Query 042339
Match_columns 94
No_of_seqs 109 out of 123
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 08:48:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kkj_A Amine oxidase, flavin-c 98.8 5.3E-09 1.8E-13 66.4 3.9 44 6-49 279-322 (336)
2 3qj4_A Renalase; FAD/NAD(P)-bi 98.2 1E-06 3.5E-11 64.4 4.4 37 13-49 300-337 (342)
3 1yvv_A Amine oxidase, flavin-c 98.1 1.7E-06 5.9E-11 61.9 3.9 42 8-49 281-322 (336)
4 3nks_A Protoporphyrinogen oxid 96.8 0.00055 1.9E-08 51.6 2.6 30 20-49 440-469 (477)
5 3i6d_A Protoporphyrinogen oxid 96.4 0.0012 4.3E-08 49.0 1.9 31 19-49 433-463 (470)
6 3lov_A Protoporphyrinogen oxid 96.0 0.0025 8.7E-08 48.2 1.9 33 17-49 428-460 (475)
7 2ivd_A PPO, PPOX, protoporphyr 95.6 0.0084 2.9E-07 45.3 3.5 29 21-49 440-468 (478)
8 3nrn_A Uncharacterized protein 95.5 0.014 4.9E-07 43.5 4.2 45 18-70 369-416 (421)
9 3ka7_A Oxidoreductase; structu 94.5 0.041 1.4E-06 40.6 4.2 28 22-49 392-422 (425)
10 2yg5_A Putrescine oxidase; oxi 93.6 0.044 1.5E-06 41.0 3.0 33 17-49 411-446 (453)
11 2vvm_A Monoamine oxidase N; FA 93.0 0.058 2E-06 41.1 2.8 33 17-49 445-480 (495)
12 2e1m_C L-glutamate oxidase; L- 91.0 0.14 4.9E-06 35.8 2.8 33 17-49 113-147 (181)
13 1sez_A Protoporphyrinogen oxid 90.1 0.25 8.4E-06 37.6 3.6 29 21-49 460-488 (504)
14 2b9w_A Putative aminooxidase; 90.1 0.19 6.6E-06 37.2 2.9 28 22-49 394-421 (424)
15 1b37_A Protein (polyamine oxid 89.8 0.24 8.2E-06 37.8 3.3 31 19-49 420-453 (472)
16 4dgk_A Phytoene dehydrogenase; 88.4 0.23 7.9E-06 37.6 2.3 28 22-49 458-486 (501)
17 1s3e_A Amine oxidase [flavin-c 84.6 0.69 2.4E-05 35.7 3.2 31 19-49 416-449 (520)
18 2jae_A L-amino acid oxidase; o 83.9 0.79 2.7E-05 34.7 3.2 31 19-49 448-480 (489)
19 4gut_A Lysine-specific histone 78.1 1.6 5.4E-05 37.2 3.4 29 21-49 741-772 (776)
20 1rsg_A FMS1 protein; FAD bindi 72.3 3.1 0.00011 32.1 3.4 31 19-49 469-502 (516)
21 3k7m_X 6-hydroxy-L-nicotine ox 71.8 3.2 0.00011 30.5 3.3 35 15-49 384-421 (431)
22 2z3y_A Lysine-specific histone 71.5 3.2 0.00011 33.8 3.5 31 19-49 620-653 (662)
23 2iid_A L-amino-acid oxidase; f 70.9 3.2 0.00011 31.5 3.2 32 18-49 446-479 (498)
24 4b2v_A S64; toxin, ICK; NMR {S 61.8 1.7 5.7E-05 24.2 0.0 17 16-36 9-25 (32)
25 2xag_A Lysine-specific histone 61.7 6.5 0.00022 34.0 3.6 31 19-49 791-824 (852)
26 1v0j_A UDP-galactopyranose mut 48.7 9.7 0.00033 28.7 2.4 28 22-49 353-382 (399)
27 3ayj_A Pro-enzyme of L-phenyla 46.6 16 0.00055 31.3 3.6 31 19-49 642-674 (721)
28 1i8t_A UDP-galactopyranose mut 33.0 38 0.0013 25.1 3.4 28 22-49 333-362 (367)
29 2bi7_A UDP-galactopyranose mut 28.2 33 0.0011 25.7 2.4 28 22-49 336-365 (384)
30 4a9w_A Monooxygenase; baeyer-v 24.4 58 0.002 22.4 2.9 31 19-49 312-346 (357)
31 4eyb_A Beta-lactamase NDM-1; m 22.0 62 0.0021 22.8 2.7 23 10-32 189-211 (270)
32 3v76_A Flavoprotein; structura 21.4 44 0.0015 25.7 2.0 27 22-48 383-415 (417)
No 1
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.77 E-value=5.3e-09 Score=66.38 Aligned_cols=44 Identities=27% Similarity=0.275 Sum_probs=38.3
