233322 233322 4667799999997666667777888887655 4455
Q ss_pred EEEcc-chhhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 313 LVTTR-KETVARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 313 ivTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
|++|. ...+.... .....+.+.++++++..+.+.+....... ......++..++|.|..+...
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-------hhHHHHHHHHcCCCHHHHHHH
Confidence 55554 33333332 33578999999999999999886421110 111357889999999766543
No 149
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.61 E-value=7.9e-06 Score=92.06 Aligned_cols=101 Identities=22% Similarity=0.376 Sum_probs=66.7
Q ss_pred hhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCC
Q 042336 578 FNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVN 657 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 657 (944)
+..++.|..|++.++. +..+...+..+.+|++|+|++|.|..+. .+..|..|+.|++++|. +..++ .+..+++
T Consensus 91 l~~~~~l~~l~l~~n~----i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK----IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDIS-GLESLKS 163 (414)
T ss_pred cccccceeeeeccccc----hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhcc-CCccchh
Confidence 4666777777777777 6665555677777777777777777664 46667777777777776 55553 3555777
Q ss_pred Cceeecccccccccccc-ccCCCCCCcCC
Q 042336 658 LRHLIFDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 658 L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
|+.++++.|.+..+... ...+.++..+.
T Consensus 164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDELSELISLEELD 192 (414)
T ss_pred hhcccCCcchhhhhhhhhhhhccchHHHh
Confidence 77777777666655432 34455555444
No 150
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.0033 Score=68.23 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=85.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
....+.|+|..|.|||.|++++.+ ...........++++. +.....++..+... -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 467899999999999999999999 4555555433444432 34444444443321 122344443
Q ss_pred CceEEEeCCCCccC-ccChhh-hHhhhccC-CCCcEEEEEccch---------hhhhcccccceEeCCCCChHHHHHHHH
Q 042336 279 KKFLLVLDDVWTED-YSKWEP-FHNCLMNC-LHGSKILVTTRKE---------TVARMMESIDILIIKELSELECWSLFK 346 (944)
Q Consensus 279 k~~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 346 (944)
.-=++++||++.-. .+.|+. +...|..- ..|-.||+|++.. .+...+...-++.+.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 34488899995421 112222 33333221 2344899998643 233344556789999999999999999
Q ss_pred HHhcCCCC
Q 042336 347 RFAFFGRS 354 (944)
Q Consensus 347 ~~~~~~~~ 354 (944)
+++....-
T Consensus 255 kka~~~~~ 262 (408)
T COG0593 255 KKAEDRGI 262 (408)
T ss_pred HHHHhcCC
Confidence 87654433
No 151
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.002 Score=74.64 Aligned_cols=192 Identities=17% Similarity=0.178 Sum_probs=107.8
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+.-++.+...+.... -...+.++|..|+||||+|+.+.+...-...-+ ..+++.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986432 345677899999999999998866311000000 00111111111111
Q ss_pred HHhhCC-----CCCCCCHH---HHHHHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc-cchhhh
Q 042336 253 EALEGS-----APNLGELN---SLLQHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT-RKETVA 322 (944)
Q Consensus 253 ~~l~~~-----~~~~~~~~---~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 322 (944)
.....+ .......+ ++...+.. -..+++-++|+|++..-....+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 100000 00011122 22222211 124566788999996555556777777776554555555555 433333
Q ss_pred hcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHH
Q 042336 323 RMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAK 380 (944)
Q Consensus 323 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 380 (944)
... .....+.+.+++.++....+...+-..+.... .+..+.|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 222 22457889999999998888876643322222 4567778889998776443
No 152
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.0031 Score=72.14 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=90.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccC--ceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNF--EKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
..+.|+|..|+|||.|++++++. ....+ ..+++++. .++..++...+... ..+ .+.+.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc
Confidence 45899999999999999999984 33322 23455543 34444554444321 111 22233332
Q ss_pred CceEEEeCCCCccCc-cChhh-hHhhhccC-CCCcEEEEEccch---------hhhhcccccceEeCCCCChHHHHHHHH
Q 042336 279 KKFLLVLDDVWTEDY-SKWEP-FHNCLMNC-LHGSKILVTTRKE---------TVARMMESIDILIIKELSELECWSLFK 346 (944)
Q Consensus 279 k~~LlVlDdvw~~~~-~~~~~-l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 346 (944)
.=+|||||+..... ..|.. +...+... ..|..|||||+.. .+...+...-++.+.+.+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 35888999954321 22322 33333221 2355688888752 123334556789999999999999999
Q ss_pred HHhcCCCCCCCchhHHHHHHHHHHhhCCChh
Q 042336 347 RFAFFGRSPFECKQLEEIGRKIVGKCKGLPL 377 (944)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 377 (944)
+++........ +++..-|++.+.+..-
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCHH
Confidence 88754332222 5566667776665543
No 153
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=6.6e-05 Score=88.25 Aligned_cols=109 Identities=23% Similarity=0.228 Sum_probs=83.2
Q ss_pred cCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccC--ccc
Q 042336 551 FNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELP--DTC 628 (944)
Q Consensus 551 ~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP--~~i 628 (944)
..+|.||+|.+.+-... ...+..++.+|++|+.||+++++ +..+ ..|++|++|+.|.+.+-.+..-+ ..+
T Consensus 145 ~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~Tn----I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTN----ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred hhCcccceEEecCceec---chhHHHHhhccCccceeecCCCC----ccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 45899999999986543 23356778999999999999999 6666 77999999999999987766322 357
Q ss_pred cCCCcccEEEecCccCCcccCcc-------cccCCCCceeecccccc
Q 042336 629 CELFNLQTIEIEGCYNLNRLPQG-------VGKLVNLRHLIFDVNFV 668 (944)
Q Consensus 629 ~~L~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~~ 668 (944)
.+|++|++||+|...... -+.- -..|++||.||.+.+.+
T Consensus 217 F~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 789999999999876332 2211 13489999999976543
No 154
>PRK08116 hypothetical protein; Validated
Probab=97.56 E-value=0.00031 Score=73.38 Aligned_cols=103 Identities=27% Similarity=0.313 Sum_probs=60.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..+.++|.+|+|||+||.++++. ...+-..+++++ ..+++..+........ ..+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC
Confidence 35889999999999999999994 333334456665 3345555555443221 11111 2233344433
Q ss_pred eEEEeCCCCccCccChhh--hHhhhccC-CCCcEEEEEccc
Q 042336 281 FLLVLDDVWTEDYSKWEP--FHNCLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 318 (944)
||||||+......+|.. +...+... ..|..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995444445544 33333321 345679999964
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.53 E-value=0.00058 Score=83.43 Aligned_cols=154 Identities=20% Similarity=0.202 Sum_probs=85.4
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcc---ccccC-ceeEEEEeCCCCCHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDND---VINNF-EKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~ 248 (944)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++..-. +.... ...+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 358999999999999996542 23456999999999999999987311 11111 234442 1 11111
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHh-cCCceEEEeCCCCcc-------CccChhh-hHhhhccCCCCcEEEEEccch
Q 042336 249 KAIIEALEGSAPNLGELNSLLQHICLSI-TGKKFLLVLDDVWTE-------DYSKWEP-FHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~-------~~~~~~~-l~~~l~~~~~gs~iivTtr~~ 319 (944)
+.+. ....+.++....+.+.+ ..++.+|++|++..- ...+... +...+..+ .-++|-+|...
T Consensus 247 ------~ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 247 ------LAGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred ------hccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1111 11122233333333322 356889999998421 0011222 33333322 23556666554
Q ss_pred hhhhc-------ccccceEeCCCCChHHHHHHHHH
Q 042336 320 TVARM-------MESIDILIIKELSELECWSLFKR 347 (944)
Q Consensus 320 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 347 (944)
+.... .....++.+...+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12245778888899998888764
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.002 Score=69.19 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=68.4
Q ss_pred CCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh-hhhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCC
Q 042336 278 GKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET-VARM-MESIDILIIKELSELECWSLFKRFAFFGRSP 355 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 355 (944)
+++-++|+|++...+....+.+...+..-..++.+|+||.+.. +... ......+.+.+++.+++.+.+.... ...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 4555667899987777788888888887666788888877653 3322 2235689999999999999887653 111
Q ss_pred CCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 356 FECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
. ++.+..++..++|.|..+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 334567789999999866544
No 157
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.0053 Score=61.01 Aligned_cols=181 Identities=17% Similarity=0.198 Sum_probs=107.1
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeC-CCCCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVS-DPFDEYRVAKAIIEALEGSAPNL--GELNSLLQHICLS 275 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~ 275 (944)
+.+++.++|.-|.|||.+.++...... =+.++-|.+. ...+...+...++..+..+.... ...++....+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 456899999999999999995443111 1122224444 44567788888888887732111 1123333333332
Q ss_pred h-cCCc-eEEEeCCCCccCccChhhhHhhhccCCCCc---EEEEEccch--------hhhhcccccce-EeCCCCChHHH
Q 042336 276 I-TGKK-FLLVLDDVWTEDYSKWEPFHNCLMNCLHGS---KILVTTRKE--------TVARMMESIDI-LIIKELSELEC 341 (944)
Q Consensus 276 l-~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~iivTtr~~--------~v~~~~~~~~~-~~l~~L~~~~~ 341 (944)
. +++| ..+++||...-.....+.++-...-...++ +|+..-..+ .....-..... |.+.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 2 5777 899999996655555555554433222222 344443321 11111111234 89999999999
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhh
Q 042336 342 WSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGS 384 (944)
Q Consensus 342 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 384 (944)
..++..+..+...+.. -.-.+....|..+..|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHH
Confidence 9998887655533221 11245567799999999999987754
No 158
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=4.9e-06 Score=82.85 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=107.3
Q ss_pred hhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCC---CChhhhcCCCccEE
Q 042336 733 VELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGET---LPSWIMSLNKLKKL 809 (944)
Q Consensus 733 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---lp~~~~~l~~L~~L 809 (944)
..+..++.|+.|+|.++.+.+. +...+....+|+.|+|+++.+.+ +.-.+.+|+.|..|
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~------------------I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDP------------------IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred HHHHHHHhhhhccccccccCcH------------------HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4566778888888888765542 44556667889999999887532 22234588999999
Q ss_pred EeeccCCCCcCCC--C-CCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccc
Q 042336 810 ELSFCNKFEIMPP--L-GKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLN 886 (944)
Q Consensus 810 ~L~~~~~~~~l~~--l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~ 886 (944)
+|++|......-. . .--++|+.|+|+||.. .+...........+|+|..|.+.|+..+....+. .+..|+-|+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr--nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~--~~~kf~~L~ 341 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR--NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--EFFKFNYLQ 341 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHh--hhhhhHHHHHHHhCCceeeeccccccccCchHHH--HHHhcchhe
Confidence 9999975543211 1 1126888999988752 1222222222346788888888877665543221 244789999
Q ss_pred eeeecccccccC-CCCCCCCCCCcCeEEEecCc
Q 042336 887 SLEIRDCHKLKS-LPHQILGNTTLQMLKIYNCR 918 (944)
Q Consensus 887 ~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~ 918 (944)
+|.++.|..+.. .--.+...|+|.+|++.+|-
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999999975431 11235678899999998873
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.49 E-value=0.00037 Score=64.56 Aligned_cols=21 Identities=43% Similarity=0.464 Sum_probs=19.4
Q ss_pred EEEEeeCCchHHHHHHHHhcC
Q 042336 203 ISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~ 223 (944)
|.|+|.+|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999994
No 160
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00036 Score=75.41 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=50.6
Q ss_pred hhcCCcccEEEeccCCCcccccccchhhhcccccceeccCccc-ccccCccccCCCcccEEEecCccCCcccCcccccCC
Q 042336 578 FNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLE-IKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLV 656 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~-i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 656 (944)
+..+++++.|++++|. +..+|. + -.+|+.|.+++|. +..+|..+. .+|++|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~----L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s----- 113 (426)
T PRK15386 48 IEEARASGRLYIKDCD----IESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES----- 113 (426)
T ss_pred HHHhcCCCEEEeCCCC----CcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc-----
Confidence 4567888899999886 677762 1 1258888888755 567776553 57888888888667777754
Q ss_pred CCceeeccc
Q 042336 657 NLRHLIFDV 665 (944)
Q Consensus 657 ~L~~L~l~~ 665 (944)
|++|++.+
T Consensus 114 -Le~L~L~~ 121 (426)
T PRK15386 114 -VRSLEIKG 121 (426)
T ss_pred -cceEEeCC
Confidence 55555544
No 161
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=5.5e-05 Score=88.93 Aligned_cols=127 Identities=20% Similarity=0.143 Sum_probs=89.1
Q ss_pred CCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCC
Q 042336 553 AKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELF 632 (944)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~ 632 (944)
-.+|+.|++.|.... +..+...+-.-+|.||.|.++|-.+.. .++-.-..++++|+.||+|+|+++.+ ..|++|+
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 467888888775432 255667767889999999999876311 12333345799999999999999988 6899999
Q ss_pred cccEEEecCccCCcccC--cccccCCCCceeecccccccccccc-------ccCCCCCCcCC
Q 042336 633 NLQTIEIEGCYNLNRLP--QGVGKLVNLRHLIFDVNFVEYMPKG-------IERLTCLRTLS 685 (944)
Q Consensus 633 ~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~lp~~-------i~~l~~L~~L~ 685 (944)
|||+|.+++-. +..-+ ..+.+|++|++||++.......+.- -..|++|+.|+
T Consensus 196 nLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 196 NLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLD 256 (699)
T ss_pred cHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEe
Confidence 99999998854 33221 3567899999999965432222211 12367777776
No 162
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.43 E-value=3.1e-05 Score=68.26 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=66.4
Q ss_pred hhcCCcccEEEeccCCCcccccccchhhhcc-cccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCC
Q 042336 578 FNQFTCLRALKITRNSKENSIYEIPKEIQKL-IHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLV 656 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l-~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 656 (944)
+.....|...+|++|. +.++|..+... +.+..|+|++|.|..+|..+..++.|+.|+++.|. +...|..|..|.
T Consensus 49 l~~~~el~~i~ls~N~----fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG----FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLI 123 (177)
T ss_pred HhCCceEEEEecccch----hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHH
Confidence 4555667777777777 67777666543 46777888888888888777778888888888777 777777777777
Q ss_pred CCceeecccccccccccc
Q 042336 657 NLRHLIFDVNFVEYMPKG 674 (944)
Q Consensus 657 ~L~~L~l~~~~~~~lp~~ 674 (944)
+|-.|+...|....+|..
T Consensus 124 ~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPENARAEIDVD 141 (177)
T ss_pred hHHHhcCCCCccccCcHH
Confidence 777777766655566544
No 163
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.43 E-value=9.2e-06 Score=71.52 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=83.4
Q ss_pred CcccEEEeccCCCcccccccc---hhhhcccccceeccCcccccccCccccCC-CcccEEEecCccCCcccCcccccCCC
Q 042336 582 TCLRALKITRNSKENSIYEIP---KEIQKLIHLRYFKLHWLEIKELPDTCCEL-FNLQTIEIEGCYNLNRLPQGVGKLVN 657 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp---~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L-~~L~~L~L~~~~~l~~lp~~i~~L~~ 657 (944)
+.+-.|+|++|. +..++ ..+....+|...+|++|.++.+|+.+... +.+.+|++++|. +..+|.++..++.
T Consensus 27 kE~h~ldLssc~----lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~a 101 (177)
T KOG4579|consen 27 KELHFLDLSSCQ----LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPA 101 (177)
T ss_pred HHhhhcccccch----hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHH
Confidence 345678888887 55444 44566788888999999999999987755 489999999988 9999999999999
Q ss_pred CceeeccccccccccccccCCCCCCcCC
Q 042336 658 LRHLIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 658 L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
|+.|+++.|.+...|.-|..|.+|-.|.
T Consensus 102 Lr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 102 LRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hhhcccccCccccchHHHHHHHhHHHhc
Confidence 9999999999999998888787777775
No 164
>PRK10536 hypothetical protein; Provisional
Probab=97.40 E-value=0.0018 Score=65.43 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=76.4
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE----eCC-----CCC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS----VSD-----PFD 243 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~----vs~-----~~~ 243 (944)
..+.++......+..++.. ..++.+.|.+|.|||+||.++..+.-..+.|+..+-+. +.+ +.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4467888888889888842 24899999999999999998877422234444333321 111 111
Q ss_pred HH----HHHHHHHHHhhCCCCCCCCHHHHHH--------HHHHHhcCCce---EEEeCCCCccCccChhhhHhhhccCCC
Q 042336 244 EY----RVAKAIIEALEGSAPNLGELNSLLQ--------HICLSITGKKF---LLVLDDVWTEDYSKWEPFHNCLMNCLH 308 (944)
Q Consensus 244 ~~----~~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdvw~~~~~~~~~l~~~l~~~~~ 308 (944)
.. -.+.-+...+..-.. ....+.... .=..+++|+.+ +||+|.+.+.+. ..+...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 11 112222222221000 001111100 00125677765 999999976544 455555666678
Q ss_pred CcEEEEEccch
Q 042336 309 GSKILVTTRKE 319 (944)
Q Consensus 309 gs~iivTtr~~ 319 (944)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999987544
No 165
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.37 E-value=0.0032 Score=71.08 Aligned_cols=165 Identities=13% Similarity=0.202 Sum_probs=88.3
Q ss_pred CccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCcccccc-----CceeEEEEeCC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINN-----FEKRIWVSVSD 240 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~ 240 (944)
.++.|.+..++++.+.+..+-.. +-..++-+.++|++|+|||++|+++++. .... +....++.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 35778999999988876421100 1123456889999999999999999984 2222 22344555443
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH-hcCCceEEEeCCCCccC-------ccCh-----hhhHhhhccC-
Q 042336 241 PFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLS-ITGKKFLLVLDDVWTED-------YSKW-----EPFHNCLMNC- 306 (944)
Q Consensus 241 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~-------~~~~-----~~l~~~l~~~- 306 (944)
. +++. ...+. ....+..+....+.. -.+++++|+||++..-- ..+. ..+...+...
T Consensus 260 ~----eLl~----kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----ELLN----KYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----hhcc----cccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 1111 00000 000011122222221 13578999999995310 0111 1232222211
Q ss_pred -CCCcEEEEEccchhhhh-cc----cccceEeCCCCChHHHHHHHHHHh
Q 042336 307 -LHGSKILVTTRKETVAR-MM----ESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 307 -~~gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
..+..||.||...+... .+ .-...+.+...+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445666665443222 11 124568999999999999999875
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.35 E-value=0.0014 Score=80.44 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=83.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccccc------CceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINN------FEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~ 246 (944)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+... +... ....+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 358999999999999996532 234568999999999999998873 2111 12233321 1111
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHh--cCCceEEEeCCCCccC-----cc--Ch-hhhHhhhccCCCC-cEEEEE
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSI--TGKKFLLVLDDVWTED-----YS--KW-EPFHNCLMNCLHG-SKILVT 315 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~-----~~--~~-~~l~~~l~~~~~g-s~iivT 315 (944)
++ .+. ....+.+.....+.+.+ .+++.+|++|++..-. .. +. +.+...+ ..| -++|-+
T Consensus 240 l~-------a~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~Iga 308 (852)
T TIGR03346 240 LI-------AGA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGA 308 (852)
T ss_pred Hh-------hcc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEe
Confidence 11 000 00112222333333332 2468999999995311 00 11 1122222 223 345555
Q ss_pred ccchhhhhcc-------cccceEeCCCCChHHHHHHHHHHh
Q 042336 316 TRKETVARMM-------ESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 316 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
|...+....+ ....++.+...+.++...++....
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 5544332211 123467888889999999887653
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.34 E-value=0.00098 Score=62.57 Aligned_cols=87 Identities=23% Similarity=0.179 Sum_probs=46.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCC-
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGK- 279 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 279 (944)
..+.|+|.+|+||||+++.++.. .......++++..+........... ...................+....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 46889999999999999999884 2222223555555443322222211 111111111122222233333333333
Q ss_pred ceEEEeCCCCcc
Q 042336 280 KFLLVLDDVWTE 291 (944)
Q Consensus 280 ~~LlVlDdvw~~ 291 (944)
..+|++|++...
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 499999999654
No 168
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.34 E-value=5.2e-05 Score=84.60 Aligned_cols=85 Identities=19% Similarity=0.371 Sum_probs=65.7
Q ss_pred HHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCcc-ccCCCcccEEEecCccCCcccCccccc
Q 042336 576 VLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQGVGK 654 (944)
Q Consensus 576 ~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~ 654 (944)
..+.-++.|+.|+|++|. +.+.- .+..|++|+.|||++|.+..+|.- ...+ +|+.|++++|. +..+ .+|.+
T Consensus 181 ~SLqll~ale~LnLshNk----~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL-~gie~ 252 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNK----FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTL-RGIEN 252 (1096)
T ss_pred HHHHHHHHhhhhccchhh----hhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhh-hhHHh
Confidence 335556789999999998 54443 688899999999999998877753 2233 49999999987 7766 56889
Q ss_pred CCCCceeecccccc
Q 042336 655 LVNLRHLIFDVNFV 668 (944)
Q Consensus 655 L~~L~~L~l~~~~~ 668 (944)
|++|++||++.|-+
T Consensus 253 LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLL 266 (1096)
T ss_pred hhhhhccchhHhhh
Confidence 99999999977644
No 169
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0031 Score=67.07 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=67.8
Q ss_pred cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-hhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCC
Q 042336 277 TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVARMM-ESIDILIIKELSELECWSLFKRFAFFGRS 354 (944)
Q Consensus 277 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 354 (944)
.+++-++|+|++...+...-+.+...+..-..++.+|++|.+. .+.... .-...+.+.+++.+++.+.+....
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----- 185 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----- 185 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----
Confidence 3566799999997766667777888887766788777777643 333332 235678899999999998887531
Q ss_pred CCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 355 PFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
.. +..+..++..++|.|+.+..+
T Consensus 186 -~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 186 -VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 233567899999999876544
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.25 E-value=0.0011 Score=73.60 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=86.9
Q ss_pred CccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.++.|.+.+++++.+.+..+-.. +-...+-+.++|.+|+|||++|+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 35789999999888876421110 1123456789999999999999999983 33333 222110
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCcc--------CccC---hhhhHhhhc---c--CCCC
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTE--------DYSK---WEPFHNCLM---N--CLHG 309 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~--------~~~~---~~~l~~~l~---~--~~~g 309 (944)
.+. ....+. ....+...+.....+.+.+|+||++..- .... ...+...+. . ...+
T Consensus 252 eL~----~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELI----QKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhh----hhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 111110 0111122222233467889999987321 0000 111222221 1 1235
Q ss_pred cEEEEEccchhhhhc-c----cccceEeCCCCChHHHHHHHHHHhc
Q 042336 310 SKILVTTRKETVARM-M----ESIDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 310 s~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
.+||.||...+.... + .....+.+...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888875443222 1 1246788999999999999987753
No 171
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.25 E-value=0.00033 Score=75.68 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=18.2
Q ss_pred cccEEEeccCCCcccccccchhhhcccccceeccCcc-cccccCc
Q 042336 583 CLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWL-EIKELPD 626 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~-~i~~lP~ 626 (944)
+|++|.+++|.. +..+|..+. .+|++|++++| .+..+|+
T Consensus 73 sLtsL~Lsnc~n---LtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 73 ELTEITIENCNN---LTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred CCcEEEccCCCC---cccCCchhh--hhhhheEccCccccccccc
Confidence 355555555443 334443332 34555555555 3444443
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.22 E-value=0.0034 Score=76.67 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=37.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999996532 234569999999999999998873
No 173
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.20 E-value=0.0055 Score=67.98 Aligned_cols=147 Identities=20% Similarity=0.184 Sum_probs=88.4
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCce
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKF 281 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 281 (944)
++.|.|+-++||||+++.+... .... .+++..-+...-..-+.+ ....+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCCc
Confidence 9999999999999999777663 2122 455544332111111111 11111111122788
Q ss_pred EEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhhhc------ccccceEeCCCCChHHHHHHHHHHhcCCCCC
Q 042336 282 LLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVARM------MESIDILIIKELSELECWSLFKRFAFFGRSP 355 (944)
Q Consensus 282 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 355 (944)
.++||.|.. ...|......+.+.++. +|++|+-+...... .+-...+.+.||+-.|...+-...+
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~------ 167 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI------ 167 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc------
Confidence 999999954 57899988888887766 89999887654332 2335688999999998877543111
Q ss_pred CCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 356 FECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
....... .-+-.-..||.|.++..
T Consensus 168 -~~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 -EPSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred -chhHHHH-HHHHHHHhCCCcHHHhC
Confidence 0001111 22333467999987644
No 174
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.19 E-value=0.002 Score=74.77 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=40.1
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+++|.+..++++..++..... .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999998865432 1223468999999999999999999874
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.18 E-value=0.0034 Score=74.83 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=85.2
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc---ccccc-CceeEEEEeCCCCCHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN---DVINN-FEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~~-F~~~~wv~vs~~~~~~~~~~ 249 (944)
.++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++..- .+... .++.+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 58999999999999997532 1234689999999999999998631 11111 13444421 11111
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHh-cCCceEEEeCCCCcc--------CccChhh-hHhhhccCCCCcEEEEEccch
Q 042336 250 AIIEALEGSAPNLGELNSLLQHICLSI-TGKKFLLVLDDVWTE--------DYSKWEP-FHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~--------~~~~~~~-l~~~l~~~~~gs~iivTtr~~ 319 (944)
+.+. ....+.+.....+.+.+ +.++.+|++|++..- ...+... +...+.. ..-++|-+|...
