Query 042342
Match_columns 87
No_of_seqs 109 out of 300
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 08:51:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_L 40S ribosomal protein S 100.0 8.8E-50 3E-54 286.6 10.1 81 1-81 41-121 (142)
2 3u5c_X RP37, S28, YS14, 40S ri 100.0 1.4E-49 4.7E-54 286.3 10.0 81 1-81 42-122 (145)
3 3j20_N 30S ribosomal protein S 100.0 1.1E-48 3.8E-53 282.1 10.0 81 1-81 43-124 (147)
4 2vqe_L 30S ribosomal protein S 100.0 1.4E-43 4.6E-48 252.8 7.3 73 1-81 26-98 (135)
5 2dgy_A MGC11102 protein; EIF-1 80.0 2.9 0.0001 28.0 4.6 35 30-65 29-64 (111)
6 1jt8_A EIF-1A, probable transl 70.9 2.4 8.1E-05 28.1 2.2 33 31-64 35-68 (102)
7 1d7q_A Translation initiation 65.2 4.8 0.00016 28.3 2.9 33 31-64 46-79 (143)
8 3i4o_A Translation initiation 58.4 7.6 0.00026 24.6 2.7 34 31-65 29-64 (79)
9 2wnv_C C1Q chain C, complement 58.0 15 0.00051 23.9 4.2 36 30-65 63-107 (131)
10 4f3j_A Complement C1Q tumor ne 34.7 58 0.002 21.3 4.2 36 30-65 62-108 (148)
11 3mtw_A L-arginine carboxypepti 33.7 19 0.00065 23.5 1.6 30 32-68 2-31 (403)
12 2wnv_B C1Q chain B, complement 33.3 56 0.0019 21.3 4.0 36 30-65 62-109 (136)
13 1wjj_A Hypothetical protein F2 31.7 1E+02 0.0035 21.0 5.2 40 27-68 60-99 (145)
14 1mg4_A Doublecortin, doublecor 30.4 21 0.00073 23.6 1.5 22 18-39 3-24 (113)
15 3jxo_A TRKA-N domain protein; 29.9 82 0.0028 18.0 5.9 27 34-65 45-71 (86)
16 1ah9_A IF1, initiation factor 26.9 55 0.0019 19.3 2.8 34 30-64 20-55 (71)
17 1hym_B CMTI-V, hydrolyzed cucu 24.2 35 0.0012 17.6 1.3 22 30-51 4-25 (26)
18 1o91_A Collagen alpha 1(VIII) 24.1 83 0.0028 21.7 3.7 37 29-65 106-152 (178)
19 1i4k_A Putative snRNP SM-like 23.6 75 0.0026 18.6 3.0 29 25-54 11-40 (77)
20 1h64_1 SnRNP SM-like protein; 22.7 78 0.0027 18.5 2.9 29 25-54 11-40 (75)
21 1gr3_A Collagen X; extracellul 22.1 1.1E+02 0.0037 20.7 3.9 36 30-65 89-134 (160)
22 2oqk_A Putative translation in 21.3 58 0.002 21.4 2.3 47 7-64 33-80 (117)
23 1d3b_B Protein (small nuclear 20.4 1.1E+02 0.0039 18.4 3.4 32 22-54 8-40 (91)
24 1jgn_B PAIP2, polyadenylate-bi 20.2 24 0.00084 18.5 0.2 9 74-82 12-20 (26)
No 1
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=100.00 E-value=8.8e-50 Score=286.56 Aligned_cols=81 Identities=65% Similarity=1.073 Sum_probs=80.2
Q ss_pred CCCCCCccceeEEeeeeeeecCCCcccccEEEEEEecCCcEEEEEeCCCCcccccccCCeEEEeecCCCCCCCCCCCCce
Q 042342 1 PFAGPSHAKGIVLEKIGIEAKQPNFAIRKCSRVQLIKNGKKIVTFVPSDGCLNYIEENDKVLIAGFGRKGHAVATSPPII 80 (87)
Q Consensus 1 pl~~~pq~kGivl~~~~~~pKkPNSA~RK~~rV~Likngk~v~A~IPg~G~ln~lqeh~~VLV~GfGr~g~~v~DlPGV~ 80 (87)
||+++||++|||+|++++||||||||+||||||||++||++||||||||||||||||||+|||+|||++|++++|||||+
T Consensus 41 pl~g~pq~kGIvl~~~~~~pKkPNSA~RK~arVqL~kNgk~vtAyIPg~G~l~~lqEh~~VLVrG~G~~ggrv~DlPGVr 120 (142)
T 2xzm_L 41 PFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVR 120 (142)
T ss_dssp TTTTCSEEEEEEEEEEEEECCTTCCCEEEEEEEEETTTCCEEEEECCSSSGGGTCCTTCEEEEEESSSSSSCCTTCSSCC
