BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042344
         (302 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric
           Cell Cycle Transcription Factor E2f-Dp
          Length = 76

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 44/83 (53%), Gaps = 14/83 (16%)

Query: 73  SRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLS 132
           SR EKSLGLLT  FV L   +       D V  L L  A +T  +R K RR+YDI NVL 
Sbjct: 6   SRHEKSLGLLTTKFVSLLQEAK------DGVLDLKL--AADTLAVRQK-RRIYDITNVLE 56

Query: 133 SMNLIEKTHTADTRKPAFRWLGV 155
            + LIEK       K + +W GV
Sbjct: 57  GIGLIEK-----KSKNSIQWKGV 74


>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric
           Cell Cycle Transcription Factor E2f-Dp
          Length = 95

 Score = 30.8 bits (68), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%)

Query: 122 RRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGV 155
           RR+YD  NVL +MN+I K       K   +W+G+
Sbjct: 62  RRVYDALNVLMAMNIISK------EKKEIKWIGL 89


>pdb|1V2I|A Chain A, Structure Of The Hemagglutinin-neuraminidase From Human
           Parainfluenza Virus Type Iii
 pdb|1V2I|B Chain B, Structure Of The Hemagglutinin-neuraminidase From Human
           Parainfluenza Virus Type Iii
 pdb|1V3B|A Chain A, Structure Of The Hemagglutinin-Neuraminidase From Human
           Parainfluenza Virus Type Iii
 pdb|1V3B|B Chain B, Structure Of The Hemagglutinin-Neuraminidase From Human
           Parainfluenza Virus Type Iii
 pdb|1V3C|A Chain A, Structure Of The Hemagglutinin-Neuraminidase From Human
           Parainfluenza Virus Type Iii: Complex With Neu5ac
 pdb|1V3C|B Chain B, Structure Of The Hemagglutinin-Neuraminidase From Human
           Parainfluenza Virus Type Iii: Complex With Neu5ac
 pdb|1V3D|A Chain A, Structure Of The Hemagglutinin-Neuraminidase From Human
           Parainfluenza Virus Type Iii: Complex With Neu5ac2en
 pdb|1V3D|B Chain B, Structure Of The Hemagglutinin-Neuraminidase From Human
           Parainfluenza Virus Type Iii: Complex With Neu5ac2en
 pdb|1V3E|A Chain A, Structure Of The Hemagglutinin-Neuraminidase From Human
           Parainfluenza Virus Type Iii: Complex With Zanamavir
 pdb|1V3E|B Chain B, Structure Of The Hemagglutinin-Neuraminidase From Human
           Parainfluenza Virus Type Iii: Complex With Zanamavir
          Length = 431

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 60  LNPRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVD 96
           LNPR +H  + ND+R+  SL LL  +  +L     VD
Sbjct: 98  LNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVD 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,904,435
Number of Sequences: 62578
Number of extensions: 285156
Number of successful extensions: 778
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 3
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)