Query 042344
Match_columns 302
No_of_seqs 194 out of 350
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 08:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf7_A Protein (transcription 99.9 3.8E-27 1.3E-31 182.4 6.9 72 70-156 3-75 (76)
2 1cf7_B Protein (transcription 99.6 6.3E-16 2.2E-20 124.6 4.1 80 70-157 3-91 (95)
3 2aze_B Transcription factor E2 92.8 0.075 2.6E-06 43.0 3.5 34 171-204 6-39 (106)
4 2kgf_A Capsid protein P27; ret 85.8 0.081 2.8E-06 45.2 -1.7 52 234-296 33-84 (140)
5 2v4x_A JSRV capsid, capsid pro 82.0 0.17 5.9E-06 43.2 -1.2 52 234-296 28-79 (140)
6 2xvc_A ESCRT-III, SSO0910; cel 76.1 4.7 0.00016 30.0 5.0 44 84-138 13-56 (59)
7 2htj_A P fimbrial regulatory p 71.4 11 0.00039 27.2 6.2 44 85-140 4-47 (81)
8 1qgp_A Protein (double strande 70.2 7.6 0.00026 28.8 5.1 47 84-140 17-64 (77)
9 1oyi_A Double-stranded RNA-bin 70.2 9.2 0.00032 29.6 5.7 60 76-153 12-71 (82)
10 1p7n_A GAG polyprotein capsid 68.9 1 3.6E-05 39.7 0.1 53 234-297 57-109 (176)
11 3r0a_A Putative transcriptiona 65.7 9.1 0.00031 30.1 5.0 47 84-141 29-76 (123)
12 2heo_A Z-DNA binding protein 1 61.5 15 0.0005 26.3 5.0 48 82-140 11-58 (67)
13 2d1h_A ST1889, 109AA long hypo 61.1 9.1 0.00031 27.7 4.0 37 95-141 34-70 (109)
14 3eco_A MEPR; mutlidrug efflux 60.8 13 0.00044 28.3 5.0 46 86-141 36-81 (139)
15 3bro_A Transcriptional regulat 60.6 20 0.0007 27.0 6.1 46 86-141 39-84 (141)
16 1qbj_A Protein (double-strande 60.4 16 0.00054 27.6 5.3 48 83-140 12-60 (81)
17 1ku9_A Hypothetical protein MJ 58.9 22 0.00076 26.8 6.0 45 85-140 30-74 (152)
18 1sfx_A Conserved hypothetical 56.6 14 0.00047 26.6 4.3 45 85-141 24-68 (109)
19 1r7j_A Conserved hypothetical 56.1 43 0.0015 25.5 7.2 70 98-193 21-90 (95)
20 2y75_A HTH-type transcriptiona 55.2 22 0.00077 27.6 5.6 45 86-140 14-59 (129)
21 2frh_A SARA, staphylococcal ac 51.5 31 0.0011 26.5 5.8 46 86-141 42-87 (127)
22 1y0u_A Arsenical resistance op 51.3 16 0.00055 26.9 4.0 35 96-140 42-76 (96)
23 2pg4_A Uncharacterized protein 50.9 18 0.0006 26.6 4.1 53 77-139 9-63 (95)
24 4e17_B Catenin alpha-1; four h 49.7 7.2 0.00025 26.9 1.6 12 272-283 25-36 (40)
25 2fu4_A Ferric uptake regulatio 49.3 21 0.00072 25.5 4.2 51 86-141 22-72 (83)
26 3fiw_A Putative TETR-family tr 47.9 16 0.00055 30.4 3.9 39 69-107 17-55 (211)
27 3i53_A O-methyltransferase; CO 46.8 15 0.00051 32.5 3.7 42 86-140 30-71 (332)
28 3gwz_A MMCR; methyltransferase 46.8 18 0.00061 33.0 4.3 37 94-140 68-104 (369)
29 1ub9_A Hypothetical protein PH 46.6 21 0.00071 25.7 3.8 35 96-140 29-63 (100)
30 2r3s_A Uncharacterized protein 46.4 13 0.00043 32.7 3.1 35 96-140 38-72 (335)
31 4b8x_A SCO5413, possible MARR- 46.3 23 0.00078 28.0 4.4 44 88-141 42-85 (147)
32 2ip2_A Probable phenazine-spec 45.9 21 0.00071 31.5 4.4 35 96-140 40-74 (334)
33 3deu_A Transcriptional regulat 45.8 51 0.0017 26.4 6.4 35 97-141 68-102 (166)
34 2qko_A Possible transcriptiona 44.9 14 0.00049 29.5 3.0 34 74-107 25-58 (215)
35 1x19_A CRTF-related protein; m 44.6 16 0.00054 32.9 3.5 36 95-140 62-97 (359)
36 1xn7_A Hypothetical protein YH 44.1 31 0.0011 25.8 4.6 44 85-140 6-49 (78)
37 3cuo_A Uncharacterized HTH-typ 44.0 42 0.0014 24.0 5.2 36 95-140 36-71 (99)
38 2kko_A Possible transcriptiona 44.0 24 0.00083 26.8 4.0 35 96-140 37-71 (108)
39 2jt1_A PEFI protein; solution 43.7 46 0.0016 24.9 5.4 47 95-153 22-68 (77)
40 2cfx_A HTH-type transcriptiona 43.7 33 0.0011 27.1 4.9 47 82-140 6-52 (144)
41 3lst_A CALO1 methyltransferase 43.4 17 0.00057 32.7 3.5 36 95-140 53-88 (348)
42 2x4h_A Hypothetical protein SS 41.5 42 0.0014 25.7 5.1 36 95-140 29-64 (139)
43 2k02_A Ferrous iron transport 41.5 34 0.0012 26.4 4.5 44 85-140 6-49 (87)
44 3jth_A Transcription activator 41.4 25 0.00087 25.7 3.7 35 96-140 35-69 (98)
45 2hr3_A Probable transcriptiona 41.2 29 0.001 26.4 4.2 37 95-141 48-84 (147)
46 2fsw_A PG_0823 protein; alpha- 40.6 35 0.0012 25.7 4.4 55 75-141 15-73 (107)
47 3cdh_A Transcriptional regulat 40.5 38 0.0013 26.2 4.7 35 96-140 56-90 (155)
48 1p6r_A Penicillinase repressor 39.9 49 0.0017 23.5 5.0 49 84-140 12-60 (82)
49 3nqo_A MARR-family transcripti 39.9 49 0.0017 27.1 5.6 45 87-141 47-91 (189)
50 2qww_A Transcriptional regulat 38.7 66 0.0022 24.7 5.9 42 86-139 46-87 (154)
51 3jw4_A Transcriptional regulat 38.7 19 0.00066 27.8 2.7 42 89-140 49-90 (148)
52 2fbh_A Transcriptional regulat 38.2 54 0.0019 24.7 5.2 37 95-141 50-86 (146)
53 2gxg_A 146AA long hypothetical 37.7 67 0.0023 24.2 5.7 37 95-141 48-84 (146)
54 1r1u_A CZRA, repressor protein 37.2 22 0.00076 26.7 2.8 35 96-140 38-72 (106)
55 3hsr_A HTH-type transcriptiona 37.1 35 0.0012 26.1 4.0 37 95-141 48-84 (140)
56 1i1g_A Transcriptional regulat 37.1 45 0.0016 25.7 4.7 45 84-140 7-51 (141)
57 2cg4_A Regulatory protein ASNC 37.0 44 0.0015 26.5 4.7 50 79-140 6-55 (152)
58 2oqg_A Possible transcriptiona 36.8 42 0.0014 24.8 4.3 42 86-140 26-67 (114)
59 2p5v_A Transcriptional regulat 36.7 43 0.0015 26.9 4.7 50 79-140 8-57 (162)
60 2lkp_A Transcriptional regulat 36.7 23 0.00077 26.9 2.8 35 96-140 44-78 (119)
61 3pfi_A Holliday junction ATP-d 36.7 34 0.0012 30.0 4.3 52 79-140 261-313 (338)
62 3nrv_A Putative transcriptiona 36.6 46 0.0016 25.4 4.6 43 86-140 45-87 (148)
63 3g3z_A NMB1585, transcriptiona 36.6 40 0.0014 25.7 4.2 35 97-141 45-79 (145)
64 1tbx_A ORF F-93, hypothetical 36.4 33 0.0011 25.0 3.6 36 95-140 20-59 (99)
65 2cyy_A Putative HTH-type trans 35.9 46 0.0016 26.4 4.7 50 79-140 5-54 (151)
66 1qzz_A RDMB, aclacinomycin-10- 35.8 31 0.0011 30.8 4.0 35 96-140 48-82 (374)
67 2pn6_A ST1022, 150AA long hypo 35.5 47 0.0016 26.1 4.6 45 84-140 6-50 (150)
68 2dbb_A Putative HTH-type trans 35.4 42 0.0014 26.5 4.3 50 79-140 7-56 (151)
69 3oop_A LIN2960 protein; protei 35.1 40 0.0014 25.7 4.0 36 96-141 50-85 (143)
70 3mq0_A Transcriptional repress 35.0 58 0.002 28.9 5.6 53 77-140 24-78 (275)
71 4e18_B Catenin alpha-1; four h 34.2 17 0.00058 27.0 1.6 12 272-283 44-55 (59)
72 1on2_A Transcriptional regulat 34.0 53 0.0018 25.3 4.6 35 96-140 21-55 (142)
73 2w25_A Probable transcriptiona 33.6 55 0.0019 25.8 4.8 50 79-140 5-54 (150)
74 2a61_A Transcriptional regulat 33.6 45 0.0016 25.2 4.1 35 96-140 46-80 (145)
75 2o0y_A Transcriptional regulat 33.2 70 0.0024 28.0 5.8 36 95-140 36-71 (260)
76 3dp7_A SAM-dependent methyltra 33.0 32 0.0011 31.2 3.6 35 96-140 49-83 (363)
77 2nnn_A Probable transcriptiona 33.0 41 0.0014 25.2 3.7 34 97-140 52-85 (140)
78 3bja_A Transcriptional regulat 32.4 41 0.0014 25.1 3.6 44 86-141 38-81 (139)
79 1j5y_A Transcriptional regulat 32.3 63 0.0022 26.8 5.1 45 85-140 25-70 (187)
