Query 042336
Match_columns 944
No_of_seqs 495 out of 4485
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 08:43:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-48 4.6E-53 454.5 25.4 318 173-513 128-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 4E-39 1.4E-43 375.2 19.6 286 174-505 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-36 5.9E-41 392.9 26.3 311 170-511 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.4E-34 1.9E-38 337.5 26.6 305 172-509 123-450 (591)
5 3rgz_A Protein brassinosteroid 99.9 1.8E-26 6.1E-31 281.0 13.6 93 851-943 648-767 (768)
6 4ecn_A Leucine-rich repeat pro 99.9 1.8E-23 6.3E-28 252.0 20.1 343 530-920 447-840 (876)
7 4eco_A Uncharacterized protein 99.9 9.4E-24 3.2E-28 250.9 15.7 341 530-920 205-600 (636)
8 4ecn_A Leucine-rich repeat pro 99.9 2.7E-23 9.2E-28 250.6 18.3 331 546-919 440-818 (876)
9 3rgz_A Protein brassinosteroid 99.9 2.4E-23 8.1E-28 253.5 14.4 344 529-919 198-550 (768)
10 4eco_A Uncharacterized protein 99.9 3.2E-23 1.1E-27 246.3 14.1 328 546-919 198-578 (636)
11 3vq2_A TLR4, TOLL-like recepto 99.9 3.9E-22 1.3E-26 237.3 23.3 146 529-683 30-181 (606)
12 2z7x_B TOLL-like receptor 1, v 99.9 3.4E-22 1.2E-26 233.0 21.7 132 775-919 342-480 (520)
13 4fmz_A Internalin; leucine ric 99.9 2.8E-22 9.6E-27 220.6 16.3 302 531-919 44-345 (347)
14 3v47_A TOLL-like receptor 5B a 99.9 1.3E-22 4.5E-27 232.4 14.2 362 529-919 28-407 (455)
15 3t6q_A CD180 antigen; protein- 99.9 4E-22 1.4E-26 237.1 17.6 361 529-920 31-462 (606)
16 1o6v_A Internalin A; bacterial 99.9 1.1E-21 3.7E-26 224.8 20.3 324 531-920 46-388 (466)
17 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-21 9.8E-26 227.1 22.8 133 534-681 34-169 (562)
18 2z63_A TOLL-like receptor 4, v 99.9 5.8E-22 2E-26 234.1 17.0 144 529-681 26-175 (570)
19 1ziw_A TOLL-like receptor 3; i 99.9 2.3E-21 7.8E-26 233.9 21.9 169 529-709 23-197 (680)
20 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-21 4.1E-26 233.1 18.9 359 536-919 16-436 (606)
21 2id5_A Lingo-1, leucine rich r 99.9 4.4E-21 1.5E-25 220.9 21.7 308 540-895 20-332 (477)
22 3o6n_A APL1; leucine-rich repe 99.9 2.4E-21 8.4E-26 216.6 18.4 305 552-920 43-352 (390)
23 3t6q_A CD180 antigen; protein- 99.9 4.1E-21 1.4E-25 228.5 20.5 134 777-919 421-559 (606)
24 2id5_A Lingo-1, leucine rich r 99.9 3.2E-21 1.1E-25 222.0 18.5 294 582-920 32-333 (477)
25 4fmz_A Internalin; leucine ric 99.9 4.3E-21 1.5E-25 211.1 18.1 282 529-895 64-345 (347)
26 2z81_A CD282 antigen, TOLL-lik 99.9 3.4E-21 1.2E-25 226.3 17.7 377 530-919 25-509 (549)
27 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-20 4.3E-25 232.0 23.0 149 529-685 22-180 (844)
28 2z63_A TOLL-like receptor 4, v 99.9 5.2E-21 1.8E-25 225.9 18.6 132 543-685 19-155 (570)
29 3oja_B Anopheles plasmodium-re 99.9 5.1E-21 1.7E-25 226.1 18.1 305 552-920 49-358 (597)
30 4fcg_A Uncharacterized protein 99.9 5.8E-21 2E-25 207.2 16.8 233 579-918 78-312 (328)
31 1o6v_A Internalin A; bacterial 99.8 1.1E-20 3.8E-25 216.4 19.9 317 552-919 44-365 (466)
32 3j0a_A TOLL-like receptor 5; m 99.8 4.5E-20 1.5E-24 227.0 25.2 160 538-711 11-178 (844)
33 3bz5_A Internalin-J, INLJ; leu 99.8 2.5E-20 8.7E-25 211.5 20.7 306 549-919 37-351 (457)
34 3bz5_A Internalin-J, INLJ; leu 99.8 3.7E-20 1.3E-24 210.1 21.5 278 578-919 38-330 (457)
35 3v47_A TOLL-like receptor 5B a 99.8 6E-21 2E-25 218.5 13.9 332 530-900 53-412 (455)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5E-20 1.7E-24 216.5 20.1 120 552-685 29-152 (562)
37 2z81_A CD282 antigen, TOLL-lik 99.8 3.3E-20 1.1E-24 217.9 18.3 348 541-919 15-463 (549)
38 3o6n_A APL1; leucine-rich repe 99.8 8E-21 2.7E-25 212.5 12.2 284 580-919 43-330 (390)
39 2z7x_B TOLL-like receptor 1, v 99.8 3.8E-20 1.3E-24 215.6 16.8 137 534-685 3-144 (520)
40 3oja_B Anopheles plasmodium-re 99.8 1.8E-20 6.2E-25 221.4 11.5 284 580-919 49-336 (597)
41 4fcg_A Uncharacterized protein 99.8 7.5E-20 2.6E-24 198.5 13.4 219 553-835 80-309 (328)
42 1ogq_A PGIP-2, polygalacturona 99.8 4.6E-20 1.6E-24 199.0 10.7 226 578-838 72-302 (313)
43 1ziw_A TOLL-like receptor 3; i 99.8 8.9E-19 3E-23 211.2 20.4 348 533-921 250-623 (680)
44 2ft3_A Biglycan; proteoglycan, 99.8 1E-18 3.5E-23 190.6 18.1 270 554-918 54-331 (332)
45 1xku_A Decorin; proteoglycan, 99.8 7.5E-19 2.6E-23 191.5 16.4 117 555-685 32-151 (330)
46 1ogq_A PGIP-2, polygalacturona 99.8 1E-19 3.5E-24 196.2 9.2 248 582-920 50-304 (313)
47 2ft3_A Biglycan; proteoglycan, 99.8 5.3E-19 1.8E-23 192.8 14.9 127 782-920 173-307 (332)
48 1xku_A Decorin; proteoglycan, 99.8 3.4E-18 1.2E-22 186.3 18.3 289 533-917 33-329 (330)
49 4g8a_A TOLL-like receptor 4; l 99.8 5.4E-18 1.8E-22 203.0 21.4 135 529-672 50-189 (635)
50 1jl5_A Outer protein YOPM; leu 99.7 2.4E-17 8.4E-22 186.8 18.8 304 529-919 89-408 (454)
51 4g8a_A TOLL-like receptor 4; l 99.7 3.2E-17 1.1E-21 196.3 19.7 132 543-685 43-179 (635)
52 1z7x_W Ribonuclease inhibitor; 99.7 4.6E-20 1.6E-24 211.6 -5.3 357 531-919 3-410 (461)
53 1jl5_A Outer protein YOPM; leu 99.7 2.1E-17 7.1E-22 187.3 14.5 336 530-920 10-370 (454)
54 2z80_A TOLL-like receptor 2, v 99.7 3.5E-17 1.2E-21 180.1 13.2 251 582-919 52-313 (353)
55 2z80_A TOLL-like receptor 2, v 99.7 3.8E-17 1.3E-21 179.8 12.7 260 540-838 40-312 (353)
56 2z66_A Variable lymphocyte rec 99.7 3E-17 1E-21 176.7 11.6 85 582-671 28-116 (306)
57 3zyj_A Leucine-rich repeat-con 99.7 1.9E-16 6.5E-21 179.7 18.6 110 776-919 180-291 (440)
58 3g06_A SSPH2 (leucine-rich rep 99.7 2.4E-16 8.2E-21 184.0 19.4 237 582-920 61-297 (622)
59 3zyi_A Leucine-rich repeat-con 99.7 2.1E-16 7.1E-21 180.1 18.1 109 777-919 192-302 (452)
60 3o53_A Protein LRIM1, AGAP0063 99.7 4.6E-17 1.6E-21 175.9 9.9 221 574-838 26-248 (317)
61 3zyi_A Leucine-rich repeat-con 99.7 3.1E-16 1E-20 178.7 15.9 197 582-838 75-277 (452)
62 3zyj_A Leucine-rich repeat-con 99.7 4.9E-16 1.7E-20 176.3 17.1 197 582-838 64-266 (440)
63 2z66_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 172.1 11.2 242 536-838 12-259 (306)
64 2qen_A Walker-type ATPase; unk 99.7 4.1E-15 1.4E-19 163.5 22.8 294 170-505 9-349 (350)
65 1wwl_A Monocyte differentiatio 99.7 7.2E-17 2.5E-21 174.0 8.1 245 579-919 40-308 (312)
66 3qfl_A MLA10; coiled-coil, (CC 99.7 1.1E-16 3.9E-21 141.0 7.0 81 4-88 1-83 (115)
67 1w5s_A Origin recognition comp 99.6 2.1E-15 7.1E-20 169.9 18.9 297 172-488 21-372 (412)
68 3g06_A SSPH2 (leucine-rich rep 99.6 1.4E-15 4.9E-20 177.4 17.8 257 533-897 42-298 (622)
69 3ogk_B Coronatine-insensitive 99.6 4.4E-17 1.5E-21 193.1 4.2 345 551-919 161-525 (592)
70 1ozn_A Reticulon 4 receptor; N 99.6 5.5E-16 1.9E-20 164.9 12.0 200 581-838 31-236 (285)
71 2fna_A Conserved hypothetical 99.6 5.2E-14 1.8E-18 155.1 26.2 293 171-504 11-356 (357)
72 3oja_A Leucine-rich immune mol 99.6 1.3E-15 4.3E-20 174.5 12.7 84 580-673 32-116 (487)
73 3o53_A Protein LRIM1, AGAP0063 99.6 5.4E-17 1.9E-21 175.4 0.6 93 583-685 11-105 (317)
74 1ozn_A Reticulon 4 receptor; N 99.6 1.5E-15 5E-20 161.6 11.5 218 535-817 15-238 (285)
75 3ogk_B Coronatine-insensitive 99.6 2.4E-16 8.3E-21 186.7 4.9 354 532-919 113-500 (592)
76 1h6u_A Internalin H; cell adhe 99.6 3.4E-15 1.2E-19 160.3 13.4 190 580-838 39-228 (308)
77 3oja_A Leucine-rich immune mol 99.6 1.8E-15 6.2E-20 173.1 11.4 215 552-838 32-248 (487)
78 1z7x_W Ribonuclease inhibitor; 99.6 6.8E-17 2.3E-21 185.1 -1.9 336 553-919 2-382 (461)
79 1wwl_A Monocyte differentiatio 99.6 6.6E-15 2.2E-19 158.6 10.4 202 580-838 93-307 (312)
80 2o6q_A Variable lymphocyte rec 99.5 5.3E-14 1.8E-18 148.1 16.7 195 583-838 17-216 (270)
81 3rfs_A Internalin B, repeat mo 99.5 3E-14 1E-18 150.0 14.5 87 579-672 38-125 (272)
82 2p1m_B Transport inhibitor res 99.5 4.5E-16 1.5E-20 184.5 -0.0 366 532-919 106-518 (594)
83 2z62_A TOLL-like receptor 4, v 99.5 2.4E-14 8.3E-19 151.3 13.1 123 554-685 28-155 (276)
84 1p9a_G Platelet glycoprotein I 99.5 2.5E-14 8.5E-19 151.9 12.7 123 550-685 6-130 (290)
85 1h6u_A Internalin H; cell adhe 99.5 1.9E-14 6.5E-19 154.4 10.6 193 551-817 38-230 (308)
86 4glp_A Monocyte differentiatio 99.5 7.3E-14 2.5E-18 150.3 15.2 230 552-838 62-305 (310)
87 1p9a_G Platelet glycoprotein I 99.5 1E-13 3.6E-18 147.1 16.0 107 780-919 99-207 (290)
88 2z62_A TOLL-like receptor 4, v 99.5 2.8E-14 9.7E-19 150.8 11.5 202 582-838 28-235 (276)
89 2xwt_C Thyrotropin receptor; s 99.5 3.6E-14 1.2E-18 146.4 11.8 87 583-673 32-122 (239)
90 2ast_B S-phase kinase-associat 99.5 1.2E-14 4E-19 158.8 5.8 199 583-838 48-258 (336)
91 3rfs_A Internalin B, repeat mo 99.5 1.8E-13 6.3E-18 144.0 14.3 123 550-684 37-162 (272)
92 2ca6_A RAN GTPase-activating p 99.5 3.4E-15 1.1E-19 166.4 0.7 245 546-838 24-314 (386)
93 2o6q_A Variable lymphocyte rec 99.5 5.7E-13 1.9E-17 140.1 17.3 171 610-837 17-191 (270)
94 2xwt_C Thyrotropin receptor; s 99.5 3.8E-13 1.3E-17 138.7 14.9 84 598-684 23-110 (239)
95 1h6t_A Internalin B; cell adhe 99.4 2.7E-13 9.2E-18 144.0 12.3 98 579-685 43-140 (291)
96 2qby_B CDC6 homolog 3, cell di 99.4 4.6E-12 1.6E-16 140.9 22.9 296 173-489 20-341 (384)
97 4ay9_X Follicle-stimulating ho 99.4 1.3E-12 4.3E-17 143.1 17.6 236 585-892 12-255 (350)
98 2ast_B S-phase kinase-associat 99.4 7.8E-14 2.7E-18 152.2 6.6 201 582-837 70-282 (336)
99 1m9s_A Internalin B; cell inva 99.4 6.8E-13 2.3E-17 154.7 14.7 82 581-670 42-123 (605)
100 2p1m_B Transport inhibitor res 99.4 7.6E-15 2.6E-19 174.0 -2.7 330 552-918 182-542 (594)
101 4glp_A Monocyte differentiatio 99.4 3.4E-13 1.2E-17 145.1 10.5 228 531-817 64-307 (310)
102 2ca6_A RAN GTPase-activating p 99.4 7.3E-15 2.5E-19 163.6 -2.7 217 574-838 24-285 (386)
103 3m19_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 134.8 15.2 172 582-838 14-190 (251)
104 2v1u_A Cell division control p 99.4 1.2E-11 4.1E-16 137.8 22.7 295 173-488 19-352 (387)
105 1fnn_A CDC6P, cell division co 99.4 2.4E-11 8.1E-16 135.4 24.1 298 173-489 17-353 (389)
106 1m9s_A Internalin B; cell inva 99.4 7.2E-13 2.5E-17 154.5 9.6 187 583-838 22-208 (605)
107 1h6t_A Internalin B; cell adhe 99.4 2.3E-12 7.9E-17 136.8 11.7 119 551-684 43-161 (291)
108 1xeu_A Internalin C; cellular 99.3 9.9E-13 3.4E-17 137.3 8.1 167 580-838 17-183 (263)
109 3cvr_A Invasion plasmid antige 99.3 2.4E-12 8.3E-17 148.2 11.4 87 583-685 60-146 (571)
110 4ay9_X Follicle-stimulating ho 99.3 4.2E-12 1.5E-16 138.9 12.8 217 582-864 30-254 (350)
111 3goz_A Leucine-rich repeat-con 99.3 6.4E-13 2.2E-17 146.3 6.0 242 546-838 14-295 (362)
112 2qby_A CDC6 homolog 1, cell di 99.3 7.9E-11 2.7E-15 131.0 22.6 294 172-487 19-348 (386)
113 4ezg_A Putative uncharacterize 99.3 5.8E-12 2E-16 125.4 11.2 83 580-668 42-124 (197)
114 4ezg_A Putative uncharacterize 99.3 7.1E-12 2.4E-16 124.7 11.8 142 531-685 44-187 (197)
115 3goz_A Leucine-rich repeat-con 99.3 5.5E-13 1.9E-17 146.8 2.0 247 573-871 13-296 (362)
116 3cvr_A Invasion plasmid antige 99.3 6.4E-12 2.2E-16 144.7 10.8 188 554-821 59-247 (571)
117 4b8c_D Glucose-repressible alc 99.3 1.9E-12 6.6E-17 155.0 6.7 158 531-697 173-330 (727)
118 3m19_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 128.1 11.6 140 535-685 18-161 (251)
119 1njg_A DNA polymerase III subu 99.2 8.5E-11 2.9E-15 121.6 15.6 196 173-385 23-230 (250)
120 2ell_A Acidic leucine-rich nuc 99.2 1.3E-11 4.6E-16 119.2 8.0 131 531-672 24-163 (168)
121 1dce_A Protein (RAB geranylger 99.2 7.3E-13 2.5E-17 153.6 -1.3 192 579-833 346-566 (567)
122 3e6j_A Variable lymphocyte rec 99.2 2E-11 6.9E-16 124.5 9.5 139 536-685 24-165 (229)
123 1xeu_A Internalin C; cellular 99.2 2.7E-11 9.1E-16 126.4 10.2 98 578-685 37-134 (263)
124 2v9t_B SLIT homolog 2 protein 99.2 3.8E-11 1.3E-15 121.6 10.0 137 538-685 18-158 (220)
125 2v9t_B SLIT homolog 2 protein 99.2 7.3E-11 2.5E-15 119.5 12.1 93 585-684 14-109 (220)
126 2ell_A Acidic leucine-rich nuc 99.2 1.3E-11 4.5E-16 119.3 5.7 126 551-685 21-153 (168)
127 2chg_A Replication factor C sm 99.2 3.8E-10 1.3E-14 114.8 16.3 185 173-383 17-204 (226)
128 1a9n_A U2A', U2A'; complex (nu 99.2 1.7E-11 5.7E-16 119.5 5.6 126 549-685 14-146 (176)
129 2v70_A SLIT-2, SLIT homolog 2 99.2 9.7E-11 3.3E-15 118.5 11.3 93 585-684 14-110 (220)
130 2je0_A Acidic leucine-rich nuc 99.2 8.9E-12 3.1E-16 117.8 3.4 124 553-685 16-146 (149)
131 2o6s_A Variable lymphocyte rec 99.1 5.9E-11 2E-15 119.3 8.8 123 554-685 28-154 (208)
132 2v70_A SLIT-2, SLIT homolog 2 99.1 1.3E-10 4.3E-15 117.7 10.8 141 535-685 15-159 (220)
133 2xot_A Amphoterin-induced prot 99.1 8.6E-11 2.9E-15 129.0 9.3 173 585-815 21-200 (361)
134 2o6s_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 113.7 11.7 129 530-667 27-159 (208)
135 3e6j_A Variable lymphocyte rec 99.1 2.3E-10 7.7E-15 116.7 9.6 99 582-685 40-141 (229)
136 2je0_A Acidic leucine-rich nuc 99.1 4.8E-11 1.7E-15 112.7 4.2 101 579-685 14-119 (149)
137 1dce_A Protein (RAB geranylger 99.0 2.1E-10 7.1E-15 133.0 8.2 118 555-684 442-565 (567)
138 1hqc_A RUVB; extended AAA-ATPa 99.0 1.2E-09 4.1E-14 118.1 12.8 267 173-486 12-324 (324)
139 4b8c_D Glucose-repressible alc 99.0 1.8E-10 6.1E-15 138.0 6.1 117 546-672 216-332 (727)
140 1a9n_A U2A', U2A'; complex (nu 99.0 2.3E-10 8E-15 111.3 5.5 131 529-670 17-154 (176)
141 2xot_A Amphoterin-induced prot 99.0 5.5E-10 1.9E-14 122.6 8.7 140 535-685 22-169 (361)
142 1ds9_A Outer arm dynein; leuci 99.0 1.9E-11 6.6E-16 121.7 -4.0 115 545-671 39-155 (198)
143 1sxj_B Activator 1 37 kDa subu 98.9 3.6E-09 1.2E-13 114.3 13.1 184 173-382 21-209 (323)
144 1ds9_A Outer arm dynein; leuci 98.9 2.4E-11 8.2E-16 121.0 -4.3 105 574-685 40-146 (198)
145 1w8a_A SLIT protein; signaling 98.9 9.5E-10 3.2E-14 108.6 7.2 126 535-669 12-139 (192)
146 2wfh_A SLIT homolog 2 protein 98.9 2.7E-09 9.2E-14 105.3 9.1 97 583-684 32-131 (193)
147 1w8a_A SLIT protein; signaling 98.9 2.6E-09 9E-14 105.4 8.0 83 583-670 30-116 (192)
148 2o6r_A Variable lymphocyte rec 98.9 3.2E-09 1.1E-13 103.4 7.9 107 554-669 28-137 (177)
149 3sb4_A Hypothetical leucine ri 98.9 1.5E-08 5E-13 109.7 13.7 286 553-913 24-327 (329)
150 2wfh_A SLIT homolog 2 protein 98.8 5.1E-09 1.7E-13 103.3 9.0 94 585-685 13-108 (193)
151 3sb4_A Hypothetical leucine ri 98.8 4.9E-09 1.7E-13 113.4 9.4 268 580-919 23-309 (329)
152 2r9u_A Variable lymphocyte rec 98.8 7.2E-09 2.5E-13 100.2 8.1 87 582-673 33-122 (174)
153 1iqp_A RFCS; clamp loader, ext 98.8 2.3E-08 7.8E-13 108.1 12.2 186 173-385 25-214 (327)
154 3g39_A Variable lymphocyte rec 98.8 1E-08 3.4E-13 98.9 8.1 94 585-685 12-108 (170)
155 2r9u_A Variable lymphocyte rec 98.8 9.2E-09 3.1E-13 99.5 7.1 94 585-685 15-111 (174)
156 2o6r_A Variable lymphocyte rec 98.7 2.1E-08 7.1E-13 97.5 9.1 100 581-685 27-130 (177)
157 3te6_A Regulatory protein SIR3 98.7 1.6E-07 5.5E-12 98.6 15.9 172 174-350 21-212 (318)
158 1jr3_A DNA polymerase III subu 98.6 2.5E-07 8.5E-12 102.0 14.6 195 173-383 16-221 (373)
159 3g39_A Variable lymphocyte rec 98.6 5.8E-08 2E-12 93.5 8.2 87 582-673 30-119 (170)
160 2chq_A Replication factor C sm 98.6 2.5E-07 8.4E-12 99.5 13.3 181 173-382 17-203 (319)
161 4fdw_A Leucine rich hypothetic 98.5 3.3E-06 1.1E-10 93.2 18.6 272 580-935 111-394 (401)
162 3bos_A Putative DNA replicatio 98.4 2.6E-07 9E-12 94.8 8.2 172 174-382 29-216 (242)
163 4fdw_A Leucine rich hypothetic 98.4 6.2E-06 2.1E-10 91.0 19.5 98 578-685 132-232 (401)
164 1jbk_A CLPB protein; beta barr 98.4 6.2E-07 2.1E-11 88.3 10.1 151 173-345 22-194 (195)
165 1sxj_D Activator 1 41 kDa subu 98.4 2.2E-06 7.4E-11 93.6 14.7 194 173-382 37-234 (353)
166 3pfi_A Holliday junction ATP-d 98.4 3.8E-06 1.3E-10 90.9 16.1 177 173-382 29-226 (338)
167 2ifg_A High affinity nerve gro 98.4 3.7E-07 1.3E-11 99.4 8.0 87 578-669 27-116 (347)
168 2ifg_A High affinity nerve gro 98.3 7.6E-07 2.6E-11 96.9 7.5 93 587-685 13-109 (347)
169 4fs7_A Uncharacterized protein 98.3 2.9E-05 9.9E-10 85.9 20.4 308 548-917 65-376 (394)
170 2z4s_A Chromosomal replication 98.2 5E-06 1.7E-10 92.8 12.5 160 200-380 130-303 (440)
171 3uk6_A RUVB-like 2; hexameric 98.2 2.3E-05 7.8E-10 85.9 16.7 198 173-382 44-302 (368)
172 3pvs_A Replication-associated 98.2 2E-05 7E-10 87.6 15.9 178 173-382 26-214 (447)
173 1sxj_A Activator 1 95 kDa subu 98.1 1.2E-05 4.2E-10 91.9 13.4 196 173-382 39-252 (516)
174 3un9_A NLR family member X1; l 98.1 1E-06 3.6E-11 96.2 4.2 137 532-669 102-252 (372)
175 3u61_B DNA polymerase accessor 98.1 1.1E-05 3.9E-10 86.6 12.2 179 173-381 26-214 (324)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3.3E-05 1.1E-09 80.1 14.7 187 173-382 6-221 (262)
177 1a5t_A Delta prime, HOLB; zinc 98.1 5.7E-05 1.9E-09 81.2 17.0 173 179-383 8-205 (334)
178 3h4m_A Proteasome-activating n 98.1 2.2E-05 7.5E-10 82.6 13.4 183 173-381 17-229 (285)
179 3un9_A NLR family member X1; l 98.1 7.8E-07 2.7E-11 97.2 2.0 146 532-685 73-245 (372)
180 1sxj_E Activator 1 40 kDa subu 98.1 3E-05 1E-09 84.4 14.3 196 173-383 14-237 (354)
181 1sxj_C Activator 1 40 kDa subu 98.0 5.4E-05 1.9E-09 81.7 15.1 183 173-381 25-210 (340)
182 2ra8_A Uncharacterized protein 98.0 5E-07 1.7E-11 97.8 -1.2 141 775-919 166-319 (362)
183 3syl_A Protein CBBX; photosynt 98.0 4.3E-05 1.5E-09 81.4 13.9 161 174-350 32-218 (309)
184 1l8q_A Chromosomal replication 98.0 8.6E-05 2.9E-09 79.6 16.2 155 200-378 37-203 (324)
185 1d2n_A N-ethylmaleimide-sensit 98.0 6.4E-05 2.2E-09 78.3 14.7 171 174-375 34-229 (272)
186 1io0_A Tropomodulin; LRR prote 98.0 4.2E-06 1.4E-10 81.5 4.9 122 547-669 29-164 (185)
187 2p65_A Hypothetical protein PF 98.0 1.1E-05 3.9E-10 78.5 7.6 45 173-223 22-66 (187)
188 2ra8_A Uncharacterized protein 98.0 9.9E-06 3.4E-10 87.6 7.5 64 578-643 135-204 (362)
189 3eie_A Vacuolar protein sortin 97.9 0.00012 3.9E-09 78.4 15.6 185 173-383 18-228 (322)
190 3n70_A Transport activator; si 97.9 1.2E-05 4.2E-10 74.6 6.3 114 174-318 2-115 (145)
191 3d8b_A Fidgetin-like protein 1 97.9 8.1E-05 2.8E-09 80.7 13.0 187 173-384 84-296 (357)
192 4fs7_A Uncharacterized protein 97.9 0.0002 6.7E-09 79.2 16.2 314 532-912 72-393 (394)
193 2qp9_X Vacuolar protein sortin 97.8 0.00017 5.9E-09 78.0 14.7 185 173-382 51-260 (355)
194 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00049 1.7E-08 73.2 17.8 187 173-383 12-223 (322)
195 3ec2_A DNA replication protein 97.8 3.3E-05 1.1E-09 74.8 7.4 121 178-318 19-142 (180)
196 2w58_A DNAI, primosome compone 97.8 1.9E-05 6.5E-10 78.2 5.7 118 181-318 37-158 (202)
197 3b9p_A CG5977-PA, isoform A; A 97.8 0.00037 1.3E-08 73.5 15.7 185 173-382 21-232 (297)
198 2gno_A DNA polymerase III, gam 97.7 0.00016 5.6E-09 75.9 12.3 149 177-349 1-152 (305)
199 3rw6_A Nuclear RNA export fact 97.7 2.9E-05 9.8E-10 79.4 6.1 83 578-662 166-257 (267)
200 1qvr_A CLPB protein; coiled co 97.7 6.3E-05 2.2E-09 91.6 9.4 154 173-348 170-344 (854)
201 3vfd_A Spastin; ATPase, microt 97.7 0.00046 1.6E-08 75.9 15.4 186 173-382 115-325 (389)
202 3co5_A Putative two-component 97.6 3.5E-05 1.2E-09 71.3 4.3 111 173-318 4-115 (143)
203 4gt6_A Cell surface protein; l 97.6 0.0031 1E-07 69.5 20.2 108 549-665 58-169 (394)
204 3pxg_A Negative regulator of g 97.6 0.00013 4.4E-09 82.1 8.8 145 173-349 180-338 (468)
205 2zan_A Vacuolar protein sortin 97.6 0.0012 4.1E-08 73.6 16.6 187 173-382 134-344 (444)
206 4fcw_A Chaperone protein CLPB; 97.5 0.00032 1.1E-08 74.7 11.2 135 174-318 18-169 (311)
207 3cf0_A Transitional endoplasmi 97.5 0.0016 5.3E-08 68.7 16.1 158 173-350 15-200 (301)
208 1ofh_A ATP-dependent HSL prote 97.4 0.0012 4E-08 70.1 13.8 155 173-347 15-213 (310)
209 1in4_A RUVB, holliday junction 97.4 0.0012 4E-08 70.8 13.5 177 173-382 25-222 (334)
210 3hu3_A Transitional endoplasmi 97.4 0.0013 4.4E-08 73.9 14.3 185 173-382 204-414 (489)
211 3e4g_A ATP synthase subunit S, 97.4 2.5E-05 8.6E-10 73.8 0.2 92 804-922 61-154 (176)
212 2c9o_A RUVB-like 1; hexameric 97.4 0.00059 2E-08 76.6 11.3 97 281-382 297-409 (456)
213 4gt6_A Cell surface protein; l 97.4 0.00092 3.1E-08 73.7 12.8 108 547-664 80-190 (394)
214 3rw6_A Nuclear RNA export fact 97.4 3.9E-05 1.3E-09 78.4 1.1 79 606-686 167-258 (267)
215 2bjv_A PSP operon transcriptio 97.3 0.00032 1.1E-08 72.6 7.7 131 174-318 7-150 (265)
216 1io0_A Tropomodulin; LRR prote 97.3 0.00014 4.8E-09 70.6 4.6 113 531-643 36-162 (185)
217 2kjq_A DNAA-related protein; s 97.3 0.00012 4.2E-09 67.9 3.9 86 201-318 37-124 (149)
218 4b4t_J 26S protease regulatory 97.3 0.0023 7.9E-08 68.8 14.0 178 173-376 148-354 (405)
219 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0013 4.5E-08 79.2 13.4 157 173-349 186-362 (758)
220 3e4g_A ATP synthase subunit S, 97.3 0.00024 8.2E-09 67.1 5.4 88 552-647 59-154 (176)
221 1ojl_A Transcriptional regulat 97.3 0.00038 1.3E-08 73.4 7.5 47 173-223 2-48 (304)
222 1lv7_A FTSH; alpha/beta domain 97.3 0.0051 1.8E-07 63.0 16.0 183 173-380 12-222 (257)
223 4b4t_K 26S protease regulatory 97.3 0.0016 5.4E-08 71.2 12.3 51 173-223 172-229 (428)
224 3pxi_A Negative regulator of g 97.2 0.0016 5.4E-08 78.4 12.2 156 173-349 491-675 (758)
225 4b4t_L 26S protease subunit RP 97.1 0.005 1.7E-07 67.4 14.6 178 173-376 181-387 (437)
226 3pxi_A Negative regulator of g 97.1 0.00077 2.6E-08 81.1 8.5 149 173-349 180-338 (758)
227 4b4t_H 26S protease regulatory 97.0 0.0061 2.1E-07 66.5 13.5 176 174-375 210-414 (467)
228 4b4t_M 26S protease regulatory 97.0 0.0026 9E-08 69.5 10.7 177 173-375 181-386 (434)
229 2ce7_A Cell division protein F 96.9 0.0054 1.9E-07 68.2 12.9 179 173-376 16-221 (476)
230 4b4t_I 26S protease regulatory 96.9 0.0087 3E-07 64.5 13.3 177 173-375 182-387 (437)
231 2qgz_A Helicase loader, putati 96.8 0.00077 2.6E-08 71.1 4.7 55 180-239 135-190 (308)
232 2r44_A Uncharacterized protein 96.7 0.0021 7.1E-08 68.9 7.4 152 173-351 27-200 (331)
233 4h09_A Hypothetical leucine ri 96.7 0.025 8.5E-07 61.7 15.8 56 777-835 236-294 (379)
234 2r62_A Cell division protease 96.7 0.00066 2.3E-08 70.3 3.0 157 173-349 11-196 (268)
235 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.00088 3E-08 69.4 3.4 68 200-289 123-192 (331)
236 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0035 1.2E-07 75.5 8.3 133 173-318 458-607 (758)
237 1qvr_A CLPB protein; coiled co 96.5 0.0051 1.8E-07 74.8 9.3 135 174-318 559-710 (854)
238 3t15_A Ribulose bisphosphate c 96.4 0.035 1.2E-06 57.9 14.1 25 199-223 35-59 (293)
239 3m6a_A ATP-dependent protease 96.4 0.0064 2.2E-07 69.5 9.0 50 173-222 81-130 (543)
240 2cvh_A DNA repair and recombin 96.3 0.01 3.6E-07 59.0 9.1 84 200-289 20-115 (220)
241 1jr3_D DNA polymerase III, del 96.2 0.045 1.5E-06 58.6 14.0 156 200-381 18-183 (343)
242 3cf2_A TER ATPase, transitiona 96.2 0.052 1.8E-06 64.1 15.1 177 174-376 205-407 (806)
243 1um8_A ATP-dependent CLP prote 96.1 0.022 7.6E-07 62.0 11.1 22 201-222 73-94 (376)
244 2b8t_A Thymidine kinase; deoxy 96.0 0.0048 1.7E-07 61.0 4.4 113 200-320 12-127 (223)
245 3hr8_A Protein RECA; alpha and 95.8 0.022 7.5E-07 60.6 8.9 83 199-288 60-148 (356)
246 1g5t_A COB(I)alamin adenosyltr 95.8 0.03 1E-06 53.6 8.9 115 201-319 29-163 (196)
247 1ypw_A Transitional endoplasmi 95.8 0.01 3.4E-07 71.3 6.9 156 173-349 204-385 (806)
248 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.022 7.6E-07 57.1 8.5 114 201-319 24-168 (235)
249 4h09_A Hypothetical leucine ri 95.7 0.16 5.5E-06 55.1 15.9 127 777-916 213-342 (379)
250 2x8a_A Nuclear valosin-contain 95.7 0.062 2.1E-06 55.3 11.5 126 203-349 47-191 (274)
251 2z43_A DNA repair and recombin 95.5 0.035 1.2E-06 58.9 9.3 87 201-288 108-212 (324)
252 2dhr_A FTSH; AAA+ protein, hex 95.5 0.11 3.7E-06 58.1 13.5 175 173-376 31-236 (499)
253 1v5w_A DMC1, meiotic recombina 95.5 0.039 1.3E-06 58.9 9.4 57 199-256 121-181 (343)
254 1xp8_A RECA protein, recombina 95.4 0.037 1.3E-06 59.3 9.0 81 201-288 75-161 (366)
255 1n0w_A DNA repair protein RAD5 95.4 0.024 8.3E-07 57.3 7.2 88 201-289 25-129 (243)
256 3io5_A Recombination and repai 95.3 0.041 1.4E-06 56.8 8.5 81 202-289 30-121 (333)
257 2i1q_A DNA repair and recombin 95.3 0.025 8.5E-07 60.0 7.4 58 199-257 97-168 (322)
258 1rz3_A Hypothetical protein rb 95.2 0.018 6.3E-07 56.3 5.4 42 178-222 3-44 (201)
259 2zr9_A Protein RECA, recombina 94.9 0.062 2.1E-06 57.3 8.8 82 200-288 61-148 (349)
260 2cbz_A Multidrug resistance-as 94.9 0.098 3.3E-06 52.4 9.7 23 201-223 32-54 (237)
261 1u94_A RECA protein, recombina 94.8 0.046 1.6E-06 58.4 7.5 82 200-288 63-150 (356)
262 1pgv_A TMD-1, tropomodulin TMD 94.7 0.029 9.8E-07 53.9 5.1 118 549-666 36-167 (197)
263 2pze_A Cystic fibrosis transme 94.7 0.19 6.5E-06 50.0 11.2 23 201-223 35-57 (229)
264 1cr0_A DNA primase/helicase; R 94.6 0.083 2.8E-06 55.2 8.8 23 201-223 36-58 (296)
265 1mv5_A LMRA, multidrug resista 94.6 0.19 6.6E-06 50.5 11.2 23 200-222 28-50 (243)
266 3dm5_A SRP54, signal recogniti 94.6 0.34 1.2E-05 52.9 13.7 24 199-222 99-122 (443)
267 2px0_A Flagellar biosynthesis 94.4 0.065 2.2E-06 55.7 7.3 87 199-288 104-191 (296)
268 3tqc_A Pantothenate kinase; bi 94.3 0.089 3.1E-06 55.1 8.1 46 175-222 69-114 (321)
269 2ff7_A Alpha-hemolysin translo 94.3 0.13 4.4E-06 51.9 9.1 22 201-222 36-57 (247)
270 3bh0_A DNAB-like replicative h 94.2 0.13 4.4E-06 54.1 9.3 52 200-255 68-119 (315)
271 3nbx_X ATPase RAVA; AAA+ ATPas 94.2 0.031 1E-06 62.6 4.5 43 173-223 22-64 (500)
272 3c8u_A Fructokinase; YP_612366 94.0 0.039 1.3E-06 54.3 4.5 38 181-222 7-44 (208)
273 1zp6_A Hypothetical protein AT 93.9 0.031 1E-06 54.1 3.4 24 200-223 9-32 (191)
274 2pjz_A Hypothetical protein ST 93.9 0.24 8.1E-06 50.3 10.1 22 201-222 31-52 (263)
275 2orw_A Thymidine kinase; TMTK, 93.8 0.0095 3.3E-07 57.3 -0.5 108 201-319 4-113 (184)
276 3lw7_A Adenylate kinase relate 93.8 0.027 9.3E-07 53.5 2.8 19 202-220 3-21 (179)
277 3lda_A DNA repair protein RAD5 93.7 0.14 4.8E-06 55.5 8.5 56 201-257 179-238 (400)
278 1qhx_A CPT, protein (chloramph 93.7 0.028 9.5E-07 53.6 2.6 22 201-222 4-25 (178)
279 1gvn_B Zeta; postsegregational 93.6 0.056 1.9E-06 56.0 5.0 25 198-222 31-55 (287)
280 1ly1_A Polynucleotide kinase; 93.6 0.032 1.1E-06 53.4 2.9 22 201-222 3-24 (181)
281 3kb2_A SPBC2 prophage-derived 93.5 0.031 1.1E-06 52.9 2.6 22 201-222 2-23 (173)
282 4a1f_A DNAB helicase, replicat 93.5 0.15 5E-06 53.8 7.9 52 201-256 47-98 (338)
283 2p5t_B PEZT; postsegregational 93.4 0.057 1.9E-06 54.9 4.6 40 182-222 15-54 (253)
284 1pzn_A RAD51, DNA repair and r 93.4 0.16 5.6E-06 54.2 8.4 48 199-246 130-181 (349)
285 1odf_A YGR205W, hypothetical 3 93.4 0.045 1.5E-06 56.7 3.8 25 198-222 29-53 (290)
286 1vma_A Cell division protein F 93.4 0.21 7.1E-06 52.0 8.8 87 199-288 103-195 (306)
287 3hws_A ATP-dependent CLP prote 93.4 0.048 1.6E-06 59.0 4.2 50 174-223 16-74 (363)
288 3vaa_A Shikimate kinase, SK; s 93.3 0.031 1.1E-06 54.5 2.4 23 200-222 25-47 (199)
289 3uie_A Adenylyl-sulfate kinase 93.3 0.044 1.5E-06 53.5 3.3 24 199-222 24-47 (200)
290 3rfe_A Platelet glycoprotein I 93.2 0.077 2.6E-06 47.4 4.5 34 610-643 32-66 (130)
291 2rhm_A Putative kinase; P-loop 93.1 0.047 1.6E-06 52.8 3.3 24 199-222 4-27 (193)
292 1kag_A SKI, shikimate kinase I 93.0 0.034 1.2E-06 52.8 2.0 22 201-222 5-26 (173)
293 4gp7_A Metallophosphoesterase; 93.0 0.048 1.6E-06 51.6 3.0 23 200-222 9-31 (171)
294 1kgd_A CASK, peripheral plasma 92.9 0.042 1.4E-06 52.5 2.5 22 201-222 6-27 (180)
295 1knq_A Gluconate kinase; ALFA/ 92.9 0.055 1.9E-06 51.4 3.3 24 199-222 7-30 (175)
296 1nks_A Adenylate kinase; therm 92.8 0.051 1.7E-06 52.5 3.1 22 201-222 2-23 (194)
297 3trf_A Shikimate kinase, SK; a 92.8 0.04 1.4E-06 52.9 2.3 22 201-222 6-27 (185)
298 2ga8_A Hypothetical 39.9 kDa p 92.8 0.084 2.9E-06 55.6 4.8 45 176-222 2-46 (359)
299 1sky_E F1-ATPase, F1-ATP synth 92.7 0.091 3.1E-06 57.5 5.1 49 202-251 153-202 (473)
300 4eun_A Thermoresistant glucoki 92.6 0.048 1.6E-06 53.2 2.6 23 200-222 29-51 (200)
301 1uf9_A TT1252 protein; P-loop, 92.6 0.061 2.1E-06 52.5 3.3 25 198-222 6-30 (203)
302 2qt1_A Nicotinamide riboside k 92.6 0.067 2.3E-06 52.5 3.6 24 199-222 20-43 (207)
303 3asz_A Uridine kinase; cytidin 92.6 0.063 2.1E-06 52.8 3.4 24 199-222 5-28 (211)
304 3ice_A Transcription terminati 92.6 0.068 2.3E-06 56.6 3.7 54 183-242 162-216 (422)
305 2xxa_A Signal recognition part 92.5 0.49 1.7E-05 51.9 10.7 25 198-222 98-122 (433)
306 2bdt_A BH3686; alpha-beta prot 92.5 0.06 2E-06 51.9 3.0 22 201-222 3-24 (189)
307 1ye8_A Protein THEP1, hypothet 92.4 0.061 2.1E-06 51.2 2.8 22 202-223 2-23 (178)
308 3t61_A Gluconokinase; PSI-biol 92.4 0.045 1.5E-06 53.5 2.0 23 200-222 18-40 (202)
309 1ukz_A Uridylate kinase; trans 92.4 0.065 2.2E-06 52.3 3.2 25 198-222 13-37 (203)
310 3tr0_A Guanylate kinase, GMP k 92.3 0.061 2.1E-06 52.6 2.8 22 201-222 8-29 (205)
311 2if2_A Dephospho-COA kinase; a 92.3 0.063 2.2E-06 52.5 2.9 21 202-222 3-23 (204)
312 1tev_A UMP-CMP kinase; ploop, 92.3 0.063 2.1E-06 52.0 2.9 23 200-222 3-25 (196)
313 1zuh_A Shikimate kinase; alpha 92.3 0.053 1.8E-06 51.1 2.2 24 199-222 6-29 (168)
314 1kht_A Adenylate kinase; phosp 92.2 0.059 2E-06 52.0 2.6 22 201-222 4-25 (192)
315 3kl4_A SRP54, signal recogniti 92.2 0.56 1.9E-05 51.2 10.5 25 199-223 96-120 (433)
316 1y63_A LMAJ004144AAA protein; 92.2 0.061 2.1E-06 51.6 2.6 23 200-222 10-32 (184)
317 3fwy_A Light-independent proto 92.2 0.067 2.3E-06 56.1 3.1 41 198-240 46-86 (314)
318 2yvu_A Probable adenylyl-sulfa 92.2 0.075 2.6E-06 51.0 3.3 25 199-223 12-36 (186)
319 3tau_A Guanylate kinase, GMP k 92.2 0.062 2.1E-06 52.8 2.7 25 199-223 7-31 (208)
320 3iij_A Coilin-interacting nucl 92.1 0.047 1.6E-06 52.2 1.8 23 200-222 11-33 (180)
321 2ze6_A Isopentenyl transferase 92.1 0.065 2.2E-06 54.4 2.9 22 201-222 2-23 (253)
322 1ex7_A Guanylate kinase; subst 92.1 0.049 1.7E-06 52.0 1.8 22 201-222 2-23 (186)
323 2ffh_A Protein (FFH); SRP54, s 92.0 0.46 1.6E-05 51.7 9.6 23 200-222 98-120 (425)
324 2c95_A Adenylate kinase 1; tra 92.0 0.065 2.2E-06 51.9 2.7 23 200-222 9-31 (196)
325 2jaq_A Deoxyguanosine kinase; 92.0 0.064 2.2E-06 52.4 2.6 21 202-222 2-22 (205)
326 1fx0_B ATP synthase beta chain 92.0 0.31 1.1E-05 53.4 8.1 52 201-253 166-218 (498)
327 3a4m_A L-seryl-tRNA(SEC) kinas 92.0 0.071 2.4E-06 54.5 3.0 23 200-222 4-26 (260)
328 1jjv_A Dephospho-COA kinase; P 92.0 0.076 2.6E-06 52.0 3.1 22 201-222 3-24 (206)
329 1via_A Shikimate kinase; struc 92.0 0.056 1.9E-06 51.4 2.0 21 202-222 6-26 (175)
330 3cm0_A Adenylate kinase; ATP-b 91.9 0.08 2.7E-06 50.8 3.1 23 200-222 4-26 (186)
331 2j41_A Guanylate kinase; GMP, 91.9 0.064 2.2E-06 52.5 2.5 24 200-223 6-29 (207)
332 3a00_A Guanylate kinase, GMP k 91.9 0.054 1.8E-06 52.1 1.9 22 201-222 2-23 (186)
333 1q57_A DNA primase/helicase; d 91.9 0.46 1.6E-05 53.7 9.9 54 200-256 242-295 (503)
334 2qor_A Guanylate kinase; phosp 91.9 0.055 1.9E-06 52.9 1.9 24 199-222 11-34 (204)
335 2ck3_D ATP synthase subunit be 91.8 0.54 1.8E-05 51.4 9.7 53 201-254 154-207 (482)
336 1g8p_A Magnesium-chelatase 38 91.8 0.065 2.2E-06 57.6 2.6 45 173-223 24-68 (350)
337 1cke_A CK, MSSA, protein (cyti 91.8 0.071 2.4E-06 53.1 2.6 22 201-222 6-27 (227)
338 3umf_A Adenylate kinase; rossm 91.7 0.084 2.9E-06 51.8 3.1 26 198-223 27-52 (217)
339 2r2a_A Uncharacterized protein 91.7 0.25 8.6E-06 47.7 6.4 20 202-221 7-26 (199)
340 1xjc_A MOBB protein homolog; s 91.7 0.071 2.4E-06 49.9 2.3 24 199-222 3-26 (169)
341 1qf9_A UMP/CMP kinase, protein 91.6 0.1 3.5E-06 50.3 3.5 23 200-222 6-28 (194)
342 1uj2_A Uridine-cytidine kinase 91.6 0.082 2.8E-06 53.7 2.9 25 198-222 20-44 (252)
343 3aez_A Pantothenate kinase; tr 91.6 0.098 3.3E-06 54.8 3.5 25 198-222 88-112 (312)
344 2cdn_A Adenylate kinase; phosp 91.6 0.081 2.8E-06 51.6 2.8 24 199-222 19-42 (201)
345 1htw_A HI0065; nucleotide-bind 91.6 0.1 3.4E-06 48.5 3.2 23 200-222 33-55 (158)
346 2iyv_A Shikimate kinase, SK; t 91.6 0.06 2.1E-06 51.6 1.8 21 202-222 4-24 (184)
347 2bwj_A Adenylate kinase 5; pho 91.6 0.085 2.9E-06 51.2 2.9 22 201-222 13-34 (199)
348 2hf9_A Probable hydrogenase ni 91.5 0.13 4.3E-06 51.2 4.3 25 199-223 37-61 (226)
349 2plr_A DTMP kinase, probable t 91.5 0.087 3E-06 51.8 3.0 23 201-223 5-27 (213)
350 1j8m_F SRP54, signal recogniti 91.5 0.48 1.6E-05 49.1 8.6 87 200-288 98-189 (297)
351 2vli_A Antibiotic resistance p 91.4 0.053 1.8E-06 51.9 1.2 23 200-222 5-27 (183)
352 3jvv_A Twitching mobility prot 91.4 0.057 1.9E-06 57.7 1.5 109 201-322 124-234 (356)
353 1lvg_A Guanylate kinase, GMP k 91.4 0.068 2.3E-06 52.0 1.9 22 201-222 5-26 (198)
354 2grj_A Dephospho-COA kinase; T 91.4 0.11 3.6E-06 50.1 3.3 24 199-222 11-34 (192)
355 2pt5_A Shikimate kinase, SK; a 91.3 0.085 2.9E-06 49.6 2.5 21 202-222 2-22 (168)
356 2bbw_A Adenylate kinase 4, AK4 91.3 0.09 3.1E-06 53.2 2.8 23 200-222 27-49 (246)
357 2pez_A Bifunctional 3'-phospho 91.2 0.1 3.4E-06 49.8 3.0 23 200-222 5-27 (179)
358 2jeo_A Uridine-cytidine kinase 91.2 0.1 3.5E-06 52.7 3.2 24 199-222 24-47 (245)
359 1e6c_A Shikimate kinase; phosp 91.2 0.074 2.5E-06 50.3 2.0 21 202-222 4-24 (173)
360 3upu_A ATP-dependent DNA helic 91.2 0.33 1.1E-05 54.2 7.6 22 202-223 47-68 (459)
361 1znw_A Guanylate kinase, GMP k 91.1 0.098 3.4E-06 51.3 2.8 23 200-222 20-42 (207)
362 2f6r_A COA synthase, bifunctio 91.1 0.12 4.1E-06 53.3 3.6 24 199-222 74-97 (281)
363 3tlx_A Adenylate kinase 2; str 91.0 0.14 4.7E-06 51.6 3.9 24 199-222 28-51 (243)
364 2pbr_A DTMP kinase, thymidylat 91.0 0.093 3.2E-06 50.7 2.6 21 202-222 2-22 (195)
365 3ney_A 55 kDa erythrocyte memb 91.0 0.1 3.4E-06 50.3 2.7 24 199-222 18-41 (197)
366 4a74_A DNA repair and recombin 91.0 0.28 9.5E-06 48.8 6.2 44 200-243 25-72 (231)
367 1nn5_A Similar to deoxythymidy 91.0 0.099 3.4E-06 51.5 2.7 23 200-222 9-31 (215)
368 1rj9_A FTSY, signal recognitio 90.9 0.093 3.2E-06 54.7 2.6 24 199-222 101-124 (304)
369 3e1s_A Exodeoxyribonuclease V, 90.9 0.35 1.2E-05 55.3 7.6 22 201-222 205-226 (574)
370 2wsm_A Hydrogenase expression/ 90.8 0.13 4.5E-06 50.8 3.6 25 199-223 29-53 (221)
371 2z0h_A DTMP kinase, thymidylat 90.8 0.23 8E-06 47.9 5.3 21 202-222 2-22 (197)
372 1sq5_A Pantothenate kinase; P- 90.8 0.24 8.1E-06 51.9 5.6 24 199-222 79-102 (308)
373 3rfe_A Platelet glycoprotein I 90.8 0.28 9.5E-06 43.7 5.3 54 612-668 11-67 (130)
374 1ls1_A Signal recognition part 90.8 0.41 1.4E-05 49.6 7.4 24 200-223 98-121 (295)
375 4e22_A Cytidylate kinase; P-lo 90.8 0.11 3.7E-06 52.8 2.8 22 201-222 28-49 (252)
376 1aky_A Adenylate kinase; ATP:A 90.8 0.095 3.3E-06 51.9 2.4 22 201-222 5-26 (220)
377 2q6t_A DNAB replication FORK h 90.7 0.67 2.3E-05 51.3 9.5 53 201-256 201-253 (444)
378 1gtv_A TMK, thymidylate kinase 90.7 0.085 2.9E-06 52.0 1.9 21 202-222 2-22 (214)
379 2wwf_A Thymidilate kinase, put 90.7 0.11 3.9E-06 50.9 2.9 24 200-223 10-33 (212)
380 1pgv_A TMD-1, tropomodulin TMD 90.6 0.22 7.6E-06 47.7 4.7 92 572-664 31-134 (197)
381 1zd8_A GTP:AMP phosphotransfer 90.5 0.12 4.1E-06 51.5 2.9 23 200-222 7-29 (227)
382 2pt7_A CAG-ALFA; ATPase, prote 90.5 0.41 1.4E-05 50.5 7.2 80 201-290 172-251 (330)
383 1z6g_A Guanylate kinase; struc 90.5 0.092 3.2E-06 51.9 2.0 22 201-222 24-45 (218)
384 1m7g_A Adenylylsulfate kinase; 90.4 0.13 4.4E-06 50.5 3.0 24 199-222 24-47 (211)
385 2f1r_A Molybdopterin-guanine d 90.4 0.094 3.2E-06 49.4 1.9 22 201-222 3-24 (171)
386 1ixz_A ATP-dependent metallopr 90.3 0.11 3.7E-06 52.9 2.4 21 203-223 52-72 (254)
387 2j37_W Signal recognition part 90.3 1.3 4.5E-05 49.3 11.3 25 198-222 99-123 (504)
388 1tue_A Replication protein E1; 90.3 0.15 5.1E-06 48.9 3.1 37 182-223 45-81 (212)
389 3b9q_A Chloroplast SRP recepto 90.3 0.14 4.8E-06 53.3 3.2 24 199-222 99-122 (302)
390 2i3b_A HCR-ntpase, human cance 90.3 0.11 3.7E-06 50.0 2.2 22 202-223 3-24 (189)
391 1s96_A Guanylate kinase, GMP k 90.1 0.12 4.2E-06 50.9 2.6 23 200-222 16-38 (219)
392 3fb4_A Adenylate kinase; psych 90.1 0.12 4.3E-06 50.9 2.6 21 202-222 2-22 (216)
393 2pcj_A ABC transporter, lipopr 90.1 0.15 5E-06 50.7 3.1 22 201-222 31-52 (224)
394 1vht_A Dephospho-COA kinase; s 90.1 0.15 5E-06 50.4 3.1 23 200-222 4-26 (218)
395 2r6a_A DNAB helicase, replicat 90.0 0.51 1.7E-05 52.5 7.7 50 201-253 204-253 (454)
396 1zak_A Adenylate kinase; ATP:A 90.0 0.11 3.8E-06 51.5 2.1 23 200-222 5-27 (222)
397 3l0o_A Transcription terminati 90.0 0.68 2.3E-05 49.0 8.0 55 181-241 161-216 (427)
398 2onk_A Molybdate/tungstate ABC 89.9 0.13 4.4E-06 51.5 2.5 22 201-222 25-46 (240)
399 3dl0_A Adenylate kinase; phosp 89.9 0.13 4.6E-06 50.6 2.6 21 202-222 2-22 (216)
400 2v54_A DTMP kinase, thymidylat 89.8 0.14 4.7E-06 49.9 2.6 23 201-223 5-27 (204)
401 2ged_A SR-beta, signal recogni 89.8 0.22 7.4E-06 47.9 4.1 25 199-223 47-71 (193)
402 4akg_A Glutathione S-transfera 89.8 2 6.8E-05 57.7 14.1 139 201-349 1268-1431(2695)
403 3e70_C DPA, signal recognition 89.8 0.17 5.9E-06 53.2 3.5 24 199-222 128-151 (328)
404 3tif_A Uncharacterized ABC tra 89.8 0.15 5E-06 51.0 2.8 22 201-222 32-53 (235)
405 3p32_A Probable GTPase RV1496/ 89.8 0.27 9.4E-06 52.6 5.1 37 182-222 65-101 (355)
406 1g41_A Heat shock protein HSLU 89.7 0.24 8.4E-06 54.1 4.7 50 173-222 15-72 (444)
407 2ehv_A Hypothetical protein PH 89.7 0.15 5.1E-06 51.6 2.8 22 201-222 31-52 (251)
408 3be4_A Adenylate kinase; malar 89.6 0.14 4.7E-06 50.6 2.4 22 201-222 6-27 (217)
409 3cmu_A Protein RECA, recombina 89.5 0.51 1.8E-05 61.0 8.0 83 199-288 1426-1514(2050)
410 3nwj_A ATSK2; P loop, shikimat 89.5 0.12 4.3E-06 52.0 2.0 22 201-222 49-70 (250)
411 3ake_A Cytidylate kinase; CMP 89.3 0.16 5.4E-06 49.7 2.6 21 202-222 4-24 (208)
412 3b85_A Phosphate starvation-in 89.3 0.13 4.6E-06 50.1 2.0 22 201-222 23-44 (208)
413 3gfo_A Cobalt import ATP-bindi 89.2 0.17 5.9E-06 51.8 2.8 22 201-222 35-56 (275)
414 1iy2_A ATP-dependent metallopr 89.2 0.15 5.1E-06 52.7 2.4 50 173-223 40-96 (278)
415 2og2_A Putative signal recogni 89.1 0.19 6.4E-06 53.5 3.2 24 199-222 156-179 (359)
416 1b0u_A Histidine permease; ABC 89.1 0.18 6E-06 51.4 2.8 22 201-222 33-54 (262)
417 2yhs_A FTSY, cell division pro 89.1 0.33 1.1E-05 53.5 5.1 25 198-222 291-315 (503)
418 3vkw_A Replicase large subunit 89.1 0.79 2.7E-05 49.8 8.0 26 197-222 158-183 (446)
419 3r20_A Cytidylate kinase; stru 89.1 0.17 5.9E-06 50.1 2.6 23 200-222 9-31 (233)
420 1e4v_A Adenylate kinase; trans 89.0 0.18 6.3E-06 49.6 2.9 21 202-222 2-22 (214)
421 3lnc_A Guanylate kinase, GMP k 89.0 0.13 4.3E-06 51.5 1.6 22 201-222 28-50 (231)
422 3k1j_A LON protease, ATP-depen 89.0 0.26 8.9E-06 57.1 4.5 43 173-223 41-83 (604)
423 1sgw_A Putative ABC transporte 88.9 0.16 5.5E-06 49.8 2.3 22 201-222 36-57 (214)
424 1ji0_A ABC transporter; ATP bi 88.9 0.19 6.4E-06 50.5 2.8 22 201-222 33-54 (240)
425 2olj_A Amino acid ABC transpor 88.9 0.19 6.5E-06 51.1 2.8 22 201-222 51-72 (263)
426 4g1u_C Hemin import ATP-bindin 88.8 0.19 6.5E-06 51.2 2.8 22 201-222 38-59 (266)
427 3hjn_A DTMP kinase, thymidylat 88.8 0.45 1.5E-05 46.0 5.4 49 202-252 2-50 (197)
428 3d3q_A TRNA delta(2)-isopenten 88.8 0.19 6.5E-06 52.7 2.8 22 201-222 8-29 (340)
429 1g6h_A High-affinity branched- 88.8 0.19 6.5E-06 51.0 2.8 22 201-222 34-55 (257)
430 1oix_A RAS-related protein RAB 88.8 0.25 8.7E-06 47.5 3.6 25 199-223 28-52 (191)
431 2xb4_A Adenylate kinase; ATP-b 88.7 0.18 6.3E-06 49.9 2.6 21 202-222 2-22 (223)
432 1np6_A Molybdopterin-guanine d 88.7 0.17 5.9E-06 47.7 2.2 24 200-223 6-29 (174)
433 2vp4_A Deoxynucleoside kinase; 88.6 0.24 8.1E-06 49.4 3.3 25 198-222 18-42 (230)
434 1vpl_A ABC transporter, ATP-bi 88.6 0.2 7E-06 50.6 2.8 22 201-222 42-63 (256)
435 2d2e_A SUFC protein; ABC-ATPas 88.5 0.2 7E-06 50.5 2.8 22 201-222 30-51 (250)
436 2wji_A Ferrous iron transport 88.4 0.27 9.1E-06 45.9 3.4 23 201-223 4-26 (165)
437 3cf2_A TER ATPase, transitiona 88.4 0.74 2.5E-05 54.4 7.8 51 173-223 477-534 (806)
438 3b5x_A Lipid A export ATP-bind 88.4 1.4 4.7E-05 50.7 10.1 23 200-222 369-391 (582)
439 1zu4_A FTSY; GTPase, signal re 88.4 0.23 7.9E-06 52.1 3.2 24 199-222 104-127 (320)
440 2zu0_C Probable ATP-dependent 88.3 0.21 7.3E-06 50.9 2.8 22 201-222 47-68 (267)
441 3a8t_A Adenylate isopentenyltr 88.3 0.25 8.6E-06 51.7 3.3 25 199-223 39-63 (339)
442 1ak2_A Adenylate kinase isoenz 88.3 0.2 6.8E-06 50.1 2.5 23 200-222 16-38 (233)
443 2qi9_C Vitamin B12 import ATP- 88.3 0.22 7.5E-06 50.2 2.8 22 201-222 27-48 (249)
444 2zej_A Dardarin, leucine-rich 88.3 0.21 7.2E-06 47.7 2.6 22 202-223 4-25 (184)
445 3crm_A TRNA delta(2)-isopenten 88.2 0.22 7.6E-06 51.9 2.9 22 201-222 6-27 (323)
446 3zvl_A Bifunctional polynucleo 88.2 0.21 7.1E-06 54.8 2.8 26 198-223 256-281 (416)
447 1ltq_A Polynucleotide kinase; 88.2 0.22 7.4E-06 52.1 2.9 22 201-222 3-24 (301)
448 1yrb_A ATP(GTP)binding protein 88.1 0.28 9.5E-06 50.0 3.6 25 198-222 12-36 (262)
449 2nq2_C Hypothetical ABC transp 88.1 0.23 7.9E-06 50.2 2.9 22 201-222 32-53 (253)
450 3sr0_A Adenylate kinase; phosp 88.1 0.22 7.4E-06 48.5 2.6 22 202-223 2-23 (206)
451 2ixe_A Antigen peptide transpo 88.1 0.22 7.6E-06 50.9 2.8 22 201-222 46-67 (271)
452 2dr3_A UPF0273 protein PH0284; 88.1 0.33 1.1E-05 48.8 4.1 38 201-240 24-61 (247)
453 2ghi_A Transport protein; mult 88.1 0.23 7.7E-06 50.5 2.8 22 201-222 47-68 (260)
454 3cmu_A Protein RECA, recombina 88.1 0.87 3E-05 58.9 8.6 83 200-289 383-471 (2050)
455 4eaq_A DTMP kinase, thymidylat 88.1 0.39 1.3E-05 47.7 4.5 25 199-223 25-49 (229)
456 2yz2_A Putative ABC transporte 87.9 0.23 7.9E-06 50.7 2.8 22 201-222 34-55 (266)
457 2ihy_A ABC transporter, ATP-bi 87.9 0.23 8E-06 50.9 2.8 22 201-222 48-69 (279)
458 3bgw_A DNAB-like replicative h 87.9 1.8 6.3E-05 47.6 10.2 52 200-255 197-248 (444)
459 3f9v_A Minichromosome maintena 87.8 0.23 8E-06 57.1 3.0 51 173-223 295-350 (595)
460 1tf7_A KAIC; homohexamer, hexa 87.8 0.53 1.8E-05 53.4 6.0 23 200-222 281-303 (525)
461 1q3t_A Cytidylate kinase; nucl 87.8 0.22 7.5E-06 49.9 2.5 25 198-222 14-38 (236)
462 2v3c_C SRP54, signal recogniti 87.7 0.29 9.8E-06 53.7 3.5 25 199-223 98-122 (432)
463 3end_A Light-independent proto 87.6 0.43 1.5E-05 50.0 4.7 43 198-242 39-81 (307)
464 2r8r_A Sensor protein; KDPD, P 87.5 0.55 1.9E-05 45.9 5.0 105 201-319 7-127 (228)
465 3exa_A TRNA delta(2)-isopenten 87.5 0.27 9.3E-06 50.7 2.9 23 200-222 3-25 (322)
466 2eyu_A Twitching motility prot 87.3 0.3 1E-05 49.6 3.2 23 200-222 25-47 (261)
467 3sop_A Neuronal-specific septi 87.3 0.29 1E-05 50.0 3.1 21 202-222 4-24 (270)
468 2v9p_A Replication protein E1; 87.3 0.27 9.3E-06 50.9 2.8 23 200-222 126-148 (305)
469 1a7j_A Phosphoribulokinase; tr 87.2 0.13 4.6E-06 53.2 0.5 24 199-222 4-27 (290)
470 1nlf_A Regulatory protein REPA 87.2 0.29 9.9E-06 50.4 3.1 22 201-222 31-52 (279)
471 2ocp_A DGK, deoxyguanosine kin 87.1 0.31 1.1E-05 48.9 3.2 24 200-223 2-25 (241)
472 2dyk_A GTP-binding protein; GT 87.1 0.31 1.1E-05 45.0 3.0 23 201-223 2-24 (161)
473 3foz_A TRNA delta(2)-isopenten 87.0 0.32 1.1E-05 50.0 3.2 24 199-222 9-32 (316)
474 3vr4_D V-type sodium ATPase su 87.0 0.69 2.4E-05 50.2 5.9 85 202-288 153-257 (465)
475 2wjg_A FEOB, ferrous iron tran 86.9 0.36 1.2E-05 46.1 3.4 25 199-223 6-30 (188)
476 2ce2_X GTPase HRAS; signaling 86.8 0.3 1E-05 45.2 2.7 22 202-223 5-26 (166)
477 2qmh_A HPR kinase/phosphorylas 86.8 0.34 1.1E-05 46.2 2.9 23 201-223 35-57 (205)
478 3cmw_A Protein RECA, recombina 86.7 0.97 3.3E-05 57.7 7.9 80 202-288 385-470 (1706)
479 3nh6_A ATP-binding cassette SU 86.7 0.28 9.5E-06 51.0 2.6 22 201-222 81-102 (306)
480 2f9l_A RAB11B, member RAS onco 86.6 0.35 1.2E-05 46.8 3.1 24 200-223 5-28 (199)
481 2j9r_A Thymidine kinase; TK1, 86.6 0.62 2.1E-05 45.1 4.7 110 200-320 28-139 (214)
482 1nij_A Hypothetical protein YJ 86.5 0.34 1.2E-05 50.9 3.2 25 199-223 3-27 (318)
483 3kta_A Chromosome segregation 86.4 0.36 1.2E-05 45.9 3.1 21 202-222 28-48 (182)
484 1svm_A Large T antigen; AAA+ f 86.4 0.3 1E-05 52.4 2.7 24 199-222 168-191 (377)
485 3thx_A DNA mismatch repair pro 86.4 1.7 5.9E-05 52.3 9.5 22 199-220 661-682 (934)
486 2bbs_A Cystic fibrosis transme 86.3 0.35 1.2E-05 49.9 3.1 23 201-223 65-87 (290)
487 2gj8_A MNME, tRNA modification 86.3 0.35 1.2E-05 45.5 2.9 23 201-223 5-27 (172)
488 3qf4_A ABC transporter, ATP-bi 86.2 2.4 8.4E-05 48.6 10.4 22 201-222 370-391 (587)
489 4edh_A DTMP kinase, thymidylat 86.2 0.87 3E-05 44.5 5.7 24 200-223 6-29 (213)
490 3q72_A GTP-binding protein RAD 86.1 0.35 1.2E-05 44.9 2.8 22 202-223 4-25 (166)
491 1fzq_A ADP-ribosylation factor 86.1 0.47 1.6E-05 45.0 3.7 25 199-223 15-39 (181)
492 1cp2_A CP2, nitrogenase iron p 86.0 0.68 2.3E-05 47.2 5.1 38 201-240 2-39 (269)
493 2lkc_A Translation initiation 86.0 0.44 1.5E-05 44.9 3.4 25 199-223 7-31 (178)
494 1w36_D RECD, exodeoxyribonucle 85.9 1.7 5.7E-05 50.2 8.9 22 201-222 165-186 (608)
495 2iw3_A Elongation factor 3A; a 85.9 2.6 8.9E-05 50.8 10.6 119 201-323 462-609 (986)
496 1z2a_A RAS-related protein RAB 85.9 0.43 1.5E-05 44.4 3.2 24 200-223 5-28 (168)
497 1svi_A GTP-binding protein YSX 85.8 0.44 1.5E-05 45.7 3.4 25 199-223 22-46 (195)
498 2fz4_A DNA repair protein RAD2 85.7 3.3 0.00011 41.1 9.9 100 203-316 111-226 (237)
499 2nzj_A GTP-binding protein REM 85.7 0.49 1.7E-05 44.3 3.6 24 200-223 4-27 (175)
500 3fvq_A Fe(3+) IONS import ATP- 85.6 0.39 1.3E-05 50.9 3.1 22 201-222 31-52 (359)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-48 Score=454.45 Aligned_cols=318 Identities=18% Similarity=0.257 Sum_probs=258.4
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc--CccccccCceeEEEEeCCCC--CHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN--DNDVINNFEKRIWVSVSDPF--DEYRVA 248 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~ 248 (944)
+..|||+.++++|.++|.... .+..++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ ++..++
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 204 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF 204 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHH
T ss_pred CccCCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHH
Confidence 343599999999999996542 23579999999999999999999998 67899999999999999885 899999
Q ss_pred HHHHHHhhCCCC-------CCCCHHHHHHHHHHHhcCC-ceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh
Q 042336 249 KAIIEALEGSAP-------NLGELNSLLQHICLSITGK-KFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET 320 (944)
Q Consensus 249 ~~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 320 (944)
+.|+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|. . .+||+||||||++.
T Consensus 205 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~-------~-~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 205 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWA-------Q-ELRLRCLVTTRDVE 276 (549)
T ss_dssp HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHH-------H-HTTCEEEEEESBGG
T ss_pred HHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccc-------c-cCCCEEEEEcCCHH
Confidence 999999986521 2234566788999999996 999999999975322222 1 27999999999999
Q ss_pred hhhccc-ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCHHHHHHHH
Q 042336 321 VARMME-SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTEEWQNIL 399 (944)
Q Consensus 321 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~~ 399 (944)
++..++ ...+|++++|+.++||+||.+++|... .++.+++++++|+++|+|+||||+++|+.++.+ . .+|...+
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l 351 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQL 351 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHH
T ss_pred HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHh
Confidence 998876 446899999999999999999987653 246788999999999999999999999999765 2 3443444
Q ss_pred hhhhhhhhhhccchhhHHHhhhhcChHHHHHHHh-----------HhcccCCCceecHHHHHHHHHHc--CCcccCC-Cc
Q 042336 400 DSEMWQLEEFEKDLLAPLLLSYTDLPSRIKRCFL-----------YCAVFPKNYNIKKDELIKLWAAQ--GCIGTKG-NK 465 (944)
Q Consensus 400 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~i~~~~li~~w~ae--g~i~~~~-~~ 465 (944)
.+..+.. ....+..++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.... +.