Q ss_pred CCCCCCCCCCceeCCCCCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 6 ALPTNTPSIPCVLDPRGSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 6 A~p~~~~g~~~l~d~~~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
|++......++.++...+|++||||+.|++|+.|+.||..+|+.
T Consensus 279 a~~~~~~~~~~~~~~~~~v~l~GDa~~g~gv~~A~~sG~~aA~~ 322 (336)
T 3kkj_A 279 ARPAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARR 322 (336)
T ss_dssp EEESSCCCCSSEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHH
T ss_pred cccccccCccceeeCCCCEEEEecccCCcCHHHHHHHHHHHHHH
Confidence 34555666788898999999999999999999999999999875
No 2
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.22 E-value=1e-06 Score=64.36 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=32.6
Q ss_pred CCCcee-CCCCCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 13 SIPCVL-DPRGSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 13 g~~~l~-d~~~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
...+++ +...+|++||||+.|.+||+|+.||..+|+.
T Consensus 300 ~~~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~~aa~~ 337 (342)
T 3qj4_A 300 CPGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEA 337 (342)
T ss_dssp SCSCEEEETTTEEEECSGGGSCSSHHHHHHHHHHHHHH
T ss_pred CcceeEecCCccEEEEccccCCCCccHHHHHHHHHHHH
Confidence 345777 7778999999999999999999999999865
No 3
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.13 E-value=1.7e-06 Score=61.89 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=36.2
Q ss_pred CCCCCCCCceeCCCCCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 8 PTNTPSIPCVLDPRGSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 8 p~~~~g~~~l~d~~~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
|....+..++++...+|.+||||+.++.||+|+.||.+||+.
T Consensus 281 ~~~~~~~~~~~~~~~rl~laGDa~~g~gv~~a~~sg~~lA~~ 322 (336)
T 1yvv_A 281 PAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARR 322 (336)
T ss_dssp ESSCCCCSCEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCeeecCCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 344455667888889999999999999999999999999875
No 4
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=96.82 E-value=0.00055 Score=51.60 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=27.1
Q ss_pred CCCCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 20 PRGSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 20 ~~~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
...+|.+||||+.|..||+|+.||..+|+.
T Consensus 440 ~~~~l~l~G~~~~G~gv~~a~~sg~~aA~~ 469 (477)
T 3nks_A 440 HRLPLTLAGASYEGVAVNDCIESGRQAAVS 469 (477)
T ss_dssp TTCSEEECSTTTSCCSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEccCCCCCcHHHHHHHHHHHHHH
Confidence 345899999999999999999999999875
No 5
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=96.36 E-value=0.0012 Score=48.97 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=27.3
Q ss_pred CCCCCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
++..+|.+||||+.+..||+|+.||..+|+.