T Consensus 254 -----laG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~ 325 (758)
T PRK11034 254 -----LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQ 325 (758)
T ss_pred -----hccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChH
Confidence 1111 01112223333333323 356789999999421 1111222 2333322 133455555544
Q ss_pred hhhhcc-------cccceEeCCCCChHHHHHHHHHHh
Q 042336 320 TVARMM-------ESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 320 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
+..... .-...+.+.+.+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 432211 123578999999999999988653
No 176
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.011 Score=62.76 Aligned_cols=176 Identities=10% Similarity=0.032 Sum_probs=102.1
Q ss_pred HHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc---cccc----cCceeEEEEeCCCCCHHHHHHHHHH
Q 042336 181 EKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN---DVIN----NFEKRIWVSVSDPFDEYRVAKAIIE 253 (944)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~ 253 (944)
..+++.+.+..+ .-...+.++|+.|+||+++|+.+...- .... .-...-++....++|...+
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 345555555332 235678899999999999998886521 0000 0000001111111111100
Q ss_pred HhhCC-CCCCCCHHHHHHHHHHHh-----cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-hhhhcc-
Q 042336 254 ALEGS-APNLGELNSLLQHICLSI-----TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVARMM- 325 (944)
Q Consensus 254 ~l~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~- 325 (944)
... ......++++.. +.+.+ .+++-++|+|++...+....+.+...+..-..++.+|++|.+. .+....
T Consensus 80 --~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 000 001122333322 22222 3556689999997777778888998888877788777777654 343332
Q ss_pred cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 326 ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 326 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
.-...+.+.+++.++..+.+.... . . .+..++..++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~----~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG----I--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC----C--c------hHHHHHHHcCCCHHHHHHH
Confidence 335688999999999999886531 0 1 1346789999999977554
No 177
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.14 E-value=0.0043 Score=59.44 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=77.1
Q ss_pred cchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc---ccc---------------ccCceeEEEEe
Q 042336 177 GRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN---DVI---------------NNFEKRIWVSV 238 (944)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~---------------~~F~~~~wv~v 238 (944)
|-++..+.+.+.+.... -...+.++|..|+||+|+|..+.+.- ... .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45666777777775432 34568899999999999998886621 110 11223333332
Q ss_pred CCC---CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEE
Q 042336 239 SDP---FDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVT 315 (944)
Q Consensus 239 s~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 315 (944)
... ..++++. .+.+.+... ...+++=++|+||+...+.+.++.+...+.....++++|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~----------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLS----------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHH----------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 1222211 222222111 11345668999999877778888899999888889999999
Q ss_pred ccchh-hhhcc-cccceEeCCCC
Q 042336 316 TRKET-VARMM-ESIDILIIKEL 336 (944)
Q Consensus 316 tr~~~-v~~~~-~~~~~~~l~~L 336 (944)
|.+.. +.... .-...+.+.++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE---
T ss_pred ECChHHChHHHHhhceEEecCCC
Confidence 88654 22221 22345555554
No 178
>PRK12377 putative replication protein; Provisional
Probab=97.13 E-value=0.00082 Score=68.77 Aligned_cols=101 Identities=21% Similarity=0.169 Sum_probs=57.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..+.++|.+|+|||+||.++++. .......++++++. +++..+-..... ...... +.+.+ .+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cCC
Confidence 56899999999999999999994 33344445666554 344444433321 111112 22222 456
Q ss_pred eEEEeCCCCccCccChhh--hHhhhccC-CCCcEEEEEccc
Q 042336 281 FLLVLDDVWTEDYSKWEP--FHNCLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 318 (944)
=||||||+.......|.. +...+... .+.--+||||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 699999995443345543 33333322 122347888763
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0082 Score=65.01 Aligned_cols=163 Identities=9% Similarity=0.043 Sum_probs=90.9
Q ss_pred cccc-chhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 174 EVRG-RDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 174 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.+.+.---....... .+... ...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHh
Confidence 3566 666777777777532 235677899999999999998886521000000000 00000 0000000
Q ss_pred HHhh------CCCCCCCCHHHHHHHHHH----HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh-h
Q 042336 253 EALE------GSAPNLGELNSLLQHICL----SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET-V 321 (944)
Q Consensus 253 ~~l~------~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 321 (944)
..-. ........++++...+.. -..+.+-++|+|++...+....+.+...+..-..++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 000011122333222221 1245566899999976666667778888887777887887776533 3
Q ss_pred hhcc-cccceEeCCCCChHHHHHHHHHH
Q 042336 322 ARMM-ESIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 322 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
.... .....+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3322 23568999999999998888653
No 180
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.12 E-value=0.0046 Score=68.25 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=85.6
Q ss_pred CccccchhHHHHHHHHhccCCc-------ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS-------EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.++.|.+..+++|.+.+..+-. -+-..++-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 4588999888888876642110 01124567889999999999999999984 22222 22211 1
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCcc------Cc----cChh-hhHhhhcc-----CCCC
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTE------DY----SKWE-PFHNCLMN-----CLHG 309 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------~~----~~~~-~l~~~l~~-----~~~g 309 (944)
.+ .....+. ....+...+.......+.+|++|++..- .. .... .+...+.. ...+
T Consensus 214 ~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 1111110 0111222222333567899999997421 00 0111 12222221 1245
Q ss_pred cEEEEEccchhhhhc--c---cccceEeCCCCChHHHHHHHHHHh
Q 042336 310 SKILVTTRKETVARM--M---ESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 310 s~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
..||.||...+.... . .-...+.+...+.++...+|....
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 678888875443221 1 124568888888888888888664
No 181
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.12 E-value=0.00013 Score=82.34 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=64.8
Q ss_pred ccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCcccc
Q 042336 550 MFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCC 629 (944)
Q Consensus 550 ~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~ 629 (944)
+..+.+|..|.+.++.... +...+..+++|++|+|++|. +.++. .+..+..|+.|++++|.|..++ .+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~----I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNK----ITKLE-GLSTLTLLKELNLSGNLISDIS-GLE 159 (414)
T ss_pred cccccceeeeeccccchhh-----cccchhhhhcchheeccccc----ccccc-chhhccchhhheeccCcchhcc-CCc
Confidence 4456667777776655321 12224556777777777776 55543 3566666777777777766554 344
Q ss_pred CCCcccEEEecCccCCcccCcc-cccCCCCceeeccccccc
Q 042336 630 ELFNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLIFDVNFVE 669 (944)
Q Consensus 630 ~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 669 (944)
.+.+|+.+++++|. +..++.. +..+.+|+.+.++.|.+.
T Consensus 160 ~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchh
Confidence 56777777777766 5444432 466666777766665443
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.10 E-value=0.004 Score=76.13 Aligned_cols=138 Identities=14% Similarity=0.239 Sum_probs=76.6
Q ss_pred CccccchhHHHHHHHHhccCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++. ....-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-----~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-----K 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-----h
Confidence 3588999999988888764211 01223357889999999999999999863 211112334444443211 1
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHhcC-CceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEcc
Q 042336 250 AIIEALEGSAPNLGELNSLLQHICLSITG-KKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTTR 317 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 317 (944)
.....+-+..+.....+. ...+...++. ..-+|+|||+...++..+..+...+..+. ..+.||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112233333222111111 1112222222 23599999997666777777777765431 1233777876
Q ss_pred c
Q 042336 318 K 318 (944)
Q Consensus 318 ~ 318 (944)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 4
No 183
>PRK08181 transposase; Validated
Probab=97.09 E-value=0.0014 Score=68.07 Aligned_cols=101 Identities=21% Similarity=0.196 Sum_probs=55.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
.-+.++|.+|+|||.||..+.+. .......++|+++ .+++..+..... ..+.+.....+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcC
Confidence 34899999999999999999873 3333334566643 345555433211 11222222222 234
Q ss_pred eEEEeCCCCccCccChh--hhHhhhccCCCCcEEEEEccch
Q 042336 281 FLLVLDDVWTEDYSKWE--PFHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 319 (944)
=|||+||+.......|. .+...+...-.+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999543333332 2334443221123588888743
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.02 Score=61.10 Aligned_cols=177 Identities=8% Similarity=-0.014 Sum_probs=102.2
Q ss_pred HHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC------ce--eEEEEeCCCCCHHHHHHHHH
Q 042336 181 EKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF------EK--RIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~--~~wv~vs~~~~~~~~~~~i~ 252 (944)
.-+.+...+..+ .-.....++|+.|+||+++|+.+...---.... .| .-++..+.++|...+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 344555555432 234577899999999999998886521000000 00 001111122221111
Q ss_pred HHhhCCCCCCCCHHHHH---HHHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-hhhhcc-c
Q 042336 253 EALEGSAPNLGELNSLL---QHICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVARMM-E 326 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~ 326 (944)
.........++++. +.+.. -..+++-++|+|++...+....+.+...+..-..++.+|++|.+. .+.... .
T Consensus 80 ---~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 ---EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred ---ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 00001112233333 22221 124667789999997777778888888888877788888877654 343332 2
Q ss_pred ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 327 SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 327 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
-...+.+.++++++..+.+...... . ...+...+..++|.|+.+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~-----~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA-----E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc-----C----hHHHHHHHHHcCCCHHHH
Confidence 3568999999999999988876411 1 112456778899999644
No 185
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.08 E-value=0.0051 Score=75.51 Aligned_cols=136 Identities=16% Similarity=0.263 Sum_probs=78.9
Q ss_pred CccccchhHHHHHHHHhccCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
..++|.+..++.+...+..... .......++.++|+.|+|||++|+.+... ....-...+.++++.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 3589999999999998865321 01123467889999999999999999873 211122334445544222111
Q ss_pred HHHHHhhCCCCCCC---CHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEE
Q 042336 250 AIIEALEGSAPNLG---ELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVT 315 (944)
Q Consensus 250 ~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 315 (944)
...+.+..++.. +...+...++ +....+|+||++....+..+..+...+..+. ..+-||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 122222222211 1122222222 2333499999998777777888887775541 23447777
Q ss_pred ccc
Q 042336 316 TRK 318 (944)
Q Consensus 316 tr~ 318 (944)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 186
>PRK08118 topology modulation protein; Reviewed
Probab=97.07 E-value=0.00022 Score=68.75 Aligned_cols=34 Identities=29% Similarity=0.596 Sum_probs=27.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcCcccc-ccCceeEE
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVI-NNFEKRIW 235 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 235 (944)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999864443 45777776
No 187
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.04 E-value=0.0029 Score=67.26 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=69.9
Q ss_pred cchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 177 GRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
++....+...+++..-.. ....+-+.++|..|+|||.||.++++. ....-..+.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 444444555555543221 113456899999999999999999994 32222345566553 45555554442
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhh--hHhhh-ccC-CCCcEEEEEcc
Q 042336 257 GSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEP--FHNCL-MNC-LHGSKILVTTR 317 (944)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr 317 (944)
.. +.... +. .+ .+-=||||||+-.+....|.. +...+ ... ..+-.+|+||.
T Consensus 205 ~~-----~~~~~---l~-~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 DG-----SVKEK---ID-AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred cC-----cHHHH---HH-Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 21 12222 22 22 345689999997666677864 44433 222 24556888886
No 188
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.02 E-value=0.0074 Score=72.63 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=88.3
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
+...+|.++-+++|+++|............++.++|++|+||||+|+.++.. ....|- -+.++...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 3458999999999998886422111123457899999999999999999872 322331 23334333332221110
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccC----hhhhHhhhccC--------------C-CCcEE
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSK----WEPFHNCLMNC--------------L-HGSKI 312 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~~--------------~-~gs~i 312 (944)
....+. ....+...+... ....-+++||.+....... .+.+...+... . ...-+
T Consensus 396 -~~~~g~-----~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYIGS-----MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccCCC-----CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 001111 111233333322 2234578999985432211 23344443321 1 23334
Q ss_pred EEEccchhhhhc-ccccceEeCCCCChHHHHHHHHHHh
Q 042336 313 LVTTRKETVARM-MESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 313 ivTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
|.||.+..+... .+-..++.+.+++.++-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445543332221 1224578899999988888887764
No 189
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.00 E-value=0.0058 Score=73.89 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=70.1
Q ss_pred ccccchhHHHHHHHHhccCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
.++|.+..++.+...+..... .......++.++|+.|+|||+||+.++.. . +...+.+++++-.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc----
Confidence 478888888888887763211 01223457889999999999999999873 2 23345555554222111
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHhcCC-ceEEEeCCCCccCccChhhhHhhhccC
Q 042336 251 IIEALEGSAPNLGELNSLLQHICLSITGK-KFLLVLDDVWTEDYSKWEPFHNCLMNC 306 (944)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~ 306 (944)
...+-+..+.....++ ...+.+.++.+ .-+|+||++....++.++.+...+..+
T Consensus 526 -~~~lig~~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred -HHHHhcCCCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1112222221111110 11222333333 459999999877777777777776554
No 190
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0059 Score=69.28 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=92.6
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
+.+-+|.++-+++|++.|.-..-...-+-.++.+||++|+|||+|++.+++ .....|-. ++++.--|..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIR--- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIR--- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhc---
Confidence 345789999999999998643321233447999999999999999999998 45445522 2333333332220
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCcc----ChhhhHhhhcc-CC------------CCc-EEE
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYS----KWEPFHNCLMN-CL------------HGS-KIL 313 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~----~~~~l~~~l~~-~~------------~gs-~ii 313 (944)
......-+.. ...+.+.+.+. +.+.-+++||.+.-...+ --..+...|.. .+ -=| .+.
T Consensus 394 --GHRRTYIGam-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 394 --GHRRTYIGAM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred --cccccccccC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 0001111111 12344444433 567789999988332110 01112222211 11 012 344
Q ss_pred EEccc-hh-h-hhcccccceEeCCCCChHHHHHHHHHHh
Q 042336 314 VTTRK-ET-V-ARMMESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 314 vTtr~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
|||-+ -+ + +..++...++++.+.+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44433 22 2 2233456789999999999988888775
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.99 E-value=0.00073 Score=65.76 Aligned_cols=99 Identities=24% Similarity=0.357 Sum_probs=50.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
.-+.++|..|+|||.||..+.+. ....=..+.|+++ .+++.. +..... ....+.... .+. +.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~----l~~~~~-~~~~~~~~~----~l~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDE----LKQSRS-DGSYEELLK----RLK-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHH----HHCCHC-CTTHCHHHH----HHH-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceecc----cccccc-ccchhhhcC----ccc-cc
Confidence 46899999999999999999874 2222234566653 334433 333211 122222222 223 34
Q ss_pred eEEEeCCCCccCccChhh--hHhhhccC-CCCcEEEEEccc
Q 042336 281 FLLVLDDVWTEDYSKWEP--FHNCLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 318 (944)
=||||||+-......|.. +...+... ..+ .+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 578899996543333332 22222211 123 58888874
No 192
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.97 E-value=0.0086 Score=58.12 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.++||-++.++++.-.-.. +...-+.|.|++|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4689999999988776643 3456688999999999998887776
No 193
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.97 E-value=0.024 Score=64.24 Aligned_cols=202 Identities=15% Similarity=0.142 Sum_probs=117.1
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcc------ccccCceeEEEEeCCCCCHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDND------VINNFEKRIWVSVSDPFDEYRV 247 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~~ 247 (944)
.+-+|+.|..+|...+..--.. +...+.+.|.|.+|.|||..+..|.+... --..|+ .+.|+.-.-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3558999999999888654431 34456999999999999999999988421 112342 234444555679999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHh-----cCCceEEEeCCCCccCccChhhhHhhhccC-CCCcEEEEEccc--h
Q 042336 248 AKAIIEALEGSAPNLGELNSLLQHICLSI-----TGKKFLLVLDDVWTEDYSKWEPFHNCLMNC-LHGSKILVTTRK--E 319 (944)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~--~ 319 (944)
...|.+++.+..... ......+..++ +.+..+|++|++..--...-+.+...|.+- .++||++|-+-. .
T Consensus 475 Y~~I~~~lsg~~~~~---~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERVTW---DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCcccH---HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 999999998753221 22233333333 345688888987221011223345555543 478887776521 1
Q ss_pred hh---------hhcccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 320 TV---------ARMMESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 320 ~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
+. +..++ ...+...|.+.++-.++...+..+. ........+-+++.++.-.|-.-.|+...
T Consensus 552 dlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 11 11111 2456777778777777776665433 11223333444555555555444444444
No 194
>CHL00176 ftsH cell division protein; Validated
Probab=96.97 E-value=0.0088 Score=70.03 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=94.2
Q ss_pred CccccchhHHHHHHHHh---ccCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKL---LCENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.++.|.++.++++.+.+ ..+.. -+....+-+.++|++|+|||+||+.++... . .-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 35788877666655543 22211 011234568899999999999999998842 1 123333311 1
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccC----------ccChhh-hHhhhcc-----CCCCc
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTED----------YSKWEP-FHNCLMN-----CLHGS 310 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~-l~~~l~~-----~~~gs 310 (944)
+. ....+ .....+...+.......+++|++||+..-. ...+.. +...+.. ...+.
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 011223333444556788999999994210 011222 2222211 23455
Q ss_pred EEEEEccchhhhhc-c----cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCC
Q 042336 311 KILVTTRKETVARM-M----ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKG 374 (944)
Q Consensus 311 ~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 374 (944)
.||.||...+..+. + .-...+.+...+.++-.++++.++-.... . .......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-S----PDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-c----hhHHHHHHHhcCCC
Confidence 67777765433221 1 12467888888889989999887643111 1 12234567777777
No 195
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.97 E-value=0.00098 Score=67.08 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=29.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEe
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSV 238 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 238 (944)
-.++|+|..|+|||||+..+.. .....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3578999999999999999987 46778877777654
No 196
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.96 E-value=0.039 Score=59.85 Aligned_cols=203 Identities=12% Similarity=0.112 Sum_probs=118.1
Q ss_pred chhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHH-HHHhcCccccccCceeEEEEeCCC---CCHHHHHHHHHH
Q 042336 178 RDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLA-QFVYNDNDVINNFEKRIWVSVSDP---FDEYRVAKAIIE 253 (944)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~ 253 (944)
|.+..++|..||....+ ..|.|.|+-|+||+.|+ .++..+.+ .++.+.|.+- -+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 56788999999975543 68999999999999999 77776422 2555555332 223344444444
Q ss_pred Hhh-----------------------CCCCC-CCCHHHHHHH--------HHH-------------------Hh---cCC
Q 042336 254 ALE-----------------------GSAPN-LGELNSLLQH--------ICL-------------------SI---TGK 279 (944)
Q Consensus 254 ~l~-----------------------~~~~~-~~~~~~~~~~--------l~~-------------------~l---~~k 279 (944)
+++ +...+ ..+.+.-... |++ +| -.+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 442 21111 1122211111 111 01 123
Q ss_pred ceEEEeCCCCccC---ccChhhhHhh---hccCCCCcEEEEEccchhhhh----ccc--ccceEeCCCCChHHHHHHHHH
Q 042336 280 KFLLVLDDVWTED---YSKWEPFHNC---LMNCLHGSKILVTTRKETVAR----MME--SIDILIIKELSELECWSLFKR 347 (944)
Q Consensus 280 ~~LlVlDdvw~~~---~~~~~~l~~~---l~~~~~gs~iivTtr~~~v~~----~~~--~~~~~~l~~L~~~~~~~lf~~ 347 (944)
+-+||+|+.-... ..-|+.+... +-. .+=.+||++|-+..... .+. ..+.+.+...+.+.|..+..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6799999984321 1122333222 222 23457888887655444 332 246788999999999999988
Q ss_pred HhcCCCCC------------CCc----hhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCHH
Q 042336 348 FAFFGRSP------------FEC----KQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTE 393 (944)
Q Consensus 348 ~~~~~~~~------------~~~----~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~ 393 (944)
+....... ... .....-....++..||==.-+..+++.++...++.
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 86543110 000 12233345677889999889999999998776654
No 197
>PRK06921 hypothetical protein; Provisional
Probab=96.95 E-value=0.0034 Score=65.43 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=55.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCcccccc-CceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINN-FEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
...+.++|..|+|||+||.++++. +... -..+++++.. +++..+...+ +.....+ +.+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~-~~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKL-NRM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHH-HHh-c
Confidence 456899999999999999999984 3333 3456676642 3333332221 1111112 222 3
Q ss_pred CceEEEeCCCCc-----cCccChhh--hHhhhccC-CCCcEEEEEccc
Q 042336 279 KKFLLVLDDVWT-----EDYSKWEP--FHNCLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 279 k~~LlVlDdvw~-----~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 318 (944)
+-=||||||+.. +...+|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 456999999922 22334543 44333322 134558888863
No 198
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.94 E-value=0.021 Score=59.75 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=29.2
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHH
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 248 (944)
-+.+.|.+|+|||+||+.+.+ ... ...+.+++....+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHh
Confidence 466899999999999999986 222 234556666665555544
No 199
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.94 E-value=0.025 Score=68.90 Aligned_cols=165 Identities=16% Similarity=0.210 Sum_probs=84.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++|.+..+++|.+++............++.++|++|+|||++|+.+.+. ....|- -++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC--
Confidence 358899999999988764321101123347899999999999999999983 333331 1223332233222110
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccC----hhhhHhhhcc--------C-------CCCcEEE
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSK----WEPFHNCLMN--------C-------LHGSKIL 313 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~--------~-------~~gs~ii 313 (944)
...... .....+...+... ..++-+|+||.+....... ...+...+.. . ..+..+|
T Consensus 393 ---~~~~~g-~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTYVG-AMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCceeC-CCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 000000 1112233333333 2334488999984432110 1223222211 0 0233444
Q ss_pred EEccchh-hhhc-ccccceEeCCCCChHHHHHHHHHHh
Q 042336 314 VTTRKET-VARM-MESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 314 vTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
.||.... +... .....++.+.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554322 1111 1223578899999888888876653
No 200
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0089 Score=61.08 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=57.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGK 279 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 279 (944)
...+.++|.+|+|||+||.++++. ....-..+++++ ..+++..+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 347889999999999999999984 322333455654 34455444443321 1111222 223344 3
Q ss_pred ceEEEeCCCCccCccChhh--hHhhhccC-CCCcEEEEEccc
Q 042336 280 KFLLVLDDVWTEDYSKWEP--FHNCLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 280 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 318 (944)
.=+||+||+......+|.. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4588899996655556664 32333221 123347788763
No 201
>PRK07261 topology modulation protein; Provisional
Probab=96.88 E-value=0.0022 Score=62.14 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=24.1
Q ss_pred EEEEEeeCCchHHHHHHHHhcCcccc-ccCceeEE
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVI-NNFEKRIW 235 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 235 (944)
.|.|+|++|+||||||+.+.....+. -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999987642221 23455555
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0028 Score=73.90 Aligned_cols=123 Identities=18% Similarity=0.303 Sum_probs=77.9
Q ss_pred CccccchhHHHHHHHHhccCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC---ceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF---EKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 246 (944)
..++|.+..+..+.+.+..... +......+....|+.|||||.||+.+... -| +..+-+++|+-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~---- 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYM---- 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHH----
Confidence 3589999999999888754321 13445678888999999999999998762 23 334444444321
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCce-EEEeCCCCccCccChhhhHhhhccC
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKF-LLVLDDVWTEDYSKWEPFHNCLMNC 306 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 306 (944)
-+.-+..|-+.+++-...++ -..+-+..+.++| +|.||++....++..+.+...|.++
T Consensus 562 -EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 562 -EKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred -HHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 11223444455444322222 2234444577877 8889999777777777777777765
No 203
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.84 E-value=0.0016 Score=64.12 Aligned_cols=131 Identities=24% Similarity=0.266 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeC----CC--C---CHH--
Q 042336 177 GRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVS----DP--F---DEY-- 245 (944)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~--~---~~~-- 245 (944)
.+..+....++.|. ...++.+.|.+|.|||.||.+..-+.-..+.|+..+++.-. +. | +.+
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45556666777775 23589999999999999998887664455788887776421 11 0 100
Q ss_pred --HHHHHHHHHhhCCCCCCCCHHHHHHHH------HHHhcCCc---eEEEeCCCCccCccChhhhHhhhccCCCCcEEEE
Q 042336 246 --RVAKAIIEALEGSAPNLGELNSLLQHI------CLSITGKK---FLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILV 314 (944)
Q Consensus 246 --~~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~k~---~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv 314 (944)
-.+.-+...+..-. .....+.+...= ..+++|+. .+||+|++.+..+ .++...+...+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcEEEE
Confidence 11222222222111 111222222100 01456654 4999999976544 445555666678999999
Q ss_pred Eccch
Q 042336 315 TTRKE 319 (944)
Q Consensus 315 Ttr~~ 319 (944)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 87544
No 204
>PRK09183 transposase/IS protein; Provisional
Probab=96.84 E-value=0.0046 Score=64.30 Aligned_cols=100 Identities=20% Similarity=0.218 Sum_probs=52.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..+.|+|.+|+|||+||..+..... ..-..+.+++ ..++...+...... .. ....+.+. ..+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VMAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hcCC
Confidence 4577999999999999999976311 1112333443 22343333222111 11 11222222 2445
Q ss_pred eEEEeCCCCccCccChh--hhHhhhccC-CCCcEEEEEccc
Q 042336 281 FLLVLDDVWTEDYSKWE--PFHNCLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 318 (944)
-++|+||+.......+. .+...+... ..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999653333333 233333221 2344 8888864
No 205
>PRK06526 transposase; Provisional
Probab=96.84 E-value=0.0027 Score=65.57 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=52.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
.-+.|+|.+|+|||+||..+.... ....+ .+.|+ +..+++..+..... .... ...+.+ + .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~-----~~~~---~~~l~~-l-~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHH-----AGRL---QAELVK-L-GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHh-----cCcH---HHHHHH-h-ccC
Confidence 458899999999999999997732 11222 23333 23344444433211 1111 122222 2 235
Q ss_pred eEEEeCCCCccCccChh--hhHhhhccC-CCCcEEEEEccch
Q 042336 281 FLLVLDDVWTEDYSKWE--PFHNCLMNC-LHGSKILVTTRKE 319 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 319 (944)
-+||+||+.......+. .+...+... ..++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 68999999543222222 233333321 2344 88888743
No 206
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.019 Score=59.87 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=102.4
Q ss_pred ccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+=|-++++++|.+...-+-.+ +-+.++=|.+||++|.|||-||++|++. ....| +.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH-----
Confidence 4668899999998876533211 2345677889999999999999999994 43444 333321
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCCcc-----------C---ccChhhhHhhhccCC--CC
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSIT-GKKFLLVLDDVWTE-----------D---YSKWEPFHNCLMNCL--HG 309 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~-----------~---~~~~~~l~~~l~~~~--~g 309 (944)
++++..-+. -..+.+.+.+.-+ ..+.+|++|.+..- + +...-++...+.-+. ..