T ss_pred cccCCCccceEEEEEEecccCCCCcccccEEEEEEecCCeEEEEEeCCCCcccccccCCEEEEEecccCCCccCCCCCce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 042342 81 S 81 (87)
Q Consensus 81 y 81 (87)
|
T Consensus 121 y 121 (142)
T 2xzm_L 121 F 121 (142)
T ss_dssp E
T ss_pred E
Confidence 8
No 2
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=100.00 E-value=1.4e-49 Score=286.32 Aligned_cols=81 Identities=70% Similarity=1.173 Sum_probs=80.2
Q ss_pred CCCCCCccceeEEeeeeeeecCCCcccccEEEEEEecCCcEEEEEeCCCCcccccccCCeEEEeecCCCCCCCCCCCCce
Q 042342 1 PFAGPSHAKGIVLEKIGIEAKQPNFAIRKCSRVQLIKNGKKIVTFVPSDGCLNYIEENDKVLIAGFGRKGHAVATSPPII 80 (87)
Q Consensus 1 pl~~~pq~kGivl~~~~~~pKkPNSA~RK~~rV~Likngk~v~A~IPg~G~ln~lqeh~~VLV~GfGr~g~~v~DlPGV~ 80 (87)
||+++||++|||++++++||||||||+||||||||++||++||||||||||||||||||+|||+|||++|++++|||||+
T Consensus 42 ~l~g~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~G~l~~lqEh~~VLV~G~G~~Gg~v~DlPGVr 121 (145)
T 3u5c_X 42 PFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVR 121 (145)
T ss_dssp SSCSSSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCEEEEECCSSSCGGGCCTTCEEEEECCSSSSSCCSSSTTCC
T ss_pred ccCCCCccCeEEEEEeecccCCCCccceeEEEEEEccCCCEEEEEeCCCCccccCCcCCEEEEEeccccCCccCCCCcee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 042342 81 S 81 (87)
Q Consensus 81 y 81 (87)
|
T Consensus 122 y 122 (145)
T 3u5c_X 122 F 122 (145)
T ss_dssp E
T ss_pred E
Confidence 8
No 3
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-48 Score=282.10 Aligned_cols=81 Identities=52% Similarity=0.888 Sum_probs=80.0
Q ss_pred CCCCCCccceeEEeeeeeeecCCCcccccEEEEEEecCCcEEEEEeCCCCcccccccCCeEEEeecC-CCCCCCCCCCCc
Q 042342 1 PFAGPSHAKGIVLEKIGIEAKQPNFAIRKCSRVQLIKNGKKIVTFVPSDGCLNYIEENDKVLIAGFG-RKGHAVATSPPI 79 (87)
Q Consensus 1 pl~~~pq~kGivl~~~~~~pKkPNSA~RK~~rV~Likngk~v~A~IPg~G~ln~lqeh~~VLV~GfG-r~g~~v~DlPGV 79 (87)
||+++||++|||++++++||||||||+||||||||++||++||||||||||||||||||+|||+||| ++|++++|||||
T Consensus 43 ~l~g~pq~kGIvl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~Ghln~lqEh~~VLV~G~gg~~gg~v~DlPGV 122 (147)
T 3j20_N 43 PLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGI 122 (147)
T ss_dssp SSTTCSCEEEEEEEEEEEECCSSCCCEEEEEEEEETTTCCEEEEECCSSSGGGTCCTTCEEEEEECSCTTSCCCSSCSSC
T ss_pred hhhcCCccceEEEEEeecCCCCCCceeeeEEEEEEccCCcEEEEEcCCchhhcccccCCEEEEeeccCcCCCccCCCCce
Confidence 7999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ee
Q 042342 80 IS 81 (87)
Q Consensus 80 ~y 81 (87)
+|
T Consensus 123 ry 124 (147)
T 3j20_N 123 RY 124 (147)
T ss_dssp CE
T ss_pred eE
Confidence 98
No 4
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=100.00 E-value=1.4e-43 Score=252.81 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=71.9
Q ss_pred CCCCCCccceeEEeeeeeeecCCCcccccEEEEEEecCCcEEEEEeCCCCcccccccCCeEEEeecCCCCCCCCCCCCce
Q 042342 1 PFAGPSHAKGIVLEKIGIEAKQPNFAIRKCSRVQLIKNGKKIVTFVPSDGCLNYIEENDKVLIAGFGRKGHAVATSPPII 80 (87)