T Consensus 352 ~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 352 NNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred HHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC
Confidence 4333322 2456899999999999999999999 999999999999 8999999 9998776 56
Q ss_pred hHHHHHHHHHHHHHhccCCcccccc-cCeEEechHHHHHHHHhhcccce
Q 042336 466 EMEMIGEEYFDYLATRSFFQEFVEV-DIIYKMHDIVHDFAQFLTKNECF 513 (944)
Q Consensus 466 ~~e~~~~~~~~~L~~~~li~~~~~~-~~~~~mH~lv~~~~~~~~~~e~~ 513 (944)
.++++++ ||++|+++||+++...+ ...|+|||+||+||++++.++++
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 7788888 99999999999987654 34599999999999999887764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4e-39 Score=375.23 Aligned_cols=286 Identities=19% Similarity=0.186 Sum_probs=228.8
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCce-eEEEEeCCCCCHHHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEK-RIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~ 252 (944)
..|||++++++|.++|... +..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3599999999999999743 23689999999999999999999998788999986 89999999999989888888
Q ss_pred HHhhCCC---C---C-----CCCHHHHHHHHHHHh---cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc
Q 042336 253 EALEGSA---P---N-----LGELNSLLQHICLSI---TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK 318 (944)
Q Consensus 253 ~~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 318 (944)
+.++... . + ..+.+.+...+++.| .++|+||||||||+. ..|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 7654211 1 1 012344556666655 789999999999973 345433 3 69999999999
Q ss_pred hhhhhcccccceEeCC------CCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCC-C
Q 042336 319 ETVARMMESIDILIIK------ELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKR-T 391 (944)
Q Consensus 319 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~-~ 391 (944)
+.++..+.....+.++ +|+.+|||+||.+.. +... .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988755544566676 999999999999984 3221 2233333 9999999999999998875 6
Q ss_pred HHHHHHHHhhhhhhhhhhccchhhHHHhhhhcChHHH-HHHHhHhcccCCCceecHHHHHHHHHHcCCcccCCCchHHHH
Q 042336 392 TEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPSRI-KRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKEMEMI 470 (944)
Q Consensus 392 ~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~ 470 (944)
..+|... ....+..+|.+||+.||++. |+||+|||+||+++.|+++.++.+|+++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7788753 13468999999999999999 99999999999999999999999999887 235
Q ss_pred HHHHHHHHHhccCCcccccccCeEEechHHHHHHH
Q 042336 471 GEEYFDYLATRSFFQEFVEVDIIYKMHDIVHDFAQ 505 (944)
Q Consensus 471 ~~~~~~~L~~~~li~~~~~~~~~~~mH~lv~~~~~ 505 (944)
++.+|++|+++||++... ....|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 889999999999999742 2346999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-36 Score=392.88 Aligned_cols=311 Identities=21% Similarity=0.276 Sum_probs=247.1
Q ss_pred ccCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc-cccC-ceeEEEEeCCCCC--HH
Q 042336 170 INVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV-INNF-EKRIWVSVSDPFD--EY 245 (944)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~ 245 (944)
...+.||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 344579999999999999997543 36799999999999999999999997543 4556 5677999998543 44
Q ss_pred HHHHHHHHHhhCCCC----CCCCHHHHHHHHHHHhcCC--ceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch
Q 042336 246 RVAKAIIEALEGSAP----NLGELNSLLQHICLSITGK--KFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 319 (944)
..+..++..+..... ...+.+.+...++..+.++ |+||||||||+. ..|.. .++||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCH
Confidence 557777777765432 2356778888899888877 999999999864 22322 36799999999999
Q ss_pred hhhhc-ccccceEeCCC-CChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCHHHHHH
Q 042336 320 TVARM-MESIDILIIKE-LSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTEEWQN 397 (944)
Q Consensus 320 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~ 397 (944)
.++.. ++....+.+.+ |+++++++||...++... +..++++++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 45578899996 999999999999885432 23356789999999999999999999998765 34666
Q ss_pred HHhhhhhhh--------hhhccchhhHHHhhhhcChHHHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccCCCchHHH
Q 042336 398 ILDSEMWQL--------EEFEKDLLAPLLLSYTDLPSRIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKEMEM 469 (944)
Q Consensus 398 ~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~ 469 (944)
.+....... ......+..++.+||+.||++.|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~ 409 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TE 409 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HH
Confidence 554432211 01124689999999999999999999999999999999999999999654 46
Q ss_pred HHHHHHHHHHhccCCcccccccC-eEEechHHHHHHHHhhccc
Q 042336 470 IGEEYFDYLATRSFFQEFVEVDI-IYKMHDIVHDFAQFLTKNE 511 (944)
Q Consensus 470 ~~~~~~~~L~~~~li~~~~~~~~-~~~mH~lv~~~~~~~~~~e 511 (944)
.+++++++|+++||++....++. .|+||++||++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 78999999999999997654333 4999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=337.54 Aligned_cols=305 Identities=21% Similarity=0.274 Sum_probs=232.5
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc-cccC-ceeEEEEeCCCCCHHHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV-INNF-EKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~ 249 (944)
.+.||||+.++++|.++|.... +..++|+|+||||+||||||++++++..+ ..+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4579999999999999997532 35789999999999999999999997655 7889 58999999875 3344444
Q ss_pred HH---HHHhhCC----CCCCCCHHHHHHHHHHHhcC--CceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh
Q 042336 250 AI---IEALEGS----APNLGELNSLLQHICLSITG--KKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET 320 (944)
Q Consensus 250 ~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 320 (944)
.+ +..++.. .....+.+.....+...+.+ +++||||||+|+. ..+. . .++|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l~-~---l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVLK-A---FDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHHH-T---TCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHHH-H---hcCCCeEEEECCCcH
Confidence 43 3444421 12334566777778777765 7999999999863 2222 2 256899999999998
Q ss_pred hhhcccccceEeC---CCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcCCCCHHHHHH
Q 042336 321 VARMMESIDILII---KELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTEEWQN 397 (944)
Q Consensus 321 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~ 397 (944)
++..+. ...+.+ ++|+.+++++||...++.. .+...+.+.+|+++|+|+||||..+|++++.+. ..|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 877643 233443 6899999999999988642 122245688999999999999999999998764 35776
Q ss_pred HHhhhhhhh--------hhhccchhhHHHhhhhcChHHHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccCCCchHHH
Q 042336 398 ILDSEMWQL--------EEFEKDLLAPLLLSYTDLPSRIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKEMEM 469 (944)
Q Consensus 398 ~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~ 469 (944)
.+....... ......+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~ 409 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TE 409 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HH
Confidence 655432111 11124688999999999999999999999999999999999999999542 24
Q ss_pred HHHHHHHHHHhccCCccccccc-CeEEechHHHHHHHHhhc
Q 042336 470 IGEEYFDYLATRSFFQEFVEVD-IIYKMHDIVHDFAQFLTK 509 (944)
Q Consensus 470 ~~~~~~~~L~~~~li~~~~~~~-~~~~mH~lv~~~~~~~~~ 509 (944)
.++.++++|+++||++....++ ..|+||+++|++++....
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 5788999999999998654432 359999999999988743
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.8e-26 Score=280.99 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=56.7
Q ss_pred cCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcchh---------
Q 042336 851 EIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRILE--------- 921 (944)
Q Consensus 851 ~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~--------- 921 (944)
.+..|.+|+.|+..+++++......|..++.+++|+.|+|++|.....+|..+.++++|++|++++|+...
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 34455666666777777776666667777788888888888887777888888888889999888764310
Q ss_pred ------------------hhcCcCCCCCCCcccCCCCccc
Q 042336 922 ------------------ERFDEETGEDWSKISHVPNFKT 943 (944)
Q Consensus 922 ------------------~~~~~~~~~~~~~i~hi~~~~~ 943 (944)
..|....+++|++|+|+|++.-
T Consensus 728 ~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 728 TFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp GSCGGGGCSCTEEESTTSCCCCSCC---------------
T ss_pred cCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccCC
Confidence 1366788899999999999864
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.8e-23 Score=252.04 Aligned_cols=343 Identities=15% Similarity=0.151 Sum_probs=246.5
Q ss_pred CCceEEEEEEeCCCCc------------------chhhcc--CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEe
Q 042336 530 EEELRHSMLVFGNEAS------------------FPVFMF--NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKI 589 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L 589 (944)
...++.+.+..+.+.. +|..+. .+++|+.|.+.++... ..++..+.++++|++|+|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~----~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM----TQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC----CSCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC----ccChHHHhCCCCCCEEEC
Confidence 4578899999988776 777776 8999999999998642 223455889999999999
Q ss_pred ccCC-Cccccc-ccchhhhccc-------ccceeccCcccccccCc--cccCCCcccEEEecCccCCcccCcccccCCCC
Q 042336 590 TRNS-KENSIY-EIPKEIQKLI-------HLRYFKLHWLEIKELPD--TCCELFNLQTIEIEGCYNLNRLPQGVGKLVNL 658 (944)
Q Consensus 590 ~~~~-~~~~~~-~lp~~i~~l~-------~Lr~L~Ls~~~i~~lP~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 658 (944)
++|. . -. .+|..++++. +|++|+|++|.+..+|. .++++++|++|+|++|. +..+| .++++++|
T Consensus 523 s~N~~l---sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 523 ACNRGI---SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKL 597 (876)
T ss_dssp TTCTTS---CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEE
T ss_pred cCCCCc---ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcc
Confidence 9996 3 22 5788888776 99999999999999999 89999999999999998 66999 89999999
Q ss_pred ceeeccccccccccccccCCCC-CCcCCceEecccccCCCCcccccccCcC--cccCCceEEEcCccCcCChhhhhhhhc
Q 042336 659 RHLIFDVNFVEYMPKGIERLTC-LRTLSEFVVVSRSDKYGNKACNLGGLRQ--LNHLRGSLRIRGLRNVTDVHEAKIVEL 735 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~~~l~i~~l~~~~~~~~~~~~~l 735 (944)
++|+++.|.+..+|..+..+++ |+.|. ...|... ..+..+..+.. |+. +.+.... +..........+
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~----Ls~N~L~-~lp~~~~~~~~~~L~~----L~Ls~N~-l~g~ip~l~~~l 667 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLG----FSHNKLK-YIPNIFNAKSVYVMGS----VDFSYNK-IGSEGRNISCSM 667 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEE----CCSSCCC-SCCSCCCTTCSSCEEE----EECCSSC-TTTTSSSCSSCT
T ss_pred eEEECcCCccccchHHHhhccccCCEEE----CcCCCCC-cCchhhhccccCCCCE----EECcCCc-CCCccccchhhh
Confidence 9999999988899999999998 99887 4555444 34444443332 432 2222211 110000000111
Q ss_pred c--cCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhcc-CCCCCCCceEEEeeCCCCCCChhhhcC--------C
Q 042336 736 E--KKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEA-LRPPPNLESLDVWKYRGETLPSWIMSL--------N 804 (944)
Q Consensus 736 ~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~lp~~~~~l--------~ 804 (944)
. ...+|+.|+++.|.+... +.. +..+++|+.|+|++|....+|.++... +
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~l-------------------p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKF-------------------PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSC-------------------CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG
T ss_pred ccccCCCcCEEEccCCcCCcc-------------------CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccC
Confidence 1 335789999998865532 212 235678999999999888888776532 3
Q ss_pred CccEEEeeccCCCCcCCC-CC--CCCCcceeeecccccceEeCccccCccCccCccccccccccc---cccccccccCCc
Q 042336 805 KLKKLELSFCNKFEIMPP-LG--KLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDL---DEWEEWENEKND 878 (944)
Q Consensus 805 ~L~~L~L~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l---~~~~~~~~~~~~ 878 (944)
+|+.|+|++|... .+|. +. .+++|+.|+|+++. +..++. ....+++|+.|.+.+. .++......|..
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~-----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCC-----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccch-----hhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 8999999999766 4554 55 89999999999875 221111 1113445555544331 224444556667
Q ss_pred cccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcch
Q 042336 879 ITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRIL 920 (944)
Q Consensus 879 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 920 (944)
+..+++|+.|+|++|.. ..+|..+. ++|+.|++++|+..
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred HhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 78899999999999975 88998865 79999999999863
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=9.4e-24 Score=250.89 Aligned_cols=341 Identities=15% Similarity=0.153 Sum_probs=245.2
Q ss_pred CCceEEEEEEeCCCCc------------------chhhcc--CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEe
Q 042336 530 EEELRHSMLVFGNEAS------------------FPVFMF--NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKI 589 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L 589 (944)
....+.+.+..+.+.. +|..+. ++++|++|.+.++.... .++..+.++++|++|+|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEEC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEEC
Confidence 4578889998888776 788888 89999999999886422 23445889999999999
Q ss_pred ccCC-Cccccc-ccchhhhcc------cccceeccCcccccccCc--cccCCCcccEEEecCccCCc-ccCcccccCCCC
Q 042336 590 TRNS-KENSIY-EIPKEIQKL------IHLRYFKLHWLEIKELPD--TCCELFNLQTIEIEGCYNLN-RLPQGVGKLVNL 658 (944)
Q Consensus 590 ~~~~-~~~~~~-~lp~~i~~l------~~Lr~L~Ls~~~i~~lP~--~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L 658 (944)
++|. . .. .+|..++++ ++|++|++++|.+..+|. .++++++|++|++++|. +. .+| .++.+++|
T Consensus 281 s~n~~l---~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 281 ACNRGI---SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKL 355 (636)
T ss_dssp TTCTTS---CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEE
T ss_pred cCCCCC---ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCC
Confidence 9997 3 33 588888887 999999999999999998 89999999999999998 55 899 89999999
Q ss_pred ceeeccccccccccccccCCCC-CCcCCceEecccccCCCCcccccccCc--CcccCCceEEEcCccCcCChhhhhhhhc
Q 042336 659 RHLIFDVNFVEYMPKGIERLTC-LRTLSEFVVVSRSDKYGNKACNLGGLR--QLNHLRGSLRIRGLRNVTDVHEAKIVEL 735 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~~~l~i~~l~~~~~~~~~~~~~l 735 (944)
++|+++.|.+..+|..++.+++ |+.|. ...|... ..+..+..+. +|+. +.+.... + .......+
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~----Ls~N~l~-~lp~~~~~~~l~~L~~----L~Ls~N~-l---~~~~p~~l 422 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLS----FAHNKLK-YIPNIFDAKSVSVMSA----IDFSYNE-I---GSVDGKNF 422 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEE----CCSSCCS-SCCSCCCTTCSSCEEE----EECCSSC-T---TTTTTCSS
T ss_pred CEEECCCCccccccHhhhhhcccCcEEE----ccCCcCc-ccchhhhhcccCccCE----EECcCCc-C---CCcchhhh
Confidence 9999999988899999999998 99887 4444444 3444444332 4442 2222211 1 11111223
Q ss_pred c-------cCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhc------
Q 042336 736 E-------KKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMS------ 802 (944)
Q Consensus 736 ~-------~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~------ 802 (944)
. .+.+|+.|+++.|.+.... ...+..+++|+.|++++|....+|.....
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp------------------~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFP------------------KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCC------------------THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred cccccccccCCCCCEEECcCCccCcCC------------------HHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 3 5568899999988655321 11223467899999999988788876543
Q ss_pred --CCCccEEEeeccCCCCcCCC-CC--CCCCcceeeecccccceEeCccccCccCccCccccccccccc---cccccccc
Q 042336 803 --LNKLKKLELSFCNKFEIMPP-LG--KLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDL---DEWEEWEN 874 (944)
Q Consensus 803 --l~~L~~L~L~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l---~~~~~~~~ 874 (944)
+++|+.|+|++|... .+|. +. .+++|+.|+|+++.- ..++.. ...+++|+.|.+.+. .++.....
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~~-----~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQ-----PLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCC-SSCCCG-----GGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCC-CCcChh-----hhcCCCCCEEECCCCcccccCccccc
Confidence 228999999999776 4554 54 899999999988752 112111 113444444444321 23444455
Q ss_pred cCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcch
Q 042336 875 EKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRIL 920 (944)
Q Consensus 875 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 920 (944)
.|..+..+++|+.|+|++|.. +.+|..+. ++|+.|++++|+..
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 666778899999999999975 88998765 89999999999764
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.7e-23 Score=250.60 Aligned_cols=331 Identities=15% Similarity=0.141 Sum_probs=242.4
Q ss_pred chhhccCCCCeeEEEEecCCcccccc-------------hhHHHHhh--cCCcccEEEeccCCCcccccccchhhhcccc
Q 042336 546 FPVFMFNAKKLRSLLIHNIPIEVSSS-------------PVLQVLFN--QFTCLRALKITRNSKENSIYEIPKEIQKLIH 610 (944)
Q Consensus 546 ~~~~~~~~~~Lr~L~l~~~~~~~~~~-------------~~l~~~~~--~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~ 610 (944)
+|..+.++++|+.|++.++....... ..++..+. ++++|++|+|++|.. ...+|..+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l---~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN---MTQLPDFLYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT---CCSCCGGGGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC---CccChHHHhCCCC
Confidence 67788999999999999987532000 01344344 999999999999985 6678999999999
Q ss_pred cceeccCccc-cc--ccCccccCCC-------cccEEEecCccCCcccCc--ccccCCCCceeeccccccccccccccCC
Q 042336 611 LRYFKLHWLE-IK--ELPDTCCELF-------NLQTIEIEGCYNLNRLPQ--GVGKLVNLRHLIFDVNFVEYMPKGIERL 678 (944)
Q Consensus 611 Lr~L~Ls~~~-i~--~lP~~i~~L~-------~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~lp~~i~~l 678 (944)
|++|+|++|. +. .+|..++++. +|++|++++|. +..+|. .++++++|++|+++.|.+..+| .++.+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L 594 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN 594 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence 9999999998 77 4898887776 99999999998 779999 9999999999999999888999 89999
Q ss_pred CCCCcCCceEecccccCCCCcccccccCcC-cccCCceEEEcCccCcCChhhhhhhhcccC--CCcCcEEEEeecCCCCc
Q 042336 679 TCLRTLSEFVVVSRSDKYGNKACNLGGLRQ-LNHLRGSLRIRGLRNVTDVHEAKIVELEKK--KNLLHLSLSFVKRTDEE 755 (944)
Q Consensus 679 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~ 755 (944)
++|+.|. ...|... ..+..+..+.+ |+.| .+.... +.... ..+... ++|+.|++++|.+.+..
T Consensus 595 ~~L~~L~----Ls~N~l~-~lp~~l~~l~~~L~~L----~Ls~N~-L~~lp----~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 595 VKLTDLK----LDYNQIE-EIPEDFCAFTDQVEGL----GFSHNK-LKYIP----NIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp SEESEEE----CCSSCCS-CCCTTSCEECTTCCEE----ECCSSC-CCSCC----SCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred CcceEEE----CcCCccc-cchHHHhhccccCCEE----ECcCCC-CCcCc----hhhhccccCCCCEEECcCCcCCCcc
Confidence 9999987 5555554 46666666666 6644 333211 11111 223333 45999999999765431
Q ss_pred hhhhhhhcCCCcccHHHHhccCC--CCCCCceEEEeeCCCCCCChhhh-cCCCccEEEeeccCCCCcCCC-C--------
Q 042336 756 DEEEEVTEGKNEVSHEAICEALR--PPPNLESLDVWKYRGETLPSWIM-SLNKLKKLELSFCNKFEIMPP-L-------- 823 (944)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~-l-------- 823 (944)
+ .++..+. ..++|+.|++++|....+|.++. .+++|+.|+|++|... .+|. +
T Consensus 661 p---------------~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 661 R---------------NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY 724 (876)
T ss_dssp S---------------SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred c---------------cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence 1 0111222 34589999999999889998876 7999999999999766 4443 2
Q ss_pred CCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecc------ccccc
Q 042336 824 GKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRD------CHKLK 897 (944)
Q Consensus 824 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~ 897 (944)
.++++|+.|+|++|. +..++..+. ...+++|+.| ++.++.... .|..+..+++|+.|+|++ |....
T Consensus 725 ~nl~~L~~L~Ls~N~-L~~lp~~l~---~~~l~~L~~L---~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNK-LTSLSDDFR---ATTLPYLSNM---DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp TTGGGCCEEECCSSC-CCCCCGGGS---TTTCTTCCEE---ECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred cccCCccEEECCCCC-CccchHHhh---hccCCCcCEE---EeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 234499999999885 333322111 0134455554 555554433 466677999999999987 55566
Q ss_pred CCCCCCCCCCCcCeEEEecCcc
Q 042336 898 SLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 898 ~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
.+|..+.++++|+.|++++|..
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC
T ss_pred cChHHHhcCCCCCEEECCCCCC
Confidence 7899999999999999999987
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.4e-23 Score=253.48 Aligned_cols=344 Identities=20% Similarity=0.161 Sum_probs=247.5
Q ss_pred CCCceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcc
Q 042336 529 SEEELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKL 608 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l 608 (944)
.....+++.+..+.+....+.+..+++|++|.+.++... ..++..+.++++|++|+|++|.. ...+|.. .+
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~--~l 268 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQF---VGPIPPL--PL 268 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC----SCHHHHTTTCSSCCEEECCSSCC---EESCCCC--CC
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC----CcccHHHhcCCCCCEEECCCCcc---cCccCcc--cc
Confidence 345677888877776653444788889999998887642 23556688888999999998874 2234443 78
Q ss_pred cccceeccCccccc-ccCccccCC-CcccEEEecCccCCcccCcccccCCCCceeeccccccc-ccccc-ccCCCCCCcC
Q 042336 609 IHLRYFKLHWLEIK-ELPDTCCEL-FNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVE-YMPKG-IERLTCLRTL 684 (944)
Q Consensus 609 ~~Lr~L~Ls~~~i~-~lP~~i~~L-~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~-~lp~~-i~~l~~L~~L 684 (944)
++|++|+|++|.+. .+|..+.++ ++|++|++++|.....+|..++++++|++|+++.|.+. .+|.. ++.+++|+.|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 88999999988887 888888775 88999999988855578888889999999999877765 77766 7888888888
Q ss_pred CceEecccccCCCCcccccccCc-CcccCCceEEEcCccCcCChhhhhhhhccc--CCCcCcEEEEeecCCCCchhhhhh
Q 042336 685 SEFVVVSRSDKYGNKACNLGGLR-QLNHLRGSLRIRGLRNVTDVHEAKIVELEK--KKNLLHLSLSFVKRTDEEDEEEEV 761 (944)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~~ 761 (944)
. ...|...+..+..+..+. +|+.| .+.... ........+.. +++|+.|+++.|.+.+.
T Consensus 349 ~----Ls~n~l~~~~p~~l~~l~~~L~~L----~Ls~N~----l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~------- 409 (768)
T 3rgz_A 349 D----LSFNEFSGELPESLTNLSASLLTL----DLSSNN----FSGPILPNLCQNPKNTLQELYLQNNGFTGK------- 409 (768)
T ss_dssp E----CCSSEEEECCCTTHHHHTTTCSEE----ECCSSE----EEEECCTTTTCSTTCCCCEEECCSSEEEEE-------
T ss_pred e----CcCCccCccccHHHHhhhcCCcEE----EccCCC----cCCCcChhhhhcccCCccEEECCCCccccc-------
Confidence 7 444444434555555554 45433 222110 00011112222 56788888887754432
Q ss_pred hcCCCcccHHHHhccCCCCCCCceEEEeeCCCC-CCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeeccccc
Q 042336 762 TEGKNEVSHEAICEALRPPPNLESLDVWKYRGE-TLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQS 839 (944)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~ 839 (944)
++..+..+++|+.|++++|... .+|..+..+++|+.|+|++|...+.+|. ++.+++|+.|++++|.-
T Consensus 410 -----------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 410 -----------IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp -----------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred -----------cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 3455667788999999988753 6788888899999999999987766665 77889999999987652
Q ss_pred ceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcc
Q 042336 840 VKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 840 l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
.+..+..|.+++.|+..++.++......|..+..+++|+.|+|++|.....+|..+..+++|+.|++++|+.
T Consensus 479 --------~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 479 --------TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp --------CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred --------cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 222334566666777777777776666677778899999999999987778898888999999999999875
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=3.2e-23 Score=246.34 Aligned_cols=328 Identities=16% Similarity=0.167 Sum_probs=242.6
Q ss_pred chhhccCCCCeeEEEEecCCcccc--cch-----------hHHHHhh--cCCcccEEEeccCCCcccccccchhhhcccc
Q 042336 546 FPVFMFNAKKLRSLLIHNIPIEVS--SSP-----------VLQVLFN--QFTCLRALKITRNSKENSIYEIPKEIQKLIH 610 (944)
Q Consensus 546 ~~~~~~~~~~Lr~L~l~~~~~~~~--~~~-----------~l~~~~~--~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~ 610 (944)
+|..+.++++|++|++.++..... ... .++..+. ++++|++|+|++|.. ...+|..++++++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN---LTKLPTFLKALPE 274 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT---CSSCCTTTTTCSS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC---CccChHHHhcCCC
Confidence 577788999999999999874320 000 0444466 999999999999985 5678999999999
Q ss_pred cceeccCccc-cc--ccCccccCC------CcccEEEecCccCCcccCc--ccccCCCCceeeccccccc-cccccccCC
Q 042336 611 LRYFKLHWLE-IK--ELPDTCCEL------FNLQTIEIEGCYNLNRLPQ--GVGKLVNLRHLIFDVNFVE-YMPKGIERL 678 (944)
Q Consensus 611 Lr~L~Ls~~~-i~--~lP~~i~~L------~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~-~lp~~i~~l 678 (944)
|++|+|++|. +. .+|..+++| ++|++|++++|. +..+|. .++++++|++|+++.|.+. .+| .++.+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 9999999998 87 599999887 999999999998 679999 8999999999999998888 899 89999
Q ss_pred CCCCcCCceEecccccCCCCcccccccCcC-cccCCceEEEcCccCcCChhhhhhhhccc--CCCcCcEEEEeecCCCCc
Q 042336 679 TCLRTLSEFVVVSRSDKYGNKACNLGGLRQ-LNHLRGSLRIRGLRNVTDVHEAKIVELEK--KKNLLHLSLSFVKRTDEE 755 (944)
Q Consensus 679 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~~~l~i~~l~~~~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~ 755 (944)
++|+.|. ...|... ..+..+..+.+ |+.| .+..-. +... ...+.. +++|+.|+++.|.+.+.
T Consensus 353 ~~L~~L~----L~~N~l~-~lp~~l~~l~~~L~~L----~Ls~N~-l~~l----p~~~~~~~l~~L~~L~Ls~N~l~~~- 417 (636)
T 4eco_A 353 IKLASLN----LAYNQIT-EIPANFCGFTEQVENL----SFAHNK-LKYI----PNIFDAKSVSVMSAIDFSYNEIGSV- 417 (636)
T ss_dssp EEESEEE----CCSSEEE-ECCTTSEEECTTCCEE----ECCSSC-CSSC----CSCCCTTCSSCEEEEECCSSCTTTT-
T ss_pred CCCCEEE----CCCCccc-cccHhhhhhcccCcEE----EccCCc-Cccc----chhhhhcccCccCEEECcCCcCCCc-
Confidence 9999887 4444333 34555666666 6644 332211 1111 122333 34899999999876653
Q ss_pred hhhhhhhcCCCcccHHHHhccCC-------CCCCCceEEEeeCCCCCCChhhh-cCCCccEEEeeccCCCCcCCC-C-C-
Q 042336 756 DEEEEVTEGKNEVSHEAICEALR-------PPPNLESLDVWKYRGETLPSWIM-SLNKLKKLELSFCNKFEIMPP-L-G- 824 (944)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~-l-~- 824 (944)
.+..+. ..++|+.|++++|....+|..+. .+++|+.|+|++|... .+|. . .
T Consensus 418 -----------------~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~ 479 (636)
T 4eco_A 418 -----------------DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD 479 (636)
T ss_dssp -----------------TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE
T ss_pred -----------------chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc
Confidence 233344 56799999999999888988765 5999999999999876 4543 2 2
Q ss_pred ------CCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeec------c
Q 042336 825 ------KLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIR------D 892 (944)
Q Consensus 825 ------~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~------~ 892 (944)
.+++|+.|+++++. +..++..+. ...+..|+..++.++.... .|..+..+++|+.|+|+ +
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~------~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNK-LTKLSDDFR------ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp TTEECTTGGGCCEEECCSSC-CCBCCGGGS------TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred ccccccccCCccEEECcCCc-CCccChhhh------hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 23499999999875 222222111 0144444555555555444 56667789999999995 4
Q ss_pred cccccCCCCCCCCCCCcCeEEEecCcc
Q 042336 893 CHKLKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 893 c~~l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
|.....+|..+.++++|++|++++|..
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC
Confidence 555678899999999999999999987
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=3.9e-22 Score=237.27 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=117.5
Q ss_pred CCCceEEEEEEeCCCCcchh-hccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhh
Q 042336 529 SEEELRHSMLVFGNEASFPV-FMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQ 606 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~ 606 (944)
.+..++++.+..+.+..++. .+.++++|++|++.++.... ..+..|.++++|++|+|++|. +..+ |..++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~----l~~~~p~~~~ 101 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNP----IQSFSPGSFS 101 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCC----CCCCCTTSST
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCc----ccccChhhcC
Confidence 45778999998888776544 67889999999999886432 224447889999999999998 6665 78899
Q ss_pred cccccceeccCcccccccC-ccccCCCcccEEEecCccCCc--ccCcccccCCCCceeeccccccccccc-cccCCCCCC
Q 042336 607 KLIHLRYFKLHWLEIKELP-DTCCELFNLQTIEIEGCYNLN--RLPQGVGKLVNLRHLIFDVNFVEYMPK-GIERLTCLR 682 (944)
Q Consensus 607 ~l~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~lp~-~i~~l~~L~ 682 (944)
++++|++|+|++|.+..+| ..++++.+|++|++++|. +. .+|..++++++|++|+++.|.+..++. .++.+++|+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 9999999999999998776 679999999999999998 54 578999999999999998887777643 466666665
Q ss_pred c
Q 042336 683 T 683 (944)
Q Consensus 683 ~ 683 (944)
.
T Consensus 181 ~ 181 (606)
T 3vq2_A 181 Q 181 (606)
T ss_dssp T
T ss_pred c
Confidence 3
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.4e-22 Score=232.98 Aligned_cols=132 Identities=18% Similarity=0.123 Sum_probs=76.9
Q ss_pred ccCCCCCCCceEEEeeCCCCC---CChhhhcCCCccEEEeeccCCCCcCCC--CCCCCCcceeeecccccceEeCccccC
Q 042336 775 EALRPPPNLESLDVWKYRGET---LPSWIMSLNKLKKLELSFCNKFEIMPP--LGKLPSLELLEVFALQSVKRVGDEFLG 849 (944)
Q Consensus 775 ~~l~~~~~L~~L~l~~~~~~~---lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~ 849 (944)
..+..+++|+.|++++|.... +|.++..+++|+.|++++|.....+|. +..+++|+.|++++|.- .+
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l--------~~ 413 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--------TD 413 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC--------CG
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC--------Cc
Confidence 344445556666665555442 233445556666666666555443332 45556666666655431 11
Q ss_pred ccCccC-ccccccccccccccccccccCCccccCcccceeeecccccccCCCCC-CCCCCCcCeEEEecCcc
Q 042336 850 IEIVAF-PKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQ-ILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 850 ~~~~~f-~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 919 (944)
..+..+ ++|+.| ++.++... ..|..+..+++|+.|++++|. ++.+|.. +..+++|++|++++|+.
T Consensus 414 ~~~~~l~~~L~~L---~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 414 TIFRCLPPRIKVL---DLHSNKIK-SIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGGGSCCTTCCEE---ECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred chhhhhcccCCEE---ECCCCccc-ccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCC
Confidence 111123 344444 44444332 344445688999999999985 6688876 77899999999998876
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=2.8e-22 Score=220.63 Aligned_cols=302 Identities=19% Similarity=0.216 Sum_probs=186.6
Q ss_pred CceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccc
Q 042336 531 EELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIH 610 (944)
Q Consensus 531 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~ 610 (944)
..++++.+..+.+..++ .+..+++|++|.+.++.... ++. +.++++|++|++++|. +..+| .+..+++
T Consensus 44 ~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~-----~~~-~~~l~~L~~L~L~~n~----i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITD-----ISP-LSNLVKLTNLYIGTNK----ITDIS-ALQNLTN 111 (347)
T ss_dssp TTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSC----CCCCG-GGTTCTT
T ss_pred ccccEEEEeCCccccch-hhhhcCCccEEEccCCcccc-----chh-hhcCCcCCEEEccCCc----ccCch-HHcCCCc
Confidence 44566666665555433 35556666666666654321 112 5666666666666665 44443 3666666
Q ss_pred cceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEec
Q 042336 611 LRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVV 690 (944)
Q Consensus 611 Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~ 690 (944)
|++|++++|.+..+|. +..+++|++|++++|..+..++ .+..+++|++|+++.+.+..++. ++.+++|+.|. .
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~----l 184 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS----L 184 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE----C
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE----c
Confidence 6666666666666654 6666666666666665444433 36666666666666555555543 45555555554 1
Q ss_pred ccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccH
Q 042336 691 SRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSH 770 (944)
Q Consensus 691 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 770 (944)
..+. +... ..+..+++|+.|+++.|.+.+.
T Consensus 185 ~~n~-----------------------------l~~~-----~~~~~l~~L~~L~l~~n~l~~~---------------- 214 (347)
T 4fmz_A 185 NYNQ-----------------------------IEDI-----SPLASLTSLHYFTAYVNQITDI---------------- 214 (347)
T ss_dssp TTSC-----------------------------CCCC-----GGGGGCTTCCEEECCSSCCCCC----------------
T ss_pred cCCc-----------------------------cccc-----ccccCCCccceeecccCCCCCC----------------
Confidence 1110 0110 1145567788888887755432
Q ss_pred HHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCccccCc
Q 042336 771 EAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGI 850 (944)
Q Consensus 771 ~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 850 (944)
..+..+++|+.|++++|....+|. +..+++|+.|++++|.... ++.+..+++|++|++++|. +..+
T Consensus 215 ----~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~------- 280 (347)
T 4fmz_A 215 ----TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDI------- 280 (347)
T ss_dssp ----GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCC-------
T ss_pred ----chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCC-------
Confidence 114566788888888888777766 7788889999998886543 5667888889999988774 2221
Q ss_pred cCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcc
Q 042336 851 EIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 851 ~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
..|..+..|+..++.++......+..+..+++|+.|++++|+ +..++. +..+++|+.|++++|+.
T Consensus 281 --~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 281 --SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp --GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred --hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 123334444444455444433444445678999999999997 555554 67899999999999975
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.3e-22 Score=232.36 Aligned_cols=362 Identities=15% Similarity=0.132 Sum_probs=204.9
Q ss_pred CCCceEEEEEEeCCCCcc-hhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhh
Q 042336 529 SEEELRHSMLVFGNEASF-PVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQ 606 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~ 606 (944)
.+..++++.+..+.+... +..+..+++|++|.+.++.... ...+..|.++++|++|+|++|. +..+ |..++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~---~i~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~ 100 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL---VIRNNTFRGLSSLIILKLDYNQ----FLQLETGAFN 100 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC---EECTTTTTTCTTCCEEECTTCT----TCEECTTTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc---eECcccccccccCCEEeCCCCc----cCccChhhcc
Confidence 345666777766665543 4456667777777776664311 1112235666777777777766 4433 56667
Q ss_pred cccccceeccCcccccc-cCcc--ccCCCcccEEEecCccCCccc-Ccc-cccCCCCceeecccccccccc-ccccCC--
Q 042336 607 KLIHLRYFKLHWLEIKE-LPDT--CCELFNLQTIEIEGCYNLNRL-PQG-VGKLVNLRHLIFDVNFVEYMP-KGIERL-- 678 (944)
Q Consensus 607 ~l~~Lr~L~Ls~~~i~~-lP~~--i~~L~~L~~L~L~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~lp-~~i~~l-- 678 (944)
++++|++|+|++|.+.. .|.. ++++++|++|++++|. +..+ |.. +.++++|++|+++.|.+..++ ..+..+
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 77777777777776653 3433 6667777777777766 4333 444 566777777777666555443 233333
Q ss_pred CCCCcCCceEecccccCCCCccccc-----ccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCC
Q 042336 679 TCLRTLSEFVVVSRSDKYGNKACNL-----GGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTD 753 (944)
Q Consensus 679 ~~L~~L~~~~~~~~~~~~~~~~~~l-----~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 753 (944)
.+|+.|. ...+.........+ ..+..+..|+ .+.+.+.. +...............+|+.|.++.+....
T Consensus 180 ~~L~~L~----l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 180 KHFTLLR----LSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp CEEEEEE----CTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred ccccccc----cccCcccccchhhccccccccccccceee-eEecCCCc-ccccchhhhhccccccceeeEeeccccccc
Confidence 2333333 22221111111000 0011111111 22222111 111001111111223556666665553222
Q ss_pred CchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCC-CChhhhcCCCccEEEeeccCCCCcCC-CCCCCCCcce
Q 042336 754 EEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGET-LPSWIMSLNKLKKLELSFCNKFEIMP-PLGKLPSLEL 831 (944)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 831 (944)
...... ..... ....... ..+++|+.|++++|.... .|.++..+++|+.|+|++|...+..+ .++.+++|++
T Consensus 254 ~~~~~~----~~~~~-~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 254 SSFGHT----NFKDP-DNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp CCTTCC----SSCCC-CTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccchh----hhccC-ccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 100000 00000 0000000 124689999999988654 57778899999999999998776655 4889999999
Q ss_pred eeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCC-CCCCCCcC
Q 042336 832 LEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQ-ILGNTTLQ 910 (944)
Q Consensus 832 L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~ 910 (944)
|+++++. +..+ .+..|..+..|+..++.++......+..+..+++|+.|++++|. ++.+|.. +..+++|+
T Consensus 328 L~Ls~N~-l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 328 LNLSQNF-LGSI-------DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp EECCSSC-CCEE-------CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCC
T ss_pred EECCCCc-cCCc-------ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCccc
Confidence 9999875 2222 12345556666666777776655556667889999999999985 6667754 57899999
Q ss_pred eEEEecCcc
Q 042336 911 MLKIYNCRI 919 (944)
Q Consensus 911 ~L~l~~c~~ 919 (944)
.|++++|+.
T Consensus 399 ~L~l~~N~l 407 (455)
T 3v47_A 399 KIWLHTNPW 407 (455)
T ss_dssp EEECCSSCB
T ss_pred EEEccCCCc
Confidence 999999876
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=4e-22 Score=237.15 Aligned_cols=361 Identities=15% Similarity=0.086 Sum_probs=215.1
Q ss_pred CCCceEEEEEEeCCCCcc-hhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccc-cchhhh
Q 042336 529 SEEELRHSMLVFGNEASF-PVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYE-IPKEIQ 606 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~-lp~~i~ 606 (944)
.+..++++.+..+.+..+ +..+..+++|++|++.++.... ..+..|.++++|++|+|++|. +.. .|..++
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~ 102 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANP----LIFMAETALS 102 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCC----CSEECTTTTS
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCc----ccccChhhhc
Confidence 456789999999888765 5578899999999999986432 234458899999999999998 555 477899
Q ss_pred cccccceeccCccccccc-CccccCCCcccEEEecCccCCcccC-cccccCCCCceeecccccccccc-ccccCCCCCCc
Q 042336 607 KLIHLRYFKLHWLEIKEL-PDTCCELFNLQTIEIEGCYNLNRLP-QGVGKLVNLRHLIFDVNFVEYMP-KGIERLTCLRT 683 (944)
Q Consensus 607 ~l~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~lp-~~i~~l~~L~~ 683 (944)
++++|++|++++|.+..+ |..++++++|++|++++|. +..++ ..+..+++|++|+++.|.+..++ ..++.+++|+.
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 999999999999999877 6779999999999999998 65542 34455999999999888888774 45788888883
Q ss_pred CCceEecccccCCCCcccccccCcCcccCC-------------------ceEEEcCccCcC-------------------
Q 042336 684 LSEFVVVSRSDKYGNKACNLGGLRQLNHLR-------------------GSLRIRGLRNVT------------------- 725 (944)
Q Consensus 684 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~-------------------~~l~i~~l~~~~------------------- 725 (944)
+.. ....|...+..+..+.. ..|+.+. ..+.+..+....
T Consensus 182 l~L--~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 182 LSL--NLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp EEE--ECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred eEE--ecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 321 02222222211111110 1111000 000000000000
Q ss_pred ------ChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCC-Ch
Q 042336 726 ------DVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETL-PS 798 (944)
Q Consensus 726 ------~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~ 798 (944)
.........+..+++|+.|++++|.+.. ++..+..+++|+.|++++|....+ |.
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------------------LPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------------------CCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccCC-------------------CChhhcccccCCEEECccCCcCcCchh
Confidence 0000111224455666666666664432 233445555666666666554443 33
Q ss_pred hhhcCCCccEEEeeccCCCCcCCC--CCCCCCcceeeecccccceEe--C----------------ccccCccCccCccc
Q 042336 799 WIMSLNKLKKLELSFCNKFEIMPP--LGKLPSLELLEVFALQSVKRV--G----------------DEFLGIEIVAFPKL 858 (944)
Q Consensus 799 ~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~--~----------------~~~~~~~~~~f~~L 858 (944)
.+..+++|+.|++++|.....++. ++.+++|++|+++++.-.... . +.+....+..|..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 455556666666666554433332 455556666655544311110 0 00011112234444
Q ss_pred cccccccccccccccccC-CccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcch
Q 042336 859 KHLIFVDLDEWEEWENEK-NDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRIL 920 (944)
Q Consensus 859 ~~L~l~~l~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 920 (944)
..|+..++.++......+ ..+..+++|+.|++++|......|..+..+++|++|++++|+.-
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 444444554444333222 22557788888888888755556666778888888888888753
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.1e-21 Score=224.83 Aligned_cols=324 Identities=19% Similarity=0.233 Sum_probs=183.1
Q ss_pred CceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccc
Q 042336 531 EELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIH 610 (944)
Q Consensus 531 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~ 610 (944)
..++.+.+..+.+..++ .+..+++|++|++.++.... ++. +.++++|++|++++|. +..++. ++++++
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~-----~~~-~~~l~~L~~L~l~~n~----l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD-----ITP-LKNLTKLVDILMNNNQ----IADITP-LANLTN 113 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSC----CCCCGG-GTTCTT
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC-----chh-hhccccCCEEECCCCc----cccChh-hcCCCC
Confidence 34566666665555443 35567777777777665321 122 5667777777777776 555555 677777
Q ss_pred cceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEec
Q 042336 611 LRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVV 690 (944)
Q Consensus 611 Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~ 690 (944)
|++|++++|.+..+|. +.++++|++|++++|. +..+|. +..+++|++|++++ .+..++. ++.+++|+.|+ .
T Consensus 114 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~----l 184 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLD----I 184 (466)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEE----C
T ss_pred CCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCC-cccCchh-hccCCCCCEEE----C
Confidence 7777777777766654 6777777777777765 555542 55566666655532 2222222 44455555444 2
Q ss_pred ccccCCCCcccccccCcCcccC-------------------CceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecC
Q 042336 691 SRSDKYGNKACNLGGLRQLNHL-------------------RGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKR 751 (944)
Q Consensus 691 ~~~~~~~~~~~~l~~l~~L~~L-------------------~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 751 (944)
..+..... ..+..+++|+.| + .+.+.+.. +.. ...+..+++|+.|++++|.+
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~-~L~l~~n~-l~~-----~~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLD-ELSLNGNQ-LKD-----IGTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCC-EEECCSSC-CCC-----CGGGGGCTTCSEEECCSSCC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCC-EEECCCCC-ccc-----chhhhcCCCCCEEECCCCcc
Confidence 22221110 112222222211 1 12221110 111 02334445555555555543
Q ss_pred CCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcce
Q 042336 752 TDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLEL 831 (944)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 831 (944)
.+. ..+..+++|+.|++++|....+|. +..+++|+.|++++|...+ ++.++.+++|+.
T Consensus 256 ~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~ 313 (466)
T 1o6v_A 256 SNL--------------------APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-ISPISNLKNLTY 313 (466)
T ss_dssp CCC--------------------GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSE
T ss_pred ccc--------------------hhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCE
Confidence 321 114566778888888887666665 6678888888888876544 444777888888
Q ss_pred eeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCe
Q 042336 832 LEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQM 911 (944)
Q Consensus 832 L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 911 (944)
|++++|. +.... ....+++|+.|.+.+ +..... ..+..+++|+.|++++|+.....| +..+++|+.
T Consensus 314 L~L~~n~-l~~~~------~~~~l~~L~~L~l~~---n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 314 LTLYFNN-ISDIS------PVSSLTKLQRLFFYN---NKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp EECCSSC-CSCCG------GGGGCTTCCEEECCS---SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred EECcCCc-CCCch------hhccCccCCEeECCC---CccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 8888764 21111 012455555555443 332222 235678999999999987544344 678899999
Q ss_pred EEEecCcch
Q 042336 912 LKIYNCRIL 920 (944)
Q Consensus 912 L~l~~c~~l 920 (944)
|++++|+..
T Consensus 380 L~l~~n~~~ 388 (466)
T 1o6v_A 380 LGLNDQAWT 388 (466)
T ss_dssp EECCCEEEE
T ss_pred EeccCCccc
Confidence 999998763
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.9e-21 Score=227.07 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=88.5
Q ss_pred EEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccc
Q 042336 534 RHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLR 612 (944)
Q Consensus 534 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr 612 (944)
+++.+..+.+..+|..+. ++|+.|++.++.... ..+..|.++++|++|+|++|. +..+ |..++++++|+
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNR----IRSLDFHVFLFNQDLE 103 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCC----CCEECTTTTTTCTTCC
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccc----cChhhhccCCCccEEECCCCC----CCcCCHHHhCCCCCCC
Confidence 556666666655555443 677888877776432 112336777788888888777 5554 56677788888
Q ss_pred eeccCcccccccCccccCCCcccEEEecCccCCccc--CcccccCCCCceeeccccccccccccccCCCCC
Q 042336 613 YFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRL--PQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCL 681 (944)
Q Consensus 613 ~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L 681 (944)
+|+|++|.+..+|.. .+.+|++|++++|. +..+ |..++++++|++|+++.|.+.. ..+..+++|
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L 169 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHL 169 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTS
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhc
Confidence 888888887777766 67788888888776 5554 3677778888888877666543 234444444
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=234.12 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=116.8
Q ss_pred CCCceEEEEEEeCCCCcch-hhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhh
Q 042336 529 SEEELRHSMLVFGNEASFP-VFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQ 606 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~ 606 (944)
.+..++++.+..+.+..++ ..+..+++|++|++.++.... ..+..|.++++|++|+|++|. +..+| ..++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~ 97 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNP----IQSLALGAFS 97 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCC----CCEECTTTTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCc----CCccCHhhhc
Confidence 4567899999988877643 467889999999999986432 223447899999999999998 66655 7899
Q ss_pred cccccceeccCcccccccCc-cccCCCcccEEEecCccCCc--ccCcccccCCCCceeecccccccccc-ccccCCCCC
Q 042336 607 KLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLN--RLPQGVGKLVNLRHLIFDVNFVEYMP-KGIERLTCL 681 (944)
Q Consensus 607 ~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~lp-~~i~~l~~L 681 (944)
++.+|++|++++|.+..+|. .++++.+|++|++++|. +. .+|..++++++|++|+++.|.+..++ ..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 99999999999999998876 59999999999999997 54 47899999999999999888777664 346666555
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2.3e-21 Score=233.90 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=130.1
Q ss_pred CCCceEEEEEEeCCCCcchh-hccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccch-hhh
Q 042336 529 SEEELRHSMLVFGNEASFPV-FMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPK-EIQ 606 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~-~i~ 606 (944)
.+..++++.+..+.+..++. .+..+++|++|++.++.... ..+..|.++++|++|+|++|. +..+|. .++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~----l~~l~~~~~~ 94 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNE----LSQLSDKTFA 94 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSC----CCCCCTTTTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCc----cCccChhhhc
Confidence 45789999999988776554 58889999999999886432 224458899999999999998 778886 699
Q ss_pred cccccceeccCcccccccC-ccccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccccccc---ccCCCCCC
Q 042336 607 KLIHLRYFKLHWLEIKELP-DTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKG---IERLTCLR 682 (944)
Q Consensus 607 ~l~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~---i~~l~~L~ 682 (944)
++++|++|+|++|.+..+| ..++++++|++|++++|......|..++++++|++|+++.|.+..++.. ...+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 9999999999999998776 5699999999999999985455567789999999999988887777653 23457787
Q ss_pred cCCceEecccccCCCCcccccccCcCc
Q 042336 683 TLSEFVVVSRSDKYGNKACNLGGLRQL 709 (944)
Q Consensus 683 ~L~~~~~~~~~~~~~~~~~~l~~l~~L 709 (944)
.|+ ...|...+..+..+..+.+|
T Consensus 175 ~L~----L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 175 KLE----LSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp EEE----CTTCCCCCBCTTGGGGSSEE
T ss_pred EEE----CCCCcccccChhhhhhhhhh
Confidence 776 44444444334444444443
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.2e-21 Score=233.06 Aligned_cols=359 Identities=17% Similarity=0.139 Sum_probs=220.0
Q ss_pred EEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhccccccee
Q 042336 536 SMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYF 614 (944)
Q Consensus 536 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L 614 (944)
+.....+...+|..+. ++|++|++.++.... ..+..|.++++|++|+|++|. +..+ |..++++++|++|
T Consensus 16 ~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~----l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCE----IETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp EECTTSCCSSCCTTSC--TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEE
T ss_pred eEccCCCcccCCCCCC--CCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCc----ccccCHHHhhchhhcCEe
Confidence 3333444555665543 899999999987532 123348899999999999998 6665 6679999999999
Q ss_pred ccCccccccc-CccccCCCcccEEEecCccCCcccC-cccccCCCCceeeccccccc--cccccccCCCCCCcCCceEec
Q 042336 615 KLHWLEIKEL-PDTCCELFNLQTIEIEGCYNLNRLP-QGVGKLVNLRHLIFDVNFVE--YMPKGIERLTCLRTLSEFVVV 690 (944)
Q Consensus 615 ~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~~~~~~ 690 (944)
+|++|.+..+ |..++++.+|++|++++|. +..+| ..++++++|++|+++.|.+. .+|..++++++|++|+ .
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~----L 160 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD----L 160 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE----C
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE----c
Confidence 9999999877 8889999999999999998 66665 77999999999999988877 4788999999999997 4
Q ss_pred ccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCc-hhhhh---------
Q 042336 691 SRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEE-DEEEE--------- 760 (944)
Q Consensus 691 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~--------- 760 (944)
..|...+..+..++.+.+|+..-..+.+..- .+.... .......+|+.|++++|.+.+.. +....
T Consensus 161 s~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~ 235 (606)
T 3vq2_A 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQ----DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235 (606)
T ss_dssp CSSCCCEECTTTTHHHHHCTTCCCEEECTTC-CCCEEC----TTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEE
T ss_pred cCCcceecChhhhhhhhccccccceeeccCC-CcceeC----cccccCceeeeeeccCCccchhHHHHHhcccccccccc
Confidence 5554444344455555555431112222211 011110 01111124555555555322100 00000
Q ss_pred ------------------hhcC------------CCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEE
Q 042336 761 ------------------VTEG------------KNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLE 810 (944)
Q Consensus 761 ------------------~~~~------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 810 (944)
.... .........+. +..+++|+.|+++++....+| ++..+++|+.|+
T Consensus 236 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~ 313 (606)
T 3vq2_A 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLS 313 (606)
T ss_dssp EEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEE
T ss_pred ccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEE
Confidence 0000 00000011122 555678888888888777777 667778888888
Q ss_pred eeccCCCCcCCCCCCCCCcceeeecccccceEeCc--------------cccCc--cCccCccccccccccccccccccc
Q 042336 811 LSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGD--------------EFLGI--EIVAFPKLKHLIFVDLDEWEEWEN 874 (944)
Q Consensus 811 L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~--------------~~~~~--~~~~f~~L~~L~l~~l~~~~~~~~ 874 (944)
+++|.. +.+|.+ .+++|+.|.+.++..+..... .+.+. .+..|..+..|+..++.++....
T Consensus 314 l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~- 390 (606)
T 3vq2_A 314 IIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII- 390 (606)
T ss_dssp EESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-
T ss_pred cccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-
Confidence 888876 566666 777777777777643322110 00000 01112222223333333332211
Q ss_pred cCCccccCcccceeeecccccccCCC-CCCCCCCCcCeEEEecCcc
Q 042336 875 EKNDITIMPQLNSLEIRDCHKLKSLP-HQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 875 ~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~ 919 (944)
.+..+..+++|+.|++++|......| ..+..+++|+.|++++|..
T Consensus 391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 23445677888888888876555445 4567788888888888765
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=220.86 Aligned_cols=308 Identities=21% Similarity=0.202 Sum_probs=178.5
Q ss_pred eCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccceeccCc
Q 042336 540 FGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHW 618 (944)
Q Consensus 540 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~ 618 (944)
...+..+|..+ .++++.|++.++.... ..+..|.++++|++|+|++|. +..+ |..++++++|++|+|++
T Consensus 20 ~~~l~~ip~~~--~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 20 RKRFVAVPEGI--PTETRLLDLGKNRIKT----LNQDEFASFPHLEELELNENI----VSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp SCCCSSCCSCC--CTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECCS
T ss_pred CCCcCcCCCCC--CCCCcEEECCCCccce----ECHhHccCCCCCCEEECCCCc----cCEeChhhhhCCccCCEEECCC
Confidence 33444445433 3678888888876432 113347788888888888887 5554 67788888888888888
Q ss_pred ccccccCcc-ccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccccc-ccccCCCCCCcCCceEecccccCC
Q 042336 619 LEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMP-KGIERLTCLRTLSEFVVVSRSDKY 696 (944)
Q Consensus 619 ~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~ 696 (944)
|.+..+|.. +.++++|++|+|++|......|..+.++++|++|+++.|.+..++ ..+..+++|+.|. ...|...
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~ 165 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT----LEKCNLT 165 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE----EESCCCS
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE----CCCCcCc
Confidence 888877764 678888888888888744444667888888888888777776654 3577777777776 3333333
Q ss_pred CCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhcc
Q 042336 697 GNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEA 776 (944)
Q Consensus 697 ~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (944)
......+..+.+|+.| .+.... +. ......+..+++|+.|+++.|..... ++..
T Consensus 166 ~~~~~~l~~l~~L~~L----~l~~n~-i~---~~~~~~~~~l~~L~~L~l~~~~~~~~------------------~~~~ 219 (477)
T 2id5_A 166 SIPTEALSHLHGLIVL----RLRHLN-IN---AIRDYSFKRLYRLKVLEISHWPYLDT------------------MTPN 219 (477)
T ss_dssp SCCHHHHTTCTTCCEE----EEESCC-CC---EECTTCSCSCTTCCEEEEECCTTCCE------------------ECTT
T ss_pred ccChhHhcccCCCcEE----eCCCCc-Cc---EeChhhcccCcccceeeCCCCccccc------------------cCcc
Confidence 3222234444444422 222110 00 01112345566677777766533221 1222
Q ss_pred CCCCCCCceEEEeeCCCCCCCh-hhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccceEeCccccCccCcc
Q 042336 777 LRPPPNLESLDVWKYRGETLPS-WIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSVKRVGDEFLGIEIVA 854 (944)
Q Consensus 777 l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 854 (944)
.....+|+.|++++|....+|. .+..+++|+.|+|++|......+. +..+++|+.|.|.++. +.. ..+..
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-------~~~~~ 291 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAV-------VEPYA 291 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSE-------ECTTT
T ss_pred cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cce-------ECHHH
Confidence 2233467777777776666663 355667777777777664433332 5666777777776553 111 11223
Q ss_pred CccccccccccccccccccccCCccccCcccceeeeccccc
Q 042336 855 FPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHK 895 (944)
Q Consensus 855 f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 895 (944)
|..+..|+.+++.++......+..+..+++|+.|+|++|+.
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 44444444444444433333333344556666666666553
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.4e-21 Score=216.65 Aligned_cols=305 Identities=17% Similarity=0.158 Sum_probs=216.8
Q ss_pred CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcccccccC-cccc
Q 042336 552 NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELP-DTCC 629 (944)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP-~~i~ 629 (944)
.+++++.|.+.++.... ..+.+|.++++|++|+|++|. +..++ ..++.+++|++|+|++|.+..+| ..++
T Consensus 43 ~l~~l~~l~l~~~~l~~----l~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK----LPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCEESE----ECTHHHHHCCCCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCchhh----CChhHhcccccCcEEECCCCc----ccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 46888999988876422 223447888999999999988 66665 47888999999999999988665 4478
Q ss_pred CCCcccEEEecCccCCcccCccc-ccCCCCceeeccccccccccc-cccCCCCCCcCCceEecccccCCCCcccccccCc
Q 042336 630 ELFNLQTIEIEGCYNLNRLPQGV-GKLVNLRHLIFDVNFVEYMPK-GIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLR 707 (944)
Q Consensus 630 ~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 707 (944)
++++|++|++++|. +..+|..+ .++++|++|+++.|.+..++. .++.+++|++|. ...|..... .+..++
T Consensus 115 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~~~---~~~~l~ 186 (390)
T 3o6n_A 115 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ----LSSNRLTHV---DLSLIP 186 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE----CCSSCCSBC---CGGGCT
T ss_pred CCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE----CCCCcCCcc---cccccc
Confidence 99999999999987 77888764 889999999998888877754 478888888886 344333321 233444
Q ss_pred CcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEE
Q 042336 708 QLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLD 787 (944)
Q Consensus 708 ~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 787 (944)
+|+.+ .+..- . ...+....+|+.|++++|.+... + ...+++|+.|+
T Consensus 187 ~L~~L----~l~~n-~--------l~~~~~~~~L~~L~l~~n~l~~~-------------------~--~~~~~~L~~L~ 232 (390)
T 3o6n_A 187 SLFHA----NVSYN-L--------LSTLAIPIAVEELDASHNSINVV-------------------R--GPVNVELTILK 232 (390)
T ss_dssp TCSEE----ECCSS-C--------CSEEECCSSCSEEECCSSCCCEE-------------------E--CCCCSSCCEEE
T ss_pred cccee----ecccc-c--------ccccCCCCcceEEECCCCeeeec-------------------c--ccccccccEEE
Confidence 44322 22211 0 11233456899999988855431 1 12347899999
Q ss_pred EeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccceEeCccccCccCccCccccccccccc
Q 042336 788 VWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDL 866 (944)
Q Consensus 788 l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l 866 (944)
+++|..... .++..+++|+.|+|++|...+..|. ++.+++|++|+++++. +..++.. ...+|+|+.|.+.+
T Consensus 233 l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~~~l~~L~~L~L~~- 304 (390)
T 3o6n_A 233 LQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----GQPIPTLKVLDLSH- 304 (390)
T ss_dssp CCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS-----SSCCTTCCEEECCS-
T ss_pred CCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc-----cCCCCCCCEEECCC-
Confidence 999987665 6788999999999999987765454 8889999999999875 3332211 12456666665544
Q ss_pred cccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcch
Q 042336 867 DEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRIL 920 (944)
Q Consensus 867 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 920 (944)
+... ..+..+..+++|+.|++++|+ +..+| +..+++|+.|++++|+.-
T Consensus 305 --n~l~-~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 305 --NHLL-HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp --SCCC-CCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred --Ccce-ecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCcc
Confidence 3322 233345678999999999997 56666 567899999999999873
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=4.1e-21 Score=228.48 Aligned_cols=134 Identities=17% Similarity=0.132 Sum_probs=65.4
Q ss_pred CCCCCCCceEEEeeCCCCC-CChhhhcCCCccEEEeeccCCCCc-C---CCCCCCCCcceeeecccccceEeCccccCcc
Q 042336 777 LRPPPNLESLDVWKYRGET-LPSWIMSLNKLKKLELSFCNKFEI-M---PPLGKLPSLELLEVFALQSVKRVGDEFLGIE 851 (944)
Q Consensus 777 l~~~~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~L~~~~~~~~-l---~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 851 (944)
+..+++|+.|++++|.... .|.++..+++|+.|+|++|...+. + ..++.+++|++|++++|. +.. ..
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-------~~ 492 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSS-------ID 492 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCE-------EC
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCc-------cC
Confidence 3344455555555544322 233444555555555555543321 1 114445555555555443 111 11
Q ss_pred CccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcc
Q 042336 852 IVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 852 ~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
+..|..++.|+..+++++......+..+..+++| .|++++|......|..+..+++|+.|++++||.
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 2234444445555555554444444445556666 666666654333334445566777777777665
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=221.98 Aligned_cols=294 Identities=20% Similarity=0.224 Sum_probs=221.8
Q ss_pred CcccEEEeccCCCccccccc-chhhhcccccceeccCccccccc-CccccCCCcccEEEecCccCCcccCcc-cccCCCC
Q 042336 582 TCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKEL-PDTCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNL 658 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L 658 (944)
+.|++|+|++|. +..+ |..+.++++|++|+|++|.+..+ |..++++++|++|+|++|. +..+|.. +.++++|
T Consensus 32 ~~l~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNR----IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCCc----cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCC
Confidence 579999999998 6666 56899999999999999999866 7789999999999999998 7788765 6899999
Q ss_pred ceeecccccccccc-ccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhccc
Q 042336 659 RHLIFDVNFVEYMP-KGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEK 737 (944)
Q Consensus 659 ~~L~l~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 737 (944)
++|+++.|.+..++ ..+..+++|+.|. ...|......+..+..+.+|+.| .+... .+.. .....+..
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~~~~l~~L~~L----~l~~n-~l~~---~~~~~l~~ 174 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLE----VGDNDLVYISHRAFSGLNSLEQL----TLEKC-NLTS---IPTEALSH 174 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEE----ECCTTCCEECTTSSTTCTTCCEE----EEESC-CCSS---CCHHHHTT
T ss_pred CEEECCCCccccCChhHccccccCCEEE----CCCCccceeChhhccCCCCCCEE----ECCCC-cCcc---cChhHhcc
Confidence 99999988887764 4688899999987 44554444444556666666644 34332 1111 11234677
Q ss_pred CCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCC-CCCCChhhhcCCCccEEEeeccCC
Q 042336 738 KKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYR-GETLPSWIMSLNKLKKLELSFCNK 816 (944)
Q Consensus 738 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~~ 816 (944)
+++|+.|+++.|.+... ....+..+++|+.|+++++. ...+|.......+|+.|+|++|..
T Consensus 175 l~~L~~L~l~~n~i~~~------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAI------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp CTTCCEEEEESCCCCEE------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred cCCCcEEeCCCCcCcEe------------------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence 89999999999865432 13456778999999999976 345666666677999999999976
Q ss_pred CCcCC--CCCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccc
Q 042336 817 FEIMP--PLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCH 894 (944)
Q Consensus 817 ~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 894 (944)
.. +| .+..+++|+.|+|+++. +..+. ...|..+..|+.+++.++......+..+..+++|+.|+|++|.
T Consensus 237 ~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 237 TA-VPYLAVRHLVYLRFLNLSYNP-ISTIE-------GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CS-CCHHHHTTCTTCCEEECCSSC-CCEEC-------TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred cc-cCHHHhcCccccCeeECCCCc-CCccC-------hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 54 45 27889999999999876 33222 2245555666666666666655666667789999999999995
Q ss_pred cccCCCCC-CCCCCCcCeEEEecCcch
Q 042336 895 KLKSLPHQ-ILGNTTLQMLKIYNCRIL 920 (944)
Q Consensus 895 ~l~~lp~~-~~~l~~L~~L~l~~c~~l 920 (944)
++.+|.. +..+++|+.|++++|+..
T Consensus 308 -l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 308 -LTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp -CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred -CceeCHhHcCCCcccCEEEccCCCcc
Confidence 6667654 578999999999998863
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=4.3e-21 Score=211.10 Aligned_cols=282 Identities=17% Similarity=0.156 Sum_probs=202.5
Q ss_pred CCCceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcc
Q 042336 529 SEEELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKL 608 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l 608 (944)
....++++.+..+.+..++. +..+++|++|.+.++.... ++ .+.++++|++|++++|. +..+|. +..+
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-----~~-~~~~l~~L~~L~l~~n~----i~~~~~-~~~l 131 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-----IS-ALQNLTNLRELYLNEDN----ISDISP-LANL 131 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----CG-GGTTCTTCSEEECTTSC----CCCCGG-GTTC
T ss_pred hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-----ch-HHcCCCcCCEEECcCCc----ccCchh-hccC
Confidence 35678999999988876655 8899999999999987432 23 28899999999999998 777776 8999
Q ss_pred cccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceE
Q 042336 609 IHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFV 688 (944)
Q Consensus 609 ~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~ 688 (944)
++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|+++.|.+..++. +..+++|+.|.
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~--- 205 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFT--- 205 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEE---
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceee---
Confidence 99999999999755445569999999999999998 666665 8999999999999888887765 66677777665
Q ss_pred ecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcc
Q 042336 689 VVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEV 768 (944)
Q Consensus 689 ~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 768 (944)
...+.... . ..+..+++|+.|++++|.+...
T Consensus 206 -l~~n~l~~-----------------------------~-----~~~~~~~~L~~L~l~~n~l~~~-------------- 236 (347)
T 4fmz_A 206 -AYVNQITD-----------------------------I-----TPVANMTRLNSLKIGNNKITDL-------------- 236 (347)
T ss_dssp -CCSSCCCC-----------------------------C-----GGGGGCTTCCEEECCSSCCCCC--------------
T ss_pred -cccCCCCC-----------------------------C-----chhhcCCcCCEEEccCCccCCC--------------
Confidence 22211100 0 1144566788888888755432
Q ss_pred cHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCcccc
Q 042336 769 SHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFL 848 (944)
Q Consensus 769 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 848 (944)
. .+..+++|+.|++++|....+ ..+..+++|+.|++++|...+ ++.+..+++|+.|++++|.- .
T Consensus 237 -----~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l-~------- 300 (347)
T 4fmz_A 237 -----S-PLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQL-G------- 300 (347)
T ss_dssp -----G-GGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC-C-------
T ss_pred -----c-chhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcC-C-------
Confidence 1 156677888888888876665 456778888888888886544 46677888888888887751 1
Q ss_pred CccCccCccccccccccccccccccccCCccccCcccceeeeccccc
Q 042336 849 GIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHK 895 (944)
Q Consensus 849 ~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 895 (944)
...+..|..+..|+..++.++......+ +..+++|+.|++++|+.
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 1111223334444444444444333332 56899999999999863
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=3.4e-21 Score=226.26 Aligned_cols=377 Identities=13% Similarity=0.107 Sum_probs=218.3
Q ss_pred CCceEEEEEEeCCCCcc-hhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccch-hhhc
Q 042336 530 EEELRHSMLVFGNEASF-PVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPK-EIQK 607 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~-~i~~ 607 (944)
...++++.+..+.+... +..+..+++|++|++.++.... ..+..|.++++|++|+|++|. +..+|. .+++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~ 96 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNH----LSSLSSSWFGP 96 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSC----CCSCCHHHHTT
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCc----cCccCHHHhcc
Confidence 46788999988887664 4568889999999999987532 223447889999999999998 666664 4899
Q ss_pred ccccceeccCcccccc--cCccccCCCcccEEEecCccCCcccC-cccccCCCCceeecccccccc-ccccccCCCCCCc
Q 042336 608 LIHLRYFKLHWLEIKE--LPDTCCELFNLQTIEIEGCYNLNRLP-QGVGKLVNLRHLIFDVNFVEY-MPKGIERLTCLRT 683 (944)
Q Consensus 608 l~~Lr~L~Ls~~~i~~--lP~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 683 (944)
+++|++|+|++|.+.. .|..++++++|++|++++|..+..+| ..+.++++|++|+++.|.+.. .|..++.+++|++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999999874 56789999999999999987677776 478899999999997776654 5666666665555
Q ss_pred CCceEe--------------------cccccCCCCc--cc-ccccCcCcc-------------------------cCCce
Q 042336 684 LSEFVV--------------------VSRSDKYGNK--AC-NLGGLRQLN-------------------------HLRGS 715 (944)
Q Consensus 684 L~~~~~--------------------~~~~~~~~~~--~~-~l~~l~~L~-------------------------~L~~~ 715 (944)
|..... ...|...+.. +. ....+.+|+ .+. .
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~-~ 255 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS-E 255 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC-E
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc-c
Confidence 431100 1112111100 00 000011111 010 1
Q ss_pred EEEcCcc--CcCChhhhh-----------------------------hhhcccCCCcCcEEEEeecCCCCchhhhhhhc-
Q 042336 716 LRIRGLR--NVTDVHEAK-----------------------------IVELEKKKNLLHLSLSFVKRTDEEDEEEEVTE- 763 (944)
Q Consensus 716 l~i~~l~--~~~~~~~~~-----------------------------~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~- 763 (944)
+.+.... .+....... ........+|+.|+++.|.+............
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 1111000 000000000 00001123444455554443322111100000
Q ss_pred ------CCCcccHHHH--hccCCCCCCCceEEEeeCCCCCCC---hhhhcCCCccEEEeeccCCCCcCCCCCCCCCccee
Q 042336 764 ------GKNEVSHEAI--CEALRPPPNLESLDVWKYRGETLP---SWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELL 832 (944)
Q Consensus 764 ------~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~lp---~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 832 (944)
..+....... ...+..+++|+.|++++|....+| ..+..+++|+.|+|++|......+.++.+++|++|
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEE
Confidence 0011111111 233566788888888888876665 34667888888888888665333337778888888
Q ss_pred eecccccceEeCccccC---------cc-CccCccccccccccccccccccccCCccccCcccceeeecccccccCCC-C
Q 042336 833 EVFALQSVKRVGDEFLG---------IE-IVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLP-H 901 (944)
Q Consensus 833 ~L~~~~~l~~~~~~~~~---------~~-~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~ 901 (944)
+++++. ++.++..... .. ....+.+..|+..++.++... ..|. ...+++|+.|++++|. ++.+| .