80 3bdd_A Regulatory protein MARR 32.2 32 0.0011 25.9 3.0 36 96-141 44-79 (142)
81 3tgn_A ADC operon repressor AD 32.1 77 0.0026 23.9 5.2 44 85-141 42-85 (146)
82 3u2r_A Regulatory protein MARR 32.0 35 0.0012 27.0 3.4 36 96-141 61-96 (168)
83 2fa5_A Transcriptional regulat 31.9 36 0.0012 26.5 3.3 35 96-140 62-96 (162)
84 2ia0_A Putative HTH-type trans 31.8 58 0.002 26.9 4.8 50 79-140 15-64 (171)
85 3fm5_A Transcriptional regulat 31.8 46 0.0016 25.6 4.0 36 96-141 53-88 (150)
86 1lj9_A Transcriptional regulat 31.7 59 0.002 24.6 4.5 36 96-141 42-77 (144)
87 1s3j_A YUSO protein; structura 31.6 52 0.0018 25.2 4.2 36 96-141 50-85 (155)
88 2bv6_A MGRA, HTH-type transcri 31.5 36 0.0012 25.8 3.2 36 96-141 50-85 (142)
89 1jgs_A Multiple antibiotic res 31.3 35 0.0012 25.7 3.1 36 96-141 47-82 (138)
90 3bj6_A Transcriptional regulat 31.0 63 0.0022 24.6 4.6 36 96-141 53-88 (152)
91 1ylf_A RRF2 family protein; st 30.9 77 0.0026 25.5 5.3 37 94-140 27-63 (149)
92 3f3x_A Transcriptional regulat 30.9 56 0.0019 24.8 4.3 42 86-140 42-83 (144)
93 3bpv_A Transcriptional regulat 30.9 28 0.00095 26.2 2.4 35 96-140 42-76 (138)
94 1u2w_A CADC repressor, cadmium 30.9 44 0.0015 25.9 3.7 43 86-140 47-89 (122)
95 3pqk_A Biofilm growth-associat 30.8 76 0.0026 23.3 4.8 35 96-140 35-69 (102)
96 3rkx_A Biotin-[acetyl-COA-carb 30.5 87 0.003 28.8 6.2 58 83-155 5-63 (323)
97 3cjn_A Transcriptional regulat 30.4 42 0.0014 26.1 3.5 36 96-141 65-100 (162)
98 1okr_A MECI, methicillin resis 30.4 61 0.0021 24.2 4.3 49 84-140 13-61 (123)
99 2wte_A CSA3; antiviral protein 30.3 46 0.0016 29.6 4.2 50 79-140 150-199 (244)
100 1mzb_A Ferric uptake regulatio 29.9 78 0.0027 25.0 5.1 61 86-152 23-83 (136)
101 2e1c_A Putative HTH-type trans 29.8 63 0.0022 26.7 4.7 50 79-140 25-74 (171)
102 2yua_A Williams-beuren syndrom 29.6 1.7E+02 0.0059 22.0 6.8 44 75-127 27-81 (99)
103 4hbl_A Transcriptional regulat 29.3 44 0.0015 25.9 3.4 36 96-141 54-89 (149)
104 2eth_A Transcriptional regulat 29.2 38 0.0013 26.3 3.0 36 96-141 57-92 (154)
105 1yyv_A Putative transcriptiona 28.8 52 0.0018 26.1 3.9 57 74-141 24-83 (131)
106 1wi9_A Protein C20ORF116 homol 28.5 1.1E+02 0.0036 23.4 5.3 46 83-140 9-54 (72)
107 2nyx_A Probable transcriptiona 28.4 53 0.0018 26.1 3.8 36 96-141 58-93 (168)
108 2xrn_A HTH-type transcriptiona 28.0 72 0.0025 27.5 4.9 44 86-140 11-54 (241)
109 3qph_A TRMB, A global transcri 27.9 9.6 0.00033 35.5 -0.8 34 97-140 32-65 (342)
110 3boq_A Transcriptional regulat 27.9 51 0.0018 25.5 3.6 35 96-140 61-95 (160)
111 2rdp_A Putative transcriptiona 27.8 55 0.0019 24.9 3.7 36 96-141 55-90 (150)
112 3s2w_A Transcriptional regulat 27.3 81 0.0028 24.5 4.7 36 96-141 63-98 (159)
113 2o03_A Probable zinc uptake re 27.2 99 0.0034 24.2 5.2 59 78-142 6-66 (131)
114 2pex_A Transcriptional regulat 27.1 37 0.0013 26.1 2.7 36 96-141 60-95 (153)
115 2f2e_A PA1607; transcription f 26.6 47 0.0016 26.7 3.2 54 75-141 14-71 (146)
116 3mcz_A O-methyltransferase; ad 26.6 47 0.0016 29.4 3.6 34 97-140 56-89 (352)
117 1fp2_A Isoflavone O-methyltran 26.5 48 0.0016 29.6 3.6 35 96-140 50-87 (352)
118 1z91_A Organic hydroperoxide r 26.4 35 0.0012 26.0 2.3 36 96-141 53-88 (147)
119 1tw3_A COMT, carminomycin 4-O- 26.1 57 0.0019 29.0 4.0 35 96-140 51-85 (360)
120 2hzt_A Putative HTH-type trans 26.1 85 0.0029 23.6 4.5 38 95-141 25-62 (107)
121 2fbi_A Probable transcriptiona 26.0 28 0.00094 26.2 1.7 34 97-140 50-83 (142)
122 3ech_A MEXR, multidrug resista 25.7 46 0.0016 25.3 2.9 44 86-141 42-85 (142)
123 1mkm_A ICLR transcriptional re 25.6 1.2E+02 0.004 26.2 5.8 44 86-140 13-56 (249)
124 3k0l_A Repressor protein; heli 25.2 59 0.002 25.5 3.5 36 96-141 59-94 (162)
125 2dk5_A DNA-directed RNA polyme 25.2 1.7E+02 0.0058 22.2 6.0 54 77-140 16-69 (91)
126 3k69_A Putative transcription 24.9 1.3E+02 0.0046 24.8 5.8 46 85-140 16-61 (162)
127 3r4k_A Transcriptional regulat 24.8 68 0.0023 28.1 4.2 36 95-140 19-54 (260)
128 1y6u_A XIS, excisionase from t 24.2 46 0.0016 24.5 2.5 40 95-157 14-53 (70)
129 2qby_A CDC6 homolog 1, cell di 23.6 1.1E+02 0.0039 26.4 5.3 21 120-140 328-348 (386)
130 1zg3_A Isoflavanone 4'-O-methy 23.3 52 0.0018 29.5 3.2 35 96-140 44-81 (358)
131 3i4p_A Transcriptional regulat 23.3 1E+02 0.0036 24.8 4.8 48 82-141 4-51 (162)
132 3dcf_A Transcriptional regulat 23.3 78 0.0027 24.7 3.9 44 72-125 26-69 (218)
133 2g9w_A Conserved hypothetical 23.2 1.4E+02 0.0047 23.3 5.4 48 86-140 14-61 (138)
134 1r1t_A Transcriptional repress 23.0 84 0.0029 24.5 4.0 35 96-140 58-92 (122)
135 1ys7_A Transcriptional regulat 23.0 1.1E+02 0.0039 24.6 4.9 62 79-140 160-223 (233)
136 1hsj_A Fusion protein consisti 22.9 1.1E+02 0.0037 28.3 5.4 36 96-141 419-454 (487)
137 4a6d_A Hydroxyindole O-methylt 22.9 90 0.0031 28.3 4.7 43 87-140 34-76 (353)
138 3oio_A Transcriptional regulat 21.9 1.3E+02 0.0046 22.3 4.8 40 82-131 8-47 (113)
139 2g7u_A Transcriptional regulat 21.6 79 0.0027 27.5 3.9 36 95-140 27-62 (257)
140 3e6m_A MARR family transcripti 21.5 56 0.0019 25.6 2.7 36 96-141 66-101 (161)
141 2vn2_A DNAD, chromosome replic 21.5 91 0.0031 24.6 4.0 36 96-141 50-85 (128)
142 2zqm_A Prefoldin beta subunit 21.5 2E+02 0.0067 21.8 5.8 73 122-200 34-106 (117)
143 2jsc_A Transcriptional regulat 20.9 48 0.0016 25.5 2.2 42 86-140 26-67 (118)
144 2fe3_A Peroxide operon regulat 20.8 1.7E+02 0.0057 23.4 5.5 60 86-152 27-86 (145)
145 3oou_A LIN2118 protein; protei 20.8 1.1E+02 0.0039 22.6 4.2 42 82-133 6-47 (108)
146 3f6o_A Probable transcriptiona 20.8 53 0.0018 25.1 2.3 42 86-140 23-64 (118)
147 1fp1_D Isoliquiritigenin 2'-O- 20.4 61 0.0021 29.3 3.0 33 98-140 63-101 (372)
148 2ia2_A Putative transcriptiona 20.2 85 0.0029 27.5 3.9 43 87-140 27-69 (265)
No 1
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.94 E-value=3.8e-27 Score=182.38 Aligned_cols=72 Identities=44% Similarity=0.676 Sum_probs=64.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCcccccc-chhhhhhHHHHHhhhhhheecccCCCCCC
Q 042344 70 KNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRT-KVRRLYDIANVLSSMNLIEKTHTADTRKP 148 (302)
Q Consensus 70 k~~~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kv-kkRRLYDItNVLEgIgLIEK~~~~~~sKn 148 (302)
...+|+++||++||++||+||.++++++++|++||+.| .+ ++||||||+|||||||||+|. +||
T Consensus 3 ~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L----------~v~~kRRiYDI~NVLe~igli~K~-----~k~ 67 (76)
T 1cf7_A 3 GTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTL----------AVRQKRRIYDITNVLEGIGLIEKK-----SKN 67 (76)