Q Consensus 1 pl~~~pq~kGivl~~~~~~pKkPNSA~RK~~rV~Likngk~v~A~IPg~G~ln~lqeh~~VLV~GfGr~g~~v~DlPGV~ 80 (87)
||+++||++|||+++++++|||||||+|||||||| +||++|||||||||| ||||||+||||| || ++|||||+
T Consensus 26 ~l~g~Pq~kGv~l~v~~~~pKKPNSA~RK~arVrL-~ngk~VtAyIPG~Gh--nlqEhs~VLVrG-gr----v~DlPGVr 97 (135)
T 2vqe_L 26 ALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRL-TSGYEVTAYIPGEGH--NLQEHSVVLIRG-GR----VKDLPGVR 97 (135)
T ss_dssp CSSSCSEEEEEESCCCEECCCTTCCCCEECCEEEE-TTSCEEEEECCSSCC--CCCTTCEEEEEE-CC----CTTSTTCC
T ss_pred cccCCCCcCeEEEEEEecCCCCCchhheeEEEEEc-CCCCEEEEEcCCCCC--ccCcCCEEEEcC-CC----cCCCCCee
Confidence 68999999999999999999999999999999999 999999999999999 999999999999 99 99999999
Q ss_pred e
Q 042342 81 S 81 (87)
Q Consensus 81 y 81 (87)
|
T Consensus 98 y 98 (135)
T 2vqe_L 98 Y 98 (135)
T ss_dssp E
T ss_pred E
Confidence 8
No 5
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.98 E-value=2.9 Score=27.98 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=27.9
Q ss_pred EEEEEEecCCcEEEEEeCCCCc-ccccccCCeEEEee
Q 042342 30 CSRVQLIKNGKKIVTFVPSDGC-LNYIEENDKVLIAG 65 (87)
Q Consensus 30 ~~rV~Likngk~v~A~IPg~G~-ln~lqeh~~VLV~G 65 (87)
-.+|+| -||.++.|+|||-=. --.|.+.|.|+|+=
T Consensus 29 ~f~V~l-~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 29 LHEVET-AQGQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp EEEEEC-TTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred EEEEEe-CCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 467898 899999999998643 12478999999974
No 6
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=70.86 E-value=2.4 Score=28.08 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=25.7
Q ss_pred EEEEEecCCcEEEEEeCCCCc-ccccccCCeEEEe
Q 042342 31 SRVQLIKNGKKIVTFVPSDGC-LNYIEENDKVLIA 64 (87)
Q Consensus 31 ~rV~Likngk~v~A~IPg~G~-ln~lqeh~~VLV~ 64 (87)
.+|+| -||.++.|+|||-=. --.|.+.|.|+|+
T Consensus 35 ~~V~l-~nG~~~la~i~GKmRk~IwI~~GD~VlVe 68 (102)
T 1jt8_A 35 VRVRC-LDGKTRLGRIPGRLKNRIWVREGDVVIVK 68 (102)
T ss_dssp EEEEE-ETTEEEEEECCHHHHHHHCCCSCEEEEEC
T ss_pred EEEEE-CCCCEEEEEEcccceeeEEecCCCEEEEE
Confidence 67899 899999999998421 1146788999986
No 7
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=65.23 E-value=4.8 Score=28.27 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.6
Q ss_pred EEEEEecCCcEEEEEeCCCCc-ccccccCCeEEEe
Q 042342 31 SRVQLIKNGKKIVTFVPSDGC-LNYIEENDKVLIA 64 (87)
Q Consensus 31 ~rV~Likngk~v~A~IPg~G~-ln~lqeh~~VLV~ 64 (87)
.+|+| -||.+++|+|||-=. --.|.+.|.|||+
T Consensus 46 f~V~l-~nG~~~La~I~GKmRk~IwI~~GD~VlVe 79 (143)
T 1d7q_A 46 LEAMC-FDGVKRLCHIRGKLRKKVWINTSDIILVG 79 (143)
T ss_dssp EEEEE-TTTEEEEEECCSGGGGSCCCCTTCEEEEE
T ss_pred EEEEe-CCCCEEEEEecccceeeEEecCCCEEEEe
Confidence 78999 999999999998532 1246788999997
No 8
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=58.44 E-value=7.6 Score=24.57 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=26.5
Q ss_pred EEEEEecCCcEEEEEeCCCCccc--ccccCCeEEEee
Q 042342 31 SRVQLIKNGKKIVTFVPSDGCLN--YIEENDKVLIAG 65 (87)