T Consensus 416 ~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~-l~~~~~~ 491 (549)
T 2z81_A 416 NLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQ-LKSVPDG 491 (549)
T ss_dssp ECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSC-CCCCCTT
T ss_pred ECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCc-cCCcCHH
Confidence 888765 2222111000 00 001123334444455544332 3333 3468899999999986 45554 4
Q ss_pred CCCCCCCcCeEEEecCcc
Q 042336 902 QILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 902 ~~~~l~~L~~L~l~~c~~ 919 (944)
.+..+++|+.|++++|+.
T Consensus 492 ~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp GGGGCTTCCEEECCSSCB
T ss_pred HHhcCcccCEEEecCCCc
Confidence 477899999999998875
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=231.96 Aligned_cols=149 Identities=19% Similarity=0.256 Sum_probs=81.4
Q ss_pred CCCceEEEEEEeCCCCcc-hhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhh
Q 042336 529 SEEELRHSMLVFGNEASF-PVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQ 606 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~ 606 (944)
.+..++++.+..+.+... +..+.++++|+.|++.++... ....+..|.++++|++|+|++|. +..+ |..++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~----l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSK----IYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCC----CCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCc----CcccCHhHcc
Confidence 345566666666655442 345566666666666665321 11112335666666666666666 3333 55666
Q ss_pred cccccceeccCcccccc-cCcc--ccCCCcccEEEecCccCCccc--CcccccCCCCceeeccccccccc-cccccCC--
Q 042336 607 KLIHLRYFKLHWLEIKE-LPDT--CCELFNLQTIEIEGCYNLNRL--PQGVGKLVNLRHLIFDVNFVEYM-PKGIERL-- 678 (944)
Q Consensus 607 ~l~~Lr~L~Ls~~~i~~-lP~~--i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~l-p~~i~~l-- 678 (944)
++++|++|+|++|.+.. +|.. +++|++|++|+|++|. +..+ +..+++|++|++|+++.|.+..+ |..++.+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 66666666666666553 3443 6666666666666665 3332 23466666666666655554432 3334444
Q ss_pred CCCCcCC
Q 042336 679 TCLRTLS 685 (944)
Q Consensus 679 ~~L~~L~ 685 (944)
++|+.|.
T Consensus 174 ~~L~~L~ 180 (844)
T 3j0a_A 174 KTLSFFS 180 (844)
T ss_dssp CSSCCCE
T ss_pred CccceEE
Confidence 4555554
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=225.92 Aligned_cols=132 Identities=24% Similarity=0.272 Sum_probs=109.1
Q ss_pred CCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcccc
Q 042336 543 EASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEI 621 (944)
Q Consensus 543 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i 621 (944)
...+|..+ .+++++|++.++.... ..+..|.++++|++|+|++|. +..++ ..++++++|++|+|++|.+
T Consensus 19 l~~ip~~l--~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 19 FYKIPDNL--PFSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp CSSCCSSS--CSSCCEEECCSCCCCE----ECTTTTTTCSSCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ccccCCCc--cccccEEEccCCccCc----cChhHhhCCCCceEEECCCCc----CCccCcccccCchhCCEEeCcCCcC
Confidence 34455443 3689999999987532 112348899999999999998 66664 6789999999999999999
Q ss_pred cccC-ccccCCCcccEEEecCccCCcccCc-ccccCCCCceeecccccccc--ccccccCCCCCCcCC
Q 042336 622 KELP-DTCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDVNFVEY--MPKGIERLTCLRTLS 685 (944)
Q Consensus 622 ~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~ 685 (944)
..+| ..++++.+|++|++++|. +..+|. .++++++|++|+++.|.+.. +|..++++++|++|+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 8776 679999999999999997 777765 68999999999999888775 688899999999987
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=5.1e-21 Score=226.11 Aligned_cols=305 Identities=17% Similarity=0.164 Sum_probs=220.5
Q ss_pred CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcccccccCcc-cc
Q 042336 552 NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELPDT-CC 629 (944)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP~~-i~ 629 (944)
.+++++.|.+.++... ...+.+|.++++|++|+|++|. +..+| ..++.+++|++|+|++|.+..+|.. ++
T Consensus 49 ~l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCC----CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 4678899998887642 2234457889999999999998 66655 4889999999999999998877654 68
Q ss_pred CCCcccEEEecCccCCcccCccc-ccCCCCceeeccccccccccc-cccCCCCCCcCCceEecccccCCCCcccccccCc
Q 042336 630 ELFNLQTIEIEGCYNLNRLPQGV-GKLVNLRHLIFDVNFVEYMPK-GIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLR 707 (944)
Q Consensus 630 ~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 707 (944)
++++|++|+|++|. +..+|..+ +++++|++|+++.|.+..+|+ .++.+++|++|. ...|...+. .++.++
T Consensus 121 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~----L~~N~l~~~---~~~~l~ 192 (597)
T 3oja_B 121 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ----LSSNRLTHV---DLSLIP 192 (597)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE----CTTSCCSBC---CGGGCT
T ss_pred CCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE----CcCCCCCCc---Chhhhh
Confidence 99999999999997 77888764 899999999998888877765 488889998887 444433332 233444
Q ss_pred CcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEE
Q 042336 708 QLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLD 787 (944)
Q Consensus 708 ~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 787 (944)
+|..| .+..- . ...+....+|+.|++++|.+... .. ..+++|+.|+
T Consensus 193 ~L~~L----~l~~n-~--------l~~l~~~~~L~~L~ls~n~l~~~-------------------~~--~~~~~L~~L~ 238 (597)
T 3oja_B 193 SLFHA----NVSYN-L--------LSTLAIPIAVEELDASHNSINVV-------------------RG--PVNVELTILK 238 (597)
T ss_dssp TCSEE----ECCSS-C--------CSEEECCTTCSEEECCSSCCCEE-------------------EC--SCCSCCCEEE
T ss_pred hhhhh----hcccC-c--------cccccCCchhheeeccCCccccc-------------------cc--ccCCCCCEEE
Confidence 44422 22211 0 12234456799999998855432 11 1236899999
Q ss_pred EeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccceEeCccccCccCccCccccccccccc
Q 042336 788 VWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDL 866 (944)
Q Consensus 788 l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l 866 (944)
+++|.... +.++..+++|+.|+|++|......|. ++.+++|+.|+|+++. +..++. ....+|+|+.|.+.+
T Consensus 239 L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-----~~~~l~~L~~L~Ls~- 310 (597)
T 3oja_B 239 LQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSH- 310 (597)
T ss_dssp CCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC-----SSSCCTTCCEEECCS-
T ss_pred CCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCc-----ccccCCCCcEEECCC-
Confidence 99998765 57888999999999999987776554 8899999999999875 333221 112466666665544
Q ss_pred cccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcch
Q 042336 867 DEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRIL 920 (944)
Q Consensus 867 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 920 (944)
+... ..|..+..+++|+.|+|++|. +..+| +..+++|+.|++++|+.-
T Consensus 311 --N~l~-~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 311 --NHLL-HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp --SCCC-CCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred --CCCC-ccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCC
Confidence 3332 334446689999999999997 55565 567899999999999863
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=5.8e-21 Score=207.23 Aligned_cols=233 Identities=23% Similarity=0.295 Sum_probs=186.8
Q ss_pred hcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCC
Q 042336 579 NQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNL 658 (944)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 658 (944)
...+.+++|+|+++. +..+|..++++++|++|+|++|.+..+|..++++.+|++|++++|. +..+|..++++++|
T Consensus 78 ~~~~~l~~L~L~~n~----l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 78 ATQPGRVALELRSVP----LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRL 152 (328)
T ss_dssp HTSTTCCEEEEESSC----CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTC
T ss_pred ccccceeEEEccCCC----chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCC
Confidence 346889999999998 7899999999999999999999999999999999999999999998 77999999999999
Q ss_pred ceeeccc-cccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhccc
Q 042336 659 RHLIFDV-NFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEK 737 (944)
Q Consensus 659 ~~L~l~~-~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 737 (944)
++|+++. +.+..+|..++... +. ..+..
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~--------------------------------~~-------------------~~~~~ 181 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTD--------------------------------AS-------------------GEHQG 181 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC---------------------------------C-------------------CCEEE
T ss_pred CEEECCCCCCccccChhHhhcc--------------------------------ch-------------------hhhcc
Confidence 9999965 44555555432210 00 12345
Q ss_pred CCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCC
Q 042336 738 KKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKF 817 (944)
Q Consensus 738 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 817 (944)
+++|+.|++++|.+.. ++..+..+++|+.|++++|....+|..+..+++|+.|+|++|...
T Consensus 182 l~~L~~L~L~~n~l~~-------------------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRS-------------------LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp STTCCEEEEEEECCCC-------------------CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTC
T ss_pred CCCCCEEECcCCCcCc-------------------chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcch
Confidence 5678889999886552 344566778999999999988888888888999999999998887
Q ss_pred CcCCC-CCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccc
Q 042336 818 EIMPP-LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKL 896 (944)
Q Consensus 818 ~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 896 (944)
+.+|. ++.+++|++|++++|.... ..|..+..+++|+.|+|++|+.+
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~--------------------------------~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLL--------------------------------TLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCC--------------------------------BCCTTGGGCTTCCEEECTTCTTC
T ss_pred hhhHHHhcCCCCCCEEECCCCCchh--------------------------------hcchhhhcCCCCCEEeCCCCCch
Confidence 77765 7888888888888765211 11222446899999999999999
Q ss_pred cCCCCCCCCCCCcCeEEEecCc
Q 042336 897 KSLPHQILGNTTLQMLKIYNCR 918 (944)
Q Consensus 897 ~~lp~~~~~l~~L~~L~l~~c~ 918 (944)
+.+|..+.++++|+.+.+..+.
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGGG
T ss_pred hhccHHHhhccCceEEeCCHHH
Confidence 9999999999999999988653
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=1.1e-20 Score=216.43 Aligned_cols=317 Identities=20% Similarity=0.229 Sum_probs=203.5
Q ss_pred CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCC
Q 042336 552 NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCEL 631 (944)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L 631 (944)
+++++++|.+.++.... ++. +..+++|++|+|++|. +..+|. ++++++|++|++++|.+..+|. ++++
T Consensus 44 ~l~~l~~L~l~~~~i~~-----l~~-~~~l~~L~~L~Ls~n~----l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-----IDG-VEYLNNLTQINFSNNQ----LTDITP-LKNLTKLVDILMNNNQIADITP-LANL 111 (466)
T ss_dssp HHHTCCEEECCSSCCCC-----CTT-GGGCTTCCEEECCSSC----CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred HhccccEEecCCCCCcc-----Ccc-hhhhcCCCEEECCCCc----cCCchh-hhccccCCEEECCCCccccChh-hcCC
Confidence 46789999999876432 333 6889999999999998 777777 9999999999999999998887 9999
Q ss_pred CcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCccc
Q 042336 632 FNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNH 711 (944)
Q Consensus 632 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 711 (944)
++|++|++++|. +..+|. +.++++|++|+++.|.+..+| .++.+++|+.|.. . +.... . ..+..+++|+
T Consensus 112 ~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l----~-~~~~~-~-~~~~~l~~L~- 180 (466)
T 1o6v_A 112 TNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSF----G-NQVTD-L-KPLANLTTLE- 180 (466)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEE----E-ESCCC-C-GGGTTCTTCC-
T ss_pred CCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeec----C-CcccC-c-hhhccCCCCC-
Confidence 999999999997 777776 999999999999888888876 4888999998873 1 22211 1 1244555554
Q ss_pred CCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhh-----hcCCCcccHHHHhccCCCCCCCceE
Q 042336 712 LRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEV-----TEGKNEVSHEAICEALRPPPNLESL 786 (944)
Q Consensus 712 L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~L~~L 786 (944)
.+.+.... +... ..+..+++|+.|+++.|.+.+..+..... ....+... ....+..+++|+.|
T Consensus 181 ---~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~---~~~~l~~l~~L~~L 248 (466)
T 1o6v_A 181 ---RLDISSNK-VSDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDL 248 (466)
T ss_dssp ---EEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC---CCGGGGGCTTCSEE
T ss_pred ---EEECcCCc-CCCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc---cchhhhcCCCCCEE
Confidence 44443321 1111 33667788888888888665432210000 00000000 01123345566666
Q ss_pred EEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCccccCccCccCccccccccccc
Q 042336 787 DVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDL 866 (944)
Q Consensus 787 ~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l 866 (944)
++++|....++. +..+++|+.|++++|.... ++.+..+++|+.|++++|. +..+. ....+++|+.| ++
T Consensus 249 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~------~~~~l~~L~~L---~L 316 (466)
T 1o6v_A 249 DLANNQISNLAP-LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQ-LEDIS------PISNLKNLTYL---TL 316 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CSCCG------GGGGCTTCSEE---EC
T ss_pred ECCCCccccchh-hhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCc-ccCch------hhcCCCCCCEE---EC
Confidence 666665544443 4556666666666665443 2335666666666666554 11110 01133444444 44
Q ss_pred cccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcc
Q 042336 867 DEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 867 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
.++......+ +..+++|+.|++++|+ +..++ .+..+++|+.|++++|+.
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCcc
Confidence 4443333222 4578888888888884 55554 466788999999988875
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=4.5e-20 Score=227.01 Aligned_cols=160 Identities=21% Similarity=0.227 Sum_probs=121.9
Q ss_pred EEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccceecc
Q 042336 538 LVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKL 616 (944)
Q Consensus 538 l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~L 616 (944)
....++..+|. ..++|++|+++++.... ..+..|.++++|++|+|++|.. +..+ |..++++++|++|+|
T Consensus 11 cs~~~L~~vP~---lp~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 11 YRFCNLTQVPQ---VLNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYT---PLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp ESCCCSSCCCS---SCTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCC---CCEECTTTTSSCTTCCEEEC
T ss_pred ccCCCCCCCCC---CCCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCC---ccccCHHHhcCCCCCCEEEC
Confidence 33445555665 46899999999987532 1233488999999999999964 5566 788999999999999
Q ss_pred Cccccccc-CccccCCCcccEEEecCccCCcccCcc--cccCCCCceeecccccccccc--ccccCCCCCCcCCceEecc
Q 042336 617 HWLEIKEL-PDTCCELFNLQTIEIEGCYNLNRLPQG--VGKLVNLRHLIFDVNFVEYMP--KGIERLTCLRTLSEFVVVS 691 (944)
Q Consensus 617 s~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~~~~~~~ 691 (944)
++|.+..+ |..+++|.+|++|+|++|.....+|.. +.+|++|++|+++.|.+..++ ..++++++|++|+ ..
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~----Ls 156 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID----FS 156 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE----EE
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE----CC
Confidence 99999865 888999999999999999844446665 899999999999988887664 4689999999997 45
Q ss_pred cccCCCCcccccccC--cCccc
Q 042336 692 RSDKYGNKACNLGGL--RQLNH 711 (944)
Q Consensus 692 ~~~~~~~~~~~l~~l--~~L~~ 711 (944)
.|...+..+..+..+ .+|+.
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCC
T ss_pred CCcCCeeCHHHcccccCCccce
Confidence 555554444455544 44443
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=2.5e-20 Score=211.47 Aligned_cols=306 Identities=20% Similarity=0.180 Sum_probs=175.3
Q ss_pred hccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccc
Q 042336 549 FMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTC 628 (944)
Q Consensus 549 ~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i 628 (944)
.+.++++|++|++.++.... ++ .+..+++|++|+|++|. +..+| ++.+++|++|++++|.+..+| +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-----~~-~l~~l~~L~~L~Ls~n~----l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-----MT-GIEKLTGLTKLICTSNN----ITTLD--LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-----CT-TGGGCTTCSEEECCSSC----CSCCC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ChhHcCCCCEEEccCCCccc-----Ch-hhcccCCCCEEEccCCc----CCeEc--cccCCCCCEEECcCCCCceee--c
Confidence 34456777777777765322 12 25677777777777776 55554 677777777777777777665 6
Q ss_pred cCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcC
Q 042336 629 CELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQ 708 (944)
Q Consensus 629 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 708 (944)
+++++|++|++++|. +..+| ++.+++|++|+++.|.+..+| ++.+++|+.|. ...|...+.. .+..+++
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~----l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELD----CHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE----CTTCSCCCCC--CCTTCTT
T ss_pred CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEE----CCCCCccccc--ccccCCc
Confidence 777777777777776 55564 677777777777777666653 66666666665 3333222211 2334444
Q ss_pred cccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEE
Q 042336 709 LNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDV 788 (944)
Q Consensus 709 L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 788 (944)
|+ .+.+... .+... .+..+++|+.|++++|.+.+. .+..+++|+.|++
T Consensus 172 L~----~L~ls~n-~l~~l------~l~~l~~L~~L~l~~N~l~~~---------------------~l~~l~~L~~L~L 219 (457)
T 3bz5_A 172 LT----TLDCSFN-KITEL------DVSQNKLLNRLNCDTNNITKL---------------------DLNQNIQLTFLDC 219 (457)
T ss_dssp CC----EEECCSS-CCCCC------CCTTCTTCCEEECCSSCCSCC---------------------CCTTCTTCSEEEC
T ss_pred CC----EEECCCC-cccee------ccccCCCCCEEECcCCcCCee---------------------ccccCCCCCEEEC
Confidence 43 2222221 11111 145667778888877754431 2556677888888
Q ss_pred eeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCc---cccCc-cCccCccccccccc
Q 042336 789 WKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGD---EFLGI-EIVAFPKLKHLIFV 864 (944)
Q Consensus 789 ~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~---~~~~~-~~~~f~~L~~L~l~ 864 (944)
++|....+| +..+++|+.|++++|..... | ++.+++|+.|.+..+. ++.+.- ...+. ....+++|+.|.+.
T Consensus 220 s~N~l~~ip--~~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n~-L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 220 SSNKLTEID--VTPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYFQAEGCRKIKELDVT 294 (457)
T ss_dssp CSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTCC-CSCCCCTTCTTCCEEECTTCTTCCCCCCT
T ss_pred cCCcccccC--ccccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCCC-CCEEECCCCccCCcccccccccCCEEECC
Confidence 887776676 56777888888887765542 2 3445555554443321 111110 00000 01234555555554
Q ss_pred ccccccccccc-----CCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcc
Q 042336 865 DLDEWEEWENE-----KNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 865 ~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
++..+..+... .-.+..+++|+.|++++|. ++.+| +.++++|+.|++++|..
T Consensus 295 ~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 295 HNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSCC
T ss_pred CCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCCC
Confidence 44322221110 0013456777777777764 45554 66788888888888764
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=3.7e-20 Score=210.12 Aligned_cols=278 Identities=20% Similarity=0.192 Sum_probs=208.4
Q ss_pred hhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCC
Q 042336 578 FNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVN 657 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 657 (944)
+.++++|++|++++|. +..+| .++.+++|++|+|++|.+..+| ++++++|++|++++|. +..+| ++++++
T Consensus 38 ~~~l~~L~~L~Ls~n~----l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS----ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp HHHHTTCCEEECCSSC----CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred hhHcCCCCEEEccCCC----cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 5678999999999998 77777 6999999999999999999887 8999999999999998 77775 899999
Q ss_pred CceeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhccc
Q 042336 658 LRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEK 737 (944)
Q Consensus 658 L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 737 (944)
|++|+++.|.+..+| ++.+++|+.|. ...|...+. .++.+++|+ .+.+.....+... .+..
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~----l~~N~l~~l---~l~~l~~L~----~L~l~~n~~~~~~------~~~~ 168 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLN----CARNTLTEI---DVSHNTQLT----ELDCHLNKKITKL------DVTP 168 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEE----CTTSCCSCC---CCTTCTTCC----EEECTTCSCCCCC------CCTT
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEE----CCCCcccee---ccccCCcCC----EEECCCCCccccc------cccc
Confidence 999999999888886 88899999887 455544442 244555544 4444433222221 3667
Q ss_pred CCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCC
Q 042336 738 KKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKF 817 (944)
Q Consensus 738 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 817 (944)
+++|+.|++++|.+.+. + +..+++|+.|++++|....++ +..+++|+.|++++|...
T Consensus 169 l~~L~~L~ls~n~l~~l-------------------~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITEL-------------------D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp CTTCCEEECCSSCCCCC-------------------C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred CCcCCEEECCCCcccee-------------------c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccc
Confidence 88999999999865542 1 667789999999999877764 678999999999999876
Q ss_pred CcCCCCCCCCCcceeeecccccceEeCccccCccCccCcccccc-------ccccccccccccccCCccccCcccceeee
Q 042336 818 EIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHL-------IFVDLDEWEEWENEKNDITIMPQLNSLEI 890 (944)
Q Consensus 818 ~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L-------~l~~l~~~~~~~~~~~~~~~l~~L~~L~l 890 (944)
+ +| ++.+++|+.|+++++. +. +.....|++|+.| +..++.++......| ...+++|+.|++
T Consensus 226 ~-ip-~~~l~~L~~L~l~~N~-l~-------~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~L 293 (457)
T 3bz5_A 226 E-ID-VTPLTQLTYFDCSVNP-LT-------ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDV 293 (457)
T ss_dssp C-CC-CTTCTTCSEEECCSSC-CS-------CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCC
T ss_pred c-cC-ccccCCCCEEEeeCCc-CC-------CcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEEC
Confidence 6 66 8899999999999875 22 2223456776643 334444444333332 347899999999
Q ss_pred cccccccCCCCC--------CCCCCCcCeEEEecCcc
Q 042336 891 RDCHKLKSLPHQ--------ILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 891 ~~c~~l~~lp~~--------~~~l~~L~~L~l~~c~~ 919 (944)
++|+.++.+|.. +.++++|+.|++++|..
T Consensus 294 s~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l 330 (457)
T 3bz5_A 294 THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL 330 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CCCcccceeccCCCcceEechhhcccCCEEECCCCcc
Confidence 999887766642 34556777777776654
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=6e-21 Score=218.51 Aligned_cols=332 Identities=15% Similarity=0.076 Sum_probs=224.1
Q ss_pred CCceEEEEEEeCCCC-cc-hhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccc-cchh--
Q 042336 530 EEELRHSMLVFGNEA-SF-PVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYE-IPKE-- 604 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~-~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~-lp~~-- 604 (944)
....+++.+..+... .+ +..+..+++|++|++.++.... ..+..|.++++|++|+|++|. +.. .|..
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~ 124 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ----LETGAFNGLANLEVLTLTQCN----LDGAVLSGNF 124 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE----ECTTTTTTCTTCCEEECTTSC----CBTHHHHSST
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCc----cChhhccCcccCCEEeCCCCC----CCccccCccc
Confidence 457888998888664 23 4567889999999999987532 224448899999999999998 543 4544
Q ss_pred hhcccccceeccCccccccc-Ccc-ccCCCcccEEEecCccCCcccCcccccC--CCCceeecccccccccccc------
Q 042336 605 IQKLIHLRYFKLHWLEIKEL-PDT-CCELFNLQTIEIEGCYNLNRLPQGVGKL--VNLRHLIFDVNFVEYMPKG------ 674 (944)
Q Consensus 605 i~~l~~Lr~L~Ls~~~i~~l-P~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L--~~L~~L~l~~~~~~~lp~~------ 674 (944)
++.+++|++|+|++|.+..+ |.. ++++++|++|++++|......|..+..+ .+|++|+++.+.+..++..
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp TTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred ccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 89999999999999999866 555 8999999999999998545556677766 7888899888777666532
Q ss_pred ---ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCC------hhhhhhhhcc--cCCCcCc
Q 042336 675 ---IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTD------VHEAKIVELE--KKKNLLH 743 (944)
Q Consensus 675 ---i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~------~~~~~~~~l~--~~~~L~~ 743 (944)
+..+++|++|+ ...|...+..+..+..+.....++ .+.+........ ........+. ..++|+.
T Consensus 205 ~~~~~~~~~L~~L~----Ls~n~l~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 205 CGNPFKNTSITTLD----LSGNGFKESMAKRFFDAIAGTKIQ-SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp HCCTTTTCEEEEEE----CTTSCCCHHHHHHHHHHTTTCCEE-EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred cccccccceeeeEe----cCCCcccccchhhhhcccccccee-eEeeccccccccccchhhhccCcccccccccccCceE
Confidence 23456677665 334333322222222221112121 222221110000 0000001111 2368999
Q ss_pred EEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCC-ChhhhcCCCccEEEeeccCCCCcCCC
Q 042336 744 LSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETL-PSWIMSLNKLKKLELSFCNKFEIMPP 822 (944)
Q Consensus 744 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~ 822 (944)
|+++.|.+... .+..+..+++|+.|++++|....+ |.++..+++|+.|+|++|...+..+.
T Consensus 280 L~l~~n~l~~~------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 280 CDLSKSKIFAL------------------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp EECCSSCCCEE------------------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred EEecCcccccc------------------chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 99998865542 345677889999999999987665 56788999999999999987655443
Q ss_pred -CCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCC
Q 042336 823 -LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLP 900 (944)
Q Consensus 823 -l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 900 (944)
++.+++|++|+++++. +..+ .+..|..+..|+..++.++......+..+..+++|+.|+|++|+.....|
T Consensus 342 ~~~~l~~L~~L~Ls~N~-l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNH-IRAL-------GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGTTCTTCCEEECCSSC-CCEE-------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhcCcccCCEEECCCCc-cccc-------ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7889999999999875 2222 12345555556666666665544444456789999999999998665555
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=5e-20 Score=216.49 Aligned_cols=120 Identities=23% Similarity=0.238 Sum_probs=98.5
Q ss_pred CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCccccccc-Ccccc
Q 042336 552 NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKEL-PDTCC 629 (944)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~l-P~~i~ 629 (944)
.|...+++++.++.... +|..+ .++|++|+|++|. +..+| ..++++++|++|+|++|.+..+ |..++
T Consensus 29 ~~~~~~~l~ls~~~L~~-----ip~~~--~~~L~~L~Ls~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-----VPKDL--PPRTKALSLSQNS----ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp ----CCEEECTTSCCCS-----CCTTS--CTTCCEEECCSSC----CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred ccCCCcEEEcCCCCCcc-----CCCCC--CCCcCEEECCCCC----ccccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 45556889998876432 22212 2789999999999 66766 6899999999999999999977 67799
Q ss_pred CCCcccEEEecCccCCcccCcccccCCCCceeecccccccccc--ccccCCCCCCcCC
Q 042336 630 ELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMP--KGIERLTCLRTLS 685 (944)
Q Consensus 630 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~ 685 (944)
++++|++|++++|. +..+|.. .+++|++|+++.|.+..+| ..++++++|++|+
T Consensus 98 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 98 FNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152 (562)
T ss_dssp TCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence 99999999999998 8899987 8999999999999888765 6799999999987
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=3.3e-20 Score=217.86 Aligned_cols=348 Identities=16% Similarity=0.118 Sum_probs=215.1
Q ss_pred CCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcc
Q 042336 541 GNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWL 619 (944)
Q Consensus 541 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~ 619 (944)
+.+..+|..+ .++|++|++.++.... ..+..|.++++|++|+|++|. +..++ ..++++++|++|+|++|
T Consensus 15 ~~l~~ip~~~--~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 15 RSFTSIPSGL--TAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSR----INTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SCCSSCCSCC--CTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTS
T ss_pred CccccccccC--CCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCC----cCccChhhccccccCCEEECCCC
Confidence 3444456544 3799999999987532 122347899999999999998 66655 78999999999999999
Q ss_pred cccccCcc-ccCCCcccEEEecCccCCc--ccCcccccCCCCceeeccccc-ccccc-ccccCCCCCCcCCceEeccccc
Q 042336 620 EIKELPDT-CCELFNLQTIEIEGCYNLN--RLPQGVGKLVNLRHLIFDVNF-VEYMP-KGIERLTCLRTLSEFVVVSRSD 694 (944)
Q Consensus 620 ~i~~lP~~-i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~-~~~lp-~~i~~l~~L~~L~~~~~~~~~~ 694 (944)
.+..+|.. ++++++|++|++++|. +. ..|..++++++|++|+++.|. +..+| ..++.+++|+.|+ ...+.
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~----L~~n~ 159 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE----IKALS 159 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE----EEETT
T ss_pred ccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee----ccCCc
Confidence 99988766 9999999999999998 65 457789999999999997776 67777 4688999999887 44555
Q ss_pred CCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhh---hc-------C
Q 042336 695 KYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEV---TE-------G 764 (944)
Q Consensus 695 ~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~---~~-------~ 764 (944)
..+..+..++.+++|+.| .+..-. ..... ...+..+++|+.|+++.|.+.+........ .. .
T Consensus 160 l~~~~~~~l~~l~~L~~L----~l~~n~-~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHL----TLHLSE-SAFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp CCEECTTTTTTCSEEEEE----EEECSB-STTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred ccccChhhhhccccCceE----ecccCc-ccccc---hhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 554455566666666544 332211 11111 112234567777777777654421000000 00 0
Q ss_pred CCccc---HHHHh------------------------------ccC-----------------------------CCCCC
Q 042336 765 KNEVS---HEAIC------------------------------EAL-----------------------------RPPPN 782 (944)
Q Consensus 765 ~~~~~---~~~~~------------------------------~~l-----------------------------~~~~~ 782 (944)
..... ...+. ..+ ...++
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence 00000 00000 000 01246
Q ss_pred CceEEEeeCCCCCCChhhh-cCCCccEEEeeccCCCCcCC----CCCCCCCcceeeecccccceEeCccccCccCccCcc
Q 042336 783 LESLDVWKYRGETLPSWIM-SLNKLKKLELSFCNKFEIMP----PLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPK 857 (944)
Q Consensus 783 L~~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~ 857 (944)
|+.|++++|....+|.++. .+++|+.|+|++|...+..| .++.+++|+.|++++|. ++.+.. .+ ..|..
T Consensus 312 L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--~~---~~~~~ 385 (549)
T 2z81_A 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQK--TG---EILLT 385 (549)
T ss_dssp CCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHH--HH---HHGGG
T ss_pred ceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-cccccc--ch---hhhhc
Confidence 7888888888778888774 78999999999988765432 26788899999998775 211110 00 11233
Q ss_pred ccccccccccccccccccCCccccCcccceeeecccccccCCCCCC------------------CCCCCcCeEEEecCcc
Q 042336 858 LKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQI------------------LGNTTLQMLKIYNCRI 919 (944)
Q Consensus 858 L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~------------------~~l~~L~~L~l~~c~~ 919 (944)
++.|+..++.++... ..|..+..+++|+.|++++|. ++.+|..+ ..+++|++|++++|..
T Consensus 386 l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL 463 (549)
T ss_dssp CTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCcc
Confidence 333333344443222 233344456666666666664 33343322 2456666666666643
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=8e-21 Score=212.46 Aligned_cols=284 Identities=17% Similarity=0.201 Sum_probs=213.5
Q ss_pred cCCcccEEEeccCCCcccccccchh-hhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCccc-CcccccCC
Q 042336 580 QFTCLRALKITRNSKENSIYEIPKE-IQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRL-PQGVGKLV 656 (944)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~ 656 (944)
.+++|++|+++++. +..+|.. +..+++|++|+|++|.+..+|. .++++++|++|++++|. +..+ |..+.+++
T Consensus 43 ~l~~l~~l~l~~~~----l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCE----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCc----hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCC
Confidence 46789999999998 8888866 5889999999999999997765 79999999999999998 6655 45689999
Q ss_pred CCceeecccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhc
Q 042336 657 NLRHLIFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVEL 735 (944)
Q Consensus 657 ~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 735 (944)
+|++|+++.|.+..+|.+ ++.+++|++|. ...|......+..+..+++|+.| .+..- .+.. ..+
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~----L~~n~l~~~~~~~~~~l~~L~~L----~l~~n-~l~~------~~~ 182 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLS----MSNNNLERIEDDTFQATTSLQNL----QLSSN-RLTH------VDL 182 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEE----CCSSCCCBCCTTTTSSCTTCCEE----ECCSS-CCSB------CCG
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEE----CCCCccCccChhhccCCCCCCEE----ECCCC-cCCc------ccc
Confidence 999999999999999987 48899999997 55555555444556666666644 33221 1111 134
Q ss_pred ccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccC
Q 042336 736 EKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCN 815 (944)
Q Consensus 736 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 815 (944)
..+++|+.|+++.|.+. .+..+++|+.|++++|....+|.. .+++|+.|++++|.
T Consensus 183 ~~l~~L~~L~l~~n~l~-----------------------~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLS-----------------------TLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNN 237 (390)
T ss_dssp GGCTTCSEEECCSSCCS-----------------------EEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSC
T ss_pred ccccccceeeccccccc-----------------------ccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCC
Confidence 56788999999877432 234567899999999987766654 36899999999997
Q ss_pred CCCcCCCCCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeeccccc
Q 042336 816 KFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHK 895 (944)
Q Consensus 816 ~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 895 (944)
..+ .+.++.+++|++|+++++. +..+ .+..|..++.|+..++.++.... .+.....+|+|+.|++++|.
T Consensus 238 l~~-~~~l~~l~~L~~L~Ls~n~-l~~~-------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~- 306 (390)
T 3o6n_A 238 LTD-TAWLLNYPGLVEVDLSYNE-LEKI-------MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH- 306 (390)
T ss_dssp CCC-CGGGGGCTTCSEEECCSSC-CCEE-------ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC-
T ss_pred Ccc-cHHHcCCCCccEEECCCCc-CCCc-------ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc-
Confidence 654 4678899999999999875 2222 12234445555555555554333 23334578999999999995
Q ss_pred ccCCCCCCCCCCCcCeEEEecCcc
Q 042336 896 LKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 896 l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
+..+|..+..+++|+.|++++|+.
T Consensus 307 l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 307 LLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ceecCccccccCcCCEEECCCCcc
Confidence 678888778899999999999986
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=215.60 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=113.3
Q ss_pred EEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccc
Q 042336 534 RHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLR 612 (944)
Q Consensus 534 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr 612 (944)
+++.+..+.+..+|..+. ++|+.|+++++... ...+..|.++++|++|+|++|. +..+ |..++++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNR----IQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSC----CCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCccc----ccChhhccccccccEEecCCCc----cCCcChHHhhcccCCC
Confidence 456677777776776655 89999999998753 2234558999999999999998 6665 78899999999
Q ss_pred eeccCcccccccCccccCCCcccEEEecCccCCcc--cCcccccCCCCceeeccccccccccccccCCCCC--CcCC
Q 042336 613 YFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNR--LPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCL--RTLS 685 (944)
Q Consensus 613 ~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L--~~L~ 685 (944)
+|+|++|.+..+|.. .+.+|++|++++|. +.. +|..++++++|++|+++.|.+.. ..++.+++| +.|.
T Consensus 73 ~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 73 YLDLSHNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVL 144 (520)
T ss_dssp EEECCSSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEE
T ss_pred EEecCCCceeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEE
Confidence 999999999999987 89999999999998 554 67899999999999998887765 346677777 7665
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.8e-20 Score=221.39 Aligned_cols=284 Identities=18% Similarity=0.201 Sum_probs=215.3
Q ss_pred cCCcccEEEeccCCCcccccccchh-hhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCcccCc-ccccCC
Q 042336 580 QFTCLRALKITRNSKENSIYEIPKE-IQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQ-GVGKLV 656 (944)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~ 656 (944)
.+.++++|+++++. +..+|.. ++.+++|++|+|++|.+..+|. .++++.+|++|+|++|. +..+|. .++.++
T Consensus 49 ~l~~l~~l~l~~~~----l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCE----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCC----CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCC
Confidence 45789999999998 8888865 6789999999999999997765 79999999999999998 666654 579999
Q ss_pred CCceeecccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhc
Q 042336 657 NLRHLIFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVEL 735 (944)
Q Consensus 657 ~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 735 (944)
+|++|++++|.+..+|.. ++.+++|++|. ...|...+..+..++.+++|+.| .+.+. .+.. ..+
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~~l~~L~~L----~L~~N-~l~~------~~~ 188 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLS----MSNNNLERIEDDTFQATTSLQNL----QLSSN-RLTH------VDL 188 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEE----CCSSCCCBCCTTTTTTCTTCCEE----ECTTS-CCSB------CCG
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEE----eeCCcCCCCChhhhhcCCcCcEE----ECcCC-CCCC------cCh
Confidence 999999999999999987 48999999997 55665555555566777766644 33321 1111 124
Q ss_pred ccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccC
Q 042336 736 EKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCN 815 (944)
Q Consensus 736 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 815 (944)
..+++|+.|++++|.+. .+..+++|+.|++++|....+|..+ .++|+.|+|++|.
T Consensus 189 ~~l~~L~~L~l~~n~l~-----------------------~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~ 243 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLS-----------------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN 243 (597)
T ss_dssp GGCTTCSEEECCSSCCS-----------------------EEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSC
T ss_pred hhhhhhhhhhcccCccc-----------------------cccCCchhheeeccCCccccccccc--CCCCCEEECCCCC
Confidence 55788999999887432 3445678999999999876666543 4799999999997
Q ss_pred CCCcCCCCCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeeccccc
Q 042336 816 KFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHK 895 (944)
Q Consensus 816 ~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 895 (944)
..+ ++.++.+++|+.|+|+++.- .. ..+..|..+..|+.+++.++.... .+.....+|+|+.|+|++|.
T Consensus 244 l~~-~~~l~~l~~L~~L~Ls~N~l-~~-------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~- 312 (597)
T 3oja_B 244 LTD-TAWLLNYPGLVEVDLSYNEL-EK-------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH- 312 (597)
T ss_dssp CCC-CGGGGGCTTCSEEECCSSCC-CE-------EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-
T ss_pred CCC-ChhhccCCCCCEEECCCCcc-CC-------CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-
Confidence 665 46688999999999998762 21 122344455555555665554433 23445579999999999996
Q ss_pred ccCCCCCCCCCCCcCeEEEecCcc
Q 042336 896 LKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 896 l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
+..+|..+..+++|+.|++++|+.
T Consensus 313 l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 313 LLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSCC
T ss_pred CCccCcccccCCCCCEEECCCCCC
Confidence 668888888899999999999986
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=7.5e-20 Score=198.50 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=159.8
Q ss_pred CCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCC
Q 042336 553 AKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELF 632 (944)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~ 632 (944)
.++++.|++.++.... ++..+.++++|++|+|++|. +..+|..++++++|++|+|++|.+..+|..+++++
T Consensus 80 ~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~----l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAG----LMELPDTMQQFAGLETLTLARNPLRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSC----CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred ccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCC----ccchhHHHhccCCCCEEECCCCccccCcHHHhcCc
Confidence 4677888888776432 23335668899999999998 66888889999999999999999999999999999
Q ss_pred cccEEEecCccCCcccCccccc---------CCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCccccc
Q 042336 633 NLQTIEIEGCYNLNRLPQGVGK---------LVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNL 703 (944)
Q Consensus 633 ~L~~L~L~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l 703 (944)
+|++|++++|..+..+|..+.. +++|++|+++.|.+..+|..++.+++|+.|. ...|...+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~----L~~N~l~~------ 220 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK----IRNSPLSA------ 220 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE----EESSCCCC------
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE----ccCCCCCc------
Confidence 9999999998878888887765 8999999998888888888787777777775 22211110
Q ss_pred ccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCC
Q 042336 704 GGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNL 783 (944)
Q Consensus 704 ~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 783 (944)
+ ...+..+++|+.|++++|.+.+. ++..+..+++|
T Consensus 221 --------l-------------------~~~l~~l~~L~~L~Ls~n~~~~~------------------~p~~~~~l~~L 255 (328)
T 4fcg_A 221 --------L-------------------GPAIHHLPKLEELDLRGCTALRN------------------YPPIFGGRAPL 255 (328)
T ss_dssp --------C-------------------CGGGGGCTTCCEEECTTCTTCCB------------------CCCCTTCCCCC
T ss_pred --------C-------------------chhhccCCCCCEEECcCCcchhh------------------hHHHhcCCCCC
Confidence 0 01244556677777777644432 34456667777
Q ss_pred ceEEEeeCC-CCCCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeec
Q 042336 784 ESLDVWKYR-GETLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVF 835 (944)
Q Consensus 784 ~~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~ 835 (944)
+.|+|++|. ...+|.++..+++|+.|+|++|...+.+|. ++.+++|+.+.+.
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 777777754 445677777777888888887777776665 6777777777665
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=4.6e-20 Score=198.99 Aligned_cols=226 Identities=22% Similarity=0.285 Sum_probs=112.4
Q ss_pred hhcCCcccEEEecc-CCCcccccccchhhhcccccceeccCccccc-ccCccccCCCcccEEEecCccCCcccCcccccC
Q 042336 578 FNQFTCLRALKITR-NSKENSIYEIPKEIQKLIHLRYFKLHWLEIK-ELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKL 655 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~-~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 655 (944)
+.++++|++|+|++ +.. ...+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.....+|..+..+
T Consensus 72 l~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp GGGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred HhCCCCCCeeeCCCCCcc---cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 44444444444442 331 2234444444444444444444444 444444444444444444444222444444444
Q ss_pred CCCceeeccccccc-cccccccCCC-CCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhh
Q 042336 656 VNLRHLIFDVNFVE-YMPKGIERLT-CLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIV 733 (944)
Q Consensus 656 ~~L~~L~l~~~~~~-~lp~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~ 733 (944)
++|++|+++.|.+. .+|..++.++ +|+.|. ...|...+..+..+..+. |+ .+.+..- ........
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~----L~~N~l~~~~~~~~~~l~-L~----~L~Ls~N----~l~~~~~~ 215 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMT----ISRNRLTGKIPPTFANLN-LA----FVDLSRN----MLEGDASV 215 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEE----CCSSEEEEECCGGGGGCC-CS----EEECCSS----EEEECCGG
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEE----CcCCeeeccCChHHhCCc-cc----EEECcCC----cccCcCCH
Confidence 44444444444443 3444444444 444443 122111111111222221 11 1111110 00001113
Q ss_pred hcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCC-CCChhhhcCCCccEEEee
Q 042336 734 ELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGE-TLPSWIMSLNKLKKLELS 812 (944)
Q Consensus 734 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~ 812 (944)
.+..+++|+.|++++|.+... ...+..+++|+.|++++|... .+|.++..+++|+.|+|+
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~-------------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFD-------------------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCB-------------------GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred HHhcCCCCCEEECCCCceeee-------------------cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 455667777777777755432 222455677888888777754 577777777888888888
Q ss_pred ccCCCCcCCCCCCCCCcceeeecccc
Q 042336 813 FCNKFEIMPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 813 ~~~~~~~l~~l~~l~~L~~L~L~~~~ 838 (944)
+|...+.+|..+.+++|+.|.+.+++
T Consensus 277 ~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 277 FNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CCcccccCCCCccccccChHHhcCCC
Confidence 77776667777777777777777654
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=8.9e-19 Score=211.23 Aligned_cols=348 Identities=17% Similarity=0.156 Sum_probs=179.9
Q ss_pred eEEEEEEeCCCCcc-hhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccc--cccch----hh
Q 042336 533 LRHSMLVFGNEASF-PVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSI--YEIPK----EI 605 (944)
Q Consensus 533 ~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~--~~lp~----~i 605 (944)
.+.+.+..+.+... +..+..+++|++|.+.++.... ..+..|.++++|++|+++++.....+ ..+|. .+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH----LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE----ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCc----cChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 45555555444332 2334555556666555554221 11222455555666665544311100 02222 44
Q ss_pred hcccccceeccCcccccccC-ccccCCCcccEEEecCccC-CcccCcc-ccc--CCCCceeeccccccccc-cccccCCC
Q 042336 606 QKLIHLRYFKLHWLEIKELP-DTCCELFNLQTIEIEGCYN-LNRLPQG-VGK--LVNLRHLIFDVNFVEYM-PKGIERLT 679 (944)
Q Consensus 606 ~~l~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~-l~~lp~~-i~~--L~~L~~L~l~~~~~~~l-p~~i~~l~ 679 (944)
+.+++|++|++++|.+..++ ..+.++++|++|++++|.. +..+|.. +.. .++|+.|+++.|.+..+ |..+..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 55556666666665555332 3355556666666655531 1222211 111 23556666655555444 23455555
Q ss_pred CCCcCCceEecccccCCCCc-ccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhh
Q 042336 680 CLRTLSEFVVVSRSDKYGNK-ACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEE 758 (944)
Q Consensus 680 ~L~~L~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 758 (944)
+|+.|+ ...|...+.. +..+..+.+|+. +.+.... ........+..+++|+.|+++.|.+...
T Consensus 406 ~L~~L~----L~~N~l~~~~~~~~~~~l~~L~~----L~Ls~n~----l~~~~~~~~~~~~~L~~L~l~~n~l~~~---- 469 (680)
T 1ziw_A 406 HLEVLD----LGLNEIGQELTGQEWRGLENIFE----IYLSYNK----YLQLTRNSFALVPSLQRLMLRRVALKNV---- 469 (680)
T ss_dssp TCCEEE----CCSSCCEEECCSGGGTTCTTCCE----EECCSCS----EEECCTTTTTTCTTCCEEECTTSCCBCT----
T ss_pred CCCEEe----CCCCcCccccCcccccCcccccE----EecCCCC----cceeChhhhhcCcccccchhcccccccc----
Confidence 565554 2222221111 123333333332 2221110 0001112334455666666665533211
Q ss_pred hhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCCh-hhhcCCCccEEEeeccCCCCc---------CCCCCCCCC
Q 042336 759 EEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPS-WIMSLNKLKKLELSFCNKFEI---------MPPLGKLPS 828 (944)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~---------l~~l~~l~~ 828 (944)
...+..+..+++|+.|++++|....+|. ++..+++|+.|+|++|..... ...++.+++
T Consensus 470 ------------~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 470 ------------DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp ------------TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred ------------ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCC
Confidence 1134456677788888888887666654 366788888888888765432 112677788
Q ss_pred cceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCC-CC-CC
Q 042336 829 LELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQ-IL-GN 906 (944)
Q Consensus 829 L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~-~l 906 (944)
|+.|+++++. +. ......|..+..|+..+++++......+..+..+++|+.|++++|. ++.+|.. +. .+
T Consensus 538 L~~L~L~~N~-l~-------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 538 LHILNLESNG-FD-------EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKVFGPAF 608 (680)
T ss_dssp CCEEECCSSC-CC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC-CCBCCHHHHHHHH
T ss_pred CCEEECCCCC-CC-------CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc-CCccChhHhcccc
Confidence 8888887654 21 2222346666777777777665554444445677888888888884 5555543 33 46
Q ss_pred CCcCeEEEecCcchh
Q 042336 907 TTLQMLKIYNCRILE 921 (944)
Q Consensus 907 ~~L~~L~l~~c~~l~ 921 (944)
++|+.+++++||...
T Consensus 609 ~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 609 RNLTELDMRFNPFDC 623 (680)
T ss_dssp TTCSEEECTTCCCCB
T ss_pred cccCEEEccCCCccc
Confidence 788889988887643
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1e-18 Score=190.58 Aligned_cols=270 Identities=19% Similarity=0.173 Sum_probs=148.0
Q ss_pred CCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccceeccCcccccccCccccCCC
Q 042336 554 KKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKELPDTCCELF 632 (944)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~ 632 (944)
++|+.|++.++.... ..+..|.++++|++|+|++|. +..+ |..++++++|++|+|++|.+..+|..+. .
T Consensus 54 ~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~ 123 (332)
T 2ft3_A 54 PDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNK----ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--S 123 (332)
T ss_dssp TTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSC----CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--T
T ss_pred CCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCc----cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--c
Confidence 455666665554321 112224555666666666655 3333 4555566666666666666555555544 5
Q ss_pred cccEEEecCccCCcccCc-ccccCCCCceeecccccccc---ccccccCCCCCCcCCceEecccccCCCCcccccccCcC
Q 042336 633 NLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDVNFVEY---MPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQ 708 (944)
Q Consensus 633 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 708 (944)
+|++|++++|. +..+|. .+..+++|++|+++.|.+.. .|..+..+ +|+.|. ...+
T Consensus 124 ~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~----l~~n--------------- 182 (332)
T 2ft3_A 124 SLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR----ISEA--------------- 182 (332)
T ss_dssp TCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB----CCSS---------------
T ss_pred cCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE----CcCC---------------
Confidence 56666666655 444443 25556666666665554432 22233333 444443 1111
Q ss_pred cccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEE
Q 042336 709 LNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDV 788 (944)
Q Consensus 709 L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 788 (944)
.+..+.. .+ .++|+.|++++|.+... .+..+..+++|+.|++
T Consensus 183 -----------~l~~l~~-------~~--~~~L~~L~l~~n~i~~~------------------~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 183 -----------KLTGIPK-------DL--PETLNELHLDHNKIQAI------------------ELEDLLRYSKLYRLGL 224 (332)
T ss_dssp -----------BCSSCCS-------SS--CSSCSCCBCCSSCCCCC------------------CTTSSTTCTTCSCCBC
T ss_pred -----------CCCccCc-------cc--cCCCCEEECCCCcCCcc------------------CHHHhcCCCCCCEEEC
Confidence 0111100 01 15778888887765543 2345667788888888
Q ss_pred eeCCCCCCCh-hhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCccccCccCccCcccccccccccc
Q 042336 789 WKYRGETLPS-WIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLD 867 (944)
Q Consensus 789 ~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~ 867 (944)
++|....++. ++..+++|+.|+|++|......+.++.+++|++|+++++. ++.++.. .|..+.
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~-------~~~~~~-------- 288 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVN-------DFCPVG-------- 288 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTT-------SSSCSS--------
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChh-------Hccccc--------
Confidence 8887666654 6778888888888888766433347778888888887654 2221111 111100
Q ss_pred ccccccccCCccccCcccceeeecccccc--cCCCCCCCCCCCcCeEEEecCc
Q 042336 868 EWEEWENEKNDITIMPQLNSLEIRDCHKL--KSLPHQILGNTTLQMLKIYNCR 918 (944)
Q Consensus 868 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~c~ 918 (944)
....+++|+.|++++|+.. ...|..+..+++|+.+++++|.
T Consensus 289 ----------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 ----------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ----------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ----------cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0012567888888888754 3344556678888888888774
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=7.5e-19 Score=191.51 Aligned_cols=117 Identities=20% Similarity=0.265 Sum_probs=77.4
Q ss_pred CeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccch-hhhcccccceeccCccccccc-CccccCCC
Q 042336 555 KLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPK-EIQKLIHLRYFKLHWLEIKEL-PDTCCELF 632 (944)
Q Consensus 555 ~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~l-P~~i~~L~ 632 (944)
+++.+.+.++.... ++. .-.+.|++|+|++|. +..++. .++++++|++|+|++|.+..+ |..+++++
T Consensus 32 ~l~~l~~~~~~l~~-----lp~--~~~~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-----VPK--DLPPDTALLDLQNNK----ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp ETTEEECTTSCCCS-----CCC--SCCTTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCeEEEecCCCccc-----cCc--cCCCCCeEEECCCCc----CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 56677666554321 111 112567777887777 555554 577777788888877777755 66777777
Q ss_pred cccEEEecCccCCcccCcccccCCCCceeecccccccccccc-ccCCCCCCcCC
Q 042336 633 NLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 633 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
+|++|++++|. +..+|..+. ++|++|+++.|.+..++.. ++.+++|+.|.
T Consensus 101 ~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 101 KLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp TCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred CCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 88888887776 667776654 6777777777766666543 56666776665
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1e-19 Score=196.24 Aligned_cols=248 Identities=15% Similarity=0.125 Sum_probs=169.0
Q ss_pred CcccEEEeccCCCccccc--ccchhhhcccccceeccCc-cccc-ccCccccCCCcccEEEecCccCCcccCcccccCCC
Q 042336 582 TCLRALKITRNSKENSIY--EIPKEIQKLIHLRYFKLHW-LEIK-ELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVN 657 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~--~lp~~i~~l~~Lr~L~Ls~-~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 657 (944)
.++++|+|+++.. .. .+|..++++++|++|+|++ +.+. .+|..++++++|++|++++|.....+|..+.++++
T Consensus 50 ~~l~~L~L~~~~l---~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNL---PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCC---SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCc---cCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 4789999999983 22 6899999999999999995 7766 88999999999999999999844589999999999
Q ss_pred Cceeeccccccc-cccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcc
Q 042336 658 LRHLIFDVNFVE-YMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELE 736 (944)
Q Consensus 658 L~~L~l~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 736 (944)
|++|+++.|.+. .+|..++.+++|++|. ...|...+..+ ..+.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~----L~~N~l~~~~p--------------------------------~~l~ 170 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGIT----FDGNRISGAIP--------------------------------DSYG 170 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEE----CCSSCCEEECC--------------------------------GGGG
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEE----CcCCcccCcCC--------------------------------HHHh
Confidence 999999888877 6788888888888886 22221111011 2233
Q ss_pred cCC-CcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCC-CCChhhhcCCCccEEEeecc
Q 042336 737 KKK-NLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGE-TLPSWIMSLNKLKKLELSFC 814 (944)
Q Consensus 737 ~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~ 814 (944)
.+. +|+.|+++.|.+.+. .+..+..++ |+.|++++|... ..|..+..+++|+.|+|++|
T Consensus 171 ~l~~~L~~L~L~~N~l~~~------------------~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGK------------------IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp CCCTTCCEEECCSSEEEEE------------------CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred hhhhcCcEEECcCCeeecc------------------CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 344 677777776644321 122222233 777777766543 34555666777777777777
Q ss_pred CCCCcCCCCCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccc
Q 042336 815 NKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCH 894 (944)
Q Consensus 815 ~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 894 (944)
.....++.+..+++|++|+++++. .....|..+..+++|+.|++++|+
T Consensus 232 ~l~~~~~~~~~l~~L~~L~Ls~N~--------------------------------l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 232 SLAFDLGKVGLSKNLNGLDLRNNR--------------------------------IYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EECCBGGGCCCCTTCCEEECCSSC--------------------------------CEECCCGGGGGCTTCCEEECCSSE
T ss_pred ceeeecCcccccCCCCEEECcCCc--------------------------------ccCcCChHHhcCcCCCEEECcCCc
Confidence 665555556666777777776543 111122233456777777777776
Q ss_pred cccCCCCCCCCCCCcCeEEEecCcch
Q 042336 895 KLKSLPHQILGNTTLQMLKIYNCRIL 920 (944)
Q Consensus 895 ~l~~lp~~~~~l~~L~~L~l~~c~~l 920 (944)
....+|.. ..+++|+.+++.+|+.+
T Consensus 280 l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred ccccCCCC-ccccccChHHhcCCCCc
Confidence 55566655 56777777777777654
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=5.3e-19 Score=192.82 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=72.1
Q ss_pred CCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCC-CCCCCCCcceeeecccccceEeCccccCccCccCccccc
Q 042336 782 NLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMP-PLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKH 860 (944)
Q Consensus 782 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~ 860 (944)
+|+.|++++|....+|..+ .++|+.|++++|......+ .+..+++|++|+++++. +. ...+..|..+..
T Consensus 173 ~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~-------~~~~~~~~~l~~ 242 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IR-------MIENGSLSFLPT 242 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CC-------CCCTTGGGGCTT
T ss_pred ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CC-------cCChhHhhCCCC
Confidence 5555666655555555443 2566666666665444332 25566666666666543 11 111112333333
Q ss_pred cccccccccccccccCCccccCcccceeeecccccccCCCCC-CCC------CCCcCeEEEecCcch
Q 042336 861 LIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQ-ILG------NTTLQMLKIYNCRIL 920 (944)
Q Consensus 861 L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~------l~~L~~L~l~~c~~l 920 (944)
|+..++.++... ..|..+..+++|+.|++++|+ ++.+|.. +.. .++|+.|++.+||..
T Consensus 243 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccc
Confidence 444444443322 334446688999999999986 5666533 222 467999999999864
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=3.4e-18 Score=186.28 Aligned_cols=289 Identities=15% Similarity=0.123 Sum_probs=194.7
Q ss_pred eEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhccccc
Q 042336 533 LRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHL 611 (944)
Q Consensus 533 ~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~L 611 (944)
.+.+.+.......+|..+ .++++.|++.++.... ..+..|.++++|++|+|++|. +..+ |..++++++|
T Consensus 33 l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITE----IKDGDFKNLKNLHTLILINNK----ISKISPGAFAPLVKL 102 (330)
T ss_dssp TTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSC----CCCBCTTTTTTCTTC
T ss_pred CeEEEecCCCccccCccC--CCCCeEEECCCCcCCE----eChhhhccCCCCCEEECCCCc----CCeeCHHHhcCCCCC
Confidence 344444444555455443 3789999999987532 122247899999999999998 6665 7889999999
Q ss_pred ceeccCcccccccCccccCCCcccEEEecCccCCcccCc-ccccCCCCceeecccccccc---ccccccCCCCCCcCCce
Q 042336 612 RYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDVNFVEY---MPKGIERLTCLRTLSEF 687 (944)
Q Consensus 612 r~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~~~ 687 (944)
++|+|++|.+..+|..+. .+|++|++++|. +..+|. .+.++++|++|+++.|.+.. .|..+..+++|+.|.
T Consensus 103 ~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~-- 177 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR-- 177 (330)
T ss_dssp CEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE--
T ss_pred CEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE--
Confidence 999999999999998876 799999999998 666554 57899999999998887653 345567777777765
Q ss_pred EecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCc
Q 042336 688 VVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNE 767 (944)
Q Consensus 688 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 767 (944)
...+.. . .+ .. .+ .++|+.|++++|.+...
T Consensus 178 --l~~n~l--------~------~l------------~~-------~~--~~~L~~L~l~~n~l~~~------------- 207 (330)
T 1xku_A 178 --IADTNI--------T------TI------------PQ-------GL--PPSLTELHLDGNKITKV------------- 207 (330)
T ss_dssp --CCSSCC--------C------SC------------CS-------SC--CTTCSEEECTTSCCCEE-------------
T ss_pred --CCCCcc--------c------cC------------Cc-------cc--cccCCEEECCCCcCCcc-------------
Confidence 222110 0 00 00 01 15788888888755432
Q ss_pred ccHHHHhccCCCCCCCceEEEeeCCCCCCC-hhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCcc
Q 042336 768 VSHEAICEALRPPPNLESLDVWKYRGETLP-SWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDE 846 (944)
Q Consensus 768 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 846 (944)
.+..+..+++|+.|++++|....++ .++..+++|+.|+|++|........+..+++|++|+++++. ++.++.
T Consensus 208 -----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~- 280 (330)
T 1xku_A 208 -----DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGS- 280 (330)
T ss_dssp -----CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCT-
T ss_pred -----CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccCh-
Confidence 1345667788999999988866654 36778899999999998766443458888999999998765 222211
Q ss_pred ccCccCccCccccccccccccccccccccCCccccCcccceeeeccccccc--CCCCCCCCCCCcCeEEEecC
Q 042336 847 FLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLK--SLPHQILGNTTLQMLKIYNC 917 (944)
Q Consensus 847 ~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c 917 (944)
..|.... .....+.|+.|++++|+... ..|..+..+.+|+.+++++|
T Consensus 281 ------~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 281 ------NDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ------TSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ------hhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 1121100 00134677778888777432 23445666778888888776
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=5.4e-18 Score=202.99 Aligned_cols=135 Identities=18% Similarity=0.217 Sum_probs=113.2
Q ss_pred CCCceEEEEEEeCCCCcch-hhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccch-hhh
Q 042336 529 SEEELRHSMLVFGNEASFP-VFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPK-EIQ 606 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~-~i~ 606 (944)
.+..++++.+..+.+..++ ..+.++++|++|+++++.... ..+..|.++++|++|+|++|. +..+|. .++
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~----l~~l~~~~f~ 121 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNP----IQSLALGAFS 121 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCC----CCEECGGGGT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCc----CCCCCHHHhc
Confidence 4668899999999888765 468899999999999987532 123348899999999999998 778774 579
Q ss_pred cccccceeccCcccccccCcc-ccCCCcccEEEecCccCCc--ccCcccccCCCCceeecccccccccc
Q 042336 607 KLIHLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLN--RLPQGVGKLVNLRHLIFDVNFVEYMP 672 (944)
Q Consensus 607 ~l~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~lp 672 (944)
+|.+|++|+|++|.+..+|.. +++|++|++|++++|. +. .+|..+..+++|++|+++.|.+..++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccc
Confidence 999999999999999988764 8999999999999997 54 46788899999999999888776654
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=2.4e-17 Score=186.75 Aligned_cols=304 Identities=20% Similarity=0.191 Sum_probs=166.1
Q ss_pred CCCceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcC-CcccEEEeccCCCcccccccchhhhc
Q 042336 529 SEEELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQF-TCLRALKITRNSKENSIYEIPKEIQK 607 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~-~~Lr~L~L~~~~~~~~~~~lp~~i~~ 607 (944)
.+..++.+.+..+.+..+|. ..++|+.|.+.++.... +..+ ++|++|++++|. +..+| .+++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~---------l~~~~~~L~~L~L~~n~----l~~lp-~~~~ 151 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA---------LSDLPPLLEYLGVSNNQ----LEKLP-ELQN 151 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC---------CCSCCTTCCEEECCSSC----CSSCC-CCTT
T ss_pred CcCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCc---------ccCCCCCCCEEECcCCC----CCCCc-ccCC
Confidence 34567778887777665543 24788888888775322 1112 578888888887 66677 5888
Q ss_pred ccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCce
Q 042336 608 LIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEF 687 (944)
Q Consensus 608 l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~ 687 (944)
+++|++|++++|.+..+|..+ .+|++|++++|. +..+| .++.+++|++|+++.|.+..+|... ++|+.|.
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~-- 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIV-- 221 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEE--
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEE--
Confidence 888888888888888877654 488888888886 66777 5888888888888887777776543 3566655
Q ss_pred EecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCc
Q 042336 688 VVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNE 767 (944)
Q Consensus 688 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 767 (944)
...|... ..+ .++.+++|+ .+.+.+- .+.... ...++|+.|+++.|.+.+.
T Consensus 222 --l~~n~l~-~lp-~~~~l~~L~----~L~l~~N-~l~~l~-------~~~~~L~~L~l~~N~l~~l------------- 272 (454)
T 1jl5_A 222 --AGNNILE-ELP-ELQNLPFLT----TIYADNN-LLKTLP-------DLPPSLEALNVRDNYLTDL------------- 272 (454)
T ss_dssp --CCSSCCS-SCC-CCTTCTTCC----EEECCSS-CCSSCC-------SCCTTCCEEECCSSCCSCC-------------
T ss_pred --CcCCcCC-ccc-ccCCCCCCC----EEECCCC-cCCccc-------ccccccCEEECCCCccccc-------------
Confidence 3333332 222 244444444 3333221 111111 0125677777777754431
Q ss_pred ccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCccc
Q 042336 768 VSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEF 847 (944)
Q Consensus 768 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 847 (944)
+. .+++|+.|++++|....+|.. .++|+.|++++|.... ++.+ .++|++|+++++. +..+
T Consensus 273 ------~~---~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~-i~~~--~~~L~~L~Ls~N~-l~~l---- 332 (454)
T 1jl5_A 273 ------PE---LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRS-LCDL--PPSLEELNVSNNK-LIEL---- 332 (454)
T ss_dssp ------CC---CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSE-ECCC--CTTCCEEECCSSC-CSCC----
T ss_pred ------Cc---ccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCc-ccCC--cCcCCEEECCCCc-cccc----
Confidence 11 125666777766665444321 2466666666664432 2211 1366666666543 1111
Q ss_pred cCccCccCccccccccccccccccccccCCccccCcccceeeeccccccc--CCCCCCCCC-------------CCcCeE
Q 042336 848 LGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLK--SLPHQILGN-------------TTLQML 912 (944)
Q Consensus 848 ~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l-------------~~L~~L 912 (944)
+..+++|+.|.+. ++... ..|. .+++|+.|++++|+... .+|..+.++ ++|+.|
T Consensus 333 ----p~~~~~L~~L~L~---~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L 401 (454)
T 1jl5_A 333 ----PALPPRLERLIAS---FNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401 (454)
T ss_dssp ----CCCCTTCCEEECC---SSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------
T ss_pred ----cccCCcCCEEECC---CCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEE
Confidence 1123444444433 22221 2222 35667777777665444 455555554 667777
Q ss_pred EEecCcc
Q 042336 913 KIYNCRI 919 (944)
Q Consensus 913 ~l~~c~~ 919 (944)
++++|+.
T Consensus 402 ~ls~N~l 408 (454)
T 1jl5_A 402 HVETNPL 408 (454)
T ss_dssp -------
T ss_pred ECCCCcC
Confidence 7776654
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=3.2e-17 Score=196.25 Aligned_cols=132 Identities=24% Similarity=0.248 Sum_probs=108.9
Q ss_pred CCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcccc
Q 042336 543 EASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEI 621 (944)
Q Consensus 543 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i 621 (944)
...+|..+. ++++.|+++++.... ..+..|.++++|++|+|++|. +..+| .+|++|++|++|+|++|.+
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~----i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCc----CCCcChhHhcCCCCCCEEEccCCcC
Confidence 444565442 589999999987532 123348999999999999998 77776 4689999999999999999
Q ss_pred cccCcc-ccCCCcccEEEecCccCCcccCc-ccccCCCCceeecccccccc--ccccccCCCCCCcCC
Q 042336 622 KELPDT-CCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDVNFVEY--MPKGIERLTCLRTLS 685 (944)
Q Consensus 622 ~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~ 685 (944)
+.+|.. +++|.+|++|++++|. +..+|. .+++|++|++|+++.|.+.. +|..++.+++|++|.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 998864 8999999999999998 777775 58999999999999888765 467788899999886
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=4.6e-20 Score=211.57 Aligned_cols=357 Identities=16% Similarity=0.128 Sum_probs=217.8
Q ss_pred CceEEEEEEeCCCCcch--hhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccc-cchhhh-
Q 042336 531 EELRHSMLVFGNEASFP--VFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYE-IPKEIQ- 606 (944)
Q Consensus 531 ~~~r~lsl~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~-lp~~i~- 606 (944)
..++++.+..+.+...+ ..+..+++|++|.+.++.........++..+..+++|++|+|++|. +.. .+..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~----l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE----LGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC----CHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc----CChHHHHHHHH
Confidence 45677888777765422 2366788999999998875422223456668888999999999988 433 233333
Q ss_pred ccc----ccceeccCccccc-----ccCccccCCCcccEEEecCccCCcc-cCccc-----ccCCCCceeecccccccc-
Q 042336 607 KLI----HLRYFKLHWLEIK-----ELPDTCCELFNLQTIEIEGCYNLNR-LPQGV-----GKLVNLRHLIFDVNFVEY- 670 (944)
Q Consensus 607 ~l~----~Lr~L~Ls~~~i~-----~lP~~i~~L~~L~~L~L~~~~~l~~-lp~~i-----~~L~~L~~L~l~~~~~~~- 670 (944)
.+. +|++|+|++|.+. .+|..+.++++|++|++++|. +.. .+..+ ..+++|++|+++.|.+..
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 355 6999999999877 568888999999999999987 432 22222 235679999997776653
Q ss_pred ----ccccccCCCCCCcCCceEecccccCCCCccccccc-----CcCcccCCceEEEcCccCcCCh-hhhhhhhcccCCC
Q 042336 671 ----MPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGG-----LRQLNHLRGSLRIRGLRNVTDV-HEAKIVELEKKKN 740 (944)
Q Consensus 671 ----lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~-----l~~L~~L~~~l~i~~l~~~~~~-~~~~~~~l~~~~~ 740 (944)
++..+..+++|++|+ ...+.........+.. ..+|+ .+.+.+.. +... .......+..+++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~----L~~n~i~~~~~~~l~~~l~~~~~~L~----~L~L~~n~-l~~~~~~~l~~~l~~~~~ 228 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELT----VSNNDINEAGVRVLCQGLKDSPCQLE----ALKLESCG-VTSDNCRDLCGIVASKAS 228 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEE----CCSSBCHHHHHHHHHHHHHHSCCCCC----EEECTTSC-CBTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhCCCCCEEE----CcCCCcchHHHHHHHHHHhcCCCCce----EEEccCCC-CcHHHHHHHHHHHHhCCC
Confidence 455566778888876 3333221111111111 22333 44444332 1211 1123445667889
Q ss_pred cCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhc-cCCCCCCCceEEEeeCCCCC-----CChhhhcCCCccEEEeecc
Q 042336 741 LLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICE-ALRPPPNLESLDVWKYRGET-----LPSWIMSLNKLKKLELSFC 814 (944)
Q Consensus 741 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~L~~~ 814 (944)
|++|++++|.+.+.. ...+.. ....+++|+.|++++|.... ++..+..+++|++|+|++|
T Consensus 229 L~~L~Ls~n~l~~~~--------------~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 229 LRELALGSNKLGDVG--------------MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp CCEEECCSSBCHHHH--------------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred ccEEeccCCcCChHH--------------HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 999999888543210 111222 23357899999999987655 5667778899999999998
Q ss_pred CCCCc----CCC--CCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccc-----cCc
Q 042336 815 NKFEI----MPP--LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDIT-----IMP 883 (944)
Q Consensus 815 ~~~~~----l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~-----~l~ 883 (944)
...+. +.. ....++|++|++++|. +. .......+..+..++.|+..++.++......+..+. .++
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~---~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 370 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCS-FT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CB---GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCC-Cc---hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC
Confidence 65322 111 1234689999998875 21 110000111233334444445554433221111111 267
Q ss_pred ccceeeeccccccc----CCCCCCCCCCCcCeEEEecCcc
Q 042336 884 QLNSLEIRDCHKLK----SLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 884 ~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
+|+.|++++|.... .+|..+..+++|++|++++|+.
T Consensus 371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 89999999986432 5666667788999999999875
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=2.1e-17 Score=187.32 Aligned_cols=336 Identities=17% Similarity=0.116 Sum_probs=133.3
Q ss_pred CCceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcC-------------CcccEEEeccCCCcc
Q 042336 530 EEELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQF-------------TCLRALKITRNSKEN 596 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~-------------~~Lr~L~L~~~~~~~ 596 (944)
....+.+.+..+.++.+|..+.++++|+.|++.++.... .++..+.++ ..++.|++++|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~--- 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWER----NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG--- 82 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHH----TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC---
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccc----cCCcccccchhcchhhhhhhhccCCCEEEecCCc---
Confidence 345677777777777788888888899888887754210 011112222 234667777666
Q ss_pred cccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccccccccc
Q 042336 597 SIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIE 676 (944)
Q Consensus 597 ~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~ 676 (944)
+..+|.. .++|++|++++|.+..+|..+ .+|++|++++|. +..+|.. .++|++|+++.|.+..+| .++
T Consensus 83 -l~~lp~~---~~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~ 150 (454)
T 1jl5_A 83 -LSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEKLP-ELQ 150 (454)
T ss_dssp -CSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSSCC-CCT
T ss_pred -cccCCCC---cCCCCEEEccCCcCCcccccc---CCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCCCc-ccC
Confidence 4444441 245666666666665555432 445555555543 3333321 134555555444444444 344
Q ss_pred CCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCch
Q 042336 677 RLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEED 756 (944)
Q Consensus 677 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 756 (944)
.+++|++|+ ...|...+ .+..+. +|+ .+.+... .+... ..+..+++|+.|++++|.+.+...