T ss_dssp ---CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHT----------TTCCTHHHHHHHHHHHHHTSEEEE-----ETT
T ss_pred CCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHh----------CCccceehhhHHHHHhHhcceeec-----CCC
Confidence 45689999999999999999999999999999999999 67 999999999999999999999 899
Q ss_pred cEEeeccc
Q 042344 149 AFRWLGVN 156 (302)
Q Consensus 149 ~iqWiG~~ 156 (302)
.|+|+|.+
T Consensus 68 ~~~W~G~~ 75 (76)
T 1cf7_A 68 SIQWKGVG 75 (76)
T ss_dssp EEEEC---
T ss_pred cEEEeCCC
Confidence 99999976
No 2
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.58 E-value=6.3e-16 Score=124.65 Aligned_cols=80 Identities=28% Similarity=0.441 Sum_probs=64.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCc---------cccccchhhhhhHHHHHhhhhhheec
Q 042344 70 KNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNT---------SVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 70 k~~~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~---------s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
++..+..++|..++++.++++... +..+++++|+.|+.++..+ ...++.+||||||+|||++||||+|.
T Consensus 3 ~~~~k~~~GLr~fS~kVcekVk~k--~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K~ 80 (95)
T 1cf7_B 3 KKGDKNGKGLRHFSMKVCEKVQRK--GTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKE 80 (95)
T ss_dssp ------CCHHHHHHHHHHHHHHHH--SEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCCC
T ss_pred ccccccCccHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceecC
Confidence 566788999999999999999984 6899999999998654321 35678999999999999999999996
Q ss_pred ccCCCCCCcEEeecccc
Q 042344 141 HTADTRKPAFRWLGVNR 157 (302)
Q Consensus 141 ~~~~~sKn~iqWiG~~~ 157 (302)
|+.|+|+|.+.
T Consensus 81 ------k~~i~W~g~~~ 91 (95)
T 1cf7_B 81 ------KKEIKWIGLPT 91 (95)
T ss_dssp ------SSCEEBCCCC-
T ss_pred ------CCEEEEecCCc
Confidence 88999999875
No 3
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=92.85 E-value=0.075 Score=43.04 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=30.2
Q ss_pred HHHhhhHHHHHHHHHHHHhHHHHhhhhcchhhhh
Q 042344 171 SRKRTFGTDVTNISFKRKRMDTSINGDISQSIKM 204 (302)
Q Consensus 171 s~kr~l~~El~nL~~~E~~LD~~I~~~~~q~~~~ 204 (302)
.+.+.|+.||+.|..+|+.||++|+.|.++...+
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999875555
No 4
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=85.76 E-value=0.081 Score=45.15 Aligned_cols=52 Identities=25% Similarity=0.453 Sum_probs=37.1
Q ss_pred cccCCCccCCccccCCcCCcccccchhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHhcc
Q 042344 234 QFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGK 296 (302)
Q Consensus 234 ~~gpf~p~~~~~~~~~~~~~~~~~dwe~la~~~~pqy~nqal~~lf~hy~eawkswy~e~~~~ 296 (302)
.|||-+|-+..-.+.--+..=.-+||++||.. +|+. +||+. ||+||.|.++.
T Consensus 33 ~YGp~APyT~~lle~la~~~LtP~DW~~lara--------~Ls~--gqyll-Wkse~~d~~q~ 84 (140)
T 2kgf_A 33 QYGATAPYTLAIVESVADNWLTPTDWNTLVRA--------VLSG--GDHLL-WKSEFFENCRD 84 (140)
T ss_dssp HTCTTSHHHHHHHHHHHTSBCCHHHHHHHHHH--------HCCS--HHHHH-HHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHhCCCChHHHHHHHHH--------HcCc--chhHH-HHHHHHHHHHH
Confidence 48999997755444433334446899999865 3443 89996 99999998874
No 5
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=82.00 E-value=0.17 Score=43.18 Aligned_cols=52 Identities=23% Similarity=0.536 Sum_probs=35.9
Q ss_pred cccCCCccCCccccCCcCCcccccchhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHhcc
Q 042344 234 QFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGK 296 (302)
Q Consensus 234 ~~gpf~p~~~~~~~~~~~~~~~~~dwe~la~~~~pqy~nqal~~lf~hy~eawkswy~e~~~~ 296 (302)
.|||-+|-+..-.+.--+.-=--.||++||.. +|.. ++|+. ||+||.|.++.
T Consensus 28 ~YGp~APyT~a~le~La~~~LtP~DW~~lara--------~Ls~--gqyll-Wkse~~d~~q~ 79 (140)
T 2v4x_A 28 QYGPTAPFTIAMIENLGTQALPPNDWKQTARA--------CLSG--GDYLL-WKSEFFEQCAR 79 (140)
T ss_dssp HTCTTSHHHHHHHHHHHTSCCCHHHHHHHHHH--------HSCH--HHHHH-HHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHhCCCChHHHHHHHHH--------HcCc--chhHH-HHHHHHHHHHH
Confidence 48999998755444432222335799999865 3443 78885 99999998873
No 6
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=76.11 E-value=4.7 Score=29.98 Aligned_cols=44 Identities=11% Similarity=0.296 Sum_probs=38.9
Q ss_pred HHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhhe
Q 042344 84 QNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIE 138 (302)
Q Consensus 84 qkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIE 138 (302)
+..+..+..+ .|++++..+|+.+ +|.+--+||+.+=|+.=|||.
T Consensus 13 ~~lL~yIr~s-GGildI~~~a~ky----------gV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNN-GGFLDIEHFSKVY----------GVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHT-TSEEEHHHHHHHH----------CCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHc-CCEEeHHHHHHHh----------CCCHHHHHHHHHHHHHCCCee
Confidence 4566777776 6999999999999 899999999999999999995
No 7
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=71.43 E-value=11 Score=27.16 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 85 NFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 85 kFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+.+|... +.++..+.|+.| ++.+.-++-+.+.|+.-|+|++.
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~l----------gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEAL----------AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHH----------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 455566553 469999999999 78888999999999999999965
No 8
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=70.20 E-value=7.6 Score=28.79 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHHHHHHhhCC-CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 84 QNFVRLFVCSN-VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 84 qkFV~L~l~sp-~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
++.+.+|...+ +..++..+.|+.| ++.++.|.-+..-|+.-|+|++.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~L----------gvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKL----------GTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHH----------CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEec
Confidence 66777777754 4579999999999 67778888888899999999987
No 9
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=70.17 E-value=9.2 Score=29.59 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecccCCCCCCcEEee
Q 042344 76 EKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWL 153 (302)
Q Consensus 76 dKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn~iqWi 153 (302)
|.....+.++.+.+|.. .+ ++..+.|+.| ++.+.-++=..+-||.=|+|.+. +-+--+|.
