BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042339
         (94 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5UPH0|YL100_MIMIV Putative ankyrin repeat protein L100 OS=Acanthamoeba polyphaga
           mimivirus GN=MIMI_L100 PE=4 SV=1
          Length = 602

 Score = 30.4 bits (67), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 4   DAALPTNTPSIPCVLDPRGSAGICGDRLLASSSESAALSGWLLLSNHGI 52
           D  LPTN P    ++DP G+       ++ +  E +    +  +++HG+
Sbjct: 66  DITLPTNDPDFKMIVDPSGTKCCANKIIIGTERELSDPETFAYMASHGV 114


>sp|B1JQU4|K6PF_YERPY 6-phosphofructokinase OS=Yersinia pseudotuberculosis serotype O:3
           (strain YPIII) GN=pfkA PE=3 SV=1
          Length = 327

 Score = 28.9 bits (63), Expect = 9.0,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 21  RGSAGICGDRLLASSSESAALSGWLLLSNHGIRSEVFDVGLQ 62
           RG A +  DR+LAS   S A+   LLL +H  +   F VG+Q
Sbjct: 254 RGGAPVAYDRILASRMGSYAVD--LLLQDHDYKKGGFCVGVQ 293


>sp|Q66GA8|K6PF_YERPS 6-phosphofructokinase OS=Yersinia pseudotuberculosis serotype I
           (strain IP32953) GN=pfkA PE=3 SV=1
          Length = 327

 Score = 28.9 bits (63), Expect = 9.0,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 21  RGSAGICGDRLLASSSESAALSGWLLLSNHGIRSEVFDVGLQ 62
           RG A +  DR+LAS   S A+   LLL +H  +   F VG+Q
Sbjct: 254 RGGAPVAYDRILASRMGSYAVD--LLLQDHDYKKGGFCVGVQ 293


>sp|B2JZA3|K6PF_YERPB 6-phosphofructokinase OS=Yersinia pseudotuberculosis serotype IB
           (strain PB1/+) GN=pfkA PE=3 SV=1
          Length = 327

 Score = 28.9 bits (63), Expect = 9.0,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 21  RGSAGICGDRLLASSSESAALSGWLLLSNHGIRSEVFDVGLQ 62
           RG A +  DR+LAS   S A+   LLL +H  +   F VG+Q
Sbjct: 254 RGGAPVAYDRILASRMGSYAVD--LLLQDHDYKKGGFCVGVQ 293


>sp|B8GSS3|RECF_THISH DNA replication and repair protein RecF OS=Thioalkalivibrio sp.
           (strain HL-EbGR7) GN=recF PE=3 SV=1
          Length = 360

 Score = 28.9 bits (63), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 39  AALSGWLLLSNHGIRSEVFDVGLQTNILPLEGHDIGQFLGLE 80
           A   GWL+    G+ S+VF   ++++ +PL G D  Q   +E
Sbjct: 311 ARHRGWLMNCLQGLGSQVFVTAIESDQVPLSGWDSWQMFHVE 352


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,698,459
Number of Sequences: 539616
Number of extensions: 1139856
Number of successful extensions: 2203
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2200
Number of HSP's gapped (non-prelim): 7
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)