T Consensus 151 ~l~~L~~L~----l~~N~l~~-lp~~~~---~L~----~L~L~~n-~l~~l-----~~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 151 NSSFLKIID----VDNNSLKK-LPDLPP---SLE----FIAAGNN-QLEEL-----PELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp TCTTCCEEE----CCSSCCSC-CCCCCT---TCC----EEECCSS-CCSSC-----CCCTTCTTCCEEECCSSCCSSCCC
T ss_pred CCCCCCEEE----CCCCcCcc-cCCCcc---ccc----EEECcCC-cCCcC-----ccccCCCCCCEEECCCCcCCcCCC
Confidence 444444443 22222111 111111 111 1111110 00000 112333344444444333221100
Q ss_pred hhh---hhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceee
Q 042336 757 EEE---EVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLE 833 (944)
Q Consensus 757 ~~~---~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 833 (944)
... ......+. ...++ .+..+++|+.|++++|....+|.. +++|+.|++++|...+ +|. .+++|+.|+
T Consensus 213 ~~~~L~~L~l~~n~--l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~--~~~~L~~L~ 283 (454)
T 1jl5_A 213 LPLSLESIVAGNNI--LEELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPE--LPQSLTFLD 283 (454)
T ss_dssp CCTTCCEEECCSSC--CSSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEE
T ss_pred CcCcccEEECcCCc--CCccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCc--ccCcCCEEE
Confidence 000 00000000 00011 244455566666666555545432 3555566665554332 332 124555555
Q ss_pred ecccccceEeCcc---c-----cCccCccCccc-cccccccccccccccccCCccccCcccceeeecccccccCCCCCCC
Q 042336 834 VFALQSVKRVGDE---F-----LGIEIVAFPKL-KHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQIL 904 (944)
Q Consensus 834 L~~~~~l~~~~~~---~-----~~~~~~~f~~L-~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 904 (944)
++++. +..++.. + .......++.+ ..|+..++.++.... .|. .+++|+.|++++|. ++.+|.
T Consensus 284 ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~-l~~lp~--- 354 (454)
T 1jl5_A 284 VSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNH-LAEVPE--- 354 (454)
T ss_dssp CCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCCC---
T ss_pred CcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc---cCCcCCEEECCCCc-cccccc---
Confidence 55543 1111100 0 00000011111 223333344433222 232 46899999999884 667887
Q ss_pred CCCCcCeEEEecCcch
Q 042336 905 GNTTLQMLKIYNCRIL 920 (944)
Q Consensus 905 ~l~~L~~L~l~~c~~l 920 (944)
.+++|++|++++|+..
T Consensus 355 ~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CCTTCCEEECCSSCCS
T ss_pred hhhhccEEECCCCCCC
Confidence 4789999999998763
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=180.06 Aligned_cols=251 Identities=18% Similarity=0.150 Sum_probs=168.9
Q ss_pred CcccEEEeccCCCcccccccch-hhhcccccceeccCcccccccC-ccccCCCcccEEEecCccCCcccCcc-cccCCCC
Q 042336 582 TCLRALKITRNSKENSIYEIPK-EIQKLIHLRYFKLHWLEIKELP-DTCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNL 658 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L 658 (944)
++|++|++++|. +..+|. .++++++|++|+|++|.+..++ ..++++++|++|++++|. +..+|.. +.++++|
T Consensus 52 ~~L~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNR----ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTC
T ss_pred ccCcEEECCCCc----CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccC
Confidence 578888888887 666665 6888888888888888887664 558888888888888887 6777765 7888888
Q ss_pred ceeeccccccccccc--cccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcc
Q 042336 659 RHLIFDVNFVEYMPK--GIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELE 736 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 736 (944)
++|+++.|.+..+|. .++.+++|++|+ ...|.. +. . .....+.
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~----l~~n~~-------------~~----~--------------~~~~~~~ 171 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILR----VGNMDT-------------FT----K--------------IQRKDFA 171 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEE----EEESSS-------------CC----E--------------ECTTTTT
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEE----CCCCcc-------------cc----c--------------cCHHHcc
Confidence 888888887777776 466777777765 222100 00 0 0012345
Q ss_pred cCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhh-cCCCccEEEeeccC
Q 042336 737 KKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIM-SLNKLKKLELSFCN 815 (944)
Q Consensus 737 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~ 815 (944)
.+++|+.|++++|.+... .+..+..+++|+.|++++|....+|..+. .+++|+.|++++|.
T Consensus 172 ~l~~L~~L~l~~n~l~~~------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSY------------------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp TCCEEEEEEEEETTCCEE------------------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred CCCCCCEEECCCCCcCcc------------------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 567788888888855432 24556677888999998888777766543 58889999998887
Q ss_pred CCCcCCC----CCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeec
Q 042336 816 KFEIMPP----LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIR 891 (944)
Q Consensus 816 ~~~~l~~----l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 891 (944)
.....+. ....+.++.+.+.++. +.+ +. ....+..+..+++|+.|+++
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~------------------------l~~---~~-l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVK------------------------ITD---ES-LFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCB------------------------CCH---HH-HHHHHHHHHTCTTCCEEECC
T ss_pred cccccccccccccccchhhcccccccc------------------------ccC---cc-hhhhHHHHhcccCCCEEECC
Confidence 5543211 2233444444444321 100 00 00112224468899999999
Q ss_pred ccccccCCCCCC-CCCCCcCeEEEecCcc
Q 042336 892 DCHKLKSLPHQI-LGNTTLQMLKIYNCRI 919 (944)
Q Consensus 892 ~c~~l~~lp~~~-~~l~~L~~L~l~~c~~ 919 (944)
+|. ++.+|..+ ..+++|++|++++|+.
T Consensus 286 ~N~-l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 286 RNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCC-CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 985 67888775 7899999999999875
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=179.77 Aligned_cols=260 Identities=17% Similarity=0.153 Sum_probs=175.5
Q ss_pred eCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccceeccCc
Q 042336 540 FGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHW 618 (944)
Q Consensus 540 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~ 618 (944)
.+....+|..+. ++|++|++.++.... ..+..|.++++|++|+|++|. +..+ |..++++++|++|+|++
T Consensus 40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 40 SGSLNSIPSGLT--EAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNG----INTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp STTCSSCCTTCC--TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECCS
T ss_pred CCCccccccccc--ccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCc----cCccCHhhcCCCCCCCEEECCC
Confidence 344444555433 588888888876432 112237788888888888887 5555 45688888888888888
Q ss_pred ccccccCcc-ccCCCcccEEEecCccCCcccCc--ccccCCCCceeecccc-cccccc-ccccCCCCCCcCCceEecccc
Q 042336 619 LEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQ--GVGKLVNLRHLIFDVN-FVEYMP-KGIERLTCLRTLSEFVVVSRS 693 (944)
Q Consensus 619 ~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~-~~~~lp-~~i~~l~~L~~L~~~~~~~~~ 693 (944)
|.+..+|.. ++++++|++|++++|. +..+|. .+.++++|++|+++.| .+..++ ..++.+++|++|+ ...|
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~----l~~n 184 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE----IDAS 184 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE----EEET
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE----CCCC
Confidence 888888776 7888888888888887 777776 6788888888888666 466664 4577788888776 4444
Q ss_pred cCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHH
Q 042336 694 DKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAI 773 (944)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (944)
...+..+..+..+++|+.| .+..-. +.... ...+..+++|+.|++++|.+.+.... .
T Consensus 185 ~l~~~~~~~l~~l~~L~~L----~l~~n~-l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~---------------~ 241 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHL----ILHMKQ-HILLL---EIFVDVTSSVECLELRDTDLDTFHFS---------------E 241 (353)
T ss_dssp TCCEECTTTTTTCSEEEEE----EEECSC-STTHH---HHHHHHTTTEEEEEEESCBCTTCCCC----------------
T ss_pred CcCccCHHHHhccccCCee----cCCCCc-cccch---hhhhhhcccccEEECCCCcccccccc---------------c
Confidence 4444344556666666543 332211 12211 12334578899999999876543100 0
Q ss_pred hccCCCCCCCceEEEeeCCCC-----CCChhhhcCCCccEEEeeccCCCCcCCC--CCCCCCcceeeecccc
Q 042336 774 CEALRPPPNLESLDVWKYRGE-----TLPSWIMSLNKLKKLELSFCNKFEIMPP--LGKLPSLELLEVFALQ 838 (944)
Q Consensus 774 ~~~l~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 838 (944)
.........++.++++++... .+|.++..+++|+.|+|++|.... +|. ++.+++|++|++++++
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCC
Confidence 112234567888888876643 367788899999999999997664 444 5889999999998765
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=3e-17 Score=176.71 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=42.8
Q ss_pred CcccEEEeccCCCcccccccchh-hhcccccceeccCccccccc---CccccCCCcccEEEecCccCCcccCcccccCCC
Q 042336 582 TCLRALKITRNSKENSIYEIPKE-IQKLIHLRYFKLHWLEIKEL---PDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVN 657 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~l---P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 657 (944)
++|++|+|++|. +..+|.. ++++++|++|+|++|.+..+ |..+..+.+|++|++++|. +..+|..+..+++
T Consensus 28 ~~l~~L~L~~n~----l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTT
T ss_pred CCCCEEECCCCc----cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCC
Confidence 345555555555 4444433 34555555555555554432 3444445555555555554 4445555555555
Q ss_pred Cceeeccccccccc
Q 042336 658 LRHLIFDVNFVEYM 671 (944)
Q Consensus 658 L~~L~l~~~~~~~l 671 (944)
|++|+++.|.+..+
T Consensus 103 L~~L~l~~n~l~~~ 116 (306)
T 2z66_A 103 LEHLDFQHSNLKQM 116 (306)
T ss_dssp CCEEECTTSEEESS
T ss_pred CCEEECCCCccccc
Confidence 55555554444443
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=179.73 Aligned_cols=110 Identities=23% Similarity=0.234 Sum_probs=61.1
Q ss_pred cCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccceEeCccccCccCcc
Q 042336 776 ALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSVKRVGDEFLGIEIVA 854 (944)
Q Consensus 776 ~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 854 (944)
.+..+++|+.|++++|....+|. +..+++|+.|+|++|......+. +..+++|+.|.+.++.
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~---------------- 242 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ---------------- 242 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----------------
T ss_pred hhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc----------------
Confidence 34556667777777666666653 45566666666666654443332 5566666666665543
Q ss_pred CccccccccccccccccccccCCccccCcccceeeecccccccCCCCC-CCCCCCcCeEEEecCcc
Q 042336 855 FPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQ-ILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 855 f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 919 (944)
.....+..+..+++|+.|+|++|. ++.+|.. +..+++|+.|++++||.
T Consensus 243 ----------------l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 243 ----------------IQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ----------------CCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ----------------eeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCCc
Confidence 222222233355666666666663 4444432 44566666666666553
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=2.4e-16 Score=183.99 Aligned_cols=237 Identities=20% Similarity=0.143 Sum_probs=137.1
Q ss_pred CcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCcee
Q 042336 582 TCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHL 661 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 661 (944)
++|++|+|++|. +..+|. .+++|++|+|++|.++.+|. .+++|++|++++|. +..+|. .+++|++|
T Consensus 61 ~~L~~L~L~~N~----l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNN----LTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCC----CSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCC----CCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEE
Confidence 456666666665 445554 35566666666666666664 45666666666655 555555 45566666
Q ss_pred eccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCc
Q 042336 662 IFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNL 741 (944)
Q Consensus 662 ~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L 741 (944)
+++.|.+..+|..+ ++|++|+ ...|...+ +. ....+|
T Consensus 127 ~L~~N~l~~lp~~l---~~L~~L~----Ls~N~l~~--------------------------l~----------~~~~~L 163 (622)
T 3g06_A 127 WIFGNQLTSLPVLP---PGLQELS----VSDNQLAS--------------------------LP----------ALPSEL 163 (622)
T ss_dssp ECCSSCCSCCCCCC---TTCCEEE----CCSSCCSC--------------------------CC----------CCCTTC
T ss_pred ECCCCCCCcCCCCC---CCCCEEE----CcCCcCCC--------------------------cC----------CccCCC
Confidence 66665555555432 4444443 11111110 00 012456
Q ss_pred CcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCC
Q 042336 742 LHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMP 821 (944)
Q Consensus 742 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 821 (944)
+.|+++.|.+... + ..+++|+.|++++|....+|.. +++|+.|++++|... .+|
T Consensus 164 ~~L~L~~N~l~~l-------------------~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~ 217 (622)
T 3g06_A 164 CKLWAYNNQLTSL-------------------P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLP 217 (622)
T ss_dssp CEEECCSSCCSCC-------------------C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred CEEECCCCCCCCC-------------------c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccC
Confidence 6777766644321 1 2356777888877776666653 467778888777544 344
Q ss_pred CCCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCC
Q 042336 822 PLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPH 901 (944)
Q Consensus 822 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 901 (944)
. .+++|+.|+++++. ++.++ ..+++|+.|.+. ++.. ...|. .+++|+.|++++|. ++.+|.
T Consensus 218 ~--~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls---~N~L-~~lp~---~~~~L~~L~Ls~N~-L~~lp~ 278 (622)
T 3g06_A 218 A--LPSGLKELIVSGNR-LTSLP--------VLPSELKELMVS---GNRL-TSLPM---LPSGLLSLSVYRNQ-LTRLPE 278 (622)
T ss_dssp C--CCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECC---SSCC-SCCCC---CCTTCCEEECCSSC-CCSCCG
T ss_pred C--CCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECC---CCCC-CcCCc---ccccCcEEeCCCCC-CCcCCH
Confidence 3 24677888777653 22111 234555555443 3322 22332 56788888888884 668888
Q ss_pred CCCCCCCcCeEEEecCcch
Q 042336 902 QILGNTTLQMLKIYNCRIL 920 (944)
Q Consensus 902 ~~~~l~~L~~L~l~~c~~l 920 (944)
.+.++++|+.|++++|+.-
T Consensus 279 ~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGGGSCTTCEEECCSCCCC
T ss_pred HHhhccccCEEEecCCCCC
Confidence 8888888888888888763
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=2.1e-16 Score=180.12 Aligned_cols=109 Identities=27% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccceEeCccccCccCccC
Q 042336 777 LRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAF 855 (944)
Q Consensus 777 l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f 855 (944)
+..+++|+.|++++|....+|. +..+++|+.|+|++|......|. +..+++|+.|.+.++.
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~----------------- 253 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ----------------- 253 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-----------------
T ss_pred ccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-----------------
Confidence 4445566666666665555542 34555566666665554443332 4555555555555432
Q ss_pred ccccccccccccccccccccCCccccCcccceeeecccccccCCCCC-CCCCCCcCeEEEecCcc
Q 042336 856 PKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQ-ILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 856 ~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 919 (944)
.....+..+..+++|+.|+|++|. +..+|.. +..+++|+.|++++||.
T Consensus 254 ---------------l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 254 ---------------VSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ---------------CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ---------------CceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCCc
Confidence 222223334456677777777663 4455433 45566777777776653
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=4.6e-17 Score=175.94 Aligned_cols=221 Identities=16% Similarity=0.132 Sum_probs=120.3
Q ss_pred HHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCccc
Q 042336 574 LQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGV 652 (944)
Q Consensus 574 l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i 652 (944)
+..++..+++|++|+|++|. +..++ ..++.+++|++|+|++|.+..+++ +..+++|++|++++|. +..+|
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~--- 96 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL--- 96 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSC----CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE---
T ss_pred HHHHhccCCCCCEEECcCCc----cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc---
Confidence 34445556667777777766 44443 566677777777777777665554 6667777777777765 55444
Q ss_pred ccCCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhh
Q 042336 653 GKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKI 732 (944)
Q Consensus 653 ~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~ 732 (944)
.+++|++|+++.|.+..++.. .+++|++|. ...|......+..+..+.+|+.| .+..- .+.. ...
T Consensus 97 -~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~----l~~N~l~~~~~~~~~~l~~L~~L----~Ls~N-~l~~---~~~ 161 (317)
T 3o53_A 97 -VGPSIETLHAANNNISRVSCS--RGQGKKNIY----LANNKITMLRDLDEGCRSRVQYL----DLKLN-EIDT---VNF 161 (317)
T ss_dssp -ECTTCCEEECCSSCCSEEEEC--CCSSCEEEE----CCSSCCCSGGGBCTGGGSSEEEE----ECTTS-CCCE---EEG
T ss_pred -CCCCcCEEECCCCccCCcCcc--ccCCCCEEE----CCCCCCCCccchhhhccCCCCEE----ECCCC-CCCc---ccH
Confidence 236677777766666655533 244555554 33333322222233333333322 11110 0000 001
Q ss_pred hhc-ccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEe
Q 042336 733 VEL-EKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLEL 811 (944)
Q Consensus 733 ~~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L 811 (944)
..+ ..+++|+.|++++|.+... .....+++|+.|++++|....+|..+..+++|+.|+|
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~--------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV--------------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE--------------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred HHHhhccCcCCEEECCCCcCccc--------------------ccccccccCCEEECCCCcCCcchhhhcccCcccEEEC
Confidence 112 2456677777776644321 1223356777777777776666666666777777777
Q ss_pred eccCCCCcCCCCCCCCCcceeeecccc
Q 042336 812 SFCNKFEIMPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 812 ~~~~~~~~l~~l~~l~~L~~L~L~~~~ 838 (944)
++|......+.+..+++|+.|+++++.
T Consensus 222 ~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 222 RNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCCcccchhhHhhcCCCCCEEEccCCC
Confidence 777555433336666777777776544
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=3.1e-16 Score=178.69 Aligned_cols=197 Identities=26% Similarity=0.306 Sum_probs=140.6
Q ss_pred CcccEEEeccCCCccccccc-chhhhcccccceeccCcccccccC-ccccCCCcccEEEecCccCCcccCcc-cccCCCC
Q 042336 582 TCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKELP-DTCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNL 658 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L 658 (944)
++|++|+|++|. +..+ |..++++++|++|+|++|.+..++ ..+.++.+|++|+|++|. +..+|.. +..+++|
T Consensus 75 ~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENN----IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTC
T ss_pred CCccEEECcCCc----CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCC
Confidence 467788888777 5554 466777888888888888877554 567778888888888876 6666554 6778888
Q ss_pred ceeeccccccccccc-cccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhccc
Q 042336 659 RHLIFDVNFVEYMPK-GIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEK 737 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 737 (944)
++|+++.|.+..+|. .+.++++|+.|. ... +..+..+ . ...+..
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~----l~~-------------~~~l~~i----~--------------~~~~~~ 194 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLD----LGE-------------LKKLEYI----S--------------EGAFEG 194 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEE----CCC-------------CTTCCEE----C--------------TTTTTT
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEe----CCC-------------CCCcccc----C--------------hhhccC
Confidence 888887777777765 366667776664 111 1111100 0 023455
Q ss_pred CCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCC-ChhhhcCCCccEEEeeccCC
Q 042336 738 KKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETL-PSWIMSLNKLKKLELSFCNK 816 (944)
Q Consensus 738 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~ 816 (944)
+++|+.|+++.|.+... ..+..+++|+.|+|++|....+ |.++..+++|+.|+|++|..
T Consensus 195 l~~L~~L~L~~n~l~~~--------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDM--------------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp CTTCCEEECTTSCCSSC--------------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCccccc--------------------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 67888888888855432 2466788999999999987665 66788999999999999987
Q ss_pred CCcCCC-CCCCCCcceeeecccc
Q 042336 817 FEIMPP-LGKLPSLELLEVFALQ 838 (944)
Q Consensus 817 ~~~l~~-l~~l~~L~~L~L~~~~ 838 (944)
....+. +..+++|+.|+|+++.
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC
T ss_pred ceECHHHhcCCCCCCEEECCCCc
Confidence 665444 8889999999999874
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=4.9e-16 Score=176.30 Aligned_cols=197 Identities=24% Similarity=0.295 Sum_probs=138.0
Q ss_pred CcccEEEeccCCCcccccccc-hhhhcccccceeccCcccccccC-ccccCCCcccEEEecCccCCcccCc-ccccCCCC
Q 042336 582 TCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELP-DTCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNL 658 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L 658 (944)
+++++|+|++|. +..++ ..+.++++|++|+|++|.+..++ ..+.++.+|++|+|++|. +..+|. .+..+++|
T Consensus 64 ~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQ----IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCC----CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSC
T ss_pred CCCcEEEccCCc----CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccC
Confidence 467777777777 55544 56777777888888877777555 457777788888887776 666655 46777788
Q ss_pred ceeeccccccccccc-cccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhccc
Q 042336 659 RHLIFDVNFVEYMPK-GIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEK 737 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 737 (944)
++|+++.|.+..+|. .+..+++|+.|. ...+ ..+..+ ....+..
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~----l~~~-------------~~l~~i------------------~~~~~~~ 183 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLD----LGEL-------------KRLSYI------------------SEGAFEG 183 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEE----CCCC-------------TTCCEE------------------CTTTTTT
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeC----CCCC-------------CCccee------------------Ccchhhc
Confidence 888887777776665 356666666664 1110 011000 0023455
Q ss_pred CCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCC-ChhhhcCCCccEEEeeccCC
Q 042336 738 KKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETL-PSWIMSLNKLKKLELSFCNK 816 (944)
Q Consensus 738 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~ 816 (944)
+++|+.|++++|.+... ..+..+++|+.|+|++|....+ |..+..+++|+.|+|++|..
T Consensus 184 l~~L~~L~L~~n~l~~~--------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLREI--------------------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp CSSCCEEECTTSCCSSC--------------------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ccccCeecCCCCcCccc--------------------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 67888888888755431 2467788999999999987665 66788999999999999987
Q ss_pred CCcCCC-CCCCCCcceeeecccc
Q 042336 817 FEIMPP-LGKLPSLELLEVFALQ 838 (944)
Q Consensus 817 ~~~l~~-l~~l~~L~~L~L~~~~ 838 (944)
....+. +..+++|+.|+|+++.
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSC
T ss_pred eEEChhhhcCCCCCCEEECCCCC
Confidence 665444 8889999999999875
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.2e-16 Score=172.09 Aligned_cols=242 Identities=17% Similarity=0.128 Sum_probs=176.2
Q ss_pred EEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceec
Q 042336 536 SMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFK 615 (944)
Q Consensus 536 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~ 615 (944)
+......+..+|..+ .++|+.|.+.++.... .....|.++++|++|+|++|.... +...|..+..+++|++|+
T Consensus 12 l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~----i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI--PSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSSNGLSF-KGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EECCSSCCSSCCSCC--CTTCCEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCE-EEEEEHHHHSCSCCCEEE
T ss_pred EEcCCCCcccCCCCC--CCCCCEEECCCCccCc----cCHhHhhccccCCEEECCCCccCc-ccCcccccccccccCEEE
Confidence 333444455455543 3799999999987532 123347899999999999998311 222367788899999999
Q ss_pred cCcccccccCccccCCCcccEEEecCccCCcccCc--ccccCCCCceeecccccccccc-ccccCCCCCCcCCceEeccc
Q 042336 616 LHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQ--GVGKLVNLRHLIFDVNFVEYMP-KGIERLTCLRTLSEFVVVSR 692 (944)
Q Consensus 616 Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~ 692 (944)
|++|.+..+|..+..+++|++|++++|. +..+|. .+..+++|++|+++.|.+...+ ..+..+++|++|. ...
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~~ 159 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK----MAG 159 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE----CTT
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE----CCC
Confidence 9999999999999999999999999998 776664 7899999999999888776554 4467777777775 222
Q ss_pred ccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHH
Q 042336 693 SDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEA 772 (944)
Q Consensus 693 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (944)
+...+ ......+..+++|+.|++++|.+...
T Consensus 160 n~l~~-------------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------ 190 (306)
T 2z66_A 160 NSFQE-------------------------------NFLPDIFTELRNLTFLDLSQCQLEQL------------------ 190 (306)
T ss_dssp CEEGG-------------------------------GEECSCCTTCTTCCEEECTTSCCCEE------------------
T ss_pred Ccccc-------------------------------ccchhHHhhCcCCCEEECCCCCcCCc------------------
Confidence 11000 00012345567888889888865432
Q ss_pred HhccCCCCCCCceEEEeeCCCCCCCh-hhhcCCCccEEEeeccCCCCcCCC-CCCCC-Ccceeeecccc
Q 042336 773 ICEALRPPPNLESLDVWKYRGETLPS-WIMSLNKLKKLELSFCNKFEIMPP-LGKLP-SLELLEVFALQ 838 (944)
Q Consensus 773 ~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~-~L~~L~L~~~~ 838 (944)
.+..+..+++|+.|++++|....++. .+..+++|+.|+|++|......+. +..+| +|++|++++++
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 23456677899999999988776654 567889999999999987765554 67775 89999998765
No 64
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=4.1e-15 Score=163.50 Aligned_cols=294 Identities=13% Similarity=0.103 Sum_probs=180.4
Q ss_pred ccCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC------C
Q 042336 170 INVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF------D 243 (944)
Q Consensus 170 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~ 243 (944)
..+..|+||+++++++.+++.. + +++.|+|++|+|||||++++++.. . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3456799999999999999852 1 589999999999999999998742 1 6777765432 5
Q ss_pred HHHHHHHHHHHhhC----------------CCC--CCCCHHHHHHHHHHHhcC-CceEEEeCCCCccCc-------cChh
Q 042336 244 EYRVAKAIIEALEG----------------SAP--NLGELNSLLQHICLSITG-KKFLLVLDDVWTEDY-------SKWE 297 (944)
Q Consensus 244 ~~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~~-------~~~~ 297 (944)
...++..+.+.+.. ... ...+.+.+...+.+.... ++.+|||||++..+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 66666666665432 000 123455566666555442 389999999966331 1122
Q ss_pred hhHhhhccCCCCcEEEEEccchhh-hhc---------c-cc-cceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 042336 298 PFHNCLMNCLHGSKILVTTRKETV-ARM---------M-ES-IDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIG 365 (944)
Q Consensus 298 ~l~~~l~~~~~gs~iivTtr~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 365 (944)
.+...... .++.++|+|++.... ... . +. ...+.+.+|+.+|+.+++............ ++.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHH
Confidence 23322222 257889999886543 211 1 11 247899999999999999875422211111 4567
Q ss_pred HHHHHhhCCChhhHHHHhhhhcCCCCHHHHHHHHhhhhhhhhhhccchhhHHHhhhhcC---hHHHHHHHhHhcccCCCc
Q 042336 366 RKIVGKCKGLPLAAKTIGSLLRFKRTTEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDL---PSRIKRCFLYCAVFPKNY 442 (944)
Q Consensus 366 ~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~~~~fp~~~ 442 (944)
.+|++.|+|+|+++..++..+....+...+.. ... +.+...+.-.+..+ ++..+..+..+|. +
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTL-------EVAKGLIMGELEELRRRSPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHH-------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHH---HHH-------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-
Confidence 88999999999999998876432222222211 100 00111111112222 6788999998887 2
Q ss_pred eecHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHHhccCCcccccccCeEEechHHHHHHH
Q 042336 443 NIKKDELIKLWAAQGCIGTKGNKEMEMIGEEYFDYLATRSFFQEFVEVDIIYKMHDIVHDFAQ 505 (944)
Q Consensus 443 ~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~~~~L~~~~li~~~~~~~~~~~mH~lv~~~~~ 505 (944)
.++...+.....+.. - +. .......+++.|++.+++.... +.+...|++++++.+
T Consensus 295 ~~~~~~l~~~~~~~~-~----~~-~~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 YNRWSLIRDYLAVKG-T----KI-PEPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp CCSHHHHHHHHHHTT-C----CC-CHHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-C----CC-CHHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 245555555443321 0 11 1345678999999999997642 334456889888753
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=7.2e-17 Score=173.98 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=150.1
Q ss_pred hcCCcccEEEeccCCCcccccccchhhhcccccceeccCccccc--ccCcccc-------CCCcccEEEecCccCCcccC
Q 042336 579 NQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIK--ELPDTCC-------ELFNLQTIEIEGCYNLNRLP 649 (944)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~--~lP~~i~-------~L~~L~~L~L~~~~~l~~lp 649 (944)
...++|+.|++++|. + .+|..+... |++|+|+++.+. .+|..+. ++.+|++|++++|.....+|
T Consensus 40 ~~~~~L~~l~l~~n~----l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDT----E-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEECTTHHHHCCT----T-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred ccCCCceeEeecccc----c-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 344556666777666 5 566655554 777777777664 4555554 56777777777776334566
Q ss_pred ccc--ccCCCCceeeccccccccccccccCC-----CCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCcc
Q 042336 650 QGV--GKLVNLRHLIFDVNFVEYMPKGIERL-----TCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLR 722 (944)
Q Consensus 650 ~~i--~~L~~L~~L~l~~~~~~~lp~~i~~l-----~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~ 722 (944)
..+ ..+++|++|+++.|.+..+|..++.+ ++|++|. ...|...+..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~----L~~N~l~~~~----------------------- 165 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS----IAQAHSLNFS----------------------- 165 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEE----EESCSCCCCC-----------------------
T ss_pred HHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEE----eeCCCCccch-----------------------
Confidence 665 67777777777666666665555444 5555554 2221111100
Q ss_pred CcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccC--CCCCCCceEEEeeCCCCCCCh--
Q 042336 723 NVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEAL--RPPPNLESLDVWKYRGETLPS-- 798 (944)
Q Consensus 723 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~lp~-- 798 (944)
...+..+++|+.|++++|.+.+. ..++..+ ..+++|+.|++++|....++.
T Consensus 166 ---------~~~~~~l~~L~~L~Ls~N~l~~~----------------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 166 ---------CEQVRVFPALSTLDLSDNPELGE----------------RGLISALCPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp ---------TTTCCCCSSCCEEECCSCTTCHH----------------HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred ---------HHHhccCCCCCEEECCCCCcCcc----------------hHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence 02234456677777777643321 1122223 567788888888887664432
Q ss_pred -h-hhcCCCccEEEeeccCCCCcC--CCCCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccc
Q 042336 799 -W-IMSLNKLKKLELSFCNKFEIM--PPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWEN 874 (944)
Q Consensus 799 -~-~~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~ 874 (944)
+ +..+++|+.|+|++|...... +.+..+++|++|+++++. ++ .
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~--------------------------------~ 267 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LK--------------------------------Q 267 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CS--------------------------------S
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cC--------------------------------h
Confidence 2 236789999999998776654 335667888888887654 10 0
Q ss_pred cCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcc
Q 042336 875 EKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 875 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
.|..+ +++|+.|++++|. ++.+|. +..+++|++|++++|+.
T Consensus 268 ip~~~--~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 268 VPKGL--PAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCSSC--CSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCTT
T ss_pred hhhhc--cCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCCC
Confidence 11111 1678888888874 666776 77888899999888875
No 66
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=1.1e-16 Score=141.03 Aligned_cols=81 Identities=23% Similarity=0.427 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHhhhhccchhhH
Q 042336 4 AFVSVVLEQLISVAVEEAKKEVRLVDGVDQEVEKLTSNFRAIQAVIVDAEQR--QIKEESVRLWLDQLKHTSYDMEDVLD 81 (944)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~ed~ld 81 (944)
|+++++++||++ ++.+|+.++.||++++++|+++|++|++||.||+.+ +..+++++.|+++||++|||+||+||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999 999999999999999999999999999999999988 56789999999999999999999999
Q ss_pred HHHHHHH
Q 042336 82 EWNTARL 88 (944)
Q Consensus 82 ~~~~~~~ 88 (944)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998874
No 67
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.65 E-value=2.1e-15 Score=169.88 Aligned_cols=297 Identities=13% Similarity=0.041 Sum_probs=181.4
Q ss_pred CCccccchhHHHHHHHHh-ccCCcccCCceEEEEE--EeeCCchHHHHHHHHhcCcccc---ccCc-eeEEEEeCCCCCH
Q 042336 172 VSEVRGRDEEKNTLKTKL-LCENSEEQNAVQVISM--VGMGGIGKTTLAQFVYNDNDVI---NNFE-KRIWVSVSDPFDE 244 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~~GiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~ 244 (944)
+..++||+.+++++.+.+ .............+.| +|++|+||||||+.+++..... ..|. .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4211100012345666 9999999999999999842211 0122 3578887777889
Q ss_pred HHHHHHHHHHhhCCCCC-CCCHHHHHHHHHHHhc--CCceEEEeCCCCccCc------cChhhhHhhhccC---C--CCc
Q 042336 245 YRVAKAIIEALEGSAPN-LGELNSLLQHICLSIT--GKKFLLVLDDVWTEDY------SKWEPFHNCLMNC---L--HGS 310 (944)
Q Consensus 245 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~------~~~~~l~~~l~~~---~--~gs 310 (944)
..++..++.+++...+. ..+...+...+.+.+. +++++|||||+|.-.. ..+..+...+... + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999999765332 2334555666666654 7899999999976321 2233233333322 2 345
Q ss_pred EEEEEccchhhhhccc--------c-cceEeCCCCChHHHHHHHHHHh---cCCCCCCCchhHHHHHHHHHHhhC-----
Q 042336 311 KILVTTRKETVARMME--------S-IDILIIKELSELECWSLFKRFA---FFGRSPFECKQLEEIGRKIVGKCK----- 373 (944)
Q Consensus 311 ~iivTtr~~~v~~~~~--------~-~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~~~~~~i~~~~~----- 373 (944)
.||+||+...+...+. . ...+.+.+++.++.+++|...+ +... ... ++....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-~~~----~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-VWE----PRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-SCC----HHHHHHHHHHHCGGGTS
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-CCC----hHHHHHHHHHHHHhccC
Confidence 5888887654322111 1 1239999999999999997653 2211 111 456778999999
Q ss_pred -CChhhHHHHhhhhc-----CC---CCHHHHHHHHhhhhhhhhhhccch-hhHHHhhhhcChHHHHHHHhHhcccC--CC
Q 042336 374 -GLPLAAKTIGSLLR-----FK---RTTEEWQNILDSEMWQLEEFEKDL-LAPLLLSYTDLPSRIKRCFLYCAVFP--KN 441 (944)
Q Consensus 374 -GlPlai~~~~~~l~-----~~---~~~~~w~~~~~~~~~~~~~~~~~i-~~~l~~sy~~L~~~~k~cf~~~~~fp--~~ 441 (944)
|.|..+..+..... .. -+.+.+....... . ...+.-++..||++.+.++..++.+. .+
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 99976665543221 01 1233333222210 1 23345567889999999999888753 23
Q ss_pred ceecHHHHHHHHH--H---cCCcccCCCchHHHHHHHHHHHHHhccCCcccc
Q 042336 442 YNIKKDELIKLWA--A---QGCIGTKGNKEMEMIGEEYFDYLATRSFFQEFV 488 (944)
Q Consensus 442 ~~i~~~~li~~w~--a---eg~i~~~~~~~~e~~~~~~~~~L~~~~li~~~~ 488 (944)
..+....+...+. + .|. . .........++++|++.++|....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNV-K----PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCC-C----CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCC-C----CCCHHHHHHHHHHHHhCCCEEeec
Confidence 3455555554442 2 121 1 111344667899999999997654
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=1.4e-15 Score=177.45 Aligned_cols=257 Identities=17% Similarity=0.085 Sum_probs=165.8
Q ss_pred eEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccc
Q 042336 533 LRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLR 612 (944)
Q Consensus 533 ~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr 612 (944)
.+.+.+..+.+..+|..+. ++|+.|.+.++.... ++. .+++|++|+|++|. +..+|. .+++|+
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~----l~~lp~---~l~~L~ 104 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQ----LTSLPV---LPPGLL 104 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-----CCC---CCTTCCEEEECSCC----CSCCCC---CCTTCC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-----CCC---cCCCCCEEEcCCCc----CCcCCC---CCCCCC
Confidence 5667777777776666554 899999999987432 222 57899999999998 777887 789999
Q ss_pred eeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEeccc
Q 042336 613 YFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSR 692 (944)
Q Consensus 613 ~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~ 692 (944)
+|+|++|.+..+|. .+.+|++|++++|. +..+|.. +++|++|+++.|.+..+|..+ ++|+.|. ...
T Consensus 105 ~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~---~~L~~L~----L~~ 170 (622)
T 3g06_A 105 ELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLW----AYN 170 (622)
T ss_dssp EEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCCC---TTCCEEE----CCS
T ss_pred EEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCcc---CCCCEEE----CCC
Confidence 99999999999987 67899999999997 8888875 489999999998888887643 4455553 222
Q ss_pred ccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHH
Q 042336 693 SDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEA 772 (944)
Q Consensus 693 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (944)
|.... .+ ..+++|+.|+++.|.+...
T Consensus 171 N~l~~-l~-----------------------------------~~~~~L~~L~Ls~N~l~~l------------------ 196 (622)
T 3g06_A 171 NQLTS-LP-----------------------------------MLPSGLQELSVSDNQLASL------------------ 196 (622)
T ss_dssp SCCSC-CC-----------------------------------CCCTTCCEEECCSSCCSCC------------------
T ss_pred CCCCC-Cc-----------------------------------ccCCCCcEEECCCCCCCCC------------------
Confidence 11111 00 1134566666666644321
Q ss_pred HhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCccccCccC
Q 042336 773 ICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEI 852 (944)
Q Consensus 773 ~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 852 (944)
+. .+++|+.|.+++|....+|.. +++|+.|+|++|.... +| ..+++|+.|+++++. ++.++
T Consensus 197 -~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~-L~~lp-------- 257 (622)
T 3g06_A 197 -PT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNR-LTSLP-------- 257 (622)
T ss_dssp -CC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSC-CSCCC--------
T ss_pred -CC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCC-CCcCC--------
Confidence 11 135677777777666666542 4667777777664433 44 445667777776653 22111
Q ss_pred ccCccccccccccccccccccccCCccccCcccceeeeccccccc
Q 042336 853 VAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLK 897 (944)
Q Consensus 853 ~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 897 (944)
..+++|+.|.+. ++... ..|..+..+++|+.|+|++|+...
T Consensus 258 ~~~~~L~~L~Ls---~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 258 MLPSGLLSLSVY---RNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCCTTCCEEECC---SSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred cccccCcEEeCC---CCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 133444444333 33222 334445677777777777776543
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=4.4e-17 Score=193.14 Aligned_cols=345 Identities=16% Similarity=0.082 Sum_probs=184.1
Q ss_pred cCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcc-cccccchhhhcccccceeccCcccccccCcccc
Q 042336 551 FNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKEN-SIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCC 629 (944)
Q Consensus 551 ~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~-~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~ 629 (944)
..+++|++|.+.++........++..++..++.|++|+++++.... ....++..+.++++|++|++++|.+..+|..+.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 4677888888777653322233356666777788888887776321 012355556677788888888877777777777
Q ss_pred CCCcccEEEecCccCC---cccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCcc-ccccc
Q 042336 630 ELFNLQTIEIEGCYNL---NRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKA-CNLGG 705 (944)
Q Consensus 630 ~L~~L~~L~L~~~~~l---~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~-~~l~~ 705 (944)
++++|++|+++++... ...+..+..+++|+.|++.......+|..+..+++|++|. ...+....... ..+..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~----Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD----LLYALLETEDHCTLIQK 316 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE----ETTCCCCHHHHHHHHTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe----cCCCcCCHHHHHHHHHh
Confidence 7888888887753322 2344556677777777775555556666666677777775 33322111111 11344
Q ss_pred CcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEe-ecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCc
Q 042336 706 LRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSF-VKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLE 784 (944)
Q Consensus 706 l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 784 (944)
+++|+. +.+. ..+ ...........+++|++|+++. ....... ..........+......+++|+
T Consensus 317 ~~~L~~----L~L~--~~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~-------~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 317 CPNLEV----LETR--NVI--GDRGLEVLAQYCKQLKRLRIERGADEQGME-------DEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CTTCCE----EEEE--GGG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTS-------STTCCCCHHHHHHHHHHCTTCS
T ss_pred CcCCCE----Eecc--Ccc--CHHHHHHHHHhCCCCCEEEeecCccccccc-------cccCccCHHHHHHHHhhCccCe
Confidence 455443 3332 111 1112222334567788888873 0000000 0000011112222223467788
Q ss_pred eEEEeeCCCCC-CChhhh-cCCCccEEEeeccC---CCCcCCC-------CCCCCCcceeeecccccceEeCccccCccC
Q 042336 785 SLDVWKYRGET-LPSWIM-SLNKLKKLELSFCN---KFEIMPP-------LGKLPSLELLEVFALQSVKRVGDEFLGIEI 852 (944)
Q Consensus 785 ~L~l~~~~~~~-lp~~~~-~l~~L~~L~L~~~~---~~~~l~~-------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 852 (944)
+|.++++.... .+..+. .+++|+.|++++|. .....|. +..+++|++|.++.|.. .+.........
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~--~l~~~~~~~~~ 459 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG--GLTDLGLSYIG 459 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG--GCCHHHHHHHH
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC--CccHHHHHHHH
Confidence 88886655322 223333 37888888887432 3332211 34577888888866542 01111111111
Q ss_pred ccCccccccccccccccccccccCCccccCcccceeeecccccccC--CCCCCCCCCCcCeEEEecCcc
Q 042336 853 VAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKS--LPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 853 ~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~ 919 (944)
..+++|+.|.+.++. ..... .+..+..+++|++|+|++|+ +.. ++.....+++|+.|++++|+.
T Consensus 460 ~~~~~L~~L~L~~n~-l~~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVG-ESDEG-LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HSCTTCCEEEECSCC-SSHHH-HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HhCccceEeeccCCC-CCHHH-HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcC
Confidence 235666666655432 11100 11123467888888888887 332 343344578888888888873
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=5.5e-16 Score=164.88 Aligned_cols=200 Identities=19% Similarity=0.158 Sum_probs=143.4
Q ss_pred CCcccEEEeccCCCcccccccc-hhhhcccccceeccCccccccc-CccccCCCcccEEEecCccCCccc-CcccccCCC
Q 042336 581 FTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKEL-PDTCCELFNLQTIEIEGCYNLNRL-PQGVGKLVN 657 (944)
Q Consensus 581 ~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~ 657 (944)
.+.|++|+|++|. +..+| ..+..+++|++|+|++|.+..+ |..+.++++|++|++++|..+..+ |..+..+++
T Consensus 31 ~~~l~~L~l~~n~----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNR----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCc----CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 4689999999988 66666 5688899999999999988866 677889999999999998656666 667888999
Q ss_pred Cceeecccccccccc-ccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcc
Q 042336 658 LRHLIFDVNFVEYMP-KGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELE 736 (944)
Q Consensus 658 L~~L~l~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 736 (944)
|++|+++.|.+..++ ..+..+++|++|. ...|.... + . ...+.
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~~--------------~------------~------~~~~~ 150 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLY----LQDNALQA--------------L------------P------DDTFR 150 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEE----CCSSCCCC--------------C------------C------TTTTT
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEE----CCCCcccc--------------c------------C------HhHhc
Confidence 999999888777764 4467777777775 22211111 0 0 02244
Q ss_pred cCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCC-ChhhhcCCCccEEEeeccC
Q 042336 737 KKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETL-PSWIMSLNKLKKLELSFCN 815 (944)
Q Consensus 737 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 815 (944)
.+++|+.|++++|.+... ....+..+++|+.|++++|....+ |.++..+++|+.|+|++|.
T Consensus 151 ~l~~L~~L~l~~n~l~~~------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSV------------------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp TCTTCCEEECCSSCCCEE------------------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCCccEEECCCCccccc------------------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 566788888887754432 122456677888888888876554 6777788888888888886
Q ss_pred CCCcCCC-CCCCCCcceeeecccc
Q 042336 816 KFEIMPP-LGKLPSLELLEVFALQ 838 (944)
Q Consensus 816 ~~~~l~~-l~~l~~L~~L~L~~~~ 838 (944)
.....+. +..+++|+.|++++++
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCcCCHHHcccCcccCEEeccCCC
Confidence 6553333 6778888888887664
No 71
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=5.2e-14 Score=155.12 Aligned_cols=293 Identities=13% Similarity=0.083 Sum_probs=176.2
Q ss_pred cCCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC-----CCHH
Q 042336 171 NVSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP-----FDEY 245 (944)
Q Consensus 171 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 245 (944)
.+..|+||+++++.+.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 731 48999999999999999999874 222 2578887642 3445
Q ss_pred HHHHHHHHHhhC-------------CC-----C-----------CCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc---
Q 042336 246 RVAKAIIEALEG-------------SA-----P-----------NLGELNSLLQHICLSITGKKFLLVLDDVWTEDY--- 293 (944)
Q Consensus 246 ~~~~~i~~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--- 293 (944)
.++..+.+.+.. .. + .......+...+.+... ++++|||||+++.+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555444320 00 0 12234555555544322 499999999965321
Q ss_pred cChhhhHhhhccCCCCcEEEEEccchhhhh-c---------c-cc-cceEeCCCCChHHHHHHHHHHhcCCCCCCCchhH
Q 042336 294 SKWEPFHNCLMNCLHGSKILVTTRKETVAR-M---------M-ES-IDILIIKELSELECWSLFKRFAFFGRSPFECKQL 361 (944)
Q Consensus 294 ~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 361 (944)
..|..+...+.....+.++|+|++...... . . +. ...+.+.+|+.+++.+++............ .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--D- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--C-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--c-
Confidence 233333333333234778999998764311 1 1 11 257899999999999999875421111111 1
Q ss_pred HHHHHHHHHhhCCChhhHHHHhhhhcCCCCHHHHHHHHhhhhhhhhhhccchhhHHH-hhh--hcChHHHHHHHhHhccc
Q 042336 362 EEIGRKIVGKCKGLPLAAKTIGSLLRFKRTTEEWQNILDSEMWQLEEFEKDLLAPLL-LSY--TDLPSRIKRCFLYCAVF 438 (944)
Q Consensus 362 ~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~cf~~~~~f 438 (944)
...|++.|+|+|+++..++..+....+...|..-.-. .....+..-+. +.+ ..||+..+..+..+|.
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE------YAKKLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH------HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH------HHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 1789999999999999998776433333333221100 00001111111 111 1688999999999998
Q ss_pred CCCceecHHHHHHHHH-HcCCcccCCCchHHHHHHHHHHHHHhccCCcccccccCeEEechHHHHHH
Q 042336 439 PKNYNIKKDELIKLWA-AQGCIGTKGNKEMEMIGEEYFDYLATRSFFQEFVEVDIIYKMHDIVHDFA 504 (944)
Q Consensus 439 p~~~~i~~~~li~~w~-aeg~i~~~~~~~~e~~~~~~~~~L~~~~li~~~~~~~~~~~mH~lv~~~~ 504 (944)
+. +...+..... ..|. .........+++.|++.++|.... +.+...|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 22 4444443221 1121 011245678899999999997543 34444688988763
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=1.3e-15 Score=174.46 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=61.9
Q ss_pred cCCcccEEEeccCCCccccccc-chhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCC
Q 042336 580 QFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNL 658 (944)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 658 (944)
.+++|++|+|++|. +..+ |..++.+++|++|+|++|.+..+++ ++.+++|++|+|++|. +..+|. .++|
T Consensus 32 ~~~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSI 101 (487)
T ss_dssp TGGGCCEEECCSSC----CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTC
T ss_pred cCCCccEEEeeCCc----CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCc
Confidence 34478888888887 5554 4678888888888888888876554 7888888888888886 665553 3788
Q ss_pred ceeeccccccccccc
Q 042336 659 RHLIFDVNFVEYMPK 673 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~ 673 (944)
++|+++.|.+..+|.
T Consensus 102 ~~L~L~~N~l~~~~~ 116 (487)
T 3oja_A 102 ETLHAANNNISRVSC 116 (487)
T ss_dssp CEEECCSSCCCCEEE
T ss_pred CEEECcCCcCCCCCc
Confidence 888887776665543
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=5.4e-17 Score=175.40 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=73.1
Q ss_pred cccEEEeccCCCcccccccchh-hhcccccceeccCcccccccC-ccccCCCcccEEEecCccCCcccCcccccCCCCce
Q 042336 583 CLRALKITRNSKENSIYEIPKE-IQKLIHLRYFKLHWLEIKELP-DTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRH 660 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 660 (944)
.++.++++.+. +...+.. +..+++|++|+|++|.+..++ ..++++++|++|++++|. +..++. +..+++|++
T Consensus 11 ~l~i~~ls~~~----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~ 84 (317)
T 3o53_A 11 RYKIEKVTDSS----LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRT 84 (317)
T ss_dssp EEEEESCCTTT----HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCE
T ss_pred ceeEeeccccc----hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCE
Confidence 35566676666 5544433 456779999999999998776 679999999999999998 665555 899999999
Q ss_pred eeccccccccccccccCCCCCCcCC
Q 042336 661 LIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 661 L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
|+++.|.+..+|. .++|++|.
T Consensus 85 L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 85 LDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp EECCSSEEEEEEE----CTTCCEEE
T ss_pred EECcCCccccccC----CCCcCEEE
Confidence 9999998887764 36777775
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=1.5e-15 Score=161.60 Aligned_cols=218 Identities=20% Similarity=0.198 Sum_probs=165.5
Q ss_pred EEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccce
Q 042336 535 HSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRY 613 (944)
Q Consensus 535 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~ 613 (944)
.+......+..+|..+ .++|+.|.+.++.... ..+..|..+++|++|+|++|. +..+ |..++.+++|++
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISH----VPAASFRACRNLTILWLHSNV----LARIDAAAFTGLALLEQ 84 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCE
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCc----cCHHHcccCCCCCEEECCCCc----cceeCHhhcCCccCCCE
Confidence 3444444455455433 5799999999987532 123347899999999999998 6665 778999999999
Q ss_pred eccCccc-cccc-CccccCCCcccEEEecCccCCccc-CcccccCCCCceeecccccccccccc-ccCCCCCCcCCceEe
Q 042336 614 FKLHWLE-IKEL-PDTCCELFNLQTIEIEGCYNLNRL-PQGVGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTLSEFVV 689 (944)
Q Consensus 614 L~Ls~~~-i~~l-P~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~ 689 (944)
|++++|. +..+ |..+.++++|++|++++|. +..+ |..+.++++|++|+++.|.+..+|.. ++.+++|+.|+
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---- 159 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF---- 159 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE----
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE----
Confidence 9999997 8877 6779999999999999998 5555 66789999999999999988888765 77888888876
Q ss_pred cccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCccc
Q 042336 690 VSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVS 769 (944)
Q Consensus 690 ~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 769 (944)
...|... .+ . ...+..+++|+.|+++.|.+.+.
T Consensus 160 l~~n~l~------------------~~--------~------~~~~~~l~~L~~L~l~~n~l~~~--------------- 192 (285)
T 1ozn_A 160 LHGNRIS------------------SV--------P------ERAFRGLHSLDRLLLHQNRVAHV--------------- 192 (285)
T ss_dssp CCSSCCC------------------EE--------C------TTTTTTCTTCCEEECCSSCCCEE---------------
T ss_pred CCCCccc------------------cc--------C------HHHhcCccccCEEECCCCccccc---------------
Confidence 2221110 00 0 02245567899999998865532
Q ss_pred HHHHhccCCCCCCCceEEEeeCCCCCCCh-hhhcCCCccEEEeeccCCC
Q 042336 770 HEAICEALRPPPNLESLDVWKYRGETLPS-WIMSLNKLKKLELSFCNKF 817 (944)
Q Consensus 770 ~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~ 817 (944)
.+..+..+++|+.|++++|....+|. ++..+++|+.|+|++|+..
T Consensus 193 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 193 ---HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ---CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 24567778999999999999877774 5778999999999998754
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=2.4e-16 Score=186.75 Aligned_cols=354 Identities=12% Similarity=0.009 Sum_probs=193.5
Q ss_pred ceEEEEEEeCCCCc-chhhccC-CCC-eeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccc-ccccchhhhc
Q 042336 532 ELRHSMLVFGNEAS-FPVFMFN-AKK-LRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENS-IYEIPKEIQK 607 (944)
Q Consensus 532 ~~r~lsl~~~~~~~-~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~-~~~lp~~i~~ 607 (944)
.++++.+..+.+.. .+..+.. +++ |++|.+.++.... ...+..+..++++|++|+|++|..... ...++..+..
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 45566666554432 1222222 333 7777777765211 233555556777888888877762110 0013344566
Q ss_pred ccccceeccCccccc-----ccCccccCCCcccEEEecCccCCcccCcccccCCCCceeecccc-cc---ccccccccCC
Q 042336 608 LIHLRYFKLHWLEIK-----ELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVN-FV---EYMPKGIERL 678 (944)
Q Consensus 608 l~~Lr~L~Ls~~~i~-----~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~-~~---~~lp~~i~~l 678 (944)
+++|++|++++|.+. .++..+.++++|++|++++|. +..+|..+..+++|++|+++.. .. ...+..+..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 777888888777764 455556677788888888776 6667777777788888877432 11 1223345555
Q ss_pred CCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhh
Q 042336 679 TCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEE 758 (944)
Q Consensus 679 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 758 (944)
++|+.|.. .. ......+..+..+++|+ .+.+.... +. .......+..+++|+.|+++.+ +.
T Consensus 270 ~~L~~L~l----~~-~~~~~l~~~~~~~~~L~----~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~~~-~~------ 330 (592)
T 3ogk_B 270 RKLCRLGL----SY-MGPNEMPILFPFAAQIR----KLDLLYAL-LE--TEDHCTLIQKCPNLEVLETRNV-IG------ 330 (592)
T ss_dssp TTCCEEEE----TT-CCTTTGGGGGGGGGGCC----EEEETTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-GH------
T ss_pred ccccccCc----cc-cchhHHHHHHhhcCCCc----EEecCCCc-CC--HHHHHHHHHhCcCCCEEeccCc-cC------
Confidence 66665541 11 11111233344444444 44444432 11 1122233566778888888732 11
Q ss_pred hhhhcCCCcccHHHHhccCCCCCCCceEEEee----------CCCCC---CChhhhcCCCccEEEeeccCCCCc-CCCCC
Q 042336 759 EEVTEGKNEVSHEAICEALRPPPNLESLDVWK----------YRGET---LPSWIMSLNKLKKLELSFCNKFEI-MPPLG 824 (944)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~---lp~~~~~l~~L~~L~L~~~~~~~~-l~~l~ 824 (944)
...+......+++|++|++++ +.... ++.....+++|++|++..+...+. +..++
T Consensus 331 -----------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 331 -----------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp -----------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred -----------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 112222234567899999983 33211 223344689999999965544332 22233
Q ss_pred C-CCCcceeeecccc---cceEeCcc-ccCccCccCcccccccccccccc-ccccccCCccccCcccceeeeccccccc-
Q 042336 825 K-LPSLELLEVFALQ---SVKRVGDE-FLGIEIVAFPKLKHLIFVDLDEW-EEWENEKNDITIMPQLNSLEIRDCHKLK- 897 (944)
Q Consensus 825 ~-l~~L~~L~L~~~~---~l~~~~~~-~~~~~~~~f~~L~~L~l~~l~~~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~- 897 (944)
. +++|++|++.+|. .+...+.. ........+++|+.|.+..+.+. ..... ......+++|+.|+|++|....
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH-HHHHHSCTTCCEEEECSCCSSHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH-HHHHHhCccceEeeccCCCCCHH
Confidence 3 7899999997543 22211000 00001124677777777554431 11110 0111248999999999987332
Q ss_pred CCCCCCCCCCCcCeEEEecCcc
Q 042336 898 SLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 898 ~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
.++..+.++++|++|++++|+.
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCC
T ss_pred HHHHHHhcCcccCeeeccCCCC
Confidence 2444556789999999999983
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=3.4e-15 Score=160.26 Aligned_cols=190 Identities=17% Similarity=0.211 Sum_probs=118.8
Q ss_pred cCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCc
Q 042336 580 QFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLR 659 (944)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 659 (944)
.+++|++|++++|. +..+| .+..+++|++|+|++|.+..+|. +.++++|++|++++|. +..+| .+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~----i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTG----VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSC----CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCC
T ss_pred HcCCcCEEEeeCCC----ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCC
Confidence 45566666666666 55554 46666667777777666666665 6666677777776665 55554 466666777
Q ss_pred eeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCC
Q 042336 660 HLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKK 739 (944)
Q Consensus 660 ~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 739 (944)
+|+++.|.+..+|. +..+++|+.|. ...|...+ . ..+..++
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~----l~~n~l~~-----------------------------~-----~~l~~l~ 151 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLY----LDLNQITN-----------------------------I-----SPLAGLT 151 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEE----CCSSCCCC-----------------------------C-----GGGGGCT
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEE----CCCCccCc-----------------------------C-----ccccCCC
Confidence 77766666665553 55555555554 11110000 0 0133455
Q ss_pred CcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCc
Q 042336 740 NLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEI 819 (944)
Q Consensus 740 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~ 819 (944)
+|+.|+++.|.+.+. . .+..+++|+.|++++|....++. +..+++|+.|+|++|....
T Consensus 152 ~L~~L~l~~n~l~~~-------------------~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~- 209 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDL-------------------T-PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISD- 209 (308)
T ss_dssp TCCEEECCSSCCCCC-------------------G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCB-
T ss_pred CccEEEccCCcCCCC-------------------h-hhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCc-
Confidence 677777776654432 1 15566778888888887766665 6678888888888886554
Q ss_pred CCCCCCCCCcceeeecccc
Q 042336 820 MPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 820 l~~l~~l~~L~~L~L~~~~ 838 (944)
++++..+++|+.|+++++.
T Consensus 210 ~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 210 VSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CGGGTTCTTCCEEEEEEEE
T ss_pred cccccCCCCCCEEEccCCe
Confidence 3357788888888888765
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.8e-15 Score=173.14 Aligned_cols=215 Identities=17% Similarity=0.161 Sum_probs=164.7
Q ss_pred CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCC
Q 042336 552 NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCEL 631 (944)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L 631 (944)
.+++|++|++.++.... ..+..|..+++|++|+|++|. +...++ ++.+++|++|+|++|.+..+|..
T Consensus 32 ~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~----l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~---- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNV----LYETLD-LESLSTLRTLDLNNNYVQELLVG---- 98 (487)
T ss_dssp TGGGCCEEECCSSCCCC----CCGGGGTTCTTCCEEECTTSC----CEEEEE-CTTCTTCCEEECCSSEEEEEEEC----
T ss_pred cCCCccEEEeeCCcCCC----CCHHHHhCCCCCCEEEeeCCC----CCCCcc-cccCCCCCEEEecCCcCCCCCCC----
Confidence 34599999999987532 223458899999999999998 655554 89999999999999999887743
Q ss_pred CcccEEEecCccCCcccCcccccCCCCceeecccccccccc-ccccCCCCCCcCCceEecccccCCCCcccccccCcCcc
Q 042336 632 FNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMP-KGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLN 710 (944)
Q Consensus 632 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 710 (944)
++|++|++++|. +..+|.. .+++|++|++++|.+..++ ..++.+++|+.|+ ...|...+
T Consensus 99 ~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~----Ls~N~l~~------------- 158 (487)
T 3oja_A 99 PSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD----LKLNEIDT------------- 158 (487)
T ss_dssp TTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE----CTTSCCCE-------------
T ss_pred CCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE----CCCCCCCC-------------
Confidence 899999999998 6666553 5789999999998887764 4678888888876 33321111
Q ss_pred cCCceEEEcCccCcCChhhhhhhhc-ccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEe
Q 042336 711 HLRGSLRIRGLRNVTDVHEAKIVEL-EKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVW 789 (944)
Q Consensus 711 ~L~~~l~i~~l~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 789 (944)
. ....+ ..+++|+.|+|++|.+.+. .....+++|+.|+|+
T Consensus 159 -----~--------------~~~~l~~~l~~L~~L~Ls~N~l~~~--------------------~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 159 -----V--------------NFAELAASSDTLEHLNLQYNFIYDV--------------------KGQVVFAKLKTLDLS 199 (487)
T ss_dssp -----E--------------EGGGGGGGTTTCCEEECTTSCCCEE--------------------ECCCCCTTCCEEECC
T ss_pred -----c--------------ChHHHhhhCCcccEEecCCCccccc--------------------cccccCCCCCEEECC
Confidence 0 01122 2567899999998865432 233457899999999
Q ss_pred eCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccc
Q 042336 790 KYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 790 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 838 (944)
+|....+|+.+..+++|+.|+|++|......+.++.+++|+.|+++++.
T Consensus 200 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 9998888888889999999999999877644458889999999998765
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=6.8e-17 Score=185.13 Aligned_cols=336 Identities=14% Similarity=0.142 Sum_probs=198.7
Q ss_pred CCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccc-ccccchhhhcccccceeccCcccccc-cCccc-c
Q 042336 553 AKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENS-IYEIPKEIQKLIHLRYFKLHWLEIKE-LPDTC-C 629 (944)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~-~~~lp~~i~~l~~Lr~L~Ls~~~i~~-lP~~i-~ 629 (944)
.++|++|++.++... ...+..++..+++|++|+|++|..... ...++..+..+++|++|+|++|.+.. .+..+ .
T Consensus 2 ~~~l~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccC---chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 367899999987643 233556688999999999999983211 11567888899999999999999863 23233 3
Q ss_pred CCC----cccEEEecCccCCc-----ccCcccccCCCCceeeccccccccc-----ccc-ccCCCCCCcCCceEeccccc
Q 042336 630 ELF----NLQTIEIEGCYNLN-----RLPQGVGKLVNLRHLIFDVNFVEYM-----PKG-IERLTCLRTLSEFVVVSRSD 694 (944)
Q Consensus 630 ~L~----~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~l-----p~~-i~~l~~L~~L~~~~~~~~~~ 694 (944)
.+. +|++|++++|. +. .+|..+.++++|++|+++.|.+... ... ....++|++|. ...+.
T Consensus 79 ~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~----L~~n~ 153 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ----LEYCS 153 (461)
T ss_dssp TTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE----CTTSC
T ss_pred HHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE----CCCCC
Confidence 354 79999999998 54 5688899999999999988876532 112 22345677776 33332
Q ss_pred CCCCc----ccccccCcCcccCCceEEEcCccCcCChh-hhhhhhcc-cCCCcCcEEEEeecCCCCchhhhhhhcCCCcc
Q 042336 695 KYGNK----ACNLGGLRQLNHLRGSLRIRGLRNVTDVH-EAKIVELE-KKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEV 768 (944)
Q Consensus 695 ~~~~~----~~~l~~l~~L~~L~~~l~i~~l~~~~~~~-~~~~~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 768 (944)
..... +..+..+++|+ .+.+.+.. +.... ......+. ..++|+.|++++|.+...
T Consensus 154 l~~~~~~~l~~~l~~~~~L~----~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------------- 214 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFK----ELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-------------- 214 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCC----EEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT--------------
T ss_pred CCHHHHHHHHHHHhhCCCCC----EEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH--------------
Confidence 22211 22233344444 33333321 11110 11111111 345788888887754432
Q ss_pred cHHHHhccCCCCCCCceEEEeeCCCCCC------ChhhhcCCCccEEEeeccCCCCc----CCC-CCCCCCcceeeeccc
Q 042336 769 SHEAICEALRPPPNLESLDVWKYRGETL------PSWIMSLNKLKKLELSFCNKFEI----MPP-LGKLPSLELLEVFAL 837 (944)
Q Consensus 769 ~~~~~~~~l~~~~~L~~L~l~~~~~~~l------p~~~~~l~~L~~L~L~~~~~~~~----l~~-l~~l~~L~~L~L~~~ 837 (944)
....+...+..+++|+.|++++|..... +.+...+++|++|++++|..... ++. +..+++|++|+++++
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 1123445556678888888888764321 12222578889999988865432 222 556788888888876
Q ss_pred ccceEeCc-cccCccCccCccccccccccccccccccc----cCCccccCcccceeeecccccccCCC----CCCC-CCC
Q 042336 838 QSVKRVGD-EFLGIEIVAFPKLKHLIFVDLDEWEEWEN----EKNDITIMPQLNSLEIRDCHKLKSLP----HQIL-GNT 907 (944)
Q Consensus 838 ~~l~~~~~-~~~~~~~~~f~~L~~L~l~~l~~~~~~~~----~~~~~~~l~~L~~L~l~~c~~l~~lp----~~~~-~l~ 907 (944)
. +...+. .+........++|+.|.+.++. .... .+..+..+++|+.|++++|..-...+ ..+. ..+
T Consensus 295 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 370 (461)
T 1z7x_W 295 E-LGDEGARLLCETLLEPGCQLESLWVKSCS---FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370 (461)
T ss_dssp C-CHHHHHHHHHHHHTSTTCCCCEEECTTSC---CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred C-CchHHHHHHHHHhccCCccceeeEcCCCC---CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC
Confidence 4 211110 0000000112466666555432 2111 12223457899999999985322211 1222 267
Q ss_pred CcCeEEEecCcc
Q 042336 908 TLQMLKIYNCRI 919 (944)
Q Consensus 908 ~L~~L~l~~c~~ 919 (944)
+|++|++++|..
T Consensus 371 ~L~~L~L~~n~i 382 (461)
T 1z7x_W 371 VLRVLWLADCDV 382 (461)
T ss_dssp CCCEEECTTSCC
T ss_pred ceEEEECCCCCC
Confidence 999999999965
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=6.6e-15 Score=158.60 Aligned_cols=202 Identities=17% Similarity=0.118 Sum_probs=107.9
Q ss_pred cCCcccEEEeccCCCcccccccchhh--hcccccceeccCcccccccCccccCC-----CcccEEEecCccCCcccC-cc
Q 042336 580 QFTCLRALKITRNSKENSIYEIPKEI--QKLIHLRYFKLHWLEIKELPDTCCEL-----FNLQTIEIEGCYNLNRLP-QG 651 (944)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~lp~~i--~~l~~Lr~L~Ls~~~i~~lP~~i~~L-----~~L~~L~L~~~~~l~~lp-~~ 651 (944)
++++|++|+|++|.. ...+|..+ +.+++|++|+|++|.+..+|..++.+ ++|++|++++|. +..+| ..
T Consensus 93 ~l~~L~~L~L~~n~l---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEV---TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBC---BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTT
T ss_pred CcCCccEEEccCCcc---cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHH
Confidence 455555555555552 11344443 55555555555555555445555544 555555555555 33333 44
Q ss_pred cccCCCCceeecccccccc---ccccc--cCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCC
Q 042336 652 VGKLVNLRHLIFDVNFVEY---MPKGI--ERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTD 726 (944)
Q Consensus 652 i~~L~~L~~L~l~~~~~~~---lp~~i--~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~ 726 (944)
++.+++|++|+++.|.+.. +|..+ +.+++|++|+ ...| .+..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~----L~~N-----------------------------~l~~ 215 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA----LRNA-----------------------------GMET 215 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEE----CTTS-----------------------------CCCC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEE----CCCC-----------------------------cCcc
Confidence 5555555555555444221 12222 4444444443 1111 0111
Q ss_pred hhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCc
Q 042336 727 VHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKL 806 (944)
Q Consensus 727 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L 806 (944)
........+..+++|+.|++++|.+.+.. ....+..+++|+.|++++|....+|.++. ++|
T Consensus 216 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L 276 (312)
T 1wwl_A 216 PSGVCSALAAARVQLQGLDLSHNSLRDAA-----------------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKL 276 (312)
T ss_dssp HHHHHHHHHHTTCCCSEEECTTSCCCSSC-----------------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEE
T ss_pred hHHHHHHHHhcCCCCCEEECCCCcCCccc-----------------chhhhhhcCCCCEEECCCCccChhhhhcc--CCc
Confidence 11111122345677888888877655421 01233445778888888887777777665 778
Q ss_pred cEEEeeccCCCCcCCCCCCCCCcceeeecccc
Q 042336 807 KKLELSFCNKFEIMPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 807 ~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 838 (944)
+.|+|++|...+. |.+..+++|++|+++++.
T Consensus 277 ~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred eEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 8888888765544 557777888888777653
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=5.3e-14 Score=148.08 Aligned_cols=195 Identities=20% Similarity=0.278 Sum_probs=112.7
Q ss_pred cccEEEeccCCCcccccccchhhhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCcccCccc-ccCCCCce
Q 042336 583 CLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQGV-GKLVNLRH 660 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~ 660 (944)
.++.++++++. +..+|..+. .+|++|+|++|.+..+|. .+.++++|++|++++|. +..+|..+ ..+++|++
T Consensus 17 ~~~~l~~~~~~----l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKK----LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSC----CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCC----CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCE
Confidence 35566666665 555555443 456666666666665554 46666666666666665 55555443 55666666
Q ss_pred eecccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCC
Q 042336 661 LIFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKK 739 (944)
Q Consensus 661 L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 739 (944)
|+++.|.+..+|.. +..+++|+.|. ...+.... + . ...+..++
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~~--------------~------------~------~~~~~~l~ 133 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELR----LDRNQLKS--------------L------------P------PRVFDSLT 133 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEE----CCSSCCCC--------------C------------C------TTTTTTCT
T ss_pred EECCCCcCCcCCHhHcccccCCCEEE----CCCCccCe--------------e------------C------HHHhCcCc
Confidence 66666655555543 34555555554 11111000 0 0 01233455
Q ss_pred CcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChh-hhcCCCccEEEeeccCCCC
Q 042336 740 NLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSW-IMSLNKLKKLELSFCNKFE 818 (944)
Q Consensus 740 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~ 818 (944)
+|+.|++++|.+... ....+..+++|+.|++++|....+|.. +..+++|+.|+|++|....