T Consensus 12 d~~~~~~~~~IL~lL~~--~g-~sa~eLAk~L----------giSk~aVr~~L~~Le~eG~I~~~-----~~~PP~W~ 71 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGI--EG-ATAAQLTRQL----------NMEKREVNKALYDLQRSAMVYSS-----DDIPPRWF 71 (82)
T ss_dssp -CCSHHHHHHHHHHHSS--ST-EEHHHHHHHS----------SSCHHHHHHHHHHHHHHTSSEEC-----SSSSCEEE
T ss_pred ccchHHHHHHHHHHHHH--cC-CCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEeC-----CCCCCcce
Confidence 44566788899998885 34 9999999999 34444444444559999999998 45567785
No 10
>1p7n_A GAG polyprotein capsid protein P27; retrovirus, immature GAG, V protein; 2.60A {Rous sarcoma virus} SCOP: a.73.1.1
Probab=68.85 E-value=1 Score=39.69 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=37.3
Q ss_pred cccCCCccCCccccCCcCCcccccchhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHhccc
Q 042344 234 QFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKT 297 (302)
Q Consensus 234 ~~gpf~p~~~~~~~~~~~~~~~~~dwe~la~~~~pqy~nqal~~lf~hy~eawkswy~e~~~~~ 297 (302)
.|||-+|-...-++.--+..=--+||++|+.. +|. =++|+. ||+||.|.++..
T Consensus 57 ~yG~~aP~T~~~le~La~~~LtP~Dw~~lara--------vLs--~gqyll-Wksew~~~~q~~ 109 (176)
T 1p7n_A 57 TKGLRSPITMAEVEALMSSPLLPHDVTNLMRV--------ILG--PAPYAL-WMDAWGVQLQTV 109 (176)
T ss_dssp TTCSSCHHHHHHHHHHTSSCCCHHHHHHHHHH--------HHC--HHHHHH-HHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHHHHHhCCCChHHHHHHHHH--------HhC--chhhHH-HHHHHHHHHHHH
Confidence 47888887755444433333346899999864 344 489996 999999998764
No 11
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=65.73 E-value=9.1 Score=30.08 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=38.9
Q ss_pred HHHHHHHhhCCCce-ecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 84 QNFVRLFVCSNVDM-ITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 84 qkFV~L~l~sp~gv-IdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+.+..|...+ +. ++..+.|+.| +..+-.+|-+.+.|+..|+|++..
T Consensus 29 ~~il~~L~~~~-~~~~t~~eLa~~l----------~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 29 LNVMKSFLNEP-DRWIDTDALSKSL----------KLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHST-TCCEEHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCC-CCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEeeC
Confidence 44666666654 44 9999999999 678899999999999999999873
No 12
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=61.48 E-value=15 Score=26.28 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 82 LTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 82 LTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.-.+.+++|... ...+++.+.|+.| ++.+--++-+++.|+.-|+|+..
T Consensus 11 ~~~~IL~~L~~~-~~~~s~~eLA~~l----------glsr~tv~~~l~~L~~~G~I~~~ 58 (67)
T 2heo_A 11 LEQKILQVLSDD-GGPVAIFQLVKKC----------QVPKKTLNQVLYRLKKEDRVSSP 58 (67)
T ss_dssp HHHHHHHHHHHH-CSCEEHHHHHHHH----------CSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc-CCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCcEecC
Confidence 345677777663 3569999999999 78889999999999999999765
No 13
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=61.13 E-value=9.1 Score=27.70 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=33.2
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+.++..+.|+.| ++.+--+|-+.+.|+.-|+|++..
T Consensus 34 ~~~~t~~ela~~l----------~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 34 EKPITSEELADIF----------KLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp CSCEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEeec
Confidence 3569999999999 788899999999999999999973
No 14
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=60.82 E-value=13 Score=28.28 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=37.5
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+..+...+.+.++..+.|+.+ ++.+=.+.-+++-|+.-|+|++..
T Consensus 36 vL~~l~~~~~~~~t~~ela~~l----------~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 36 TLGYLYAHQQDGLTQNDIAKAL----------QRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHSTTTCEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHh----------CCCcccHHHHHHHHHHCCCEeecC
Confidence 4445555554679999999999 678889999999999999999983
No 15
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=60.62 E-value=20 Score=27.02 Aligned_cols=46 Identities=4% Similarity=0.039 Sum_probs=36.5
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+..+...+.+.++..+.|+.| ++.+--++-+++-|+.-|||++..
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l----------~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEF----------SIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHH----------CCCcchHHHHHHHHHHCCCEEeeC
Confidence 4444555543368999999998 677788999999999999999973
No 16
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=60.42 E-value=16 Score=27.64 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCC-CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 83 TQNFVRLFVCSN-VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 83 TqkFV~L~l~sp-~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
-++.+.+|...+ +..++..+.|+.| ++.++-|.-...-|+.-|+|++.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~L----------gvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKL----------GTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEec
Confidence 456777777643 4579999999999 66777777778889999999987
No 17
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=58.90 E-value=22 Score=26.80 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=35.9
Q ss_pred HHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 85 NFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 85 kFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+.++.... +.+++.+.|+.| ++.+=.++.+.+.|+.-|+|++.
T Consensus 30 ~il~~L~~~~-~~~t~~ela~~l----------~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSD-KPLTISDIMEEL----------KISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcC-CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444443232 569999999999 67888999999999999999997
No 18
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=56.56 E-value=14 Score=26.60 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=36.6
Q ss_pred HHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 85 NFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 85 kFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
..+.++... +.++..+.|+.| ++.+-.+|.+.+.|+.-|+|++..
T Consensus 24 ~il~~l~~~--~~~s~~ela~~l----------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLER--GGMRVSEIAREL----------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHH--CCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 344555442 458999999999 788899999999999999999973
No 19
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=56.09 E-value=43 Score=25.47 Aligned_cols=70 Identities=9% Similarity=0.071 Sum_probs=49.8
Q ss_pred ecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecccCCCCCCcEEeecccccccccccccCcchHHHhhhH
Q 042344 98 ITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIGLADSLNLDESRKRTFG 177 (302)
Q Consensus 98 IdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn~iqWiG~~~~~n~~~~a~~~~~s~kr~l~ 177 (302)
+...+.|..+ +...|++-.+++.|+.-|||++. ...|.= .+.|. . .....+.+.
T Consensus 21 ~~~t~La~~~----------~ls~~~~~~~l~~L~~~GLI~~~------~~~~~L-----T~kG~-~----~l~~l~~~~ 74 (95)
T 1r7j_A 21 SPKTRIMYGA----------NLSYALTGRYIKMLMDLEIIRQE------GKQYML-----TKKGE-E----LLEDIRKFN 74 (95)
T ss_dssp BCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE------TTEEEE-----CHHHH-H----HHHHHHHHH
T ss_pred CCHHHHHHHh----------CcCHHHHHHHHHHHHHCCCeEEE------CCeeEE-----ChhHH-H----HHHHHHHHH
Confidence 8899999999 78889999999999999999998 222221 11111 0 124556777
Q ss_pred HHHHHHHHHHHhHHHH
Q 042344 178 TDVTNISFKRKRMDTS 193 (302)
Q Consensus 178 ~El~nL~~~E~~LD~~ 193 (302)
.++..|...|.+|-+.
T Consensus 75 ~~l~~l~~~e~~l~~~ 90 (95)
T 1r7j_A 75 EMRKNMDQLKEKINSV 90 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888777776544
No 20
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=55.17 E-value=22 Score=27.57 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=36.6
Q ss_pred HHHHHhhC-CCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCS-NVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~s-p~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.++-.. +++.++..+.|+.+ ++.++-++.|.+.|...|||+..
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~----------~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTN----------NLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHT----------TSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHhCCCCCcCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCceEec
Confidence 33344333 35679999999999 78999999999999999999876
No 21
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=51.46 E-value=31 Score=26.52 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+..+...+.+.++..+.|+.| ++.+=.+.-+++-|+.-|||+|..
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l----------~~~~~tvs~~l~~Le~~Glv~r~~ 87 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHL----------NYKQPQVVKAVKILSQEDYFDKKR 87 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHS----------SSHHHHHHHHHHHHHHTTSSCCBC
T ss_pred HHHHHHhccCCCcCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEecC
Confidence 3344444434678888888888 677888999999999999999973
No 22
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=51.26 E-value=16 Score=26.94 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=31.7
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.++..+.|+.| ++.+--++-..+.|+..|||++.