Q Consensus 31 ~rV~Likngk~v~A~IPg~G~ln--~lqeh~~VLV~G 65 (87)
.+|+| .||+.+.|+|+|-=--| .+-+.|.|+|+=
T Consensus 29 f~V~l-~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~ 64 (79)
T 3i4o_A 29 FRIEL-ENGHKVLAHISGKMRQHYIRILPEDRVVVEL 64 (79)
T ss_dssp EEEEE-TTSCEEEEEECHHHHHTTCCCCTTCEEEEEE
T ss_pred EEEEe-CCCCEEEEEeCcceecCCccCCCCCEEEEEE
Confidence 56898 89999999999853222 478899999873
No 9
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=57.95 E-value=15 Score=23.92 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=27.2
Q ss_pred EEEEEEecCCcEEEEEeCCCC---------cccccccCCeEEEee
Q 042342 30 CSRVQLIKNGKKIVTFVPSDG---------CLNYIEENDKVLIAG 65 (87)
Q Consensus 30 ~~rV~Likngk~v~A~IPg~G---------~ln~lqeh~~VLV~G 65 (87)
-+.|.|.+||..+.+|....+ .+-.|++.|+|-|+-
T Consensus 63 ~~~v~L~~Ng~~~~~~~~~~~~~~~~~S~~~~L~L~~GD~V~v~~ 107 (131)
T 2wnv_C 63 NLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAV 107 (131)
T ss_dssp CEEEEEEETTEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEE
T ss_pred eEEEEEEECCeEEEEEEecCCCcccEEeeeEEEEECCCCEEEEEE
Confidence 478999999988888865222 144789999999984
No 10
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=34.73 E-value=58 Score=21.27 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=25.2
Q ss_pred EEEEEEecCCcEEEEEeCCC---C--------cccccccCCeEEEee
Q 042342 30 CSRVQLIKNGKKIVTFVPSD---G--------CLNYIEENDKVLIAG 65 (87)
Q Consensus 30 ~~rV~Likngk~v~A~IPg~---G--------~ln~lqeh~~VLV~G 65 (87)
-..++|.+||..+....-.. + .+-.|++.|+|-|+=
T Consensus 62 ~~~~~L~kNg~~~~~~~~~~~~~~~~~~~s~s~il~L~~GD~V~v~~ 108 (148)
T 4f3j_A 62 SLQFDLVKNGESIASFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQV 108 (148)
T ss_dssp EEEEEEEETTEEEEEEEECCCSCSSCEEEEEEEEEEECTTCEEEEEC
T ss_pred ceEEEEEECCeEEEEEEeccCCCCccceEeeEEEEEcCCCCEEEEEE
Confidence 46789999998876553211 1 234699999999983
No 11
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=33.74 E-value=19 Score=23.53 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=14.8
Q ss_pred EEEEecCCcEEEEEeCCCCcccccccCCeEEEeecCC
Q 042342 32 RVQLIKNGKKIVTFVPSDGCLNYIEENDKVLIAGFGR 68 (87)
Q Consensus 32 rV~Likngk~v~A~IPg~G~ln~lqeh~~VLV~GfGr 68 (87)
.++.|+|++-+. |-.|. +-|+-.|+|++ |+
T Consensus 2 ~~~aI~narviD---~~~g~---~i~~~~V~I~d-G~ 31 (403)
T 3mtw_A 2 EIKAVSAARLLD---VASGK---YVDNPLVIVTD-GR 31 (403)
T ss_dssp CEEEEEEEEEEE---TTTTE---EEESEEEEEET-TE
T ss_pred CcEEEEceEEEE---CCCCc---EecCcEEEEEC-CE
Confidence 355556665542 33443 23344466666 54
No 12
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=33.27 E-value=56 Score=21.25 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=25.8
Q ss_pred EEEEEEecCCc---EEEEEeCC-C--------CcccccccCCeEEEee
Q 042342 30 CSRVQLIKNGK---KIVTFVPS-D--------GCLNYIEENDKVLIAG 65 (87)
Q Consensus 30 ~~rV~Likngk---~v~A~IPg-~--------G~ln~lqeh~~VLV~G 65 (87)
-+.|+|.+||. .+.+|-.. . ..+-.|++.|+|-|+-
T Consensus 62 ~~~v~L~~Ng~~v~~~~~~~~~~~~~~~~~S~~~~L~L~~GD~V~v~~ 109 (136)