T Consensus 134 ~L~~L~Ls~n~l~~~------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 134 KLTYLSLGYNELQSL------------------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp TCCEEECCSSCCCCC------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCEEECCCCcCCcc------------------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 666777776654432 122355667788888888776666653 5677888888888886554
Q ss_pred cCCC-CCCCCCcceeeecccc
Q 042336 819 IMPP-LGKLPSLELLEVFALQ 838 (944)
Q Consensus 819 ~l~~-l~~l~~L~~L~L~~~~ 838 (944)
..+. +..+++|+.|.+.+++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHHHhccccCCCEEEecCCC
Confidence 3333 6778888888887654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=3e-14 Score=150.04 Aligned_cols=87 Identities=28% Similarity=0.455 Sum_probs=49.5
Q ss_pred hcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcc-cccCCC
Q 042336 579 NQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQG-VGKLVN 657 (944)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~ 657 (944)
..++.|+.|+++++. +..++ .++.+++|++|++++|.+..+| .++++++|++|++++|. +..+|.. +..+++
T Consensus 38 ~~l~~L~~L~l~~~~----i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 38 NELNSIDQIIANNSD----IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHTTCCEEECTTSC----CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTT
T ss_pred ccccceeeeeeCCCC----ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcC
Confidence 344556666666665 44433 3566666666666666665543 55666666666666665 4444433 456666
Q ss_pred Cceeecccccccccc
Q 042336 658 LRHLIFDVNFVEYMP 672 (944)
Q Consensus 658 L~~L~l~~~~~~~lp 672 (944)
|++|+++.|.+..+|
T Consensus 111 L~~L~L~~n~l~~~~ 125 (272)
T 3rfs_A 111 LKELVLVENQLQSLP 125 (272)
T ss_dssp CCEEECTTSCCCCCC
T ss_pred CCEEECCCCcCCccC
Confidence 666666555544443
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=4.5e-16 Score=184.54 Aligned_cols=366 Identities=14% Similarity=0.085 Sum_probs=187.6
Q ss_pred ceEEEEEEeCCCCc-chhhcc-CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccc-ccccchhhhcc
Q 042336 532 ELRHSMLVFGNEAS-FPVFMF-NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENS-IYEIPKEIQKL 608 (944)
Q Consensus 532 ~~r~lsl~~~~~~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~-~~~lp~~i~~l 608 (944)
.++++.+..+.+.. .+..+. .+++|++|.+.++.... ...++.++.++++|++|+|++|..... ...++.....+
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 56677777665543 222332 58899999998874211 233666677899999999998873111 11133333467
Q ss_pred cccceeccCccc--cc--ccCccccCCCcccEEEecCccCCcccCcccccCCCCceeecccc-------ccccccccccC
Q 042336 609 IHLRYFKLHWLE--IK--ELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVN-------FVEYMPKGIER 677 (944)
Q Consensus 609 ~~Lr~L~Ls~~~--i~--~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~-------~~~~lp~~i~~ 677 (944)
++|++|++++|. +. .++..+.++++|++|++++|..+..+|..+.++++|++|+++.+ .+..++..+.+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 789999999886 22 33434456789999999998667778888888899999986332 23344555666
Q ss_pred CCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchh
Q 042336 678 LTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDE 757 (944)
Q Consensus 678 l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 757 (944)
+++|+.|..+..... ...+..+..+.+|+ .+.+.... +. .......+..+++|++|.++.| +.+....
T Consensus 264 ~~~L~~Ls~~~~~~~----~~l~~~~~~~~~L~----~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~ 331 (594)
T 2p1m_B 264 CKELRCLSGFWDAVP----AYLPAVYSVCSRLT----TLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDY-IEDAGLE 331 (594)
T ss_dssp CTTCCEEECCBTCCG----GGGGGGHHHHTTCC----EEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred CCCcccccCCcccch----hhHHHHHHhhCCCC----EEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence 666666521110000 00111111223333 33332222 11 1111122334455555555544 1100000
Q ss_pred -hhhhh----------------cCCCcccHHHHhccCCCCCCCceEEEeeCCCCC-CChhhh-cCCCccEEEee-----c
Q 042336 758 -EEEVT----------------EGKNEVSHEAICEALRPPPNLESLDVWKYRGET-LPSWIM-SLNKLKKLELS-----F 813 (944)
Q Consensus 758 -~~~~~----------------~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~~-~l~~L~~L~L~-----~ 813 (944)
..... ..........+......+++|+.|.+.++.... .+..+. .+++|+.|+|+ +
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 00000 000011111111111225677777665554321 112222 47778888887 3
Q ss_pred cCCCCcCCC-------CCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCc-cccCccc
Q 042336 814 CNKFEIMPP-------LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKND-ITIMPQL 885 (944)
Q Consensus 814 ~~~~~~l~~-------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~-~~~l~~L 885 (944)
|......|. +..+++|+.|++++ .+. ..........+++|+.|.+.++. ........ ...+|+|
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~---~~~~~~l~~~~~~L~~L~L~~~~---i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLT---DKVFEYIGTYAKKMEMLSVAFAG---DSDLGMHHVLSGCDSL 483 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCC---HHHHHHHHHHCTTCCEEEEESCC---SSHHHHHHHHHHCTTC
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC--ccc---HHHHHHHHHhchhccEeeccCCC---CcHHHHHHHHhcCCCc
Confidence 333332221 34567777777754 111 11000001124556666554432 21111111 1358999
Q ss_pred ceeeecccccccC-CCCCCCCCCCcCeEEEecCcc
Q 042336 886 NSLEIRDCHKLKS-LPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 886 ~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~ 919 (944)
+.|+|++|+.... ++..+..+++|+.|++++|+.
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999999986222 222345578999999999987
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=2.4e-14 Score=151.33 Aligned_cols=123 Identities=25% Similarity=0.283 Sum_probs=82.6
Q ss_pred CCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcccccccC-ccccCC
Q 042336 554 KKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELP-DTCCEL 631 (944)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP-~~i~~L 631 (944)
++|++|++.++..... .+..|.++++|++|+|++|. +..++ ..+.++++|++|+|++|.+..+| ..+.++
T Consensus 28 ~~l~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCCCCEE----CTTTTTTCTTCSEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECCCCccccc----CHhHhccccCCcEEECCCCc----CCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 4677777777654221 12236677778888888776 55554 35777778888888887777555 457777
Q ss_pred CcccEEEecCccCCcccCc-ccccCCCCceeecccccccc--ccccccCCCCCCcCC
Q 042336 632 FNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDVNFVEY--MPKGIERLTCLRTLS 685 (944)
Q Consensus 632 ~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~ 685 (944)
.+|++|++++|. +..++. .+..+++|++|+++.|.+.. +|..++.+++|++|+
T Consensus 100 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 100 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 888888887776 554444 57777788888877776655 456666666666664
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=2.5e-14 Score=151.89 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=78.2
Q ss_pred ccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccceeccCcccccccCccc
Q 042336 550 MFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKELPDTC 628 (944)
Q Consensus 550 ~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lP~~i 628 (944)
+.++++++++.+.++.... ++. .-.+.|++|+|++|. +..+ |..+..+++|++|+|++|.+..+|..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-----ip~--~~~~~l~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-----LPP--DLPKDTTILHLSENL----LYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-----CCS--CCCTTCCEEECTTSC----CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred ccccCCccEEECCCCCCCc-----CCC--CCCCCCCEEEcCCCc----CCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 3456677777776655322 111 112567777777776 4443 35667777777777777777766654
Q ss_pred cCCCcccEEEecCccCCcccCcccccCCCCceeecccccccccccc-ccCCCCCCcCC
Q 042336 629 CELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 629 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
+.+++|++|++++|. +..+|..+..+++|++|+++.|.+..+|.+ +..+++|+.|.
T Consensus 74 ~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 677777777777776 667777777777777777777766666533 55555555554
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=1.9e-14 Score=154.45 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=145.9
Q ss_pred cCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccC
Q 042336 551 FNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCE 630 (944)
Q Consensus 551 ~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~ 630 (944)
.++++|++|.+.++.... ++. +..+++|++|+|++|. +..++. +..+++|++|+|++|.+..+| .+.+
T Consensus 38 ~~l~~L~~L~l~~~~i~~-----l~~-~~~l~~L~~L~L~~n~----i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-----IEG-VQYLNNLIGLELKDNQ----ITDLAP-LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-----CTT-GGGCTTCCEEECCSSC----CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred HHcCCcCEEEeeCCCccC-----chh-hhccCCCCEEEccCCc----CCCChh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence 356788888888876432 222 6788999999999998 777777 889999999999999988876 6889
Q ss_pred CCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcc
Q 042336 631 LFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLN 710 (944)
Q Consensus 631 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 710 (944)
+++|++|++++|. +..+|. +..+++|++|+++.|.+..+|. ++.+++|+.|+ ...|....
T Consensus 106 l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~----l~~n~l~~------------- 165 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLS----IGNAQVSD------------- 165 (308)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE----CCSSCCCC-------------
T ss_pred CCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEE----ccCCcCCC-------------
Confidence 9999999999987 777765 8899999999998888887765 77777777775 22211100
Q ss_pred cCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEee
Q 042336 711 HLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWK 790 (944)
Q Consensus 711 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 790 (944)
+ ..+..+++|+.|+++.|.+.+. ..+..+++|+.|++++
T Consensus 166 -~--------------------~~l~~l~~L~~L~l~~n~l~~~--------------------~~l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 166 -L--------------------TPLANLSKLTTLKADDNKISDI--------------------SPLASLPNLIEVHLKN 204 (308)
T ss_dssp -C--------------------GGGTTCTTCCEEECCSSCCCCC--------------------GGGGGCTTCCEEECTT
T ss_pred -C--------------------hhhcCCCCCCEEECCCCccCcC--------------------hhhcCCCCCCEEEccC
Confidence 0 1144567788888888865542 1145678899999999
Q ss_pred CCCCCCChhhhcCCCccEEEeeccCCC
Q 042336 791 YRGETLPSWIMSLNKLKKLELSFCNKF 817 (944)
Q Consensus 791 ~~~~~lp~~~~~l~~L~~L~L~~~~~~ 817 (944)
|....++. +..+++|+.|+|++|...
T Consensus 205 N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 205 NQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred CccCcccc-ccCCCCCCEEEccCCeee
Confidence 88777764 678899999999998754
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=7.3e-14 Score=150.30 Aligned_cols=230 Identities=14% Similarity=0.067 Sum_probs=158.3
Q ss_pred CCCCeeEEEEecCCcccccchhHHHH--hhcCCcccEEEeccCCCcccccccchhh--hcccccceeccCcccccc-cC-
Q 042336 552 NAKKLRSLLIHNIPIEVSSSPVLQVL--FNQFTCLRALKITRNSKENSIYEIPKEI--QKLIHLRYFKLHWLEIKE-LP- 625 (944)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~l~~~--~~~~~~Lr~L~L~~~~~~~~~~~lp~~i--~~l~~Lr~L~Ls~~~i~~-lP- 625 (944)
....++.+.+.+.... ...+..+ +..++.|++|++++|.. ....|..+ +.+++|++|+|++|.+.. .|
T Consensus 62 ~~~~l~~l~l~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 62 KALRVRRLTVGAAQVP---AQLLVGALRVLAYSRLKELTLEDLKI---TGTMPPLPLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp SSCCCCEEEECSCCCB---HHHHHHHHHHHHHSCCCEEEEESCCC---BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred hhcceeEEEEeCCcCC---HHHHHHHHHhcccCceeEEEeeCCEe---ccchhhhhhhccCCCCCEEEeecccccchhhh
Confidence 4456788888776532 1222222 23456799999999984 33566766 889999999999999874 22
Q ss_pred ---ccccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccc---cccc--ccCCCCCCcCCceEecccccCCC
Q 042336 626 ---DTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEY---MPKG--IERLTCLRTLSEFVVVSRSDKYG 697 (944)
Q Consensus 626 ---~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~---lp~~--i~~l~~L~~L~~~~~~~~~~~~~ 697 (944)
..+..+++|++|++++|......|..+..+++|++|+++.|.+.. ++.. ++.+++|++|. ...|.
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~----Ls~N~--- 208 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA----LRNTG--- 208 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB----CCSSC---
T ss_pred hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE----CCCCC---
Confidence 345679999999999998434445678999999999998887543 3322 36777788776 22211
Q ss_pred CcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccC
Q 042336 698 NKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEAL 777 (944)
Q Consensus 698 ~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 777 (944)
+..........+..+++|+.|++++|.+.+..+. ....+
T Consensus 209 --------------------------l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~---------------~~~~~ 247 (310)
T 4glp_A 209 --------------------------METPTGVCAALAAAGVQPHSLDLSHNSLRATVNP---------------SAPRC 247 (310)
T ss_dssp --------------------------CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS---------------CCSSC
T ss_pred --------------------------CCchHHHHHHHHhcCCCCCEEECCCCCCCccchh---------------hHHhc
Confidence 0111111112245678999999999976653100 01223
Q ss_pred CCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccc
Q 042336 778 RPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 778 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 838 (944)
..+++|+.|++++|....+|.++. ++|+.|+|++|.... +|.+..+++|+.|+++++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred cCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCC
Confidence 334799999999999888888763 899999999997664 4557888999999998764
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=1e-13 Score=147.07 Aligned_cols=107 Identities=22% Similarity=0.270 Sum_probs=68.9
Q ss_pred CCCCceEEEeeCCCCCCC-hhhhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeecccccceEeCccccCccCccCcc
Q 042336 780 PPNLESLDVWKYRGETLP-SWIMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPK 857 (944)
Q Consensus 780 ~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~ 857 (944)
+++|+.|++++|....+| ..+..+++|+.|+|++|......+. +..+++|+.|+++++. ++ ..
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-------~l------- 163 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LT-------EL------- 163 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CS-------CC-------
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CC-------cc-------
Confidence 344555555555555554 4566788899999998876654433 6778888888887653 11 10
Q ss_pred ccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeEEEecCcc
Q 042336 858 LKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 858 L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 919 (944)
.+..+..+++|+.|++++|. ++.+|..+..+++|+.|++++||.
T Consensus 164 -----------------~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 -----------------PAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -----------------CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred -----------------CHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence 11112356777777777774 567777777777788888877664
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=2.8e-14 Score=150.83 Aligned_cols=202 Identities=20% Similarity=0.171 Sum_probs=140.9
Q ss_pred CcccEEEeccCCCcccccccch-hhhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCcccC-cccccCCCC
Q 042336 582 TCLRALKITRNSKENSIYEIPK-EIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLP-QGVGKLVNL 658 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L 658 (944)
+.|++|++++|. +..++. .+.++++|++|++++|.+..+|. .+.++++|++|++++|. +..+| ..+.++++|
T Consensus 28 ~~l~~L~ls~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCC----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTC
T ss_pred CCccEEECCCCc----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccc
Confidence 469999999998 666664 78899999999999999987765 68899999999999998 55554 678999999
Q ss_pred ceeeccccccccccc-cccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhccc
Q 042336 659 RHLIFDVNFVEYMPK-GIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEK 737 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 737 (944)
++|+++.|.+..++. .++.+++|++|. ...|...... ....+..
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~~~~-------------------------------l~~~~~~ 147 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELN----VAHNLIQSFK-------------------------------LPEYFSN 147 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEE----CCSSCCCCCC-------------------------------CCGGGGG
T ss_pred cEEECCCCCccccCchhcccCCCCCEEE----CcCCccceec-------------------------------Cchhhcc
Confidence 999998888777765 477777777775 2222111100 0123455
Q ss_pred CCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCc-eEEEeeCCCCCCChhhhcCCCccEEEeeccCC
Q 042336 738 KKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLE-SLDVWKYRGETLPSWIMSLNKLKKLELSFCNK 816 (944)
Q Consensus 738 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 816 (944)
+++|+.|++++|.+....+ ..+..+...+.|. .|++++|....+|.......+|+.|+|++|..
T Consensus 148 l~~L~~L~Ls~N~l~~~~~---------------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYC---------------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 212 (276)
T ss_dssp CTTCCEEECCSSCCCEECG---------------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCC
T ss_pred CCCCCEEECCCCCCCcCCH---------------HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCce
Confidence 6778888888776543210 0111222223333 78888887777766655566888888888876
Q ss_pred CCcCCC-CCCCCCcceeeecccc
Q 042336 817 FEIMPP-LGKLPSLELLEVFALQ 838 (944)
Q Consensus 817 ~~~l~~-l~~l~~L~~L~L~~~~ 838 (944)
....+. ++.+++|+.|++++++
T Consensus 213 ~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 213 KSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCHhHhcccccccEEEccCCc
Confidence 544333 5778888888887654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=3.6e-14 Score=146.43 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=56.7
Q ss_pred cccEEEeccCCCcccccccch-hhhcccccceeccCccc-ccccCc-cccCCCcccEEEecCccCCcccCc-ccccCCCC
Q 042336 583 CLRALKITRNSKENSIYEIPK-EIQKLIHLRYFKLHWLE-IKELPD-TCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNL 658 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~-i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L 658 (944)
.|++|++++|. +..+|. .++.+++|++|++++|. +..+|. .+.++++|++|++++|..+..+|. .+..+++|
T Consensus 32 ~l~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIETH----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TCCEEEEESCC----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred cccEEEEeCCc----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 56777777776 555554 56677777777777775 666654 466777777777776323665553 45667777
Q ss_pred ceeeccccccccccc
Q 042336 659 RHLIFDVNFVEYMPK 673 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~ 673 (944)
++|+++.|.+..+|.
T Consensus 108 ~~L~l~~n~l~~lp~ 122 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPD 122 (239)
T ss_dssp CEEEEEEECCCSCCC
T ss_pred CEEeCCCCCCccccc
Confidence 777776666555553
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=1.2e-14 Score=158.77 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=107.6
Q ss_pred cccEEEeccCCCcccccccchhhhcc--cccceeccCcccccccCccccCCCcccEEEecCccCCcc-cCcccccCCCCc
Q 042336 583 CLRALKITRNSKENSIYEIPKEIQKL--IHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNR-LPQGVGKLVNLR 659 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~i~~l--~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~ 659 (944)
.++.|+++++. +. |..++.+ .+|++|+++++.+...+..+.++++|++|++++|..... +|..+..+++|+
T Consensus 48 ~~~~l~l~~~~----~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKN----LH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCB----CC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeecccccc----CC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 45666666554 22 3445555 566666666666655555555666666666666652212 555556666666
Q ss_pred eeeccccccc-cccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccC
Q 042336 660 HLIFDVNFVE-YMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKK 738 (944)
Q Consensus 660 ~L~l~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 738 (944)
+|++++|.+. ..|..++.+++|++|. ...+ ..+.. ......+..+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~----L~~~----------------------------~~l~~--~~l~~~~~~~ 167 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLN----LSGC----------------------------SGFSE--FALQTLLSSC 167 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEE----CTTC----------------------------BSCCH--HHHHHHHHHC
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEE----CCCC----------------------------CCCCH--HHHHHHHhcC
Confidence 6666554443 2344445555555543 1110 00000 0111234455
Q ss_pred CCcCcEEEEee-cCCCCchhhhhhhcCCCcccHHHHhccCCCCC-CCceEEEeeCC--C--CCCChhhhcCCCccEEEee
Q 042336 739 KNLLHLSLSFV-KRTDEEDEEEEVTEGKNEVSHEAICEALRPPP-NLESLDVWKYR--G--ETLPSWIMSLNKLKKLELS 812 (944)
Q Consensus 739 ~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~--~~lp~~~~~l~~L~~L~L~ 812 (944)
++|++|++++| .+.+ ..+...+..++ +|+.|++++|. . ..+|..+..+++|+.|+|+
T Consensus 168 ~~L~~L~l~~~~~l~~-----------------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 168 SRLDELNLSWCFDFTE-----------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TTCCEEECCCCTTCCH-----------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCEEcCCCCCCcCh-----------------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 66777777666 3332 11233334455 77777777763 1 2345566677888888888
Q ss_pred ccCCC--CcCCCCCCCCCcceeeecccc
Q 042336 813 FCNKF--EIMPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 813 ~~~~~--~~l~~l~~l~~L~~L~L~~~~ 838 (944)
+|... ..++.++.+++|++|++++|.
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 87742 224446677788888887765
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=1.8e-13 Score=144.02 Aligned_cols=123 Identities=27% Similarity=0.419 Sum_probs=95.3
Q ss_pred ccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCcc-c
Q 042336 550 MFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDT-C 628 (944)
Q Consensus 550 ~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~-i 628 (944)
...+++|+.|.+.++.... ++. +..+++|++|++++|. +..++ .++.+++|++|+|++|.+..+|.. +
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-----~~~-l~~l~~L~~L~l~~n~----l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-----VQG-IQYLPNVRYLALGGNK----LHDIS-ALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-----CTT-GGGCTTCCEEECTTSC----CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCCccc-----ccc-cccCCCCcEEECCCCC----CCCch-hhcCCCCCCEEECCCCccCccChhHh
Confidence 3457889999998876432 222 6789999999999998 55554 689999999999999999977765 6
Q ss_pred cCCCcccEEEecCccCCcccCcc-cccCCCCceeecccccccccccc-ccCCCCCCcC
Q 042336 629 CELFNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTL 684 (944)
Q Consensus 629 ~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L 684 (944)
+++++|++|++++|. +..+|.. +..+++|++|+++.|.+..+|.. ++.+++|+.|
T Consensus 106 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 106 DKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 899999999999998 6666654 78999999999988877666543 2444444444
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=3.4e-15 Score=166.40 Aligned_cols=245 Identities=18% Similarity=0.166 Sum_probs=161.0
Q ss_pred chhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhh-------hcccccceeccCc
Q 042336 546 FPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEI-------QKLIHLRYFKLHW 618 (944)
Q Consensus 546 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i-------~~l~~Lr~L~Ls~ 618 (944)
++..+..+++|++|.+.++.........+...+..+++|++|+|++|........+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 455667788999999998865332223344557789999999999886322122345444 6889999999999
Q ss_pred ccccc-----cCccccCCCcccEEEecCccCCc-----ccCcccccC---------CCCceeeccccccc--ccc---cc
Q 042336 619 LEIKE-----LPDTCCELFNLQTIEIEGCYNLN-----RLPQGVGKL---------VNLRHLIFDVNFVE--YMP---KG 674 (944)
Q Consensus 619 ~~i~~-----lP~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L---------~~L~~L~l~~~~~~--~lp---~~ 674 (944)
|.+.. +|..+.++++|++|+|++|. +. .++..+..+ ++|++|++++|.+. .+| ..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 99875 78888999999999999987 43 233444455 89999999887764 344 34
Q ss_pred ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChh-hhhhh-hcccCCCcCcEEEEeecCC
Q 042336 675 IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVH-EAKIV-ELEKKKNLLHLSLSFVKRT 752 (944)
Q Consensus 675 i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~-~~~~~-~l~~~~~L~~L~L~~~~~~ 752 (944)
+..+++|++|. ...|. +.... ..... .+..+++|+.|+|++|.+.
T Consensus 183 l~~~~~L~~L~----L~~n~-----------------------------l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 183 FQSHRLLHTVK----MVQNG-----------------------------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHCTTCCEEE----CCSSC-----------------------------CCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred HHhCCCcCEEE----CcCCC-----------------------------CCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 55666666664 22211 00000 01112 5566778888888877443
Q ss_pred CCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCC-----CChhhhc--CCCccEEEeeccCCCC----cCC
Q 042336 753 DEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGET-----LPSWIMS--LNKLKKLELSFCNKFE----IMP 821 (944)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~--l~~L~~L~L~~~~~~~----~l~ 821 (944)
+. ....++..+..+++|+.|+|++|.... +|.++.. +++|+.|+|++|.... .+|
T Consensus 230 ~~--------------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 230 HL--------------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp HH--------------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred cH--------------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 11 012345566677888888888887543 3555533 7888888888887665 244
Q ss_pred C-C-CCCCCcceeeecccc
Q 042336 822 P-L-GKLPSLELLEVFALQ 838 (944)
Q Consensus 822 ~-l-~~l~~L~~L~L~~~~ 838 (944)
. + .++|+|++|++++|.
T Consensus 296 ~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHCTTCCEEECTTSB
T ss_pred HHHHhcCCCceEEEccCCc
Confidence 3 3 457888888888765
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=5.7e-13 Score=140.13 Aligned_cols=171 Identities=21% Similarity=0.227 Sum_probs=109.5
Q ss_pred ccceeccCcccccccCccccCCCcccEEEecCccCCcccCc-ccccCCCCceeeccccccccccccc-cCCCCCCcCCce
Q 042336 610 HLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDVNFVEYMPKGI-ERLTCLRTLSEF 687 (944)
Q Consensus 610 ~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~~~ 687 (944)
.+++++++++.++.+|..+. .+|++|++++|. +..+|. .+.++++|++|+++.|.+..+|.++ ..+++|++|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~-- 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW-- 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE--
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE--
Confidence 57899999999999998765 689999999998 777765 7899999999999888888887664 6677777765
Q ss_pred EecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCc
Q 042336 688 VVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNE 767 (944)
Q Consensus 688 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 767 (944)
...+.... + . ...+..+++|+.|++++|.+...
T Consensus 92 --l~~n~l~~--------------~------------~------~~~~~~l~~L~~L~l~~n~l~~~------------- 124 (270)
T 2o6q_A 92 --VTDNKLQA--------------L------------P------IGVFDQLVNLAELRLDRNQLKSL------------- 124 (270)
T ss_dssp --CCSSCCCC--------------C------------C------TTTTTTCSSCCEEECCSSCCCCC-------------
T ss_pred --CCCCcCCc--------------C------------C------HhHcccccCCCEEECCCCccCee-------------
Confidence 22211000 0 0 01233455667777766644432
Q ss_pred ccHHHHhccCCCCCCCceEEEeeCCCCCCChh-hhcCCCccEEEeeccCCCCcCCC-CCCCCCcceeeeccc
Q 042336 768 VSHEAICEALRPPPNLESLDVWKYRGETLPSW-IMSLNKLKKLELSFCNKFEIMPP-LGKLPSLELLEVFAL 837 (944)
Q Consensus 768 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 837 (944)
....+..+++|+.|++++|....+|.. +..+++|+.|+|++|......+. +..+++|++|+++++
T Consensus 125 -----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 125 -----PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -----CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 122344556666666666665555543 44566666666666654433332 555666666666544
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=3.8e-13 Score=138.70 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=58.5
Q ss_pred ccccchhhhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCcccCc-ccccCCCCceeeccc-ccccccccc
Q 042336 598 IYEIPKEIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDV-NFVEYMPKG 674 (944)
Q Consensus 598 ~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~-~~~~~lp~~ 674 (944)
+..+|. +.. +|++|++++|.+..+|. .++++++|++|++++|..+..+|. .+..+++|++|+++. |.+..+|..
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 455666 333 78888888888887776 578888888888888864666665 577888888888865 766666532
Q ss_pred -ccCCCCCCcC
Q 042336 675 -IERLTCLRTL 684 (944)
Q Consensus 675 -i~~l~~L~~L 684 (944)
+..+++|+.|
T Consensus 100 ~f~~l~~L~~L 110 (239)
T 2xwt_C 100 ALKELPLLKFL 110 (239)
T ss_dssp SEECCTTCCEE
T ss_pred HhCCCCCCCEE
Confidence 3334444433
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=2.7e-13 Score=144.05 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=60.7
Q ss_pred hcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCC
Q 042336 579 NQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNL 658 (944)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 658 (944)
..+++|+.|++++|. +..++. ++.+++|++|+|++|.+..+|. ++++++|++|++++|. +..+|. +..+++|
T Consensus 43 ~~l~~L~~L~l~~~~----i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSD----IKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSC----CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTC
T ss_pred hhcCcccEEEccCCC----cccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCC
Confidence 345566777777666 555543 6667777777777777666665 6677777777777765 555543 6667777
Q ss_pred ceeeccccccccccccccCCCCCCcCC
Q 042336 659 RHLIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
++|+++.|.+..++ .+..+++|+.|+
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~ 140 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLY 140 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEE
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEE
Confidence 77777666555542 344444444443
No 96
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=4.6e-12 Score=140.90 Aligned_cols=296 Identities=13% Similarity=0.041 Sum_probs=181.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc----cc--CceeEEEEeCCCC-CHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI----NN--FEKRIWVSVSDPF-DEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~ 245 (944)
..++||+.+++++..++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988754211 1235689999999999999999999842111 11 3356788887777 888
Q ss_pred HHHHHHHHHhhCCCCC--CCCHHHHHHHHHHHhcCCceEEEeCCCCccCccC-hhhhHhhhccCCCCcEEEEEccchhhh
Q 042336 246 RVAKAIIEALEGSAPN--LGELNSLLQHICLSITGKKFLLVLDDVWTEDYSK-WEPFHNCLMNCLHGSKILVTTRKETVA 322 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~-~~~l~~~l~~~~~gs~iivTtr~~~v~ 322 (944)
.++..++.++.+.... ..........+...+..++.+|||||++.-.... .+.+...+.....+..||+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 9999999988543222 2234566677777777766699999996543222 233033333222678899999865321
Q ss_pred hcc------cccceEeCCCCChHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHhhC---CChhhH-HHHhhh--hcC-
Q 042336 323 RMM------ESIDILIIKELSELECWSLFKRFAFF-GRSPFECKQLEEIGRKIVGKCK---GLPLAA-KTIGSL--LRF- 388 (944)
Q Consensus 323 ~~~------~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---GlPlai-~~~~~~--l~~- 388 (944)
..+ .....+.+.+++.++..+++...+.. ....... ++..+.|++.++ |.|..+ ..+-.+ +..
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 11238999999999999999987531 1111111 344566777887 988733 333222 221
Q ss_pred --CCCHHHHHHHHhhhhhhhhhhccchhhHHHhhhhcChHHHHHHHhHhcccCCCceecHHHHHHHHHHcCCcccCCCch
Q 042336 389 --KRTTEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPSRIKRCFLYCAVFPKNYNIKKDELIKLWAAQGCIGTKGNKE 466 (944)
Q Consensus 389 --~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~ 466 (944)
.-+.+.+..++.... ...+..+++.|+++.|..+..++....+-.+. +.....--..| +.+ .
T Consensus 255 ~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~----~ 318 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP----L 318 (384)
T ss_dssp SSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC----C
T ss_pred CCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC----C
Confidence 225666666554321 13456677889988888777666611101111 11112222223 111 1
Q ss_pred HHHHHHHHHHHHHhccCCccccc
Q 042336 467 MEMIGEEYFDYLATRSFFQEFVE 489 (944)
Q Consensus 467 ~e~~~~~~~~~L~~~~li~~~~~ 489 (944)
......+++..|..+++++....
T Consensus 319 ~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 319 SYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEEec
Confidence 23456788999999999986543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=1.3e-12 Score=143.14 Aligned_cols=236 Identities=14% Similarity=0.116 Sum_probs=153.5
Q ss_pred cEEEeccCCCcccccccchhhhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCcccCc-ccccCCCCceee
Q 042336 585 RALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLI 662 (944)
Q Consensus 585 r~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 662 (944)
++++.+++. +.++|..+. .+|++|+|++|.|+.+|. .+.+|++|++|+|++|...+.+|. .+.+|++|+++.
T Consensus 12 ~~v~C~~~~----Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESK----VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTT----CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCC----CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 566666666 677777653 578888888888888876 478888888888888875565664 356777777643
Q ss_pred -cccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCC
Q 042336 663 -FDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKN 740 (944)
Q Consensus 663 -l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~ 740 (944)
+++|.+..+|.+ +..+++|+.|. ...|... .+... ......+
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~----l~~n~l~--------~~~~~------------------------~~~~~~~ 129 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLL----ISNTGIK--------HLPDV------------------------HKIHSLQ 129 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEE----EEEECCS--------SCCCC------------------------TTCCBSS
T ss_pred cccCCcccccCchhhhhcccccccc----ccccccc--------cCCch------------------------hhcccch
Confidence 466777777543 56777777765 2221111 00000 0111223
Q ss_pred cCcEEEEeec-CCCCchhhhhhhcCCCcccHHHHhccCCC-CCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCC
Q 042336 741 LLHLSLSFVK-RTDEEDEEEEVTEGKNEVSHEAICEALRP-PPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFE 818 (944)
Q Consensus 741 L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~ 818 (944)
+..|.+..+. +... ....+.. ...++.|++++|....+|.......+|+.|.+.++...+
T Consensus 130 l~~l~l~~~~~i~~l------------------~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~ 191 (350)
T 4ay9_X 130 KVLLDIQDNINIHTI------------------ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191 (350)
T ss_dssp CEEEEEESCTTCCEE------------------CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC
T ss_pred hhhhhhccccccccc------------------cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc
Confidence 4455555431 1110 0112222 346889999999988888877777889999999877777
Q ss_pred cCCC--CCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecc
Q 042336 819 IMPP--LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRD 892 (944)
Q Consensus 819 ~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 892 (944)
.+|. ++.+++|+.|+++++. ++.+ ....|.+|+.|...++.+++.+.. +..+++|+.+++.+
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N~-l~~l-------p~~~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRTR-IHSL-------PSYGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTY 255 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTSC-CCCC-------CSSSCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEECSC
T ss_pred CCCHHHhccCcccchhhcCCCC-cCcc-------ChhhhccchHhhhccCCCcCcCCC----chhCcChhhCcCCC
Confidence 7775 7889999999999764 3322 234577888888888776655443 44788899988865
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=7.8e-14 Score=152.22 Aligned_cols=201 Identities=21% Similarity=0.216 Sum_probs=129.5
Q ss_pred CcccEEEeccCCCcccccccchhhhcccccceeccCcccccc--cCccccCCCcccEEEecCccCCcccCcccccCCCCc
Q 042336 582 TCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKE--LPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLR 659 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~--lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 659 (944)
+.+++|+++++. +...+..+..+++|++|+|++|.+.. +|..+.++++|++|++++|......|..+.++++|+
T Consensus 70 ~~l~~L~l~~n~----l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSF----MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCE----ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCcc----ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 677888887776 55555556677888888888887652 677777888888888888763345666777788888
Q ss_pred eeecccc-ccc--cccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcc
Q 042336 660 HLIFDVN-FVE--YMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELE 736 (944)
Q Consensus 660 ~L~l~~~-~~~--~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 736 (944)
+|++++| .+. .+|..+..+++|++|+ ...+ ..+.. ......+.
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~----l~~~----------------------------~~l~~--~~~~~~~~ 191 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELN----LSWC----------------------------FDFTE--KHVQVAVA 191 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEE----CCCC----------------------------TTCCH--HHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEc----CCCC----------------------------CCcCh--HHHHHHHH
Confidence 8888665 444 2454455566666654 1110 00100 11123345
Q ss_pred cCC-CcCcEEEEeec--CCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCC--CCCChhhhcCCCccEEEe
Q 042336 737 KKK-NLLHLSLSFVK--RTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRG--ETLPSWIMSLNKLKKLEL 811 (944)
Q Consensus 737 ~~~-~L~~L~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~lp~~~~~l~~L~~L~L 811 (944)
.++ +|++|++++|. +. ...++..+..+++|+.|++++|.. ...+..+..+++|+.|+|
T Consensus 192 ~l~~~L~~L~l~~~~~~~~-----------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQ-----------------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp HSCTTCCEEECCSCGGGSC-----------------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred hcccCCCEEEeCCCcccCC-----------------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 566 88888887772 21 122344445577899999988873 245667778899999999
Q ss_pred eccCCCC--cCCCCCCCCCcceeeeccc
Q 042336 812 SFCNKFE--IMPPLGKLPSLELLEVFAL 837 (944)
Q Consensus 812 ~~~~~~~--~l~~l~~l~~L~~L~L~~~ 837 (944)
++|.... .+..++.+++|+.|++.+|
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9886322 1223667888888888765
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=6.8e-13 Score=154.71 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=36.7
Q ss_pred CCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCce
Q 042336 581 FTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRH 660 (944)
Q Consensus 581 ~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 660 (944)
+++|+.|++++|. +..+| .++.|++|++|+|++|.+..+|. +++|++|+.|+|++|. +..+| .+..|++|++
T Consensus 42 L~~L~~L~l~~n~----i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNSD----IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTCC----CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred CCCCCEEECcCCC----CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence 3444444444444 33333 24444444444444444444443 4444444444444443 33333 3444444444
Q ss_pred eecccccccc
Q 042336 661 LIFDVNFVEY 670 (944)
Q Consensus 661 L~l~~~~~~~ 670 (944)
|+++.|.+..
T Consensus 114 L~Ls~N~l~~ 123 (605)
T 1m9s_A 114 LSLEHNGISD 123 (605)
T ss_dssp EECTTSCCCC
T ss_pred EEecCCCCCC
Confidence 4444444333
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=7.6e-15 Score=173.95 Aligned_cols=330 Identities=16% Similarity=0.079 Sum_probs=173.8
Q ss_pred CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcc-------ccccc
Q 042336 552 NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWL-------EIKEL 624 (944)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~-------~i~~l 624 (944)
.+++|++|.+.++.. ......+..++.++++|++|+|++|.. +..+|..+.++++|++|+++.+ .+..+
T Consensus 182 ~~~~L~~L~l~~~~~-~~~~~~l~~l~~~~~~L~~L~L~~~~~---~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 182 TYTSLVSLNISCLAS-EVSFSALERLVTRCPNLKSLKLNRAVP---LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp TCCCCCEEECTTCCS-CCCHHHHHHHHHHCTTCCEEECCTTSC---HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred cCCcCcEEEecccCC-cCCHHHHHHHHHhCCCCcEEecCCCCc---HHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 556666666666541 111233455455667777777776632 4446666666777777764433 23345
Q ss_pred CccccCCCcccEE-EecCccCCcccCcccccCCCCceeecccccccc--ccccccCCCCCCcCCceEecccccCCCC-cc
Q 042336 625 PDTCCELFNLQTI-EIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEY--MPKGIERLTCLRTLSEFVVVSRSDKYGN-KA 700 (944)
Q Consensus 625 P~~i~~L~~L~~L-~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~~~~~~~~~~~~~~-~~ 700 (944)
+..+.++++|+.| .+.... ...+|..+..+++|++|+++.|.+.. ++..+..+++|++|.. ..+ .... ..
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l----~~~-~~~~~l~ 331 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV----LDY-IEDAGLE 331 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEE----EGG-GHHHHHH
T ss_pred HHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeC----cCc-cCHHHHH
Confidence 5566666666666 343332 34455555677888888886665432 2222456777877762 221 0000 01
Q ss_pred cccccCcCcccCCceEEEcCcc-----CcCChhhhhhhh-cccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHh
Q 042336 701 CNLGGLRQLNHLRGSLRIRGLR-----NVTDVHEAKIVE-LEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAIC 774 (944)
Q Consensus 701 ~~l~~l~~L~~L~~~l~i~~l~-----~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (944)
.....+++|+ .+.+..+. ............ ...+++|++|.+.++.+.+. .+.
T Consensus 332 ~l~~~~~~L~----~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~-----------------~~~ 390 (594)
T 2p1m_B 332 VLASTCKDLR----ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA-----------------ALI 390 (594)
T ss_dssp HHHHHCTTCC----EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH-----------------HHH
T ss_pred HHHHhCCCCC----EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH-----------------HHH
Confidence 1112344444 44442210 111112222222 23478888887766644321 111
Q ss_pred ccCCCCCCCceEEEe--e----CCCCCCC------hhhhcCCCccEEEeeccCCCCcCCCCCC-CCCcceeeecccccce
Q 042336 775 EALRPPPNLESLDVW--K----YRGETLP------SWIMSLNKLKKLELSFCNKFEIMPPLGK-LPSLELLEVFALQSVK 841 (944)
Q Consensus 775 ~~l~~~~~L~~L~l~--~----~~~~~lp------~~~~~l~~L~~L~L~~~~~~~~l~~l~~-l~~L~~L~L~~~~~l~ 841 (944)
.....+++|+.|+++ + +.....| ..+..+++|+.|+|+++.....++.++. +++|+.|.+++|. +
T Consensus 391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i- 468 (594)
T 2p1m_B 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-D- 468 (594)
T ss_dssp HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-S-
T ss_pred HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-C-
Confidence 111236789999999 3 2233232 2255789999999976222222233443 7899999998875 2
Q ss_pred EeCccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCC-CCCCCcCeEEEecCc
Q 042336 842 RVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQI-LGNTTLQMLKIYNCR 918 (944)
Q Consensus 842 ~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~ 918 (944)
...........+++|+.|.+.++.. ..... ......+++|+.|+|++|+........+ ..+|.|+...+..+.
T Consensus 469 --~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 469 --SDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL-LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp --SHHHHHHHHHHCTTCCEEEEESCSC-CHHHH-HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred --cHHHHHHHHhcCCCcCEEECcCCCC-cHHHH-HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 1111111112467888887776653 11111 1123468999999999998632211111 345677665555443
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=145.07 Aligned_cols=228 Identities=14% Similarity=0.091 Sum_probs=154.3
Q ss_pred CceEEEEEEeCCCCc--c--hhhccCCCCeeEEEEecCCcccccchhHHHHh--hcCCcccEEEeccCCCcccccccc-h
Q 042336 531 EELRHSMLVFGNEAS--F--PVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLF--NQFTCLRALKITRNSKENSIYEIP-K 603 (944)
Q Consensus 531 ~~~r~lsl~~~~~~~--~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~--~~~~~Lr~L~L~~~~~~~~~~~lp-~ 603 (944)
..++++.+....... + ......+++|+.|.+.++..... .+..+ ..+++|++|+|++|........++ .
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT----MPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC----CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc----hhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 346677776655432 1 11223457799999999874321 12223 788999999999998422111122 3
Q ss_pred hhhcccccceeccCcccccccC-ccccCCCcccEEEecCccCCcc--cC--cccccCCCCceeecccccccccccc----
Q 042336 604 EIQKLIHLRYFKLHWLEIKELP-DTCCELFNLQTIEIEGCYNLNR--LP--QGVGKLVNLRHLIFDVNFVEYMPKG---- 674 (944)
Q Consensus 604 ~i~~l~~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~--lp--~~i~~L~~L~~L~l~~~~~~~lp~~---- 674 (944)
.+..+++|++|+|++|.+..+| ..++++++|++|++++|..... +| ..+..+++|++|+++.|.+..+|..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 4567999999999999998665 6789999999999999973321 33 2347899999999998888766653
Q ss_pred ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCC
Q 042336 675 IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDE 754 (944)
Q Consensus 675 i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 754 (944)
++.+++|++|+ .+.|...+..+..+.. +..+++|++|++++|.+..
T Consensus 220 ~~~l~~L~~L~----Ls~N~l~~~~p~~~~~-----------------------------~~~~~~L~~L~Ls~N~l~~- 265 (310)
T 4glp_A 220 AAAGVQPHSLD----LSHNSLRATVNPSAPR-----------------------------CMWSSALNSLNLSFAGLEQ- 265 (310)
T ss_dssp HHHTCCCSSEE----CTTSCCCCCCCSCCSS-----------------------------CCCCTTCCCEECCSSCCCS-
T ss_pred HhcCCCCCEEE----CCCCCCCccchhhHHh-----------------------------ccCcCcCCEEECCCCCCCc-
Confidence 46678888886 4443322211211111 1123578899998886553
Q ss_pred chhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCC
Q 042336 755 EDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKF 817 (944)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 817 (944)
++..+ +++|+.|++++|....+|. +..+++|+.|+|++|...
T Consensus 266 ------------------lp~~~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 266 ------------------VPKGL--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ------------------CCSCC--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred ------------------hhhhh--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 23333 2699999999999877766 568899999999998754
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=7.3e-15 Score=163.63 Aligned_cols=217 Identities=15% Similarity=0.124 Sum_probs=150.1
Q ss_pred HHHHhhcCCcccEEEeccCCCccc-ccccchhhhcccccceeccCccccc----ccCccc-------cCCCcccEEEecC
Q 042336 574 LQVLFNQFTCLRALKITRNSKENS-IYEIPKEIQKLIHLRYFKLHWLEIK----ELPDTC-------CELFNLQTIEIEG 641 (944)
Q Consensus 574 l~~~~~~~~~Lr~L~L~~~~~~~~-~~~lp~~i~~l~~Lr~L~Ls~~~i~----~lP~~i-------~~L~~L~~L~L~~ 641 (944)
+...+..+++|++|+|++|..... ...++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 344478899999999999983111 0114455778999999999998654 345444 7899999999999
Q ss_pred ccCCcc-----cCcccccCCCCceeecccccccc-----ccccccCC---------CCCCcCCceEecccccCCCCcccc
Q 042336 642 CYNLNR-----LPQGVGKLVNLRHLIFDVNFVEY-----MPKGIERL---------TCLRTLSEFVVVSRSDKYGNKACN 702 (944)
Q Consensus 642 ~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~-----lp~~i~~l---------~~L~~L~~~~~~~~~~~~~~~~~~ 702 (944)
|. +.. +|..+.++++|++|++++|.+.. ++..+..+ ++|++|. ...|.
T Consensus 104 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~----L~~n~-------- 170 (386)
T 2ca6_A 104 NA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII----CGRNR-------- 170 (386)
T ss_dssp CC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE----CCSSC--------
T ss_pred Cc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE----CCCCC--------
Confidence 98 544 78888999999999998887653 22223333 4555554 11110
Q ss_pred cccCcCcccCCceEEEcCccCcC-ChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhc-cCCCC
Q 042336 703 LGGLRQLNHLRGSLRIRGLRNVT-DVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICE-ALRPP 780 (944)
Q Consensus 703 l~~l~~L~~L~~~l~i~~l~~~~-~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 780 (944)
+. .........+..+++|+.|++++|.+.... ...+.. .+..+
T Consensus 171 ---------------------l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g--------------~~~l~~~~l~~~ 215 (386)
T 2ca6_A 171 ---------------------LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG--------------IEHLLLEGLAYC 215 (386)
T ss_dssp ---------------------CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH--------------HHHHHHTTGGGC
T ss_pred ---------------------CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH--------------HHHHHHHHhhcC
Confidence 11 001112235667789999999998654210 111233 67788
Q ss_pred CCCceEEEeeCCC-----CCCChhhhcCCCccEEEeeccCCCCc----CCC-C--CCCCCcceeeecccc
Q 042336 781 PNLESLDVWKYRG-----ETLPSWIMSLNKLKKLELSFCNKFEI----MPP-L--GKLPSLELLEVFALQ 838 (944)
Q Consensus 781 ~~L~~L~l~~~~~-----~~lp~~~~~l~~L~~L~L~~~~~~~~----l~~-l--~~l~~L~~L~L~~~~ 838 (944)
++|+.|+|++|.. ..+|.++..+++|+.|+|++|..... ++. + +.+++|++|+|++|.
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 9999999999986 45678888999999999999986543 222 3 558999999999876
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=1.7e-12 Score=134.81 Aligned_cols=172 Identities=20% Similarity=0.217 Sum_probs=109.9
Q ss_pred CcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCcccC-cccccCCCCc
Q 042336 582 TCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLP-QGVGKLVNLR 659 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~ 659 (944)
...++++++++. +..+|..+. .+|++|+|++|.+..++. .++++++|++|++++|. +..++ ..+..+++|+
T Consensus 14 ~~~~~l~~~~~~----l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 14 EGKKEVDCQGKS----LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGGTEEECTTCC----CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred CCCeEEecCCCC----ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCC
Confidence 346788888887 777777665 578888888888876654 58888888888888887 55444 4478888888
Q ss_pred eeecccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccC
Q 042336 660 HLIFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKK 738 (944)
Q Consensus 660 ~L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 738 (944)
+|+++.|.+..+|.. +..+++|++|
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L------------------------------------------------------ 112 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKL------------------------------------------------------ 112 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEE------------------------------------------------------
T ss_pred EEECCCCcccccChhHhcccCCCCEE------------------------------------------------------
Confidence 888877776666543 3444444443
Q ss_pred CCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCCh-hhhcCCCccEEEeeccCCC
Q 042336 739 KNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPS-WIMSLNKLKKLELSFCNKF 817 (944)
Q Consensus 739 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~ 817 (944)
++++|.+... ....+..+++|+.|++++|....+|. .+..+++|+.|+|++|...
T Consensus 113 ------~L~~N~l~~~------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 113 ------YLGGNQLKSL------------------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ------ECCSSCCCCC------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ------EcCCCcCCCc------------------ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 3333332211 01123445566666666666555554 4556677777777777655
Q ss_pred CcCC-CCCCCCCcceeeecccc
Q 042336 818 EIMP-PLGKLPSLELLEVFALQ 838 (944)
Q Consensus 818 ~~l~-~l~~l~~L~~L~L~~~~ 838 (944)
...+ .+..+++|+.|++.+++
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCHHHHhCCCCCCEEEeeCCc
Confidence 4433 26667777777776544
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=1.2e-11 Score=137.78 Aligned_cols=295 Identities=14% Similarity=0.061 Sum_probs=180.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc----ccCceeEEEEeCCCCCHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI----NNFEKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~ 248 (944)
..++||+.+++++..++..... ......+.|+|++|+||||+|+.+++..... +.-...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 6799999999999998854311 1345678999999999999999999842111 001346788888888999999
Q ss_pred HHHHHHhhCCCCCC-CCHHHHHHHHHHHh--cCCceEEEeCCCCccCcc--ChhhhHhhhccC-----CCCcEEEEEccc
Q 042336 249 KAIIEALEGSAPNL-GELNSLLQHICLSI--TGKKFLLVLDDVWTEDYS--KWEPFHNCLMNC-----LHGSKILVTTRK 318 (944)
Q Consensus 249 ~~i~~~l~~~~~~~-~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~--~~~~l~~~l~~~-----~~gs~iivTtr~ 318 (944)
..++.+++...+.. .....+...+...+ .+++.+|||||++.-... ..+.+...+... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999997643322 23555566666666 456889999999653222 123333333321 345678888876
Q ss_pred hhhhhcc-----cc--cceEeCCCCChHHHHHHHHHHhcC--CCCCCCchhHHHHHHHHHHhhC---CChhhHH-HHhhh
Q 042336 319 ETVARMM-----ES--IDILIIKELSELECWSLFKRFAFF--GRSPFECKQLEEIGRKIVGKCK---GLPLAAK-TIGSL 385 (944)
Q Consensus 319 ~~v~~~~-----~~--~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---GlPlai~-~~~~~ 385 (944)
......+ .. ...+.+.+++.++..+++...+.. ...... ++..+.+++.++ |.|..+. .+..+
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD----PDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC----SSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 5322111 11 147899999999999999887431 111111 234566778887 9994333 22222
Q ss_pred hc-----CC--CCHHHHHHHHhhhhhhhhhhccchhhHHHhhhhcChHHHHHHHhHhc-ccCCCceecHHHHHHHH----
Q 042336 386 LR-----FK--RTTEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPSRIKRCFLYCA-VFPKNYNIKKDELIKLW---- 453 (944)
Q Consensus 386 l~-----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~i~~~~li~~w---- 453 (944)
.. .. -+.+.+...+.... ...+.-++..|+++.+..+..++ ++.....+....+.+..
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 11 11 14555555544321 12355677889988887776666 44322244444333332
Q ss_pred HHcCCcccCCCchHHHHHHHHHHHHHhccCCcccc
Q 042336 454 AAQGCIGTKGNKEMEMIGEEYFDYLATRSFFQEFV 488 (944)
Q Consensus 454 ~aeg~i~~~~~~~~e~~~~~~~~~L~~~~li~~~~ 488 (944)
-..| +.+ ........+++.|...|+++...
T Consensus 323 ~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 323 STLG-LEH----VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHTT-CCC----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhcC-CCC----CCHHHHHHHHHHHHhCCCeEEEe
Confidence 2223 111 12356678899999999998754
No 105
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.39 E-value=2.4e-11 Score=135.43 Aligned_cols=298 Identities=12% Similarity=0.054 Sum_probs=185.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC-ceeEEEEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF-EKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 251 (944)
..++||+.+++++..++........+..+.+.|+|++|+||||||+.+++. ..... ...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999886421101122347899999999999999999873 32221 356788888888889999999
Q ss_pred HHHhhCCCCC-CCCHHHHHHHHHHHhc--CCceEEEeCCCCccCccChhhhHhhhccCC----CCcEEEEEccchhhhhc
Q 042336 252 IEALEGSAPN-LGELNSLLQHICLSIT--GKKFLLVLDDVWTEDYSKWEPFHNCLMNCL----HGSKILVTTRKETVARM 324 (944)
Q Consensus 252 ~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~~ 324 (944)
+..++...+. ......+...+...+. +++.+||||+++..+......+...+.... .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9988754332 2244555555555543 668899999996654444445554443211 46778888876543332
Q ss_pred cc-------ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhh---------CCChhhHHHHhhhhc-
Q 042336 325 ME-------SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKC---------KGLPLAAKTIGSLLR- 387 (944)
Q Consensus 325 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~GlPlai~~~~~~l~- 387 (944)
.. ....+.+.+++.++..+++...+....... .-.++..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 123699999999999999988753210000 11145677888888 798865554433221
Q ss_pred -----CC--CCHHHHHHHHhhhhhhhhhhccchhhHHHhhhhcChHHHHHHHhHhcccC---CCceecHHHHHHHHHH--
Q 042336 388 -----FK--RTTEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPSRIKRCFLYCAVFP---KNYNIKKDELIKLWAA-- 455 (944)
Q Consensus 388 -----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~i~~~~li~~w~a-- 455 (944)
.. -+.+......... ....+.-.+..||.+.+.++..++.+. .+-.+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 1223222222211 111233446778888888887777654 2224566666655533
Q ss_pred --cCCcccCCCchHHHHHHHHHHHHHhccCCccccc
Q 042336 456 --QGCIGTKGNKEMEMIGEEYFDYLATRSFFQEFVE 489 (944)
Q Consensus 456 --eg~i~~~~~~~~e~~~~~~~~~L~~~~li~~~~~ 489 (944)
.|. .+. .......++++|...++|.....
T Consensus 323 ~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 323 EEYGE-RPR----VHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHTTC-CCC----CHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHcCC-CCC----CHHHHHHHHHHHHhCCCeEEeee
Confidence 231 111 12456788999999999987554
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=7.2e-13 Score=154.52 Aligned_cols=187 Identities=21% Similarity=0.251 Sum_probs=141.0
Q ss_pred cccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceee
Q 042336 583 CLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLI 662 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 662 (944)
.+..+.+..+. +..++. +..|.+|++|++++|.+..+| .++.|++|+.|+|++|. +..+|. +..|++|++|+
T Consensus 22 ~l~~l~l~~~~----i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNLKKKS----VTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHTTCSC----TTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEE
T ss_pred HHHHHhccCCC----cccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEE
Confidence 34455566555 444433 678999999999999999987 68999999999999998 777776 99999999999
Q ss_pred ccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcC
Q 042336 663 FDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLL 742 (944)
Q Consensus 663 l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 742 (944)
++.|.+..+| .+..+++|+.|. ...|. +.. + ..+..+++|+
T Consensus 94 Ls~N~l~~l~-~l~~l~~L~~L~----Ls~N~--------l~~------------------l--------~~l~~l~~L~ 134 (605)
T 1m9s_A 94 LDENKIKDLS-SLKDLKKLKSLS----LEHNG--------ISD------------------I--------NGLVHLPQLE 134 (605)
T ss_dssp CCSSCCCCCT-TSTTCTTCCEEE----CTTSC--------CCC------------------C--------GGGGGCTTCS
T ss_pred CcCCCCCCCh-hhccCCCCCEEE----ecCCC--------CCC------------------C--------ccccCCCccC
Confidence 9998888766 677778887775 22211 000 0 2245567888
Q ss_pred cEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC
Q 042336 743 HLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP 822 (944)
Q Consensus 743 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 822 (944)
.|+|+.|.+... ..+..+++|+.|+|++|....++. +..+++|+.|+|++|.... ++.
T Consensus 135 ~L~Ls~N~l~~l--------------------~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~~ 192 (605)
T 1m9s_A 135 SLYLGNNKITDI--------------------TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LRA 192 (605)
T ss_dssp EEECCSSCCCCC--------------------GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CGG
T ss_pred EEECCCCccCCc--------------------hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC-ChH
Confidence 899988865431 345667889999999888777765 7788899999999886554 567
Q ss_pred CCCCCCcceeeecccc
Q 042336 823 LGKLPSLELLEVFALQ 838 (944)
Q Consensus 823 l~~l~~L~~L~L~~~~ 838 (944)
+..+++|+.|+|++|.
T Consensus 193 l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQE 208 (605)
T ss_dssp GTTCTTCSEEECCSEE
T ss_pred HccCCCCCEEEccCCc
Confidence 8888888888888765
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=2.3e-12 Score=136.79 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=94.6
Q ss_pred cCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccC
Q 042336 551 FNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCE 630 (944)
Q Consensus 551 ~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~ 630 (944)
..+++|+.|.+.++.... ++. +..+++|++|+|++|. +..++. ++++++|++|++++|.+..+|. +++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-----~~~-~~~l~~L~~L~L~~n~----l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-----VQG-IQYLPNVTKLFLNGNK----LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKD 110 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-----CTT-GGGCTTCCEEECCSSC----CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred hhcCcccEEEccCCCccc-----Chh-HhcCCCCCEEEccCCc----cCCCcc-cccCCCCCEEECCCCcCCCChh-hcc
Confidence 457889999998876432 222 7889999999999998 777776 9999999999999999988775 899
Q ss_pred CCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcC
Q 042336 631 LFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTL 684 (944)
Q Consensus 631 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 684 (944)
+++|++|++++|. +..++ .+..+++|++|+++.|.+..+ ..++.+++|+.|
T Consensus 111 l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 111 LKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL 161 (291)
T ss_dssp CTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred CCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEE
Confidence 9999999999997 77764 688999999999988766654 234444444443
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=9.9e-13 Score=137.31 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=112.7
Q ss_pred cCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCc
Q 042336 580 QFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLR 659 (944)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 659 (944)
.+..+..++++++. +..++ .+..+.+|++|++++|.+..+| .++.+++|++|++++|. +..+|. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~----i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQS----VTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSC----TTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCC
T ss_pred HHHHHHHHHhcCCC----ccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCC
Confidence 44556677777777 66666 5788888899999888888887 68888889999998887 777776 88888888
Q ss_pred eeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCC
Q 042336 660 HLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKK 739 (944)
Q Consensus 660 ~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 739 (944)
+|+++.|.+..+|.... +
T Consensus 89 ~L~L~~N~l~~l~~~~~--~------------------------------------------------------------ 106 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS--A------------------------------------------------------------ 106 (263)
T ss_dssp EEECCSSCCSCCTTCCC--S------------------------------------------------------------
T ss_pred EEECCCCccCCcCcccc--C------------------------------------------------------------
Confidence 88887776655543111 2
Q ss_pred CcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCc
Q 042336 740 NLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEI 819 (944)
Q Consensus 740 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~ 819 (944)
+|+.|++++|.+.+. ..+..+++|+.|++++|....+| .+..+++|+.|++++|...+.
T Consensus 107 ~L~~L~L~~N~l~~~--------------------~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT--------------------DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SCCEEECCSSCCSBS--------------------GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred cccEEEccCCccCCC--------------------hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 334444444432211 12344556666666666655554 456677777777777765543
Q ss_pred CCCCCCCCCcceeeecccc
Q 042336 820 MPPLGKLPSLELLEVFALQ 838 (944)
Q Consensus 820 l~~l~~l~~L~~L~L~~~~ 838 (944)
+.+..+++|+.|+++++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCc
Confidence 556777777777777654
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=2.4e-12 Score=148.25 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=56.4
Q ss_pred cccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceee
Q 042336 583 CLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLI 662 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 662 (944)
+|++|+|++|. +..+|..+. ++|++|+|++|.+..+| +.+.+|++|++++|. +..+|. +.+ +|++|+
T Consensus 60 ~L~~L~Ls~n~----L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLN----LSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSC----CSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCC----CCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEE
Confidence 67777777766 555665553 56777777777777666 346677777777765 555666 544 677777
Q ss_pred ccccccccccccccCCCCCCcCC
Q 042336 663 FDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 663 l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
++.|.+..+|. .+++|+.|+
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYIN 146 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEE
T ss_pred CCCCcCCCCCC---cCccccEEe
Confidence 76666666665 455565554
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.33 E-value=4.2e-12 Score=138.92 Aligned_cols=217 Identities=15% Similarity=0.121 Sum_probs=139.8
Q ss_pred CcccEEEeccCCCcccccccch-hhhcccccceeccCccccc-ccCc-cccCCCcccEEEecCccCCcccC-cccccCCC
Q 042336 582 TCLRALKITRNSKENSIYEIPK-EIQKLIHLRYFKLHWLEIK-ELPD-TCCELFNLQTIEIEGCYNLNRLP-QGVGKLVN 657 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~-~lP~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~ 657 (944)
++++.|+|++|. +..+|. ++.++++|++|+|++|.+. .+|. .+.+|.+|+.+...++..+..+| ..+..+++
T Consensus 30 ~~l~~L~Ls~N~----i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCC----CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCEEEccCCc----CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 578999999998 888885 5789999999999999974 5664 47889888875554444477774 56789999
Q ss_pred Cceeecccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcc
Q 042336 658 LRHLIFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELE 736 (944)
Q Consensus 658 L~~L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 736 (944)
|++|++++|.+..+|.. +....++..|. ... ...+. .... ..+.
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~----l~~-------------~~~i~---------------~l~~---~~f~ 150 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLD----IQD-------------NINIH---------------TIER---NSFV 150 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEE----EES-------------CTTCC---------------EECT---TSST
T ss_pred cccccccccccccCCchhhcccchhhhhh----hcc-------------ccccc---------------cccc---cchh
Confidence 99999988888777653 22222232222 000 00000 0000 1112
Q ss_pred cC-CCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEee-CCCCCCCh-hhhcCCCccEEEeec
Q 042336 737 KK-KNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWK-YRGETLPS-WIMSLNKLKKLELSF 813 (944)
Q Consensus 737 ~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~lp~-~~~~l~~L~~L~L~~ 813 (944)
.+ ..++.|+++.|.+.. +........+|+.|.+.+ +....+|. .+..+++|+.|+|++
T Consensus 151 ~~~~~l~~L~L~~N~i~~-------------------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQE-------------------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp TSBSSCEEEECCSSCCCE-------------------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hcchhhhhhccccccccC-------------------CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 22 357778888886543 233333456789999975 56777886 467899999999999
Q ss_pred cCCCCcCCCCCCCCCcceeeecccccceEeCccccCccCccCccccccccc
Q 042336 814 CNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFV 864 (944)
Q Consensus 814 ~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~ 864 (944)
|... .+|. +.+.+|+.|.+.++..++.++. ...|++|+.+.+.
T Consensus 212 N~l~-~lp~-~~~~~L~~L~~l~~~~l~~lP~------l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 212 TRIH-SLPS-YGLENLKKLRARSTYNLKKLPT------LEKLVALMEASLT 254 (350)
T ss_dssp SCCC-CCCS-SSCTTCCEEECTTCTTCCCCCC------TTTCCSCCEEECS
T ss_pred CCcC-ccCh-hhhccchHhhhccCCCcCcCCC------chhCcChhhCcCC
Confidence 9654 4554 3466777777776665554431 1245566655543
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=6.4e-13 Score=146.29 Aligned_cols=242 Identities=11% Similarity=0.065 Sum_probs=155.0
Q ss_pred chhhccCCCCeeEEEEecCCcccccchhHHHHhhcCC-cccEEEeccCCCccccccc-chhhhcc-----cccceeccCc
Q 042336 546 FPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFT-CLRALKITRNSKENSIYEI-PKEIQKL-----IHLRYFKLHW 618 (944)
Q Consensus 546 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~-~Lr~L~L~~~~~~~~~~~l-p~~i~~l-----~~Lr~L~Ls~ 618 (944)
.+..+...++|+.|++.++.........+...+.+++ +|++|+|++|. +... +..+..+ ++|++|+|++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS----LGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC----GGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC----CCHHHHHHHHHHHhccCCCccEEECcC
Confidence 3444555666999999998754433333445678888 89999999998 5443 5566665 8999999999
Q ss_pred ccccccCc-c----ccCC-CcccEEEecCccCCcccCc-c----ccc-CCCCceeeccccccc-----cccccccCCC-C
Q 042336 619 LEIKELPD-T----CCEL-FNLQTIEIEGCYNLNRLPQ-G----VGK-LVNLRHLIFDVNFVE-----YMPKGIERLT-C 680 (944)
Q Consensus 619 ~~i~~lP~-~----i~~L-~~L~~L~L~~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~~-----~lp~~i~~l~-~ 680 (944)
|.+...+. . +..+ .+|++|++++|. +...+. . +.. .++|++|+++.|.+. .++..+..++ +
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 99874443 2 4445 899999999998 555443 2 333 368999999888766 3444444444 6
Q ss_pred CCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccC-CCcCcEEEEeecCCCCchhhh
Q 042336 681 LRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKK-KNLLHLSLSFVKRTDEEDEEE 759 (944)
Q Consensus 681 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~ 759 (944)
|++|+ ...|.... .........+... ++|+.|+|++|.+.+..
T Consensus 169 L~~L~----Ls~n~l~~----------------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---- 212 (362)
T 3goz_A 169 VNSLN----LRGNNLAS----------------------------KNCAELAKFLASIPASVTSLDLSANLLGLKS---- 212 (362)
T ss_dssp CCEEE----CTTSCGGG----------------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSC----
T ss_pred ccEee----ecCCCCch----------------------------hhHHHHHHHHHhCCCCCCEEECCCCCCChhH----
Confidence 66664 22211100 0011222234445 48999999988654321
Q ss_pred hhhcCCCcccHHHHhccCCC-CCCCceEEEeeCCCCCCCh-----hhhcCCCccEEEeeccCCCCc-------C-CCCCC
Q 042336 760 EVTEGKNEVSHEAICEALRP-PPNLESLDVWKYRGETLPS-----WIMSLNKLKKLELSFCNKFEI-------M-PPLGK 825 (944)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~lp~-----~~~~l~~L~~L~L~~~~~~~~-------l-~~l~~ 825 (944)
...+...+.. +++|+.|+|++|.....+. .+..+++|+.|+|++|..... + ..+..
T Consensus 213 ----------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 213 ----------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp ----------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred ----------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 2223444433 4689999999988665543 334678999999999862211 1 23667
Q ss_pred CCCcceeeecccc
Q 042336 826 LPSLELLEVFALQ 838 (944)
Q Consensus 826 l~~L~~L~L~~~~ 838 (944)
+++|+.|+++++.
T Consensus 283 l~~L~~LdL~~N~ 295 (362)
T 3goz_A 283 IQKIILVDKNGKE 295 (362)
T ss_dssp CCEEEEECTTSCB
T ss_pred CCceEEEecCCCc
Confidence 8889999998765
No 112
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=7.9e-11 Score=131.01 Aligned_cols=294 Identities=13% Similarity=0.117 Sum_probs=175.0
Q ss_pred CCccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC---ceeEEEEeCCCCCHHHHH
Q 042336 172 VSEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF---EKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 172 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~ 248 (944)
+..++||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999998864211 134568899999999999999999983 33332 356788877777788888
Q ss_pred HHHHHHhhCCCCC-CCCHHHHHHHHHHHhc--CCceEEEeCCCCccC----ccChhhhHhhhcc-CCCCcEEEEEccchh
Q 042336 249 KAIIEALEGSAPN-LGELNSLLQHICLSIT--GKKFLLVLDDVWTED----YSKWEPFHNCLMN-CLHGSKILVTTRKET 320 (944)
Q Consensus 249 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~ 320 (944)
..++.+++...+. ..+.......+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8888877554322 2234555555655554 458999999995532 1223333333322 234566788887654
Q ss_pred hhhcccc-------cceEeCCCCChHHHHHHHHHHhcCCC-CCCCchhHHHHHHHHHHhhC---CChhhHHHHhhhhc--
Q 042336 321 VARMMES-------IDILIIKELSELECWSLFKRFAFFGR-SPFECKQLEEIGRKIVGKCK---GLPLAAKTIGSLLR-- 387 (944)
Q Consensus 321 v~~~~~~-------~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~~~---GlPlai~~~~~~l~-- 387 (944)
....+.. ...+.+.+++.++..+++...+.... .... ..+..+.+++.++ |.|..+..+.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL---PDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3322211 24799999999999999988642111 1111 1455666777777 99985443322211
Q ss_pred ----C--CCCHHHHHHHHhhhhhhhhhhccchhhHHHhhhhcChHHHHHHHhHhcccCC-C-ceecHHHHHHHH----HH
Q 042336 388 ----F--KRTTEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPSRIKRCFLYCAVFPK-N-YNIKKDELIKLW----AA 455 (944)
Q Consensus 388 ----~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~-~-~~i~~~~li~~w----~a 455 (944)
. .-+.+.+..++.... ...+.-++..+|++.+..+..++.+-+ + ..+....+.+.. -.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 114455544443211 234556677888888877776664221 1 123343332222 11
Q ss_pred cCCcccCCCchHHHHHHHHHHHHHhccCCccc
Q 042336 456 QGCIGTKGNKEMEMIGEEYFDYLATRSFFQEF 487 (944)
Q Consensus 456 eg~i~~~~~~~~e~~~~~~~~~L~~~~li~~~ 487 (944)
.| +.+. .......+++.|...+++...
T Consensus 322 ~g-~~~~----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LG-VEAV----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HT-CCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred cC-CCCC----CHHHHHHHHHHHHhCCCEEEE
Confidence 23 1111 124566789999999999764
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=5.8e-12 Score=125.35 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=42.0
Q ss_pred cCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCc
Q 042336 580 QFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLR 659 (944)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 659 (944)
.+++|+.|++++|. +..+| .+..+++|++|++++|.+..+| .+..+++|++|++++|......|..+..+++|+
T Consensus 42 ~l~~L~~L~l~~n~----i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANIN----VTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSC----CSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCC----ccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34455555555555 44444 3555555555555555444333 455555555555555542222444555555555
Q ss_pred eeecccccc
Q 042336 660 HLIFDVNFV 668 (944)
Q Consensus 660 ~L~l~~~~~ 668 (944)
+|++++|.+
T Consensus 116 ~L~Ls~n~i 124 (197)
T 4ezg_A 116 LLDISHSAH 124 (197)
T ss_dssp EEECCSSBC
T ss_pred EEEecCCcc
Confidence 555544433
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=7.1e-12 Score=124.68 Aligned_cols=142 Identities=17% Similarity=0.169 Sum_probs=113.1
Q ss_pred CceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccc-cchhhhccc
Q 042336 531 EELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYE-IPKEIQKLI 609 (944)
Q Consensus 531 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~-lp~~i~~l~ 609 (944)
..++++.+..+.+..++ .+..+++|++|.+.++.... ++ .+..+++|++|++++|. +.. .|..++.++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~-----~~-~l~~l~~L~~L~l~~n~----l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN-----YN-PISGLSNLERLRIMGKD----VTSDKIPNLSGLT 112 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC-----CG-GGTTCTTCCEEEEECTT----CBGGGSCCCTTCT
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc-----ch-hhhcCCCCCEEEeECCc----cCcccChhhcCCC
Confidence 45778888888777656 67788999999999885322 22 37788999999999988 443 677788899
Q ss_pred ccceeccCccccc-ccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCC
Q 042336 610 HLRYFKLHWLEIK-ELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 610 ~Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
+|++|++++|.+. ..|..++++++|++|++++|..+..+| .+..+++|++|++++|.+..++ .+..+++|+.|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE
Confidence 9999999999887 467788899999999999987677776 6888999999999888887776 677777777776
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=5.5e-13 Score=146.82 Aligned_cols=247 Identities=16% Similarity=0.135 Sum_probs=158.9
Q ss_pred hHHHHhhcCCcccEEEeccCCCcccccccc-----hhhhccc-ccceeccCccccccc-CccccCC-----CcccEEEec
Q 042336 573 VLQVLFNQFTCLRALKITRNSKENSIYEIP-----KEIQKLI-HLRYFKLHWLEIKEL-PDTCCEL-----FNLQTIEIE 640 (944)
Q Consensus 573 ~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-----~~i~~l~-~Lr~L~Ls~~~i~~l-P~~i~~L-----~~L~~L~L~ 640 (944)
.++.++...++|++|+|++|. +...+ ..+..++ +|++|+|++|.+... +..++.+ .+|++|+|+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNN----LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred HHHHHHhCCCCceEEEccCCC----CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 356666666779999999998 65554 6678888 899999999998754 5556664 899999999
Q ss_pred CccCCccc-Ccc----cccC-CCCceeecccccccccccc-----ccC-CCCCCcCCceEecccccCCCCcccccccCcC
Q 042336 641 GCYNLNRL-PQG----VGKL-VNLRHLIFDVNFVEYMPKG-----IER-LTCLRTLSEFVVVSRSDKYGNKACNLGGLRQ 708 (944)
Q Consensus 641 ~~~~l~~l-p~~----i~~L-~~L~~L~l~~~~~~~lp~~-----i~~-l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 708 (944)
+|. +... +.. +..+ ++|++|+++.|.+...+.. +.. .++|++|+ ...|...