T Consensus 433 ~~~~~l~~aG~~~~g~gv~~a~~sG~~aA~~ 463 (470)
T 3i6d_A 433 SAYPGVYMTGASFEGVGIPDCIDQGKAAVSD 463 (470)
T ss_dssp HHSTTEEECSTTTSCCSHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 4456899999999999999999999999864
No 6
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=95.98 E-value=0.0025 Score=48.23 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=28.4
Q ss_pred eeCCCCCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 17 VLDPRGSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 17 l~d~~~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
+..+..+|.+||||+.+..+|+|+.||..+|+.
T Consensus 428 l~~~~~~l~~aG~~~~g~g~~~a~~sG~~aA~~ 460 (475)
T 3lov_A 428 VLAQYPGIYLAGLAYDGVGLPDCVASAKTMIES 460 (475)
T ss_dssp HHHHSTTEEECSTTTSCSSHHHHHHHHHHHHHH
T ss_pred HHhhCCCEEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 334556899999999998999999999999876
No 7
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=95.62 E-value=0.0084 Score=45.27 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=26.1
Q ss_pred CCCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 21 RGSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 21 ~~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
..+|.+||||+.+..||+|++||..+|+.
T Consensus 440 ~~~l~~aG~~~~g~gv~gA~~SG~~aA~~ 468 (478)
T 2ivd_A 440 LPGLHLIGNAYKGVGLNDCIRNAAQLADA 468 (478)
T ss_dssp STTEEECSTTTSCCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 36899999999888899999999999876
No 8
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=95.48 E-value=0.014 Score=43.53 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=32.2
Q ss_pred eCCCCCeeeeccCCCCC-ch--HHHHHHHHHHHhcCCCCcchhhccccCccccCCc
Q 042339 18 LDPRGSAGICGDRLLAS-SS--ESAALSGWLLLSNHGIRSEVFDVGLQTNILPLEG 70 (94)
Q Consensus 18 ~d~~~~lGlCGDWl~Gg-RV--E~AwlSG~aLA~~~~~~~~~~~~gl~~~~~~~~g 70 (94)
..+ .+|++||||+.+. -+ |+|..||...|+.= .+|=..+|--+|-
T Consensus 369 ~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l-------~~~~~~~~~~~~~ 416 (421)
T 3nrn_A 369 WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL-------NLGSFSEWYLLEH 416 (421)
T ss_dssp CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT-------TSCCCCTTTC---
T ss_pred CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh-------CcCchhhhhhhhh
Confidence 445 7899999999988 55 99999999999653 3444446665554
No 9
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=94.45 E-value=0.041 Score=40.62 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.8
Q ss_pred CCeeeeccCCCC---CchHHHHHHHHHHHhc
Q 042339 22 GSAGICGDRLLA---SSSESAALSGWLLLSN 49 (94)
Q Consensus 22 ~~lGlCGDWl~G---gRVE~AwlSG~aLA~~ 49 (94)
.+|.+||||..+ -.||+|.+||+..++.
T Consensus 392 ~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~ 422 (425)
T 3ka7_A 392 SGLYVVGDGAKGKGGIEVEGVALGVMSVMEK 422 (425)
T ss_dssp BTEEECSTTSCCTTCCHHHHHHHHHHHHHHC
T ss_pred CCeEEeCCccCCCCCCccHHHHHHHHHHHHH
Confidence 479999999987 7999999999998763
No 10
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=93.62 E-value=0.044 Score=41.05 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=26.7
Q ss_pred eeCCCCCeeeeccCCC---CCchHHHHHHHHHHHhc
Q 042339 17 VLDPRGSAGICGDRLL---ASSSESAALSGWLLLSN 49 (94)
Q Consensus 17 l~d~~~~lGlCGDWl~---GgRVE~AwlSG~aLA~~ 49 (94)
+..+..+|.+||||+. .+.||+|+.||...|+.