T 2wnv_B 62 NLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQA 109 (136)
T ss_dssp CEEEEEEEESSSCEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEE
T ss_pred eEEEEEEECCcceEEEEEEEecCCCcccEEeeeEEEEECCCCEEEEEE
Confidence 47899999997 46666542 1 1245789999999985
No 13
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=31.75 E-value=1e+02 Score=21.02 Aligned_cols=40 Identities=8% Similarity=0.233 Sum_probs=26.6
Q ss_pred cccEEEEEEecCCcEEEEEeCCCCcccccccCCeEEEeecCC
Q 042342 27 IRKCSRVQLIKNGKKIVTFVPSDGCLNYIEENDKVLIAGFGR 68 (87)
Q Consensus 27 ~RK~~rV~Likngk~v~A~IPg~G~ln~lqeh~~VLV~GfGr 68 (87)
..+++.+.+ -..-=.+-|.-++-....+++-|.|.|++ +.
T Consensus 60 ~~~V~~~lV-gDeTG~I~ftlW~e~~~~l~~Gd~v~i~n-a~ 99 (145)
T 1wjj_A 60 PSRIVECLI-GDETGCILFTARNDQVDLMKPGATVILRN-SR 99 (145)
T ss_dssp CCCCEEEEE-ECSSCEEEEEECTTHHHHTCTTCEEEEEE-EE
T ss_pred CceEEEEEE-EcCCcEEEEEEecCCcCcCCCCCEEEEec-cE
Confidence 556666644 54333445555666666799999999998 54
No 14
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=30.39 E-value=21 Score=23.61 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=11.1
Q ss_pred eeecCCCcccccEEEEEEecCC
Q 042342 18 IEAKQPNFAIRKCSRVQLIKNG 39 (87)
Q Consensus 18 ~~pKkPNSA~RK~~rV~Likng 39 (87)
+.|+++=|..+|+-+|.+++||
T Consensus 3 ~~~~~~~~~~~kak~I~~yrNG 24 (113)
T 1mg4_A 3 MDPEFTLSSEKKAKKVRFYRNG 24 (113)
T ss_dssp ----------CCSEEEEEEETT
T ss_pred CCcccccCCCCCceEEEEEECC
Confidence 5789999999999999999997
No 15
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=29.93 E-value=82 Score=18.04 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=19.6
Q ss_pred EEecCCcEEEEEeCCCCcccccccCCeEEEee
Q 042342 34 QLIKNGKKIVTFVPSDGCLNYIEENDKVLIAG 65 (87)
Q Consensus 34 ~Likngk~v~A~IPg~G~ln~lqeh~~VLV~G 65 (87)
.+.+++.. ++|.... .|++.|.++|.|
T Consensus 45 ~I~R~~~~---~~p~~~~--~l~~GD~l~v~g 71 (86)
T 3jxo_A 45 AIVRGGVL---VVPRGDT--EILSGDKLYVIV 71 (86)
T ss_dssp EEEETTEE---ECCCTTC--BCCTTCEEEEEE
T ss_pred EEEECCEE---ECCCCCC--EECCCCEEEEEE
Confidence 34345543 3687777 899999999987
No 16
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=26.95 E-value=55 Score=19.30 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=24.9
Q ss_pred EEEEEEecCCcEEEEEeCCCCccc--ccccCCeEEEe
Q 042342 30 CSRVQLIKNGKKIVTFVPSDGCLN--YIEENDKVLIA 64 (87)
Q Consensus 30 ~~rV~Likngk~v~A~IPg~G~ln--~lqeh~~VLV~ 64 (87)
-.+|++ .||..+.|.++|-=-.+ .+-..|.|+|+
T Consensus 20 ~y~V~~-~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve 55 (71)
T 1ah9_A 20 MFRVEL-ENGHVVTAHISGKMRKNYIRILTGDKVTVE 55 (71)
T ss_dssp EEEEEE-TTSCEEEEEECSSGGGTTCCCCTTCEECCE
T ss_pred EEEEEE-CCCCEEEEEEcceEeccCccCCCCCEEEEE
Confidence 356787 89999999999974322 23478888886
No 17
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=24.24 E-value=35 Score=17.62 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=15.6
Q ss_pred EEEEEEecCCcEEEEEeCCCCc
Q 042342 30 CSRVQLIKNGKKIVTFVPSDGC 51 (87)
Q Consensus 30 ~~rV~Likngk~v~A~IPg~G~ 51 (87)
|-||++.-|..-+.+-+|-.|.