T Consensus 89 ~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~----Ls~N~l~------------ 151 (362)
T 3goz_A 89 GNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN----LRGNDLG------------ 151 (362)
T ss_dssp SSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE----CTTSCGG------------
T ss_pred CCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE----ccCCcCC------------
Confidence 998 5543 333 4445 8999999988887765532 222 24566654 2221100
Q ss_pred cccCCceEEEcCccCcCChhhhhhhhcccCC-CcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCC-CCCceE
Q 042336 709 LNHLRGSLRIRGLRNVTDVHEAKIVELEKKK-NLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPP-PNLESL 786 (944)
Q Consensus 709 L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L 786 (944)
..........+...+ +|+.|++++|.+.+.. ...+...+... ++|+.|
T Consensus 152 ----------------~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--------------~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 152 ----------------IKSSDELIQILAAIPANVNSLNLRGNNLASKN--------------CAELAKFLASIPASVTSL 201 (362)
T ss_dssp ----------------GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--------------HHHHHHHHHTSCTTCCEE
T ss_pred ----------------HHHHHHHHHHHhcCCccccEeeecCCCCchhh--------------HHHHHHHHHhCCCCCCEE
Confidence 000112223344444 8999999998655431 22233444445 599999
Q ss_pred EEeeCCCCC-----CChhhhc-CCCccEEEeeccCCCCcCC-----CCCCCCCcceeeecccccceEeCccccCccCccC
Q 042336 787 DVWKYRGET-----LPSWIMS-LNKLKKLELSFCNKFEIMP-----PLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAF 855 (944)
Q Consensus 787 ~l~~~~~~~-----lp~~~~~-l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f 855 (944)
+|++|.... ++..+.. .++|+.|+|++|.....-+ .+..+++|+.|++++|. +..+...........|
T Consensus 202 ~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAF 280 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTS
T ss_pred ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHh
Confidence 999998655 4555555 4599999999997654321 25778899999998875 1111111111122356
Q ss_pred cccccccccccccccc
Q 042336 856 PKLKHLIFVDLDEWEE 871 (944)
Q Consensus 856 ~~L~~L~l~~l~~~~~ 871 (944)
+.++.|+..++.++..
T Consensus 281 ~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 281 PNIQKIILVDKNGKEI 296 (362)
T ss_dssp TTCCEEEEECTTSCBC
T ss_pred ccCCceEEEecCCCcC
Confidence 6777777777766653
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=6.4e-12 Score=144.75 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=117.9
Q ss_pred CCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCc
Q 042336 554 KKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFN 633 (944)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~ 633 (944)
.+|+.|++.++.... ++..+ +++|++|+|++|. +..+| +.+++|++|+|++|.+..+|. +++ +
T Consensus 59 ~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~----l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNA----LISLP---ELPASLEYLDACDNRLSTLPE-LPA--S 121 (571)
T ss_dssp TTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSC----CSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--T
T ss_pred CCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCC----Ccccc---cccCCCCEEEccCCCCCCcch-hhc--C
Confidence 366677776665321 11101 3567888888877 66676 456778888888888777777 655 7
Q ss_pred ccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCC
Q 042336 634 LQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLR 713 (944)
Q Consensus 634 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 713 (944)
|++|++++|. +..+|. .+++|++|++++|.+..+|. .+++|+.|. ...|...+ +
T Consensus 122 L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~----Ls~N~L~~--------------l- 175 (571)
T 3cvr_A 122 LKHLDVDNNQ-LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLS----VRNNQLTF--------------L- 175 (571)
T ss_dssp CCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEE----CCSSCCSC--------------C-
T ss_pred CCEEECCCCc-CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEE----CCCCCCCC--------------c-
Confidence 8888888876 666776 57778888887777777765 345566654 22211000 0
Q ss_pred ceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccC-CCCCCCceEEEeeCC
Q 042336 714 GSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEAL-RPPPNLESLDVWKYR 792 (944)
Q Consensus 714 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~ 792 (944)
. . +. ++|+.|+|+.|.+..... +...+ ..++.|+.|++++|.
T Consensus 176 -----------p-------~-l~--~~L~~L~Ls~N~L~~lp~----------------~~~~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 176 -----------P-------E-LP--ESLEALDVSTNLLESLPA----------------VPVRNHHSEETEIFFRCRENR 218 (571)
T ss_dssp -----------C-------C-CC--TTCCEEECCSSCCSSCCC----------------CC--------CCEEEECCSSC
T ss_pred -----------c-------h-hh--CCCCEEECcCCCCCchhh----------------HHHhhhcccccceEEecCCCc
Confidence 0 0 11 467777777775543200 00011 122334999999998
Q ss_pred CCCCChhhhcCCCccEEEeeccCCCCcCC
Q 042336 793 GETLPSWIMSLNKLKKLELSFCNKFEIMP 821 (944)
Q Consensus 793 ~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 821 (944)
...+|.++..+++|+.|+|++|...+.+|
T Consensus 219 l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 219 ITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 88899988889999999999988765443
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=1.9e-12 Score=154.99 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=94.8
Q ss_pred CceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccc
Q 042336 531 EELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIH 610 (944)
Q Consensus 531 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~ 610 (944)
..++++.+..+.....+..+....+|+.+.+.............+..+..++.|++|+|++|. +..+|..+.++.+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~----l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ----IFNISANIFKYDF 248 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSC----CSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC----CCCCChhhcCCCC
Confidence 456677776665554444444455555555444321110112345567888999999999998 7788888889999
Q ss_pred cceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccccccccccCCCCCCcCCceEec
Q 042336 611 LRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVV 690 (944)
Q Consensus 611 Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~ 690 (944)
|++|+|++|.|..+|..|++|.+|++|+|++|. +..+|..++.|++|++|+++.|.+..+|.+++.|++|+.|. .
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~----L 323 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG----V 323 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE----C
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe----C
Confidence 999999999999999889999999999999988 77889999999999999998888889998899999998887 4
Q ss_pred ccccCCC
Q 042336 691 SRSDKYG 697 (944)
Q Consensus 691 ~~~~~~~ 697 (944)
..|.+.+
T Consensus 324 ~~N~l~~ 330 (727)
T 4b8c_D 324 EGNPLEK 330 (727)
T ss_dssp TTSCCCS
T ss_pred CCCccCC
Confidence 5554443
No 118
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.27 E-value=1.3e-11 Score=128.06 Aligned_cols=140 Identities=22% Similarity=0.283 Sum_probs=105.2
Q ss_pred EEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccce
Q 042336 535 HSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRY 613 (944)
Q Consensus 535 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~ 613 (944)
++.+..+....+|..+. ++++.|.+.++.... ..+..|.++++|++|+|++|. +..++ ..+..+++|++
T Consensus 18 ~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLAT----LSDATFRGLTKLTWLNLDYNQ----LQTLSAGVFDDLTELGT 87 (251)
T ss_dssp EEECTTCCCSSCCSCCC--TTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSC----CCCCCTTTTTTCTTCCE
T ss_pred EEecCCCCccccCCCCC--CCCCEEEccCCCcCc----cCHhHhcCcccCCEEECCCCc----CCccCHhHhccCCcCCE
Confidence 45555555555555443 688899988877432 122337788899999999988 55544 45788999999
Q ss_pred eccCcccccccCc-cccCCCcccEEEecCccCCcccCcc-cccCCCCceeeccccccccccc-cccCCCCCCcCC
Q 042336 614 FKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLIFDVNFVEYMPK-GIERLTCLRTLS 685 (944)
Q Consensus 614 L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 685 (944)
|+|++|.+..+|. .+..+++|++|+|++|. +..+|.. +..+++|++|+++.|.+..+|. .++.+++|++|+
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 9999999887765 46888999999999987 7777765 5789999999998888888876 477788888776
No 119
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.23 E-value=8.5e-11 Score=121.65 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=119.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++||+.+++.+..++.... ....+.|+|++|+||||||+.+++.......+.. ..+.. ... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cHH-HHHHh
Confidence 468999999999999996432 2347899999999999999999874221111100 00000 000 00000
Q ss_pred HHhh-----CCCCCCCCHHHHHHHHHHH-----hcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhh-
Q 042336 253 EALE-----GSAPNLGELNSLLQHICLS-----ITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETV- 321 (944)
Q Consensus 253 ~~l~-----~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v- 321 (944)
.... .........+.. ..+.+. ..+++.+||+||++.-+...++.+...+.....+..+|+||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 000000111111 122222 2456899999999765556677777777766667889998876432
Q ss_pred hhc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhh
Q 042336 322 ARM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSL 385 (944)
Q Consensus 322 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~ 385 (944)
... ......+.+.+++.++..+++...+........ ++..+.|++.|+|+|..+..+...
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 111 122458999999999999999987654322122 456778999999999998877543
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.3e-11 Score=119.24 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=59.8
Q ss_pred CceEEEEEEeCCCC--cchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccc-cchhhhc
Q 042336 531 EELRHSMLVFGNEA--SFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYE-IPKEIQK 607 (944)
Q Consensus 531 ~~~r~lsl~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~-lp~~i~~ 607 (944)
..++++.+..+.+. .++..+..+++|+.|.+.++.... + ..+..+++|++|+|++|. +.. +|..+.+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----V-SNLPKLPKLKKLELSENR----IFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-----C-SSCCCCSSCCEEEEESCC----CCSCCCHHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-----h-hhhccCCCCCEEECcCCc----CchHHHHHHhh
Confidence 34444444444433 333334444555555555444221 1 124444555555555554 333 4444444
Q ss_pred ccccceeccCcccccccC--ccccCCCcccEEEecCccCCcccCc----ccccCCCCceeecccccccccc
Q 042336 608 LIHLRYFKLHWLEIKELP--DTCCELFNLQTIEIEGCYNLNRLPQ----GVGKLVNLRHLIFDVNFVEYMP 672 (944)
Q Consensus 608 l~~Lr~L~Ls~~~i~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~~~lp 672 (944)
+++|++|+|++|.+..+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++.|.+..+|
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 555555555555554443 344455555555555544 444443 3444555555555444444443
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=7.3e-13 Score=153.58 Aligned_cols=192 Identities=17% Similarity=0.098 Sum_probs=113.4
Q ss_pred hcCCcccEEEeccCCCcccccccchhhhcccccceeccCccc--------------ccccCccccCCCcccEEE-ecCcc
Q 042336 579 NQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLE--------------IKELPDTCCELFNLQTIE-IEGCY 643 (944)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~--------------i~~lP~~i~~L~~L~~L~-L~~~~ 643 (944)
..++.|+.|+|++|. +..+|..|++|.+|+.|+++++. ....|..+++|.+|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~n~----L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEK----STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCHHH----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCChhh----HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 445667777777776 66777777777777777776553 224455667777777777 44332
Q ss_pred CCcccCc------cccc--CCCCceeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCce
Q 042336 644 NLNRLPQ------GVGK--LVNLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGS 715 (944)
Q Consensus 644 ~l~~lp~------~i~~--L~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~ 715 (944)
+..++. .+.. ...|+.|++++|.+..+|. ++.+++|+.|. .+.|... .+
T Consensus 422 -~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~----Ls~N~l~--------------~l--- 478 (567)
T 1dce_A 422 -LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLD----LSHNRLR--------------AL--- 478 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEE----CCSSCCC--------------CC---
T ss_pred -cchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEee----cCccccc--------------cc---
Confidence 222221 1111 1247777777777777765 66666666665 2221110 00
Q ss_pred EEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCC
Q 042336 716 LRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGET 795 (944)
Q Consensus 716 l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 795 (944)
...+..+++|+.|+|+.|.+.+ ++ .+..+++|+.|+|++|....
T Consensus 479 ----------------p~~~~~l~~L~~L~Ls~N~l~~-------------------lp-~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 479 ----------------PPALAALRCLEVLQASDNALEN-------------------VD-GVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp ----------------CGGGGGCTTCCEEECCSSCCCC-------------------CG-GGTTCSSCCEEECCSSCCCS
T ss_pred ----------------chhhhcCCCCCEEECCCCCCCC-------------------Cc-ccCCCCCCcEEECCCCCCCC
Confidence 0123445566666676664442 12 45566777777777777666
Q ss_pred C--ChhhhcCCCccEEEeeccCCCCcCCCCC----CCCCcceee
Q 042336 796 L--PSWIMSLNKLKKLELSFCNKFEIMPPLG----KLPSLELLE 833 (944)
Q Consensus 796 l--p~~~~~l~~L~~L~L~~~~~~~~l~~l~----~l~~L~~L~ 833 (944)
+ |..+..+++|+.|+|++|.....+|... .+|+|+.|+
T Consensus 523 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6 7777788888888888877655444332 256666664
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=2e-11 Score=124.49 Aligned_cols=139 Identities=24% Similarity=0.358 Sum_probs=110.4
Q ss_pred EEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccch-hhhccccccee
Q 042336 536 SMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPK-EIQKLIHLRYF 614 (944)
Q Consensus 536 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~L 614 (944)
+....+....+|..+ .++|+.|.+.++.... ..+..|..+++|++|+|++|. +..+|. .+..+++|++|
T Consensus 24 v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~----l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI--PTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGSNQ----LGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEE
T ss_pred eEccCCCcCccCCCC--CCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCCCC----CCCcChhhcccCCCcCEE
Confidence 333344445455544 3889999999987532 123447889999999999998 777774 46889999999
Q ss_pred ccCcccccccCcc-ccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccccccc-ccCCCCCCcCC
Q 042336 615 KLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 615 ~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
+|++|.+..+|.. +..+.+|++|+|++|. +..+|..+..+++|++|+++.|.+..+|.. +..+++|+.|.
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 9999999988765 6889999999999998 889999999999999999999988888854 67778887775
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=2.7e-11 Score=126.41 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=79.9
Q ss_pred hhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccccCCC
Q 042336 578 FNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVGKLVN 657 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 657 (944)
+..+++|++|++++|. +..+| .++.+++|++|+|++|.+..+|. +.++++|++|++++|. +..+|.... ++
T Consensus 37 ~~~l~~L~~L~l~~n~----i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN----IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--AC 107 (263)
T ss_dssp HHHHTTCSEEECTTSC----CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SS
T ss_pred hhhcCcCcEEECcCCC----cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcccc--Cc
Confidence 5677889999999998 77777 68889999999999999988887 8999999999999987 777776433 89
Q ss_pred CceeeccccccccccccccCCCCCCcCC
Q 042336 658 LRHLIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 658 L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
|++|+++.|.+..+| .++.+++|+.|+
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILS 134 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEE
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEE
Confidence 999999888777765 466666666664
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=3.8e-11 Score=121.58 Aligned_cols=137 Identities=24% Similarity=0.319 Sum_probs=105.8
Q ss_pred EEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccceecc
Q 042336 538 LVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKL 616 (944)
Q Consensus 538 l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~L 616 (944)
...+.+..+|..+. ++|+.|.+.++.... ..+..|..+++|++|+|++|. +..+ |..+..+++|++|+|
T Consensus 18 c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~----i~~~~~~~l~~L~~L~Ls~N~----i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 18 CRGKGLTEIPTNLP--ETITEIRLEQNTIKV----IPPGAFSPYKKLRRIDLSNNQ----ISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp CTTSCCSSCCSSCC--TTCCEEECCSSCCCE----ECTTSSTTCTTCCEEECCSSC----CCEECTTTTTTCSSCCEEEC
T ss_pred cCCCCcCcCCCccC--cCCCEEECCCCcCCC----cCHhHhhCCCCCCEEECCCCc----CCCcCHHHhhCCcCCCEEEC
Confidence 33344444555443 689999998886432 122347888999999999998 6665 678899999999999
Q ss_pred CcccccccCcc-ccCCCcccEEEecCccCCccc-CcccccCCCCceeecccccccccccc-ccCCCCCCcCC
Q 042336 617 HWLEIKELPDT-CCELFNLQTIEIEGCYNLNRL-PQGVGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 617 s~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
++|.+..+|.. +..+.+|++|+|++|. +..+ |..+..+++|++|+++.|.+..+|.+ +..+++|+.|.
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 99999988876 5789999999999988 5555 56788999999999998888888765 77777777775
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=7.3e-11 Score=119.46 Aligned_cols=93 Identities=23% Similarity=0.349 Sum_probs=66.3
Q ss_pred cEEEeccCCCcccccccchhhhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCccc-CcccccCCCCceee
Q 042336 585 RALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRL-PQGVGKLVNLRHLI 662 (944)
Q Consensus 585 r~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 662 (944)
+.++++++. +..+|..+. .+|+.|+|++|.|..+|. .+..+.+|++|+|++|. +..+ |..+..+++|++|+
T Consensus 14 ~~v~c~~~~----l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKG----LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSC----CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCCC----cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEE
Confidence 567777777 677776654 578888888888887765 57888888888888887 5444 67788888888888
Q ss_pred cccccccccccc-ccCCCCCCcC
Q 042336 663 FDVNFVEYMPKG-IERLTCLRTL 684 (944)
Q Consensus 663 l~~~~~~~lp~~-i~~l~~L~~L 684 (944)
++.|.+..+|.+ +..+++|+.|
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcCCccCHhHccCCCCCCEE
Confidence 877777666654 2334333333
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=1.3e-11 Score=119.31 Aligned_cols=126 Identities=21% Similarity=0.200 Sum_probs=101.6
Q ss_pred cCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccc-cCcccc
Q 042336 551 FNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKE-LPDTCC 629 (944)
Q Consensus 551 ~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~-lP~~i~ 629 (944)
...++|+.|.+.++.... ..++..+..+++|++|++++|. +..+ ..++.+++|++|+|++|.+.. +|..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~----l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVG----LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp SCTTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSC----CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CCcccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCC----CCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 345889999999887430 1234446788999999999998 5555 678889999999999999886 777777
Q ss_pred CCCcccEEEecCccCCcccC--cccccCCCCceeeccccccccccc----cccCCCCCCcCC
Q 042336 630 ELFNLQTIEIEGCYNLNRLP--QGVGKLVNLRHLIFDVNFVEYMPK----GIERLTCLRTLS 685 (944)
Q Consensus 630 ~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~lp~----~i~~l~~L~~L~ 685 (944)
++++|++|++++|. +..+| ..+..+++|++|+++.|.+..+|. .+..+++|+.|+
T Consensus 93 ~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 93 KLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp HCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred hCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 89999999999987 77776 678899999999998888888876 678888888887
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.17 E-value=3.8e-10 Score=114.79 Aligned_cols=185 Identities=16% Similarity=0.063 Sum_probs=117.9
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCc-eeEEEEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFE-KRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 251 (944)
..++|++..++.+.+++.... ...+.|+|.+|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 468999999999999996432 22388999999999999999987311 11221 23344444433333222221
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhh-hhc-ccccc
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETV-ARM-MESID 329 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~-~~~~~ 329 (944)
..+..... ...+++.+||+||++.......+.+...+.....+.++|+||+.... ... .....
T Consensus 90 -~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 -KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp -HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111000 01367889999999765545566677777666677889998876431 111 12234
Q ss_pred eEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHh
Q 042336 330 ILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIG 383 (944)
Q Consensus 330 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 383 (944)
.+.+.+++.++..+++.+.+........ ++..+.|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999999999887643222112 4566778899999998655443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=1.7e-11 Score=119.51 Aligned_cols=126 Identities=20% Similarity=0.164 Sum_probs=100.3
Q ss_pred hccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccc
Q 042336 549 FMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTC 628 (944)
Q Consensus 549 ~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i 628 (944)
.+.++++|+.|.+.++.... ++.+....++|++|+|++|. +..+ ..++.+++|++|+|++|.+..+|..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~----l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNE----IRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSC----CCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred hcCCcCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCC----CCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 34567889999998886432 23323334489999999998 6666 56888999999999999999888665
Q ss_pred -cCCCcccEEEecCccCCcccCc--ccccCCCCceeecccccccccccc----ccCCCCCCcCC
Q 042336 629 -CELFNLQTIEIEGCYNLNRLPQ--GVGKLVNLRHLIFDVNFVEYMPKG----IERLTCLRTLS 685 (944)
Q Consensus 629 -~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~lp~~----i~~l~~L~~L~ 685 (944)
+.+++|++|++++|. +..+|. .+..+++|++|+++.|.+..+|.. ++.+++|+.|+
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence 889999999999987 788887 788899999999988888888875 77888888887
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.16 E-value=9.7e-11 Score=118.53 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=60.2
Q ss_pred cEEEeccCCCcccccccchhhhcccccceeccCcccccccCc--cccCCCcccEEEecCccCCcccCc-ccccCCCCcee
Q 042336 585 RALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPD--TCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHL 661 (944)
Q Consensus 585 r~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~--~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L 661 (944)
++++++++. +..+|..+.. .+++|+|++|.+..++. .+.++++|++|+|++|. +..+|. .+..+++|++|
T Consensus 14 ~~l~~s~n~----l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQK----LNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSC----CSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCCC----cccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEE
Confidence 577777777 6667765533 45778888888776632 36777888888887776 555544 57777777777
Q ss_pred ecccccccccccc-ccCCCCCCcC
Q 042336 662 IFDVNFVEYMPKG-IERLTCLRTL 684 (944)
Q Consensus 662 ~l~~~~~~~lp~~-i~~l~~L~~L 684 (944)
+++.|.+..+|.+ ++.+++|++|
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEE
Confidence 7777666555443 3333333333
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=8.9e-12 Score=117.76 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=82.3
Q ss_pred CCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccc-cCccccCC
Q 042336 553 AKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKE-LPDTCCEL 631 (944)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~-lP~~i~~L 631 (944)
.++|+.|.+.++.... ..++..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+.. +|..++++
T Consensus 16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~----l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVG----LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSC----CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCC----CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 4567777777665320 1123335667777777777776 4444 556777777777777777775 66666667
Q ss_pred CcccEEEecCccCCcccC--cccccCCCCceeeccccccccccc----cccCCCCCCcCC
Q 042336 632 FNLQTIEIEGCYNLNRLP--QGVGKLVNLRHLIFDVNFVEYMPK----GIERLTCLRTLS 685 (944)
Q Consensus 632 ~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~lp~----~i~~l~~L~~L~ 685 (944)
++|++|++++|. +..+| ..+..+++|++|+++.|.+..+|. .++.+++|+.|+
T Consensus 88 ~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 88 PNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 777777777776 55544 667777777777777777766664 466666666665
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=5.9e-11 Score=119.26 Aligned_cols=123 Identities=25% Similarity=0.431 Sum_probs=71.0
Q ss_pred CCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchh-hhcccccceeccCcccccccCcc-ccCC
Q 042336 554 KKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKE-IQKLIHLRYFKLHWLEIKELPDT-CCEL 631 (944)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~lP~~-i~~L 631 (944)
++|+.|.+.++.... ..+..|..+++|++|++++|. +..+|.. +..+++|++|+|++|.+..+|.. +.++
T Consensus 28 ~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS----LPNGVFDELTSLTQLYLGGNK----LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp TTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEcCCCccCc----CChhhhcccccCcEEECCCCc----cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 466666666654321 112234566666666666665 4454433 45666666666666666655544 4666
Q ss_pred CcccEEEecCccCCcccCcc-cccCCCCceeecccccccccccc-ccCCCCCCcCC
Q 042336 632 FNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 632 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
++|++|++++|. +..+|.. +..+++|++|+++.|.+..+|.. +..+++|+.|+
T Consensus 100 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 100 TQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 666666666665 4455443 45666666666666666655544 45566666554
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=117.70 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=104.7
Q ss_pred EEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccch-hhhcccccce
Q 042336 535 HSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPK-EIQKLIHLRY 613 (944)
Q Consensus 535 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~ 613 (944)
.+.+..+.+..+|..+ .+.++.|.+.++...... ....|..+++|++|+|++|. +..++. .++.+.+|++
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~---~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLE---ATGIFKKLPQLRKINFSNNK----ITDIEEGAFEGASGVNE 85 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEEC---CCCCGGGCTTCCEEECCSSC----CCEECTTTTTTCTTCCE
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccC---chhhhccCCCCCEEECCCCc----CCEECHHHhCCCCCCCE
Confidence 4555555555555543 345688888887643210 11236788899999999988 666654 7888999999
Q ss_pred eccCcccccccCcc-ccCCCcccEEEecCccCCccc-CcccccCCCCceeeccccccccc-cccccCCCCCCcCC
Q 042336 614 FKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRL-PQGVGKLVNLRHLIFDVNFVEYM-PKGIERLTCLRTLS 685 (944)
Q Consensus 614 L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 685 (944)
|+|++|.+..+|.. +.++++|++|+|++|. +..+ |..+..+++|++|+++.|.+..+ |..+..+++|+.|.
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 99999998877654 8889999999999988 5554 67788899999999988888877 55677788887775
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=8.6e-11 Score=129.04 Aligned_cols=173 Identities=18% Similarity=0.154 Sum_probs=106.7
Q ss_pred cEEEeccCCCcccccccchhhhcccccceeccCcccccccCcc-cc-CCCcccEEEecCccCCcccC-cccccCCCCcee
Q 042336 585 RALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDT-CC-ELFNLQTIEIEGCYNLNRLP-QGVGKLVNLRHL 661 (944)
Q Consensus 585 r~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~-i~-~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L 661 (944)
++++++++. +..+|..+. ..|++|+|++|.+..+|.. +. ++.+|++|+|++|. +..+| ..+..+++|++|
T Consensus 21 ~~l~c~~~~----l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQ----LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSC----CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCC----cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEE
Confidence 567777776 666776554 3477888888888777655 44 78888888888876 66555 457788888888
Q ss_pred ecccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCC
Q 042336 662 IFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKN 740 (944)
Q Consensus 662 ~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~ 740 (944)
+++.|.+..+|.. +..+++|+.|. ...|.+.. + ....+..+++
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~----L~~N~i~~------------------~--------------~~~~~~~l~~ 137 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLL----LYNNHIVV------------------V--------------DRNAFEDMAQ 137 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEE----CCSSCCCE------------------E--------------CTTTTTTCTT
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEE----CCCCcccE------------------E--------------CHHHhCCccc
Confidence 8877777776653 56666666665 22211000 0 0022445567
Q ss_pred cCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCCCh-hhhcCCC--ccEEEeeccC
Q 042336 741 LLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETLPS-WIMSLNK--LKKLELSFCN 815 (944)
Q Consensus 741 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~--L~~L~L~~~~ 815 (944)
|+.|+|+.|.+.... ...+..+..+++|+.|+|++|....+|. .+..+++ |+.|+|.+|+
T Consensus 138 L~~L~L~~N~l~~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 138 LQKLYLSQNQISRFP---------------VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCEEECCSSCCCSCC---------------GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCEEECCCCcCCeeC---------------HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 777888777655421 0112222456778888888887777763 3455655 3677777765
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=3.3e-10 Score=113.73 Aligned_cols=129 Identities=21% Similarity=0.315 Sum_probs=81.6
Q ss_pred CCceEEEEEEeCCCCcchh-hccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchh-hhc
Q 042336 530 EEELRHSMLVFGNEASFPV-FMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKE-IQK 607 (944)
Q Consensus 530 ~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~-i~~ 607 (944)
+..++++.+..+.+..++. .+..+++|++|.+.++.... ..+..|..+++|++|+|++|. +..+|.. ++.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS----LPNGVFNKLTSLTYLNLSTNQ----LQSLPNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc----cChhhcCCCCCcCEEECCCCc----CCccCHhHhcC
Confidence 3456677776666655443 24567777777777665321 112235667777777777776 5555543 567
Q ss_pred ccccceeccCcccccccCcc-ccCCCcccEEEecCccCCcccCcc-cccCCCCceeeccccc
Q 042336 608 LIHLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLIFDVNF 667 (944)
Q Consensus 608 l~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 667 (944)
+++|++|+|++|.+..+|.. +.++++|++|++++|. +..+|.. +..+++|++|+++.|.
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 77777777777777766654 5677777777777776 5555544 5667777777776653
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.08 E-value=2.3e-10 Score=116.67 Aligned_cols=99 Identities=30% Similarity=0.436 Sum_probs=88.2
Q ss_pred CcccEEEeccCCCccccccc-chhhhcccccceeccCcccccccCcc-ccCCCcccEEEecCccCCcccCcc-cccCCCC
Q 042336 582 TCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQG-VGKLVNL 658 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L 658 (944)
++|++|+|++|. +..+ |..+..+++|++|+|++|.+..+|.. +..+.+|++|+|++|. +..+|.. +..+++|
T Consensus 40 ~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQ----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCCc----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhh
Confidence 789999999998 6665 67789999999999999999988865 6899999999999997 7777765 6899999
Q ss_pred ceeeccccccccccccccCCCCCCcCC
Q 042336 659 RHLIFDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
++|++++|.+..+|..+..+++|+.|+
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLA 141 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEE
T ss_pred CeEeccCCcccccCcccccCCCCCEEE
Confidence 999999999999999999999999886
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=4.8e-11 Score=112.66 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=89.2
Q ss_pred hcCCcccEEEeccCCCccccc--ccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcc-cCcccccC
Q 042336 579 NQFTCLRALKITRNSKENSIY--EIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNR-LPQGVGKL 655 (944)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~--~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L 655 (944)
...++|+.|++++|. +. .+|..++.+++|++|++++|.+..+ ..++++++|++|++++|. +.. +|..+..+
T Consensus 14 ~~~~~l~~L~l~~n~----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l 87 (149)
T 2je0_A 14 RTPSDVKELVLDNSR----SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKC 87 (149)
T ss_dssp CCGGGCSEEECTTCB----CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHC
T ss_pred CCCccCeEEEccCCc----CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhC
Confidence 455789999999998 65 7888889999999999999999888 789999999999999998 555 88888889
Q ss_pred CCCceeecccccccccc--ccccCCCCCCcCC
Q 042336 656 VNLRHLIFDVNFVEYMP--KGIERLTCLRTLS 685 (944)
Q Consensus 656 ~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~ 685 (944)
++|++|+++.|.+..+| ..++.+++|++|+
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 99999999999888865 6788888888886
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=2.1e-10 Score=132.95 Aligned_cols=118 Identities=18% Similarity=0.168 Sum_probs=90.9
Q ss_pred CeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcc
Q 042336 555 KLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNL 634 (944)
Q Consensus 555 ~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L 634 (944)
.|+.|.+.++.... ++. +..+++|++|+|++|. +..+|..++++++|++|+|++|.+..+| .+++|++|
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~----l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNR----LRALPPALAALRCLEVLQASDNALENVD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSC----CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSC
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCccc----ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCC
Confidence 36777777765422 333 6778888888888888 6788888888888888888888888888 78888888
Q ss_pred cEEEecCccCCccc--CcccccCCCCceeeccccccccccccccC----CCCCCcC
Q 042336 635 QTIEIEGCYNLNRL--PQGVGKLVNLRHLIFDVNFVEYMPKGIER----LTCLRTL 684 (944)
Q Consensus 635 ~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~----l~~L~~L 684 (944)
++|+|++|. +..+ |..++.|++|++|++++|.+..+|+.+.. +++|+.|
T Consensus 511 ~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 511 QELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 888888887 6666 78888888888888888888777765432 4555544
No 138
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.02 E-value=1.2e-09 Score=118.08 Aligned_cols=267 Identities=15% Similarity=0.075 Sum_probs=145.6
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++|++..++.+..++..... .......+.|+|++|+|||++|+.+++. ... ..++++++......++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l----- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDL----- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHH-----
Confidence 4699999999988888753211 0113356889999999999999999873 222 2234444332222211
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC------------------CCcEEEE
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL------------------HGSKILV 314 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 314 (944)
...+... ..++.+|+|||+..........+...+.... ++.++|.
T Consensus 81 ----------------~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 81 ----------------AAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ----------------HHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ----------------HHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1111111 1356789999996544334444554444321 2356776
Q ss_pred Eccchh-hhhcc-cc-cceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhhhcC---
Q 042336 315 TTRKET-VARMM-ES-IDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSLLRF--- 388 (944)
Q Consensus 315 Ttr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~--- 388 (944)
||.... +...+ .. ...+.+.+++.++...++...+........ ++..+.+++.++|.|..+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 665432 21111 11 257899999999999999887654332222 456778999999999887766543321
Q ss_pred ---C--CCHHHHHHHHhhhhhhhhhhccchhhHHHhhhhcChHHHHHHHhHhc-ccCCC----------ceecHHHHH--
Q 042336 389 ---K--RTTEEWQNILDSEMWQLEEFEKDLLAPLLLSYTDLPSRIKRCFLYCA-VFPKN----------YNIKKDELI-- 450 (944)
Q Consensus 389 ---~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~-~fp~~----------~~i~~~~li-- 450 (944)
. -+.+....+.... ...+..++...+..+..+. .|..+ ..+++..+.
T Consensus 220 ~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 1333333333221 1122233333333333222 11111 012333332
Q ss_pred --HHHHHcCCcccC-CCchHHHHHHHHHH-HHHhccCCcc
Q 042336 451 --KLWAAQGCIGTK-GNKEMEMIGEEYFD-YLATRSFFQE 486 (944)
Q Consensus 451 --~~w~aeg~i~~~-~~~~~e~~~~~~~~-~L~~~~li~~ 486 (944)
++-+..|+|... .+....+.|.+||+ ++.+|+|||+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 345668888643 45667788999997 8999999885
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.00 E-value=1.8e-10 Score=137.99 Aligned_cols=117 Identities=24% Similarity=0.289 Sum_probs=97.7
Q ss_pred chhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccC
Q 042336 546 FPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELP 625 (944)
Q Consensus 546 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP 625 (944)
.+..+..+++|+.|++.++.... ++..+.++++|++|+|++|. +..+|..|++|.+|++|+|++|.|..+|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~----l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 286 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNS----LTELPAEIKNLSNLRVLDLSHNRLTSLP 286 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSC----CSCCCGGGGGGTTCCEEECTTSCCSSCC
T ss_pred ChhhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCc----CcccChhhhCCCCCCEEeCcCCcCCccC
Confidence 34567788999999999987532 22224589999999999998 7789999999999999999999999999
Q ss_pred ccccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccccc
Q 042336 626 DTCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMP 672 (944)
Q Consensus 626 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp 672 (944)
..|++|.+|++|+|++|. +..+|..|++|++|++|+++.|.+...+
T Consensus 287 ~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp SSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred hhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCC
Confidence 999999999999999997 8899999999999999999888877543
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=2.3e-10 Score=111.32 Aligned_cols=131 Identities=18% Similarity=0.080 Sum_probs=107.7
Q ss_pred CCCceEEEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhh-hc
Q 042336 529 SEEELRHSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEI-QK 607 (944)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i-~~ 607 (944)
....++.+.+..+.+..++......++|+.|++.++.... + ..+..+++|++|+|++|. +..+|..+ +.
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~----l~~~~~~~~~~ 86 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNR----ICRIGEGLDQA 86 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSC----CCEECSCHHHH
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCc----ccccCcchhhc
Confidence 4567888888888877654433334499999999987543 2 237889999999999999 77887655 89
Q ss_pred ccccceeccCcccccccCc--cccCCCcccEEEecCccCCcccCcc----cccCCCCceeecccccccc
Q 042336 608 LIHLRYFKLHWLEIKELPD--TCCELFNLQTIEIEGCYNLNRLPQG----VGKLVNLRHLIFDVNFVEY 670 (944)
Q Consensus 608 l~~Lr~L~Ls~~~i~~lP~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~ 670 (944)
+++|++|+|++|.+..+|. .++.+++|++|++++|. +..+|.. +..+++|+.|+++.+....
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999999999997 89999999999999998 7788885 8999999999997765443
No 141
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.99 E-value=5.5e-10 Score=122.57 Aligned_cols=140 Identities=15% Similarity=0.173 Sum_probs=98.7
Q ss_pred EEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhh-cCCcccEEEeccCCCcccccccc-hhhhcccccc
Q 042336 535 HSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFN-QFTCLRALKITRNSKENSIYEIP-KEIQKLIHLR 612 (944)
Q Consensus 535 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~-~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr 612 (944)
.+....+.+..+|..+ .+.++.|++.++.... ..+..|. ++++|++|+|++|. +..++ ..+.++++|+
T Consensus 22 ~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~----l~~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSR----LRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFVPVPNLR 91 (361)
T ss_dssp EEECCSSCCSSCCSSC--CTTCSEEECCSSCCCE----ECTTSSSSCCTTCCEEECCSSC----CCEECTTTTTTCTTCC
T ss_pred EEEeCCCCcCccCccC--CCCCCEEECCCCCCCc----cChhhhhhcccccCEEECCCCc----CCccChhhccCCCCCC
Confidence 3444445555555443 3567888888876432 1122355 78888888888888 66665 4688888888
Q ss_pred eeccCcccccccCc-cccCCCcccEEEecCccCCccc-CcccccCCCCceeeccccccccccccc----cCCCCCCcCC
Q 042336 613 YFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRL-PQGVGKLVNLRHLIFDVNFVEYMPKGI----ERLTCLRTLS 685 (944)
Q Consensus 613 ~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~lp~~i----~~l~~L~~L~ 685 (944)
+|+|++|.+..+|. .+.++.+|++|+|++|. +..+ |..+..+++|++|+++.|.+..+|..+ ..+++|+.|+
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 88888888887765 47888888888888887 5544 567888888888888888888887664 4566666665
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=1.9e-11 Score=121.66 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=76.7
Q ss_pred cchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCccccccc
Q 042336 545 SFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKEL 624 (944)
Q Consensus 545 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~l 624 (944)
.++..+..+++|+.|++.++.... ++ .+..+++|++|++++|. +..+|..++.+++|++|++++|.+..+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~----l~~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNL----IKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEE----ECSCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCC----cccccchhhcCCcCCEEECcCCcCCcC
Confidence 344466667777777777665322 22 35666777777777776 666776666777777777777777776
Q ss_pred CccccCCCcccEEEecCccCCcccCc--ccccCCCCceeeccccccccc
Q 042336 625 PDTCCELFNLQTIEIEGCYNLNRLPQ--GVGKLVNLRHLIFDVNFVEYM 671 (944)
Q Consensus 625 P~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~l 671 (944)
| .++++++|++|++++|. +..+|. .+..+++|++|++++|.+...
T Consensus 109 ~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp H-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred C-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 6 56777777777777776 555543 566777777777766655443
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=3.6e-09 Score=114.29 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=116.2
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccC-ceeEEEEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNF-EKRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 251 (944)
..++|++..++.+.+++.... ...+.|+|++|+||||+|+.+++... ...+ ...++++.+....... ++.+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 468999999999999986432 22388999999999999999987311 1112 1234444443323222 2222
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHh-cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh-hhhc-cccc
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSI-TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET-VARM-MESI 328 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 328 (944)
++.+.... ..+ .+++.+||+||++.-....++.+...+.....++++|+||+... +... ....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22221000 011 35688999999976544556667777766666788888886543 1111 1223
Q ss_pred ceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhH-HHH
Q 042336 329 DILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAA-KTI 382 (944)
Q Consensus 329 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai-~~~ 382 (944)
..+.+.+++.++..+++...+...+.... ++..+.|++.++|.|..+ ..+
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 58999999999999999887542221112 456678999999999554 444
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=2.4e-11 Score=120.95 Aligned_cols=105 Identities=23% Similarity=0.282 Sum_probs=90.8
Q ss_pred HHHHhhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccCcccc
Q 042336 574 LQVLFNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQGVG 653 (944)
Q Consensus 574 l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 653 (944)
++..+..+++|++|+|++|. +..+| .++.+++|++|++++|.+..+|..++.+++|++|++++|. +..+| .+.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~----l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~ 112 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN----IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIE 112 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE----ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHH
T ss_pred hhHHHhcCCCCCEEECCCCC----Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccc
Confidence 45568899999999999998 77788 8999999999999999999999888888999999999997 77787 688
Q ss_pred cCCCCceeeccccccccccc--cccCCCCCCcCC
Q 042336 654 KLVNLRHLIFDVNFVEYMPK--GIERLTCLRTLS 685 (944)
Q Consensus 654 ~L~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~ 685 (944)
.+++|++|+++.|.+..+|. .+..+++|+.|.
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 99999999998888887664 577777777775
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=9.5e-10 Score=108.59 Aligned_cols=126 Identities=21% Similarity=0.218 Sum_probs=75.4
Q ss_pred EEEEEeCCCCcchhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chhhhcccccce
Q 042336 535 HSMLVFGNEASFPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKEIQKLIHLRY 613 (944)
Q Consensus 535 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~ 613 (944)
.+.+..+.+..+|..+. .+|+.|.+.++....... ...|..+++|++|+|++|. +..+ |..++.+++|++
T Consensus 12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~---~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQ----LTGIEPNAFEGASHIQE 82 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCC---SCSGGGCTTCCEEECCSSC----CCCBCTTTTTTCTTCCE
T ss_pred EEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCC---ccccccCCCCCEEECCCCC----CCCcCHhHcCCcccCCE
Confidence 34444444444454332 367777777665322110 0125667777777777776 4444 566777777777
Q ss_pred eccCcccccccCcc-ccCCCcccEEEecCccCCcccCcccccCCCCceeeccccccc
Q 042336 614 FKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVE 669 (944)
Q Consensus 614 L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 669 (944)
|+|++|.+..+|.. +.++++|++|+|++|......|..+..+++|++|+++.|.+.
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77777777655543 667777777777777633334566677777777777666543
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=2.7e-09 Score=105.26 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=49.8
Q ss_pred cccEEEeccCCCcccccccchhhhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCcccCc-ccccCCCCce
Q 042336 583 CLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRH 660 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~ 660 (944)
.|++|+|++|. +..+|..+..+.+|++|+|++|.|..+|. .+.++.+|++|+|++|. +..+|. .+..+++|++
T Consensus 32 ~l~~L~L~~n~----i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 32 DVTELYLDGNQ----FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp TCCEEECCSSC----CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCc----CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCE
Confidence 45555555555 44555555555555555555555554442 35555555555555554 333332 3555555555
Q ss_pred eecccccccccccc-ccCCCCCCcC
Q 042336 661 LIFDVNFVEYMPKG-IERLTCLRTL 684 (944)
Q Consensus 661 L~l~~~~~~~lp~~-i~~l~~L~~L 684 (944)
|+++.|.+..+|.+ +..+++|+.|
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 107 LSLHGNDISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred EECCCCCCCeeChhhhhcCccccEE
Confidence 55555555555443 4444444444
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=2.6e-09 Score=105.39 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=37.9
Q ss_pred cccEEEeccCCCcccccccchh--hhcccccceeccCccccccc-CccccCCCcccEEEecCccCCcccCc-ccccCCCC
Q 042336 583 CLRALKITRNSKENSIYEIPKE--IQKLIHLRYFKLHWLEIKEL-PDTCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNL 658 (944)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~lp~~--i~~l~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L 658 (944)
.|++|++++|. +..++.. ++.+++|++|+|++|.+..+ |..++++.+|++|+|++|. +..+|. .+..+++|
T Consensus 30 ~l~~L~l~~n~----i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDNE----LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQL 104 (192)
T ss_dssp TCSEEECCSCC----CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTC
T ss_pred CCCEEECCCCc----CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCC
Confidence 44555555544 3333321 44455555555555554433 3344455555555555544 333322 24445555
Q ss_pred ceeecccccccc
Q 042336 659 RHLIFDVNFVEY 670 (944)
Q Consensus 659 ~~L~l~~~~~~~ 670 (944)
++|+++.|.+..
T Consensus 105 ~~L~L~~N~l~~ 116 (192)
T 1w8a_A 105 KTLNLYDNQISC 116 (192)
T ss_dssp CEEECCSSCCCE
T ss_pred CEEECCCCcCCe
Confidence 555554444443
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=3.2e-09 Score=103.37 Aligned_cols=107 Identities=21% Similarity=0.396 Sum_probs=66.1
Q ss_pred CCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccchh-hhcccccceeccCcccccccCcc-ccCC
Q 042336 554 KKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIPKE-IQKLIHLRYFKLHWLEIKELPDT-CCEL 631 (944)
Q Consensus 554 ~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~lP~~-i~~L 631 (944)
++|+.|.+.++.... ..+..|..+++|++|++++|. +..+|.. ++.+++|++|+|++|.+..+|.. +.++
T Consensus 28 ~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 28 SSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQ----IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp TTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCc----ceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 567777776665321 112235666777777777766 5555533 46677777777777777666554 4667
Q ss_pred CcccEEEecCccCCcccCcc-cccCCCCceeeccccccc
Q 042336 632 FNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLIFDVNFVE 669 (944)
Q Consensus 632 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 669 (944)
++|++|++++|. +..+|.. +..+++|++|+++.|.+.
T Consensus 100 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 100 TQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 777777777765 5566554 356777777777665544
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=1.5e-08 Score=109.65 Aligned_cols=286 Identities=12% Similarity=0.061 Sum_probs=144.9
Q ss_pred CCCeeEEEEecCCcccccchhHHHHhhc-CCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCc-cccC
Q 042336 553 AKKLRSLLIHNIPIEVSSSPVLQVLFNQ-FTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPD-TCCE 630 (944)
Q Consensus 553 ~~~Lr~L~l~~~~~~~~~~~~l~~~~~~-~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~ 630 (944)
..+++.|.+.+.-. ...+.. +.. +++|++|||++|. +......-+.++.++++.+..+. +|+ .+.+
T Consensus 24 ~~~l~~L~l~g~i~----~~~~~~-l~~~l~~L~~LdLs~n~----i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLTGKLN----AEDFRH-LRDEFPSLKVLDISNAE----IKMYSGKAGTYPNGKFYIYMANF---VPAYAFSN 91 (329)
T ss_dssp HHHCSEEEEEEEEC----HHHHHH-HHHSCTTCCEEEEEEEE----ECCEEESSSSSGGGCCEEECTTE---ECTTTTEE
T ss_pred hCceeEEEEecccc----HHHHHH-HHHhhccCeEEecCcce----eEEecCccccccccccccccccc---cCHHHhcc
Confidence 56788888876421 122333 344 8899999999998 54111111223334555555553 333 2555
Q ss_pred --------CCcccEEEecCccCCcccCc-ccccCCCCceeecccccccccccc-ccCCCCCCcCCceEecccccCCCCcc
Q 042336 631 --------LFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKA 700 (944)
Q Consensus 631 --------L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~ 700 (944)
+.+|+.|+|.. . +..++. .+..|++|+.|++..|.+..++.. +..+.++..+..-.............
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred cccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc
Confidence 88999999988 4 666665 478889999999987777666654 44444443332100000000000001
Q ss_pred cccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcC-cEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCC
Q 042336 701 CNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLL-HLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRP 779 (944)
Q Consensus 701 ~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 779 (944)
..+.++ ..|+ .+.+... .. ....+...-..
T Consensus 170 ~~f~~~--------------------------------~~L~~~i~~~~~--~~---------------l~~~~~~~~~~ 200 (329)
T 3sb4_A 170 FAFIEG--------------------------------EPLETTIQVGAM--GK---------------LEDEIMKAGLQ 200 (329)
T ss_dssp SCEEES--------------------------------CCCEEEEEECTT--CC---------------HHHHHHHTTCC
T ss_pred cccccc--------------------------------cccceeEEecCC--Cc---------------HHHHHhhcccC
Confidence 111122 2222 1111110 00 01111222223
Q ss_pred CCCCceEEEeeCCCCCCChhh-hcCCCccEEEeeccCCCCcCCC--CCCCCCcceeeecccccceEeCccccCccCccCc
Q 042336 780 PPNLESLDVWKYRGETLPSWI-MSLNKLKKLELSFCNKFEIMPP--LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFP 856 (944)
Q Consensus 780 ~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~ 856 (944)
+.+++.+.+.+.....-...+ ..+++|+.|+|.+|... .++. +..+++|+.|.+.+. ++.++. ..|.
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n--i~~I~~-------~aF~ 270 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN--LKTIGQ-------RVFS 270 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT--CCEECT-------TTTT
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc--cceehH-------HHhh
Confidence 345555555554211101111 13666777777665433 3333 666777777776542 333332 3455
Q ss_pred cccccc-cccccccccccccCCccccCcccceeeecccccccCCCC-CCCCCCCcCeEE
Q 042336 857 KLKHLI-FVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPH-QILGNTTLQMLK 913 (944)
Q Consensus 857 ~L~~L~-l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 913 (944)
.+..|+ ...+++ ......+..+..+++|+.|++..+ .++.++. .+.++++|+.|+
T Consensus 271 ~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 271 NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 555555 555554 222333455667888999988765 3666664 466788888775
No 150
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.85 E-value=5.1e-09 Score=103.27 Aligned_cols=94 Identities=20% Similarity=0.321 Sum_probs=82.4
Q ss_pred cEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCccCCcccC-cccccCCCCceeec
Q 042336 585 RALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLP-QGVGKLVNLRHLIF 663 (944)
Q Consensus 585 r~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 663 (944)
++++++++. +..+|..+. .+|++|+|++|.+..+|..+.++.+|++|+|++|. +..++ ..+..+++|++|++
T Consensus 13 ~~l~~~~~~----l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKG----LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSC----CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC----CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEEC
Confidence 688999888 788887664 58999999999999999999999999999999998 66665 46899999999999
Q ss_pred cccccccccc-cccCCCCCCcCC
Q 042336 664 DVNFVEYMPK-GIERLTCLRTLS 685 (944)
Q Consensus 664 ~~~~~~~lp~-~i~~l~~L~~L~ 685 (944)
+.|.+..+|. .+..+++|+.|+
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEE
Confidence 9999998876 478888888886
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=4.9e-09 Score=113.40 Aligned_cols=268 Identities=14% Similarity=0.113 Sum_probs=148.8
Q ss_pred cCCcccEEEeccCCCcccccccchhhhc-ccccceeccCcccccccCccccCCCcccEEEecCccCCcccCc-cccc---
Q 042336 580 QFTCLRALKITRNSKENSIYEIPKEIQK-LIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCYNLNRLPQ-GVGK--- 654 (944)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~lp~~i~~-l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~--- 654 (944)
.+.+|+.|.++++-. ..-...+.. +.+|++|||++|.|......-+.+..+..+.+..+ .+|. .+..
T Consensus 23 ~~~~l~~L~l~g~i~----~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~ 94 (329)
T 3sb4_A 23 EANSITHLTLTGKLN----AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVN 94 (329)
T ss_dssp HHHHCSEEEEEEEEC----HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEET
T ss_pred hhCceeEEEEecccc----HHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccc
Confidence 345788899987631 111233444 78899999999998722212233344566666554 2333 4566
Q ss_pred -----CCCCceeecccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChh
Q 042336 655 -----LVNLRHLIFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVH 728 (944)
Q Consensus 655 -----L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~ 728 (944)
+++|+.|++.. .+..++.+ +..+++|+.+. ...+.........+..+.++..+. .. .
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~----l~~n~i~~i~~~aF~~~~~l~~l~----~~------~-- 157 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ----IRKKTAPNLLPEALADSVTAIFIP----LG------S-- 157 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE----BCCSSCCEECTTSSCTTTCEEEEC----TT------C--
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEE----cCCCCccccchhhhcCCCceEEec----Cc------c--
Confidence 89999999976 67777765 77888888776 222222111112222222221110 00 0
Q ss_pred hhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCc-eEEEeeCCCCCCChhhh----cC
Q 042336 729 EAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLE-SLDVWKYRGETLPSWIM----SL 803 (944)
Q Consensus 729 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~lp~~~~----~l 803 (944)
.........+.. ..+..+.+|+ .+.+... ..++..+. ..
T Consensus 158 ---~~~~~~~~~i~~-------------------------------~~f~~~~~L~~~i~~~~~--~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 158 ---SDAYRFKNRWEH-------------------------------FAFIEGEPLETTIQVGAM--GKLEDEIMKAGLQP 201 (329)
T ss_dssp ---THHHHTSTTTTT-------------------------------SCEEESCCCEEEEEECTT--CCHHHHHHHTTCCG
T ss_pred ---hhhhhccccccc-------------------------------cccccccccceeEEecCC--CcHHHHHhhcccCc
Confidence 000000000111 1122234555 3444322 23333322 35
Q ss_pred CCccEEEeeccCCCCcCCCC-CCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccC
Q 042336 804 NKLKKLELSFCNKFEIMPPL-GKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIM 882 (944)
Q Consensus 804 ~~L~~L~L~~~~~~~~l~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l 882 (944)
.++..+.+.+.........+ ..+++|+.|+|.++. ++.++. ..|..+..|+...++++ .....+..+..+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~-------~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~ 272 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPD-------FTFAQKKYLLKIKLPHN-LKTIGQRVFSNC 272 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECT-------TTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecH-------hhhhCCCCCCEEECCcc-cceehHHHhhCC
Confidence 67888888775322222111 136899999998654 444433 35666777777777664 333445567789
Q ss_pred cccc-eeeecccccccCCC-CCCCCCCCcCeEEEecCcc
Q 042336 883 PQLN-SLEIRDCHKLKSLP-HQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 883 ~~L~-~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~ 919 (944)
++|+ .|.+.+ .++.++ ..+.+|++|+.|++.++..
T Consensus 273 ~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 273 GRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp TTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred hhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCcc
Confidence 9999 999987 577776 4577899999999977654
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=7.2e-09 Score=100.22 Aligned_cols=87 Identities=20% Similarity=0.324 Sum_probs=52.2
Q ss_pred CcccEEEeccCCCccccccc-chhhhcccccceeccCcccccccCcc-ccCCCcccEEEecCccCCcccCcc-cccCCCC
Q 042336 582 TCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQG-VGKLVNL 658 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L 658 (944)
++|++|+|++|. +..+ |..++++++|++|+|++|.+..+|.. +.++.+|++|+|++|. +..+|.. +..+++|
T Consensus 33 ~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQ----ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCC----ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCC
Confidence 556666666666 4444 44556666666666666666666554 3566666666666665 5555554 5666666
Q ss_pred ceeeccccccccccc
Q 042336 659 RHLIFDVNFVEYMPK 673 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~ 673 (944)
++|+++.|.+...|.
T Consensus 108 ~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 108 THIYLYNNPWDCECR 122 (174)
T ss_dssp SEEECCSSCBCTTBG
T ss_pred CEEEeCCCCcccccc
Confidence 666666665554443
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=2.3e-08 Score=108.13 Aligned_cols=186 Identities=13% Similarity=0.103 Sum_probs=116.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccccc-C-ceeEEEEeCCCCCHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINN-F-EKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~~~~~ 250 (944)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++. .... + ...+.+..+...... .++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIRE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHH
Confidence 45899999999999998643 2233889999999999999999873 2111 1 122333333211111 1111
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhh-hhcc-ccc
Q 042336 251 IIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETV-ARMM-ESI 328 (944)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~-~~~ 328 (944)
.+..+.... ....+++.++|+||++.-....++.+...+.....++++|+||..... .... ...
T Consensus 96 ~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 96 KVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 111110000 011267889999999765555666777777766677889988875431 1111 123
Q ss_pred ceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHhhh
Q 042336 329 DILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIGSL 385 (944)
Q Consensus 329 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~ 385 (944)
..+.+.+++.++...++...+........ ++..+.|++.++|.|..+..+...
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 47899999999999999887643322112 456678899999999876554433
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=1e-08 Score=98.86 Aligned_cols=94 Identities=23% Similarity=0.394 Sum_probs=48.7
Q ss_pred cEEEeccCCCcccccccchhhhcccccceeccCccccccc-CccccCCCcccEEEecCccCCcccCcc-cccCCCCceee
Q 042336 585 RALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKEL-PDTCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLI 662 (944)
Q Consensus 585 r~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 662 (944)
++|+++++. +..+|..+. .+|++|+|++|.|..+ |..+.++.+|++|+|++|. +..+|.. +..+++|++|+
T Consensus 12 ~~l~~s~n~----l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 12 TTVDCSGKS----LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TEEECTTSC----CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CEEEeCCCC----cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEE
Confidence 455555555 444554442 4555555555555544 3345555555555555554 4444443 34555555555
Q ss_pred cccccccccccc-ccCCCCCCcCC
Q 042336 663 FDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 663 l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
++.|.+..+|.+ +..+++|+.|.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCccCEeCHHHhcCCCCCCEEE
Confidence 555555555543 44555555544
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.75 E-value=9.2e-09 Score=99.46 Aligned_cols=94 Identities=23% Similarity=0.379 Sum_probs=77.7
Q ss_pred cEEEeccCCCcccccccchhhhcccccceeccCccccccc-CccccCCCcccEEEecCccCCcccCcc-cccCCCCceee
Q 042336 585 RALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKEL-PDTCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLI 662 (944)
Q Consensus 585 r~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 662 (944)
+.++++++. +..+|..+. .+|++|+|++|.+..+ |..++++.+|++|+|++|. +..+|.. +.++++|++|+
T Consensus 15 ~~l~~~~n~----l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIR----LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSC----CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCC----CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEE
Confidence 678888888 777887665 7889999999998877 5568889999999999987 7778776 47899999999
Q ss_pred cccccccccccc-ccCCCCCCcCC
Q 042336 663 FDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 663 l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
++.|.+..+|.+ +..+++|+.|.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCccceeCHHHhccccCCCEEE
Confidence 988888888876 78888888876
No 156
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.74 E-value=2.1e-08 Score=97.51 Aligned_cols=100 Identities=29% Similarity=0.471 Sum_probs=85.2
Q ss_pred CCcccEEEeccCCCcccccccch-hhhcccccceeccCcccccccCcc-ccCCCcccEEEecCccCCcccCcc-cccCCC
Q 042336 581 FTCLRALKITRNSKENSIYEIPK-EIQKLIHLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQG-VGKLVN 657 (944)
Q Consensus 581 ~~~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~ 657 (944)
.+.|++|++++|. +..+|. .++.+++|++|++++|.+..+|.. ++++.+|++|++++|. +..+|.. +..+++
T Consensus 27 ~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 27 PSSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQ 101 (177)
T ss_dssp CTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCCcEEEeCCCc----ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcc
Confidence 3689999999998 666665 468999999999999999988765 6899999999999998 7777765 689999
Q ss_pred Cceeecccccccccccc-ccCCCCCCcCC
Q 042336 658 LRHLIFDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 658 L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
|++|+++.|.+..+|.. +..+++|+.|+
T Consensus 102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 99999999999888876 47788888876
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.6e-07 Score=98.60 Aligned_cols=172 Identities=7% Similarity=-0.050 Sum_probs=107.8
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccc---cC--ceeEEEEeCCCCCHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVIN---NF--EKRIWVSVSDPFDEYRVA 248 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~F--~~~~wv~vs~~~~~~~~~ 248 (944)
.+.||++|.++|...|...-. .+....+.|+|++|+|||++|+.|++...... .. -..+.|++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 488999999999988765322 23567789999999999999999998532111 11 145677778888999999
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHh---cCCceEEEeCCCCccCccChhhhHhhhcc--CC-CCcEEEEEccchhh-
Q 042336 249 KAIIEALEGSAPNLGELNSLLQHICLSI---TGKKFLLVLDDVWTEDYSKWEPFHNCLMN--CL-HGSKILVTTRKETV- 321 (944)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdvw~~~~~~~~~l~~~l~~--~~-~gs~iivTtr~~~v- 321 (944)
..|++++.+..............+...+ .++++++|||++..-. .-+.+...+.. .. ....||.++...+.
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999765322222222333333332 5678999999995432 33445444431 11 12233444433221
Q ss_pred ----h----hcccccceEeCCCCChHHHHHHHHHHhc
Q 042336 322 ----A----RMMESIDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 322 ----~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
. ..+. ...+.+.+++.++-.+++.+++-
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1111 24689999999999999988763
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.62 E-value=2.5e-07 Score=102.00 Aligned_cols=195 Identities=13% Similarity=0.162 Sum_probs=114.6
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|++..++.+...+.... ....+.|+|.+|+||||+|+.+.+.......+.. ..+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHh
Confidence 358999999999999986432 2346789999999999999999873211111100 000000 0001110
Q ss_pred HH-------hhCC-CCCCCCHHHHHHHHHHH-hcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh-hh
Q 042336 253 EA-------LEGS-APNLGELNSLLQHICLS-ITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET-VA 322 (944)
Q Consensus 253 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~ 322 (944)
.. +... .....+...+...+... ..+++.+||+||+..-+....+.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000 01112233332222111 235678999999966555556677777766556777777776432 11
Q ss_pred hc-ccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHh
Q 042336 323 RM-MESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIG 383 (944)
Q Consensus 323 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 383 (944)
.. ......+.+.+++.++..+++.+.+...+.... .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 122468899999999999999876532221112 4556789999999998876654
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.62 E-value=5.8e-08 Score=93.47 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=73.6
Q ss_pred CcccEEEeccCCCccccccc-chhhhcccccceeccCcccccccCcc-ccCCCcccEEEecCccCCcccCcc-cccCCCC
Q 042336 582 TCLRALKITRNSKENSIYEI-PKEIQKLIHLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLPQG-VGKLVNL 658 (944)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L 658 (944)
+.|++|+|++|. +..+ |..+..+.+|++|+|++|.+..+|.. +.++.+|++|+|++|. +..+|.. +..+++|
T Consensus 30 ~~l~~L~L~~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQ----ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCCc----CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCC
Confidence 678999999998 6666 56789999999999999999988876 5899999999999997 7777764 8899999
Q ss_pred ceeeccccccccccc
Q 042336 659 RHLIFDVNFVEYMPK 673 (944)
Q Consensus 659 ~~L~l~~~~~~~lp~ 673 (944)
++|+++.|.+...+.
T Consensus 105 ~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 105 THIWLLNNPWDCACS 119 (170)
T ss_dssp CEEECCSSCBCTTBG
T ss_pred CEEEeCCCCCCCCch
Confidence 999998887655443
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.60 E-value=2.5e-07 Score=99.54 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=112.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCc-eeEEEEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFE-KRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 251 (944)
.+++|++..++.+.+++... ....+.++|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 45899999999999888542 222388999999999999999987310 11111 223344333111
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHH--h-cCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh-hhhc-cc
Q 042336 252 IEALEGSAPNLGELNSLLQHICLS--I-TGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET-VARM-ME 326 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~ 326 (944)
.............. + .+++.++|+|++..-.....+.+...+.....+.++|+||.... +... ..
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 11111111111111 1 25688999999965444445556666665556778888876543 2111 12
Q ss_pred ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 327 SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 327 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
....+.+.+++.++..+++...+...+.... ++..+.+++.++|.+..+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 2358999999999999999887654332222 455677889999999865544
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=3.3e-06 Score=93.19 Aligned_cols=272 Identities=10% Similarity=0.117 Sum_probs=138.9
Q ss_pred cCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcccccccCcc-ccCCCcccEEEecCccCCcccC-cccccCC
Q 042336 580 QFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCYNLNRLP-QGVGKLV 656 (944)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~ 656 (944)
.+..+..+.+.+. +..++ .++.++ +|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++ ..+..|+
T Consensus 111 ~~~~l~~i~ip~~-----i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 111 ILKGYNEIILPNS-----VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCY 180 (401)
T ss_dssp ECSSCSEEECCTT-----CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCT
T ss_pred ecCCccEEEECCc-----cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcc
Confidence 3345555555543 34443 234443 5666666554 5555443 334 3577777665 244444 3456677
Q ss_pred CCceeeccccccccccccccCCCCCCcCCceEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcc
Q 042336 657 NLRHLIFDVNFVEYMPKGIERLTCLRTLSEFVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELE 736 (944)
Q Consensus 657 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 736 (944)
+|+.+++..|.+..+|.+.-..++|+.+. ... +...... ..+.
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~----lp~-~l~~I~~--------------------------------~aF~ 223 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVL----LPV-TLKEIGS--------------------------------QAFL 223 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEE----CCT-TCCEECT--------------------------------TTTT
T ss_pred cCCeeecCCCcceEechhhEeecccCEEE----eCC-chheehh--------------------------------hHhh
Confidence 77777776666666665533344444443 000 0000001 1233
Q ss_pred cCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCceEEEeeCCCCCC-ChhhhcCCCccEEEeeccC
Q 042336 737 KKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLESLDVWKYRGETL-PSWIMSLNKLKKLELSFCN 815 (944)
Q Consensus 737 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 815 (944)
.+.+|+.+.+..+ +... -...+.. .+|+.+.|.++. ..+ +..+..+++|+.+.+.++.
T Consensus 224 ~~~~L~~l~l~~~-l~~I------------------~~~aF~~-~~L~~i~lp~~i-~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 224 KTSQLKTIEIPEN-VSTI------------------GQEAFRE-SGITTVKLPNGV-TNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TCTTCCCEECCTT-CCEE------------------CTTTTTT-CCCSEEEEETTC-CEECTTTTTTCTTCCEEEEESSC
T ss_pred CCCCCCEEecCCC-ccCc------------------ccccccc-CCccEEEeCCCc-cEEChhHhhCCCCCCEEEeCCcc
Confidence 3444444444322 0000 0011222 456666664332 233 3345567778888877654
Q ss_pred CC----CcCCC--CCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccCcccceee
Q 042336 816 KF----EIMPP--LGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLE 889 (944)
Q Consensus 816 ~~----~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~ 889 (944)
.. ..++. +..+++|+.+.|.+ .++.++. ..|..+..|+...++.. ........+..+ +|+.|.
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-------~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ-------GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVK 351 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT-------TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEE
T ss_pred ccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh-------hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEE
Confidence 32 12332 67788888888863 2444433 34555555555555543 122233456677 999999
Q ss_pred ecccccccCCCC-CCCCC-CCcCeEEEecCcchhhhcCcCCCCCCCcc
Q 042336 890 IRDCHKLKSLPH-QILGN-TTLQMLKIYNCRILEERFDEETGEDWSKI 935 (944)
Q Consensus 890 l~~c~~l~~lp~-~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~i 935 (944)
+.++. +..++. .+.++ .+++.|.+-.+.. +.+.. ...|...
T Consensus 352 l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~~--~~y~~--a~~W~~f 394 (401)
T 4fdw_A 352 VEGTT-PPQVFEKVWYGFPDDITVIRVPAESV--EKYKN--ANGWRDF 394 (401)
T ss_dssp ECCSS-CCBCCCSSCCCSCTTCCEEEECGGGH--HHHHH--STTGGGG
T ss_pred EcCCC-CcccccccccCCCCCccEEEeCHHHH--HHhhh--ccchhhh
Confidence 99874 344443 34455 4788999977652 33332 2457544
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.45 E-value=2.6e-07 Score=94.77 Aligned_cols=172 Identities=15% Similarity=0.098 Sum_probs=100.2
Q ss_pred ccccc---hhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH
Q 042336 174 EVRGR---DEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 174 ~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
.|+|. +..++.+..+.... ....+.|+|.+|+||||||+.+++. .......+.|++++.-...
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------
Confidence 46653 34556666665422 3457889999999999999999883 3333345567766442110
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccC--hhhhHhhhccC-CCC-cEEEEEccchh------
Q 042336 251 IIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSK--WEPFHNCLMNC-LHG-SKILVTTRKET------ 320 (944)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~~------ 320 (944)
. ... + +. -.++.+||+||+....... .+.+...+... ..+ .++|+||+...
T Consensus 95 --------~------~~~---~-~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 --------S------TAL---L-EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp --------C------GGG---G-TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred --------H------HHH---H-Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 0 000 0 01 1456799999996543222 23344433221 122 24777776332
Q ss_pred ---hhhcccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 321 ---VARMMESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 321 ---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
+...+.....+.+.+++.++..+++...+........ ++..+.|++.++|.+-.+..+
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP----EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC----HHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHccCCHHHHHHH
Confidence 1111112268999999999999999887643222112 456678889999988766554
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.44 E-value=6.2e-06 Score=90.97 Aligned_cols=98 Identities=10% Similarity=0.212 Sum_probs=64.0
Q ss_pred hhcCCcccEEEeccCCCcccccccch-hhhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCcccCcccccC
Q 042336 578 FNQFTCLRALKITRNSKENSIYEIPK-EIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQGVGKL 655 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 655 (944)
|.++ +|+.+.+.++ +..++. ++.+ .+|+.+.+.. .+..++. .+.+|.+|+.+++..+. +..+|...-..
T Consensus 132 F~~~-~L~~i~l~~~-----i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~ 202 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-----LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVY 202 (401)
T ss_dssp TTTC-CCSEEECCTT-----CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTT
T ss_pred cccC-CccEEEeCCC-----ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEee
Confidence 5554 6888887654 445543 3444 3688888875 5565553 47788888888888766 77777765556
Q ss_pred CCCceeecccccccccccc-ccCCCCCCcCC
Q 042336 656 VNLRHLIFDVNFVEYMPKG-IERLTCLRTLS 685 (944)
Q Consensus 656 ~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 685 (944)
.+|+.+.+.. .+..++.. +..+++|+.+.