T Consensus 42 ~~~~~~eLa~~l----------~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTL----------SLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 458999999999 67888899999999999999987
No 23
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=50.90 E-value=18 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhhCCCc-eecHHHHHHHHhcCcCCccccccchhh-hhhHHHHHhhhhhhee
Q 042344 77 KSLGLLTQNFVRLFVCSNVD-MITLDEVAKLLLGDAHNTSVMRTKVRR-LYDIANVLSSMNLIEK 139 (302)
Q Consensus 77 KSLglLTqkFV~L~l~sp~g-vIdLneAA~~L~g~~~~~s~~kvkkRR-LYDItNVLEgIgLIEK 139 (302)
..++.+.+.+.-|+.-...+ .+++.+.|+.| .+.+=- ++-+.+.|+.-|+|++
T Consensus 9 ~~~g~~~~~l~~L~~l~~~~~~~t~~eLa~~l----------~is~~t~vs~~l~~Le~~Glv~~ 63 (95)
T 2pg4_A 9 LQFGHLIRILPTLLEFEKKGYEPSLAEIVKAS----------GVSEKTFFMGLKDRLIRAGLVKE 63 (95)
T ss_dssp SBHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH----------CCCHHHHHTTHHHHHHHTTSEEE
T ss_pred HHhhhHHHHHHHHHHHHhcCCCCCHHHHHHHH----------CCCchHHHHHHHHHHHHCCCeec
Confidence 34566665554333322223 69999999999 678888 9999999999999983
No 24
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=49.69 E-value=7.2 Score=26.95 Aligned_cols=12 Identities=67% Similarity=1.007 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHH
Q 042344 272 NQALRDLFSHYM 283 (302)
Q Consensus 272 nqal~~lf~hy~ 283 (302)
.|||.||++.||
T Consensus 25 rqALQdLlseY~ 36 (40)
T 4e17_B 25 RQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 589999999998
No 25
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.28 E-value=21 Score=25.49 Aligned_cols=51 Identities=8% Similarity=0.273 Sum_probs=36.4
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+++|...+++.++..+.++.|..... .+.+=-+|-+.+.|+..|+|.+.+
T Consensus 22 IL~~l~~~~~~~~s~~el~~~l~~~~~-----~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 22 ILEVLQEPDNHHVSAEDLYKRLIDMGE-----EIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHTSGGGSSBCHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCC-----CCCHhhHHHHHHHHHHCCCeEEEe
Confidence 455555442257999999999832211 344567899999999999999984
No 26
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=47.91 E-value=16 Score=30.36 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=27.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 042344 69 SKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLL 107 (302)
Q Consensus 69 ~k~~~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L 107 (302)
.+...|...+-..|-.-.++||....-.-+++.++|+.+
T Consensus 17 ~~~~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~a 55 (211)
T 3fiw_A 17 LYFQGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRL 55 (211)
T ss_dssp -------CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred CCcccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHh
Confidence 344455666777888888999998776789999999999
No 27
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=46.83 E-value=15 Score=32.55 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=35.4
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
....|. .+.+++.+.|..+ ++..|.++-+..+|.++||+++.
T Consensus 30 lf~~l~---~g~~t~~elA~~~----------~~~~~~l~rlLr~l~~~gl~~~~ 71 (332)
T 3i53_A 30 VADHIA---AGHRTAAEIASAA----------GAHADSLDRLLRHLVAVGLFTRD 71 (332)
T ss_dssp HHHHHH---TTCCBHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred hHHHHh---cCCCCHHHHHHHH----------CcCHHHHHHHHHHHHhCCcEEec
Confidence 444453 3579999999999 78889999999999999999986
No 28
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=46.82 E-value=18 Score=32.97 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=33.4
Q ss_pred CCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 94 NVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 94 p~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+++.+++.+.|+.+ ++..|.|+-+..+|.++||+++.
T Consensus 68 ~~g~~t~~eLA~~~----------g~~~~~l~rlLr~L~~~g~l~~~ 104 (369)
T 3gwz_A 68 QEGPRTATALAEAT----------GAHEQTLRRLLRLLATVGVFDDL 104 (369)
T ss_dssp TTSCEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSSEEC
T ss_pred cCCCCCHHHHHHHH----------CcCHHHHHHHHHHHHhCCCEEEe
Confidence 35789999999999 78889999999999999999985
No 29
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=46.60 E-value=21 Score=25.66 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=31.9
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.++..+.|+.| ++.+-.+|-+.+.|+.-|+|++.
T Consensus 29 ~~~~~~ela~~l----------~is~~tvs~~l~~L~~~gli~~~ 63 (100)
T 1ub9_A 29 RKAPFSQIQKVL----------DLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp SEEEHHHHHHHT----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 469999999999 67888999999999999999976
No 30
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=46.44 E-value=13 Score=32.65 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=32.2
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|+.+ ++..|+|+-+..+|.++||+++.
T Consensus 38 ~~~t~~ela~~~----------~~~~~~l~r~L~~L~~~g~l~~~ 72 (335)
T 2r3s_A 38 GIESSQSLAQKC----------QTSERGMRMLCDYLVIIGFMTKQ 72 (335)
T ss_dssp SEECHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHh----------CCCchHHHHHHHHHHhcCCeEec
Confidence 689999999999 67889999999999999999874
No 31
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=46.34 E-value=23 Score=28.01 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=36.3
Q ss_pred HHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 88 RLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 88 ~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.++...+.+.++..+.|+.| .+.+=.+--+++-|+.-|||+|..
T Consensus 42 ~~L~~~~~~~~t~~eLa~~l----------~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 42 VLLTFSKSGELPMSKIGERL----------MVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHTSGGGEEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHCCCCCcCHHHHHHHH----------CCCHHHHHHHHHHHHhCCCEEEee
Confidence 34444566789999999999 677788888999999999999984
No 32
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=45.93 E-value=21 Score=31.51 Aligned_cols=35 Identities=9% Similarity=0.240 Sum_probs=32.1
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|+.+ ++..++|+-+..+|.++||+++.
T Consensus 40 ~~~t~~ela~~~----------~~~~~~l~r~Lr~L~~~g~l~~~ 74 (334)
T 2ip2_A 40 GIDSDETLAAAV----------GSDAERIHRLMRLLVAFEIFQGD 74 (334)
T ss_dssp TCCSHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHh----------CcCHHHHHHHHHHHHhCCceEec
Confidence 569999999999 67889999999999999999986
No 33
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=45.79 E-value=51 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.2
Q ss_pred eecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 97 MITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 97 vIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.++..+.|+.| .+.+-.+.-+++-|+.-|||+|..
T Consensus 68 ~~t~~eLa~~l----------~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 68 DQSQIQLAKAI----------GIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp SEEHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCHHHHHHHH----------CCCHhhHHHHHHHHHHCCCEEeeC
Confidence 36666666666 677888999999999999999983
No 34
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=44.87 E-value=14 Score=29.53 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 042344 74 RREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLL 107 (302)
Q Consensus 74 RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L 107 (302)
|....-..|-.-.++||....-.-+++.++|+..
T Consensus 25 r~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~a 58 (215)
T 2qko_A 25 QNPERRAALVNAAIEVLAREGARGLTFRAVDVEA 58 (215)
T ss_dssp --CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHhChhhccHHHHHHHc
Confidence 3455556678889999999877889999999998
No 35
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=44.62 E-value=16 Score=32.89 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=32.6
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+++.+.|+.+ ++..++|+-+..+|.++||+++.
T Consensus 62 ~~~~t~~eLA~~~----------g~~~~~l~rlLr~L~~~gll~~~ 97 (359)
T 1x19_A 62 EGPKDLATLAADT----------GSVPPRLEMLLETLRQMRVINLE 97 (359)
T ss_dssp TCCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHh----------CcChHHHHHHHHHHHhCCCeEee
Confidence 3679999999999 67889999999999999999986
No 36
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=44.12 E-value=31 Score=25.84 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 85 NFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 85 kFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
..++++.. .+.+++.+.|+.|. .-..-.||. .+.|+..|+|+|+
T Consensus 6 ~Il~~L~~--~g~vsv~eLa~~l~-------VS~~TIRrd---L~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLAL--RGRMEAAQISQTLN-------TPQPMINAM---LQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHH--SCSBCHHHHHHHTT-------CCHHHHHHH---HHHHHHHTSEEEE
T ss_pred HHHHHHHH--cCCCcHHHHHHHHC-------cCHHHHHHH---HHHHHHCCCEEEe
Confidence 44566665 47899999999992 112334554 6799999999998
No 37
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=44.03 E-value=42 Score=24.01 Aligned_cols=36 Identities=8% Similarity=0.060 Sum_probs=32.3
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.++..+.|+.| ++.+--++-..+.|+..|+|++.
T Consensus 36 ~~~~s~~ela~~l----------~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 36 SPGTSAGELTRIT----------GLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp CCSEEHHHHHHHH----------CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 4579999999999 67788899999999999999987
No 38
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=44.00 E-value=24 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=31.9
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|+.| ++.+.-++-..+.|+..|||++.
T Consensus 37 ~~~s~~eLa~~l----------gis~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 37 GERAVEAIATAT----------GMNLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp CCEEHHHHHHHH----------TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 568999999999 68889999999999999999887
No 39
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=43.68 E-value=46 Score=24.90 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=33.9
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecccCCCCCCcEEee
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWL 153 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn~iqWi 153 (302)
++.+++.|.|+.| ++..--+..-.+.||.-|+|.+.+. ++.-..+|.