T Consensus 4 ~~RVrvfvd~~g~V~~~P~iG~ 25 (26)
T 1hym_B 4 CNRVRIWVNKRGLVVSPPRIGX 25 (26)
T ss_dssp TTEEEEEEETTTEEECCSBCC-
T ss_pred CCEEEEEECCCCcEEECCcccC
Confidence 4478887776667788887775
No 18
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=24.08 E-value=83 Score=21.72 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=25.7
Q ss_pred cEEEEEEecCCcEEEE-EeCC-CC--------cccccccCCeEEEee
Q 042342 29 KCSRVQLIKNGKKIVT-FVPS-DG--------CLNYIEENDKVLIAG 65 (87)
Q Consensus 29 K~~rV~Likngk~v~A-~IPg-~G--------~ln~lqeh~~VLV~G 65 (87)
+-+.|+|.+|+..+.. |-.. .+ .+-.|++.|+|-|+=
T Consensus 106 ~~~~v~L~~Ng~~i~~~~~~~~~~~~~~~S~s~vL~L~~GD~Vwl~l 152 (178)
T 1o91_A 106 GNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDQVFLQM 152 (178)
T ss_dssp EEEEEEEEETTEEEEEEEECCBTTBCEEEEEEEEEEECTTCEEEEEC
T ss_pred ceEEEEEEECCEEEEEEEcccCCCcceEEeEEEEEEECCCCEEEEEE
Confidence 3467999999987653 3321 22 245799999999985
No 19
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=23.60 E-value=75 Score=18.60 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=20.8
Q ss_pred cccccEEEEEEecCCcEEEEEeCC-CCcccc
Q 042342 25 FAIRKCSRVQLIKNGKKIVTFVPS-DGCLNY 54 (87)
Q Consensus 25 SA~RK~~rV~Likngk~v~A~IPg-~G~ln~ 54 (87)
+++-|-++|.| +||.++...+=+ |.+.|-
T Consensus 11 ~~~~~~V~V~L-~~g~~~~G~L~~~D~~mNl 40 (77)
T 1i4k_A 11 RSLKSPVIVRL-KGGREFRGTLDGYDIHMNL 40 (77)
T ss_dssp TTTTSEEEEEE-TTSCEEEEEEEEECTTCCE
T ss_pred HhCCCEEEEEE-cCCCEEEEEEEEEcCCCCe
Confidence 45678899999 999998876443 445553
No 20
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=22.69 E-value=78 Score=18.48 Aligned_cols=29 Identities=28% Similarity=0.130 Sum_probs=20.6
Q ss_pred cccccEEEEEEecCCcEEEEEeCC-CCcccc
Q 042342 25 FAIRKCSRVQLIKNGKKIVTFVPS-DGCLNY 54 (87)
Q Consensus 25 SA~RK~~rV~Likngk~v~A~IPg-~G~ln~ 54 (87)
+++-|-++|.| +||.++...+=+ |.+.|-
T Consensus 11 ~~~~~~V~V~l-~~g~~~~G~L~~~D~~mNl 40 (75)
T 1h64_1 11 RSLDKDVLVIL-KKGFEFRGRLIGYDIHLNV 40 (75)
T ss_dssp TTTTSEEEEEE-TTSEEEEEEEEEECTTCCE
T ss_pred HHCCCEEEEEE-CCCCEEEEEEEEEeCCCCe
Confidence 45668899999 999988866443 445543
No 21
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=22.07 E-value=1.1e+02 Score=20.73 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=25.3
Q ss_pred EEEEEEecCCcEEE-EEeCC-CC--------cccccccCCeEEEee