T Consensus 220 ---ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 ---ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ---HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 122222111 1234444554443 56889999987320 1 111222223333222 34
Q ss_pred cEEEEEccchhhhhc-----ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh----hhHH
Q 042336 310 SKILVTTRKETVARM-----MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP----LAAK 380 (944)
Q Consensus 310 s~iivTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP----lai~ 380 (944)
.|||..|...++.+. -.-++.++++.=+.+.-.++|+-++-.-. ....-+++ .+++.|.|.- .|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e----~la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLE----LLARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHH----HHHHhcCCCchHHHHHHH
Confidence 589998876554332 12256777774444555556766653222 12222333 4566666653 3444
Q ss_pred HHhhhhc
Q 042336 381 TIGSLLR 387 (944)
Q Consensus 381 ~~~~~l~ 387 (944)
+=|++++
T Consensus 366 tEAGm~A 372 (406)
T COG1222 366 TEAGMFA 372 (406)
T ss_pred HHHhHHH
Confidence 4455543
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.82 E-value=0.0032 Score=76.62 Aligned_cols=135 Identities=20% Similarity=0.271 Sum_probs=76.5
Q ss_pred CccccchhHHHHHHHHhccCC---cccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCEN---SEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
..++|.+..++.+.+.+.... ........++.++|+.|+|||.||+.+... .-+.....+-++++.-.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh-----
Confidence 468899999999988875321 112234568899999999999999988762 2111222222333321111
Q ss_pred HHHHHhhCCCCCCC---CHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEE
Q 042336 250 AIIEALEGSAPNLG---ELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVT 315 (944)
Q Consensus 250 ~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 315 (944)
.-...+-+..+... ....+...++ +...-+|+||++...++..++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11122223222211 1122223332 2445699999997666666777777666542 34557777
Q ss_pred cc
Q 042336 316 TR 317 (944)
Q Consensus 316 tr 317 (944)
|.
T Consensus 716 SN 717 (852)
T TIGR03345 716 SN 717 (852)
T ss_pred CC
Confidence 65
No 208
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.82 E-value=0.0061 Score=67.49 Aligned_cols=152 Identities=16% Similarity=0.213 Sum_probs=83.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH-
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI- 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i- 251 (944)
..++||++.++.+...+..+. -|.|.|.+|+|||++|+.+.....-...|... -+..+ .+.+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcHH
Confidence 358999999999999887554 37899999999999999998732212233211 01111 122222211
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhcC---CceEEEeCCCCccCccChhhhHhhhccCC---------CCcEEEEEccch
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSITG---KKFLLVLDDVWTEDYSKWEPFHNCLMNCL---------HGSKILVTTRKE 319 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdvw~~~~~~~~~l~~~l~~~~---------~gs~iivTtr~~ 319 (944)
+..... .. .+.+...| ..-++++|+++..++..-..+...+.... -..++++++.+.
T Consensus 88 i~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 111100 00 01111111 11289999999877766666776663321 122565555542
Q ss_pred hhhh-------cccc-cceEeCCCCChH-HHHHHHHHH
Q 042336 320 TVAR-------MMES-IDILIIKELSEL-ECWSLFKRF 348 (944)
Q Consensus 320 ~v~~-------~~~~-~~~~~l~~L~~~-~~~~lf~~~ 348 (944)
... .+.- .-.+.+++++++ +-.+++...
T Consensus 157 -LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 -LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 1111 236778899754 447777653
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.041 Score=59.42 Aligned_cols=179 Identities=9% Similarity=0.038 Sum_probs=103.4
Q ss_pred HHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc---cccc-----cCceeEEEEeCCCCCHHHHHHHHH
Q 042336 181 EKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN---DVIN-----NFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~-----~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.-+++...+..+ .-..-+.++|+.|+||+++|..+...- .... .-...-++....++|+..+.
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~---- 80 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT---- 80 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe----
Confidence 345566666432 235678899999999999998875521 0000 00000111112222211110
Q ss_pred HHhhCCCC-CCCCHHHHHH---HHHH-HhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-hhhhc-c
Q 042336 253 EALEGSAP-NLGELNSLLQ---HICL-SITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVARM-M 325 (944)
Q Consensus 253 ~~l~~~~~-~~~~~~~~~~---~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~ 325 (944)
.... ....++++.. .+.. -..+++-++|+|++...+....+.+...+..-..++.+|++|.+. .+... .
T Consensus 81 ----p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 81 ----PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ----cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000 1122333332 2221 124677799999997777777888888888877788877777654 34433 2
Q ss_pred cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 326 ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 326 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
.-...+.+.+++.++..+.+.... + .. .+.+..++..++|.|..+..
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~----~~----~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T----MS----QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C----CC----HHHHHHHHHHcCCCHHHHHH
Confidence 335678999999999988886542 1 11 33366789999999975443
No 210
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.73 E-value=0.017 Score=56.73 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=71.4
Q ss_pred cCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH
Q 042336 171 NVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
+-..++|.|..++.+++--..=. .+....-|.+||.-|+|||+|++++.+ .+.+..-. -|.|+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k---------- 121 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDK---------- 121 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcH----------
Confidence 34468999999888876432111 112234578999999999999999988 34443322 222222
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCc-cCccChhhhHhhhccC---CCCcEEEEEccc
Q 042336 251 IIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWT-EDYSKWEPFHNCLMNC---LHGSKILVTTRK 318 (944)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~---~~gs~iivTtr~ 318 (944)
.+..++..+...++ ....||+|+.||+.- .+...+..++..+.-+ .+...++..|.+
T Consensus 122 ---------~dl~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 ---------EDLATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ---------HHHhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11122222333332 147899999999943 2345677777777644 244455555544
No 211
>PRK04132 replication factor C small subunit; Provisional
Probab=96.72 E-value=0.029 Score=67.16 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=98.2
Q ss_pred eCCchHHHHHHHHhcCccccccC-ceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeC
Q 042336 208 MGGIGKTTLAQFVYNDNDVINNF-EKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLD 286 (944)
Q Consensus 208 ~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 286 (944)
+.++||||+|..++++. ....+ ...+-+++|+....+ ..++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 67899999999999842 11222 245667777655544 333444433221110 01245799999
Q ss_pred CCCccCccChhhhHhhhccCCCCcEEEEEccch-hhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHH
Q 042336 287 DVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEI 364 (944)
Q Consensus 287 dvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 364 (944)
++...+....+.+...+......+++|++|.+. .+.... .....+.+.+++.++-...+...+-..+...+ ++.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 997766667777888777655667777766543 332222 23568999999999998888766543222112 456
Q ss_pred HHHHHHhhCCChhhHHHH
Q 042336 365 GRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 365 ~~~i~~~~~GlPlai~~~ 382 (944)
...|++.++|.+..+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 788999999988655444
No 212
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.72 E-value=0.026 Score=65.19 Aligned_cols=178 Identities=16% Similarity=0.122 Sum_probs=91.2
Q ss_pred CccccchhHHHHHHHHhc---cCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLL---CENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+++|.+..++++.+.+. .+.. .+....+-+.++|++|+|||+||+.+++.. ... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 467888877666655443 1110 011233458899999999999999998842 222 233321 11
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccC----------ccChhhhHh----hhc--cCCCCc
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTED----------YSKWEPFHN----CLM--NCLHGS 310 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~l~~----~l~--~~~~gs 310 (944)
+. ....+ .....+...+.......+.+|++||+..-. ...+..... .+. ....+.
T Consensus 124 ~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11111 011222333333445677899999983310 011122211 111 112345
Q ss_pred EEEEEccchhhhh-cc----cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC
Q 042336 311 KILVTTRKETVAR-MM----ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL 375 (944)
Q Consensus 311 ~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 375 (944)
.||.||......+ .+ .-...+.+...+.++-.++|..+...... .. ......+++.+.|.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~----~~~l~~la~~t~G~ 259 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-AP----DVDLKAVARRTPGF 259 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Cc----chhHHHHHHhCCCC
Confidence 5666675443211 11 12457888888888888888877533211 11 11234677777774
No 213
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.68 E-value=0.0023 Score=56.57 Aligned_cols=21 Identities=48% Similarity=0.607 Sum_probs=18.7
Q ss_pred EEEEeeCCchHHHHHHHHhcC
Q 042336 203 ISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~ 223 (944)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998873
No 214
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.68 E-value=0.058 Score=58.83 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=32.8
Q ss_pred hhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 179 DEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 179 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+.-.+.+.+.+..... ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456677777765431 46789999999999999999999874
No 215
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.64 E-value=0.0068 Score=74.21 Aligned_cols=138 Identities=16% Similarity=0.231 Sum_probs=76.9
Q ss_pred CccccchhHHHHHHHHhccCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
..++|.+..++.+...+..... ........+.++|+.|+|||+||+.+.+. .-+.-...+-++.++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 4588999999999887753211 01223456778999999999999998762 2111123344444432221111
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc-eEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEcc
Q 042336 250 AIIEALEGSAPNLGELNSLLQHICLSITGKK-FLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTTR 317 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 317 (944)
..+.+..+.....++ ...+.+.++.++ .+|+||++...++..++.+...+..+. ..+-||+||.
T Consensus 585 ---~~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred ---HHhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 112222221111111 112333344444 589999997777777777777776541 3445666665
Q ss_pred c
Q 042336 318 K 318 (944)
Q Consensus 318 ~ 318 (944)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 3
No 216
>PRK04296 thymidine kinase; Provisional
Probab=96.62 E-value=0.0037 Score=61.83 Aligned_cols=113 Identities=12% Similarity=-0.001 Sum_probs=61.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCC--CCCHHHHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPN--LGELNSLLQHICLSITG 278 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 278 (944)
.++.|+|..|.||||+|..+... ...+-..++.+. ..++.+.....++.+++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47789999999999999888773 333333333331 2222222233445555432211 2233445555544 334
Q ss_pred CceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh
Q 042336 279 KKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET 320 (944)
Q Consensus 279 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 320 (944)
+.-+||+|.+..-+.++..++...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5569999999432212122233332 245788999998754
No 217
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.036 Score=59.65 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=66.7
Q ss_pred cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc-hhhhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCC
Q 042336 277 TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK-ETVARMM-ESIDILIIKELSELECWSLFKRFAFFGRS 354 (944)
Q Consensus 277 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 354 (944)
.+++-++|+|++...+...++.+...+..-.+++.+|++|.+ ..+.... .-...+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~- 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V- 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C-
Confidence 355668999999887888889999999887778877766655 4443332 235689999999999999887641 1
Q ss_pred CCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 355 PFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
. . ...++..++|.|..+..+
T Consensus 206 --~--~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --A--D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --C--h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999765544
No 218
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.04 Score=60.17 Aligned_cols=150 Identities=18% Similarity=0.223 Sum_probs=87.5
Q ss_pred CCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHh
Q 042336 197 QNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSI 276 (944)
Q Consensus 197 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 276 (944)
...+..+.+.|++|+|||+||..++. ...|+.+=-++-.+ + ++.+ +......+.....+.-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~------m-------iG~s--EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPED------M-------IGLS--ESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHH------c-------cCcc--HHHHHHHHHHHHHHhh
Confidence 34567788999999999999999987 35676543332111 0 0000 1111223334444555
Q ss_pred cCCceEEEeCCCCccCccChhhhH------------hhhccCC-CCcE--EEEEccchhhhhcccc----cceEeCCCCC
Q 042336 277 TGKKFLLVLDDVWTEDYSKWEPFH------------NCLMNCL-HGSK--ILVTTRKETVARMMES----IDILIIKELS 337 (944)
Q Consensus 277 ~~k~~LlVlDdvw~~~~~~~~~l~------------~~l~~~~-~gs~--iivTtr~~~v~~~~~~----~~~~~l~~L~ 337 (944)
+..--.||+||+.. .-+|..+. -.+.... .|-| |+-||....+...|+. ...+.++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 77778999999932 23333322 2222222 3444 4446667788887764 4578888888
Q ss_pred h-HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhh
Q 042336 338 E-LECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKC 372 (944)
Q Consensus 338 ~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~ 372 (944)
. ++..+.++..-. ..+...+.++++...+|
T Consensus 674 ~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 7 777777766431 12334456666666666
No 219
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.60 E-value=0.0019 Score=68.79 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=46.9
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc-----cccCceeEE
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV-----INNFEKRIW 235 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-----~~~F~~~~w 235 (944)
.++|.++.++++++++...........+++.++|++|+||||||+.+.+.... .+.|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 79999999999999997654322345689999999999999999999874222 234555556
No 220
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.58 E-value=0.0065 Score=59.47 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=28.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEE
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWV 236 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 236 (944)
...+|.+.|+.|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999988 444455555555
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.55 E-value=0.0054 Score=62.02 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=37.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
.-+++.|+|.+|+|||+++.++... ....-..++|++... +++..+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4579999999999999999888763 323456789999876 66666544
No 222
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.55 E-value=0.0016 Score=64.63 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=51.1
Q ss_pred hccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccc
Q 042336 549 FMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTC 628 (944)
Q Consensus 549 ~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i 628 (944)
.+..+..+..++++++.+......++...+.+-.+|++.+++.-.......++|+++. -|-..+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~----------------~Ll~aL 88 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV----------------MLLKAL 88 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH----------------HHHHHH
Confidence 3334566666666666544323334444455556666666655432222223333211 111233
Q ss_pred cCCCcccEEEecCccCCcccCc----ccccCCCCceeeccccccc
Q 042336 629 CELFNLQTIEIEGCYNLNRLPQ----GVGKLVNLRHLIFDVNFVE 669 (944)
Q Consensus 629 ~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~~ 669 (944)
-+|++||+.+|+.|-.-...|+ -|.+-+.|.||.+++|.++
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 4555666666665543333333 2345566777777665444
No 223
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.53 E-value=0.01 Score=63.70 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=63.7
Q ss_pred HHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccc-cCce-eEEEEeCCC-CCHHHHHHHHHHHhhC
Q 042336 181 EKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVIN-NFEK-RIWVSVSDP-FDEYRVAKAIIEALEG 257 (944)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~ 257 (944)
-..++++.+..-. .-..+.|+|.+|+|||||++.+.+. +.. +-+. ++|+.+.+. .++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3445777775321 2245689999999999999998873 322 2233 467777654 4778888888877765
Q ss_pred CCCCCCCHHH-----HHHHHHHHh--cCCceEEEeCCC
Q 042336 258 SAPNLGELNS-----LLQHICLSI--TGKKFLLVLDDV 288 (944)
Q Consensus 258 ~~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 288 (944)
...+...... ....+.+++ ++++.+||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4332221111 111222222 689999999999
No 224
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.48 E-value=0.0088 Score=61.25 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=35.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRV 247 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 247 (944)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999988763 22334678899887 5665554
No 225
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.48 E-value=0.017 Score=54.58 Aligned_cols=125 Identities=19% Similarity=0.247 Sum_probs=72.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE---------------------eCC-----------------
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS---------------------VSD----------------- 240 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------------vs~----------------- 240 (944)
.-..+.|+|..|.|||||.+.+|...+.. ...+|+. |=+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34689999999999999999999853321 1223321 000
Q ss_pred ----CCCHHHHHHHHHHHh---hCC-----CCC-CCCHHHHHHHHHHHhcCCceEEEeCCCCc--cCccChhhhHhhhcc
Q 042336 241 ----PFDEYRVAKAIIEAL---EGS-----APN-LGELNSLLQHICLSITGKKFLLVLDDVWT--EDYSKWEPFHNCLMN 305 (944)
Q Consensus 241 ----~~~~~~~~~~i~~~l---~~~-----~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdvw~--~~~~~~~~l~~~l~~ 305 (944)
.....++-+...+.+ +.. -+. .+.-++..-.|.+.+-+++-+++=|.--. +....|+.+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 112233333333332 221 122 22334444567777789999999995311 122355554444344
Q ss_pred CCCCcEEEEEccchhhhhccc
Q 042336 306 CLHGSKILVTTRKETVARMME 326 (944)
Q Consensus 306 ~~~gs~iivTtr~~~v~~~~~ 326 (944)
+..|+-||++|.+.+..+.+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 557999999999988777653
No 226
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.015 Score=63.51 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=83.3
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccc-------------------cCceeE
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVIN-------------------NFEKRI 234 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 234 (944)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+.-.-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677778888888876432 1233588999999999999999887411000 113344
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcE
Q 042336 235 WVSVSDPFD---EYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSK 311 (944)
Q Consensus 235 wv~vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 311 (944)
.+..+.... ..+..+++.+....... .++.-++++|++.....+.-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444333 22223333322221110 36678999999966555555667777766677888
Q ss_pred EEEEccch-hhhhcc-cccceEeCCC
Q 042336 312 ILVTTRKE-TVARMM-ESIDILIIKE 335 (944)
Q Consensus 312 iivTtr~~-~v~~~~-~~~~~~~l~~ 335 (944)
+|++|... .+.... .....+.+.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88888732 233222 2244666666
No 227
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.47 E-value=0.024 Score=67.82 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=68.9
Q ss_pred ccccchhHHHHHHHHhccCC---cccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCEN---SEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
.++|.++.++.+.+.+.... .........+.++|+.|+|||++|+.+... .. ...+.+++++-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----c
Confidence 47899999988888876321 101223457899999999999999999873 22 223444544322211 1
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCCccCccChhhhHhhhccC
Q 042336 251 IIEALEGSAPNLGELNSLLQHICLSIT-GKKFLLVLDDVWTEDYSKWEPFHNCLMNC 306 (944)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~~~~~~l~~~l~~~ 306 (944)
...+-+..+.....+ ....+.+.++ ....+|+||++....++.++.+...+..+
T Consensus 530 -~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 -VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred -HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 122222222111100 0111222223 33469999999776666777777766543
No 228
>PHA00729 NTP-binding motif containing protein
Probab=96.42 E-value=0.01 Score=59.20 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=21.7
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457889999999999999999873
No 229
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.38 E-value=0.015 Score=54.80 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=63.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC---CCCHHHHHHHHHHHh-----hCCC-CCCCCH------
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD---PFDEYRVAKAIIEAL-----EGSA-PNLGEL------ 265 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l-----~~~~-~~~~~~------ 265 (944)
..|-|++-.|.||||+|....- +..++=..+.+|.+-. ......+++.+ ..+ +... ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888899999999976655 2222222344444322 23344444333 001 0000 000111
Q ss_pred -HHHHHHHHHHhcC-CceEEEeCCCCcc---CccChhhhHhhhccCCCCcEEEEEccchh
Q 042336 266 -NSLLQHICLSITG-KKFLLVLDDVWTE---DYSKWEPFHNCLMNCLHGSKILVTTRKET 320 (944)
Q Consensus 266 -~~~~~~l~~~l~~-k~~LlVlDdvw~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 320 (944)
.......++.+.. .-=|||||++-.. ..-..+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122223334444 4459999998321 23456677777877777889999999754
No 230
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.37 E-value=0.029 Score=57.98 Aligned_cols=172 Identities=17% Similarity=0.180 Sum_probs=94.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC-ccccccCceeEEEEeCCCCCHH-HHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND-NDVINNFEKRIWVSVSDPFDEY-RVAKA 250 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~~-~~~~~ 250 (944)
..++|-.++..++-.++....- .+...-+.|+|+.|.|||+|...+..+ +++.+ ..+-|........+ -.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E---~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGE---NFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCC---eEEEEEECccchhhHHHHHH
Confidence 4588988888888887754321 123345789999999999999888775 22333 33445555443332 24555
Q ss_pred HHHHhh----CCCCCCCCHHHHHHHHHHHhc------CCceEEEeCCCCccCccChhh-hHhhhcc----CCCCcEEEEE
Q 042336 251 IIEALE----GSAPNLGELNSLLQHICLSIT------GKKFLLVLDDVWTEDYSKWEP-FHNCLMN----CLHGSKILVT 315 (944)
Q Consensus 251 i~~~l~----~~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdvw~~~~~~~~~-l~~~l~~----~~~gs~iivT 315 (944)
|.+++. .......+..+....+...|+ +.++++|+|.+.-.-+..-.. +...|.. ..|=+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 555553 222222223333444444442 335788888773321111111 2222221 2355678889
Q ss_pred ccchhh-------hhcccccceEeCCCCChHHHHHHHHHHh
Q 042336 316 TRKETV-------ARMMESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 316 tr~~~v-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
||-... -....-..++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 985432 2222222355566777777777777654
No 231
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.36 E-value=0.0017 Score=60.80 Aligned_cols=89 Identities=24% Similarity=0.185 Sum_probs=48.9
Q ss_pred EEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceE
Q 042336 203 ISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFL 282 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 282 (944)
|.++|.+|+|||+||+.++.. .. ....-+.++...+..+++...--. ... .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 679999999999999999873 21 123346778877777765432211 000 000000000000 17889
Q ss_pred EEeCCCCccCccChhhhHhhhc
Q 042336 283 LVLDDVWTEDYSKWEPFHNCLM 304 (944)
Q Consensus 283 lVlDdvw~~~~~~~~~l~~~l~ 304 (944)
+|||++...+...+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999996544444555555544
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.0044 Score=64.04 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=48.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGK 279 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 279 (944)
..-+.++|.+|+|||.||.++.+. +...--.+.++++. +++.++...... . .....+.+.+ .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~------el~~~Lk~~~~~----~----~~~~~l~~~l-~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAP------DLLSKLKAAFDE----G----RLEEKLLREL-KK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHH------HHHHHHHHHHhc----C----chHHHHHHHh-hc
Confidence 345889999999999999999994 33332345566543 455555554432 1 1122222211 23
Q ss_pred ceEEEeCCCCccCccChh
Q 042336 280 KFLLVLDDVWTEDYSKWE 297 (944)
Q Consensus 280 ~~LlVlDdvw~~~~~~~~ 297 (944)
-=||||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 348999999655444554
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.014 Score=62.73 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=55.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
.-+.++|..|+|||+||.++++. ....-..++++++.. ++..+...-.. ...+.... .+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~~~~---~~~~~~~~----~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREIRFN---NDKELEEV----YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHHHhc---cchhHHHH----HHHhc-cC
Confidence 56899999999999999999984 322333566665432 33333221111 11111111 12222 23
Q ss_pred eEEEeCCCCccCccChhh--hHhhhccC-CCCcEEEEEccc
Q 042336 281 FLLVLDDVWTEDYSKWEP--FHNCLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 318 (944)
=||||||+.......|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996543344433 33333322 234568888864
No 234
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.30 E-value=0.031 Score=55.40 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=86.8
Q ss_pred CccccchhHHHH---HHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKNT---LKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
.++||.++.+.+ |++.|..++.=++-.++-|..+|++|.|||.+|+++.+..++ .| +.|. ..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk-------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK-------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec-------hHH
Confidence 468898876654 667776554334556788999999999999999999995332 22 1111 111
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccC--------ccChhhhHhhhc------cCCCCcEEEE
Q 042336 250 AIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTED--------YSKWEPFHNCLM------NCLHGSKILV 314 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~------~~~~gs~iiv 314 (944)
-|-+..+ +....++.+.+ .-+..++++++|.+..-. ..+..++..+|. ..+.|...|-
T Consensus 187 liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1111111 11222333333 335678999999772210 012222222222 1235666666
Q ss_pred Eccchhhhhcc-cc--cceEeCCCCChHHHHHHHHHHhc
Q 042336 315 TTRKETVARMM-ES--IDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 315 Ttr~~~v~~~~-~~--~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
.|...+..+.. .. ..-++...-+++|-.+++...+-
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 66655543321 11 34566666678888888877763
No 235
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.28 E-value=0.02 Score=58.71 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=53.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccC------ceeEEEEeCCCCCHHHHHHHHHHHhhCCC---------CCCC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNF------EKRIWVSVSDPFDEYRVAKAIIEALEGSA---------PNLG 263 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~ 263 (944)
.-.++.|+|.+|+|||+||.+++... ...- ..++|++....++...+. .+.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 45799999999999999999887531 1222 567899988877765554 3333322110 0112
Q ss_pred CHHHHHHHHHHHh----cCCceEEEeCCC
Q 042336 264 ELNSLLQHICLSI----TGKKFLLVLDDV 288 (944)
Q Consensus 264 ~~~~~~~~l~~~l----~~k~~LlVlDdv 288 (944)
+.+++...+.+.. ..+.-+||+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 3444444444433 234558999987
No 236
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.27 E-value=0.0081 Score=57.78 Aligned_cols=130 Identities=17% Similarity=0.101 Sum_probs=64.9
Q ss_pred cccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHH
Q 042336 175 VRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEA 254 (944)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 254 (944)
++|.+..+.++.+.+..... ...-|.|+|..|+||+.+|+.+++..... -..-+-|+++. .+.+.+- .+
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~-~~~~~~e----~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAA-LPEELLE----SE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTT-S-HHHHH----HH
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhh-hhcchhh----hh
Confidence 46788888888877754432 12446699999999999999999842111 11223344443 2333222 22
Q ss_pred hhCCCCCC-CCH-HHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEccc
Q 042336 255 LEGSAPNL-GEL-NSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTTRK 318 (944)
Q Consensus 255 l~~~~~~~-~~~-~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 318 (944)
+.+..... ... ......+.. -..=-|+||++..-....-..+...+..+. ...|||.||..