T Consensus 411 ~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~ 446 (453)
T 2yg5_A 411 SRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAAD 446 (453)
T ss_dssp TTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHHH
T ss_pred HhCCcCceEEeecccccccccchHHHHHHHHHHHHH
Confidence 3445679999999973 36899999999998864
No 11
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=92.96 E-value=0.058 Score=41.10 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=27.6
Q ss_pred eeCCCCCeeeeccCCC---CCchHHHHHHHHHHHhc
Q 042339 17 VLDPRGSAGICGDRLL---ASSSESAALSGWLLLSN 49 (94)
Q Consensus 17 l~d~~~~lGlCGDWl~---GgRVE~AwlSG~aLA~~ 49 (94)
+..+..+|.+||||+. .+.||+|+.||...|+.
T Consensus 445 l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~ 480 (495)
T 2vvm_A 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARV 480 (495)
T ss_dssp HHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHH
T ss_pred HhCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHH
Confidence 3456779999999986 47899999999998764
No 12
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=91.03 E-value=0.14 Score=35.85 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=28.4
Q ss_pred eeCCCCCeeeeccCCC--CCchHHHHHHHHHHHhc
Q 042339 17 VLDPRGSAGICGDRLL--ASSSESAALSGWLLLSN 49 (94)
Q Consensus 17 l~d~~~~lGlCGDWl~--GgRVE~AwlSG~aLA~~ 49 (94)
+-.+..+|.+||+++. .+-||+|+.||...|+.
T Consensus 113 l~~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~ 147 (181)
T 2e1m_C 113 VVRPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIA 147 (181)
T ss_dssp HHSCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHH
Confidence 4456789999999987 78999999999988765
No 13
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=90.11 E-value=0.25 Score=37.59 Aligned_cols=29 Identities=17% Similarity=-0.104 Sum_probs=26.0
Q ss_pred CCCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 21 RGSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 21 ~~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
-.+|.+||||..|.-|++|+.||...|+.
T Consensus 460 ~~~l~~aG~~~~g~~v~gai~sG~~aA~~ 488 (504)
T 1sez_A 460 LPGLFYAGNHRGGLSVGKALSSGCNAADL 488 (504)
T ss_dssp STTEEECCSSSSCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 35899999999988999999999998865
No 14
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=90.06 E-value=0.19 Score=37.17 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=25.5
Q ss_pred CCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 22 GSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 22 ~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
.++.+||+|..-+-.|+|+.||...|+.
T Consensus 394 ~~l~~aG~~~~~g~~e~a~~Sg~~aA~~ 421 (424)
T 2b9w_A 394 RNTFYAGEIMSFGNFDEVCHYSKDLVTR 421 (424)
T ss_dssp GGEEECSGGGSCSSHHHHHHHHHHHHHH
T ss_pred CCceEeccccccccHHHHHHHHHHHHHH
Confidence 4899999999989999999999999863
No 15
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=89.75 E-value=0.24 Score=37.76 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=25.9
Q ss_pred CCCCCeeeeccCCC---CCchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGDRLL---ASSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGDWl~---GgRVE~AwlSG~aLA~~ 49 (94)
.+-.+|.+||||+. .+-||+|++||...|+.
T Consensus 420 ~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~ 453 (472)
T 1b37_A 420 APVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 453 (472)
T ss_dssp CCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHH
T ss_pred ccCCcEEEeecccCCCCCCchhHHHHHHHHHHHH
Confidence 44569999999985 56999999999988754
No 16
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=88.43 E-value=0.23 Score=37.61 Aligned_cols=28 Identities=7% Similarity=-0.147 Sum_probs=20.0
Q ss_pred CCeeeeccCCC-CCchHHHHHHHHHHHhc
Q 042339 22 GSAGICGDRLL-ASSSESAALSGWLLLSN 49 (94)
Q Consensus 22 ~~lGlCGDWl~-GgRVE~AwlSG~aLA~~ 49 (94)
.+|++||||.. |+-|++|.+||...|+.