Q 042342 30 CSRVQLIKNGKKIV-TFVPS-DG--------CLNYIEENDKVLIAG 65 (87)
Q Consensus 30 ~~rV~Likngk~v~-A~IPg-~G--------~ln~lqeh~~VLV~G 65 (87)
-+.|+|.+|+..+. +|-.. .+ .+-.|++.|+|-|+-
T Consensus 89 ~~~v~L~~Ng~~i~~~~~~~~~~~~~~~S~s~vL~L~~GD~Vwv~~ 134 (160)
T 1gr3_A 89 HVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQL 134 (160)
T ss_dssp EEEEEEEETTEEEEEEEECCBTTBCEEEEEEEEEEECTTCEEEEEC
T ss_pred eEEEEEEECCEEEEEEeeccCCCcccEEeEEEEEEECCCCEEEEEE
Confidence 46799999998764 33321 22 244799999999985
No 22
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=21.26 E-value=58 Score=21.39 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=33.1
Q ss_pred ccceeEEeeeeeeecCCCcccccEEEEEEecCCcEEEEEeCCCCc-ccccccCCeEEEe
Q 042342 7 HAKGIVLEKIGIEAKQPNFAIRKCSRVQLIKNGKKIVTFVPSDGC-LNYIEENDKVLIA 64 (87)
Q Consensus 7 q~kGivl~~~~~~pKkPNSA~RK~~rV~Likngk~v~A~IPg~G~-ln~lqeh~~VLV~ 64 (87)
|..|.|++.++ | --.+|++ .||..+.|+|||-=. -..+...|.|+|+
T Consensus 33 e~~G~Vi~~lg------n----~~y~V~~-~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve 80 (117)
T 2oqk_A 33 QEYGQVQRMLG------N----GRLDAYC-FDGQKRLCHIRGKMRKKVWVNPGDIVLVS 80 (117)
T ss_dssp EEEEEEEEEEE------T----TEEEEEE-TTSCEEEEECCHHHHHHSCCCTTCEEEEE
T ss_pred EEEEEEEEEcC------C----CEEEEEe-CCCCEEEEEEcCceecCCcCCCCCEEEEE
Confidence 55677777665 2 2467888 899999999998532 1124488999986
No 23
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=20.38 E-value=1.1e+02 Score=18.42 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=23.2
Q ss_pred CCCcccccEEEEEEecCCcEEEEEeCC-CCcccc
Q 042342 22 QPNFAIRKCSRVQLIKNGKKIVTFVPS-DGCLNY 54 (87)
Q Consensus 22 kPNSA~RK~~rV~Likngk~v~A~IPg-~G~ln~ 54 (87)
+=++.+-|-++|.| +||+++...+=+ |.|+|-
T Consensus 8 ~L~~~~~k~V~V~l-~~gr~~~G~L~~~D~~mNl 40 (91)
T 1d3b_B 8 KMLQHIDYRMRCIL-QDGRIFIGTFKAFDKHMNL 40 (91)
T ss_dssp CCGGGTTSEEEEEE-TTCCEEEEEEEECCTTCCE
T ss_pred HHHHHcCCcEEEEE-CCCeEEEEEEEEECCCCeE
Confidence 33667788899999 999998876443 555553
No 24
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=20.19 E-value=24 Score=18.48 Aligned_cols=9 Identities=11% Similarity=-0.090 Sum_probs=6.2
Q ss_pred CCCCCceec
Q 042342 74 ATSPPIISL 82 (87)
Q Consensus 74 ~DlPGV~y~ 82 (87)
.=.|||+|=
T Consensus 12 ef~pgvkyg 20 (26)
T 1jgn_B 12 EFVPGVKYG 20 (26)
T ss_dssp CCCTTSCTT
T ss_pred hcCCCceec
Confidence 346888873
Done!