Query 042339
Match_columns 94
No_of_seqs 109 out of 123
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 08:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042339.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042339hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seza1 c.3.1.2 (A:13-329,A:44 96.6 0.00075 5.5E-08 42.4 3.4 28 22-49 337-364 (373)
2 d1b5qa1 c.3.1.2 (A:5-293,A:406 96.4 0.0011 8.2E-08 40.0 3.3 31 19-49 304-337 (347)
3 d2dw4a2 c.3.1.2 (A:274-654,A:7 95.9 0.0034 2.5E-07 39.3 3.6 33 17-49 407-442 (449)
4 d2iida1 c.3.1.2 (A:4-319,A:433 95.6 0.003 2.2E-07 41.0 2.6 34 16-49 328-363 (370)
5 d2ivda1 c.3.1.2 (A:10-306,A:41 81.3 0.65 4.7E-05 28.6 3.2 29 21-49 316-344 (347)
6 d2v5za1 c.3.1.2 (A:6-289,A:402 44.8 8.8 0.00064 24.2 3.1 32 18-49 298-332 (383)
7 d1ko3a_ d.157.1.1 (A:) Zn meta 25.9 26 0.0019 21.8 3.0 24 10-33 148-171 (230)
8 d2gqfa1 c.3.1.8 (A:1-194,A:343 24.2 21 0.0015 22.9 2.3 28 22-49 216-249 (253)
9 d1jjta_ d.157.1.1 (A:) Zn meta 23.6 29 0.0021 22.0 2.9 25 9-33 136-160 (220)
10 d1mqoa_ d.157.1.1 (A:) Zn meta 23.3 29 0.0021 22.1 2.9 24 9-32 142-165 (221)
No 1
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=96.63 E-value=0.00075 Score=42.35 Aligned_cols=28 Identities=18% Similarity=-0.082 Sum_probs=25.5
Q ss_pred CCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 22 GSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 22 ~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
.+|++||||+.|..|+.|+.||...|+.
T Consensus 337 pglf~aGd~~~g~~~~~A~~~G~~aA~~ 364 (373)
T d1seza1 337 PGLFYAGNHRGGLSVGKALSSGCNAADL 364 (373)
T ss_dssp TTEEECCSSSSCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCchhHHHHHHHHHHHHHH
Confidence 4799999999999999999999998864
No 2
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=96.45 E-value=0.0011 Score=40.04 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=25.9
Q ss_pred CCCCCeeeeccCCC---CCchHHHHHHHHHHHhc
Q 042339 19 DPRGSAGICGDRLL---ASSSESAALSGWLLLSN 49 (94)
Q Consensus 19 d~~~~lGlCGDWl~---GgRVE~AwlSG~aLA~~ 49 (94)
.+..+|.+||||+. .+.||+|+.||...|+.
T Consensus 304 ~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~ 337 (347)
T d1b5qa1 304 APVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 337 (347)
T ss_dssp CCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEccccCcCCCHHHHHHHHHHHHHHH
Confidence 35579999999974 47899999999998864
No 3
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.91 E-value=0.0034 Score=39.33 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=24.8
Q ss_pred eeCCCCCeeeeccCCCC---CchHHHHHHHHHHHhc
Q 042339 17 VLDPRGSAGICGDRLLA---SSSESAALSGWLLLSN 49 (94)
Q Consensus 17 l~d~~~~lGlCGDWl~G---gRVE~AwlSG~aLA~~ 49 (94)
+..+..+|.+||||... +-||+|++||...|+.
T Consensus 407 ~~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~ 442 (449)
T d2dw4a2 407 APQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 442 (449)
T ss_dssp ---CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHH
Confidence 33456789999999753 5699999999988753
No 4
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=95.64 E-value=0.003 Score=41.03 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=28.5
Q ss_pred ceeCCCCCeeeeccCCCCCc--hHHHHHHHHHHHhc
Q 042339 16 CVLDPRGSAGICGDRLLASS--SESAALSGWLLLSN 49 (94)
Q Consensus 16 ~l~d~~~~lGlCGDWl~GgR--VE~AwlSG~aLA~~ 49 (94)
.++.+..+|.++|||+..++ ||.|+.||..+|..
T Consensus 328 ~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~ 363 (370)
T d2iida1 328 PLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARD 363 (370)
T ss_dssp HHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHH
T ss_pred hhhcccCCEEEecccccCCCcccHHHHHHHHHHHHH
Confidence 45677889999999987654 99999999998865
No 5
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
Probab=81.27 E-value=0.65 Score=28.62 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=25.1
Q ss_pred CCCeeeeccCCCCCchHHHHHHHHHHHhc
Q 042339 21 RGSAGICGDRLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 21 ~~~lGlCGDWl~GgRVE~AwlSG~aLA~~ 49 (94)
..++.+|||+..|-.+..+.-+|..+|+.