T Consensus 458 ~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~ 486 (501)
T 4dgk_A 458 TNLYLVGAGTHPGAGIPGVIGSAKATAGL 486 (501)
T ss_dssp TTEEECCCH------HHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCcccHHHHHHHHHHHHHH
Confidence 58999999986 67899999999887653
No 17
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=84.62 E-value=0.69 Score=35.65 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=25.2
Q ss_pred CCCCCeeeeccCC---CCCchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGDRL---LASSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGDWl---~GgRVE~AwlSG~aLA~~ 49 (94)
.+-.+|.+||||. ..+-||+|+.||...|+.
T Consensus 416 ~p~~~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~ 449 (520)
T 1s3e_A 416 QPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449 (520)
T ss_dssp CCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeehhhcCcCcEEhHHHHHHHHHHHHH
Confidence 3446899999987 346899999999988765
No 18
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=83.87 E-value=0.79 Score=34.74 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.6
Q ss_pred CCCCCeeeeccCC--CCCchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGDRL--LASSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGDWl--~GgRVE~AwlSG~aLA~~ 49 (94)
.+..+|.+||+|. .++-||+|+.||...|+.
T Consensus 448 ~~~~~l~faG~~~~~~~~~v~gAi~sg~~aA~~ 480 (489)
T 2jae_A 448 EPVDKIYFAGDHLSNAIAWQHGALTSARDVVTH 480 (489)
T ss_dssp SCBTTEEECSGGGBSSTTSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEeEHHhccCccHHHHHHHHHHHHHHH
Confidence 4567999999987 488999999999998764
No 19
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=78.14 E-value=1.6 Score=37.18 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=25.3
Q ss_pred CCCeeeeccCCC---CCchHHHHHHHHHHHhc
Q 042339 21 RGSAGICGDRLL---ASSSESAALSGWLLLSN 49 (94)
Q Consensus 21 ~~~lGlCGDWl~---GgRVE~AwlSG~aLA~~ 49 (94)
..+|..+|+|.. .+-||+|++||...|+.
T Consensus 741 ~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~ 772 (776)
T 4gut_A 741 QGTVFFAGEATNRHFPQTVTGAYLSGVREASK 772 (776)
T ss_dssp TTTEEECSGGGCSSSCSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEehhhcCCCCcCHHHHHHHHHHHHHH
Confidence 579999999986 57899999999998763
No 20
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=72.33 E-value=3.1 Score=32.13 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=25.9
Q ss_pred CCCCCeeeeccCCC---CCchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGDRLL---ASSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGDWl~---GgRVE~AwlSG~aLA~~ 49 (94)
.+..+|..+|+.+. .+-||+|++||..-|+.
T Consensus 469 ~~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~ 502 (516)
T 1rsg_A 469 GQDSRIRFAGEHTIMDGAGCAYGAWESGRREATR 502 (516)
T ss_dssp CSSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEeccccccCCCccchhHHHHHHHHHHH
Confidence 36789999999873 48999999999988754
No 21
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=71.80 E-value=3.2 Score=30.55 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=28.4
Q ss_pred CceeCCCCCeeeec-cCCC--CCchHHHHHHHHHHHhc
Q 042339 15 PCVLDPRGSAGICG-DRLL--ASSSESAALSGWLLLSN 49 (94)
Q Consensus 15 ~~l~d~~~~lGlCG-DWl~--GgRVE~AwlSG~aLA~~ 49 (94)
+.+..|..+|..+| ++.. -+-||+|+.||..-|+.
T Consensus 384 ~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~ 421 (431)
T 3k7m_X 384 KELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNA 421 (431)
T ss_dssp GGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHH
Confidence 35557888999999 6763 47899999999988765
No 22
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=71.54 E-value=3.2 Score=33.83 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=25.5
Q ss_pred CCCCCeeeeccCCC---CCchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGDRLL---ASSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGDWl~---GgRVE~AwlSG~aLA~~ 49 (94)
.+..+|..+|+++. .+-||+|+.||..-|+.
