Query 042337
Match_columns 236
No_of_seqs 120 out of 142
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 08:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042337.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042337hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1efnb_ d.102.1.1 (B:) Regulat 24.3 7.3 0.00053 30.0 -0.1 7 230-236 67-73 (133)
2 d1kula_ b.3.1.1 (A:) Glucoamyl 11.2 36 0.0026 23.5 0.9 18 19-36 27-44 (108)
3 d3bmva2 b.3.1.1 (A:579-683) Cy 8.1 38 0.0027 23.5 -0.0 16 19-34 27-42 (105)
4 d1vema1 b.3.1.1 (A:418-516) be 7.6 66 0.0048 22.0 1.1 18 163-180 20-37 (99)
5 d1lnga_ d.201.1.1 (A:) SRP19 { 7.2 82 0.006 21.6 1.5 31 33-63 2-32 (87)
6 d1cyga2 b.3.1.1 (A:575-680) Cy 6.6 48 0.0035 22.8 -0.1 17 19-35 27-43 (106)
7 d1qhoa2 b.3.1.1 (A:577-686) Cy 6.4 71 0.0052 22.0 0.8 16 19-34 28-43 (110)
8 d2ox7a1 b.172.1.1 (A:3-145) Hy 5.8 43 0.0032 23.7 -0.8 10 169-178 2-11 (143)
9 d2axti1 f.23.37.1 (I:1-35) Pho 5.6 93 0.0068 18.5 0.8 8 54-61 26-33 (35)
10 d2p84a1 b.172.1.1 (A:3-135) Or 5.3 51 0.0037 23.9 -0.6 9 169-177 2-10 (133)
No 1
>d1efnb_ d.102.1.1 (B:) Regulatory factor Nef {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=24.28 E-value=7.3 Score=29.96 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=5.6
Q ss_pred eeccCCC
Q 042337 230 CCFPVPW 236 (236)
Q Consensus 230 cCF~w~~ 236 (236)
-||||||
T Consensus 67 l~fGW~f 73 (133)
T d1efnb_ 67 LTFGWCY 73 (133)
T ss_dssp SSTTCCE
T ss_pred ceeeeee
Confidence 3799997
No 2
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}
Probab=11.18 E-value=36 Score=23.51 Aligned_cols=18 Identities=28% Similarity=0.804 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCcccc
Q 042337 19 NHVPKFGNWETEEHVPYS 36 (236)
Q Consensus 19 ~~vPkFG~w~~~~~~pyT 36 (236)
+.+|.||+|+.+..++.+
T Consensus 27 Gs~~~LG~W~~~~a~~l~ 44 (108)
T d1kula_ 27 GSISQLGDWETSDGIALS 44 (108)
T ss_dssp CSSGGGTTTCTTTSEECB
T ss_pred eChHHhCCCCHHHCccce
Confidence 578999999986555543
No 3
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Probab=8.06 E-value=38 Score=23.45 Aligned_cols=16 Identities=31% Similarity=0.841 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCcc
Q 042337 19 NHVPKFGNWETEEHVP 34 (236)
Q Consensus 19 ~~vPkFG~w~~~~~~p 34 (236)
+.+|.||+|+-+..++
T Consensus 27 Gs~~~LG~W~~~~a~~ 42 (105)
T d3bmva2 27 GNVAELGNWDTSKAIG 42 (105)
T ss_dssp ESSGGGTTTCGGGCBC
T ss_pred eCcHHHCCCCHHHCcc
Confidence 5689999999754443
No 4
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}
Probab=7.62 E-value=66 Score=21.96 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 042337 163 TDHTAAVPEFGDWDEPDP 180 (236)
Q Consensus 163 ~~~~~~vPkFG~WD~~np 180 (236)
---....|.||.||.++.