T Consensus 22 g~~psv~EIa~~l----------gvS~~TVrr~L~~Le~kG~I~R~~g--gr~~~~~~~ 68 (77)
T 2jt1_A 22 GAPVKTRDIADAA----------GLSIYQVRLYLEQLHDVGVLEKVNA--GKGVPGLWR 68 (77)
T ss_dssp TSCEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEESC--SSSSCCEEE
T ss_pred CCCcCHHHHHHHH----------CCCHHHHHHHHHHHHHCCcEEecCC--CCCcHHHHH
Confidence 4679999999999 3444445556889999999999852 234455554
No 40
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=43.67 E-value=33 Score=27.10 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 82 LTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 82 LTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+-++.+.+|... +.++..+.|+.| ++.+..+....+-|+.-|+|++.
T Consensus 6 ~d~~il~~L~~~--~~~s~~ela~~l----------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD--SRLSMRELGRKI----------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC--SCCCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 445777877764 579999999999 67888899999999999999986
No 41
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=43.44 E-value=17 Score=32.73 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=32.8
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+++.+.|+.+ ++..|.|+-+..+|.++||+++.
T Consensus 53 ~g~~t~~elA~~~----------g~~~~~l~rlLr~l~~~g~l~~~ 88 (348)
T 3lst_A 53 DGPRTPAELAAAT----------GTDADALRRVLRLLAVRDVVRES 88 (348)
T ss_dssp TSCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHh----------CcCHHHHHHHHHHHHhCCCEEec
Confidence 4689999999999 78889999999999999999884
No 42
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=41.53 E-value=42 Score=25.72 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=32.4
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+++.++|+.| ++.+--+.-+.+.|+.-|||++.
T Consensus 29 ~~~~s~~ela~~l----------~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 29 GEGAKINRIAKDL----------KIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp TSCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHHh----------CCChHHHHHHHHHHHHCCCEEec
Confidence 4679999999999 67778889999999999999987
No 43
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=41.47 E-value=34 Score=26.43 Aligned_cols=44 Identities=5% Similarity=0.115 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 85 NFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 85 kFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
..++++.. .+.+++.+.|+.|. .-..-.||. .+.|+..|+|.|+
T Consensus 6 ~Il~~L~~--~g~vsv~eLA~~l~-------VS~~TIRrD---L~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLAL--QGRMEAKQLSARLQ-------TPQPLIDAM---LERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHH--SCSEEHHHHHHHTT-------CCHHHHHHH---HHHHHTTCCSEEE
T ss_pred HHHHHHHH--cCCCcHHHHHHHHC-------cCHHHHHHH---HHHHHHCCCEEEE
Confidence 44566665 47899999999992 112334554 6799999999998
No 44
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=41.43 E-value=25 Score=25.72 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=32.2
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.++..+.|+.| ++.+..++-..+.|+..|||++.
T Consensus 35 ~~~~~~ela~~l----------~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 35 QELSVGELCAKL----------QLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp SCEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 679999999999 67888999999999999999987
No 45
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=41.24 E-value=29 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=32.6
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+.++..+.|+.| ++.+-.++-+++-|+.-|+|++..
T Consensus 48 ~~~~~~~~la~~l----------~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 48 GGDVTPSELAAAE----------RMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp TSCBCHHHHHHHT----------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCCHHHHHHHh----------CCChhhHHHHHHHHHHCCCEeeCC
Confidence 3568999999998 678889999999999999999983
No 46
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=40.59 E-value=35 Score=25.73 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHH----HHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 75 REKSLGLLTQNF----VRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 75 kdKSLglLTqkF----V~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
....|..+..++ +.++ . .+.++..+.++.|. ++....|+-+.+.|+.-|||++..
T Consensus 15 ~~~~l~~l~~~~~~~IL~~L-~--~~~~~~~eL~~~l~---------gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 15 VRKSMQIFAGKWTLLIIFQI-N--RRIIRYGELKRAIP---------GISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp HHHHHHHHTSSSHHHHHHHH-T--TSCEEHHHHHHHST---------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCccHHHHHHHH-H--hCCcCHHHHHHHcc---------cCCHHHHHHHHHHHHHCCCEEEee
Confidence 345556665432 2222 2 46799999999981 277899999999999999999973
No 47
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=40.50 E-value=38 Score=26.18 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=29.8
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.++..+.|+.| ++.+-.++-+++-|+.-|+|++.
T Consensus 56 ~~~t~~ela~~l----------~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 56 DAMMITRLAKLS----------LMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp SCBCHHHHHHHT----------TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEec
Confidence 457777777777 67888999999999999999997
No 48
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=39.95 E-value=49 Score=23.50 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=35.9
Q ss_pred HHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 84 QNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 84 qkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
..++..|.. .+.++..+.++.|..+ .....=-+|-+.+.|+.-|+|++.
T Consensus 12 ~~vL~~L~~--~~~~t~~ei~~~l~~~------~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 12 LEVMKVIWK--HSSINTNEVIKELSKT------STWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHT--SSSEEHHHHHHHHHHH------SCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHhhc------CCccHHHHHHHHHHHHHCCCeEEE
Confidence 345555554 4579999999999310 013456799999999999999998
No 49
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=39.90 E-value=49 Score=27.11 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=36.5
Q ss_pred HHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 87 VRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 87 V~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+..+...+.+.++..+.|+.| .+.+=.+.-+++-|+.-|||++..
T Consensus 47 L~~L~~~~~~~~t~~eLa~~l----------~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 47 ILSILHLPEEETTLNNIARKM----------GTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHHHHSCGGGCCHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhccCCCcCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEecc
Confidence 344444456789999999999 677788889999999999999984
No 50
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=38.70 E-value=66 Score=24.66 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=33.8
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhhee
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEK 139 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK 139 (302)
.+..+... +.++..+.|+.| ++.+-.+.-+++-|+.-|||++
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l----------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRL----------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEe
Confidence 33444443 458999999999 6778889999999999999999
No 51
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=38.69 E-value=19 Score=27.77 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=28.0
Q ss_pred HHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 89 LFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 89 L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+...+.+.++..+.|+.| .+.+=.+.-+++-|+.-|||+|.
T Consensus 49 ~l~~~~~~~~t~~eLa~~l----------~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 49 YIYENQESGIIQKDLAQFF----------GRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHTTTCCCHHHHHHC----------------CHHHHHHHHHHTTSBCCC
T ss_pred HHHhCCCCCCCHHHHHHHH----------CCChhHHHHHHHHHHHCCCEEee
Confidence 3333333567888888777 66777888999999999999998
No 52
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.21 E-value=54 Score=24.66 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=32.3
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+.++..+.|+.| ++.+-.++.+++-|+.-|||++..
T Consensus 50 ~~~~t~~~la~~l----------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 50 RDSPTQRELAQSV----------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp SSCCBHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCCHHHHHHHh----------CCChhhHHHHHHHHHHCCCeeecC
Confidence 4568899999888 678889999999999999999973
No 53
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=37.66 E-value=67 Score=24.22 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=32.0
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+.++..+.|+.| ++.+-.++-+++-|+.-|+|++..
T Consensus 48 ~~~~~~~ela~~l----------~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 48 DGPKTMAYLANRY----------FVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp TSCBCHHHHHHHT----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHh----------CCCchhHHHHHHHHHHCCCEEeec
Confidence 4568888888888 677888999999999999999973
No 54
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=37.24 E-value=22 Score=26.72 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=31.3
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|+.| +..+--++-..+.|+..|||++.
T Consensus 38 ~~~~~~ela~~l----------~is~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 38 SEASVGHISHQL----------NLSQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp CCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 458999999999 67788899999999999999987
No 55
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=37.12 E-value=35 Score=26.13 Aligned_cols=37 Identities=8% Similarity=0.158 Sum_probs=33.0
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+.++..+.|+.| .+.+-.+.-+++-|+.-|||+|..
T Consensus 48 ~~~~t~~eLa~~l----------~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 48 DEKLNIKKLGERV----------FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp TCEEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCcCHHHHHHHH----------CCChhhHHHHHHHHHHCCCeEecC
Confidence 4689999999999 678889999999999999999984
No 56
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=37.08 E-value=45 Score=25.75 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=37.0
Q ss_pred HHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 84 QNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 84 qkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+.+|... +.++..+.|+.| ++.+.-+....+-|+.-|+|++.
T Consensus 7 ~~il~~L~~~--~~~~~~ela~~l----------g~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEKD--ARTPFTEIAKKL----------GISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHC--TTCCHHHHHHHH----------TSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEecc
Confidence 4566666653 568999999999 67788888999999999999876
No 57
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=37.01 E-value=44 Score=26.46 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
|..+-++.+.+|... +.++..+.|+.| +.....+....+-|+.-|+|.+.
T Consensus 6 ld~~d~~il~~L~~~--~~~s~~ela~~l----------g~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 6 IDNLDRGILEALMGN--ARTAYAELAKQF----------GVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp CCHHHHHHHHHHHHC--TTSCHHHHHHHH----------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHcCCcceE
Confidence 334456778888774 579999999999 67778888889999999999985
No 58
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=36.85 E-value=42 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=34.5
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+|.. +.++..+.|+.| ++.+--++-..+.|+..|||++.