T Consensus 620 ~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~ 653 (662)
T 2z3y_A 620 QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 653 (662)
T ss_dssp -CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHH
Confidence 34579999999976 37999999999988764
No 23
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=70.94 E-value=3.2 Score=31.45 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=26.2
Q ss_pred eCCCCCeeeeccCCC--CCchHHHHHHHHHHHhc
Q 042339 18 LDPRGSAGICGDRLL--ASSSESAALSGWLLLSN 49 (94)
Q Consensus 18 ~d~~~~lGlCGDWl~--GgRVE~AwlSG~aLA~~ 49 (94)
..+..+|.+||+++. .+-||+|+.||...|+.
T Consensus 446 ~~p~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~ 479 (498)
T 2iid_A 446 TASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARD 479 (498)
T ss_dssp HCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEEcccccCCcCHHHHHHHHHHHHHH
Confidence 346679999999973 36899999999988765
No 24
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=61.77 E-value=1.7 Score=24.22 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=11.1
Q ss_pred ceeCCCCCeeeeccCCCCCch
Q 042339 16 CVLDPRGSAGICGDRLLASSS 36 (94)
Q Consensus 16 ~l~d~~~~lGlCGDWl~GgRV 36 (94)
|--||+. -||||+|..|
T Consensus 9 fcpdpek----mgdwccgrci 25 (32)
T 4b2v_A 9 FCPDPEK----MGDWCCGRCI 25 (32)
T ss_dssp BCCCTTT----TCCCCSSEEE
T ss_pred cCCChHH----hcchhhhHHH
Confidence 4445553 3999998654
No 25
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=61.68 E-value=6.5 Score=33.97 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=25.9
Q ss_pred CCCCCeeeeccCCC---CCchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGDRLL---ASSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGDWl~---GgRVE~AwlSG~aLA~~ 49 (94)
.+..+|.++|+++. .+-||+|++||..-|+.
T Consensus 791 ~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~ 824 (852)
T 2xag_A 791 QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 824 (852)
T ss_dssp CCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHH
Confidence 34579999999975 47999999999988765
No 26
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=48.67 E-value=9.7 Score=28.67 Aligned_cols=28 Identities=14% Similarity=-0.021 Sum_probs=24.5
Q ss_pred CCeeeeccC--CCCCchHHHHHHHHHHHhc
Q 042339 22 GSAGICGDR--LLASSSESAALSGWLLLSN 49 (94)
Q Consensus 22 ~~lGlCGDW--l~GgRVE~AwlSG~aLA~~ 49 (94)
.+|.+||+| .....+|++..||..+++.
T Consensus 353 ~~v~~~G~~~~~~~~~~e~~i~sa~~~a~~ 382 (399)
T 1v0j_A 353 SKVLFGGRLGTYQYLDMHMAIASALNMYDN 382 (399)
T ss_dssp HCEEECHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEccceEEEEecCHHHHHHHHHHHHHH
Confidence 589999997 5668899999999999876
No 27
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=46.59 E-value=16 Score=31.25 Aligned_cols=31 Identities=16% Similarity=0.017 Sum_probs=25.9
Q ss_pred CCCCCeeeeccCCC--CCchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGDRLL--ASSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGDWl~--GgRVE~AwlSG~aLA~~ 49 (94)
.++.+|.+|||.+. ++=||+|..||...+..
T Consensus 642 ~~~gri~fAGe~~S~~~GWieGAl~Sa~~Aa~~ 674 (721)
T 3ayj_A 642 SLDNRFFIASDSYSHLGGWLEGAFMSALNAVAG 674 (721)
T ss_dssp TTCCCEEECSGGGSSCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeehhhccCCceehHHHHHHHHHHHH
Confidence 46789999999874 68899999999987633
No 28
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=32.97 E-value=38 Score=25.12 Aligned_cols=28 Identities=7% Similarity=-0.061 Sum_probs=24.6
Q ss_pred CCeeeeccC--CCCCchHHHHHHHHHHHhc
Q 042339 22 GSAGICGDR--LLASSSESAALSGWLLLSN 49 (94)
Q Consensus 22 ~~lGlCGDW--l~GgRVE~AwlSG~aLA~~ 49 (94)
.++.+||-| .....+|++..||..+++.