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred hhccccccccccccccCCceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 32221110 000 000112221 223367889996655444445656555331 24588888874
No 237
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.26 E-value=0.023 Score=65.72 Aligned_cols=43 Identities=33% Similarity=0.467 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998877533 224567999999999999999976
No 238
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.035 Score=62.92 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
+.+-+|.++-+++|++++.-..-.+.-+-+++..+|++|+|||.+|+.++. .....|. -++|+.-.|+.+|--
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkG-- 482 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKG-- 482 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhcc--
Confidence 345789999999999988644322344568999999999999999999998 3433441 235555545444310
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCC
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDV 288 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 288 (944)
........ -...+++.++.. +..+-|+.+|.|
T Consensus 483 ---HRRTYVGA-MPGkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 483 ---HRRTYVGA-MPGKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred ---cceeeecc-CChHHHHHHHhh-CCCCceEEeehh
Confidence 00011111 112334444333 455678888988
No 239
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.23 E-value=0.0031 Score=57.29 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+|+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 240
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.22 E-value=0.017 Score=58.87 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=32.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFD 243 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 243 (944)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4578999999999999999998763 222334677887665554
No 241
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.045 Score=59.00 Aligned_cols=104 Identities=11% Similarity=0.122 Sum_probs=52.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC-CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP-FDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
+.++|+++|.+|+||||++.+++.. ....=..+..++.... ....+-++...+.++.+.....+...+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4579999999999999999999763 2222123445554321 112222333333333322222344445544443322
Q ss_pred C-CceEEEeCCCCcc--CccChhhhHhhhc
Q 042336 278 G-KKFLLVLDDVWTE--DYSKWEPFHNCLM 304 (944)
Q Consensus 278 ~-k~~LlVlDdvw~~--~~~~~~~l~~~l~ 304 (944)
. +.=+|++|-.-.. +......+...+.
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 1 2347778876432 1223444544444
No 242
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.21 E-value=0.026 Score=68.63 Aligned_cols=179 Identities=14% Similarity=0.115 Sum_probs=90.8
Q ss_pred ccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
++.|.+..++++.+++...-.. +-...+-+.++|.+|+|||+||+.+++. ....| +.++.. .
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~----~ 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP----E 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----H
Confidence 4789999999988876422110 1123456889999999999999999883 22222 222211 1
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc------c-----ChhhhHhhhccC-CCCcEEEE
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDY------S-----KWEPFHNCLMNC-LHGSKILV 314 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~------~-----~~~~l~~~l~~~-~~gs~iiv 314 (944)
+. ... .. .....+...+.......+.+|++|++..-.. . ....+...+... ..+..++|
T Consensus 248 i~----~~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 248 IM----SKY----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred Hh----ccc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 11 000 00 0111222233333356678999999832100 0 112233333221 22334444
Q ss_pred -Eccchh-hhhccc----ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh
Q 042336 315 -TTRKET-VARMME----SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL 377 (944)
Q Consensus 315 -Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 377 (944)
||.... +...+. -...+.+...+.++-.+++....-.... .. ......+++.+.|.--
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cc----ccCHHHHHHhCCCCCH
Confidence 444322 211111 1346777777888888888755422111 11 1124557777877643
No 243
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.017 Score=64.94 Aligned_cols=189 Identities=16% Similarity=0.206 Sum_probs=112.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
++++|-+.-...|...+.... -..--...|.-|+||||+|+-++..-.-.. | ...+++..=...+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 357999999999999886432 233455789999999999988866211110 0 1111121112222222
Q ss_pred HH-----h---hCCCCCCCCHHHHHHHHHHH-hcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-hhh
Q 042336 253 EA-----L---EGSAPNLGELNSLLQHICLS-ITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVA 322 (944)
Q Consensus 253 ~~-----l---~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 322 (944)
.. + ..+.....+++++...+... .+++.=+.|+|.|.--+...|..+...+..-....+.|+.|.+. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 0 00111222233333322211 14555589999997667778888888887766677777766654 333
Q ss_pred hc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh
Q 042336 323 RM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL 377 (944)
Q Consensus 323 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 377 (944)
.. ......|.++.++.++-...+...+-......+ ++....|++..+|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 32 234678999999999999988887755544333 4445556677776443
No 244
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.15 E-value=0.019 Score=59.36 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=37.2
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccc----cCceeEEEEeCCCCCHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVIN----NFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~ 249 (944)
.-.++.|+|.+|+|||+||.+++-...... .-..++|++..+.++..++.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 457999999999999999998874312222 136789999888777655433
No 245
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.15 E-value=0.015 Score=57.55 Aligned_cols=87 Identities=20% Similarity=0.133 Sum_probs=50.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeC-CCCCHHHHHHHHHHHhhCCC---CCCCCHHHHHHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVS-DPFDEYRVAKAIIEALEGSA---PNLGELNSLLQHICLS 275 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 275 (944)
++|+.++|+.|+||||.+.+++... ..+-..+..++.. ......+-++..++.++.+. ....+.........+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH--hhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999998887743 2233345667664 33455667777788777542 1122333333322222
Q ss_pred hcCC-ceEEEeCCC
Q 042336 276 ITGK-KFLLVLDDV 288 (944)
Q Consensus 276 l~~k-~~LlVlDdv 288 (944)
.+.+ .=+|++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 2333 347777765
No 246
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.04 Score=59.21 Aligned_cols=71 Identities=8% Similarity=0.086 Sum_probs=48.0
Q ss_pred CCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh-hhhcc-cccceEeCCCCChHHHHHHHHHH
Q 042336 278 GKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET-VARMM-ESIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
+++-++|+|++..-+...-..+...+.....++.+|++|.+.. +.... .....+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4455667788876666666677777766555666777776543 43332 22568899999999999888654
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.06 Score=61.08 Aligned_cols=155 Identities=14% Similarity=0.051 Sum_probs=81.1
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC--CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHh
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP--FDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSI 276 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 276 (944)
...-|.|.|..|+|||+||+++++... +...-.+..|+++.- ...+.+++. +...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 345688999999999999999998533 444445667776642 122222222 122233456
Q ss_pred cCCceEEEeCCCCc------cCccChhhhHhhhcc---------CCCCcE--EEEEccchh-hhhccc----ccceEeCC
Q 042336 277 TGKKFLLVLDDVWT------EDYSKWEPFHNCLMN---------CLHGSK--ILVTTRKET-VARMME----SIDILIIK 334 (944)
Q Consensus 277 ~~k~~LlVlDdvw~------~~~~~~~~l~~~l~~---------~~~gs~--iivTtr~~~-v~~~~~----~~~~~~l~ 334 (944)
...+-+|||||+.- .+..+|......+.. ...+.+ +|-|..... ...... -..+..+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 78899999999831 112333332222111 123444 333333322 111111 13466788
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC
Q 042336 335 ELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL 375 (944)
Q Consensus 335 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 375 (944)
.+..++--++++...-..... ...+...-+..+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~----~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSD----ITMDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhh----hhhHHHHHHHHhcCCc
Confidence 888877777766543211111 1122223377777774
No 248
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.10 E-value=0.033 Score=54.54 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=59.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhh--CCC------------CCCCCH-
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALE--GSA------------PNLGEL- 265 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~--~~~------------~~~~~~- 265 (944)
.+++|.|..|.|||||++.+..-... -...+++.-. +........-+.++ .+. ....+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 57999999999999999999873211 1122222110 11111000001110 000 111122
Q ss_pred HHHHHHHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccchhhhh
Q 042336 266 NSLLQHICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRKETVAR 323 (944)
Q Consensus 266 ~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 323 (944)
+...-.+.+.+-.++-++++|+.... |....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22223445566778889999987432 22333444444443334667888887766554
No 249
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.09 E-value=0.016 Score=65.74 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=61.1
Q ss_pred CCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHh
Q 042336 197 QNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSI 276 (944)
Q Consensus 197 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 276 (944)
.+.-+++.++|++|+||||||+-++++.. ..++=|++|+.-+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 45668999999999999999999988422 246677888877777776666665543321111
Q ss_pred cCCceEEEeCCCCccCccChhhhHhhhc
Q 042336 277 TGKKFLLVLDDVWTEDYSKWEPFHNCLM 304 (944)
Q Consensus 277 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~ 304 (944)
.+++.-||+|.+........+.+...+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2678889999996654333444555444
No 250
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.09 E-value=0.00076 Score=75.71 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=75.3
Q ss_pred cccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcc-cccCCCCcee
Q 042336 583 CLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNLRHL 661 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 661 (944)
.|.+-+.+.|. +..+-.++.-+++|+.|||++|++...- .+..|++|++|||+.|. +..+|.- ...+. |+.|
T Consensus 165 ~L~~a~fsyN~----L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNR----LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hHhhhhcchhh----HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heee
Confidence 35566666666 6666678888999999999999987654 78889999999999998 8888762 23333 9999
Q ss_pred eccccccccccccccCCCCCCcCC
Q 042336 662 IFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 662 ~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
++++|.++.+ .+|.+|.+|+.|+
T Consensus 238 ~lrnN~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 238 NLRNNALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred eecccHHHhh-hhHHhhhhhhccc
Confidence 9999888776 5788899998887
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.08 E-value=0.021 Score=54.89 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=29.3
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCC
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFD 243 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 243 (944)
++.|+|.+|+||||++..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3679999999999999999873 222335677887765543
No 252
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.06 E-value=0.0043 Score=57.88 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=60.9
Q ss_pred ccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc-cccCceeEEEEeCCCCCHHHHHHHHHHH
Q 042336 176 RGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV-INNFEKRIWVSVSDPFDEYRVAKAIIEA 254 (944)
Q Consensus 176 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 254 (944)
||+...++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|... .+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~------------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL------------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-------------
Confidence 4666677777766654321 2345789999999999999999874222 1122110 11110
Q ss_pred hhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccC-CCCcEEEEEccch
Q 042336 255 LEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNC-LHGSKILVTTRKE 319 (944)
Q Consensus 255 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~ 319 (944)
. . .+.+. -+.--++|+|+..-+......+...+... ....|+|.||+..
T Consensus 61 ---------~----~-~~l~~--a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 61 ---------P----A-ELLEQ--AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------C----H-HHHHH--CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------c----H-HHHHH--cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 0 1 11111 24456778998665555556677777643 5678999998743
No 253
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.05 E-value=0.014 Score=54.90 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 254
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.03 E-value=0.049 Score=53.41 Aligned_cols=119 Identities=15% Similarity=0.162 Sum_probs=64.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE---eCCCCCHHHHHH------HHHHHhhCC-----CCCCCCH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS---VSDPFDEYRVAK------AIIEALEGS-----APNLGEL 265 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~------~i~~~l~~~-----~~~~~~~ 265 (944)
-.+++|+|..|.|||||++.++.-. ......+++. +. ..+...... ++++.++.. .....+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3589999999999999999998732 2233334332 21 112222211 134444322 1112222
Q ss_pred -HHHHHHHHHHhcCCceEEEeCCCCc-cCccChhhhHhhhccCC-C-CcEEEEEccchhhh
Q 042336 266 -NSLLQHICLSITGKKFLLVLDDVWT-EDYSKWEPFHNCLMNCL-H-GSKILVTTRKETVA 322 (944)
Q Consensus 266 -~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~-~-gs~iivTtr~~~v~ 322 (944)
+...-.+.+.+-..+-++++|+--. -|......+...+.... . |.-||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2223345566777889999998732 13334444555554322 2 56677787765543
No 255
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.02 E-value=0.018 Score=59.73 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=39.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCcccc----ccCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVI----NNFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
-.+.=|+|.+|+|||+|+.+++-...+. +.=..++|++-...|+++++. +|+++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 3588999999999999997775432222 122468999999999988875 4666543
No 256
>PRK13695 putative NTPase; Provisional
Probab=95.98 E-value=0.0081 Score=58.63 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEEeeCCchHHHHHHHHhcC
Q 042336 203 ISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~ 223 (944)
++|+|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998774
No 257
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.93 E-value=0.031 Score=54.15 Aligned_cols=122 Identities=14% Similarity=0.141 Sum_probs=64.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCc-c--ccc---cCc--eeEEEEeCCCCCHHHHHHHHHHHhhCCC------CCCCCH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDN-D--VIN---NFE--KRIWVSVSDPFDEYRVAKAIIEALEGSA------PNLGEL 265 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~-~--~~~---~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~ 265 (944)
-.+++|+|..|+|||||.+.+..+. . +.. .|. .+.|+ .+ .+.++.++... ....+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999886321 1 111 111 12232 22 34555555321 111222
Q ss_pred H-HHHHHHHHHhcCC--ceEEEeCCCCcc-CccChhhhHhhhccC-CCCcEEEEEccchhhhhcccccceEeC
Q 042336 266 N-SLLQHICLSITGK--KFLLVLDDVWTE-DYSKWEPFHNCLMNC-LHGSKILVTTRKETVARMMESIDILII 333 (944)
Q Consensus 266 ~-~~~~~l~~~l~~k--~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 333 (944)
. ...-.+.+.+-.+ +-++++|+.-.. +......+...+... ..|..||++|.+...... ..+++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2 2222344555666 778889986321 333344444444432 246668888877665542 3444444
No 258
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.93 E-value=0.013 Score=62.19 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=53.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCCCCHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSA-----PNLGELNSLLQHIC 273 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 273 (944)
.-+++-|+|++|+||||||.+++.. ....-..++||+..+.+++. .+++++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 4578899999999999999887753 22334567899887777653 233343221 11223455555554
Q ss_pred HHhc-CCceEEEeCCC
Q 042336 274 LSIT-GKKFLLVLDDV 288 (944)
Q Consensus 274 ~~l~-~k~~LlVlDdv 288 (944)
...+ +..-+||+|.|
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 4443 45679999987
No 259
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.91 E-value=0.02 Score=60.81 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=53.7
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCCCCHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSA-----PNLGELNSLLQHIC 273 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 273 (944)
.-+++-|+|.+|+||||||.++... ....-..++|++..+.++.. .+++++... ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999887763 22333567899887766653 244443321 11223455555555
Q ss_pred HHhc-CCceEEEeCCC
Q 042336 274 LSIT-GKKFLLVLDDV 288 (944)
Q Consensus 274 ~~l~-~k~~LlVlDdv 288 (944)
...+ +..-+||+|.+
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 4443 45679999988
No 260
>PRK06696 uridine kinase; Validated
Probab=95.91 E-value=0.0082 Score=61.23 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=34.7
Q ss_pred cchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 177 GRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|.+-+++|.+.+.... .+...+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35667788888876532 24678999999999999999999987
No 261
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.87 E-value=0.041 Score=57.51 Aligned_cols=134 Identities=24% Similarity=0.304 Sum_probs=74.1
Q ss_pred cccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcc-ccccCceeE----EEEeCCCC-----CH
Q 042336 175 VRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDND-VINNFEKRI----WVSVSDPF-----DE 244 (944)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~----wv~vs~~~-----~~ 244 (944)
+-+|..+..--+++|+.+ ....|.+.|.+|.|||.||-+..-..- .+..|..++ -+.+.++. ..
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 345777877788888643 578999999999999999965533211 233343322 12233321 11
Q ss_pred HH----HHHHHHH---HhhC-CCCCCCCHHHHHHHHH---------HHhcCCc---eEEEeCCCCccCccChhhhHhhhc
Q 042336 245 YR----VAKAIIE---ALEG-SAPNLGELNSLLQHIC---------LSITGKK---FLLVLDDVWTEDYSKWEPFHNCLM 304 (944)
Q Consensus 245 ~~----~~~~i~~---~l~~-~~~~~~~~~~~~~~l~---------~~l~~k~---~LlVlDdvw~~~~~~~~~l~~~l~ 304 (944)
++ -++.|.. .+.. ..+. .+.+...+. .+.+|+. -+||+|...+- .-.+++..+.
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---TpheikTilt 373 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---TPHELKTILT 373 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---CHHHHHHHHH
Confidence 11 1122222 1211 1122 111222111 1335543 48999999653 3456777777
Q ss_pred cCCCCcEEEEEccchh
Q 042336 305 NCLHGSKILVTTRKET 320 (944)
Q Consensus 305 ~~~~gs~iivTtr~~~ 320 (944)
..+.||||+.|--..+
T Consensus 374 R~G~GsKIVl~gd~aQ 389 (436)
T COG1875 374 RAGEGSKIVLTGDPAQ 389 (436)
T ss_pred hccCCCEEEEcCCHHH
Confidence 8889999999976443
No 262
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.85 E-value=0.016 Score=57.68 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=52.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH-h---
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLS-I--- 276 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l--- 276 (944)
++..|.|.+|.||||+++.+... .... ...+.+......-... +.+..+.. ...+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCccccccc
Confidence 57888999999999999988763 2222 2333333333222222 22222211 11111110000000 0
Q ss_pred --cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch
Q 042336 277 --TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 277 --~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 319 (944)
..++-+||+|+++-.+...+..+....+. .|+++|+.--..
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 23345999999966555555555555544 477888776443
No 263
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.037 Score=53.75 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=59.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC--CCCHHHHHHHHHHHhhC--CCCCC---------CCHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD--PFDEYRVAKAIIEALEG--SAPNL---------GELN 266 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~~---------~~~~ 266 (944)
-.+++|+|..|.|||||.+.++.-.. .....+++.-.. ....... ...+.- +.+.. .+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 35899999999999999999987321 122223221100 0011111 011110 00000 1111
Q ss_pred H-HHHHHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccchhhhhc
Q 042336 267 S-LLQHICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRKETVARM 324 (944)
Q Consensus 267 ~-~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 324 (944)
+ ..-.+.+.+-.++-+++||+-... |......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1 222345566778889999987432 333344455555433335668888877665543
No 264
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.84 E-value=0.03 Score=59.77 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=41.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCcccc----ccCceeEEEEeCCCCCHHHHHHHHHHHhhC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVI----NNFEKRIWVSVSDPFDEYRVAKAIIEALEG 257 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 257 (944)
.-+++-|+|.+|+|||+|+.+++-..... ..=..++||+....|+++++.+ ++++++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45789999999999999998765321111 1124689999999999888754 5666654
No 265
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.82 E-value=0.018 Score=59.38 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=51.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccC-ceeEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCCCCHH-----
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNF-EKRIWVSVSDPF-DEYRVAKAIIEALEGS-------APNLGELN----- 266 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 266 (944)
+.++|.|.+|+|||||++.+++ .++.+| +.++++-+.+.. .+.++.+.+.+.=... ..+..-..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999998 455455 455667776654 3455555554321110 11111111
Q ss_pred HHHHHHHHHh---cCCceEEEeCCC
Q 042336 267 SLLQHICLSI---TGKKFLLVLDDV 288 (944)
Q Consensus 267 ~~~~~l~~~l---~~k~~LlVlDdv 288 (944)
...-.+.+++ +++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1112233344 389999999999
No 266
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.82 E-value=0.13 Score=62.45 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=91.6
Q ss_pred CccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.++.|.+..++.+.+.+.-+-.. +-..++-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 34678888888777765421100 1123455789999999999999999984 22233 222211
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHH-HHhcCCceEEEeCCCCcc------Cc-cC-----hhhhHhhhcc--CCCCc
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHIC-LSITGKKFLLVLDDVWTE------DY-SK-----WEPFHNCLMN--CLHGS 310 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~------~~-~~-----~~~l~~~l~~--~~~gs 310 (944)
++ +... . .+.+...+.+. ..-...+.+|++|++..- .. .. ...+...+.. ...+.
T Consensus 522 ~l----~~~~----v--Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 EI----LSKW----V--GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HH----hhcc----c--CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 1111 0 11122222232 233466799999998321 00 01 1112222221 12344
Q ss_pred EEEEEccchhhhhc-c----cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh
Q 042336 311 KILVTTRKETVARM-M----ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 311 ~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 376 (944)
.||.||...+.... + .-...+.+...+.++-.++|+.+...... ...-+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHcCCCC
Confidence 56667755443221 1 12457788888888888888765432211 11112 244666777643
No 267
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.80 E-value=0.058 Score=54.75 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=71.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-----CCCHHHHHHHHHHHhhCC------CCCCCCHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-----PFDEYRVAKAIIEALEGS------APNLGELNSL 268 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~------~~~~~~~~~~ 268 (944)
-.+++|+|..|.||||+++.+..= ...-...+++.-.+ .....+-..++++.++.. .+...+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 368999999999999999999872 22223333333211 222334455556665533 1223333344
Q ss_pred HH-HHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccC--CCCcEEEEEccchhhhhcccc
Q 042336 269 LQ-HICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNC--LHGSKILVTTRKETVARMMES 327 (944)
Q Consensus 269 ~~-~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~~ 327 (944)
++ .+.+.|.-++-++|.|..-+. +...-.++...+.+- ..|-..+..|-+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 43 456778889999999986322 111223333333322 245567777777777766543
No 268
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.78 E-value=0.088 Score=60.15 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=41.4
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS 237 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 237 (944)
+++--..-++++..||..... +....+++.+.|++|+||||.++.+++. -.|+.+=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 344445667778888865332 2234579999999999999999999884 2455666754
No 269
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.70 E-value=0.0066 Score=68.11 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=39.6
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+++|.++.+++|++.|......-...-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999998432221223457999999999999999999987
No 270
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.70 E-value=0.0052 Score=61.27 Aligned_cols=84 Identities=21% Similarity=0.155 Sum_probs=42.7
Q ss_pred hhcccccceeccCcc--ccc-ccCccccCCCcccEEEecCccCCcccCcc---cccCCCCceeecccccccccc----cc
Q 042336 605 IQKLIHLRYFKLHWL--EIK-ELPDTCCELFNLQTIEIEGCYNLNRLPQG---VGKLVNLRHLIFDVNFVEYMP----KG 674 (944)
Q Consensus 605 i~~l~~Lr~L~Ls~~--~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~~~~~~lp----~~ 674 (944)
+..|++|++|.+|.| .+. .++-...++++|++|++++|+ +.. +.. +.++.+|..|++..+....+- ..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 344556666666666 322 444444455666666666665 332 122 344555556665443322221 11
Q ss_pred ccCCCCCCcCCceEec
Q 042336 675 IERLTCLRTLSEFVVV 690 (944)
Q Consensus 675 i~~l~~L~~L~~~~~~ 690 (944)
+.-+++|..|+.+.+.
T Consensus 139 f~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHhhhhccccccccC
Confidence 3446677777755544
No 271
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.69 E-value=0.049 Score=58.60 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=42.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccc----cccCceeEEEEeCCCCCHHHHHHHHHHHhhC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDV----INNFEKRIWVSVSDPFDEYRVAKAIIEALEG 257 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 257 (944)
.-++.-|+|.+|+|||+|+.+++-.... .+.-..++|++....|+++++.+ ++++++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4578889999999999999887532121 11124789999999999988755 5666654
No 272
>PRK09354 recA recombinase A; Provisional
Probab=95.69 E-value=0.028 Score=60.13 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=54.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCCCCHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSA-----PNLGELNSLLQHIC 273 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 273 (944)
.-+++-|+|++|+||||||.+++.. ....-..++||+..+.+++. .+++++... ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999888763 23334678899988877763 344444321 11223455555555
Q ss_pred HHhc-CCceEEEeCCC
Q 042336 274 LSIT-GKKFLLVLDDV 288 (944)
Q Consensus 274 ~~l~-~k~~LlVlDdv 288 (944)
..++ +..-+||+|.|
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 5443 45669999998
No 273
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.66 E-value=0.059 Score=61.12 Aligned_cols=159 Identities=19% Similarity=0.156 Sum_probs=80.7
Q ss_pred CccccchhHHHHHHHHhcc---C-CcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLC---E-NSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 248 (944)
.++.|.+..++.+.+.... . ...+-..++-|.++|++|+|||.+|+.+.+.. ...| +-+.++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH--------
Confidence 3567877666666543211 0 00011245678899999999999999998842 2222 1122111
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCcc--------CccCh----hhhHhhhccCCCCcEEEEEc
Q 042336 249 KAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTE--------DYSKW----EPFHNCLMNCLHGSKILVTT 316 (944)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~--------~~~~~----~~l~~~l~~~~~gs~iivTt 316 (944)
+.....+. ....+...+...-...+++|++|++... +...- ..+...+.....+.-||.||
T Consensus 295 ------l~~~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 ------LFGGIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ------hcccccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 11110000 1111222222222457899999998421 00001 11222233333444566677
Q ss_pred cchhh-hhcc----cccceEeCCCCChHHHHHHHHHHhcC
Q 042336 317 RKETV-ARMM----ESIDILIIKELSELECWSLFKRFAFF 351 (944)
Q Consensus 317 r~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~ 351 (944)
..... ...+ .-+..+.++.-+.++-.++|..+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 54432 1111 22457788888889999999877643
No 274
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0043 Score=36.68 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=8.1
Q ss_pred cceeccCcccccccCccc
Q 042336 611 LRYFKLHWLEIKELPDTC 628 (944)
Q Consensus 611 Lr~L~Ls~~~i~~lP~~i 628 (944)
|++|+|++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 275
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.65 E-value=0.019 Score=57.18 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=56.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH-HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY-RVAKAIIEALEGSAPNLGELNSLLQHICLSITGK 279 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 279 (944)
.++.|+|..|+||||++..+... ........++. +.++.... .-...++.+-. . ..+.......++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~---v-g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQRE---V-GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeecc---c-CCCccCHHHHHHHHhcCC
Confidence 47899999999999999987763 22233333333 22211100 00001111100 0 111123444566667767
Q ss_pred ceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhh
Q 042336 280 KFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVA 322 (944)
Q Consensus 280 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 322 (944)
+=++++|++.+ .+.+..+ +.....|..++.|+-..++.