T Consensus 316 ~p~~~~~G~~~~g~~~~~~~~~g~~~a~~ 344 (347)
T d2ivda1 316 LPGLHLIGNAYKGVGLNDCIRNAAQLADA 344 (347)
T ss_dssp STTEEECSTTTSCCSHHHHHHHHHHHHHH
T ss_pred CCCEEEecccccCCCHHHHHHHHHHHHHH
Confidence 44799999999998999999999988864
No 6
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.84 E-value=8.8 Score=24.18 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=24.4
Q ss_pred eCCCCCeeeeccCCC---CCchHHHHHHHHHHHhc
Q 042339 18 LDPRGSAGICGDRLL---ASSSESAALSGWLLLSN 49 (94)
Q Consensus 18 ~d~~~~lGlCGDWl~---GgRVE~AwlSG~aLA~~ 49 (94)
..+..+|.++|++.. .+.+|+|..||...|+.
T Consensus 298 ~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~ 332 (383)
T d2v5za1 298 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 332 (383)
T ss_dssp TCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHH
T ss_pred cCCcCceEeccccccccCCcchHHHHHHHHHHHHH
Confidence 445678999998753 57899999999866543
No 7
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]}
Probab=25.86 E-value=26 Score=21.80 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=19.1
Q ss_pred CCCCCCceeCCCCCeeeeccCCCC
Q 042339 10 NTPSIPCVLDPRGSAGICGDRLLA 33 (94)
Q Consensus 10 ~~~g~~~l~d~~~~lGlCGDWl~G 33 (94)
...+.-++|.++.++.++||.+..
T Consensus 148 Ht~~~~~~~~~~~~~l~~GD~~~~ 171 (230)
T d1ko3a_ 148 HSTDNLVVYVPSASVLYGGCAIYE 171 (230)
T ss_dssp SSTTCCEEEETTTTEEEEETTSCC
T ss_pred CCCCcceeecccCCcccccceecc
Confidence 445666899999999999998743
No 8
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}
Probab=24.21 E-value=21 Score=22.93 Aligned_cols=28 Identities=18% Similarity=-0.018 Sum_probs=21.8
Q ss_pred CCeeeec---c---CCCCCchHHHHHHHHHHHhc
Q 042339 22 GSAGICG---D---RLLASSSESAALSGWLLLSN 49 (94)
Q Consensus 22 ~~lGlCG---D---Wl~GgRVE~AwlSG~aLA~~ 49 (94)
.+|++|| | ||-|=...-||-||...+++
T Consensus 216 ~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~ 249 (253)
T d2gqfa1 216 SGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALS 249 (253)
T ss_dssp TTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHH
T ss_pred CCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHH
Confidence 4677777 5 67666789999999988765
No 9
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]}
Probab=23.61 E-value=29 Score=22.03 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=19.9
Q ss_pred CCCCCCCceeCCCCCeeeeccCCCC
Q 042339 9 TNTPSIPCVLDPRGSAGICGDRLLA 33 (94)
Q Consensus 9 ~~~~g~~~l~d~~~~lGlCGDWl~G 33 (94)
..+.+.-++|.++.++.+.||.+..
T Consensus 136 gHt~g~~~~~~~~~~vlf~GD~~~~ 160 (220)
T d1jjta_ 136 GHTPDNVVVWLPERKILFGGCFIKP 160 (220)
T ss_dssp SSSTTCCEEEETTTTEEEEETTCCT
T ss_pred CCCccccccccccccccccCceecC
Confidence 3455667999999999999998643
No 10
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}
Probab=23.31 E-value=29 Score=22.10 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=18.9
Q ss_pred CCCCCCCceeCCCCCeeeeccCCC
Q 042339 9 TNTPSIPCVLDPRGSAGICGDRLL 32 (94)
Q Consensus 9 ~~~~g~~~l~d~~~~lGlCGDWl~ 32 (94)
..+.+.-++|.++.++.++||-+.
T Consensus 142 gHt~g~~~~~~~~~~vLf~GD~~~ 165 (221)
T d1mqoa_ 142 GHTEDNIVVWLPQYNILVGGCLVK 165 (221)
T ss_dssp SSSSSCCEEEETTTTEEEEETTSC
T ss_pred CCCCCceEEEEcCCceEEecceec
Confidence 344566689999999999999753
Done!