T Consensus 203 ~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 203 AGIEEVLLPV-TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCSEEECCT-TCCEECTTTTTTCTTCCCEE
T ss_pred cccCEEEeCC-chheehhhHhhCCCCCCEEe
Confidence 7888888753 35555543 56666676664
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.43 E-value=6.2e-07 Score=88.28 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=82.0
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc---cc--cCceeEEEEeCCCCCHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV---IN--NFEKRIWVSVSDPFDEYRV 247 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~--~F~~~~wv~vs~~~~~~~~ 247 (944)
..++||+++++++.+.+... ..+.+.|+|.+|+|||++|+.+++...- .. .....+++.++. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 46899999999999998642 2345789999999999999999874111 00 112334443321 1
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHh--cCCceEEEeCCCCccC--------ccChhhhHhhhccCCCCcEEEEEcc
Q 042336 248 AKAIIEALEGSAPNLGELNSLLQHICLSI--TGKKFLLVLDDVWTED--------YSKWEPFHNCLMNCLHGSKILVTTR 317 (944)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTtr 317 (944)
. .. .............+.+.+ .+++.+|||||+.... ......+...+.. .+..+|.||.
T Consensus 90 ~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp H-------TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred h-------cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 0 00 000000111111222211 4668899999995432 1123334333322 2445666666
Q ss_pred chhhhh------c-ccccceEeCCCCChHHHHHHH
Q 042336 318 KETVAR------M-MESIDILIIKELSELECWSLF 345 (944)
Q Consensus 318 ~~~v~~------~-~~~~~~~~l~~L~~~~~~~lf 345 (944)
...... . ......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 544221 1 112236888888888876553
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=2.2e-06 Score=93.57 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=114.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCc-eeEEEEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFE-KRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 251 (944)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+.+.......+. ..+.++.+....... +++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 468999999999999986432 22388999999999999999987421111121 223344443323322 2222
Q ss_pred HHHhhCC-CCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh-hhhcc-ccc
Q 042336 252 IEALEGS-APNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET-VARMM-ESI 328 (944)
Q Consensus 252 ~~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~ 328 (944)
+..+... ....... .....-.+++-+|++|++..-.......+...+.......++|++|.... +.... ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2222211 1111000 00011124556999999965444445566666666556677887775432 21111 113
Q ss_pred ceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 329 DILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 329 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
..+.+.+++.++....+...+........ ++..+.|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 47889999999999999887643322222 456788999999999875544
No 166
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.39 E-value=3.8e-06 Score=90.94 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=106.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++|++..++.+..++..... .......+.|+|++|+|||++|+.+++. ....| +.++++....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 4699999999999988864311 1123456889999999999999999873 22222 2333322111
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC------------------CCcEEEE
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL------------------HGSKILV 314 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 314 (944)
.......+.. ..+..+|+||++..........+...+.... ++..+|.
T Consensus 94 ------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 ------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1111111111 2456789999996554444444555554432 1245666
Q ss_pred Eccchhh-hhcc-c-ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 315 TTRKETV-ARMM-E-SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 315 Ttr~~~v-~~~~-~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
||..... .... . ....+.+.+++.++...++.+.+...... ..++..+.|++.+.|.|-.+..+
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT----CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE----ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHCcCHHHHHHH
Confidence 6654321 1111 1 13579999999999999998876432211 12456677888999999655544
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=3.7e-07 Score=99.41 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=50.7
Q ss_pred hhcCCcccEEEecc-CCCcccccccc-hhhhcccccceeccCcccccccCc-cccCCCcccEEEecCccCCcccCccccc
Q 042336 578 FNQFTCLRALKITR-NSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELPD-TCCELFNLQTIEIEGCYNLNRLPQGVGK 654 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~-~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 654 (944)
+..+++|++|+|++ |. +..+| ..++.|.+|++|+|++|.|..+|. .|++|.+|++|+|++|. +..+|..+..
T Consensus 27 l~~~~~L~~L~l~~~n~----l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH----LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSS----CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTC
T ss_pred CCCCCCeeEEEccCCCC----CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcc
Confidence 55566666666664 55 45544 446666666666666666665443 45666666666666665 5555554433
Q ss_pred CCCCceeeccccccc
Q 042336 655 LVNLRHLIFDVNFVE 669 (944)
Q Consensus 655 L~~L~~L~l~~~~~~ 669 (944)
..+|+.|++..|.+.
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 333666666555443
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.29 E-value=7.6e-07 Score=96.94 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=57.3
Q ss_pred EEeccC-CCcccccccchhhhcccccceeccCc-ccccccC-ccccCCCcccEEEecCccCCcccCc-ccccCCCCceee
Q 042336 587 LKITRN-SKENSIYEIPKEIQKLIHLRYFKLHW-LEIKELP-DTCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLI 662 (944)
Q Consensus 587 L~L~~~-~~~~~~~~lp~~i~~l~~Lr~L~Ls~-~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 662 (944)
++++++ . +..+|. |+.+.+|++|+|++ |.+..+| ..|++|.+|++|+|++|. +..+|. .|.+|++|++|+
T Consensus 13 v~~~~~n~----l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 13 LRCTRDGA----LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp EECCSSCC----CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEE
T ss_pred EEcCCCCC----CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEe
Confidence 455555 4 556666 66677777777764 6666665 346677777777777765 444443 456677777777
Q ss_pred ccccccccccccccCCCCCCcCC
Q 042336 663 FDVNFVEYMPKGIERLTCLRTLS 685 (944)
Q Consensus 663 l~~~~~~~lp~~i~~l~~L~~L~ 685 (944)
|+.|.+..+|.++.....|+.|.
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELV 109 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEE
T ss_pred CCCCccceeCHHHcccCCceEEE
Confidence 76666666665543333355554
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.29 E-value=2.9e-05 Score=85.91 Aligned_cols=308 Identities=14% Similarity=0.084 Sum_probs=157.3
Q ss_pred hhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcccccccCc
Q 042336 548 VFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELPD 626 (944)
Q Consensus 548 ~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP~ 626 (944)
..+..|.+|+++.+...-. ..-...|.+|.+|+.++|.++ +..++ .++.++..|+.+.+..+ +..++.
T Consensus 65 ~AF~~c~~L~~i~lp~~i~-----~I~~~aF~~c~~L~~i~lp~~-----l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTVR-----EIGEFAFENCSKLEIINIPDS-----VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTTCC-----EECTTTTTTCTTCCEECCCTT-----CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred HHhhCCCCceEEEeCCCcc-----CcchhHhhCCCCCcEEEeCCC-----ceEccchhhcccccchhhcccCc-eeeecc
Confidence 3466788999988864311 111234788899999988654 44444 45677888888777654 333322
Q ss_pred -cccCCCcccEEEecCccCCcccCcccccCCCCceeecccccccccccc-ccCCCCCCcCCceEecccccCCCCcccccc
Q 042336 627 -TCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFDVNFVEYMPKG-IERLTCLRTLSEFVVVSRSDKYGNKACNLG 704 (944)
Q Consensus 627 -~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 704 (944)
.+.++..+..........+ -...+..+++|+.+.+..+ +..++.+ +..+++|+.+.. .. +........+.
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l----~~-~~~~I~~~~F~ 205 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKL----PR-NLKIIRDYCFA 205 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCC----CT-TCCEECTTTTT
T ss_pred eeeecccccccccCcccccc--chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEc----CC-CceEeCchhhc
Confidence 2444433333333222211 1234667788888877443 2344433 556666766651 11 01111122344
Q ss_pred cCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCCcccHHHHhccCCCCCCCc
Q 042336 705 GLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKNEVSHEAICEALRPPPNLE 784 (944)
Q Consensus 705 ~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 784 (944)
++..|+.+... ..+.... .......+|+.+.+.... ... -...+..+.+|+
T Consensus 206 ~~~~L~~i~~~------~~~~~i~----~~~~~~~~l~~i~ip~~~-~~i------------------~~~~f~~~~~l~ 256 (394)
T 4fs7_A 206 ECILLENMEFP------NSLYYLG----DFALSKTGVKNIIIPDSF-TEL------------------GKSVFYGCTDLE 256 (394)
T ss_dssp TCTTCCBCCCC------TTCCEEC----TTTTTTCCCCEEEECTTC-CEE------------------CSSTTTTCSSCC
T ss_pred cccccceeecC------CCceEee----hhhcccCCCceEEECCCc-eec------------------ccccccccccce
Confidence 44444433200 0000000 111223456666654220 000 012344566777
Q ss_pred eEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCCCCCCCCcceeeecccccceEeCccccCccCccCccccccccc
Q 042336 785 SLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFV 864 (944)
Q Consensus 785 ~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~ 864 (944)
.+.+..+...--...+..+..|+.+.+......+ ..+..+.+|+.+.+.. .++.++. .+|..+..|+-.
T Consensus 257 ~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~--~i~~I~~-------~aF~~c~~L~~i 325 (394)
T 4fs7_A 257 SISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD--SVKFIGE-------EAFESCTSLVSI 325 (394)
T ss_dssp EEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT--TCCEECT-------TTTTTCTTCCEE
T ss_pred eEEcCCCcceeeccccccccccceeccCceeecc--cccccccccccccccc--ccceech-------hhhcCCCCCCEE
Confidence 7777654422122334466777777665432111 1255677788777743 2333332 346555555555
Q ss_pred cccccccccccCCccccCcccceeeecccccccCCCC-CCCCCCCcCeEEEecC
Q 042336 865 DLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPH-QILGNTTLQMLKIYNC 917 (944)
Q Consensus 865 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 917 (944)
.+++. .-......+..+.+|+.+.|..+ ++.++. .+.+|++|+.+.+..+
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 55532 11223344567788888888654 566654 3667888888888654
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.23 E-value=5e-06 Score=92.79 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=96.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCc--eeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFE--KRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
...+.|+|.+|+||||||+.+++ .....+. .+++++.. .+..++...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 56789999999999999999998 3333332 23455433 3444555554432 11 12333334
Q ss_pred CCceEEEeCCCCccCc--cChhhhHhhhcc-CCCCcEEEEEccchh---------hhhcccccceEeCCCCChHHHHHHH
Q 042336 278 GKKFLLVLDDVWTEDY--SKWEPFHNCLMN-CLHGSKILVTTRKET---------VARMMESIDILIIKELSELECWSLF 345 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 345 (944)
.+.-+|++||+..... ...+.+...+.. ...|..||+||.... +...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4678999999954322 122334444322 235678888887521 2222333467899999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHH
Q 042336 346 KRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAK 380 (944)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 380 (944)
.+.+........ ++....|++.++|.+-.+.
T Consensus 273 ~~~~~~~~~~i~----~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHGELP----EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTCCCC----TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHH
Confidence 887642221112 2345678888899886543
No 171
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.19 E-value=2.3e-05 Score=85.93 Aligned_cols=198 Identities=12% Similarity=0.077 Sum_probs=106.5
Q ss_pred CccccchhHHHH---HHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEe----CCCCCHH
Q 042336 173 SEVRGRDEEKNT---LKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSV----SDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~~ 245 (944)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+.+. ..... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccchh
Confidence 469999988766 444444322 12357889999999999999999884 22111 1122221 2233444
Q ss_pred HHHHHHHHHhhCC---------------------CC-------C-C-CCHHHHHHHHHHH-----hcCC----ceEEEeC
Q 042336 246 RVAKAIIEALEGS---------------------AP-------N-L-GELNSLLQHICLS-----ITGK----KFLLVLD 286 (944)
Q Consensus 246 ~~~~~i~~~l~~~---------------------~~-------~-~-~~~~~~~~~l~~~-----l~~k----~~LlVlD 286 (944)
..+...+....+. .. . . .....+...+... ..++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 4444443331110 00 0 0 0011222222211 1233 4599999
Q ss_pred CCCccCccChhhhHhhhccCCCCcEEEEEccc-------------hhhhh-cccccceEeCCCCChHHHHHHHHHHhcCC
Q 042336 287 DVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK-------------ETVAR-MMESIDILIIKELSELECWSLFKRFAFFG 352 (944)
Q Consensus 287 dvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-------------~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 352 (944)
++..-+....+.+...+...... .++++|.. ..+.. .......+.+.+++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99665555555566666544333 34444431 11101 11122457999999999999998876433
Q ss_pred CCCCCchhHHHHHHHHHHhhC-CChhhHHHH
Q 042336 353 RSPFECKQLEEIGRKIVGKCK-GLPLAAKTI 382 (944)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~-GlPlai~~~ 382 (944)
..... ++..+.|++.+. |.|..+..+
T Consensus 276 ~~~~~----~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DVEMS----EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TCCBC----HHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCCC----HHHHHHHHHHhcCCCHHHHHHH
Confidence 22222 456677888887 887665444
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.17 E-value=2e-05 Score=87.64 Aligned_cols=178 Identities=16% Similarity=0.149 Sum_probs=102.4
Q ss_pred CccccchhHH---HHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC-CCHHHHH
Q 042336 173 SEVRGRDEEK---NTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP-FDEYRVA 248 (944)
Q Consensus 173 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~ 248 (944)
.+++|.+..+ ..+...+... ....+.|+|.+|+||||+|+.+++. .... ++.++.. ..... +
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHH-H
Confidence 4688988877 6677777432 3467889999999999999999983 2222 2333221 12221 1
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEE-Eccchh--hh-hc
Q 042336 249 KAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILV-TTRKET--VA-RM 324 (944)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v~-~~ 324 (944)
+.++... ......+++.+|++|++..-.....+.+...+..+ ...+|. ||.+.. +. ..
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 2221110 01112467889999999765555556666666652 233443 444432 11 11
Q ss_pred ccccceEeCCCCChHHHHHHHHHHhcCCCCC---CCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 325 MESIDILIIKELSELECWSLFKRFAFFGRSP---FECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 325 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
.....++.+.+++.++...++.+.+...... ....-.++..+.|++.++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2224588899999999999998876431110 111122456677888899988765443
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.2e-05 Score=91.93 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=108.4
Q ss_pred CccccchhHHHHHHHHhccCCc-----------ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS-----------EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP 241 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 241 (944)
.+++|++..++++.+++..... .+.+..+.+.|+|++|+||||+|+.+++.. .+ ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 4689999999999999864110 001134688999999999999999999842 12 2344555544
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccC---hhhhHhhhccCCCCcEEEEEccc
Q 042336 242 FDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSK---WEPFHNCLMNCLHGSKILVTTRK 318 (944)
Q Consensus 242 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~---~~~l~~~l~~~~~gs~iivTtr~ 318 (944)
.... +....+........-..-...... .....+++.+||+|++..-.... +..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4332 222222222111000000000000 00124678899999995432211 24455444442 3345555543
Q ss_pred hh---hhhcccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh-hHHHH
Q 042336 319 ET---VARMMESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL-AAKTI 382 (944)
Q Consensus 319 ~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 382 (944)
.. +.........+.+.+++.++..+++...+........ ++....|++.++|.+- ++..+
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 22 2222222457899999999999998876643322222 2345678899999554 44444
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=1e-06 Score=96.20 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=65.1
Q ss_pred ceEEEEEEeCCCCc--chhhccCCCCeeEEEEecCCcccccchhHHHHh-hcCCcccEEEeccCCCccc-ccccchhhhc
Q 042336 532 ELRHSMLVFGNEAS--FPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLF-NQFTCLRALKITRNSKENS-IYEIPKEIQK 607 (944)
Q Consensus 532 ~~r~lsl~~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~-~~~~~Lr~L~L~~~~~~~~-~~~lp~~i~~ 607 (944)
.++.+.+..+.+.. .......+++|+.|++.+|.........+...+ ...+.|++|+|++|..... ...++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 45555555554432 111112234566666666543221112222222 2345566666666652110 1123344455
Q ss_pred ccccceeccCccccc-----ccCccccCCCcccEEEecCccCCc-----ccCcccccCCCCceeeccccccc
Q 042336 608 LIHLRYFKLHWLEIK-----ELPDTCCELFNLQTIEIEGCYNLN-----RLPQGVGKLVNLRHLIFDVNFVE 669 (944)
Q Consensus 608 l~~Lr~L~Ls~~~i~-----~lP~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~ 669 (944)
+++|++|+|++|.|. .++..+..+.+|++|+|++|. +. .++..+...++|++|++++|.+.
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 666666666666654 234445555566666666665 32 23333445566666666555443
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.13 E-value=1.1e-05 Score=86.56 Aligned_cols=179 Identities=14% Similarity=0.130 Sum_probs=104.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.+++|.+..++.+..++.... ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. .. ..++..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CH-HHHHHHH
Confidence 468999999999999996432 3457788889999999999999873 21 12344554432 22 2222222
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccC-ccChhhhHhhhccCCCCcEEEEEccchh-hhhcc-cccc
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTED-YSKWEPFHNCLMNCLHGSKILVTTRKET-VARMM-ESID 329 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~ 329 (944)
....... ...+++.+||+||+..-. ....+.+...+.....+.++|+||.... +.... ....
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 2211100 013478899999996543 3344556555554445678888886543 11111 1134
Q ss_pred eEeCCCCChHHHHHH-------HHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 330 ILIIKELSELECWSL-------FKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 330 ~~~l~~L~~~~~~~l-------f~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
.+.+.+++.++-.++ +...+......... .+....|++.++|.+..+..
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHH
Confidence 789999998874333 22222111111111 25667788889888765443
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.10 E-value=3.3e-05 Score=80.06 Aligned_cols=187 Identities=11% Similarity=0.056 Sum_probs=97.3
Q ss_pred CccccchhHHHHHHHHhc---cCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLL---CENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+++|.+..++.+.+++. .... .+....+.+.|+|++|+|||++|+.+++. .... .+.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 468999988877766543 1110 00123355789999999999999999883 2222 234444332110
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCcc------------CccChhhhHhh---hcc--CCCC
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTE------------DYSKWEPFHNC---LMN--CLHG 309 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------------~~~~~~~l~~~---l~~--~~~g 309 (944)
. .......+...+.......+.+|++||+..- +......+... +.. ...+
T Consensus 79 ------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 ------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0 0000111222223333456789999999542 11111222222 222 1235
Q ss_pred cEEEEEccchhhh-hcc-c---ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh-hHHHH
Q 042336 310 SKILVTTRKETVA-RMM-E---SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL-AAKTI 382 (944)
Q Consensus 310 s~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 382 (944)
..||.||...... ... . -...+.+...+.++..+++...+...... . ........+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-Q--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-B--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-c--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 5666666544321 111 1 13577889999999999998876432221 1 112234678888888754 44333
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.10 E-value=5.7e-05 Score=81.16 Aligned_cols=173 Identities=10% Similarity=0.050 Sum_probs=103.8
Q ss_pred hhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc--------------------ccCceeEEEEe
Q 042336 179 DEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI--------------------NNFEKRIWVSV 238 (944)
Q Consensus 179 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v 238 (944)
++..+.+...+..+ .-...+.++|..|+|||++|+.+.+.-.-. .+++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 44566677766432 234578899999999999999887631100 0122 222222
Q ss_pred C---CCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEE
Q 042336 239 S---DPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVT 315 (944)
Q Consensus 239 s---~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 315 (944)
. ....++. .+++.+.+... -..+++-++|+|++..-+....+.+...+.....++.+|++
T Consensus 82 ~~~~~~~~i~~-ir~l~~~~~~~----------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 82 EKGKNTLGVDA-VREVTEKLNEH----------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp CTTCSSBCHHH-HHHHHHHTTSC----------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred cccCCCCCHHH-HHHHHHHHhhc----------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 1 1111111 11222221111 01356789999999665545566677777766667777777
Q ss_pred ccchh-hhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHh
Q 042336 316 TRKET-VARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIG 383 (944)
Q Consensus 316 tr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 383 (944)
|.+.. +.... .....+.+.+++.++..+++.+.. ... ++.+..+++.++|.|..+..+.
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 76542 22221 224589999999999999998875 112 3455779999999998765543
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.09 E-value=2.2e-05 Score=82.56 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=99.6
Q ss_pred CccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
..++|.+..++.+.+.+...... +-...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~--- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV--- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH---
Confidence 56899999999998877432000 0013345889999999999999999883 2222 2223322210
Q ss_pred HHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHhcCCceEEEeCCCCcc-----------CccChhhhHhhhc-----cCCC
Q 042336 246 RVAKAIIEALEGSAPNLGELNS-LLQHICLSITGKKFLLVLDDVWTE-----------DYSKWEPFHNCLM-----NCLH 308 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~-----~~~~ 308 (944)
... ...... ....+......++.+|+|||+..- +......+...+. ....
T Consensus 89 -----------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 89 -----------KKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp -----------CCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred -----------Hhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 000 011111 222222233456789999999431 1111122322222 1224
Q ss_pred CcEEEEEccchhhhhc--c---cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCC-ChhhHHH
Q 042336 309 GSKILVTTRKETVARM--M---ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKG-LPLAAKT 381 (944)
Q Consensus 309 gs~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~~ 381 (944)
+..||.||........ . .-...+.+...+.++..+++...+...... .... ...+++.+.| .|-.+..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCC----HHHHHHHcCCCCHHHHHH
Confidence 5677888865432211 1 113478899999999999998876433221 1112 3456677776 4434443
No 179
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.08 E-value=7.8e-07 Score=97.22 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=99.9
Q ss_pred ceEEEEEEeCCCCc-----chhhcc-CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccccccc-chh
Q 042336 532 ELRHSMLVFGNEAS-----FPVFMF-NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEI-PKE 604 (944)
Q Consensus 532 ~~r~lsl~~~~~~~-----~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~l-p~~ 604 (944)
.++.+.+..+.+.. +...+. .+++|++|++.++... ...+..+...+++|+.|+|++|. +... ...
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~L~~L~~L~Ls~n~----l~~~~~~~ 145 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNS----LGPEACKD 145 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC---HHHHHHTHHHHHTEEEEECCSSC----CCHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC---HHHHHHHHHHHHhccHhhcCCCC----CCHHHHHH
Confidence 35566666666543 112222 3479999999998743 23345555667789999999998 4332 222
Q ss_pred h-----hcccccceeccCccccc-----ccCccccCCCcccEEEecCccCCc-----ccCcccccCCCCceeeccccccc
Q 042336 605 I-----QKLIHLRYFKLHWLEIK-----ELPDTCCELFNLQTIEIEGCYNLN-----RLPQGVGKLVNLRHLIFDVNFVE 669 (944)
Q Consensus 605 i-----~~l~~Lr~L~Ls~~~i~-----~lP~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~ 669 (944)
+ ....+|++|+|++|.+. .++..+..+++|++|+|++|. +. .++..+..+++|++|++++|.+.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 3 24678999999999975 366667888999999999987 54 34566778889999999888765
Q ss_pred c-----ccccccCCCCCCcCC
Q 042336 670 Y-----MPKGIERLTCLRTLS 685 (944)
Q Consensus 670 ~-----lp~~i~~l~~L~~L~ 685 (944)
. ++..+...++|++|+
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLH 245 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEe
Confidence 3 333445566777775
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=3e-05 Score=84.38 Aligned_cols=196 Identities=10% Similarity=0.089 Sum_probs=108.0
Q ss_pred CccccchhHHHHHHHHh-ccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC---ccccc-cCc----------------
Q 042336 173 SEVRGRDEEKNTLKTKL-LCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND---NDVIN-NFE---------------- 231 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~---~~~~~-~F~---------------- 231 (944)
.+++|.+..++.+..++ .... ... +.|+|+.|+||||+|+.+... +.... .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45899999999888887 4321 223 899999999999999988762 11000 000
Q ss_pred ----eeEEEEeCCCC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccC
Q 042336 232 ----KRIWVSVSDPF-DEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNC 306 (944)
Q Consensus 232 ----~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~ 306 (944)
..+.+..+... ......++++..+.....-. ... .+ ..+.+++-++|+|++..-+....+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 01111111100 00012233333332111000 000 00 002346779999999665555556677777665
Q ss_pred CCCcEEEEEccchh-hhhcc-cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHHh
Q 042336 307 LHGSKILVTTRKET-VARMM-ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTIG 383 (944)
Q Consensus 307 ~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 383 (944)
..+..+|++|.... +.... .....+.+.+++.++..+++...+...+..... ++....|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 56778888876532 22111 223678999999999999998776332211110 2446778899999987665543
No 181
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=5.4e-05 Score=81.70 Aligned_cols=183 Identities=11% Similarity=0.091 Sum_probs=105.6
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCc-eeEEEEeCCCCCHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFE-KRIWVSVSDPFDEYRVAKAI 251 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 251 (944)
..++|.+..++.+...+..+ ....+.++|++|+||||+|+.+++.-. ...+. ...-++.+.......+ +..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 35789988888888888543 222388999999999999999987311 11111 1122222222222111 111
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh-hhhc-ccccc
Q 042336 252 IEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET-VARM-MESID 329 (944)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~ 329 (944)
+..+.... ..+.+.+-++|+|++..-.....+.+...+.......++|++|.... +... .....
T Consensus 97 i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11111000 00123467899999955444445566666665556677777775432 1111 11234
Q ss_pred eEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 330 ILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 330 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
.+.+.+++.++..+.+...+-....... ++..+.|++.++|.+--+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 7889999999999988876532221112 45567888999998875433
No 182
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.01 E-value=5e-07 Score=97.80 Aligned_cols=141 Identities=21% Similarity=0.199 Sum_probs=83.3
Q ss_pred ccCCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCc-CCCC--CCCCCcceeeecccccceEeCcc-c---
Q 042336 775 EALRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEI-MPPL--GKLPSLELLEVFALQSVKRVGDE-F--- 847 (944)
Q Consensus 775 ~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~-l~~l--~~l~~L~~L~L~~~~~l~~~~~~-~--- 847 (944)
..+.++|+|++|.|+++....+|. + .+++|++|.|..|..... +..+ ..+|+|++|.|..+.... .+.. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY-GFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG-TCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc-ccchhHHHH
Confidence 344567889999998875445555 3 378899999987764321 1122 368899999885321100 0000 0
Q ss_pred c-CccCccCccccccccccccccccccccCCccccCcccceeeecccccccC-----CCCCCCCCCCcCeEEEecCcc
Q 042336 848 L-GIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKS-----LPHQILGNTTLQMLKIYNCRI 919 (944)
Q Consensus 848 ~-~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~c~~ 919 (944)
. ......||+|+.|.+.++.--......-.....+|+|++|+|+.|. +.. ++..+.++++|+.|++++|..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 0 0111358888888776543211110000001258999999998875 433 455556788999999998865
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.01 E-value=4.3e-05 Score=81.37 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=89.4
Q ss_pred ccccchhHHHHHHHHhccCC---------cccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCH
Q 042336 174 EVRGRDEEKNTLKTKLLCEN---------SEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDE 244 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 244 (944)
.++|.+..++.+.+.+.... -........+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888888876653210 000223456889999999999999988773221111111223333310
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCcc---------CccChhhhHhhhccCCCCcEEEEE
Q 042336 245 YRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTE---------DYSKWEPFHNCLMNCLHGSKILVT 315 (944)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 315 (944)
.+...... .........+... +.-+|++|++..- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 01111000 0111122222222 3459999999522 223335566666666567788888
Q ss_pred ccchhhhhc------c-c-ccceEeCCCCChHHHHHHHHHHhc
Q 042336 316 TRKETVARM------M-E-SIDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 316 tr~~~v~~~------~-~-~~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
|........ + . ....+.+.+++.++-.+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 864332111 0 1 136789999999999999988764
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.01 E-value=8.6e-05 Score=79.58 Aligned_cols=155 Identities=19% Similarity=0.130 Sum_probs=87.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGK 279 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 279 (944)
...+.|+|++|+||||||+.+++. ....-...+++++ ..+...+...+... .... +...+ .+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~-~~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMY-KS 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHH-HT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHh-cC
Confidence 456889999999999999999983 2111123345543 23344444443221 1111 12222 23
Q ss_pred ceEEEeCCCCccCc--cChhhhHhhhcc-CCCCcEEEEEccchh---------hhhcccccceEeCCCCChHHHHHHHHH
Q 042336 280 KFLLVLDDVWTEDY--SKWEPFHNCLMN-CLHGSKILVTTRKET---------VARMMESIDILIIKELSELECWSLFKR 347 (944)
Q Consensus 280 ~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 347 (944)
.-+|++||+..-.. .....+...+.. ...|..||+||.... +...+....++.+.+ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 67999999954321 112234333321 124567888875331 111222235789999 99999999988
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHhhCCChhh
Q 042336 348 FAFFGRSPFECKQLEEIGRKIVGKCKGLPLA 378 (944)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 378 (944)
.+........ ++....|++.+ |.+-.
T Consensus 178 ~~~~~~~~l~----~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 178 KLKEFNLELR----KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTTCCCC----HHHHHHHHHHC-SSHHH
T ss_pred HHHhcCCCCC----HHHHHHHHHhC-CCHHH
Confidence 7643222122 45566788888 77654
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.00 E-value=6.4e-05 Score=78.28 Aligned_cols=171 Identities=13% Similarity=0.115 Sum_probs=89.2
Q ss_pred ccccchhHHHHHHH-------HhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 174 EVRGRDEEKNTLKT-------KLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 174 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.++|.....+++.. .+... .......+.|+|.+|+|||++|+.+++. ....| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH-----
Confidence 46777776666655 23211 1235678899999999999999999983 22221 22222211
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCcc------CccCh----hhhHhhhcc---CCCCcEEE
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTE------DYSKW----EPFHNCLMN---CLHGSKIL 313 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------~~~~~----~~l~~~l~~---~~~gs~ii 313 (944)
+.+. ........+...+......+..+|+|||+..- ....- ..+...+.. ......||
T Consensus 101 --------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 --------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp --------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred --------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0000 00000111222233333467889999998431 11111 222222221 12234566
Q ss_pred EEccchhhhhc---ccc-cceEeCCCCCh-HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC
Q 042336 314 VTTRKETVARM---MES-IDILIIKELSE-LECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL 375 (944)
Q Consensus 314 vTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 375 (944)
.||........ ... ...+.+++++. ++...++.+.. ... .+....|++.+.|.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-----~~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-----NFK----DKERTTIAQQVKGK 229 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-----CSC----HHHHHHHHHHHTTS
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-----CCC----HHHHHHHHHHhcCC
Confidence 67766543322 111 45688999988 66666665531 111 44567788888883
No 186
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=4.2e-06 Score=81.49 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=84.8
Q ss_pred hhhccCCCCeeEEEEecC-CcccccchhHHHHhhcCCcccEEEeccCCCccc-ccccchhhhcccccceeccCccccc--
Q 042336 547 PVFMFNAKKLRSLLIHNI-PIEVSSSPVLQVLFNQFTCLRALKITRNSKENS-IYEIPKEIQKLIHLRYFKLHWLEIK-- 622 (944)
Q Consensus 547 ~~~~~~~~~Lr~L~l~~~-~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~-~~~lp~~i~~l~~Lr~L~Ls~~~i~-- 622 (944)
...+..++.|++|.+.++ .........+...+...+.|++|+|++|..... ...+...+...+.|++|+|++|.|.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345567888999999887 643322334555567788899999999883221 1124455666788999999999876
Q ss_pred ---ccCccccCCCcccEEEe--cCccCCcc-----cCcccccCCCCceeeccccccc
Q 042336 623 ---ELPDTCCELFNLQTIEI--EGCYNLNR-----LPQGVGKLVNLRHLIFDVNFVE 669 (944)
Q Consensus 623 ---~lP~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~ 669 (944)
.+...+....+|++|+| ++|. +.. +...+...++|++|+++.|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 36677788888999999 6676 432 4455566788999988776554
No 187
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.96 E-value=1.1e-05 Score=78.53 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..++||+.+++.+.+.+... ....+.|+|.+|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998642 2345689999999999999999873
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=9.9e-06 Score=87.60 Aligned_cols=64 Identities=14% Similarity=0.078 Sum_probs=29.1
Q ss_pred hhcCCcccEEEeccCCCcc-c-----ccccchhhhcccccceeccCcccccccCccccCCCcccEEEecCcc
Q 042336 578 FNQFTCLRALKITRNSKEN-S-----IYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELFNLQTIEIEGCY 643 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~-~-----~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~ 643 (944)
...+++|+.|.+.+..... . ...++..+..+++|+.|+|+++.-..+|. + .+++|++|++..|.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC
Confidence 3456677777665432100 0 01233334445555555555542112332 2 25555555555544
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.94 E-value=0.00012 Score=78.35 Aligned_cols=185 Identities=17% Similarity=0.132 Sum_probs=102.0
Q ss_pred CccccchhHHHHHHHHhccC-------CcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCE-------NSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.+++|.+..++.+.+.+... .. .....+-+.++|.+|+|||+||+.+++. ....| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------
Confidence 46899999999998877310 01 1123456889999999999999999883 32222 223221
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHH-HHhcCCceEEEeCCCCccCc-------cC----hhhhHhhhc---cCCCCc
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHIC-LSITGKKFLLVLDDVWTEDY-------SK----WEPFHNCLM---NCLHGS 310 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~-------~~----~~~l~~~l~---~~~~gs 310 (944)
.+ .... ....+.....+. ..-..++.+|+||++..-.. .. ...+...+. ....+.
T Consensus 86 ~l--------~~~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL--------VSKW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH--------HTTT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH--------hhcc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 1110 011122222222 22245678999999943211 00 223333332 223455
Q ss_pred EEEEEccchhhhh-cc--cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC-hhhHHHHh
Q 042336 311 KILVTTRKETVAR-MM--ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL-PLAAKTIG 383 (944)
Q Consensus 311 ~iivTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~~ 383 (944)
.||.||....... .+ .-...+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666776432211 11 12356778888999999999987644322112 33456788888874 44444443
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.90 E-value=1.2e-05 Score=74.59 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=68.2
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIE 253 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 253 (944)
.++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++.... ... ..+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~-~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQG-EFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTS-CCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCC-CEE-EECCCCCcc---------
Confidence 578999999999887754322 1234689999999999999999874211 111 223 665543221
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccc
Q 042336 254 ALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRK 318 (944)
Q Consensus 254 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 318 (944)
.... ..+... ..-.|+||++..-.......+...+.......+||.||..
T Consensus 66 ---------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 111111 2347899999665544455566666555556678887764
No 191
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.87 E-value=8.1e-05 Score=80.72 Aligned_cols=187 Identities=13% Similarity=0.083 Sum_probs=101.6
Q ss_pred CccccchhHHHHHHHHhccC----Cc--ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCE----NS--EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
..++|.+..++.+.+.+... .. ......+.+.|+|.+|+|||+||+.+++. ... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc---
Confidence 46899999999998877421 00 00123457889999999999999999873 222 223444432111
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCc-----------cChhhhHhhhccC----CCCc
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDY-----------SKWEPFHNCLMNC----LHGS 310 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~----~~gs 310 (944)
.. ..........+.. .-..++.+|+||++..-.. .....+...+... ..+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 0011112222222 2245678999999932100 1122333333321 2344
Q ss_pred EEEEEccchh-hhhcc--cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCC-ChhhHHHHhh
Q 042336 311 KILVTTRKET-VARMM--ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKG-LPLAAKTIGS 384 (944)
Q Consensus 311 ~iivTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~~~~~ 384 (944)
.||.||.... +.... .....+.+...+.++..+++...+........ .+....|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665665432 21111 11346788888899998988877643221111 3456778888888 4555555543
No 192
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.86 E-value=0.0002 Score=79.17 Aligned_cols=314 Identities=11% Similarity=0.047 Sum_probs=167.5
Q ss_pred ceEEEEEEeCCCCcc-hhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhccc
Q 042336 532 ELRHSMLVFGNEASF-PVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLI 609 (944)
Q Consensus 532 ~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~ 609 (944)
.+..+.+.. .+..+ ...+.+|++|+++.+..+-... -...|.++..|+.+.+..+ +..+. .++.++.
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I-----~~~aF~~c~~L~~i~~p~~-----l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSVKMI-----GRCTFSGCYALKSILLPLM-----LKSIGVEAFKGCD 140 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTCCEE-----CTTTTTTCTTCCCCCCCTT-----CCEECTTTTTTCC
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCceEc-----cchhhcccccchhhcccCc-----eeeecceeeeccc
Confidence 345554432 23332 3457789999999886542111 1233788888888776544 33332 3344454
Q ss_pred ccceeccCcccccccC-ccccCCCcccEEEecCccCCcccCc-ccccCCCCceeeccccccccccc-cccCCCCCCcCCc
Q 042336 610 HLRYFKLHWLEIKELP-DTCCELFNLQTIEIEGCYNLNRLPQ-GVGKLVNLRHLIFDVNFVEYMPK-GIERLTCLRTLSE 686 (944)
Q Consensus 610 ~Lr~L~Ls~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~~ 686 (944)
.+....... +..++ ..+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++. .+..++.|+.+..
T Consensus 141 ~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 141 FKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred ccccccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 443333222 22222 34778889999998764 344443 4677888888888543 344443 3566677766641
Q ss_pred eEecccccCCCCcccccccCcCcccCCceEEEcCccCcCChhhhhhhhcccCCCcCcEEEEeecCCCCchhhhhhhcCCC
Q 042336 687 FVVVSRSDKYGNKACNLGGLRQLNHLRGSLRIRGLRNVTDVHEAKIVELEKKKNLLHLSLSFVKRTDEEDEEEEVTEGKN 766 (944)
Q Consensus 687 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 766 (944)
. .+. . ..+...-....|+ .+.+.. .+..+. ...+..+..|+.+.+..+...-
T Consensus 216 ~----~~~-~-~i~~~~~~~~~l~----~i~ip~--~~~~i~---~~~f~~~~~l~~~~~~~~~~~i------------- 267 (394)
T 4fs7_A 216 P----NSL-Y-YLGDFALSKTGVK----NIIIPD--SFTELG---KSVFYGCTDLESISIQNNKLRI------------- 267 (394)
T ss_dssp C----TTC-C-EECTTTTTTCCCC----EEEECT--TCCEEC---SSTTTTCSSCCEEEECCTTCEE-------------
T ss_pred C----CCc-e-EeehhhcccCCCc----eEEECC--Cceecc---cccccccccceeEEcCCCccee-------------
Confidence 1 100 0 0111111222332 222211 111111 1234566778887775441100
Q ss_pred cccHHHHhccCCCCCCCceEEEeeCCCCCCC-hhhhcCCCccEEEeeccCCCCcCCC--CCCCCCcceeeecccccceEe
Q 042336 767 EVSHEAICEALRPPPNLESLDVWKYRGETLP-SWIMSLNKLKKLELSFCNKFEIMPP--LGKLPSLELLEVFALQSVKRV 843 (944)
Q Consensus 767 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~ 843 (944)
....+..+..++.+.+.... ++ ..+..+.+|+.+.+..+ ...++. +..+.+|+.+.|.. .++.+
T Consensus 268 ------~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I 334 (394)
T 4fs7_A 268 ------GGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEI 334 (394)
T ss_dssp ------CSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEE
T ss_pred ------eccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEE
Confidence 01234456677776654432 22 23446888999988754 333433 67788899888853 24444
Q ss_pred CccccCccCccCccccccccccccccccccccCCccccCcccceeeecccccccCCCCCCCCCCCcCeE
Q 042336 844 GDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPHQILGNTTLQML 912 (944)
Q Consensus 844 ~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 912 (944)
+. .+|.++..|+-..++.. ........+..+++|+.+.|..+ ++.+...+.++++|+.+
T Consensus 335 ~~-------~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 335 GK-------RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CT-------TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred hH-------HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 32 35666666666666543 22233445678899999998753 44444455666666654
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.83 E-value=0.00017 Score=77.96 Aligned_cols=185 Identities=17% Similarity=0.119 Sum_probs=98.9
Q ss_pred CccccchhHHHHHHHHhccC----C--cccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCE----N--SEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+++|.+..++.|.+.+..+ . .......+-+.|+|++|+|||+||+.+++. ....| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46899999999998876311 0 001122345789999999999999999983 22222 223222 1
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHH-HHhcCCceEEEeCCCCccCcc-----------ChhhhHhhhcc---CCCCcE
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHIC-LSITGKKFLLVLDDVWTEDYS-----------KWEPFHNCLMN---CLHGSK 311 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~~-----------~~~~l~~~l~~---~~~gs~ 311 (944)
+. ..... ..+.....+. ..-..++.+|+||++..-... ....+...+.. ...+..
T Consensus 120 l~--------~~~~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 LV--------SKWMG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH--------SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred Hh--------hhhcc--hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 11111 1122222222 223467889999999532111 01223333321 124555
Q ss_pred EEEEccchhh-hhcc--cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC-hhhHHHH
Q 042336 312 ILVTTRKETV-ARMM--ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL-PLAAKTI 382 (944)
Q Consensus 312 iivTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~ 382 (944)
||.||..... ...+ .-...+.+...+.++..+++..+......... ......|++.+.|. +-.|..+
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 6666654321 1111 22356778888999999999887643221111 33456788888884 4444444
No 194
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.82 E-value=0.00049 Score=73.24 Aligned_cols=187 Identities=19% Similarity=0.153 Sum_probs=99.5
Q ss_pred CccccchhHHHHHHHHhccC----C--cccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCE----N--SEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+++|.+..++.|.+.+..+ . .......+-+.++|++|+|||+||+.+++... ... .+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHH----
Confidence 46899999888888766311 0 00112346788999999999999999998320 111 2233333211
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccCc------cC-----hhhhHhhhcc---CCCCcE
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTEDY------SK-----WEPFHNCLMN---CLHGSK 311 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~------~~-----~~~l~~~l~~---~~~gs~ 311 (944)
.... ...+.....+.. .-..++.+|++|++..-.. .. ...+...+.. ...+..
T Consensus 84 ----------~~~~--g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 ----------SKWL--GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ----------CSSC--CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ----------hhhh--hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 0000 111222222222 2246788999999953210 00 1112222221 123455
Q ss_pred EEEEccchhh-hhcc--cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC-hhhHHHHh
Q 042336 312 ILVTTRKETV-ARMM--ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL-PLAAKTIG 383 (944)
Q Consensus 312 iivTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~~ 383 (944)
||.||..... ...+ .-...+.+...+.++..+++..+......... ......|++.+.|. +-.+..+.
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5556654321 1111 12356788888888888999887633221111 34456788889887 44455443
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.79 E-value=3.3e-05 Score=74.81 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=65.1
Q ss_pred chhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhC
Q 042336 178 RDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEG 257 (944)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 257 (944)
.....+.+.+++..-.. .....+.|+|.+|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 34445555555533221 234678999999999999999998842211121 233433 44555555444432
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChh--hhHhhhccC-CCCcEEEEEccc
Q 042336 258 SAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWE--PFHNCLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 318 (944)
.... .....+ .+.-+|||||++......|. .+...+... ..|..||+||..
T Consensus 89 ~~~~-----~~~~~~-----~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKTV-----LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHHH-----HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHHh-----cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2111 222222 24668999999743333343 233333322 246778888864
No 196
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.78 E-value=1.9e-05 Score=78.20 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=62.1
Q ss_pred HHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC
Q 042336 181 EKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP 260 (944)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 260 (944)
.++.+.+++..... ......+.|+|.+|+||||||+.+++. .......++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44555555543321 112267889999999999999999984 33333456666553 344443332211
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhh--hHh-hhccC-CCCcEEEEEccc
Q 042336 261 NLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEP--FHN-CLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 261 ~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 318 (944)
.........+. . .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 --~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222333222 2 2399999996644444432 222 22221 245578888863
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.76 E-value=0.00037 Score=73.55 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=98.3
Q ss_pred CccccchhHHHHHHHHhccCCc------ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS------EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
..++|.+..++.+.+.+..+.. .-....+.+.|+|++|+||||+|+.+++. .... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4689999999999887742100 00112457889999999999999999883 2222 23344333111
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHH-HHhcCCceEEEeCCCCccCcc-------C----hhhhHhhhccC-----CCC
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHIC-LSITGKKFLLVLDDVWTEDYS-------K----WEPFHNCLMNC-----LHG 309 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~~-------~----~~~l~~~l~~~-----~~g 309 (944)
.. ..+.......+. .....++.+|++|++..-... . ...+...+... +.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 111222222222 223456789999999432100 0 01122222211 134
Q ss_pred cEEEEEccchhh-hhcc--cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh-hHHHH
Q 042336 310 SKILVTTRKETV-ARMM--ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL-AAKTI 382 (944)
Q Consensus 310 s~iivTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 382 (944)
..||.||..... .... .-...+.+...+.++...++...+........ .+....+++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 556667765321 1110 11246677777788888888776533221111 3455678888988875 44444
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=0.00016 Score=75.90 Aligned_cols=149 Identities=13% Similarity=0.010 Sum_probs=93.4
Q ss_pred cchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcc-ccccCceeEEEEeCC-CCCHHHHHHHHHHH
Q 042336 177 GRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDND-VINNFEKRIWVSVSD-PFDEYRVAKAIIEA 254 (944)
Q Consensus 177 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~ 254 (944)
|-++.++.+...+..+ ......++|++|+||||+|+.+.+... .........++..+. ...++. .+++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3445566777777432 256888999999999999999976310 111122334444432 222222 2334444
Q ss_pred hhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch-hhhhcccccceEeC
Q 042336 255 LEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE-TVARMMESIDILII 333 (944)
Q Consensus 255 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~l 333 (944)
+.... ..+++-++|+|++..-+....+.+...+....+.+.+|++|.+. .+....... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 33211 13567799999997666566777888887766778888777543 333333334 9999
Q ss_pred CCCChHHHHHHHHHHh
Q 042336 334 KELSELECWSLFKRFA 349 (944)
Q Consensus 334 ~~L~~~~~~~lf~~~~ 349 (944)
.++++++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998775
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=2.9e-05 Score=79.43 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=51.9
Q ss_pred hhcCCcccEEEeccCCCcccccccchhhhcccccceeccCcccccccCccccCCC--cccEEEecCccCCcccCc-----
Q 042336 578 FNQFTCLRALKITRNSKENSIYEIPKEIQKLIHLRYFKLHWLEIKELPDTCCELF--NLQTIEIEGCYNLNRLPQ----- 650 (944)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lP~~i~~L~--~L~~L~L~~~~~l~~lp~----- 650 (944)
..+++.|++|+|++|.... +..+|..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|..-..+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~-l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCC-CGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCC-CccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 3567788888888887322 334456667788888888888877755 2344444 777777777763333331
Q ss_pred --ccccCCCCceee
Q 042336 651 --GVGKLVNLRHLI 662 (944)
Q Consensus 651 --~i~~L~~L~~L~ 662 (944)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 244556666654
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.69 E-value=6.3e-05 Score=91.65 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=80.7
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcc---ccccC-c-eeEEEEeCCCCCHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDND---VINNF-E-KRIWVSVSDPFDEYRV 247 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~-~~~wv~vs~~~~~~~~ 247 (944)
..++||+.+++++.+.+.... ..-+.++|.+|+||||+|+.+++... +.... . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 358999999999999996432 23468999999999999999987311 11111 1 233343322100
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHh-c-CCceEEEeCCCCccC--------ccChhhhHhhhccCCCCcEEEEEcc
Q 042336 248 AKAIIEALEGSAPNLGELNSLLQHICLSI-T-GKKFLLVLDDVWTED--------YSKWEPFHNCLMNCLHGSKILVTTR 317 (944)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTtr 317 (944)
+ .....+.......+...+ . +++.+|++|++..-. ....+.+...+..+ +..+|.+|.
T Consensus 240 ---------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred ---------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 0 000112222223332222 2 468899999995421 11122244444332 334555554
Q ss_pred chhh-----hhcc-cccceEeCCCCChHHHHHHHHHH
Q 042336 318 KETV-----ARMM-ESIDILIIKELSELECWSLFKRF 348 (944)
Q Consensus 318 ~~~v-----~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 348 (944)
.... ...+ .....+.+.+.+.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 3332 1111 12346889999999999998754
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.68 E-value=0.00046 Score=75.88 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=97.4
Q ss_pred CccccchhHHHHHHHHhccCCc------ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS------EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+++|.+..++.+.+.+..... ......+-+.|+|.+|+|||+||+.+++. .... .+.++++.-.. .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~--~ 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS--K 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc--c
Confidence 4689999999999988732100 00112356889999999999999999873 2222 23333332111 0
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccC-------ccChh----hhHhhhcc----CCCCcE
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTED-------YSKWE----PFHNCLMN----CLHGSK 311 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-------~~~~~----~l~~~l~~----~~~gs~ 311 (944)
. .. .....+...+...-...+.+|+||++..-. ..... .+...+.. ......
T Consensus 188 ~------------~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 Y------------VG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred c------------cc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 00 011111122222223456799999994310 00011 22222221 122345
Q ss_pred EEEEccchh-hhhcc-c-ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChh-hHHHH
Q 042336 312 ILVTTRKET-VARMM-E-SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPL-AAKTI 382 (944)
Q Consensus 312 iivTtr~~~-v~~~~-~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 382 (944)
||.||.... +.... . ....+.+...+.++..+++...+........ .+....|++.+.|..- ++..+
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 565665432 11111 1 1246788889999999999887644322222 3456678888888654 44444
No 202
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.61 E-value=3.5e-05 Score=71.30 Aligned_cols=111 Identities=6% Similarity=0.033 Sum_probs=62.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.++++. -....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~--~~~~~----- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE--YLIDM----- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--HHHHC-----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--CChHh-----
Confidence 3578999998888887753221 112377999999999999999988422 222222221 01111
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccC-CCCcEEEEEccc
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNC-LHGSKILVTTRK 318 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 318 (944)
...+.+. .+.-.|+||++..-.......+...+... ..+.+||.||..
T Consensus 67 ----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 22357899999665444444555555543 345678888753
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.0031 Score=69.47 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=66.1
Q ss_pred hccCCC-CeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCcccccccCc
Q 042336 549 FMFNAK-KLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKELPD 626 (944)
Q Consensus 549 ~~~~~~-~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lP~ 626 (944)
.+.+++ .|+++.+-..-.. .-...|.+|.+|+.+.+..+.- ..+..+. .++..+..|+.+.+..+ +..++.
T Consensus 58 aF~~~~~~L~sI~iP~svt~-----Ig~~AF~~C~~L~~i~~~~n~p-~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTVTE-----IGSNAFYNCTSLKRVTIQDNKP-SCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp TTTTCCSCCCEEEECTTCCE-----ECTTTTTTCTTCCEEEEGGGCC-CCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred hccCCCCcCEEEEECCCeeE-----EhHHHhhCCccCceEeecCCCC-CeeeEechhhchhcccceeeccCCc-cceehh
Confidence 344553 5888887543111 1123388899999998876531 1144444 45667888888877654 444543
Q ss_pred -cccCCCcccEEEecCccCCcccC-cccccCCCCceeeccc
Q 042336 627 -TCCELFNLQTIEIEGCYNLNRLP-QGVGKLVNLRHLIFDV 665 (944)
Q Consensus 627 -~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 665 (944)
.+..+.+|+.+.+... +..++ ..+..+.+|+.+.+..
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhcccccccccce--eeeecccceecccccccccccc
Confidence 3677888888888653 33333 3456777888877743
No 204
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.56 E-value=0.00013 Score=82.13 Aligned_cols=145 Identities=16% Similarity=0.220 Sum_probs=78.5
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccccc-----C-ce-eEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINN-----F-EK-RIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----F-~~-~~wv~vs~~~~~~ 245 (944)
..++||+.+++.+...+.... ..-+.|+|.+|+|||++|+.+++. +... . .. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 359999999999999996532 234579999999999999999873 2111 1 11 1222222
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhhh--
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVAR-- 323 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-- 323 (944)
....+. .......+.. ..-..++.+|++|. ..+....+...+.. ...++|.+|.......
T Consensus 246 -------~~~~g~--~e~~~~~~~~---~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGE--FEDRLKKVMD---EIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHHHHH---HHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred -------ccccch--HHHHHHHHHH---HHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 000000 0112222222 22245678999991 11222334333332 2345666665443111
Q ss_pred -----cccccceEeCCCCChHHHHHHHHHHh
Q 042336 324 -----MMESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 324 -----~~~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
......++.+.+.+.++..+++....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11123468999999999999998754
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.55 E-value=0.0012 Score=73.61 Aligned_cols=187 Identities=17% Similarity=0.155 Sum_probs=97.7
Q ss_pred CccccchhHHHHHHHHhccC----C--cccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCE----N--SEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+++|.+..++.+.+.+..+ . .......+-+.|+|++|+|||+||+.+++.. ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH----
Confidence 46899999999998876311 0 0011234678899999999999999999832 112233333221
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc-------cChhhhHh----hhcc---CCCCcEE
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDY-------SKWEPFHN----CLMN---CLHGSKI 312 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-------~~~~~l~~----~l~~---~~~gs~i 312 (944)
+. ....+. .......+.. ..-..++.+|+||++..-.. .....+.. .+.. ...+..|
T Consensus 204 l~----~~~~g~--~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LV----SKWLGE--SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HH----hhhcch--HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11 111111 1112222222 22245788999999953210 11112222 2211 1245566
Q ss_pred EEEccchhhhh-cc--cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC-hhhHHHH
Q 042336 313 LVTTRKETVAR-MM--ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL-PLAAKTI 382 (944)
Q Consensus 313 ivTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~ 382 (944)
|.||....... .+ .....+.+...+.++...+|..+......... ......|++.+.|. +-.|..+
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 76775442211 11 11346778888888888888887633211111 33456788888884 4444443
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.54 E-value=0.00032 Score=74.66 Aligned_cols=135 Identities=16% Similarity=0.254 Sum_probs=73.8
Q ss_pred ccccchhHHHHHHHHhccCC---cccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCEN---SEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
.++|.+..++.+...+.... .........+.++|.+|+|||++|+.+++. ....-...+.+.++....... .
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~-- 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-V-- 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-H--
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-H--
Confidence 47899998888888775421 001123468899999999999999999873 222112345556554332211 1
Q ss_pred HHHHhhCCCCCC---CCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEc
Q 042336 251 IIEALEGSAPNL---GELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTT 316 (944)
Q Consensus 251 i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 316 (944)
..+.+..... .....+...+. ....-+++||++..........+...+.... ....||.||
T Consensus 93 --~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 93 --SRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp --HHHHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred --HHhcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1111211111 11112222222 2344699999996655555556666654332 234477777
Q ss_pred cc
Q 042336 317 RK 318 (944)
Q Consensus 317 r~ 318 (944)
..
T Consensus 168 n~ 169 (311)
T 4fcw_A 168 NL 169 (311)
T ss_dssp ST
T ss_pred cc
Confidence 64
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.52 E-value=0.0016 Score=68.70 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=88.5
Q ss_pred CccccchhHHHHHHHHhccCCc-------ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS-------EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.+++|.+..++.+.+.+...-. -+-...+.+.|+|++|+|||+||+.+++. .... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 4589999988888877642100 00123456889999999999999999983 2222 22232 22
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc--------------cChhhhHhhhccC--CCC
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDY--------------SKWEPFHNCLMNC--LHG 309 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~~~--~~g 309 (944)
.+. ....+... ..+...+.......+.+|++|++..-.. .....+...+... ..+
T Consensus 84 ~l~----~~~~g~~~-----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELL----TMWFGESE-----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHH----HHHHTTCT-----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHH----hhhcCchH-----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222 22222111 1122233333346789999999942100 0123333333321 235
Q ss_pred cEEEEEccchhhh-hc-cc---ccceEeCCCCChHHHHHHHHHHhc
Q 042336 310 SKILVTTRKETVA-RM-ME---SIDILIIKELSELECWSLFKRFAF 350 (944)
Q Consensus 310 s~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~ 350 (944)
..||.||...... .. .. -...+.+...+.++-.+++....-
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 5677777654322 11 11 235788999999998898877653
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.42 E-value=0.0012 Score=70.08 Aligned_cols=155 Identities=12% Similarity=0.111 Sum_probs=83.5
Q ss_pred CccccchhHHHHHHHHhccC--C-c-----ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCC-
Q 042336 173 SEVRGRDEEKNTLKTKLLCE--N-S-----EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFD- 243 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~--~-~-----~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 243 (944)
..++|.+..++.+...+... . . ........+.++|.+|+|||++|+.+.+. ... ..+.++++...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 45899999999998877531 0 0 00012346789999999999999999873 221 233444433211
Q ss_pred ------HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccC------------hhhhHhhhcc
Q 042336 244 ------EYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSK------------WEPFHNCLMN 305 (944)
Q Consensus 244 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~------------~~~l~~~l~~ 305 (944)
....+..+.....+ .+.. .+.+.+|+||++..-.... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11222222221100 0000 1236799999996543332 3445444443
Q ss_pred C----------CCCcEEEEEcc----ch-hhhhcc-cc-cceEeCCCCChHHHHHHHHH
Q 042336 306 C----------LHGSKILVTTR----KE-TVARMM-ES-IDILIIKELSELECWSLFKR 347 (944)
Q Consensus 306 ~----------~~gs~iivTtr----~~-~v~~~~-~~-~~~~~l~~L~~~~~~~lf~~ 347 (944)
. ..+..+|.|+. .. .+...+ .. ...+.+.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 2 12445565542 11 111111 11 24689999999999988875
No 209
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.41 E-value=0.0012 Score=70.85 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=93.8
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++|.+..++.+...+..... .......+.++|++|+||||||+.+++. ....|. ..+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~-----~~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH-----VTSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE-----EEETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE-----EEechHh---------
Confidence 4578888777777666643210 1123457899999999999999999883 222211 1111100
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC------------------CCcEEE-
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL------------------HGSKIL- 313 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ii- 313 (944)
.....+.. +...+ .++-++++|++..-.....+.+...+.... +...++
T Consensus 88 ----------~~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 88 ----------VKQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ----------CSHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ----------cCHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 00111111 11122 234577788874332222333333322211 011222
Q ss_pred EEccchhhhhcccc--cceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCChhhHHHH
Q 042336 314 VTTRKETVARMMES--IDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLPLAAKTI 382 (944)
Q Consensus 314 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 382 (944)
.|++...+...+.. ...+.+++.+.++-.+++.+.+-......+ ++.+..|++.++|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~----~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE----DAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHhcCCChHHHHHH
Confidence 24443322221111 235789999999999999887632221112 556788999999999765443
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.40 E-value=0.0013 Score=73.86 Aligned_cols=185 Identities=10% Similarity=0.062 Sum_probs=99.3
Q ss_pred CccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
..++|.+..++++.+++...... +....+-+.|+|.+|+|||++|+.+++. ....| +.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEchH-----
Confidence 35899999999998877532000 0123345889999999999999999873 22222 3333211
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc-----------cChhhhHhhhccC--CCCcEE
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDY-----------SKWEPFHNCLMNC--LHGSKI 312 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~--~~gs~i 312 (944)
+. ..... .........+.....+++.+|+||++..-.. .....+...+... ..+.+|
T Consensus 274 -l~--------~~~~g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -IM--------SKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -HH--------TSCTT-HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -hh--------hhhcc-hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 11100 0111222333334456788999999932100 1122344344322 234566
Q ss_pred EEEccchh-hhhcc----cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC-hhhHHHH
Q 042336 313 LVTTRKET-VARMM----ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL-PLAAKTI 382 (944)
Q Consensus 313 ivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~ 382 (944)
|.||.... +...+ .-...+.+...+.++-.+++..++..... .....+ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 66665442 22221 12346889999999999999887533221 111122 4466667664 4444433
No 211
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.39 E-value=2.5e-05 Score=73.79 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=53.5
Q ss_pred CCccEEEeeccCCCC-cCCCCCCCCCcceeeecccccceEeCccccCccCccCccccccccccccccccccccCCccccC
Q 042336 804 NKLKKLELSFCNKFE-IMPPLGKLPSLELLEVFALQSVKRVGDEFLGIEIVAFPKLKHLIFVDLDEWEEWENEKNDITIM 882 (944)
Q Consensus 804 ~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~l~~~~~~~~~~~~~~~l 882 (944)
.+|+.|++++|...+ .+..+..+++|++|+|++|..++..+ |+.|.- .+ ...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-------------L~~L~~-----------~~---~~~ 113 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-------------LERLSQ-----------LE---NLQ 113 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-------------HHHHHT-----------CH---HHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-------------HHHHHh-----------cc---ccc
Confidence 357777777776332 24445677778888887776432111 111000 00 013
Q ss_pred cccceeeecccccccCC-CCCCCCCCCcCeEEEecCcchhh
Q 042336 883 PQLNSLEIRDCHKLKSL-PHQILGNTTLQMLKIYNCRILEE 922 (944)
Q Consensus 883 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~ 922 (944)
++|++|+|++|+.+++- -..+..+++|++|++++|+.+++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 57888888888876641 01234578888888888887654
No 212
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.39 E-value=0.00059 Score=76.62 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=59.6
Q ss_pred eEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc----------c----chhhhh-cccccceEeCCCCChHHHHHHH
Q 042336 281 FLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT----------R----KETVAR-MMESIDILIIKELSELECWSLF 345 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt----------r----~~~v~~-~~~~~~~~~l~~L~~~~~~~lf 345 (944)
-++++|++..-+.+..+.+...+...... .+|+.| . ...+.. .......+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999766666677777777665444 344344 2 111111 1122345799999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhh-CCChhhHHHH
Q 042336 346 KRFAFFGRSPFECKQLEEIGRKIVGKC-KGLPLAAKTI 382 (944)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~GlPlai~~~ 382 (944)
...+-....... ++....|++.+ +|.|..+..+
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHH
Confidence 877532111112 45567788888 7888765544
No 213
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.38 E-value=0.00092 Score=73.70 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=70.2
Q ss_pred hhhccCCCCeeEEEEecC-CcccccchhHHHHhhcCCcccEEEeccCCCcccccccc-hhhhcccccceeccCccccccc
Q 042336 547 PVFMFNAKKLRSLLIHNI-PIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYEIP-KEIQKLIHLRYFKLHWLEIKEL 624 (944)
Q Consensus 547 ~~~~~~~~~Lr~L~l~~~-~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~l 624 (944)
...+.+|.+|+++.+..+ |... ...-...|.++..|+.+.+..+ +..++ ..+..+..|+.+.+..+ +..+
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l--~~Ig~~aF~~c~~L~~i~~~~~-----~~~I~~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCV--KKIGRQAFMFCSELTDIPILDS-----VTEIDSEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCC--CEECTTTTTTCTTCCBCGGGTT-----CSEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred HHHhhCCccCceEeecCCCCCee--eEechhhchhcccceeeccCCc-----cceehhhhhhhhcccccccccce-eeee
Confidence 345778999999998764 2111 1111234788888888777654 44554 45678899999999754 3444
Q ss_pred Cc-cccCCCcccEEEecCccCCcccCcccccCCCCceeecc
Q 042336 625 PD-TCCELFNLQTIEIEGCYNLNRLPQGVGKLVNLRHLIFD 664 (944)
Q Consensus 625 P~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 664 (944)
++ .+..+.+|+.+.+..+ +..+....-...+|+.+.+.
T Consensus 152 ~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEEC
T ss_pred cccceecccccccccccce--eeEeccccccccceeEEEEC
Confidence 43 4778889999998764 55555444344677777763
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.36 E-value=3.9e-05 Score=78.41 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=61.0
Q ss_pred hcccccceeccCccccccc---CccccCCCcccEEEecCccCCcccCcccccCC--CCceeecccccccc-cc-------
Q 042336 606 QKLIHLRYFKLHWLEIKEL---PDTCCELFNLQTIEIEGCYNLNRLPQGVGKLV--NLRHLIFDVNFVEY-MP------- 672 (944)
Q Consensus 606 ~~l~~Lr~L~Ls~~~i~~l---P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~-lp------- 672 (944)
.++++|+.|+|++|.|..+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|++..|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5689999999999998754 4667899999999999998 6665 3455565 99999998887653 33
Q ss_pred ccccCCCCCCcCCc
Q 042336 673 KGIERLTCLRTLSE 686 (944)
Q Consensus 673 ~~i~~l~~L~~L~~ 686 (944)
..+..+++|+.|++
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 12567788888873
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.33 E-value=0.00032 Score=72.64 Aligned_cols=131 Identities=11% Similarity=0.023 Sum_probs=66.6
Q ss_pred ccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIE 253 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 253 (944)
.++|.+..+.++.+.+..... ....+.|+|.+|+|||++|+.+++... ..-...+.++++.-. ...+..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~~--~~~~~~--- 75 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN--ENLLDS--- 75 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGSC--HHHHHH---
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCCC--hhHHHH---
Confidence 478999998888776653221 123577999999999999999987421 111123455555432 222221
Q ss_pred HhhCCCCCCCC-H-HHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccC-----------CCCcEEEEEccc
Q 042336 254 ALEGSAPNLGE-L-NSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNC-----------LHGSKILVTTRK 318 (944)
Q Consensus 254 ~l~~~~~~~~~-~-~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 318 (944)
.+.+....... . ......+. ....-+|+||++..-.......+...+... ....+||.||..
T Consensus 76 ~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred HhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 22221111000 0 00000111 123458999999654443444455555432 134578888764
No 216
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=0.00014 Score=70.59 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=83.9
Q ss_pred CceEEEEEEeC-CCCc-----chhhccCCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCccc-ccccch
Q 042336 531 EELRHSMLVFG-NEAS-----FPVFMFNAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENS-IYEIPK 603 (944)
Q Consensus 531 ~~~r~lsl~~~-~~~~-----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~-~~~lp~ 603 (944)
..++++.+..+ .+.. +...+...++|++|++.++.........+...+...+.|++|+|++|..... ...+..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45677777776 6553 3445667899999999998754323334566677889999999999984221 112556
Q ss_pred hhhcccccceecc--Cccccc-----ccCccccCCCcccEEEecCcc
Q 042336 604 EIQKLIHLRYFKL--HWLEIK-----ELPDTCCELFNLQTIEIEGCY 643 (944)
Q Consensus 604 ~i~~l~~Lr~L~L--s~~~i~-----~lP~~i~~L~~L~~L~L~~~~ 643 (944)
.+....+|++|+| ++|.|. .+.+.+...++|++|+|++|.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 7788899999999 888876 356667778999999999987
No 217
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.31 E-value=0.00012 Score=67.94 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=49.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
..++|+|..|+|||||++.++...... . ..++++....-... . +..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~~~~~~-----------------------------~-~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAASMPLT-----------------------------D-AAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETTTSCCC-----------------------------G-GGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHHHhhHH-----------------------------H-HHhCC
Confidence 478999999999999999998842211 1 12556655432211 1 12345
Q ss_pred eEEEeCCCCccCccChhhhHhhhccC-CCCc-EEEEEccc
Q 042336 281 FLLVLDDVWTEDYSKWEPFHNCLMNC-LHGS-KILVTTRK 318 (944)
Q Consensus 281 ~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~ 318 (944)
-+|||||+...+...-+.+...+... ..|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68999999543222222333333221 1233 58888873
No 218
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0023 Score=68.78 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=95.8
Q ss_pred CccccchhHHHHHHHHhccCCc-------ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS-------EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.++.|-++.+++|.+.+.-+-. -+-..++-+.++|++|.|||.||+++++. ....| +.|..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhh---
Confidence 3578999888888776542100 01223466889999999999999999983 33333 334433211
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCccC--------cc------ChhhhHhhhcc--CCC
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTED--------YS------KWEPFHNCLMN--CLH 308 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~--------~~------~~~~l~~~l~~--~~~ 308 (944)
... ..+.+...+.+.. .-...+++|++|++..-- .. ....+...+.. ...
T Consensus 220 -----------sk~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 220 -----------QKY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp -----------CSS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred -----------ccc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 110 1111222222222 224678999999984310 00 01122222221 224
Q ss_pred CcEEEEEccchhhhh-----cccccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh
Q 042336 309 GSKILVTTRKETVAR-----MMESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 309 gs~iivTtr~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 376 (944)
+..||.||...+..+ .-.-+..+.++.-+.++-.++|+.+.-.... ...-++ ..|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCCC
Confidence 456666775443221 1123568888888888888899876533211 111123 45677777753
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.27 E-value=0.0013 Score=79.18 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=85.5
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcc---ccc-cCceeEEE-EeCCCCCHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDND---VIN-NFEKRIWV-SVSDPFDEYRV 247 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~-~F~~~~wv-~vs~~~~~~~~ 247 (944)
..++||+.+++++.+.|.... ..-+.|+|.+|+||||+|+.+++.-. +.. .....+|. .++.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 358999999999999996432 23467999999999999999987311 111 12223321 11110
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHh-cCCceEEEeCCCCccCc-----cChhhhHhhhcc-C-CCCcEEEEEccch
Q 042336 248 AKAIIEALEGSAPNLGELNSLLQHICLSI-TGKKFLLVLDDVWTEDY-----SKWEPFHNCLMN-C-LHGSKILVTTRKE 319 (944)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~-----~~~~~l~~~l~~-~-~~gs~iivTtr~~ 319 (944)
+.+ .....+.+.....+.+.+ ..++.+|++||+..-.. ..-......+.. . ..+.++|.+|...
T Consensus 254 -------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 001 111223333333333333 34578999999953200 001111122211 1 2345666666654
Q ss_pred hhhhcc-------cccceEeCCCCChHHHHHHHHHHh
Q 042336 320 TVARMM-------ESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 320 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
...... .....+.+...+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432111 112368899999999988887653
No 220
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.27 E-value=0.00024 Score=67.07 Aligned_cols=88 Identities=8% Similarity=0.095 Sum_probs=57.7
Q ss_pred CCCCeeEEEEecCCcccccchhHHHHhhcCCcccEEEeccCCCcccccc-cchhhhcc----cccceeccCccc-cc--c
Q 042336 552 NAKKLRSLLIHNIPIEVSSSPVLQVLFNQFTCLRALKITRNSKENSIYE-IPKEIQKL----IHLRYFKLHWLE-IK--E 623 (944)
Q Consensus 552 ~~~~Lr~L~l~~~~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~-lp~~i~~l----~~Lr~L~Ls~~~-i~--~ 623 (944)
...+|+.|+++++... ...+.. +.++++|+.|+|++|.. ++. -...|+.+ ++|++|+|++|. |+ .
T Consensus 59 ~~~~L~~LDLs~~~It---d~GL~~-L~~~~~L~~L~L~~C~~---ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIM---SIGFDH-MEGLQYVEKIRLCKCHY---IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp TCCCEEEEEEESCCCC---GGGGGG-GTTCSCCCEEEEESCTT---CCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CCceEeEEeCcCCCcc---HHHHHH-hcCCCCCCEEEeCCCCc---cCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 3457888888887643 333444 57888899999988863 332 22345543 468888888875 54 1
Q ss_pred cCccccCCCcccEEEecCccCCcc
Q 042336 624 LPDTCCELFNLQTIEIEGCYNLNR 647 (944)
Q Consensus 624 lP~~i~~L~~L~~L~L~~~~~l~~ 647 (944)
+ ..+.++++|++|++++|..++.