T Consensus 75 pd~ii~gEird--~e~~~~~---l~~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRD--LETIRLA---LTAAETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCC--HHHHHHH---HHHHHcCCEEEEEecCCcHH
Confidence 77999999943 2233332 22233466677777655443
No 276
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.65 E-value=0.061 Score=55.40 Aligned_cols=86 Identities=20% Similarity=0.182 Sum_probs=53.5
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCC-------------------
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSA------------------- 259 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------- 259 (944)
.-.++.|+|.+|+|||+||.++... ..+ +=..++|++..+. ++++.+.+ ++++-..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 4578999999999999999998542 122 2357788888653 45555543 3332110
Q ss_pred -CCCCCHHHHHHHHHHHhcC-CceEEEeCCCC
Q 042336 260 -PNLGELNSLLQHICLSITG-KKFLLVLDDVW 289 (944)
Q Consensus 260 -~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw 289 (944)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234556666665543 56689999873
No 277
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.63 E-value=0.27 Score=52.18 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=38.5
Q ss_pred cccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHH
Q 042336 175 VRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 248 (944)
++=..+....+...+... +-|.|.|.+|+||||+|+.++.. .... .+.|.++...+..+++
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDLV 107 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhcC
Confidence 333334455566666422 35889999999999999999883 3222 2355666655554443
No 278
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.61 E-value=0.089 Score=50.76 Aligned_cols=116 Identities=11% Similarity=0.082 Sum_probs=60.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccc-ccc--Cc---eeEEEEeCCCCCH--HHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDV-INN--FE---KRIWVSVSDPFDE--YRVAKAIIEALEGSAPNLGELNSLLQHI 272 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l 272 (944)
.+++|+|..|.|||||++.+..-... .+. ++ .+.+ +.+.... ..+...+... .....+.-+...-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 58999999999999999999874221 111 11 1222 2332211 1222222110 111222223333345
Q ss_pred HHHhcCCceEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccchhhhh
Q 042336 273 CLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRKETVAR 323 (944)
Q Consensus 273 ~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 323 (944)
.+.+-.++=++++|+--.. |......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 5666778888999976321 223344454555443 345777776665543
No 279
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.60 E-value=0.039 Score=58.28 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=46.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC-CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP-FDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
..+++.|+|..|+||||++..+......+..-..+..|+.... ....+.+....+.++.......+...+...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 4579999999999999999988763222211124555655431 122233333333333332222333444444433 33
Q ss_pred CCceEEEeCCC
Q 042336 278 GKKFLLVLDDV 288 (944)
Q Consensus 278 ~k~~LlVlDdv 288 (944)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777753
No 280
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.59 E-value=0.085 Score=49.48 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=56.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
.+++|+|..|.|||||++.+..-.. .....+|+.-.. .+.-- +..+.-+...-.+.+.+-.++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999987421 122333331100 00000 001111222334556667788
Q ss_pred eEEEeCCCCc-cCccChhhhHhhhccCCCCcEEEEEccchhhh
Q 042336 281 FLLVLDDVWT-EDYSKWEPFHNCLMNCLHGSKILVTTRKETVA 322 (944)
Q Consensus 281 ~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 322 (944)
-++++|+.-. -|......+...+... +..||++|.+.+..
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 8999998732 2334445555555543 23577777665544
No 281
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.56 E-value=0.05 Score=58.32 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=40.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccc---cc-cCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDV---IN-NFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
...++.|+|.+|+|||||+..++..... .+ .-..++|++..+.++.+++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 4679999999999999999888642111 11 1235789998888888764 44555554
No 282
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.13 Score=52.99 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=46.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCcccc--ccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVI--NNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
-++|.++|++|.|||+|.+++++.-.++ +.|....-+.++.+ .++.+...+- ..-+..+.+++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsES------gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSES------GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhhh------hhHHHHHHHHHHHHHh
Confidence 3789999999999999999999965443 45555555554432 2222222111 1123344555555555
Q ss_pred CCc--eEEEeCCC
Q 042336 278 GKK--FLLVLDDV 288 (944)
Q Consensus 278 ~k~--~LlVlDdv 288 (944)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 444 45567887
No 283
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.55 E-value=0.06 Score=52.27 Aligned_cols=102 Identities=17% Similarity=0.086 Sum_probs=54.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE------eCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS------VSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL 274 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 274 (944)
.+++|+|..|.|||||++.+..-.. .....+++. +.+... .+.-+...-.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 5899999999999999999986321 112222221 111111 1111222334555
Q ss_pred HhcCCceEEEeCCCCcc-CccChhhhHhhhccC--CCCcEEEEEccchhhhh
Q 042336 275 SITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNC--LHGSKILVTTRKETVAR 323 (944)
Q Consensus 275 ~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~ 323 (944)
.+-.++-++++|+--.. +......+...+... ..+.-||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 66778889999987321 223333344444332 12245666666554433
No 284
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.55 E-value=0.12 Score=51.89 Aligned_cols=228 Identities=12% Similarity=0.120 Sum_probs=121.7
Q ss_pred cccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC----ccccccCceeEEEEeCCC---------
Q 042336 175 VRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND----NDVINNFEKRIWVSVSDP--------- 241 (944)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~----~~~~~~F~~~~wv~vs~~--------- 241 (944)
+.++++....+...... +...-+.++|+.|.||-|.+..+.++ --.+-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56677777777776642 34567889999999999887666553 111223345555543332
Q ss_pred -C-----------CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCce-EEEeCCCCccCccChhhhHhhhccCCC
Q 042336 242 -F-----------DEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKF-LLVLDDVWTEDYSKWEPFHNCLMNCLH 308 (944)
Q Consensus 242 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~~ 308 (944)
. .-+-+.++++.+.....+-.. -..+.| ++|+-.+.+-..+.-..++.....-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 112344444444433221100 012334 555655533222333445555555556
Q ss_pred CcEEEEEccch--hhhhcccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhh
Q 042336 309 GSKILVTTRKE--TVARMMESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLL 386 (944)
Q Consensus 309 gs~iivTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l 386 (944)
.+|+|+...+. -+...-...-.+++...+++|....+.+..-..+-.-. .+++.+|+++++|+-.-...+--.+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp----~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP----KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc----HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 77887764432 12221122346788999999999999887654433212 7889999999999753333322222
Q ss_pred cCCC----------CHHHHHHHHhhhhhhhhh--hccchhhHHHhhhhcC
Q 042336 387 RFKR----------TTEEWQNILDSEMWQLEE--FEKDLLAPLLLSYTDL 424 (944)
Q Consensus 387 ~~~~----------~~~~w~~~~~~~~~~~~~--~~~~i~~~l~~sy~~L 424 (944)
+.+. ..-+|+-...+....... ..+.+..+-..-|+-|
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2211 235788777654433322 1234444444445444
No 285
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.043 Score=64.40 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=85.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc---cccccC-ceeEEEEeCCCCCHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN---DVINNF-EKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~ 248 (944)
..++||++|++++++.|..... .+ -.++|.+|+|||++|.-++..- .|-... +..++.-
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---NN---PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL----------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---NN---PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL----------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---CC---CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe-----------
Confidence 4589999999999999986543 12 2468999999999987666520 111111 1111110
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHh-cCCceEEEeCCCCcc---------CccChhhhHhhhccCCCCcEEEEEccc
Q 042336 249 KAIIEALEGSAPNLGELNSLLQHICLSI-TGKKFLLVLDDVWTE---------DYSKWEPFHNCLMNCLHGSKILVTTRK 318 (944)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~ 318 (944)
++.. +.....-..+.++..+.+.+.+ +.++.+|++|.+..- ..+.-+-++++|..+. --.|=-||-+
T Consensus 233 -D~g~-LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~ 309 (786)
T COG0542 233 -DLGS-LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLD 309 (786)
T ss_pred -cHHH-HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHH
Confidence 0111 1111112233444444444433 345899999988431 1223333555555432 2235555544
Q ss_pred hhhhhcc-------cccceEeCCCCChHHHHHHHHHH
Q 042336 319 ETVARMM-------ESIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 319 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
+ .-... ...+.+.+..-+.+++..+++-.
T Consensus 310 E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 310 E-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred H-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 3 22211 22467888889999999888654
No 286
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.52 E-value=0.073 Score=51.32 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=41.9
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNL---GELNSLLQHICLSITG 278 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~ 278 (944)
++.|.|.+|+||||+|..+..... ...+++.-...++ .+..+.|..........- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 588999999999999999876311 1233443333333 344444444333221111 1111233334333332
Q ss_pred CceEEEeCCC
Q 042336 279 KKFLLVLDDV 288 (944)
Q Consensus 279 k~~LlVlDdv 288 (944)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337899987
No 287
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.47 E-value=0.11 Score=57.89 Aligned_cols=88 Identities=18% Similarity=0.091 Sum_probs=48.4
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCCCCC---CCCHHHHHHHHH
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGSAPN---LGELNSLLQHIC 273 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 273 (944)
..+.++.++|.+|+||||+|.+++.. ....-..++-|++.. .....+.++.+.++++.+... ..+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999999873 222212344454432 122344455566665543211 122223233333
Q ss_pred HHhcCCceEEEeCCC
Q 042336 274 LSITGKKFLLVLDDV 288 (944)
Q Consensus 274 ~~l~~k~~LlVlDdv 288 (944)
+.+.+. =+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 56788876
No 288
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.067 Score=63.79 Aligned_cols=122 Identities=17% Similarity=0.241 Sum_probs=74.3
Q ss_pred ccccchhHHHHHHHHhccCCcccC--CceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQ--NAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
.++|.++.+..|.+.+......-. .....+.+.|+.|+|||-||+++.. .+-+..+..+-++.|+ ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh--
Confidence 467888888888888765432111 2566788999999999999999987 3433444455554443 222
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhcCCce-EEEeCCCCccCccChhhhHhhhccC
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSITGKKF-LLVLDDVWTEDYSKWEPFHNCLMNC 306 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 306 (944)
..++.+..+.-.. .+....+-+.++.++| +|+||||...++.....+...+..+
T Consensus 633 vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 3333333222111 1122345556677776 6778999766665555566666654
No 289
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.46 E-value=0.009 Score=57.65 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=30.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCcccc-ccCceeEEEEeCCCCC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVI-NNFEKRIWVSVSDPFD 243 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~ 243 (944)
..++.+.|+.|+|||.||+.+.+ .+. +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 46788999999999999999988 343 4445666666665333
No 290
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.46 E-value=0.069 Score=57.60 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=41.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccc---cc-cCceeEEEEeCCCCCHHHHHHHHHHHhhC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDV---IN-NFEKRIWVSVSDPFDEYRVAKAIIEALEG 257 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 257 (944)
.-.++-|+|.+|+|||+|+..++-.... .+ .-..++|++....|+++++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 4578899999999999999877642111 11 11368999999999988864 55666653
No 291
>PHA02244 ATPase-like protein
Probab=95.44 E-value=0.064 Score=57.47 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-|.|+|.+|+|||+||++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999873
No 292
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.41 E-value=0.022 Score=60.42 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=23.8
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+..++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999994
No 293
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.014 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
--|+|.|++|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 45889999999999999999873
No 294
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.32 E-value=0.02 Score=54.74 Aligned_cols=81 Identities=25% Similarity=0.278 Sum_probs=43.7
Q ss_pred hhcCCcccEEEeccCCCcccccccchhhhc-ccccceeccCcccccccCc--cccCCCcccEEEecCccCCcccC----c
Q 042336 578 FNQFTCLRALKITRNSKENSIYEIPKEIQK-LIHLRYFKLHWLEIKELPD--TCCELFNLQTIEIEGCYNLNRLP----Q 650 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~-l~~Lr~L~Ls~~~i~~lP~--~i~~L~~L~~L~L~~~~~l~~lp----~ 650 (944)
|..++.|.+|.|.+|. +..+-..+.. +++|..|.|.+|.|.++.+ .+..++.|++|.+-+|. +..-+ -
T Consensus 60 lp~l~rL~tLll~nNr----It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~y 134 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR----ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLY 134 (233)
T ss_pred CCCccccceEEecCCc----ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeE
Confidence 5555666666666666 5555444443 3446666666666554432 24455666666666554 22221 1
Q ss_pred ccccCCCCceeec
Q 042336 651 GVGKLVNLRHLIF 663 (944)
Q Consensus 651 ~i~~L~~L~~L~l 663 (944)
.+.++++|+.||.
T Consensus 135 vl~klp~l~~LDF 147 (233)
T KOG1644|consen 135 VLYKLPSLRTLDF 147 (233)
T ss_pred EEEecCcceEeeh
Confidence 2455666666665
No 295
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.30 E-value=0.042 Score=52.87 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=60.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC--CCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD--PFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
.+++|+|..|.|||||.+.+..-. ......+++.-.. ..+..+..+ +.++- ....+.-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHhc
Confidence 589999999999999999998631 2233444442111 111111110 01110 00112222233345566677
Q ss_pred CceEEEeCCCCcc-CccChhhhHhhhccC-CCCcEEEEEccchhh
Q 042336 279 KKFLLVLDDVWTE-DYSKWEPFHNCLMNC-LHGSKILVTTRKETV 321 (944)
Q Consensus 279 k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v 321 (944)
++-++++|+.-.. |......+...+... ..|.-||++|.+...
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 8889999987321 333444555555432 236667788777653
No 296
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.30 E-value=0.036 Score=60.00 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=70.4
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIE 253 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 253 (944)
.++|+...++++.+.+..-.. ...-|.|+|..|+||+++|+.++...... -..-+.|++..-. ...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCCC-HHHHHHHHcc
Confidence 588999888888887765432 23457899999999999999998631111 1123445555422 2222222211
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEccc
Q 042336 254 ALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTTRK 318 (944)
Q Consensus 254 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 318 (944)
.-.+....... .....+. ....=.|+||||..-.......+...+..+. ...|||.||..
T Consensus 80 ~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 10000000000 0011111 1222357899996655555566666665432 13588888754
No 297
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.032 Score=54.97 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=44.0
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHH--hhCCCCCCCCHHHHHHHHHHH
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEA--LEGSAPNLGELNSLLQHICLS 275 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~~ 275 (944)
..+.+|+|.|.+|+||||+|+.++. ..+..+ ++-++-..-+. ..-.....+. ..-..+...+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4578999999999999999999988 333231 11111111010 0000001111 112234556777778888888
Q ss_pred hcCCc
Q 042336 276 ITGKK 280 (944)
Q Consensus 276 l~~k~ 280 (944)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 78877
No 298
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.05 Score=59.03 Aligned_cols=88 Identities=14% Similarity=0.142 Sum_probs=49.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
..++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.......+...+...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 46899999999999999999987321111123455555432 223445555555555543322222222333333 3345
Q ss_pred CceEEEeCCCC
Q 042336 279 KKFLLVLDDVW 289 (944)
Q Consensus 279 k~~LlVlDdvw 289 (944)
+ -+|++|..-
T Consensus 216 ~-DlVLIDTaG 225 (374)
T PRK14722 216 K-HMVLIDTIG 225 (374)
T ss_pred C-CEEEEcCCC
Confidence 4 556689884
No 299
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.044 Score=60.99 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=59.1
Q ss_pred CccccchhHHHHHHHHhccCCcc------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.++-|.+....++.+++..-... +-..++=|.+||++|.|||.||++++++.. -.| +.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--Cce-----Eeecch-----
Confidence 45778998888887776542110 123456688999999999999999999533 233 333321
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCC
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVW 289 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 289 (944)
+|+....+ .+.+.+...+.+.-...++++++|++.
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 12222221 112233333344556789999999984
No 300
>PRK05439 pantothenate kinase; Provisional
Probab=95.23 E-value=0.087 Score=55.74 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=44.4
Q ss_pred CCceEEEEEEeeCCchHHHHHHHHhcCcccccc--CceeEEEEeCCCCCHHHHHHHHHHHhh-CCCCCCCCHHHHHHHHH
Q 042336 197 QNAVQVISMVGMGGIGKTTLAQFVYNDNDVINN--FEKRIWVSVSDPFDEYRVAKAIIEALE-GSAPNLGELNSLLQHIC 273 (944)
Q Consensus 197 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~ 273 (944)
...+-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+...+.+..- ..+. ...++.-+.+.+...+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 34678999999999999999998876 22221 1233444444433232222210 0111 12344556666666666
Q ss_pred HHhcCCc
Q 042336 274 LSITGKK 280 (944)
Q Consensus 274 ~~l~~k~ 280 (944)
....|+.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 5555554
No 301
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.23 E-value=0.096 Score=51.01 Aligned_cols=21 Identities=48% Similarity=0.613 Sum_probs=19.2
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999887
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=95.22 E-value=0.11 Score=55.93 Aligned_cols=113 Identities=18% Similarity=0.113 Sum_probs=55.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC--CHHHHHHHHHHHhhCCCC---CCCCHHHH-HHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF--DEYRVAKAIIEALEGSAP---NLGELNSL-LQHI 272 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l 272 (944)
++.++.++|++|+||||++.+++.... ...+ .++.+.. +.+ ...+-++...+.++.... ...+.... ...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888876321 1223 3334432 222 223344555566553321 11222222 2222
Q ss_pred HHHhcCCceEEEeCCCCcc--CccChhhhHhhhccCCCCcEEEE
Q 042336 273 CLSITGKKFLLVLDDVWTE--DYSKWEPFHNCLMNCLHGSKILV 314 (944)
Q Consensus 273 ~~~l~~k~~LlVlDdvw~~--~~~~~~~l~~~l~~~~~gs~iiv 314 (944)
........=+|++|..-.. +...++.+........+.-.++|
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLV 259 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFV 259 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEe
Confidence 2221222238888987432 22334445444333333333444
No 303
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.22 E-value=0.075 Score=51.75 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=58.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC--CCCHHHHHHHHHHHhhC--CCCCC---------CCHH-
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD--PFDEYRVAKAIIEALEG--SAPNL---------GELN- 266 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~~---------~~~~- 266 (944)
.+++|+|..|.|||||.+.+..-.. .....+++.-.. ........ ..+.- +.+.. .+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHHH
Confidence 5899999999999999999986311 122222221100 01111111 11110 00000 1111
Q ss_pred HHHHHHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccC-CCCcEEEEEccchhhhh
Q 042336 267 SLLQHICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNC-LHGSKILVTTRKETVAR 323 (944)
Q Consensus 267 ~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 323 (944)
...-.+.+.+-.++-+++||+.... |......+...+... ..|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2222345566677789999987432 233334444444432 23666888887766554
No 304
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.20 E-value=0.11 Score=49.51 Aligned_cols=115 Identities=19% Similarity=0.129 Sum_probs=62.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeE---EEEeCCCCCHHHHHHHHHHHhh-----CC----CCCCC-C---
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRI---WVSVSDPFDEYRVAKAIIEALE-----GS----APNLG-E--- 264 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~---wv~vs~~~~~~~~~~~i~~~l~-----~~----~~~~~-~--- 264 (944)
..|-|++-.|.||||.|..+.- +..++=-.++ |+.-........++... .+. .. ..+.. +
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 5778888899999999976654 2222222232 22222223444444432 111 10 00100 1
Q ss_pred HHHHHHHHHHHhcCCc-eEEEeCCCCc---cCccChhhhHhhhccCCCCcEEEEEccch
Q 042336 265 LNSLLQHICLSITGKK-FLLVLDDVWT---EDYSKWEPFHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 265 ~~~~~~~l~~~l~~k~-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 319 (944)
........++.+.... =|||||.+-. ...-+.+++...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1122333344444444 4999998821 12345567777787777788999999976
No 305
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.15 E-value=0.17 Score=53.55 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=37.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
-.++.|.|.+|+||||++.++.... ...+=..++|++... +..++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 3578899999999999999887632 122234678887765 45666666665543
No 306
>PTZ00494 tuzin-like protein; Provisional
Probab=95.12 E-value=0.45 Score=51.55 Aligned_cols=169 Identities=14% Similarity=0.170 Sum_probs=105.9
Q ss_pred ccccCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHH
Q 042336 168 ALINVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRV 247 (944)
Q Consensus 168 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 247 (944)
.......+|.|++|-..+.+.|.+.+. ..++++.+.|.-|.||++|.+.....+.+ ..++|.|... ++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cch
Confidence 334566799999998888888876543 57899999999999999999988874433 4567777653 456
Q ss_pred HHHHHHHhhCCCCCC-CC-HHHHHHHH---HHHhcCCceEEEeCCCCccC-ccChhhhHhhhccCCCCcEEEEEccchhh
Q 042336 248 AKAIIEALEGSAPNL-GE-LNSLLQHI---CLSITGKKFLLVLDDVWTED-YSKWEPFHNCLMNCLHGSKILVTTRKETV 321 (944)
Q Consensus 248 ~~~i~~~l~~~~~~~-~~-~~~~~~~l---~~~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v 321 (944)
++.+++.++.+..+. .| ++-+.+.. .....++.-+||+-==...+ ...+.+. ..|.....-+.|++---.+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhh
Confidence 788888888764332 11 22222222 22345666677764211110 0111221 124444456778776555544
Q ss_pred hhccc---ccceEeCCCCChHHHHHHHHHH
Q 042336 322 ARMME---SIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 322 ~~~~~---~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
..... .-..|.+++++.++|.++-.+.
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 33221 2457899999999999887765
No 307
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.12 E-value=0.13 Score=53.04 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=35.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
.-.++.|.|.+|+|||++|.++... .. ..-..++||+... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 4578999999999999999876542 12 2346788888765 555555553
No 308
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.11 E-value=0.073 Score=54.53 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=23.0
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+...+++|.|..|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999887
No 309
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.11 E-value=0.059 Score=53.61 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=42.3
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccc-cCc---eeEEEEeCCCCCHHHHHHHHHHHhh----CCCCCCCCHHHHHHHHH
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVIN-NFE---KRIWVSVSDPFDEYRVAKAIIEALE----GSAPNLGELNSLLQHIC 273 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~l~ 273 (944)
||+|.|.+|+||||+|+.+... ... ... ....++...-...... ...-.... ...+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHL-RDRKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHH-HHHHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccch-hhHhhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999873 221 222 1233332222222221 11111111 12234566777777776
Q ss_pred HHhcCCceEE
Q 042336 274 LSITGKKFLL 283 (944)
Q Consensus 274 ~~l~~k~~Ll 283 (944)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 6656665433
No 310
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.08 E-value=0.051 Score=58.79 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=33.6
Q ss_pred cccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 175 VRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
++|....++++.+.+..-.. ...-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777776654432 2345789999999999999999863
No 311
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.07 E-value=0.022 Score=54.42 Aligned_cols=99 Identities=20% Similarity=0.173 Sum_probs=70.8
Q ss_pred EEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc--hhhhcccccce
Q 042336 536 SMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP--KEIQKLIHLRY 613 (944)
Q Consensus 536 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp--~~i~~l~~Lr~ 613 (944)
+.+..+++. ....+..+++|.+|.+.++.+.. +-+.+-.-+++|.+|.|.+|+ +.++- ..+..|+.|+|
T Consensus 47 iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~----I~p~L~~~~p~l~~L~LtnNs----i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 47 IDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITR----IDPDLDTFLPNLKTLILTNNS----IQELGDLDPLASCPKLEY 117 (233)
T ss_pred ecccccchh-hcccCCCccccceEEecCCccee----eccchhhhccccceEEecCcc----hhhhhhcchhccCCccce
Confidence 334444443 24567789999999999987532 223333556789999999998 55443 34677999999
Q ss_pred eccCcccccccCc----cccCCCcccEEEecCcc
Q 042336 614 FKLHWLEIKELPD----TCCELFNLQTIEIEGCY 643 (944)
Q Consensus 614 L~Ls~~~i~~lP~----~i~~L~~L~~L~L~~~~ 643 (944)
|.+-+|.+...+. -++.+++|++||..+-.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9999998775443 37899999999997743
No 312
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.07 E-value=0.2 Score=50.10 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCceEEEeCCCCc-cCccChhhhHhhhccC--CCCcEEEEEccchhhhhccc
Q 042336 266 NSLLQHICLSITGKKFLLVLDDVWT-EDYSKWEPFHNCLMNC--LHGSKILVTTRKETVARMME 326 (944)
Q Consensus 266 ~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~ 326 (944)
++..-.+.+.|-..+-+|+-|+--. -|...-..+...+... ..|.-||+.|.+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3334466778888899999996421 1223344455555543 34778999999999988643
No 313
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.06 E-value=0.063 Score=64.77 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=73.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH-H
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA-I 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~-i 251 (944)
..++|+...++.+.+.+..-.. ...-|.|+|..|+|||++|+.+++.... .-...+.+++..-. ...+.. +
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~--~~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP--AGLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC--hhHhhhhh
Confidence 3689999888888776654322 2346889999999999999999874221 11233445555422 122222 1
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEccc
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTTRK 318 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 318 (944)
.....+...... ......+. ....=.|+||||..-.......+...+..+. .+.|||.||..