T Consensus 20 v~vvGs~~eLG~W~~~ka 37 (99)
T d1vema1 20 VYITGNRAELGSWDTKQY 37 (99)
T ss_dssp EEEEESSGGGTTTCSSSS
T ss_pred EEEEeCcHHHCCCChhhh
Confidence 344567899999997653
No 5
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.20 E-value=82 Score=21.59 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=21.0
Q ss_pred cccchhhhHHHhhcccCCCCCCCCCCCcccc
Q 042337 33 VPYSLYFDEARKRRNAAKINPNDTHENQNTI 63 (236)
Q Consensus 33 ~pyT~~fe~ar~~k~~~~iNPNDP~eNPe~~ 63 (236)
+-|.+|||.-+.-+.|-++.=+--.+||.+.
T Consensus 2 vIyP~Y~Ds~~sr~eGRRv~k~~aV~~P~~~ 32 (87)
T d1lnga_ 2 IIWPSYIDKKKSRREGRKVPEELAIEKPSLK 32 (87)
T ss_dssp EECGGGTBTTSCTTTTCCSCTTTCBSSCCHH
T ss_pred EEcchhhcCCCChhhcCccCHHHHccCCCHH
Confidence 3489999976655544337666666788765
No 6
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.64 E-value=48 Score=22.79 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCccc
Q 042337 19 NHVPKFGNWETEEHVPY 35 (236)
Q Consensus 19 ~~vPkFG~w~~~~~~py 35 (236)
+..|.+|+|+-+..++.
T Consensus 27 Gs~~~LG~W~~~~a~~l 43 (106)
T d1cyga2 27 GNVYELGNWDTSKAIGP 43 (106)
T ss_dssp ESSGGGBTTCGGGCBCC
T ss_pred cCHHHHCCCCHHHCccc
Confidence 56899999997555544
No 7
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}
Probab=6.39 E-value=71 Score=21.98 Aligned_cols=16 Identities=31% Similarity=0.879 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCCcc
Q 042337 19 NHVPKFGNWETEEHVP 34 (236)
Q Consensus 19 ~~vPkFG~w~~~~~~p 34 (236)
+.+|.+|+|+-...++
T Consensus 28 G~~~~LG~W~~~~a~~ 43 (110)
T d1qhoa2 28 GNIPELGNWSTDTSGA 43 (110)
T ss_dssp ESSGGGTTTCCCCSSC
T ss_pred eCcHHHCCCChhhccc
Confidence 5689999999855444
No 8
>d2ox7a1 b.172.1.1 (A:3-145) Hypothetical protein EF1440 {Enterococcus faecalis [TaxId: 1351]}
Probab=5.77 E-value=43 Score=23.74 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=8.6
Q ss_pred CCCCCCCCCC
Q 042337 169 VPEFGDWDEP 178 (236)
Q Consensus 169 vPkFG~WD~~ 178 (236)
+|||-.||..
T Consensus 2 ipKFRaWdk~ 11 (143)
T d2ox7a1 2 IPKFRAWDTY 11 (143)
T ss_dssp CCCEEEEETT
T ss_pred CcEEEEEECC
Confidence 6999999965
No 9
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.55 E-value=93 Score=18.51 Aligned_cols=8 Identities=25% Similarity=0.385 Sum_probs=5.8
Q ss_pred CCCCCCcc
Q 042337 54 NDTHENQN 61 (236)
Q Consensus 54 NDP~eNPe 61 (236)
|||..||.
T Consensus 26 nDP~RnP~ 33 (35)
T d2axti1 26 GDPARNPK 33 (35)
T ss_dssp TCTTCSSC
T ss_pred CCCCCCCC
Confidence 67777774
No 10
>d2p84a1 b.172.1.1 (A:3-135) Orf041 product {Staphylococcus phage 37 [TaxId: 320840]}
Probab=5.34 E-value=51 Score=23.90 Aligned_cols=9 Identities=33% Similarity=1.084 Sum_probs=7.8
Q ss_pred CCCCCCCCC
Q 042337 169 VPEFGDWDE 177 (236)
Q Consensus 169 vPkFG~WD~ 177 (236)
+|||-.||.
T Consensus 2 iPKFRaWDk 10 (133)
T d2p84a1 2 IPKFREFDR 10 (133)
T ss_dssp CCCEEEECH
T ss_pred CCeEEEEEC
Confidence 799999995
Done!