RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 042342
(87 letters)
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 55.1 bits (133), Expect = 4e-12
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 1 PFAGPSHAKGIVLEKIGIEAKQPNFAIRKCSRVQLIKNGKKIVTFVPSDGCLNYIEENDK 60
G +G+ + K+PN A+RK ++V+ + +G ++ ++P +G + ++E+
Sbjct: 22 ALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVR-LTSGYEVTAYIPGEG--HNLQEHSV 78
Query: 61 VLIAGFGRKG 70
VLI G GR
Sbjct: 79 VLIRG-GRVK 87
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 132
Score = 25.6 bits (55), Expect = 0.65
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 60 KVLIAGFGRKGHAVA 74
++IAG GR G+ +A
Sbjct: 2 YIIIAGIGRVGYTLA 16
>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit
TTHA0048 {Thermus thermophilus [TaxId: 274]}
Length = 116
Score = 25.2 bits (55), Expect = 0.90
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 12 VLEKIGIEAKQPNFAIRKCSRVQLIKNG 39
LE G+EA+ P AIR +V L+
Sbjct: 44 FLELQGLEARSPRAAIRGAFQVGLLPED 71
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 25.2 bits (55), Expect = 1.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 48 SDGCLNYIEENDKVLIAGFGRKGHAVA 74
D L+ I+ KV I G+G +GHA A
Sbjct: 7 KDCDLSIIQ-GKKVAIIGYGSQGHAHA 32
>d1l3aa_ d.18.1.2 (A:) Plant transcriptional regulator PBF-2
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 166
Score = 24.8 bits (54), Expect = 1.6
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 18 IEAKQPNFAIRKCSRVQLIKNGKKIVTFVPSDGCLNY 54
+E + P F+ +L + G ++ F P+ G Y
Sbjct: 19 VEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQY 55
>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 122
Score = 24.7 bits (53), Expect = 1.6
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 13 LEKIGIEAKQPNFAIRKCSRVQLIKNGKKIVTFVPSDGCLNYIEENDKVLIA 64
+E+ GI+ F K +++ G+ VT ++ +E + VL+A
Sbjct: 70 MEEHGIKFI-RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLA 120
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel
Kch {Escherichia coli [TaxId: 562]}
Length = 153
Score = 24.4 bits (52), Expect = 1.8
Identities = 2/16 (12%), Positives = 4/16 (25%)
Query: 59 DKVLIAGFGRKGHAVA 74
D ++ G
Sbjct: 4 DHFIVCGHSILAINTI 19
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus
faecalis [TaxId: 1351]}
Length = 364
Score = 24.7 bits (53), Expect = 2.1
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 7 HAKGIVLEKIGIEAKQPNFAIRKCSRVQLIKNGKKIVTFVPSDGC-LNYIEENDKVLIAG 65
AKG L+ + N I+ ++ ++ +N++ ND V++
Sbjct: 258 DAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQ 317
Query: 66 FGRKGHAVA 74
+G + +A
Sbjct: 318 YGDENDRLA 326
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 24.3 bits (52), Expect = 2.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 45 FVPSDGCLNYIEENDKVLIAGFGRKGHAVA 74
F PS L ++ + KVL+ G G G +
Sbjct: 24 FEPSTESLQFLLDTCKVLVIGAGGLGCELL 53
>d1iq8a4 d.17.6.1 (A:361-505) Archaeosine tRNA-guanine
transglycosylase, C2 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 145
Score = 23.6 bits (51), Expect = 3.3
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 24 NFAIRKCSRV-QLIKNGKKIVTFVPSDGCL 52
+ K Q+ NGK++ T DG L
Sbjct: 100 KVELSKTGMPRQVKVNGKRLATVRADDGLL 129
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}
Length = 350
Score = 24.0 bits (51), Expect = 3.7
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 24 NFAIRKCSRVQLIKNGKKIVTFVPSDGCLNYIEE--NDKVLIAGFGRKGHAVATSPPIIS 81
A + L+ N I + + IE + I G G +GH +PPI
Sbjct: 159 TLANEVDPKAHLMYNDYNIERTGKREATVEMIERLQKRGMPIHGLGIQGHLGIDTPPIAE 218
Query: 82 LKGCM 86
++ +
Sbjct: 219 IEKSI 223
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein
MthK {Archaeon Methanothermobacter thermautotrophicus
[TaxId: 145262]}
Length = 129
Score = 23.7 bits (50), Expect = 3.8
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 61 VLIAGFGRKGHAVA 74
V+I G+
Sbjct: 3 VVICGWSESTLECL 16
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 23.3 bits (49), Expect = 4.8
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 53 NYIEENDKVLIAGFG 67
I+ VL+ FG
Sbjct: 117 GRIKPGQLVLLEAFG 131
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 23.3 bits (49), Expect = 4.9
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 60 KVLIAGFGRKGHAVA 74
+ + G GR G ++
Sbjct: 2 QFAVIGLGRFGGSIV 16
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH)
{Thermus thermophilus [TaxId: 274]}
Length = 149
Score = 23.2 bits (49), Expect = 5.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 53 NYIEENDKVLIAGFG 67
I E D VL+ FG
Sbjct: 120 GRIREGDHVLLVSFG 134
>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase
{Frog (Rana perezi) [TaxId: 8403]}
Length = 198
Score = 22.9 bits (48), Expect = 6.9
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 46 VPSDGCLNYIEENDKVLIAGFGRKGHAV 73
V + L+ I + ++L +G G + +
Sbjct: 170 VSTKLTLDQINKAFELLSSGQGVRSIMI 197
>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the
r1128 polyketide biosynthetic pathway {Streptomyces sp.
r1128 [TaxId: 140437]}
Length = 153
Score = 22.7 bits (48), Expect = 7.5
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 53 NYIEENDKVLIAGFG 67
+ L+ GFG
Sbjct: 122 GAVPGGGPALMIGFG 136
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 22.4 bits (47), Expect = 7.8
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 25 FAIRKCSRVQLIKNGKKIVTFV 46
I Q +N +I +
Sbjct: 70 NNISATPTFQFFRNKVRIDQYQ 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.421
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,729
Number of extensions: 14043
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 27
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)