T Consensus 448 fg~~~~~~~g~~--~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 448 FGHERGAFTGAS--AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred cCcccccccccc--cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 111111111100 01111221 1223469999997655555566666664431 24588888864
No 314
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.087 Score=59.20 Aligned_cols=89 Identities=18% Similarity=0.107 Sum_probs=45.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
...+++|+|.+|+||||++.++......+.....+..++... .....+.++...+.++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 357999999999999999988876311111123344554432 1112222332223332222222233334444433 33
Q ss_pred CCceEEEeCCCC
Q 042336 278 GKKFLLVLDDVW 289 (944)
Q Consensus 278 ~k~~LlVlDdvw 289 (944)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588888874
No 315
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.06 E-value=0.14 Score=57.39 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=52.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF-DEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
.+++.++|++|+||||++.++.........-..++.|+....- ...+-++...+.++.......+.+.+...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 4689999999999999998876532201222456666654321 11222333333333322222333444444443 23
Q ss_pred CceEEEeCCCCcc--CccChhhhHhhhc
Q 042336 279 KKFLLVLDDVWTE--DYSKWEPFHNCLM 304 (944)
Q Consensus 279 k~~LlVlDdvw~~--~~~~~~~l~~~l~ 304 (944)
..=+||+|..-.. +....+.+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 3467888976322 2222334545444
No 316
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.05 E-value=0.11 Score=53.03 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=31.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
-.++.|.|.+|+||||+|.++... ..+.. ..+++++.. -+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 458999999999999998665542 11222 345666633 3556666665
No 317
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.083 Score=57.80 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.5
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...++.++|.+|+||||++.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 318
>PRK13948 shikimate kinase; Provisional
Probab=95.05 E-value=0.1 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.7
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457789999999999999999987
No 319
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.04 E-value=0.071 Score=53.98 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 320
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.04 E-value=0.047 Score=55.01 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999998874
No 321
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.26 Score=48.60 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=71.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCcccc-------------------ccCceeEEEEeCCCC-----CHHHHHHHH----
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVI-------------------NNFEKRIWVSVSDPF-----DEYRVAKAI---- 251 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~-----~~~~~~~~i---- 251 (944)
-.+-+|-|+.|.||||||..+.-++.++ .+...-+++....+. ....+++..
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~ 109 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNAR 109 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhh
Confidence 3578999999999999999997765321 122222333332222 222333322
Q ss_pred -----------------HHHhhCCC--------CCCCCHHHHHHHHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhcc
Q 042336 252 -----------------IEALEGSA--------PNLGELNSLLQHICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMN 305 (944)
Q Consensus 252 -----------------~~~l~~~~--------~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~ 305 (944)
++.++.+. ...+.-+.....+.+.+-=++-+.|||...+- |.+....+...+..
T Consensus 110 ~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~ 189 (251)
T COG0396 110 RGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA 189 (251)
T ss_pred hccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHH
Confidence 22222211 01122233444555666667789999987432 22333333333332
Q ss_pred C-CCCcEEEEEccchhhhhcccccceEe
Q 042336 306 C-LHGSKILVTTRKETVARMMESIDILI 332 (944)
Q Consensus 306 ~-~~gs~iivTtr~~~v~~~~~~~~~~~ 332 (944)
. .+|+-+++.|..+.+++....+.++.
T Consensus 190 lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 190 LREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 1 24666777777788888766554443
No 322
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.01 E-value=0.32 Score=53.86 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.9
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+.+|.++|..|+||||++.+++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988865
No 323
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.12 Score=50.26 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=60.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhC--CCC---CC--------CCHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEG--SAP---NL--------GELN 266 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--~~~---~~--------~~~~ 266 (944)
-.+++|+|..|.|||||++.+..... .....+++.-..-.+.. ..+...+.- +.+ .. .+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999987321 12233332110000000 000011100 000 00 1112
Q ss_pred H-HHHHHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccC-CCCcEEEEEccchhhhh
Q 042336 267 S-LLQHICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNC-LHGSKILVTTRKETVAR 323 (944)
Q Consensus 267 ~-~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 323 (944)
+ ..-.+.+.+-.++-++++|+.-.. |......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2 222455677788899999987322 233334454444432 23667888887766544
No 324
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.99 E-value=0.11 Score=55.96 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=40.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCcccc----ccCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVI----NNFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
...++-|+|.+|+||||++.+++-..... ..=..++||+....|+.+++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 45789999999999999998886532211 011278999999988888765 3445443
No 325
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.083 Score=54.78 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=55.8
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCC-CCCCCCHH---HHHHHHH
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGS-APNLGELN---SLLQHIC 273 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-~~~~~~~~---~~~~~l~ 273 (944)
+.-+++=|+|+.|+||||+|.+++-. ....-..++|++..+.+++..+..--...+..- .....+.+ ++...+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45689999999999999999887653 333344889999999999887644333312211 01112222 2333333
Q ss_pred HHhcCCceEEEeCCC
Q 042336 274 LSITGKKFLLVLDDV 288 (944)
Q Consensus 274 ~~l~~k~~LlVlDdv 288 (944)
+....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 333334679999988
No 326
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.98 E-value=0.13 Score=60.08 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=72.7
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcc-ccccCceeEEEEeCCCCCHHHHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDND-VINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
...++|....++++.+.+..-.. ....|.|+|..|+|||++|+.+++... ... .-+.|++..-. ...+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~---pfv~i~c~~~~--~~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKR---PFVKVNCAALS--ETLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCC---CeEEeecCCCC--HHHHHH
Confidence 45789999999998887754432 234577999999999999999987422 112 23444554322 122222
Q ss_pred HHHHhhCCCCCCC-C-HHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEcc
Q 042336 251 IIEALEGSAPNLG-E-LNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTTR 317 (944)
Q Consensus 251 i~~~l~~~~~~~~-~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 317 (944)
.+.+...... . .......+. ....-.|+||+|..-.......+...+..+. ...|||.||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 2222211100 0 000000010 1233468899996655555666666665432 1248888875
Q ss_pred c
Q 042336 318 K 318 (944)
Q Consensus 318 ~ 318 (944)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 3
No 327
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.96 E-value=0.52 Score=49.89 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=88.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCc---c---cc--ccCceeEEEEe-CCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDN---D---VI--NNFEKRIWVSV-SDPFDEYRVAKAIIEALEGSAPNLGELNSLLQ 270 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 270 (944)
..+..++|..|.||+++|..+.+.- . +. .|=+...++.. .....++++. ++.+.+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 4577799999999999998886631 0 01 11112223221 1111221111 1222111100
Q ss_pred HHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc-hhhhhc-ccccceEeCCCCChHHHHHHHHHH
Q 042336 271 HICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK-ETVARM-MESIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 271 ~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
.-.+.+-++|+||+...+....+.+...+......+.+|++|.+ ..+... ......+++.++++++..+.+...
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 00257778999998665555677788888887778877776643 334332 233678999999999998877654
Q ss_pred hcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 349 AFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
. . . ++.++.++...+|.=-|+..
T Consensus 162 ~---~---~----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 162 N---K---E----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred C---C---C----hhHHHHHHHHcCCHHHHHHH
Confidence 1 1 1 34455566666663244443
No 328
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.96 E-value=0.12 Score=55.99 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=40.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCcccccc----CceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINN----FEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
...++-|+|.+|+|||+++.+++-....... =..++||+..+.|+++++.+. ++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcC
Confidence 4578999999999999999888753211111 147899999998888776543 44443
No 329
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.39 Score=56.22 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=100.7
Q ss_pred ccccchh---HHHHHHHHhccCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHH
Q 042336 174 EVRGRDE---EKNTLKTKLLCENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRV 247 (944)
Q Consensus 174 ~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 247 (944)
++.|-++ |++++++.|..+.. -+..-++=+.++|++|.|||-||++++-...+ -|+++|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH------
Confidence 4677765 45555666654431 02234567889999999999999999985332 34555542
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCcc------------Cc---cChhhhHhhhccCCCCc-
Q 042336 248 AKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTE------------DY---SKWEPFHNCLMNCLHGS- 310 (944)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~------------~~---~~~~~l~~~l~~~~~gs- 310 (944)
+.++.+.+.. ....+.+.. .-...+++|.+|++... +. ...+++..-+.....++
T Consensus 379 --EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 --EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred --HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 2233332221 112222322 22467889999987321 00 11222222222222222
Q ss_pred EE-EEEccchhhhhc--c---cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 311 KI-LVTTRKETVARM--M---ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 311 ~i-ivTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
.| +-+|...++... + .-++.+.++.=+.....++|.-++-.... ..+..++++ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 33 334554444332 1 12567888888888899999988744332 234566677 888888887554
No 330
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.15 Score=57.06 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=82.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGK 279 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 279 (944)
+.=|.++|++|+|||-||++|+|. -+.+| ++|-.+ +++ ...-+ .+...+...+.+.-...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELl----NkYVG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELL----NKYVG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHH----HHHhh-----hHHHHHHHHHHHhhcCC
Confidence 456789999999999999999994 44455 444332 111 11111 01122233333343578
Q ss_pred ceEEEeCCCCcc-----CccChh------hhHhhhcc--CCCCcEEEEEccchhhhhc-c---c-ccceEeCCCCChHHH
Q 042336 280 KFLLVLDDVWTE-----DYSKWE------PFHNCLMN--CLHGSKILVTTRKETVARM-M---E-SIDILIIKELSELEC 341 (944)
Q Consensus 280 ~~LlVlDdvw~~-----~~~~~~------~l~~~l~~--~~~gs~iivTtr~~~v~~~-~---~-~~~~~~l~~L~~~~~ 341 (944)
+++|++|.+..- +...|. ++..-+.- ...|.-||-.|...++-+. + + -+...-++.=+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999988321 111222 22222221 1245556666654443221 1 1 145666777778888
Q ss_pred HHHHHHHhcCCCCC-CCchhHHHHHHHHHHhhCCCh
Q 042336 342 WSLFKRFAFFGRSP-FECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 342 ~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~GlP 376 (944)
.++++...-....+ ..+-+++++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888776532222 223355565543 4555653
No 331
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.14 Score=56.25 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=57.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCcccc--ccCceeEEEEeCCC-CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVI--NNFEKRIWVSVSDP-FDEYRVAKAIIEALEGSAPNLGELNSLLQHICLS 275 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 275 (944)
..+++.++|..|+||||.+.+++...... .+-..+..+++... .....-++...+.++.+.....+.+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999998887632211 11124555555431 1222335555555554333333444554444433
Q ss_pred hcCCceEEEeCCCCccC--ccChhhhHhhhccC
Q 042336 276 ITGKKFLLVLDDVWTED--YSKWEPFHNCLMNC 306 (944)
Q Consensus 276 l~~k~~LlVlDdvw~~~--~~~~~~l~~~l~~~ 306 (944)
.+.-+|++|..-... ......+...+...
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 445688899884322 11234454555433
No 332
>PRK10867 signal recognition particle protein; Provisional
Probab=94.92 E-value=0.11 Score=57.88 Aligned_cols=25 Identities=44% Similarity=0.523 Sum_probs=21.4
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+.+|.++|.+|+||||.+.+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998877765
No 333
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.92 E-value=0.091 Score=55.16 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.7
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 334
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.23 Score=56.33 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=36.7
Q ss_pred ccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccC
Q 042336 174 EVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF 230 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F 230 (944)
++-|.++-+.++.+.+.-+-.. +-..++-|..+|++|.|||++|+++.+ .-...|
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 4556777666666544322110 124567788999999999999999999 344444
No 335
>PRK07667 uridine kinase; Provisional
Probab=94.89 E-value=0.029 Score=55.65 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 182 KNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 182 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+.+.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345666664332 3458999999999999999999987
No 336
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.88 E-value=0.028 Score=52.67 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=26.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS 237 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 237 (944)
..||.|.|.+|+||||||+++.+ +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 4444444555554
No 337
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.6 Score=46.13 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=84.2
Q ss_pred ccc-chhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 175 VRG-RDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 175 ~vG-r~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
++| -+..+++|.+.+.-+... +-.+++-+.++|++|.|||-||++|+++ ...-|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 454 577777777766433211 2245677889999999999999999984 23446677653 2
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHH-hcCCceEEEeCCCCcc-----------Ccc---ChhhhHhhhccC--CCC
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLS-ITGKKFLLVLDDVWTE-----------DYS---KWEPFHNCLMNC--LHG 309 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~-----------~~~---~~~~l~~~l~~~--~~g 309 (944)
+.+..+.+ -....+.+.-. -...+.+|+.|.+.+. +.+ ..-++...+..+ .+.
T Consensus 217 lvqk~ige----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 LVQKYIGE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHhhh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 22221111 01122222211 1355778888877321 001 111122222211 245
Q ss_pred cEEEEEccchhhhhc-----ccccceEeCCCCChHHHHHHHHHHh
Q 042336 310 SKILVTTRKETVARM-----MESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 310 s~iivTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
-+||..|..-++.+. -..++-++.++-+++.-.++++-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 688888865544332 1235678888878777777776554
No 338
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.81 E-value=0.15 Score=56.70 Aligned_cols=24 Identities=42% Similarity=0.454 Sum_probs=21.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+.++.++|.+|+||||.|.+++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999988876
No 339
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.75 E-value=0.027 Score=50.32 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=18.6
Q ss_pred EEEEeeCCchHHHHHHHHhcCccccccCc
Q 042336 203 ISMVGMGGIGKTTLAQFVYNDNDVINNFE 231 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 231 (944)
|.|+|.+|+||||+|+.+.. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 57999999999999999998 4566664
No 340
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.75 E-value=0.049 Score=59.29 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=68.0
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIE 253 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 253 (944)
.++|+++....+...+..+. -+.+.|.+|+|||+||+.+... .. -...+|.+.....+.+++-...-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchhH
Confidence 38888888888877776443 4789999999999999999883 32 23456777777777666544333
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhcc
Q 042336 254 ALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMN 305 (944)
Q Consensus 254 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~ 305 (944)
........... -...-+ ...-+.++.+|.++...+..-..+...+..
T Consensus 92 ~~~~~~~~~~~--~~~gpl---~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 92 AALLLEPGEFR--FVPGPL---FAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhhccCCeEE--EecCCc---ccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 22110000000 000000 011115899999987766555556655554
No 341
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.74 E-value=0.02 Score=52.50 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEEeeCCchHHHHHHHHhcC
Q 042336 203 ISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~ 223 (944)
|+|.|.+|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 342
>PTZ00301 uridine kinase; Provisional
Probab=94.73 E-value=0.031 Score=55.87 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47899999999999999998876
No 343
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.72 E-value=0.13 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.1
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...++.|+|.+|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999873
No 344
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.68 E-value=0.11 Score=56.99 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=19.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5799999999999999999854
No 345
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.61 E-value=0.12 Score=59.72 Aligned_cols=133 Identities=13% Similarity=0.131 Sum_probs=74.4
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
...++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++.... .-...+.|++..-.+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~--~~~e~- 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE--SLAES- 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh--HHHHH-
Confidence 45689999999988888865433 3346889999999999999999874221 112335556554332 22221
Q ss_pred HHHhhCCCCCCC-C-HHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEccc
Q 042336 252 IEALEGSAPNLG-E-LNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTTRK 318 (944)
Q Consensus 252 ~~~l~~~~~~~~-~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 318 (944)
.+.+...... . .......+. ....=.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 257 --~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 257 --ELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred --HhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 2222111100 0 000000111 1122247899996655555666666665432 24588888854
No 346
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.59 E-value=0.14 Score=51.23 Aligned_cols=118 Identities=15% Similarity=0.096 Sum_probs=59.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCc--c-cccc--Cc--------------e-eEEEEeCCCCCH--HHHHHHHHHHhhC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDN--D-VINN--FE--------------K-RIWVSVSDPFDE--YRVAKAIIEALEG 257 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~--~-~~~~--F~--------------~-~~wv~vs~~~~~--~~~~~~i~~~l~~ 257 (944)
-.+++|+|..|.|||||.+.+.... . ..+. |+ . +.++ .+.... .....+++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~--- 100 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRY--- 100 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhh---
Confidence 3689999999999999999987741 1 1110 00 0 1121 121110 0111111111
Q ss_pred CCCCCCCH-HHHHHHHHHHhcCCceEEEeCCCCc-cCccChhhhHhhhccC-CCCcEEEEEccchhhhh
Q 042336 258 SAPNLGEL-NSLLQHICLSITGKKFLLVLDDVWT-EDYSKWEPFHNCLMNC-LHGSKILVTTRKETVAR 323 (944)
Q Consensus 258 ~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 323 (944)
.....+. +...-.+.+.+-..+-++++|+.-. -|......+...+... ..|.-||++|.+.....
T Consensus 101 -~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 101 -VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 1112222 2233345566677888999998732 1333344454544432 23556777777665544
No 347
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.58 E-value=0.027 Score=56.76 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.6
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+...+|+|+|.+|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 348
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.58 E-value=0.23 Score=51.31 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.4
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988865
No 349
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.55 E-value=0.022 Score=45.51 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+++|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 350
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.3 Score=56.59 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=82.7
Q ss_pred ccccchhHHHHHHHHhcc---CCcc----cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 174 EVRGRDEEKNTLKTKLLC---ENSE----EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~---~~~~----~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+.|.+...+.+.+.+.. .... .-...+.+.++|++|.|||.||+++++ ....+|- .+... +
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~----~ 311 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS----E 311 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH----H
Confidence 355666655555544321 1110 123456889999999999999999999 3334442 22211 1
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCc-----cCc------cChhhhHhhhccCC--CCcEEE
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWT-----EDY------SKWEPFHNCLMNCL--HGSKIL 313 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-----~~~------~~~~~l~~~l~~~~--~gs~ii 313 (944)
++ .. ... .....+...+....+..+..|++|.+.. .+. ....++...+.... .+..||
T Consensus 312 l~----sk----~vG-esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 312 LL----SK----WVG-ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred Hh----cc----ccc-hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 11 00 000 1112233333344468899999999832 110 12222333332122 333344
Q ss_pred EEccchhhhhc-c----cccceEeCCCCChHHHHHHHHHHhc
Q 042336 314 VTTRKETVARM-M----ESIDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 314 vTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
-||........ + .-...+.+.+-+.++..+.|..+.-
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 45543332221 1 1255788888899999999998864
No 351
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.53 E-value=0.084 Score=57.49 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=49.4
Q ss_pred CccccchhHHHHHHHHhccC--------CcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC---ceeEEEEeC-C
Q 042336 173 SEVRGRDEEKNTLKTKLLCE--------NSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF---EKRIWVSVS-D 240 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~ 240 (944)
..++|.++.++.+...+... .-...-.++-|.++|++|+|||++|+.+... ....| +..-+...+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45889998888887666531 0001123467889999999999999999883 33333 222222221 2
Q ss_pred CCCHHHHHHHHHHHh
Q 042336 241 PFDEYRVAKAIIEAL 255 (944)
Q Consensus 241 ~~~~~~~~~~i~~~l 255 (944)
..+.+.+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665543
No 352
>PTZ00035 Rad51 protein; Provisional
Probab=94.52 E-value=0.25 Score=53.49 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=40.1
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCcccc----ccCceeEEEEeCCCCCHHHHHHHHHHHhhC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVI----NNFEKRIWVSVSDPFDEYRVAKAIIEALEG 257 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 257 (944)
.-.++.|+|.+|+|||||+..++-..... +.=..++|++....++++++ .+++++++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 45799999999999999998886432211 11235679998888888774 444555543
No 353
>PRK05973 replicative DNA helicase; Provisional
Probab=94.51 E-value=0.35 Score=49.16 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=71.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCC-----------CCCCCHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSA-----------PNLGELNS 267 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~~ 267 (944)
.-.++.|.|.+|+|||++|.++...- .+ +=..+++++.... ..++...+. +++... .+....+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a~-~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-MK-SGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHH
Confidence 34688899999999999998876532 12 2345677766553 445544432 222211 11122333
Q ss_pred HHHHHHHHhcCCceEEEeCCCCcc----CccChhhhHhhhcc--CCCCcEEEEEccchh-hhhcccccceEeCCCCChHH
Q 042336 268 LLQHICLSITGKKFLLVLDDVWTE----DYSKWEPFHNCLMN--CLHGSKILVTTRKET-VARMMESIDILIIKELSELE 340 (944)
Q Consensus 268 ~~~~l~~~l~~k~~LlVlDdvw~~----~~~~~~~l~~~l~~--~~~gs~iivTtr~~~-v~~~~~~~~~~~l~~L~~~~ 340 (944)
+...+.. ..+.-+||+|-+..- +......+...+.. ...|.-||+|+.... +...........=-.++..-
T Consensus 138 ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR~~~~~ 215 (237)
T PRK05973 138 IIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDVRLPNPL 215 (237)
T ss_pred HHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhcCCCChh
Confidence 3333333 223459999987321 11111221111111 135777888876432 22111110100001223344
Q ss_pred HHHHHHHHhcCCC
Q 042336 341 CWSLFKRFAFFGR 353 (944)
Q Consensus 341 ~~~lf~~~~~~~~ 353 (944)
-..||.+..|-..
T Consensus 216 d~~~f~~~~~~~~ 228 (237)
T PRK05973 216 DLSLFDKACFLNN 228 (237)
T ss_pred hHHHhhhhheecC
Confidence 4677777766543
No 354
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.50 E-value=0.024 Score=59.31 Aligned_cols=94 Identities=28% Similarity=0.347 Sum_probs=47.8
Q ss_pred HHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHH-hhCCCCC
Q 042336 183 NTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEA-LEGSAPN 261 (944)
Q Consensus 183 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~ 261 (944)
..+++.+... -+-+.++|..|+|||++++...+... ...| ...-++.+...+...++ .+++. +......
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHH-HCCCTTECECTTE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCC
Confidence 4455555432 24568999999999999999876311 1111 23345556554444333 22221 1110000
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeCCCCccCccCh
Q 042336 262 LGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKW 296 (944)
Q Consensus 262 ~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~ 296 (944)
...--.+|+.++++||+--...+.|
T Consensus 93 ----------~~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 93 ----------VYGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp ----------EEEEESSSEEEEEEETTT-S---TT
T ss_pred ----------CCCCCCCcEEEEEecccCCCCCCCC
Confidence 0001157889999999944333333
No 355
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.019 Score=57.99 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=69.5
Q ss_pred ccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCccccc--ccCcc
Q 042336 550 MFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIK--ELPDT 627 (944)
Q Consensus 550 ~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~--~lP~~ 627 (944)
-..+++++.+++.++.... ...+..++.++|.|++|+|+.|.....|+.+| -.+.+|+.|-|.++.+. ..-..
T Consensus 67 ~~~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHHhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhh
Confidence 3468899999999886422 44466678999999999999999777677776 34678999999998864 56666
Q ss_pred ccCCCcccEEEecCcc
Q 042336 628 CCELFNLQTIEIEGCY 643 (944)
Q Consensus 628 i~~L~~L~~L~L~~~~ 643 (944)
+..++.++.|.++.|.
T Consensus 142 l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS 157 (418)
T ss_pred hhcchhhhhhhhccch
Confidence 7888889999888774
No 356
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.45 E-value=0.21 Score=54.67 Aligned_cols=82 Identities=28% Similarity=0.276 Sum_probs=47.1
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCC-----CCCHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPN-----LGELNSLLQHIC 273 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 273 (944)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+ ..-+++++..... ..+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3468999999999999999988763 2223346778776543 3332 2223444432111 123344433332
Q ss_pred HHhcCCceEEEeCCC
Q 042336 274 LSITGKKFLLVLDDV 288 (944)
Q Consensus 274 ~~l~~k~~LlVlDdv 288 (944)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567788877
No 357
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.45 E-value=0.038 Score=58.46 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=44.3
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...|+|.++.++++++.+...+...+..-+|+.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999876654556778999999999999999998877
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.44 E-value=0.083 Score=50.47 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=60.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC--CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF--DEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
.+++|+|..|.|||||++.+.... ......+++...... ...... ..+.-.. ....-+...-.+...+-.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 589999999999999999998732 223344444321111 111111 1111000 011112223335556667
Q ss_pred CceEEEeCCCCcc-CccChhhhHhhhccC-CCCcEEEEEccchhhhhc
Q 042336 279 KKFLLVLDDVWTE-DYSKWEPFHNCLMNC-LHGSKILVTTRKETVARM 324 (944)
Q Consensus 279 k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 324 (944)
.+-++++|+.-.. |......+...+... ..+.-+|++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7889999987421 223344444444322 124567777776655443
No 359
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.44 E-value=0.028 Score=56.69 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=23.1
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+..+|+|.|.+|+||||||+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 360
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.43 E-value=0.16 Score=51.64 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=65.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCcc-----cc------ccC---ceeEEEEeCCCC------CH----------------
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDND-----VI------NNF---EKRIWVSVSDPF------DE---------------- 244 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~vs~~~------~~---------------- 244 (944)
.+++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999976211 00 001 234555311111 11
Q ss_pred ------HHHHHHHHHHhhCC-----CCCCCCHHHHHH-HHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccC-CCCc
Q 042336 245 ------YRVAKAIIEALEGS-----APNLGELNSLLQ-HICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNC-LHGS 310 (944)
Q Consensus 245 ------~~~~~~i~~~l~~~-----~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs 310 (944)
.+...+.+++++.. .-...+-.+.++ .+.+.|-..+=|+|||.--.. |...-..+...+..- ..|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 13344445554432 122233344444 456788899999999964221 222222333333321 1277
Q ss_pred EEEEEccchhh
Q 042336 311 KILVTTRKETV 321 (944)
Q Consensus 311 ~iivTtr~~~v 321 (944)
-|+++|-+-..
