BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042337
         (236 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1
           SV=1
          Length = 211

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 111/216 (51%), Gaps = 17/216 (7%)

Query: 20  HVPKFGNWETEEHVPYSLYFDEARKRRNAAK--INPNDTHENQNTISDNLASIKTSTFET 77
           +VPKFGNWE EE+VPY+ YFD+ARK R      +NPND   N ++ S       +S  + 
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 78  ETKSGAQNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTTRQQNAGFDSRIGR 137
           E     +  RE   +R   ES           +  +   R GR      QN  +D++   
Sbjct: 65  EQVDTVRRSREH--MRSREESELKQFGDAGGSSNEAANKRQGRA----SQNNSYDNK--- 115

Query: 138 SPISPWRNYSTGCSQRRSVTQGA-ETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREE 196
           SP+       TG S+ +     A E+ +    VP+FGDWDE +P+SADGYT+IFN+VREE
Sbjct: 116 SPLHKNSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREE 175

Query: 197 RLKGTGNVAAAATPGKPHYKDLKKHKNGAFKKCCCF 232
           R  G  NV+ ++    P ++  +   N +   CCCF
Sbjct: 176 RSSG-ANVSGSSR--TPTHQSSRNPNNTS--SCCCF 206


>sp|Q8S3M3|NOIL_ELAOL NOI-like protein OS=Elaeis oleifera PE=2 SV=1
          Length = 228

 Score = 38.9 bits (89), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 20 HVPKFGNWETEEHVPYSLYFDEA-RKRRNAAKI-NPNDTHEN 59
          HVPKFGNW+ E  + Y+ YF+   R + + +KI NPND  EN
Sbjct: 6  HVPKFGNWDGEN-ISYTTYFETVHRDKGDGSKIFNPNDPEEN 46


>sp|Q96BY7|ATG2B_HUMAN Autophagy-related protein 2 homolog B OS=Homo sapiens GN=ATG2B PE=1
           SV=5
          Length = 2078

 Score = 33.1 bits (74), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 46  RNAAKINPNDTHENQNTISDNLASIKTSTFETETKSGAQNGREDGDLRRPTESPWYHHTV 105
           R   KINP   H     I+          ++ E + GA + ++  DLRRP  SP+    V
Sbjct: 847 RIVLKINPPAMHSILERIAAEEEEENDGHYQEEEEGGAHSLKDVCDLRRPAPSPFSSRRV 906

Query: 106 NIEVAINSLVHRPG--RKMTTRQQNA 129
             E   N  +  PG   +MT  Q  A
Sbjct: 907 MFE---NEQMVMPGDPVEMTEFQDKA 929


>sp|Q80XK6|ATG2B_MOUSE Autophagy-related protein 2 homolog B OS=Mus musculus GN=Atg2b PE=1
           SV=3
          Length = 2075

 Score = 32.0 bits (71), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 46  RNAAKINPNDTHENQNTISDNLASIKTSTFETETKSGAQNGREDGDLRRPTESPWYHHTV 105
           R   KINP   H     I+          ++ E   GA + ++  DLRRP  SP+    V
Sbjct: 846 RMVLKINPPAMHSILERIAAEEEEENDGHYQEEEDGGAHSLKDVCDLRRPAPSPFSSRRV 905

Query: 106 NIEVAINSLVHRPGR--KMTTRQQNA 129
             E   N  +  PG   +MT  Q  A
Sbjct: 906 MFE---NEQMVMPGDPVEMTEFQDKA 928


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.130    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,293,837
Number of Sequences: 539616
Number of extensions: 3878538
Number of successful extensions: 9697
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9684
Number of HSP's gapped (non-prelim): 24
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)