T Consensus 26 IL~~L~~---~~~~~~ela~~l----------~is~~tv~~~l~~L~~~gli~~~ 67 (114)
T 2oqg_A 26 ILTELGR---ADQSASSLATRL----------PVSRQAIAKHLNALQACGLVESV 67 (114)
T ss_dssp HHHHHHH---SCBCHHHHHHHS----------SSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHc---CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeeEE
Confidence 4445522 458999999999 68888999999999999999986
No 59
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=36.73 E-value=43 Score=26.89 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
|-.+-++.+.+|... +.++..+.|+.| ++....+....+-|+.-|+|++.
T Consensus 8 ld~~~~~il~~L~~~--~~~s~~ela~~l----------g~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQEN--GRLTNVELSERV----------ALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEeee
Confidence 445556788888774 569999999999 67778888889999999999986
No 60
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=36.66 E-value=23 Score=26.86 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=31.2
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.++|+.| ++.+--++-..+.|+..|+|.+.
T Consensus 44 ~~~s~~ela~~l----------~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAI----------GMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHH----------SSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 458999999999 67788899999999999999876
No 61
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=36.66 E-value=34 Score=29.97 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHH-HHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIAN-VLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItN-VLEgIgLIEK~ 140 (302)
|..+-++++..+.......++..++|+.| +..++.||+..- .|...|||.+.
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~l----------g~~~~tl~~~l~~~l~~~gli~~~ 313 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAAL----------SEDENTIEDVIEPYLLANGYIERT 313 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHT----------TCCHHHHHHTTHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHh----------CCCHHHHHHHHhHHHHHcCceecC
Confidence 44555677777776655678899999998 678899998888 88899999877
No 62
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=36.63 E-value=46 Score=25.39 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+..+... +.++..++|+.| .+.+=.+.-+++-|+.-|||++.
T Consensus 45 iL~~l~~~--~~~t~~ela~~l----------~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 45 IISVLSSA--SDCSVQKISDIL----------GLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHS--SSBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHcC--CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEee
Confidence 44444443 478999999998 67788899999999999999998
No 63
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=36.58 E-value=40 Score=25.75 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=31.1
Q ss_pred eecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 97 MITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 97 vIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.++..+.|+.| ++.+-.++-+++-|+.-|||++..
T Consensus 45 ~~t~~eLa~~l----------~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 45 SRTQKHIGEKW----------SLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp SBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEeecc
Confidence 48999999988 677889999999999999999973
No 64
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=36.35 E-value=33 Score=25.04 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=30.5
Q ss_pred CceecHHHH----HHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 95 VDMITLDEV----AKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 95 ~gvIdLneA----A~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.++..+. |+.| .+.+--++-+.+-|+.-|||+|.
T Consensus 20 ~~~~~~~el~~~la~~l----------~is~~tvs~~l~~Le~~gli~r~ 59 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEF----------PMSTATFYDAKKFLIQEGFVKER 59 (99)
T ss_dssp CTTCBHHHHHHHHHTTS----------CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHCCCEEEE
Confidence 356888888 6655 67888999999999999999997
No 65
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=35.88 E-value=46 Score=26.38 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
|..+-++.+.+|... +.++..+.|+.| ++....+....+-|+.-|+|.+.
T Consensus 5 ld~~~~~il~~L~~~--~~~s~~ela~~l----------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 5 LDEIDKKIIKILQND--GKAPLREISKIT----------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHH----------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 344556778888774 579999999999 67778888889999999999875
No 66
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=35.75 E-value=31 Score=30.82 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=31.9
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|+.+ ++..+.|+-+..+|.++||+++.
T Consensus 48 ~~~t~~eLA~~~----------g~~~~~l~r~Lr~L~~~Gll~~~ 82 (374)
T 1qzz_A 48 GADTLAGLADRT----------DTHPQALSRLVRHLTVVGVLEGG 82 (374)
T ss_dssp TCCSHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHh----------CcCHHHHHHHHHHHhhCCCEEEe
Confidence 569999999999 67889999999999999999884
No 67
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=35.50 E-value=47 Score=26.11 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 84 QNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 84 qkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+.+|.. ++.++..+.|+.| ++.+-.+....+.|+.-|+|++.
T Consensus 6 ~~il~~L~~--~~~~~~~ela~~l----------g~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQY--NAKYSLDEIAREI----------RIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHTT--CTTSCHHHHHHHH----------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCcEEEE
Confidence 456666665 4579999999999 67778888899999999999985
No 68
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=35.41 E-value=42 Score=26.49 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
|..+-++.+.+|... +.++..+.|+.| ++.+..+....+-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~~--~~~s~~ela~~l----------g~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSEN--SRLTYRELADIL----------NTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHT----------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 444556788888764 679999999999 67788888899999999999876
No 69
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=35.09 E-value=40 Score=25.68 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=32.0
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| .+.+-.+.-+++-|+.-|||+|..
T Consensus 50 ~~~t~~eLa~~l----------~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 50 EPISQKEIALWT----------KKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp SSEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHH----------CCCHhhHHHHHHHHHHCCCeeccC
Confidence 568999999998 678889999999999999999973
No 70
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=34.96 E-value=58 Score=28.93 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=39.3
Q ss_pred CCHHHHHH--HHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 77 KSLGLLTQ--NFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 77 KSLglLTq--kFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.....|.+ ..+++|...+ +.+++.+.|+.| +..+=.+|-|.+.|+..|+|++.
T Consensus 24 ~~v~sl~Ral~IL~~l~~~~-~~ltl~eia~~l----------gl~ksTv~RlL~tL~~~G~v~~~ 78 (275)
T 3mq0_A 24 DTVPALRRAVRILDLVAGSP-RDLTAAELTRFL----------DLPKSSAHGLLAVMTELDLLARS 78 (275)
T ss_dssp GGHHHHHHHHHHHHHHHHCS-SCEEHHHHHHHH----------TCC--CHHHHHHHHHHTTSEEEC
T ss_pred CcchHHHHHHHHHHHHhhCC-CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEC
Confidence 34444443 3556666654 579999999999 66777899999999999999987
No 71
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=34.18 E-value=17 Score=26.98 Aligned_cols=12 Identities=67% Similarity=1.007 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHH
Q 042344 272 NQALRDLFSHYM 283 (302)
Q Consensus 272 nqal~~lf~hy~ 283 (302)
+|||.||++.||
T Consensus 44 rqALQdLlsEY~ 55 (59)
T 4e18_B 44 RQALQDLLSEYM 55 (59)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 589999999998
No 72
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=33.99 E-value=53 Score=25.30 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=31.5
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|+.| ++.+--+.-+.+.|+.-|||++.
T Consensus 21 ~~~~~~ela~~l----------~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 21 GYARVSDIAEAL----------AVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp SSCCHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHh----------CCCHHHHHHHHHHHHHCCCEEEe
Confidence 469999999999 67788888899999999999987
No 73
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=33.61 E-value=55 Score=25.81 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
|...-.+.+.+|... +.++..+.|+.| +..+..+....+-|+.-|+|++.
T Consensus 5 ld~~~~~iL~~L~~~--~~~s~~ela~~l----------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 5 LDDIDRILVRELAAD--GRATLSELATRA----------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 334445677777653 579999999999 67788889999999999999876
No 74
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=33.60 E-value=45 Score=25.16 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=31.5
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.++..++|+.| ++.+-.++-+.+-|+.-|+|++.
T Consensus 46 ~~~~~~~la~~l----------~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 46 GPKRPGELSVLL----------GVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp CCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHH----------CCCchhHHHHHHHHHHCCCeeec
Confidence 468999999998 67888999999999999999997
No 75
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=33.21 E-value=70 Score=27.96 Aligned_cols=36 Identities=6% Similarity=0.100 Sum_probs=32.7
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+++.+.|+.| +..+--+|-+.+.|+..|+|++.
T Consensus 36 ~~~~~~~eia~~~----------gl~kstv~r~l~tL~~~G~v~~~ 71 (260)
T 2o0y_A 36 HPTRSLKELVEGT----------KLPKTTVVRLVATMCARSVLTSR 71 (260)
T ss_dssp BSSBCHHHHHHHH----------CCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEC
Confidence 3579999999999 67888999999999999999987
No 76
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=32.97 E-value=32 Score=31.19 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=32.2
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|..+ ++..|.++-+..+|.++||+++.
T Consensus 49 ~~~t~~eLA~~~----------g~~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 49 EGYTLQEISGRT----------GLTRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp TCBCHHHHHHHH----------TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHh----------CcCHHHHHHHHHHHhhCCCeEec
Confidence 679999999999 78889999999999999999875
No 77
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.96 E-value=41 Score=25.18 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=28.6
Q ss_pred eecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 97 MITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 97 vIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.++..+.|+.| ++.+-.++-+.+-|+.-|+|++.
T Consensus 52 ~~t~~ela~~l----------~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 52 PCPQNQLGRLT----------AMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SBCHHHHHHHT----------TCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEee
Confidence 46677777766 67788999999999999999987
No 78
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=32.41 E-value=41 Score=25.15 Aligned_cols=44 Identities=2% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+..+... +.++..+.|+.| ++.+-.++-+++-|+.-|+|++..