T Consensus 191 tIl~vtHDL~~ 201 (254)
T COG1121 191 TVLMVTHDLGL 201 (254)
T ss_pred EEEEEeCCcHH
Confidence 78888876543
No 361
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=0.27 Score=53.04 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=52.4
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC-CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHh
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP-FDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSI 276 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 276 (944)
...+++.++|+.|+||||++..+.... ...-..+.+|++... ....+-++...+.++.......+...+...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 346899999999999999999887632 222234666766432 22344455555555433222334445544443322
Q ss_pred -cCCceEEEeCCCCc
Q 042336 277 -TGKKFLLVLDDVWT 290 (944)
Q Consensus 277 -~~k~~LlVlDdvw~ 290 (944)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13446788887743
No 362
>PRK08233 hypothetical protein; Provisional
Probab=94.41 E-value=0.029 Score=55.27 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999874
No 363
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.41 E-value=0.14 Score=49.58 Aligned_cols=118 Identities=15% Similarity=0.011 Sum_probs=64.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC---CCCHHHHHHHHH--HH--hhCCC-----CCCCC---
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD---PFDEYRVAKAII--EA--LEGSA-----PNLGE--- 264 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~--~~--l~~~~-----~~~~~--- 264 (944)
...|-|+|-.|-||||.|..+.- +..++=-.+..|.+-. ......+++.+- .- .+... ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 35788999999999999976654 2222222333333322 234444443320 00 00100 00011
Q ss_pred HHHHHHHHHHHhcC-CceEEEeCCCCc---cCccChhhhHhhhccCCCCcEEEEEccch
Q 042336 265 LNSLLQHICLSITG-KKFLLVLDDVWT---EDYSKWEPFHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 265 ~~~~~~~l~~~l~~-k~~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 319 (944)
........++.+.. +-=|||||.+-. ...-..+++...+.....+.-||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223333445544 445999999822 12345677888887777788999999975
No 364
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.40 E-value=0.12 Score=54.16 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=47.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCH--HHHHHHHHHHhhCCC---CCCCCHHH-HHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDE--YRVAKAIIEALEGSA---PNLGELNS-LLQHI 272 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 272 (944)
..+++.++|.+|+||||++.+++.. ....-..++++++.. +.. .+-++...+..+... ....+... ....+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999999999888763 222223555665442 222 233333444444221 11122222 22333
Q ss_pred HHHhcCCceEEEeCCC
Q 042336 273 CLSITGKKFLLVLDDV 288 (944)
Q Consensus 273 ~~~l~~k~~LlVlDdv 288 (944)
........=++++|-.
T Consensus 148 ~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 148 QKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHCCCCEEEEeCC
Confidence 3333344557888876
No 365
>PRK06547 hypothetical protein; Provisional
Probab=94.39 E-value=0.046 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.0
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 366
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.39 E-value=0.02 Score=57.20 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=47.0
Q ss_pred hhcccccceeccCcccccccCccccCCCcccEEEecCc--cCCcccCcccccCCCCceeecccccccc
Q 042336 605 IQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGC--YNLNRLPQGVGKLVNLRHLIFDVNFVEY 670 (944)
Q Consensus 605 i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 670 (944)
.-.+..|.+|++.++.++++- .+-.|++|++|.++.| +....++.-..++++|++|+++.|.+..
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 344566777777776654331 2336889999999999 5455666667788999999998887764
No 367
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.067 Score=58.58 Aligned_cols=52 Identities=29% Similarity=0.305 Sum_probs=37.0
Q ss_pred ccccchh---HHHHHHHHhccCCcc---cCCceEEEEEEeeCCchHHHHHHHHhcCcc
Q 042336 174 EVRGRDE---EKNTLKTKLLCENSE---EQNAVQVISMVGMGGIGKTTLAQFVYNDND 225 (944)
Q Consensus 174 ~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~ 225 (944)
++-|-|+ |+++|+++|-.+..- +..-++=|.++|++|.|||-||++|+-...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 4556664 667777888654320 223456788999999999999999998543
No 368
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=1.1 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-|--.++|++|.|||+++.++++.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhh
Confidence 355678999999999999999984
No 369
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.33 E-value=0.12 Score=48.67 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
|+.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998873
No 370
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.32 E-value=0.024 Score=33.45 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=14.8
Q ss_pred cccEEEecCccCCcccCccccc
Q 042336 633 NLQTIEIEGCYNLNRLPQGVGK 654 (944)
Q Consensus 633 ~L~~L~L~~~~~l~~lp~~i~~ 654 (944)
+|++||+++|. +..+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 57788888875 6677776554
No 371
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.31 E-value=0.43 Score=48.03 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=31.6
Q ss_pred HHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccchhhhh
Q 042336 271 HICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRKETVAR 323 (944)
Q Consensus 271 ~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 323 (944)
.+.+.+-.++-++++|+.... |....+.+...+.....|..||++|.+.....
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 344556667789999987432 33344445555554334666777777665543
No 372
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.29 E-value=0.11 Score=52.99 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHhhhhccchhhHHH
Q 042336 5 FVSVVLEQLISVAVEEAKKEVRLVDGVDQEVEKLTSNFRAIQAVIVDAEQR-QIKEESVRLWLDQLKHTSYDMEDVLDEW 83 (944)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~-~~~~~~~~~wl~~lr~~~yd~ed~ld~~ 83 (944)
.|..++++|-. +.......+.-++.+++-++.+++.+|.||+..... ..+......+..++-..||++|.++|.+
T Consensus 297 yVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 297 YVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 34556666665 554555566678999999999999999999987443 4444558899999999999999999976
Q ss_pred H
Q 042336 84 N 84 (944)
Q Consensus 84 ~ 84 (944)
.
T Consensus 373 i 373 (402)
T PF12061_consen 373 I 373 (402)
T ss_pred h
Confidence 3
No 373
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.29 E-value=0.05 Score=49.54 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=29.3
Q ss_pred hHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc
Q 042336 180 EEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN 224 (944)
Q Consensus 180 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 224 (944)
++.+++-+.|...- ..-.+|.+.|.-|+||||+++.+.+..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45555555554322 133589999999999999999998853
No 374
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.28 E-value=0.08 Score=52.82 Aligned_cols=120 Identities=12% Similarity=0.143 Sum_probs=57.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHHH-
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNL---GELNSLLQHICLS- 275 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~- 275 (944)
.+++.|.|..|.||||+.+.+..-.-. . ....+|.+.. .. -.+...|...++...... .....-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a--~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-A--QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-H--HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 378999999999999999888642110 0 1111121111 00 022222222222211110 0111111111221
Q ss_pred -hcCCceEEEeCCCCcc-CccCh----hhhHhhhccCCCCcEEEEEccchhhhhccc
Q 042336 276 -ITGKKFLLVLDDVWTE-DYSKW----EPFHNCLMNCLHGSKILVTTRKETVARMME 326 (944)
Q Consensus 276 -l~~k~~LlVlDdvw~~-~~~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 326 (944)
+..++-|+++|..-.. ++.+. ..+...+.. .|+.+|++|-..+.+....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2356789999997332 12121 122223333 3788999999888776544
No 375
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.28 E-value=0.31 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999975
No 376
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.25 E-value=0.085 Score=57.44 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=57.8
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcCccc----cccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYNDNDV----INNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHIC 273 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 273 (944)
..++=+.|||..|.|||.|.-.+|+...+ +-|| .....++-+.+..-......+. .+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF--------------h~Fm~~vh~~l~~~~~~~~~l~----~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF--------------HEFMLDVHSRLHQLRGQDDPLP----QVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccc--------------cHHHHHHHHHHHHHhCCCccHH----HHH
Confidence 35677899999999999999999985332 2233 1333333333332211222222 333
Q ss_pred HHhcCCceEEEeCCCCccCccChhhhHhhhccC-CCCcEEEEEccchh
Q 042336 274 LSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNC-LHGSKILVTTRKET 320 (944)
Q Consensus 274 ~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~ 320 (944)
+.+.++..||.||.+.-.+..+--.+...|..- ..|. |||+|.+..
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRP 168 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCC
Confidence 445677779999988544443333333333322 3455 555555543
No 377
>PRK06762 hypothetical protein; Provisional
Probab=94.24 E-value=0.031 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 378
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.21 E-value=0.12 Score=49.73 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|.+.|.+|+||||+|+++.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred eEEEecCCCCCchHHHHHHHH
Confidence 577899999999999999987
No 379
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.20 E-value=0.28 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|+|..|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 380
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.19 E-value=0.063 Score=56.84 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=49.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-----NLGELNSLLQHIC 273 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 273 (944)
.-+++-|+|..|+||||||..+.. .....-..++||.....+++.. +++++.+.. .....++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 346899999999999999988887 3333445788999988777644 334433211 1123344555555
Q ss_pred HHhc-CCceEEEeCCC
Q 042336 274 LSIT-GKKFLLVLDDV 288 (944)
Q Consensus 274 ~~l~-~k~~LlVlDdv 288 (944)
+.++ +..-++|+|.|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5554 34458899987
No 381
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.12 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 382
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.17 E-value=0.42 Score=51.36 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEEeeCCchHHHHHHHHhcC
Q 042336 203 ISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~ 223 (944)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 383
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.03 Score=54.34 Aligned_cols=24 Identities=46% Similarity=0.553 Sum_probs=21.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 384
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.16 E-value=0.14 Score=53.31 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=58.7
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE---eCCCCCHHHHHHHHHHHhhCCC-------CCCCCHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS---VSDPFDEYRVAKAIIEALEGSA-------PNLGELNSL 268 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~ 268 (944)
...-++|+|..|.|||||.+.+... +. .....+++. +...... .++......-. .+..+....
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccchH
Confidence 3567899999999999999999873 21 222333332 1110111 22322222110 011111111
Q ss_pred HHHHHHHh-cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhhh
Q 042336 269 LQHICLSI-TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVAR 323 (944)
Q Consensus 269 ~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 323 (944)
...+...+ ...+=++++|.+-. .+.+..+...+ ..|..||+||.+..+..
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 11222222 25788999999843 23344444444 24778999998765533
No 385
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.05 E-value=0.097 Score=48.32 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=31.9
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCC
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGS 258 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 258 (944)
+|.|-|.+|+||||+|+.+.++...+ | + +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-------v----saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-------V----SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-------e----eccHHHHHHHHHcCCC
Confidence 68899999999999999999853221 1 1 2236788888876654
No 386
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.5 Score=47.09 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=37.7
Q ss_pred ccccchhHHHHHHHHhccCCc-------ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC
Q 042336 174 EVRGRDEEKNTLKTKLLCENS-------EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF 230 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F 230 (944)
++-|=.++++++.+....+-- -+-+.++-|.++|++|.|||-+|++|+| +....|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 455677778877765532210 0224556788999999999999999999 444444
No 387
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.97 E-value=0.26 Score=49.63 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=35.8
Q ss_pred HHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccC-CCCcEEEEEccchhhhhcccccceEeCCC
Q 042336 272 ICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNC-LHGSKILVTTRKETVARMMESIDILIIKE 335 (944)
Q Consensus 272 l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l~~ 335 (944)
+.+.+-.++-++++|+--.. |......+...+... ..|..||++|.+...... .+++.+..
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 44555677889999986321 333344455555432 246668888877654443 55666655
No 388
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.95 E-value=0.76 Score=45.00 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.|++|+|+.|+|||||.+.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 36899999999999999999865
No 389
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.95 E-value=0.37 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-.+++|.|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999763
No 390
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.93 E-value=0.27 Score=49.23 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=35.3
Q ss_pred HHHHhcCCceEEEeCCCCcc-CccChh-hhHhhhccCCC--CcEEEEEccchhhhhcccccceEeC
Q 042336 272 ICLSITGKKFLLVLDDVWTE-DYSKWE-PFHNCLMNCLH--GSKILVTTRKETVARMMESIDILII 333 (944)
Q Consensus 272 l~~~l~~k~~LlVlDdvw~~-~~~~~~-~l~~~l~~~~~--gs~iivTtr~~~v~~~~~~~~~~~l 333 (944)
+.+.+..++-++++|+.-.. +..... .+...+..... |.-||++|.+.+.... ...++.+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 45566788899999987432 233334 45555543322 5568888877766543 3344444
No 391
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.92 E-value=0.15 Score=53.20 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=29.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD 240 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 240 (944)
.-+++.|.|.+|+|||++|.++... .. ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~-~a-~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT-QA-SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hCCCcEEEEEecC
Confidence 4578999999999999999887553 11 2234678888764
No 392
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.27 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 393
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.90 E-value=0.045 Score=55.57 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.2
Q ss_pred EEEEeeCCchHHHHHHHHhcC
Q 042336 203 ISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~ 223 (944)
|.|.|++|+||||+|+.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999773
No 394
>PRK04040 adenylate kinase; Provisional
Probab=93.85 E-value=0.043 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|+|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 395
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.82 E-value=0.072 Score=52.07 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 396
>PRK03839 putative kinase; Provisional
Probab=93.81 E-value=0.039 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=20.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 397
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.78 E-value=0.12 Score=56.49 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=49.0
Q ss_pred CccccchhHHHHHHHHhccC--------CcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC---ceeEEEEeC-C
Q 042336 173 SEVRGRDEEKNTLKTKLLCE--------NSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF---EKRIWVSVS-D 240 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~ 240 (944)
..++|.++.++.+..++... .....-..+-+.++|++|+|||+||+.+... ....| +..-|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 45889999998888777431 0001112467899999999999999999873 33333 222222211 1
Q ss_pred CCCHHHHHHHHHHHh
Q 042336 241 PFDEYRVAKAIIEAL 255 (944)
Q Consensus 241 ~~~~~~~~~~i~~~l 255 (944)
..+.+.+++.+....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 225556666655544
No 398
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.77 E-value=0.22 Score=59.25 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=79.4
Q ss_pred ccccchhHHHHHHHHhccCCcc------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSE------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRV 247 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 247 (944)
++.|.+...+++.+.+...... ...-.+-+.++|++|+|||++|+.+.+. ....| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 4667776665555543211100 0111234889999999999999999873 22232 2222221 1
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccC----------ccChhhhHh-hh---cc--CCCCcE
Q 042336 248 AKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTED----------YSKWEPFHN-CL---MN--CLHGSK 311 (944)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~l~~-~l---~~--~~~gs~ 311 (944)
. ....+ .....+...+.......+.+|++|+++.-. ...+..... .+ .. ...+.-
T Consensus 222 ~----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 V----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred H----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1 11101 011122223333334578999999984310 011222222 21 11 123445
Q ss_pred EEEEccchhhhhc-c----cccceEeCCCCChHHHHHHHHHHhc
Q 042336 312 ILVTTRKETVARM-M----ESIDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 312 iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
||.||...+.... . .-.+.+.+..-+.++-.+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 6667765543222 1 1246777888888888888877653
No 399
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.75 E-value=0.41 Score=49.35 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=35.6
Q ss_pred HHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccchhhhhcccccceEeC
Q 042336 271 HICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRKETVARMMESIDILII 333 (944)
Q Consensus 271 ~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 333 (944)
.+.+.+-.++-+++||+.... |......+...+.....|..||++|.+...... ..+.+.+
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 445666778889999987432 333344455555443336667777776655543 3344444
No 400
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.73 E-value=0.14 Score=49.26 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=44.4
Q ss_pred EEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC--Cc
Q 042336 203 ISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG--KK 280 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~ 280 (944)
+.|.|.+|+|||++|.++... ....++++.-.+.++.+ ..+.|.+..... +......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 678999999999999988753 22466777666666553 333333322222 2222222222233333321 33
Q ss_pred eEEEeCCC
Q 042336 281 FLLVLDDV 288 (944)
Q Consensus 281 ~LlVlDdv 288 (944)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999987
No 401
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.73 E-value=0.31 Score=56.99 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=58.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccC---ceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNF---EKRIWVSVSDPFDEYRVAKAIIEALEGSAPNL---GELNSLLQHICL 274 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 274 (944)
++..|.|.+|.||||++..+... ..... ...+.+......-...+.+.+...+..-.... .........+++
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHr 245 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHR 245 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHH
Confidence 58889999999999999888763 21111 23555555555444555554443332110000 000001122222
Q ss_pred Hhc------------CCc---eEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh
Q 042336 275 SIT------------GKK---FLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET 320 (944)
Q Consensus 275 ~l~------------~k~---~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 320 (944)
.|. +.+ =+||+|...--+...+..+..+++ +++|+|+---..+
T Consensus 246 lLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 246 LLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred HhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 221 111 289999884333333444444444 5788888765443
No 402
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.73 E-value=0.32 Score=49.85 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=29.2
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD 240 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 240 (944)
.-.++.|.|.+|+||||+|.++.... . ..-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccC
Confidence 45789999999999999998876421 1 2235678887644
No 403
>PRK06217 hypothetical protein; Validated
Probab=93.71 E-value=0.15 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 404
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.69 E-value=0.08 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999885
No 405
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.66 E-value=0.27 Score=48.83 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=26.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccC--------ceeEEEEeCCC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNF--------EKRIWVSVSDP 241 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 241 (944)
.++.|.|.+|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 378899999999999998887643222222 35677776654
No 406
>PRK04328 hypothetical protein; Provisional
Probab=93.64 E-value=0.24 Score=51.40 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=33.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
.-.++.|.|.+|+|||+||.++... .. ..-..++|++..+ ++..+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee--~~~~i~~ 68 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEE--HPVQVRR 68 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeC--CHHHHHH
Confidence 4578999999999999999887653 12 2345678888766 3444433
No 407
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.59 E-value=0.12 Score=54.23 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=37.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
.-+++.|+|.+|+|||+++.++.. +...+...++||+..+. ...+.+.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 557999999999999999988887 34455888999998873 44444443
No 408
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.57 E-value=0.21 Score=44.64 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=33.4
Q ss_pred ccccchhHHHHHHHH----hccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 174 EVRGRDEEKNTLKTK----LLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~----L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.++|.+-..+.+++. +... ...++-|++.+|..|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 466666555555444 4333 3467789999999999999988888764
No 409
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.57 E-value=0.056 Score=65.14 Aligned_cols=24 Identities=21% Similarity=0.175 Sum_probs=21.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+.+++.|+|+.|.||||+.+.+.-
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 347899999999999999998865
No 410
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=0.011 Score=59.06 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=47.9
Q ss_pred CCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCc--cccC
Q 042336 553 AKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPD--TCCE 630 (944)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~--~i~~ 630 (944)
+.+++.|++.|+..+. -.++..++.|.||.|+=|. |..+ +.+..|+.|+.|.|+.|.|..+-+ .+.+
T Consensus 18 l~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNk----IssL-~pl~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNK----ISSL-APLQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccH------HHHHHhcccceeEEeeccc----cccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 4455556666655321 1225667777777777666 5444 346667777777777777654422 3556
Q ss_pred CCcccEEEecCccC
Q 042336 631 LFNLQTIEIEGCYN 644 (944)
Q Consensus 631 L~~L~~L~L~~~~~ 644 (944)
|++|++|.|..|..
T Consensus 87 lpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 87 LPSLRTLWLDENPC 100 (388)
T ss_pred CchhhhHhhccCCc
Confidence 66677776665543
No 411
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.51 E-value=0.38 Score=54.16 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=46.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
.+|++++|..|+||||++.+++.....+..-..+..|.... .....+-++...+.++.......+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999987322222112345555432 22333444444555443322222222222222 23344
Q ss_pred CceEEEeCCCC
Q 042336 279 KKFLLVLDDVW 289 (944)
Q Consensus 279 k~~LlVlDdvw 289 (944)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 467777763
No 412
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.51 E-value=0.11 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=18.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999999873
No 413
>PRK00625 shikimate kinase; Provisional
Probab=93.51 E-value=0.046 Score=52.86 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 414
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.50 E-value=0.82 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-.+++|.|..|.|||||++.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 358999999999999999999774
No 415
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.14 Score=54.71 Aligned_cols=81 Identities=26% Similarity=0.266 Sum_probs=51.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCC-----CCCHHHHHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPN-----LGELNSLLQHICL 274 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 274 (944)
-.++.|-|-+|||||||.-++..+ ....- .+++|+-.+ +...+ +--+++++....+ ..+++.+.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~- 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE- 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH-
Confidence 468999999999999999999883 33333 667766544 33322 2334555543322 234555555444
Q ss_pred HhcCCceEEEeCCCC
Q 042336 275 SITGKKFLLVLDDVW 289 (944)
Q Consensus 275 ~l~~k~~LlVlDdvw 289 (944)
+.++-++|+|.+.
T Consensus 166 --~~~p~lvVIDSIQ 178 (456)
T COG1066 166 --QEKPDLVVIDSIQ 178 (456)
T ss_pred --hcCCCEEEEeccc
Confidence 4788899999983
No 416
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.48 E-value=0.37 Score=55.35 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=41.1
Q ss_pred HHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 183 NTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 183 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
..+-++|..+- ..-.++.|.|.+|+|||||+.++... ...+-+.+++++..+ +...+.+.+ +.++
T Consensus 250 ~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWG 314 (484)
T ss_pred HhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcC
Confidence 34444554432 24578999999999999999888763 222335667776655 455555553 4443
No 417
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.41 E-value=0.65 Score=46.98 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|+|..|.|||||++.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 418
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.40 E-value=0.58 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 419
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.35 E-value=0.16 Score=50.91 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=49.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCCCCHH------
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF-DEYRVAKAIIEALEGS-------APNLGELN------ 266 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 266 (944)
..++|.|.+|+|||+|+..+.+.. .-+..+++.+.+.. .+.++.+++...-... ..+..-..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 457899999999999999998843 22344788887653 4555555553320000 11111011
Q ss_pred ---HHHHHHHHHhcCCceEEEeCCC
Q 042336 267 ---SLLQHICLSITGKKFLLVLDDV 288 (944)
Q Consensus 267 ---~~~~~l~~~l~~k~~LlVlDdv 288 (944)
...+.+++ +++..|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 11222222 799999999999
No 420
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.74 Score=45.80 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=38.3
Q ss_pred CccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+++-|-+..++++++.+.-+-.. +-..++-+..+|++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 35678999999999887543221 223456788999999999999999887
No 421
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.84 Score=46.92 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=34.8
Q ss_pred HHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccchhhhhcccccceEeC
Q 042336 271 HICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRKETVARMMESIDILII 333 (944)
Q Consensus 271 ~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 333 (944)
.+.+.+-.++-+++||+.-.. |......+...+.....|..||++|.+...... .++++.+
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 344556667779999987321 333444455555443346667888776655443 3344444
No 422
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.34 E-value=0.15 Score=59.00 Aligned_cols=133 Identities=13% Similarity=0.024 Sum_probs=69.8
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++|....+.++++.+..-.. .-.-|.|+|..|+||+++|+.++..... .-..-+.++++.-. ...+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~r--~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSPR--GKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeccccCC--HHHHHH--
Confidence 3588998888887776643221 1234789999999999999998763211 11222455555432 222222
Q ss_pred HHhhCCCCCCC-CHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEccc
Q 042336 253 EALEGSAPNLG-ELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTTRK 318 (944)
Q Consensus 253 ~~l~~~~~~~~-~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 318 (944)
.+.+..+... .......-+.+ ....=.|+||++..-.......+...+..+. ...|||.||..
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 2222211100 00000000111 1122357899997665555566666665531 12378887764
No 423
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.33 E-value=0.52 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999874
No 424
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.31 E-value=0.32 Score=53.79 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=44.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
...+++++|..|+||||++.++..........+.+..+.... .....+-+....+.++.+.....+..+....+. .+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999988765211111223344444332 122333344444444433322233333332222 234
Q ss_pred CCceEEEeCCC
Q 042336 278 GKKFLLVLDDV 288 (944)
Q Consensus 278 ~k~~LlVlDdv 288 (944)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 34566665
No 425
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.29 E-value=1 Score=46.46 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=67.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
+.+.++|+.|+|||+-++.+++. ....+.+..+..+....+...+.......... ........+...+++..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccCc
Confidence 47889999999999999999983 12233445677777777777776666554322 22334445555668888
Q ss_pred eEEEeCCCCccCccChhhhHhhhccCC
Q 042336 281 FLLVLDDVWTEDYSKWEPFHNCLMNCL 307 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~l~~~l~~~~ 307 (944)
-+++.|+...-....++.++......+
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhhC
Confidence 899999986655566666665554433
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.26 E-value=0.49 Score=56.08 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=47.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
.+|++++|+.|+||||.+.++.........-..+..++... .....+-++...+.++.+.....+.+.+...+. .+++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcC
Confidence 47999999999999999988886321111112445554432 112334455555555443332334444444443 2343
Q ss_pred CceEEEeCCC
Q 042336 279 KKFLLVLDDV 288 (944)
Q Consensus 279 k~~LlVlDdv 288 (944)
+ =+|++|-.