T Consensus 333 ~~~~~~Gr~~~~~y~~~~d~i~sa~~~a~~ 362 (367)
T 1i8t_A 333 DKVIFGGRLAEYKYYDMHQVISAALYQVKN 362 (367)
T ss_dssp TTEEECSTTTTTSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEcccceeeEecCHHHHHHHHHHHHHH
Confidence 589999988 6678999999999999875
No 29
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=28.17 E-value=33 Score=25.73 Aligned_cols=28 Identities=4% Similarity=-0.177 Sum_probs=24.3
Q ss_pred CCeeeeccCC--CCCchHHHHHHHHHHHhc
Q 042339 22 GSAGICGDRL--LASSSESAALSGWLLLSN 49 (94)
Q Consensus 22 ~~lGlCGDWl--~GgRVE~AwlSG~aLA~~ 49 (94)
.+|.+||.|. .+..+|++..||..+++.
T Consensus 336 ~~~~~~Gr~~~~~~~~~~d~i~sa~~~a~~ 365 (384)
T 2bi7_A 336 TNITFVGRLGTYRYLDMDVTIAEALKTAEV 365 (384)
T ss_dssp SSEEECHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEccccEEEEeCCHHHHHHHHHHHHHH
Confidence 5899999984 478999999999999865
No 30
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=24.41 E-value=58 Score=22.44 Aligned_cols=31 Identities=6% Similarity=-0.162 Sum_probs=22.6
Q ss_pred CCCCCeeeecc-CCCC---CchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGD-RLLA---SSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGD-Wl~G---gRVE~AwlSG~aLA~~ 49 (94)
....+|+++|| +|.+ ..+-.|...|..+|+.
T Consensus 312 t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~ 346 (357)
T 4a9w_A 312 LAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQ 346 (357)
T ss_dssp SSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHH
T ss_pred CCCCCeEEeccccccccchhhhhhhHHHHHHHHHH
Confidence 34458999997 6653 5677788888888765
No 31
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=21.95 E-value=62 Score=22.83 Aligned_cols=23 Identities=13% Similarity=-0.110 Sum_probs=18.7
Q ss_pred CCCCCCceeCCCCCeeeeccCCC
Q 042339 10 NTPSIPCVLDPRGSAGICGDRLL 32 (94)
Q Consensus 10 ~~~g~~~l~d~~~~lGlCGDWl~ 32 (94)
.+++.-++|.++.++.++||-+.
T Consensus 189 HT~g~~~~~~~~~~vLfsGD~l~ 211 (270)
T 4eyb_A 189 HTSDNITVGIDGTDIAFGGCLIK 211 (270)
T ss_dssp SSSSCCEEEETTSSEEECTTTCC
T ss_pred cCCCCEEEEecCCcEEEEeCeec
Confidence 34566799999999999999764
No 32
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=21.39 E-value=44 Score=25.65 Aligned_cols=27 Identities=22% Similarity=0.064 Sum_probs=21.6
Q ss_pred CCeeeec---cC---CCCCchHHHHHHHHHHHh
Q 042339 22 GSAGICG---DR---LLASSSESAALSGWLLLS 48 (94)
Q Consensus 22 ~~lGlCG---DW---l~GgRVE~AwlSG~aLA~ 48 (94)
.+|++|| || |-|=....||-||.+.++
T Consensus 383 ~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~ 415 (417)
T 3v76_A 383 PGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQ 415 (417)
T ss_dssp TTEEECGGGBSEEECSSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeEecccCCCCHHHHHHHHHHHHHhC
Confidence 4799999 54 556689999999997664
Done!