T Consensus 132 l-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 I-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp H-HHGGGCTTCCEEEEESCTTCCC
T ss_pred H-HHHhcCCCCCEEECCCCCCCCc
Confidence 2 2356678888888888875553
No 221
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.26 E-value=0.00038 Score=73.35 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=36.3
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..++|+...++++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3588999999988887754322 2234779999999999999999873
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.26 E-value=0.0051 Score=63.05 Aligned_cols=183 Identities=13% Similarity=0.035 Sum_probs=90.8
Q ss_pred CccccchhHHHHHHHHhc---cCCcc---cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLL---CENSE---EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+++|.+..++++.+.+. ....- .....+-+.|+|.+|+||||||+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 468999888777765432 11000 0012334789999999999999999873 22222 3333222100
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc---------c-----ChhhhHhhhcc--CCCCc
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDY---------S-----KWEPFHNCLMN--CLHGS 310 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~---------~-----~~~~l~~~l~~--~~~gs 310 (944)
... ......+...+.......+.++++|++..-.. . ....+...+.. ...+.
T Consensus 84 -----------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -----------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -----------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -----------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 000 11112222333333345678999999832110 0 01112222221 12345
Q ss_pred EEEEEccchh-hhhcc-c---ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCC-ChhhHH
Q 042336 311 KILVTTRKET-VARMM-E---SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKG-LPLAAK 380 (944)
Q Consensus 311 ~iivTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~ 380 (944)
.||.||.... +.... . -...+.+...+.++-.+++....-.... ..... ...++..+.| .+--+.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHHHHH
Confidence 6677776543 21111 1 1346778877888888888776532111 11111 2346667777 554443
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0016 Score=71.19 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHHHhccCCc-------ccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS-------EEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.++.|-++.+++|.+.+.-+-. -+-..++-+.++|++|+|||+||+++++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4688999998888776642100 01234566889999999999999999983
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.0016 Score=78.38 Aligned_cols=156 Identities=15% Similarity=0.244 Sum_probs=88.6
Q ss_pred CccccchhHHHHHHHHhccCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 4589999999888887764321 01223347899999999999999999873 2222233455555432110
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEccc
Q 042336 250 AIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTTRK 318 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 318 (944)
... ....+...++ ....-+|+||++..........+...+..+. ...+||+||..
T Consensus 564 ---------~~~--~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------HST--SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CCC--C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------ccc--ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 0111111221 2334599999996655555566666665421 34588888873
Q ss_pred h-----h----hhhcc-----cc-cceEeCCCCChHHHHHHHHHHh
Q 042336 319 E-----T----VARMM-----ES-IDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 319 ~-----~----v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
. . +...+ .- ..++.+.+++.++-..++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1 11111 11 2478889999888888776653
No 225
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.005 Score=67.37 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=95.6
Q ss_pred CccccchhHHHHHHHHhccCCc-------ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS-------EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.++.|-++.+++|.+.+.-+-. -+-..++-|.++|++|+|||+||+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 4578999888888776542100 01234567889999999999999999983 33232 3344332111
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHH-HHhcCCceEEEeCCCCcc------CccC--------hhhhHhhhcc--CCC
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHIC-LSITGKKFLLVLDDVWTE------DYSK--------WEPFHNCLMN--CLH 308 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~------~~~~--------~~~l~~~l~~--~~~ 308 (944)
.. ..+.......+. ..-...+++|++|++..- .... ...+...+.. ...
T Consensus 254 ------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 ------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00 111122222222 222467899999998421 0000 1122222322 224
Q ss_pred CcEEEEEccchhhhhc-c-c---ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh
Q 042336 309 GSKILVTTRKETVARM-M-E---SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 309 gs~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 376 (944)
+..||.||...+..+. + . -...+.+..-+.++-.++|+.+.-.... ...-++ ..+++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 5577778765443221 1 1 2456778777778888888776533221 111122 45667777753
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.08 E-value=0.00077 Score=81.09 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=79.5
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCc---cccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDN---DVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
..++||+.+++++...|.... ..-+.++|.+|+|||++|+.+++.- .+.......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 359999999999999996532 2236799999999999999998731 0111111111111111
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhhh------
Q 042336 250 AIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVAR------ 323 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~------ 323 (944)
.....+. -...+..+ +......++.+|++|.- ....+.+...+.. ...++|.||.......
T Consensus 245 --g~~~~G~--~e~~l~~~---~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --GTKYRGE--FEDRLKKV---MDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccccch--HHHHHHHH---HHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 0000000 01122222 23333467889999921 1222223333332 2456666665444211
Q ss_pred c-ccccceEeCCCCChHHHHHHHHHHh
Q 042336 324 M-MESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 324 ~-~~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
. ......+.+...+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 0112468999999999999998654
No 227
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0061 Score=66.46 Aligned_cols=176 Identities=15% Similarity=0.102 Sum_probs=93.5
Q ss_pred ccccchhHHHHHHHHhcc----CC---cccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 174 EVRGRDEEKNTLKTKLLC----EN---SEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
++.|-++.+++|.+.+.- ++ .-+-..++-|.++|++|+|||+||+++++. ....| +.|..+.-
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L----- 279 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSEL----- 279 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGG-----
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHh-----
Confidence 578999988888776431 00 001134567889999999999999999983 33333 33333321
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHH-HHhcCCceEEEeCCCCccC------cc--------ChhhhHhhhccC--CCC
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHIC-LSITGKKFLLVLDDVWTED------YS--------KWEPFHNCLMNC--LHG 309 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~------~~--------~~~~l~~~l~~~--~~g 309 (944)
.... ..+.+...+.+. ..-...+++|++|++..-- .. ....+...+... ..+
T Consensus 280 ---------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 280 ---------VQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ---------CCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ---------hccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 1111 111122222222 2334678999999984210 00 011122222211 234
Q ss_pred cEEEEEccchhhhh-cc----cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC
Q 042336 310 SKILVTTRKETVAR-MM----ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL 375 (944)
Q Consensus 310 s~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 375 (944)
..||.||....... .+ .-...+.+..-+.++-.++|+.+.-.... ...-++ ..|++.|.|.
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNS 414 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCC
Confidence 45666775443211 11 22567888888888888899876533211 111122 4567777775
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0026 Score=69.47 Aligned_cols=177 Identities=16% Similarity=0.102 Sum_probs=93.1
Q ss_pred CccccchhHHHHHHHHhcc----CCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLC----ENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.++.|-++.+++|.+.+.. ++- .+-..++-|.++|++|.|||.||+++++. ....| +.++.+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l---- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQL---- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGG----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhh----
Confidence 3578999999888876432 110 01234567889999999999999999983 33232 33333321
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCcc-------Ccc---C----hhhhHhhhccC--CC
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTE-------DYS---K----WEPFHNCLMNC--LH 308 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~-------~~~---~----~~~l~~~l~~~--~~ 308 (944)
.... ..+.+...+.+.. .-...+++|++|++..- ... . ...+...+... ..
T Consensus 252 ----------~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 252 ----------VQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ----------CSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ----------hhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 1111 1111222222222 22356899999998320 000 0 11122222221 23
Q ss_pred CcEEEEEccchhhhhc-c----cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC
Q 042336 309 GSKILVTTRKETVARM-M----ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL 375 (944)
Q Consensus 309 gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 375 (944)
+..||.||...+..+. + .-...+.++.-+.++-.++|+.+.-.... ...-++ ..|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 4456667765433221 1 12457788887888888888765432211 111122 4566777764
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.92 E-value=0.0054 Score=68.18 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=94.1
Q ss_pred CccccchhHHHHHHHHhccCCcc------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+++|.++.++++.+.+..-... +....+-+.|+|++|+|||+||+.+++. ....| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 46899998777776654311000 0011234789999999999999999983 22222 23333321110
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc--------------cChhhhHhhhcc--CCCCc
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDY--------------SKWEPFHNCLMN--CLHGS 310 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~gs 310 (944)
... .........+.....+.+.+|+||++..-.. .....+...+.. ...+.
T Consensus 89 ------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 ------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp ------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred ------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 000 0011222233344456789999999943110 012223322221 12456
Q ss_pred EEEEEccchhhhh-c-cc---ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh
Q 042336 311 KILVTTRKETVAR-M-ME---SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 311 ~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 376 (944)
.||.||...+... . .. -...+.+...+.++-.+++..++-.... ...-. ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 6777776554322 1 11 1347788888888888888776533211 11111 234778888876
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0087 Score=64.54 Aligned_cols=177 Identities=16% Similarity=0.117 Sum_probs=92.8
Q ss_pred CccccchhHHHHHHHHhccC----Cc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCE----NS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.++.|.++.+++|.+.+.-+ +- -+-..++-|.++|++|.|||.||+++++. ....| +.++.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~----- 251 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE----- 251 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG-----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH-----
Confidence 35778998888887765321 00 01234567889999999999999999983 33332 2233222
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcCCceEEEeCCCCcc-------C-cc------ChhhhHhhhcc--CCC
Q 042336 246 RVAKAIIEALEGSAPNLGELNSLLQHICL-SITGKKFLLVLDDVWTE-------D-YS------KWEPFHNCLMN--CLH 308 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~-------~-~~------~~~~l~~~l~~--~~~ 308 (944)
+.... ..+.+...+.+.. .-...+++|++|++..- + .. ....+...+.. ...
T Consensus 252 ---------l~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 252 ---------LIQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ---------GCCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------hhhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 11110 1112222222222 22467899999988421 0 00 01122222221 224
Q ss_pred CcEEEEEccchhhhhc-c-c---ccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCC
Q 042336 309 GSKILVTTRKETVARM-M-E---SIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGL 375 (944)
Q Consensus 309 gs~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 375 (944)
+..||.||...+..+. + . -+..+.+..-+.++-.++|..+.-.... ...-++ ..|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 4566777765443221 1 1 1446777777778888888776532211 111123 4466777764
No 231
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.81 E-value=0.00077 Score=71.07 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=34.2
Q ss_pred hHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc-ccCceeEEEEeC
Q 042336 180 EEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI-NNFEKRIWVSVS 239 (944)
Q Consensus 180 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs 239 (944)
...+.+.+++..... .....+.|+|.+|+|||+||+.+++. .. ..-..+++++++
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEHH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEHH
Confidence 344455556643211 12357889999999999999999984 32 222345566543
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.72 E-value=0.0021 Score=68.91 Aligned_cols=152 Identities=12% Similarity=0.104 Sum_probs=84.8
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
..++|++..++.+...+... .-+.++|.+|+|||+||+.+.+. ....| ..+.++......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCcee
Confidence 45889999999988888643 24789999999999999999873 22222 2344443333333221100
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHhcCC---ceEEEeCCCCccCccChhhhHhhhccC-----------CCCcEEEEEccc
Q 042336 253 EALEGSAPNLGELNSLLQHICLSITGK---KFLLVLDDVWTEDYSKWEPFHNCLMNC-----------LHGSKILVTTRK 318 (944)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 318 (944)
........ .+... ..++++|++...+......+...+... .....|+.|+..
T Consensus 94 ---~~~~~~~~-----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 94 ---YNQHKGNF-----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp ---EETTTTEE-----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred ---ecCCCCce-----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 00000000 00111 258999999655444444455544432 223455555552
Q ss_pred hh------hhhc-ccc-cceEeCCCCChHHHHHHHHHHhcC
Q 042336 319 ET------VARM-MES-IDILIIKELSELECWSLFKRFAFF 351 (944)
Q Consensus 319 ~~------v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~ 351 (944)
.. +... ..- ...+.+.+.+.++-.+++.+.+..
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 22 1111 111 125788888999998888887643
No 233
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.68 E-value=0.025 Score=61.72 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=27.2
Q ss_pred CCCCCCCceEEEeeCCCCCC-ChhhhcCCCccEEEeeccCCCCcCCC--CCCCCCcceeeec
Q 042336 777 LRPPPNLESLDVWKYRGETL-PSWIMSLNKLKKLELSFCNKFEIMPP--LGKLPSLELLEVF 835 (944)
Q Consensus 777 l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~ 835 (944)
+..+.+|+.+.+..+. ..+ ...+..+.+|+.+.+... ...++. +..+++|+.+.+.
T Consensus 236 f~~~~~L~~i~lp~~v-~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 236 FYGMKALDEIAIPKNV-TSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp TTTCSSCCEEEECTTC-CEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEEC
T ss_pred ccCCccceEEEcCCCc-cEeCccccceeehhcccccccc--ceecccccccccccccccccc
Confidence 3345566666654332 112 122335566666666432 222222 4556666666664
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.67 E-value=0.00066 Score=70.33 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=78.8
Q ss_pred CccccchhHHHHHHHHhccCCcc------cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE------EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
..++|.+..++.+.+.+..-... .....+-+.|+|.+|+|||+||+.+++. ....|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHHH---
Confidence 46889988777777655310000 0011223779999999999999999883 222221 111111000
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCceEEEeCCCCccCc---------------cChhhhHhhhccC---CC
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSITGKKFLLVLDDVWTEDY---------------SKWEPFHNCLMNC---LH 308 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~---------------~~~~~l~~~l~~~---~~ 308 (944)
.+.+.. ......+. ......++.+|++||+..-.. .....+...+... ..
T Consensus 83 -------~~~~~~--~~~~~~~~---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 -------MFVGLG--ASRVRDLF---ETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------SCSSSC--SSSSSTTH---HHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------hhcchH--HHHHHHHH---HHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 000100 01111111 222234678999999943211 1122233333221 12
Q ss_pred CcEEEEEccchhhhh-c-cc---ccceEeCCCCChHHHHHHHHHHh
Q 042336 309 GSKILVTTRKETVAR-M-ME---SIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 309 gs~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
...||.||....... . .. -...+.+...+.++..+++...+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 345677776543211 1 11 13467788888888888887665
No 235
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.63 E-value=0.00088 Score=69.41 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=45.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEe--CCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSV--SDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
.+++.|+|++|+||||||.++... .-..++|+++ .+..+. . ..+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 356789999999999999999873 1224567777 332110 0 1345666666666666
Q ss_pred CCceEEEeCCCC
Q 042336 278 GKKFLLVLDDVW 289 (944)
Q Consensus 278 ~k~~LlVlDdvw 289 (944)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 556 99999993
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.53 E-value=0.0035 Score=75.48 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=71.7
Q ss_pred CccccchhHHHHHHHHhccCC---cccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCEN---SEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAK 249 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 249 (944)
..++|.+..++.+...+.... .........+.++|.+|+|||++|+.+.+. .. ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 357899998888877664321 001223457899999999999999999873 21 2334455543221100
Q ss_pred HHHHHhhCCCCCCCCH---HHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEE
Q 042336 250 AIIEALEGSAPNLGEL---NSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVT 315 (944)
Q Consensus 250 ~i~~~l~~~~~~~~~~---~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 315 (944)
...+-+..+..... ..+...+. +....+|+||++........+.+...+..+. ....||.|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 00111111111000 11122222 2446799999996655555556666655431 23457777
Q ss_pred ccc
Q 042336 316 TRK 318 (944)
Q Consensus 316 tr~ 318 (944)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 753
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.46 E-value=0.0051 Score=74.80 Aligned_cols=135 Identities=16% Similarity=0.271 Sum_probs=70.9
Q ss_pred ccccchhHHHHHHHHhccCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHH
Q 042336 174 EVRGRDEEKNTLKTKLLCENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKA 250 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 250 (944)
.++|.+..++.+...+..... ........+.|+|.+|+|||++|+.+.+. ....-...+.++++.-.....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~---- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA---- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGG----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhH----
Confidence 579999998888887754211 01123467889999999999999999873 211111234454443222100
Q ss_pred HHHHhhCCCCC---CCCHHHHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCC-----------CCcEEEEEc
Q 042336 251 IIEALEGSAPN---LGELNSLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCL-----------HGSKILVTT 316 (944)
Q Consensus 251 i~~~l~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 316 (944)
...+.+..+. ......+...+. ....-+|+||++..........+...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHH---HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHH---hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 0011111110 000111222222 1334589999996655555556666665431 244577777
Q ss_pred cc
Q 042336 317 RK 318 (944)
Q Consensus 317 r~ 318 (944)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.41 E-value=0.035 Score=57.91 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.1
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.++.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999983
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.39 E-value=0.0064 Score=69.54 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=34.1
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|.+.-.+.+.+.+.-..-.......++.++|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 35788887777765543211100111345899999999999999999987
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.31 E-value=0.01 Score=58.96 Aligned_cols=84 Identities=19% Similarity=0.155 Sum_probs=50.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhC-----------CC-CCCCCHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEG-----------SA-PNLGELNS 267 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~~ 267 (944)
-.++.|+|.+|+|||||+..+.. ..-..++|++....++...+.. +.+.++. .. ....+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999886 1224678888776566655443 3332211 11 11112233
Q ss_pred HHHHHHHHhcCCceEEEeCCCC
Q 042336 268 LLQHICLSITGKKFLLVLDDVW 289 (944)
Q Consensus 268 ~~~~l~~~l~~k~~LlVlDdvw 289 (944)
....+...+..+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4444444444457799999873
No 241
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.20 E-value=0.045 Score=58.64 Aligned_cols=156 Identities=11% Similarity=-0.039 Sum_probs=98.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICL-SITG 278 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 278 (944)
..+..++|..|.||++.|+.+.+.. ....|+....+.+....++ +++...+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCH---------------------HHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCH---------------------HHHHHHhcCcCCcc
Confidence 4588899999999999998887731 1223432222223322333 333322221 2356
Q ss_pred CceEEEeCCCCc-cCccChhhhHhhhccCCCCcEEEEEccc-------hhhhhcc-cccceEeCCCCChHHHHHHHHHHh
Q 042336 279 KKFLLVLDDVWT-EDYSKWEPFHNCLMNCLHGSKILVTTRK-------ETVARMM-ESIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 279 k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
++-++|+|++.. -+...++.+...+....+++.+|++|.. ..+.... .....+...+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999865 3445677788888766678888777643 2233332 234688899999999988887766
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhCCChhhHHH
Q 042336 350 FFGRSPFECKQLEEIGRKIVGKCKGLPLAAKT 381 (944)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 381 (944)
-..+...+ ++.+..+++.++|.+..+..
T Consensus 156 ~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 156 KQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 43322122 56678899999998887755
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.16 E-value=0.052 Score=64.08 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=93.7
Q ss_pred ccccchhHHHHHHHHhc----cCCc---ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 174 EVRGRDEEKNTLKTKLL----CENS---EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
++.|.++.+++|.+++. .++- -+-..++-|.++|++|+|||+||+++++. ...+| +.|+.++
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~------ 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE------ 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH------
Confidence 47788888777776643 1110 01234567889999999999999999984 33332 3343221
Q ss_pred HHHHHHHHhhCCCCCCCCHHH-HHHHHHHHhcCCceEEEeCCCCcc------CccCh-----hhhHhhhccC--CCCcEE
Q 042336 247 VAKAIIEALEGSAPNLGELNS-LLQHICLSITGKKFLLVLDDVWTE------DYSKW-----EPFHNCLMNC--LHGSKI 312 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdvw~~------~~~~~-----~~l~~~l~~~--~~gs~i 312 (944)
+.... ..+.+. +...+....+..+.+|++|++..- ..... ..+...+... ..+..|
T Consensus 274 --------l~sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 --------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp --------HHSSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred --------hhccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11111 111122 222333344577899999998431 00111 1122222211 234455
Q ss_pred EEEccchh-hhhcc----cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh
Q 042336 313 LVTTRKET-VARMM----ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 313 ivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 376 (944)
|.||...+ +-..+ .-...+.+..-+.++-.++|+.+.-.... ...-+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 66665433 22221 12457888888888888888766422111 11112 345777887764
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.11 E-value=0.022 Score=61.98 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 244
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.95 E-value=0.0048 Score=60.99 Aligned_cols=113 Identities=15% Similarity=0.029 Sum_probs=61.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC--CCCCHHHHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP--NLGELNSLLQHICLSIT 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 277 (944)
-.++.|+|..|+||||++..+... ...+-..++.+...... + ....++.+++.... .....+++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 468899999999999999877763 33333334444333221 1 11233333432211 11233455555555444
Q ss_pred CCce-EEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh
Q 042336 278 GKKF-LLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET 320 (944)
Q Consensus 278 ~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 320 (944)
+.++ +||+|.+..-+.+..+.+ ..+.+ .|..||+|.+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 4444 999999954322222233 33333 2788999988543
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.80 E-value=0.022 Score=60.64 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=54.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-----NLGELNSLLQHIC 273 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 273 (944)
.-+++.|+|.+|+||||||.++... ....=..++|++....++.. .+++++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3479999999999999999998873 22222357788877766654 4555554321 2234555555555
Q ss_pred HHhc-CCceEEEeCCC
Q 042336 274 LSIT-GKKFLLVLDDV 288 (944)
Q Consensus 274 ~~l~-~k~~LlVlDdv 288 (944)
..++ .+.-++|+|.+
T Consensus 133 ~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHTSCCSEEEEECT
T ss_pred HHhhhcCCCeEEehHh
Confidence 4443 55668999987
No 246
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.79 E-value=0.03 Score=53.57 Aligned_cols=115 Identities=19% Similarity=0.113 Sum_probs=64.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC---CCCHHHHHHHHHHHhh----CC-C-CCC-------CC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD---PFDEYRVAKAIIEALE----GS-A-PNL-------GE 264 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~----~~-~-~~~-------~~ 264 (944)
..|.|++-.|.||||.|-...- +..++=..+.++.... ......++..+. +. +. . ... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 4577778888999999976655 2323323445554433 223344443331 00 00 0 000 01
Q ss_pred HHHHHHHHHHHhcCCce-EEEeCCCCc---cCccChhhhHhhhccCCCCcEEEEEccch
Q 042336 265 LNSLLQHICLSITGKKF-LLVLDDVWT---EDYSKWEPFHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 265 ~~~~~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 319 (944)
.........+.+.+.+| |||||++-. -..-..+.+...+........||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 12233444555655555 999999822 12345567777777766778899999975
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.77 E-value=0.01 Score=71.33 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=82.7
Q ss_pred CccccchhHHHHHHHHhccCCc-------ccCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH
Q 042336 173 SEVRGRDEEKNTLKTKLLCENS-------EEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY 245 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 245 (944)
.+++|.+..++++.+++...-. -.-.....+.|+|.+|+||||||+.+... ....| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 4589999988888887743100 00123456899999999999999999873 32222 3333211
Q ss_pred HHHHHHHHHhhCCCCCCCCHH-HHHHHHHHHhcCCceEEEeCCCCccCc------c-----ChhhhHhhhccC--CCCcE
Q 042336 246 RVAKAIIEALEGSAPNLGELN-SLLQHICLSITGKKFLLVLDDVWTEDY------S-----KWEPFHNCLMNC--LHGSK 311 (944)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~~k~~LlVlDdvw~~~~------~-----~~~~l~~~l~~~--~~gs~ 311 (944)
+..... .... .+...+.......+.++++|++...-. . ....+...+... ..+..
T Consensus 274 ---------l~~~~~--g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ---------IMSKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ---------HSSSST--THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ---------hhhhhh--hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 111100 1111 122223333345678999999832110 0 111222222221 23445
Q ss_pred EEEEccchh-hhhccc----ccceEeCCCCChHHHHHHHHHHh
Q 042336 312 ILVTTRKET-VARMME----SIDILIIKELSELECWSLFKRFA 349 (944)
Q Consensus 312 iivTtr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~ 349 (944)
+|.||.... +...+. -...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666665432 211111 12456788888888888887664
No 248
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.75 E-value=0.022 Score=57.14 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=60.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC--------------------
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-------------------- 260 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------------- 260 (944)
.++.|+|.+|+|||||++.+..... ..=..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 5899999999999999999885311 1112456665433 3444443332 3332110
Q ss_pred ---CCCCHHHHHHHHHHHhc-CCc--eEEEeCCCCcc---CccChhhhHhhhccC--CCCcEEEEEccch
Q 042336 261 ---NLGELNSLLQHICLSIT-GKK--FLLVLDDVWTE---DYSKWEPFHNCLMNC--LHGSKILVTTRKE 319 (944)
Q Consensus 261 ---~~~~~~~~~~~l~~~l~-~k~--~LlVlDdvw~~---~~~~~~~l~~~l~~~--~~gs~iivTtr~~ 319 (944)
...+.+++...+...+. .++ .+||+|..-.. +......+...+... ..|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555554544332 233 39999998421 222333444433321 2477788888754
No 249
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.71 E-value=0.16 Score=55.13 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=73.7
Q ss_pred CCCCCCCceEEEeeCCCCCCChhhhcCCCccEEEeeccCCCCcCCC--CCCCCCcceeeecccccceEeCccccCccCcc
Q 042336 777 LRPPPNLESLDVWKYRGETLPSWIMSLNKLKKLELSFCNKFEIMPP--LGKLPSLELLEVFALQSVKRVGDEFLGIEIVA 854 (944)
Q Consensus 777 l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 854 (944)
...+.+|+.+.+......--...+..+.+|+.+.+..+ ...+.. +..+.+|+.+.+.. .++.++. ..
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~-------~a 281 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPY-------LL 281 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECT-------TT
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccc-------cc
Confidence 34456677776644321111223446778888888654 233332 56677888887742 2333322 34
Q ss_pred CccccccccccccccccccccCCccccCcccceeeecccccccCCCC-CCCCCCCcCeEEEec
Q 042336 855 FPKLKHLIFVDLDEWEEWENEKNDITIMPQLNSLEIRDCHKLKSLPH-QILGNTTLQMLKIYN 916 (944)
Q Consensus 855 f~~L~~L~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 916 (944)
|..+..|+-..+++...-......+..+.+|+.+.|.. .++.++. .+.+|.+|+.+.+..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 55566665555554332233344566788999999864 3666654 366788888887743
No 250
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.65 E-value=0.062 Score=55.28 Aligned_cols=126 Identities=15% Similarity=0.151 Sum_probs=64.8
Q ss_pred EEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHh-cCCce
Q 042336 203 ISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSI-TGKKF 281 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~ 281 (944)
+.|+|++|+||||||+.++.... . ..+++..+.-.+. ...........+.+.. ...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~--~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG--L---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT--C---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcC--C---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999987322 1 2344443221110 0000111122222221 34578
Q ss_pred EEEeCCCCccC-------ccC----hhhhHhhhccCC--CCcEEEEEccchhhhhcc-----cccceEeCCCCChHHHHH
Q 042336 282 LLVLDDVWTED-------YSK----WEPFHNCLMNCL--HGSKILVTTRKETVARMM-----ESIDILIIKELSELECWS 343 (944)
Q Consensus 282 LlVlDdvw~~~-------~~~----~~~l~~~l~~~~--~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~ 343 (944)
++++|++.... ... ...+...+..+. ...-++.+|....+.+.. .-...+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 99999984310 001 111222222221 233455566555443221 124567788888888888
Q ss_pred HHHHHh
Q 042336 344 LFKRFA 349 (944)
Q Consensus 344 lf~~~~ 349 (944)
+|+...
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887764
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.51 E-value=0.035 Score=58.87 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=52.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccc----cCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC---------CCCCHH-
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVIN----NFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP---------NLGELN- 266 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~- 266 (944)
.++.|+|.+|+||||||.+++....... .-..++|++....++...+.+ +++.++.... ...+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 5899999999999999988876321111 124688999888777776653 3455543210 111222
Q ss_pred --HHHHHHHHHhc--CCceEEEeCCC
Q 042336 267 --SLLQHICLSIT--GKKFLLVLDDV 288 (944)
Q Consensus 267 --~~~~~l~~~l~--~k~~LlVlDdv 288 (944)
++...+...++ .+.-+||+|.+
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 22333443332 45668888877
No 252
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.50 E-value=0.11 Score=58.12 Aligned_cols=175 Identities=14% Similarity=0.061 Sum_probs=87.9
Q ss_pred CccccchhHHHHHHHHhc---cCCcc---cCCceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHH
Q 042336 173 SEVRGRDEEKNTLKTKLL---CENSE---EQNAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYR 246 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 246 (944)
.+++|.+..++++.+... ....- .-.-.+-+.|+|.+|+||||||+.++.. ... ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH---
Confidence 468999887766665432 11000 0011123889999999999999999973 221 223344332100
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc----CCceEEEeCCCCccC----------ccCh----hhhHhhhccC--
Q 042336 247 VAKAIIEALEGSAPNLGELNSLLQHICLSIT----GKKFLLVLDDVWTED----------YSKW----EPFHNCLMNC-- 306 (944)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdvw~~~----------~~~~----~~l~~~l~~~-- 306 (944)
.. .......+...++ ..+.++++|++..-. ...+ ..+...+..+
T Consensus 103 -----------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 -----------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 00 0111222333232 245799999994211 0111 2222222222
Q ss_pred CCCcEEEEEccchhhhhc-c----cccceEeCCCCChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhhCCCh
Q 042336 307 LHGSKILVTTRKETVARM-M----ESIDILIIKELSELECWSLFKRFAFFGRSPFECKQLEEIGRKIVGKCKGLP 376 (944)
Q Consensus 307 ~~gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 376 (944)
..+..|+.||...+.... . .-...+.+...+.++-.+++..++-.... ..... ...|++.+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-CCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-ChHHH----HHHHHHhcCCCC
Confidence 123455556665544221 1 12457888888888888888766422111 11111 234666777765
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.45 E-value=0.039 Score=58.92 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=40.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccc----cCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVIN----NFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
.-.++.|+|.+|+||||||.+++....... .-..++|++....++...+.. +++.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457899999999999999998876321111 224688999888777776543 344443
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.41 E-value=0.037 Score=59.30 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=53.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-----NLGELNSLLQHICLS 275 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 275 (944)
.++.|.|.+|+||||||.++... ....-..++|++....++.. .++.++.... ...+.+++...+...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 47888999999999999888763 22222468899988776654 2444443211 123456666666555
Q ss_pred hc-CCceEEEeCCC
Q 042336 276 IT-GKKFLLVLDDV 288 (944)
Q Consensus 276 l~-~k~~LlVlDdv 288 (944)
.+ ++.-+||+|.+
T Consensus 148 ~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 148 VRSGAIDVVVVDSV 161 (366)
T ss_dssp HTTTCCSEEEEECT
T ss_pred HhcCCCCEEEEeCh
Confidence 44 44569999988
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.38 E-value=0.024 Score=57.27 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=50.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccc----cCceeEEEEeCCCCCHHHHHHHHHHHhhCCC---------CCCCCHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVIN----NFEKRIWVSVSDPFDEYRVAKAIIEALEGSA---------PNLGELNS 267 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~ 267 (944)
.++.|+|.+|+|||||+..+........ .-..++|+.....++...+. .+++.++... ....+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 5899999999999999998876311111 13568888877765555443 3444443221 01112222
Q ss_pred ---HHHHHHHHhc-CCceEEEeCCCC
Q 042336 268 ---LLQHICLSIT-GKKFLLVLDDVW 289 (944)
Q Consensus 268 ---~~~~l~~~l~-~k~~LlVlDdvw 289 (944)
....+.+.+. .+.-+||+|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2222333332 456788888873
No 256
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.35 E-value=0.041 Score=56.75 Aligned_cols=81 Identities=10% Similarity=0.153 Sum_probs=53.1
Q ss_pred EEEEEeeCCchHHHHHHHHhcCcccccc--CceeEEEEeCCCCCHHHHHHHHHHHhhCCCCC-----CCCHHHH-HHHHH
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINN--FEKRIWVSVSDPFDEYRVAKAIIEALEGSAPN-----LGELNSL-LQHIC 273 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~ 273 (944)
++-|.|.+|+|||||+.++... .... =..++||+..+.++.. .+++++..... ..+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6899999999999999888763 2222 2467899988877764 26667654221 2344554 33332
Q ss_pred HH--h-cCCceEEEeCCCC
Q 042336 274 LS--I-TGKKFLLVLDDVW 289 (944)
Q Consensus 274 ~~--l-~~k~~LlVlDdvw 289 (944)
.. + .++.-+||+|-+-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 4567899999983
No 257
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.33 E-value=0.025 Score=60.05 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=40.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccc---------cC-----ceeEEEEeCCCCCHHHHHHHHHHHhhC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVIN---------NF-----EKRIWVSVSDPFDEYRVAKAIIEALEG 257 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~ 257 (944)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++.+++.+ +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 346899999999999999988875321111 11 4678999888887777664 3455543
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.20 E-value=0.018 Score=56.29 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=33.0
Q ss_pred chhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 178 RDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 178 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
|++.++.+.+.+.... .....+++|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567777888776532 23457999999999999999998876
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.89 E-value=0.062 Score=57.34 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=52.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-----NLGELNSLLQHICL 274 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 274 (944)
-+++.|+|.+|+||||||.++... ....=..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 358999999999999999888763 22222467899988766653 2444543211 12345555555544
Q ss_pred Hhc-CCceEEEeCCC
Q 042336 275 SIT-GKKFLLVLDDV 288 (944)
Q Consensus 275 ~l~-~k~~LlVlDdv 288 (944)
..+ .+.-+||+|.+
T Consensus 134 l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 134 LVRSGALDIIVIDSV 148 (349)
T ss_dssp HHTTTCCSEEEEECG
T ss_pred HHhcCCCCEEEEcCh
Confidence 443 45679999988
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.85 E-value=0.098 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|+|..|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.80 E-value=0.046 Score=58.43 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=51.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-----NLGELNSLLQHICL 274 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 274 (944)
-+++.|.|.+|+||||||.++... ....-..++|++....++... +..++.... ...+.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 358999999999999999888763 222223688999887776442 344543211 11234444444443
Q ss_pred Hh-cCCceEEEeCCC
Q 042336 275 SI-TGKKFLLVLDDV 288 (944)
Q Consensus 275 ~l-~~k~~LlVlDdv 288 (944)
.. ..+.-+||+|.+
T Consensus 136 l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 136 LARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHTCCSEEEEECG
T ss_pred HHhccCCCEEEEcCH
Confidence 33 245568999988
No 262
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.72 E-value=0.029 Score=53.94 Aligned_cols=118 Identities=9% Similarity=0.064 Sum_probs=69.9
Q ss_pred hccCCCCeeEEEEecC-CcccccchhHHHHhhcCCcccEEEeccCCCccc-ccccchhhhcccccceeccCccccc----
Q 042336 549 FMFNAKKLRSLLIHNI-PIEVSSSPVLQVLFNQFTCLRALKITRNSKENS-IYEIPKEIQKLIHLRYFKLHWLEIK---- 622 (944)
Q Consensus 549 ~~~~~~~Lr~L~l~~~-~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~-~~~lp~~i~~l~~Lr~L~Ls~~~i~---- 622 (944)
.+.+.+.|++|.+.++ .........+-+.+..-..|+.|+|++|..... ...+-..+..-..|+.|+|++|.|.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445677888888764 432211233445566677888888888873221 1123345556677888888888875
Q ss_pred -ccCccccCCCcccEEEecCccC--Cc-----ccCcccccCCCCceeecccc
Q 042336 623 -ELPDTCCELFNLQTIEIEGCYN--LN-----RLPQGVGKLVNLRHLIFDVN 666 (944)
Q Consensus 623 -~lP~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~ 666 (944)
.+-+.+..-..|++|+|++|.. +. .+...+..=+.|+.|+++.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3445555666788888876531 22 12233444566777777544
No 263
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.66 E-value=0.19 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|+|..|+|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.58 E-value=0.083 Score=55.18 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|+|.+|+|||||++.++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999988763
No 265
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.58 E-value=0.19 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999865
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.57 E-value=0.34 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+.+|.++|.+|+||||++.+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.38 E-value=0.065 Score=55.71 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=44.2
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC-CCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD-PFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSIT 277 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 277 (944)
...+++++|.+|+||||++..+......... ..+..+.... .....+.+....+..+.......+...+...+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-
Confidence 3469999999999999999988763221111 2344555432 222333333333333222111122333333333 23
Q ss_pred CCceEEEeCCC
Q 042336 278 GKKFLLVLDDV 288 (944)
Q Consensus 278 ~k~~LlVlDdv 288 (944)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34458888843
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.29 E-value=0.089 Score=55.06 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=33.0
Q ss_pred cccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 175 VRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 175 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
++|....+..+...+.... ....+.+++|.|..|+||||+++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555665555555443 234678999999999999999998865
No 269
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.28 E-value=0.13 Score=51.90 Aligned_cols=22 Identities=41% Similarity=0.744 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999965
No 270
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.23 E-value=0.13 Score=54.15 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=37.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEAL 255 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 255 (944)
-.++.|.|.+|+||||||..++.+....+ ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 35889999999999999988876422222 567777655 56777777776654
No 271
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.18 E-value=0.031 Score=62.65 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=35.9
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+.++|++..++.+...+..+ .-|.++|.+|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 35889999999888887643 24789999999999999999984
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.05 E-value=0.039 Score=54.28 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=28.3
Q ss_pred HHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 181 EKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.++|.+.+... .+...+++|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345555555432 13457999999999999999999876
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.87 E-value=0.031 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 274
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.87 E-value=0.24 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999975
No 275
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.78 E-value=0.0095 Score=57.26 Aligned_cols=108 Identities=11% Similarity=-0.040 Sum_probs=50.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCC--CCCCCHHHHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSA--PNLGELNSLLQHICLSITG 278 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~ 278 (944)
.++.|+|..|+||||++..++...... .. .++.+....+ .+.-...+...++... ....+.+ .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 478899999999999996655421111 11 2333322211 0000000000111100 0011111 12233344
Q ss_pred CceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccch
Q 042336 279 KKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 279 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 319 (944)
+.-+|++|.+..-+. .|......+.+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 566999999965432 355544434333 77899988743
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.76 E-value=0.027 Score=53.51 Aligned_cols=19 Identities=42% Similarity=0.751 Sum_probs=18.2
Q ss_pred EEEEEeeCCchHHHHHHHH
Q 042336 202 VISMVGMGGIGKTTLAQFV 220 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v 220 (944)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 277
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.70 E-value=0.14 Score=55.50 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=36.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccc----cccCceeEEEEeCCCCCHHHHHHHHHHHhhC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDV----INNFEKRIWVSVSDPFDEYRVAKAIIEALEG 257 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 257 (944)
.++.|+|.+|+|||||+..++-.-.. .+.-..++|++....+....+. .+++.++.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 58999999999999999976421111 1123468888877766655543 35555543
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.68 E-value=0.028 Score=53.64 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|.|.|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.62 E-value=0.056 Score=56.04 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.3
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999976
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.59 E-value=0.032 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.49 E-value=0.031 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 282
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.48 E-value=0.15 Score=53.82 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=37.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
.++.|.|.+|+||||+|..++.+... .=..++|++. ..+...+...++....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 58889999999999999988774222 2235666554 5567788887766554
No 283
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.44 E-value=0.057 Score=54.94 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 182 KNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 182 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+.++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443332 334568899999999999999999876
No 284
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.44 E-value=0.16 Score=54.16 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=32.5
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccC----ceeEEEEeCCCCCHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNF----EKRIWVSVSDPFDEYR 246 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~ 246 (944)
.-.++.|+|.+|+|||||+..++......... ..++|++....+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 44799999999999999999987632111111 2458888766554443
No 285
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.39 E-value=0.045 Score=56.73 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.5
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998876
No 286
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.38 E-value=0.21 Score=52.03 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=46.5
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH--HHHHHHHHHhhCCC---CCCCCHHHH-HHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY--RVAKAIIEALEGSA---PNLGELNSL-LQHI 272 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 272 (944)
...++.|+|.+|+||||++..++.. ....-..+.++... .+... +-+...++..+... ....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4689999999999999999998863 22221234455443 22222 22233444443221 111222222 2234
Q ss_pred HHHhcCCceEEEeCCC
Q 042336 273 CLSITGKKFLLVLDDV 288 (944)
Q Consensus 273 ~~~l~~k~~LlVlDdv 288 (944)
...+....-++|+|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 4444555558888865
No 287
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.38 E-value=0.048 Score=58.95 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=35.7
Q ss_pred ccccchhHHHHHHHHhccC--------C-cccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 174 EVRGRDEEKNTLKTKLLCE--------N-SEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 174 ~~vGr~~~~~~l~~~L~~~--------~-~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689998888888877200 0 001113456889999999999999999883
No 288
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.33 E-value=0.031 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.27 E-value=0.044 Score=53.47 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|+|+|+.|+||||+++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 290
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.15 E-value=0.077 Score=47.42 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=19.4
Q ss_pred ccceeccCcccccccCcc-ccCCCcccEEEecCcc
Q 042336 610 HLRYFKLHWLEIKELPDT-CCELFNLQTIEIEGCY 643 (944)
Q Consensus 610 ~Lr~L~Ls~~~i~~lP~~-i~~L~~L~~L~L~~~~ 643 (944)
+|++|+|++|.|..+|.. +..+.+|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 356666666666655544 3455556666655554
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.11 E-value=0.047 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.02 E-value=0.034 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 293
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.96 E-value=0.048 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997654
No 294
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.88 E-value=0.042 Score=52.53 Aligned_cols=22 Identities=14% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999976
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.87 E-value=0.055 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+++|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.85 E-value=0.051 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.83 E-value=0.04 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+.|.|+|+.|+||||+|+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999986
No 298
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.80 E-value=0.084 Score=55.57 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=31.2
Q ss_pred ccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 176 RGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 176 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
|+.+.-.+++++.+...-. .+....+.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3445556666666543221 23456788999999999999998887
No 299
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.71 E-value=0.091 Score=57.54 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=32.8
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCC-HHHHHHHH
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFD-EYRVAKAI 251 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 251 (944)
.++|+|..|+|||||++.+...... ..-+..+++.+.++.+ ..++..++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHh
Confidence 5889999999999999998874221 1224556777776553 34444444
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.64 E-value=0.048 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+++|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 301
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.64 E-value=0.061 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.6
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 302
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.61 E-value=0.067 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|+|+|..|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999977
No 303
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.58 E-value=0.063 Score=52.84 Aligned_cols=24 Identities=42% Similarity=0.387 Sum_probs=21.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999999876
No 304
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.58 E-value=0.068 Score=56.56 Aligned_cols=54 Identities=13% Similarity=-0.081 Sum_probs=33.3
Q ss_pred HHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCccc-cccCceeEEEEeCCCC
Q 042336 183 NTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDV-INNFEKRIWVSVSDPF 242 (944)
Q Consensus 183 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~ 242 (944)
-++++.+..-. .-..++|+|..|+|||||++.+.+.-.. ...+. ++++-+.+..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 34555554322 2347899999999999999988763111 11232 3456677654
No 305
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.52 E-value=0.49 Score=51.86 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.3
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+++|.++|.+|+||||++.++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988876
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.51 E-value=0.06 Score=51.91 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 307
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.38 E-value=0.061 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988763
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.37 E-value=0.045 Score=53.47 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 309
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.36 E-value=0.065 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.3
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+|+|.|+.|+||||+|+.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999986
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.27 E-value=0.061 Score=52.59 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 311
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.26 E-value=0.063 Score=52.48 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.26 E-value=0.063 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.25 E-value=0.053 Score=51.11 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.7
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999977
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.24 E-value=0.059 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 315
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.21 E-value=0.56 Score=51.17 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=22.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...++.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888763
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.20 E-value=0.061 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...|+|+|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999877
No 317
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.19 E-value=0.067 Score=56.09 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=27.5
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD 240 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 240 (944)
++.+||+|.|-|||||||.+-.+.-- ....=..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 46789999999999999999777552 222222355566553
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.18 E-value=0.075 Score=51.04 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.1
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 319
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.17 E-value=0.062 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999873
No 320
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.15 E-value=0.047 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.14 E-value=0.065 Score=54.44 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.++.|.|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.09 E-value=0.049 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999876
No 323
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.04 E-value=0.46 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..++.|+|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998876
No 324
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.03 E-value=0.065 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|.|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.01 E-value=0.064 Score=52.38 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999987
No 326
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.00 E-value=0.31 Score=53.45 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=37.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC-CHHHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF-DEYRVAKAIIE 253 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~ 253 (944)
..++|.|.+|+|||+|++.+.+.. .+.+-+.++++-+.+.. .+.++.+++.+
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 458999999999999999888731 12345678888888766 45566666554
No 327
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.98 E-value=0.071 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.97 E-value=0.076 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.96 E-value=0.056 Score=51.37 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.93 E-value=0.08 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...|+|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 331
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.90 E-value=0.064 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 332
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.89 E-value=0.054 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 333
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.88 E-value=0.46 Score=53.66 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=36.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
-.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 3578899999999999998887642211 123567776544 56777777765543
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.86 E-value=0.055 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999976
No 335
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.84 E-value=0.54 Score=51.38 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=37.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC-CHHHHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF-DEYRVAKAIIEA 254 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~ 254 (944)
..++|.|.+|+|||+|++.+.+.. .+.+-+.++++-+.+.. .+.++.+++.+.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 468999999999999999988731 12334567788888765 345666666553
No 336
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.80 E-value=0.065 Score=57.56 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=32.4
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 358999886666544443221 123889999999999999999873
No 337
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.77 E-value=0.071 Score=53.14 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 338
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.74 E-value=0.084 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.2
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...++|.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 339
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.70 E-value=0.25 Score=47.73 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.3
Q ss_pred EEEEEeeCCchHHHHHHHHh
Q 042336 202 VISMVGMGGIGKTTLAQFVY 221 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~ 221 (944)
+..|+|.+|.|||++|....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 67799999999999997753
No 340
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.65 E-value=0.071 Score=49.90 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.2
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.61 E-value=0.1 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 342
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.59 E-value=0.082 Score=53.71 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.9
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 343
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.57 E-value=0.098 Score=54.80 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+++|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3567999999999999999999876
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.57 E-value=0.081 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999976
No 345
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.56 E-value=0.1 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 346
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.56 E-value=0.06 Score=51.60 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 347
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.55 E-value=0.085 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 348
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.54 E-value=0.13 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578899999999999999988864
No 349
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.50 E-value=0.087 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 350
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.46 E-value=0.48 Score=49.12 Aligned_cols=87 Identities=17% Similarity=0.079 Sum_probs=46.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCC-CCHHHHHHHHHHHhhCC---CCCCCCHHHHHHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDP-FDEYRVAKAIIEALEGS---APNLGELNSLLQHICLS 275 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 275 (944)
..+++++|.+|+||||++..+... ....=..+.++..... ....+.++...+..+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 578999999999999999988763 2222224555554422 22233344444444332 11122333443333334
Q ss_pred hc-CCceEEEeCCC
Q 042336 276 IT-GKKFLLVLDDV 288 (944)
Q Consensus 276 l~-~k~~LlVlDdv 288 (944)
++ ..-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43 33337888875
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.40 E-value=0.053 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=16.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 352
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.40 E-value=0.057 Score=57.69 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=57.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHH--HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEY--RVAKAIIEALEGSAPNLGELNSLLQHICLSITG 278 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 278 (944)
.+++|+|..|+|||||.+.+... +.......+ +++.+..... .. ...+.+... .... ......+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~~-~~~~---~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESK-KCLVNQREV-HRDT---LGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCS-SSEEEEEEB-TTTB---SCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhcc-ccceeeeee-cccc---CCHHHHHHHHhhh
Confidence 48999999999999999988762 211111112 2222211100 00 000000000 0011 1234467788888
Q ss_pred CceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchhhh
Q 042336 279 KKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKETVA 322 (944)
Q Consensus 279 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 322 (944)
.+=+|++|.+- +.+.+..+.... ..|.-||+||...+.+
T Consensus 196 ~PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 89999999995 333444433332 2366688888765544
No 353
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.37 E-value=0.068 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.36 E-value=0.11 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999876
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.33 E-value=0.085 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 356
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.29 E-value=0.09 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+++|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 357
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.23 E-value=0.1 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999977
No 358
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.22 E-value=0.1 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 359
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.20 E-value=0.074 Score=50.30 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 360
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.20 E-value=0.33 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7899999999999999988873
No 361
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.08 E-value=0.098 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 362
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.07 E-value=0.12 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 363
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.03 E-value=0.14 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.154 Sum_probs=21.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.03 E-value=0.093 Score=50.70 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 365
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.00 E-value=0.1 Score=50.31 Aligned_cols=24 Identities=13% Similarity=0.524 Sum_probs=21.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 446899999999999999999886
No 366
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.00 E-value=0.28 Score=48.75 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=29.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccc---cc-cCceeEEEEeCCCCC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDV---IN-NFEKRIWVSVSDPFD 243 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~ 243 (944)
-.+++|+|..|+|||||++.+...... .. .-..++|+.....+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 469999999999999999998752111 11 124577777554433
No 367
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.96 E-value=0.099 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 368
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.95 E-value=0.093 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.5
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+++|+|..|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999876
No 369
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.88 E-value=0.35 Score=55.32 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+++.|.|.+|.||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999998876
No 370
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.85 E-value=0.13 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.1
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...+++|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988763
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.84 E-value=0.23 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|+|.|..|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 372
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.83 E-value=0.24 Score=51.92 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 373
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.83 E-value=0.28 Score=43.72 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=42.5
Q ss_pred ceeccCccccc--ccCccccCCCcccEEEecCccCCcccCcc-cccCCCCceeecccccc
Q 042336 612 RYFKLHWLEIK--ELPDTCCELFNLQTIEIEGCYNLNRLPQG-VGKLVNLRHLIFDVNFV 668 (944)
Q Consensus 612 r~L~Ls~~~i~--~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 668 (944)
..++.++..++ .+|..+. .+|++|+|++|. +..+|.+ +..+++|+.|+|+.|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 36777777777 7886543 479999999998 8888775 57899999999977754
No 374
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.83 E-value=0.41 Score=49.60 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998873
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.78 E-value=0.11 Score=52.78 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|+|+|+.|+||||+++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
No 376
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.76 E-value=0.095 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 377
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.72 E-value=0.67 Score=51.32 Aligned_cols=53 Identities=9% Similarity=0.029 Sum_probs=36.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhh
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALE 256 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 256 (944)
.++.|.|.+|+||||+|..++.+.... .=..++|++.. .+...+...++....
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 588999999999999999887642211 11356776654 456777777765543
No 378
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.67 E-value=0.085 Score=51.96 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.66 E-value=0.11 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 380
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.61 E-value=0.22 Score=47.72 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=59.4
Q ss_pred hhHHHHhhcCCcccEEEeccC-CCccc-ccccchhhhcccccceeccCccccc-----ccCccccCCCcccEEEecCccC
Q 042336 572 PVLQVLFNQFTCLRALKITRN-SKENS-IYEIPKEIQKLIHLRYFKLHWLEIK-----ELPDTCCELFNLQTIEIEGCYN 644 (944)
Q Consensus 572 ~~l~~~~~~~~~Lr~L~L~~~-~~~~~-~~~lp~~i~~l~~Lr~L~Ls~~~i~-----~lP~~i~~L~~L~~L~L~~~~~ 644 (944)
..+..++.+-+.|+.|+|+++ ..... ...+-..+..-.+|+.|+|++|.|. .+-+.+..-..|++|+|++|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence 446666777889999999985 52110 1124455666778999999999875 344555566778888888877
Q ss_pred Cc-----ccCcccccCCCCceeecc
Q 042336 645 LN-----RLPQGVGKLVNLRHLIFD 664 (944)
Q Consensus 645 l~-----~lp~~i~~L~~L~~L~l~ 664 (944)
+. .+-..+..-+.|++|+++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECC
Confidence 43 222334444556677664
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.53 E-value=0.12 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 382
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.52 E-value=0.41 Score=50.50 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=42.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
.+++|+|..|.|||||++.+..-.. .-...+.+.-......... + +.+.. ..+ ........+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~-~~g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQL-FFG--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEE-ECB--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEE-EeC--CChhHHHHHHHHhhhCC
Confidence 4799999999999999999987311 1123344332111110000 0 00000 000 11123345566777888
Q ss_pred eEEEeCCCCc
Q 042336 281 FLLVLDDVWT 290 (944)
Q Consensus 281 ~LlVlDdvw~ 290 (944)
=++++|.+-.
T Consensus 242 ~ilildE~~~ 251 (330)
T 2pt7_A 242 DRIILGELRS 251 (330)
T ss_dssp SEEEECCCCS
T ss_pred CEEEEcCCCh
Confidence 8999999843
No 383
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.47 E-value=0.092 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.44 E-value=0.13 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+|.|.|+.|+||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999877
No 385
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.43 E-value=0.094 Score=49.40 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 386
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.33 E-value=0.11 Score=52.86 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=19.7
Q ss_pred EEEEeeCCchHHHHHHHHhcC
Q 042336 203 ISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~ 223 (944)
+.|+|.+|+||||||+.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999873
No 387
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.31 E-value=1.3 Score=49.32 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.0
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...++|.|+|.+|+||||++.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998875
No 388
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.30 E-value=0.15 Score=48.94 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=26.3
Q ss_pred HHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 182 KNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 182 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+..+..++.. . +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~-i----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-T----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-C----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4555555532 1 22346899999999999999888873
No 389
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.28 E-value=0.14 Score=53.30 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 390
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.28 E-value=0.11 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.387 Sum_probs=19.7
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 391
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.14 E-value=0.12 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 392
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.13 E-value=0.12 Score=50.86 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 393
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.12 E-value=0.15 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.06 E-value=0.15 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 395
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.98 E-value=0.51 Score=52.47 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=34.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIE 253 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 253 (944)
.++.|.|.+|+||||||..++...... .=..++|++.. .+...+...++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHHH
Confidence 588999999999999999988742221 11356777654 345666666543
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.96 E-value=0.11 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999987
No 397
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.95 E-value=0.68 Score=48.96 Aligned_cols=55 Identities=18% Similarity=0.026 Sum_probs=34.0
Q ss_pred HHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcCcccc-ccCceeEEEEeCCC
Q 042336 181 EKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYNDNDVI-NNFEKRIWVSVSDP 241 (944)
Q Consensus 181 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 241 (944)
---++++.+..-. .-..++|+|.+|+|||+|++.+.+..... ..+. ++++-+.+.
T Consensus 161 tGiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 161 YSTRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred ccchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 3345667665422 23467999999999999999988731111 1222 345666554
No 398
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.92 E-value=0.13 Score=51.55 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999976
No 399
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.86 E-value=0.13 Score=50.61 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.85 E-value=0.14 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 401
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.84 E-value=0.22 Score=47.90 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998874
No 402
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.82 E-value=2 Score=57.74 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=72.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhcCCc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAPNLGELNSLLQHICLSITGKK 280 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 280 (944)
+-+.++|++|+|||++|+.+.... ..+ ..+.++++...+...+++.+-..+.......... ..-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 357799999999999997776531 122 3456778877777766655554433211000000 000004678
Q ss_pred eEEEeCCCCccCcc------ChhhhHhhhccCC-----C-------CcEEEEEccchh------hhhc-ccccceEeCCC
Q 042336 281 FLLVLDDVWTEDYS------KWEPFHNCLMNCL-----H-------GSKILVTTRKET------VARM-MESIDILIIKE 335 (944)
Q Consensus 281 ~LlVlDdvw~~~~~------~~~~l~~~l~~~~-----~-------gs~iivTtr~~~------v~~~-~~~~~~~~l~~ 335 (944)
.++++||+.-...+ ..+.++..+..++ . +..+|-++.... +... ..-..++.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 89999996322222 2333444443321 1 123333442221 1010 11124677777
Q ss_pred CChHHHHHHHHHHh
Q 042336 336 LSELECWSLFKRFA 349 (944)
Q Consensus 336 L~~~~~~~lf~~~~ 349 (944)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777776653
No 403
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.80 E-value=0.17 Score=53.20 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=22.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+++|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999876
No 404
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.78 E-value=0.15 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999976
No 405
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.76 E-value=0.27 Score=52.63 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 182 KNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 182 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+.+.+.+... .....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23567999999999999999988865
No 406
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.71 E-value=0.24 Score=54.07 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=35.2
Q ss_pred CccccchhHHHHHHHHhccC--------CcccCCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 173 SEVRGRDEEKNTLKTKLLCE--------NSEEQNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..++|.++.++.+...+... ........+-+.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45889888888887666321 000011234588999999999999999987
No 407
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.70 E-value=0.15 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999998873
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.61 E-value=0.14 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999977
No 409
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.54 E-value=0.51 Score=61.00 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=53.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-----NLGELNSLLQHIC 273 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 273 (944)
..+++.|+|++|+|||+||.++... ...+=..++|+++.+.++... ++.++.+.. .....++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 3468999999999999999998773 222324678888888776666 344442211 1122344455554
Q ss_pred HHh-cCCceEEEeCCC
Q 042336 274 LSI-TGKKFLLVLDDV 288 (944)
Q Consensus 274 ~~l-~~k~~LlVlDdv 288 (944)
+.. ..+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 443 367789999998
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.47 E-value=0.12 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 411
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.33 E-value=0.16 Score=49.68 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=19.9
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999976
No 412
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.27 E-value=0.13 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=20.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 413
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.22 E-value=0.17 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999865
No 414
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.22 E-value=0.15 Score=52.66 Aligned_cols=50 Identities=30% Similarity=0.409 Sum_probs=32.0
Q ss_pred CccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|.+..++++.+....-... -.-... +.|+|.+|+||||||+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 46788887666655443210000 000112 889999999999999999873
No 415
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.12 E-value=0.19 Score=53.52 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999876
No 416
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.11 E-value=0.18 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.11 E-value=0.33 Score=53.52 Aligned_cols=25 Identities=44% Similarity=0.513 Sum_probs=22.3
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+++|+|..|+|||||++.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3467999999999999999999986
No 418
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.09 E-value=0.79 Score=49.85 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCceEEEEEEeeCCchHHHHHHHHhc
Q 042336 197 QNAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 197 ~~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35678999999999999999998886
No 419
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.09 E-value=0.17 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 420
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.03 E-value=0.18 Score=49.55 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.1
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999977
No 421
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.02 E-value=0.13 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=15.9
Q ss_pred EEEEEEeeCCchHHHHHHHHh-c
Q 042336 201 QVISMVGMGGIGKTTLAQFVY-N 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~-~ 222 (944)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 422
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.95 E-value=0.26 Score=57.12 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHHHhccCCcccCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEEQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..++|.+..++.+...+... ..+.|+|.+|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 35899998888888877532 36899999999999999999873
No 423
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.89 E-value=0.16 Score=49.79 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999976
No 424
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.87 E-value=0.19 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 425
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.85 E-value=0.19 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999976
No 426
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.78 E-value=0.19 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 427
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.78 E-value=0.45 Score=45.95 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=29.1
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHH
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAII 252 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 252 (944)
.|+|=|..|+||||.++.+.+. .+..-..+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 3678899999999999999873 333333334333333333334444443
No 428
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.77 E-value=0.19 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 429
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.77 E-value=0.19 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 430
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.76 E-value=0.25 Score=47.46 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.5
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..-.++|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.74 E-value=0.18 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=19.2
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 432
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.68 E-value=0.17 Score=47.68 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+++|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999998873
No 433
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.58 E-value=0.24 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=22.3
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+|+|.|..|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999887
No 434
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.56 E-value=0.2 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 435
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.49 E-value=0.2 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 436
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.43 E-value=0.27 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 437
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.41 E-value=0.74 Score=54.37 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHHHhccCCcc-------cCCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSE-------EQNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..+.|.++.+++|.+.+.-+... +-...+-+.++|++|.|||.+|+++++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 45778888888887766432110 1123445789999999999999999984
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.41 E-value=1.4 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 439
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.35 E-value=0.23 Score=52.11 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.8
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+++|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998876
No 440
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.34 E-value=0.21 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 441
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.31 E-value=0.25 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.29 E-value=0.2 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 443
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.29 E-value=0.22 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999986
No 444
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.27 E-value=0.21 Score=47.68 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999873
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.17 E-value=0.22 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 446
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.16 E-value=0.21 Score=54.83 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.7
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999999873
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.15 E-value=0.22 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 448
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.11 E-value=0.28 Score=49.99 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.8
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3567889999999999999999875
No 449
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.11 E-value=0.23 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.675 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999976
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.10 E-value=0.22 Score=48.53 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+|.|.|++|+||+|.|+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999873
No 451
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.09 E-value=0.22 Score=50.89 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 452
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.07 E-value=0.33 Score=48.77 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=27.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD 240 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 240 (944)
.++.|.|.+|+||||||.+++.. ....=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 58899999999999999877653 111223567776544
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.07 E-value=0.23 Score=50.53 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 454
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.06 E-value=0.87 Score=58.95 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=55.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHHH
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-----NLGELNSLLQHICL 274 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 274 (944)
-+++.|+|.+|+||||||.+++.. ....=..++|++....++... ++.++.+.. ...+.+++...+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 458999999999999999998874 222224678888877766542 455554321 22355666665554
Q ss_pred Hh-cCCceEEEeCCCC
Q 042336 275 SI-TGKKFLLVLDDVW 289 (944)
Q Consensus 275 ~l-~~k~~LlVlDdvw 289 (944)
.. ..+.-+||+|-+-
T Consensus 456 lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHHhcCCcEEEECCHH
Confidence 33 3566799999883
No 455
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.05 E-value=0.39 Score=47.69 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.1
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 456
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.95 E-value=0.23 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.518 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999875
No 457
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.92 E-value=0.23 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 458
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.89 E-value=1.8 Score=47.58 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=34.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEAL 255 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 255 (944)
-.++.|.|.+|+||||+|.+++.+.... =..++|++.. .+..++...++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHHH
Confidence 3588999999999999998887742222 1356666544 45556666665543
No 459
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.80 E-value=0.23 Score=57.11 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=32.4
Q ss_pred CccccchhHHHHHHHHhccCCccc-----CCceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 173 SEVRGRDEEKNTLKTKLLCENSEE-----QNAVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 173 ~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+.++|.+..+..+.-.+....... -....-+.++|.+|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 346788776666655554331000 000014789999999999999999874
No 460
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.79 E-value=0.53 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|.|..|+|||||++.++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.79 E-value=0.22 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.0
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhc
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999876
No 462
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.67 E-value=0.29 Score=53.72 Aligned_cols=25 Identities=40% Similarity=0.437 Sum_probs=21.9
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 463
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.56 E-value=0.43 Score=49.97 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.1
Q ss_pred CceEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCC
Q 042336 198 NAVQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPF 242 (944)
Q Consensus 198 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 242 (944)
...++|+|+|-||+||||+|..+... ....=..++-|......
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 45688999999999999999888763 22222245666665433
No 464
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.48 E-value=0.55 Score=45.88 Aligned_cols=105 Identities=14% Similarity=0.179 Sum_probs=55.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC----------CCCCHHHHHH
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP----------NLGELNSLLQ 270 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~~ 270 (944)
-.|.+.|.||+||||+|..+..... ...+ .+..+.+..+.+.... ..+..+..... ...+++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~-~V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGV-RVMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTC-CEEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCC-CEEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHHH--
Confidence 3477899999999999888776321 2223 3445555554333321 11222221110 11233322
Q ss_pred HHHHHhcCCceEEEeCCCCcc------CccChhhhHhhhccCCCCcEEEEEccch
Q 042336 271 HICLSITGKKFLLVLDDVWTE------DYSKWEPFHNCLMNCLHGSKILVTTRKE 319 (944)
Q Consensus 271 ~l~~~l~~k~~LlVlDdvw~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 319 (944)
+..+.=++|+|++-.. ....|..+...++. |-.|+.|+.-+
T Consensus 81 -----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 -----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp -----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred -----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 2234569999987432 12256666554443 55688887644
No 465
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.45 E-value=0.27 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.++|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35899999999999999999987
No 466
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.31 E-value=0.3 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|+|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46899999999999999999876
No 467
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.30 E-value=0.29 Score=49.99 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 468
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.27 E-value=0.27 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
-.+++|+|..|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 35899999999999999999876
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.17 E-value=0.13 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=18.3
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.15 E-value=0.29 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999998875
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.11 E-value=0.31 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999999873
No 472
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.07 E-value=0.31 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998764
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.04 E-value=0.32 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=21.7
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
..++|.|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999987
No 474
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.00 E-value=0.69 Score=50.20 Aligned_cols=85 Identities=12% Similarity=0.197 Sum_probs=49.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCc----eeEEEEeCCCC-CHHHHHHHHHHH--hhCC-----CCCCCCHHH--
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFE----KRIWVSVSDPF-DEYRVAKAIIEA--LEGS-----APNLGELNS-- 267 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~--l~~~-----~~~~~~~~~-- 267 (944)
.++|.|..|+|||+|+.++.+.... +-+ .++++-+.+.. .+.++.+++.+. +... ..+..-...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 4689999999999999999885332 223 56677777654 445565554442 1110 111111111
Q ss_pred ---HHHHHHHHh---cCCceEEEeCCC
Q 042336 268 ---LLQHICLSI---TGKKFLLVLDDV 288 (944)
Q Consensus 268 ---~~~~l~~~l---~~k~~LlVlDdv 288 (944)
..-.+.+++ +++.+|+++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111233333 489999999999
No 475
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.93 E-value=0.36 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.6
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 476
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.82 E-value=0.3 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 477
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.77 E-value=0.34 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
+.|.|.|..|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999773
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.70 E-value=0.97 Score=57.71 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHHHHh
Q 042336 202 VISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP-----NLGELNSLLQHICLSI 276 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 276 (944)
++.|.|.+|+||||||.++.. .....=..++|++....++... ++.++.+.. ...+.+++...+....
T Consensus 385 lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv 457 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHHH
Q ss_pred -cCCceEEEeCCC
Q 042336 277 -TGKKFLLVLDDV 288 (944)
Q Consensus 277 -~~k~~LlVlDdv 288 (944)
..+.-+||+|-+
T Consensus 458 ~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 458 RSGAVDVIVVDSV 470 (1706)
T ss_dssp HHTCCSEEEESCS
T ss_pred HhcCCCEEEECCH
No 479
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.67 E-value=0.28 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.747 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|+|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5899999999999999999865
No 480
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.63 E-value=0.35 Score=46.81 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.-.++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999764
No 481
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.56 E-value=0.62 Score=45.14 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=51.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhCCCC--CCCCHHHHHHHHHHHhc
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEGSAP--NLGELNSLLQHICLSIT 277 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 277 (944)
-.+..++|..|.||||.+...... ...+-..++.+.... +.+.-...+...++.... ...+.+ .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r--~~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRR--TQFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 468889999999999999776653 222222333333221 111111233444432211 111111 2233333
Q ss_pred CCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEccchh
Q 042336 278 GKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTTRKET 320 (944)
Q Consensus 278 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 320 (944)
++-=+|++|.+.--+.+.++.+ ..+.+ .|-.||+|.++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecccc
Confidence 3334999999854333333333 33322 3778999998654
No 482
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.49 E-value=0.34 Score=50.93 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999863
No 483
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.42 E-value=0.36 Score=45.87 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 042336 202 VISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+.+|+|..|.|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998864
No 484
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.40 E-value=0.3 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.5
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhc
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
...+++|+|++|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 485
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.36 E-value=1.7 Score=52.33 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=20.0
Q ss_pred ceEEEEEEeeCCchHHHHHHHH
Q 042336 199 AVQVISMVGMGGIGKTTLAQFV 220 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v 220 (944)
.-.+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 486
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.33 E-value=0.35 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.+++|+|..|+|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999763
No 487
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.26 E-value=0.35 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 488
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.23 E-value=2.4 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|..|.|||||++.+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998865
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.22 E-value=0.87 Score=44.48 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
...|.|.|..|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368899999999999999999873
No 490
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.11 E-value=0.35 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEEeeCCchHHHHHHHHhcC
Q 042336 202 VISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 202 vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3689999999999999998753
No 491
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.08 E-value=0.47 Score=45.03 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.5
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
....|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999874
No 492
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.01 E-value=0.68 Score=47.24 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=26.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCC
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSD 240 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 240 (944)
++|+|.|-||+||||+|..+... ....=..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCC
Confidence 57888899999999999888763 222222456666653
No 493
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.97 E-value=0.44 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
....|.|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456889999999999999998764
No 494
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.89 E-value=1.7 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
+++.|.|.+|.||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999887765
No 495
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.88 E-value=2.6 Score=50.79 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=62.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcCccccccCc---eeEEEEeCCC-------CCH-----------HHHHHHHHHHhhCC-
Q 042336 201 QVISMVGMGGIGKTTLAQFVYNDNDVINNFE---KRIWVSVSDP-------FDE-----------YRVAKAIIEALEGS- 258 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~-------~~~-----------~~~~~~i~~~l~~~- 258 (944)
.+++|+|..|+|||||.+.+..- .+. .++ ..-.+.+.+. .++ ..-...+++.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 47899999999999999999741 111 011 0001222221 122 22234455555442
Q ss_pred -----CCCCCCHHH-HHHHHHHHhcCCceEEEeCCCCcc-CccChhhhHhhhccCCCCcEEEEEccchhhhh
Q 042336 259 -----APNLGELNS-LLQHICLSITGKKFLLVLDDVWTE-DYSKWEPFHNCLMNCLHGSKILVTTRKETVAR 323 (944)
Q Consensus 259 -----~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 323 (944)
.....+..+ ..-.+.+.+-.++=+++||.--+. |...-..+...+.. .|.-||++|.+.....
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHH
Confidence 111223222 233455666777889999976321 22333445555555 3556777777655443
No 496
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.85 E-value=0.43 Score=44.36 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 497
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.83 E-value=0.44 Score=45.73 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.4
Q ss_pred ceEEEEEEeeCCchHHHHHHHHhcC
Q 042336 199 AVQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 199 ~~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
....|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999864
No 498
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=85.69 E-value=3.3 Score=41.09 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=53.0
Q ss_pred EEEEeeCCchHHHHHHHHhcCccccccCceeEEEEeCCCCCHHHHHHHHHHHhhC---C--------CCC-----CCCHH
Q 042336 203 ISMVGMGGIGKTTLAQFVYNDNDVINNFEKRIWVSVSDPFDEYRVAKAIIEALEG---S--------APN-----LGELN 266 (944)
Q Consensus 203 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~---~--------~~~-----~~~~~ 266 (944)
+.|+|..|.|||.+|..+.... . ..++++ +.. ..+..++.+.+.. . ... ....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv-~P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIV-VPT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEE-ESS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEE-eCC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 6789999999999998877631 1 223333 222 2344444444332 1 000 01123
Q ss_pred HHHHHHHHHhcCCceEEEeCCCCccCccChhhhHhhhccCCCCcEEEEEc
Q 042336 267 SLLQHICLSITGKKFLLVLDDVWTEDYSKWEPFHNCLMNCLHGSKILVTT 316 (944)
Q Consensus 267 ~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt 316 (944)
.+.... ..+.++--+||+|++..-....+..+...++ ...++.+|.
T Consensus 181 ~l~~~~-~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNA-EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTH-HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhH-HHhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 333222 2334455699999997654455666655543 234555554
No 499
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.68 E-value=0.49 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcC
Q 042336 200 VQVISMVGMGGIGKTTLAQFVYND 223 (944)
Q Consensus 200 ~~vv~I~G~~GiGKTtLa~~v~~~ 223 (944)
.--|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998764
No 500
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.59 E-value=0.39 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 042336 201 QVISMVGMGGIGKTTLAQFVYN 222 (944)
Q Consensus 201 ~vv~I~G~~GiGKTtLa~~v~~ 222 (944)
.+++|+|+.|+|||||.+.+.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999987
Done!