T Consensus 264 ~-D~VLIDTA 272 (767)
T PRK14723 264 K-HLVLIDTV 272 (767)
T ss_pred C-CEEEEeCC
Confidence 3 35666655
No 427
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.26 E-value=0.13 Score=52.07 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHH
Q 042336 181 EKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 248 (944)
+..++++.+.... ++..+|+|.|.||+|||||...+......+++=-.++=|.=|.+++-=.++
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 5556666665432 356799999999999999998887743222222223333334455443433
No 428
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.26 E-value=0.06 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.5
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|.|.|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 429
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.25 E-value=0.25 Score=54.51 Aligned_cols=84 Identities=15% Similarity=0.187 Sum_probs=49.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCC-HHHHHHHHHHHhhCC-------CCCCCCHH-----H
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFD-EYRVAKAIIEALEGS-------APNLGELN-----S 267 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 267 (944)
..++|+|..|+|||||++.+.+.. ..+.++.+-+.+... +.++...++..-... ..+..-.. .
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999998731 224566666766543 345555544331111 11111111 1
Q ss_pred HHHHHHHHh--cCCceEEEeCCC
Q 042336 268 LLQHICLSI--TGKKFLLVLDDV 288 (944)
Q Consensus 268 ~~~~l~~~l--~~k~~LlVlDdv 288 (944)
..-.+.+++ +++.+|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 111233333 689999999999
No 430
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.25 E-value=0.78 Score=45.87 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 368999999999999999998764
No 431
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.21 E-value=0.42 Score=53.12 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=48.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCC------CCCCCCHH-----HH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGS------APNLGELN-----SL 268 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~~ 268 (944)
-..++|+|..|+|||||++.+..... ....++++.-...-++.++....+...... ..+..-.. ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35789999999999999998886321 222344443334445555544444433211 11111111 11
Q ss_pred HHHHHHHh--cCCceEEEeCCC
Q 042336 269 LQHICLSI--TGKKFLLVLDDV 288 (944)
Q Consensus 269 ~~~l~~~l--~~k~~LlVlDdv 288 (944)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 11222333 589999999999
No 432
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.19 E-value=0.064 Score=53.61 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=36.8
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEE---------eCCCCCHHHH--HHHHHHHhhCC
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVS---------VSDPFDEYRV--AKAIIEALEGS 258 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---------vs~~~~~~~~--~~~i~~~l~~~ 258 (944)
..+.+|.++||+|.||||..+.++.+ ....+....-|+ ..-+.++++. .++..++.+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 45678889999999999999999875 223332222222 2333455554 45666666543
No 433
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.17 E-value=0.49 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 434
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.13 E-value=0.24 Score=58.86 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=55.2
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-----NLGELNSLLQHIC 273 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 273 (944)
.-+++-|+|.+|+|||||+.+++.. ....=..++|+...+.+++. .+++++.+.. .....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4578899999999999999776552 22233567899888877743 5666654321 1223344555555
Q ss_pred HHhc-CCceEEEeCCCC
Q 042336 274 LSIT-GKKFLLVLDDVW 289 (944)
Q Consensus 274 ~~l~-~k~~LlVlDdvw 289 (944)
..++ ++.-|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 5443 466799999883
No 435
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.12 E-value=0.31 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|+|..|.|||||.+.+..-
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999763
No 436
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.10 E-value=0.71 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|.|||||++.+..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 437
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.09 E-value=0.83 Score=42.49 Aligned_cols=82 Identities=9% Similarity=0.155 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHhhhhccchhh
Q 042336 2 VDAFVSVVLEQLISVAVEEAKKEVRLVDGVDQEVEKLTSNFRAIQAVIVDAEQRQI-KEESVRLWLDQLKHTSYDMEDVL 80 (944)
Q Consensus 2 a~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~-~~~~~~~wl~~lr~~~yd~ed~l 80 (944)
|+.+.+++++.+.+.+...+.+.......++.-+++|..+++.+.-++++.+.... -+..-+.=++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 45555555555555444478888888888999999999999999999999887532 12222455778888888888888
Q ss_pred HHH
Q 042336 81 DEW 83 (944)
Q Consensus 81 d~~ 83 (944)
+.|
T Consensus 83 ~k~ 85 (147)
T PF05659_consen 83 EKC 85 (147)
T ss_pred HHh
Confidence 876
No 438
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.08 E-value=0.58 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|+|..|.|||||++.+..-
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999753
No 439
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=93.07 E-value=0.24 Score=46.01 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=27.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEe
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSV 238 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 238 (944)
-+.|+|-||+||+++.+.+|.- -....+...+||+.
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvdf 57 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchhh
Confidence 4569999999999999999973 22345567788754
No 440
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.07 E-value=0.69 Score=47.36 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=31.4
Q ss_pred HHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccchhhhh
Q 042336 271 HICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRKETVAR 323 (944)
Q Consensus 271 ~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 323 (944)
.+.+.+-.++-+++||+-... |......+...+.....|..||++|.+.....
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 344566777889999987432 33334445454443334666777777665544
No 441
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.00 E-value=0.054 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 442
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.99 E-value=0.54 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|+|..|.|||||++.+..-
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999763
No 443
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.94 E-value=0.055 Score=54.08 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 444
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.94 E-value=0.065 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999883
No 445
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.94 E-value=0.11 Score=53.10 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=43.7
Q ss_pred HHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHH
Q 042336 183 NTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIE 253 (944)
Q Consensus 183 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 253 (944)
.+++..+... .++..+|+|.|.||+|||||.-.+.....-+++=-.++=|.-|.+++--.++-+-++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 4555555543 346789999999999999999888774433344334445555666665555554444
No 446
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.93 E-value=0.14 Score=50.26 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=32.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688998888888776643 24588999999999999999854
No 447
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.88 E-value=0.27 Score=51.08 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.1
Q ss_pred EEEEeeCCchHHHHHHHHhcC
Q 042336 203 ISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~ 223 (944)
|.++|.+|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 448
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.88 E-value=0.36 Score=49.81 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=52.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccc--cccCceeEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCCCCHH----
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDV--INNFEKRIWVSVSDPF-DEYRVAKAIIEALEGS-------APNLGELN---- 266 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 266 (944)
+.++|.|-.|+|||+|+..+.++... +++-+.++++-+.+.. .+.++...+.+.=... ..+..-..
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999998875321 1234678888887655 4555555554431111 01111111
Q ss_pred -HHHHHHHHHh---cCCceEEEeCCC
Q 042336 267 -SLLQHICLSI---TGKKFLLVLDDV 288 (944)
Q Consensus 267 -~~~~~l~~~l---~~k~~LlVlDdv 288 (944)
...-.+.+++ +++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1112233333 378999999999
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.88 E-value=0.069 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 450
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.82 E-value=0.17 Score=56.64 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=53.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCCCCHH-----
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF-DEYRVAKAIIEALEGS-------APNLGELN----- 266 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 266 (944)
-+.++|.|.+|+|||||+.++.+... +.+-+.++++-+.+.. .+.++...+...=... ..+..-..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 35689999999999999988887422 2245777788776654 4455555554321110 11111111
Q ss_pred HHHHHHHHHh---cCCceEEEeCCC
Q 042336 267 SLLQHICLSI---TGKKFLLVLDDV 288 (944)
Q Consensus 267 ~~~~~l~~~l---~~k~~LlVlDdv 288 (944)
.....+.+++ +++.+|+++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 1122333444 489999999999
No 451
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.81 E-value=0.058 Score=53.11 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 452
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.81 E-value=0.097 Score=50.18 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4569999999999999999999873
No 453
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.81 E-value=2.2 Score=45.69 Aligned_cols=49 Identities=22% Similarity=0.132 Sum_probs=32.9
Q ss_pred eEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH
Q 042336 330 ILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA 379 (944)
Q Consensus 330 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 379 (944)
++++++++.+|+..++.-.+-.+--.. ....+...+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987653332111 1222445666777779998643
No 454
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.78 E-value=0.17 Score=56.14 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=34.5
Q ss_pred CccccchhHHHHHHHHhcc-------CCc---ccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 173 SEVRGRDEEKNTLKTKLLC-------ENS---EEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~-------~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..++|.+..++.+...+.. ... ...-...-+.++|++|+|||++|+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 3589999988887655421 000 0011235688999999999999999986
No 455
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=0.0083 Score=59.90 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=71.2
Q ss_pred hcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCc--ccccCC
Q 042336 579 NQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQ--GVGKLV 656 (944)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~ 656 (944)
+.+.+.+.|++.||. +..+ +...+|+.|++|.||-|.|+.|- .+..|.+|+.|.|+.|. |..+-+ -+.+|+
T Consensus 16 sdl~~vkKLNcwg~~----L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlp 88 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCG----LDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLP 88 (388)
T ss_pred hHHHHhhhhcccCCC----ccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCc
Confidence 445677889999998 5544 33457999999999999998884 57889999999999987 655532 356788
Q ss_pred CCceeecccccc-ccccc-----cccCCCCCCcCCce
Q 042336 657 NLRHLIFDVNFV-EYMPK-----GIERLTCLRTLSEF 687 (944)
Q Consensus 657 ~L~~L~l~~~~~-~~lp~-----~i~~l~~L~~L~~~ 687 (944)
+||.|-|..|.. ..-+. -+.-|++|+.|+..
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 888887743321 11111 14456777777633
No 456
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.72 E-value=0.25 Score=58.05 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=50.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccc-cCceeEEEEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVIN-NFEKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i 251 (944)
.+++|.++.++.+...+... +-+.++|++|+||||+|+.+.+. +.. .|...+++. ....+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~-n~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYP-NPEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEe-CCCCCchHHHHHH
Confidence 46889999888888877532 24559999999999999999873 322 333333332 2334556667777
Q ss_pred HHHhhC
Q 042336 252 IEALEG 257 (944)
Q Consensus 252 ~~~l~~ 257 (944)
..+++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 776654
No 457
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.69 E-value=0.068 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
++.|.|.+|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3679999999999999999873
No 458
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.69 E-value=0.095 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999987766
No 459
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.67 E-value=0.13 Score=47.82 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=27.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD 240 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 240 (944)
.+|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999842 224455555666554
No 460
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.63 E-value=0.4 Score=53.50 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=51.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCCCCHH-----
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF-DEYRVAKAIIEALEGS-------APNLGELN----- 266 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 266 (944)
-+.++|.|.+|+|||||+.++....... +=+.++++-+.+.. .+.++.+.+...=... ..+..-..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3568999999999999999886632211 11356777776554 4555666555431111 01111111
Q ss_pred HHHHHHHHHh---cCCceEEEeCCC
Q 042336 267 SLLQHICLSI---TGKKFLLVLDDV 288 (944)
Q Consensus 267 ~~~~~l~~~l---~~k~~LlVlDdv 288 (944)
...-.+.+++ +++.+||++||+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1122334444 789999999999
No 461
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.63 E-value=0.09 Score=52.48 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.5
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+++|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 462
>PF13479 AAA_24: AAA domain
Probab=92.60 E-value=0.3 Score=49.31 Aligned_cols=20 Identities=45% Similarity=0.453 Sum_probs=17.8
Q ss_pred EEEEEEeeCCchHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFV 220 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v 220 (944)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 45789999999999999877
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.59 E-value=0.24 Score=54.05 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=56.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..+.|.|..|+||||+.+.+.+. +..+...+++. +.++... ........+...... .+.......++..|+..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~evg-~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNKRSLINQREVG-LDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCccceEEccccC-CCCcCHHHHHHHhhccCC
Confidence 67999999999999999988772 33334444443 2222111 000000000000001 111234555667788889
Q ss_pred eEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch
Q 042336 281 FLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 319 (944)
=.|++|.+.+ .+.+.. ++.....|..|+.|.-..
T Consensus 197 d~i~vgEird--~~~~~~---~l~aa~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 197 DVILIGEMRD--LETVEL---ALTAAETGHLVFGTLHTN 230 (343)
T ss_pred CEEEEeCCCC--HHHHHH---HHHHHHcCCcEEEEEcCC
Confidence 9999999953 333333 233334466566555443
No 464
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.53 E-value=0.077 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999873
No 465
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.53 E-value=0.57 Score=48.76 Aligned_cols=102 Identities=11% Similarity=0.126 Sum_probs=50.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc-
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF-DEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT- 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 277 (944)
..+++++|.+|+||||+++.+... ....=..+.+++..... ....-++...+.++.+.....+.+.+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 368999999999999999888663 22211245556554321 11122222222222221122333444443332212
Q ss_pred CCceEEEeCCCCcc--CccChhhhHhhh
Q 042336 278 GKKFLLVLDDVWTE--DYSKWEPFHNCL 303 (944)
Q Consensus 278 ~k~~LlVlDdvw~~--~~~~~~~l~~~l 303 (944)
++.=++++|..-.. +.....++...+
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~ 180 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETM 180 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 24568888987432 223344444443
No 466
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.50 E-value=0.1 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.6
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+..||...|..|.||||+|.+++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 467
>PRK15453 phosphoribulokinase; Provisional
Probab=92.45 E-value=0.58 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.7
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 468
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.45 E-value=0.089 Score=49.32 Aligned_cols=20 Identities=35% Similarity=0.735 Sum_probs=18.3
Q ss_pred EEEEEeeCCchHHHHHHHHh
Q 042336 202 VISMVGMGGIGKTTLAQFVY 221 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~ 221 (944)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 47899999999999998886
No 469
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.42 E-value=0.66 Score=48.01 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=36.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEAL 255 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 255 (944)
-.++.|.|.+|+|||+++.++..+.. ..+=..++|++... +..++...++...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHHh
Confidence 46899999999999999988766322 22123567776655 5667777766543
No 470
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.41 E-value=0.081 Score=50.85 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=18.1
Q ss_pred EEEEeeCCchHHHHHHHHhcC
Q 042336 203 ISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~ 223 (944)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999874
No 471
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.39 E-value=0.028 Score=65.24 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=28.5
Q ss_pred cccceeeecccccccCCCCC-CC-CCCCcCeEEEecCcchhhhcC
Q 042336 883 PQLNSLEIRDCHKLKSLPHQ-IL-GNTTLQMLKIYNCRILEERFD 925 (944)
Q Consensus 883 ~~L~~L~l~~c~~l~~lp~~-~~-~l~~L~~L~l~~c~~l~~~~~ 925 (944)
+.++.|.++.|...+.---. .. .+..+..+.+.+|+.+.....
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 34899999999876532111 11 167788899999988765543
No 472
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.38 E-value=0.18 Score=61.97 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=72.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCc--cccccCceeEEEEeCC-----CCCHH-HHHHHHHHHhhCCCCCCCCHHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDN--DVINNFEKRIWVSVSD-----PFDEY-RVAKAIIEALEGSAPNLGELNSLLQH 271 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~--~~~~~F~~~~wv~vs~-----~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~ 271 (944)
..-+.|+|.+|.||||+.+.+.-.. +....=+..+++.+.. .+.-. .+..-+...+....... .....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~----~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAK----QLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcc----hhhHH
Confidence 3478999999999999998876421 1111123344444331 11111 22222233332222211 12222
Q ss_pred HHHHhcCCceEEEeCCCCccCccCh----hhhHhhhccCCCCcEEEEEccchhhhhcccccceEeCCCCChHHHH
Q 042336 272 ICLSITGKKFLLVLDDVWTEDYSKW----EPFHNCLMNCLHGSKILVTTRKETVARMMESIDILIIKELSELECW 342 (944)
Q Consensus 272 l~~~l~~k~~LlVlDdvw~~~~~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~ 342 (944)
..+.++..++++++|.+.......- ..+...++. -+.+.+|+|+|....-........+.+..+.++.-.
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 2567789999999999854322111 112222222 257899999997655544444445555555555444
No 473
>PHA02774 E1; Provisional
Probab=92.37 E-value=0.42 Score=54.20 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=33.5
Q ss_pred HHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC
Q 042336 181 EKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD 240 (944)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 240 (944)
-+..+..+|.. .++...+.|+|++|.|||.+|..+.+- .. -..+.||+...
T Consensus 420 fl~~lk~~l~~-----~PKknciv~~GPP~TGKS~fa~sL~~~--L~--G~vi~fvN~~s 470 (613)
T PHA02774 420 FLTALKDFLKG-----IPKKNCLVIYGPPDTGKSMFCMSLIKF--LK--GKVISFVNSKS 470 (613)
T ss_pred HHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH--hC--CCEEEEEECcc
Confidence 34555555532 234568999999999999999999872 21 22345666533
No 474
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.34 E-value=0.091 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
++++|+|+.|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999988
No 475
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.32 E-value=0.098 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 476
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.32 E-value=0.16 Score=51.92 Aligned_cols=86 Identities=28% Similarity=0.328 Sum_probs=48.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCC---------------CCC--
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGS---------------APN-- 261 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~---------------~~~-- 261 (944)
.-.++.|.|.+|+|||+|+.++... ..+..=+.++||+..+. .+.+.+.+- .++-+ ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 3468999999999999999886642 12221346778887654 344444432 22210 000
Q ss_pred ---CCCHHHHHHHHHHHhcC-CceEEEeCCC
Q 042336 262 ---LGELNSLLQHICLSITG-KKFLLVLDDV 288 (944)
Q Consensus 262 ---~~~~~~~~~~l~~~l~~-k~~LlVlDdv 288 (944)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23455555655555442 3467777776
No 477
>PRK13949 shikimate kinase; Provisional
Probab=92.26 E-value=0.086 Score=50.93 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-|.|+|++|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 478
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.25 E-value=0.55 Score=54.86 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
++..|.|.+|.||||++..+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 6888999999999999988765
No 479
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.22 E-value=0.18 Score=59.02 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=55.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+. -...+|+..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 46889999998888877432 35889999999999999999874 22334677788655 4446777777777
Q ss_pred HHhhC
Q 042336 253 EALEG 257 (944)
Q Consensus 253 ~~l~~ 257 (944)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 66554
No 480
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.20 E-value=0.69 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999763
No 481
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.20 E-value=0.54 Score=52.12 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=46.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCC-------CCCCCCHHH----
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGS-------APNLGELNS---- 267 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 267 (944)
-..++|.|..|+|||||++.+..... . +..+.+.+.+ .-.+.++.+..+..-... ..+..-...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999887422 1 2222333333 334444554443322111 111111111
Q ss_pred -HHHHHHHHh--cCCceEEEeCCC
Q 042336 268 -LLQHICLSI--TGKKFLLVLDDV 288 (944)
Q Consensus 268 -~~~~l~~~l--~~k~~LlVlDdv 288 (944)
....+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 112233333 689999999999
No 482
>PRK13947 shikimate kinase; Provisional
Probab=92.20 E-value=0.086 Score=51.22 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 483
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.18 E-value=0.01 Score=57.72 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=47.8
Q ss_pred hcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCC
Q 042336 579 NQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNL 658 (944)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 658 (944)
..+....+||++.+. +..+-..++-+..|.-|+++.+.+..+|+..+.+..+..+++..|. .+.+|.+.++++.+
T Consensus 39 ~~~kr~tvld~~s~r----~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNR----LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHP 113 (326)
T ss_pred hccceeeeehhhhhH----HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCc
Confidence 445555666666655 3344444555556666666666666666666666666666655544 55666666666666
Q ss_pred ceeeccc
Q 042336 659 RHLIFDV 665 (944)
Q Consensus 659 ~~L~l~~ 665 (944)
+.+++..
T Consensus 114 k~~e~k~ 120 (326)
T KOG0473|consen 114 KKNEQKK 120 (326)
T ss_pred chhhhcc
Confidence 6666533
No 484
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.16 E-value=0.082 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 485
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.15 E-value=0.07 Score=29.17 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=3.1
Q ss_pred ccEEEecCcc
Q 042336 634 LQTIEIEGCY 643 (944)
Q Consensus 634 L~~L~L~~~~ 643 (944)
|++|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 486
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.14 E-value=0.74 Score=52.12 Aligned_cols=40 Identities=33% Similarity=0.332 Sum_probs=28.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD 240 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 240 (944)
.-.++.|.|.+|+|||||+.++... ....-..++|++..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 4578999999999999999988663 222223577877654
No 487
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.14 E-value=0.55 Score=52.14 Aligned_cols=85 Identities=16% Similarity=0.270 Sum_probs=49.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC-CCHHHHHHHHHHHhhCC-------CCCCCCHHHH---
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP-FDEYRVAKAIIEALEGS-------APNLGELNSL--- 268 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~~--- 268 (944)
-..++|.|..|+|||||++.+.+.. +.+..+++.+.+. ..+.+++.+....=... ..+..-....
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998732 3344566666543 34445555543210000 0111111111
Q ss_pred --HHHHHHHh--cCCceEEEeCCC
Q 042336 269 --LQHICLSI--TGKKFLLVLDDV 288 (944)
Q Consensus 269 --~~~l~~~l--~~k~~LlVlDdv 288 (944)
.-.+.+++ +++++|+++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 11233333 689999999999
No 488
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.08 E-value=0.19 Score=49.54 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=26.7
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCH
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDE 244 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 244 (944)
.|+|+|-||+||||+|...... -...+=..+.=|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCCh
Confidence 5899999999999999885442 11222123444566555554
No 489
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.07 E-value=0.99 Score=48.14 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=35.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC-CHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF-DEYRVAKAI 251 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i 251 (944)
..++|.|..|+|||+|++++.+.. +-+.++++-+.+.. .+.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 478999999999999999999842 33578888887654 445555554
No 490
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.07 E-value=0.66 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.188 Sum_probs=18.7
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999974
No 491
>PRK08149 ATP synthase SpaL; Validated
Probab=92.05 E-value=0.73 Score=51.10 Aligned_cols=85 Identities=12% Similarity=0.249 Sum_probs=49.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCC-------CCCCCCHH-----
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGS-------APNLGELN----- 266 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 266 (944)
-..++|+|..|+|||||++.+++... -+.++...+.. ..++.++..+........ ..+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 35789999999999999999987422 23333444443 334556666555533211 11111111
Q ss_pred HHHHHHHHHh--cCCceEEEeCCC
Q 042336 267 SLLQHICLSI--TGKKFLLVLDDV 288 (944)
Q Consensus 267 ~~~~~l~~~l--~~k~~LlVlDdv 288 (944)
.....+.+++ +++++||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1122223333 699999999999
No 492
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.05 E-value=0.11 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEeeCCchHHHHHHHHhcCc
Q 042336 203 ISMVGMGGIGKTTLAQFVYNDN 224 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~~ 224 (944)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 493
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=0.23 Score=48.95 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=36.5
Q ss_pred ccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 174 EVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
++-|.+-.++++.+...-+-.. +-+.++-|.++|++|.|||.||++|+++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4668888888877765422110 2245677889999999999999999995
No 494
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=91.97 E-value=0.28 Score=56.44 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=37.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..++|....++++.+.+..-.. ...-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3589999988888887754322 2346889999999999999999874
No 495
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.95 E-value=1.8 Score=47.22 Aligned_cols=41 Identities=41% Similarity=0.392 Sum_probs=28.9
Q ss_pred HHHHHHhccCCcc---cCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 183 NTLKTKLLCENSE---EQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 183 ~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
++|++.|...... ....+.||-.+|.-|.||||-|.++++.
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~ 123 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKY 123 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHH
Confidence 4556666531110 1345789999999999999999888773
No 496
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.94 E-value=0.29 Score=50.53 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=46.7
Q ss_pred EEEEEEeeCCchHHHHH-HHHhcCccccccCcee-EEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCCCCHHH---
Q 042336 201 QVISMVGMGGIGKTTLA-QFVYNDNDVINNFEKR-IWVSVSDPF-DEYRVAKAIIEALEGS-------APNLGELNS--- 267 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 267 (944)
+.++|.|.+|+|||+|| ..+.+. . +-+.+ +++-+.+.. .+.++.+.+.+.=... ..+..-...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 46899999999999996 666652 1 22344 666676654 3455555554321110 111111111
Q ss_pred --HHHHHHHHh--cCCceEEEeCCC
Q 042336 268 --LLQHICLSI--TGKKFLLVLDDV 288 (944)
Q Consensus 268 --~~~~l~~~l--~~k~~LlVlDdv 288 (944)
..-.+.+++ +++..|||+||+
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 111222222 689999999999
No 497
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=91.93 E-value=0.3 Score=56.17 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=36.6
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.++|....++++.+.+..-.. ...-|.|.|..|+||+++|+.+++.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 589999988888887753322 2346889999999999999999874
No 498
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.90 E-value=0.22 Score=53.05 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=34.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
.+++...|.||+||||+|.+..- ........++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988544 22223344777777766666665544
No 499
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.89 E-value=0.12 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=21.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..++.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999883
No 500
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.88 E-value=0.46 Score=50.76 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=47.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCC-------CCCCCCHH-----H
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGS-------APNLGELN-----S 267 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 267 (944)
..++|+|..|.|||||.+.+..... -+..+..-+.. .-++.++.......-... ..+..... .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999999987422 13334444443 334555555444432111 11111111 1
Q ss_pred HHHHHHHHh--cCCceEEEeCCC
Q 042336 268 LLQHICLSI--TGKKFLLVLDDV 288 (944)
Q Consensus 268 ~~~~l~~~l--~~k~~LlVlDdv 288 (944)
..-.+.+++ +++.+|+++||+
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccc
Confidence 111222333 689999999998
Done!