T Consensus 38 iL~~l~~~--~~~~~~ela~~l----------~~~~~tvs~~l~~L~~~gli~r~~ 81 (139)
T 3bja_A 38 VIQVLAKS--GKVSMSKLIENM----------GCVPSNMTTMIQRMKRDGYVMTEK 81 (139)
T ss_dssp HHHHHHHS--CSEEHHHHHHHC----------SSCCTTHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHc--CCcCHHHHHHHH----------CCChhHHHHHHHHHHHCCCeeecc
Confidence 34444443 468999999988 567778899999999999999973
No 79
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=32.32 E-value=63 Score=26.85 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhh-heec
Q 042344 85 NFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNL-IEKT 140 (302)
Q Consensus 85 kFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgL-IEK~ 140 (302)
+.+.+|... .+.++..+.|+.| ++.+|-||.=.+.|+..|+ |.+.
T Consensus 25 ~Il~~L~~~-~~~~s~~eLa~~l----------~vS~~Ti~rdi~~L~~~G~~I~~~ 70 (187)
T 1j5y_A 25 SIVRILERS-KEPVSGAQLAEEL----------SVSRQVIVQDIAYLRSLGYNIVAT 70 (187)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHH----------TSCHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHc-CCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 355666654 2469999999999 7888999988999999999 8764
No 80
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=32.18 E-value=32 Score=25.89 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=31.8
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+--++-+.+-|+.-|+|++..
T Consensus 44 ~~~~~~ela~~l----------~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERL----------QIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEecC
Confidence 458999999998 678888999999999999999984
No 81
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=32.07 E-value=77 Score=23.94 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=33.8
Q ss_pred HHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 85 NFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 85 kFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
..+..+.. .+ ++..+.|+.| ++.+=-+.-+.+.|+.-|||++..
T Consensus 42 ~iL~~l~~--~~-~t~~eLa~~l----------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSE--ES-LTNSELARRL----------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTT--CC-CCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHh--CC-CCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 34444443 34 9999999999 677788888999999999999973
No 82
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=32.04 E-value=35 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=27.5
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| .+.+=-+.-+++-|+.-|||+|..
T Consensus 61 ~~~t~~eLa~~l----------~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 61 EGMATLQIADRL----------ISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp SCEEHHHHHHHC-------------CTHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHH----------CCChhhHHHHHHHHHHCCCEeecC
Confidence 467777777777 667778889999999999999983
No 83
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=31.85 E-value=36 Score=26.45 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=28.2
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.++..+.|+.| .+.+-.++-+++-|+.-|||++.
T Consensus 62 ~~~t~~ela~~l----------~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 62 PGSSASEVSDRT----------AMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp TTCCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEeee
Confidence 456667777766 67788899999999999999987
No 84
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=31.85 E-value=58 Score=26.88 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
|-.+-++.+.+|... +.++..+.|+.| ++.+--+....+-|+.-|+|++.
T Consensus 15 ld~~d~~IL~~L~~~--~~~s~~eLA~~l----------glS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKKD--ARLTISELSEQL----------KKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEee
Confidence 445566788888774 579999999999 67777888889999999999876
No 85
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=31.84 E-value=46 Score=25.58 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=29.0
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| .+.+=-+.-+++-|+.-|||+|..
T Consensus 53 ~~~t~~eLa~~l----------~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 53 EGVNQRGVAATM----------GLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp TCCCSHHHHHHH----------TCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CCcCHHHHHHHH----------CCCHhHHHHHHHHHHHCCCEEeeC
Confidence 347788888887 677788999999999999999973
No 86
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=31.72 E-value=59 Score=24.55 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=31.9
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..++|+.| ++.+-.++-+++-|+.-|+|++..
T Consensus 42 ~~~t~~~la~~l----------~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 42 PGIIQEKIAELI----------KVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp TTEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCcCHHHHHHHH----------CCCHhHHHHHHHHHHHCCCEEeec
Confidence 468999999999 678889999999999999999973
No 87
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.59 E-value=52 Score=25.22 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=32.0
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+-.++-+++-|+.-|||++..
T Consensus 50 ~~~t~~ela~~l----------~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 50 GSLKVSEIAERM----------EVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp SEEEHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEeecC
Confidence 468999999998 678889999999999999999974
No 88
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=31.55 E-value=36 Score=25.83 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=31.1
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+-.++-+.+-|+.-|+|++..
T Consensus 50 ~~~~~~ela~~l----------~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 50 SPVNVKKVVTEL----------ALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SEEEHHHHHHHT----------TCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHH----------CCChhhHHHHHHHHHHCCCEEeec
Confidence 468899999988 567778899999999999999974
No 89
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=31.31 E-value=35 Score=25.70 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=31.1
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+-.++-+++-|+.-|+|++..
T Consensus 47 ~~~~~~~la~~l----------~~~~~tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 47 ACITPVELKKVL----------SVDLGALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp SSBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHH----------CCChHHHHHHHHHHHHCCCEEecC
Confidence 357888888888 678889999999999999999973
No 90
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=31.04 E-value=63 Score=24.63 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=31.5
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+-.+.-+++-|+.-|+|++..
T Consensus 53 ~~~t~~ela~~l----------~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 53 PGATAPQLGAAL----------QMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp TTEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCeeecC
Confidence 358899999998 677888999999999999999974
No 91
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=30.95 E-value=77 Score=25.47 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=33.8
Q ss_pred CCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 94 NVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 94 p~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+++.++..+.|+.+ ++..+-|..|...|...|||+-.
T Consensus 27 ~~~~~~~~~iA~~~----------~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 27 PSSLCTSDYMAESV----------NTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp CGGGCCHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCcEEEc
Confidence 45789999999999 79999999999999999999876
No 92
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=30.93 E-value=56 Score=24.84 Aligned_cols=42 Identities=7% Similarity=0.051 Sum_probs=33.7
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+..+...+ . +..+.|+.| ++.+=.+.-+++-|+.-|+|+|.
T Consensus 42 iL~~l~~~~--~-~~~~la~~l----------~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 42 ILKATSEEP--R-SMVYLANRY----------FVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp HHHHHHHSC--E-EHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCC--C-CHHHHHHHH----------CCChhHHHHHHHHHHHCCCEEec
Confidence 344444443 3 999999998 67788899999999999999998
No 93
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=30.92 E-value=28 Score=26.15 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=31.3
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.++..+.|+.| ++.+--++-+.+-|+.-|+|++.
T Consensus 42 ~~~~~~ela~~l----------~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 42 PGIKQDELATFF----------HVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp TTCBHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEee
Confidence 568999999998 67788999999999999999997
No 94
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=30.87 E-value=44 Score=25.90 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=35.1
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+|.. .+.+++.+.|+.| +..+-.++-..+.|+..|||++.
T Consensus 47 IL~~L~~--~~~~s~~eLa~~l----------~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 47 ITYALCQ--DEELCVCDIANIL----------GVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHHH--SSCEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHH--CCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 4444443 3568999999999 67888999999999999999886
No 95
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=30.75 E-value=76 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=31.1
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.++..+.|+.| ++.+-.++-....|+..|||++.
T Consensus 35 ~~~~~~ela~~l----------~is~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 35 GEFSVGELEQQI----------GIGQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp CCBCHHHHHHHH----------TCCTTHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 458999999999 67778899999999999999987
No 96
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=30.49 E-value=87 Score=28.83 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=46.2
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhh-heecccCCCCCCcEEeecc
Q 042344 83 TQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNL-IEKTHTADTRKPAFRWLGV 155 (302)
Q Consensus 83 TqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgL-IEK~~~~~~sKn~iqWiG~ 155 (302)
.++.+++|..+++..++-.+.|+.| ++.++-|+.-++.|+..|+ |+.. .+.-|+....
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~l----------gvSr~aV~k~i~~L~~~G~~i~~~-----~~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESL----------NISRTAVKKVIDQLKLEGCKIDSV-----NHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHH----------TSCHHHHHHHHHHHHHTTCEEEEE-----TTTEEEEEEC
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHH----------CCCHHHHHHHHHHHHhcCCeEEEe-----CCCeEEEecC
Confidence 3567888876555689999999999 7899999999999999998 6655 3446777654
No 97
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.41 E-value=42 Score=26.09 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=30.7
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+-.++-+++-|+.-|||++..
T Consensus 65 ~~~t~~ela~~l----------~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 65 DGLPIGTLGIFA----------VVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp CSEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHH----------CCChhHHHHHHHHHHHCCCEEecC
Confidence 457888888888 677888999999999999999973
No 98
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=30.36 E-value=61 Score=24.23 Aligned_cols=49 Identities=4% Similarity=0.076 Sum_probs=35.6
Q ss_pred HHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 84 QNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 84 qkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
...+..+.. .+.++..+.|+.|..+ ..+.+=.+|-+.+.|+.-|+|++.
T Consensus 13 ~~vL~~l~~--~~~~t~~ela~~l~~~------~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 13 WEVMNIIWM--KKYASANNIIEEIQMQ------KDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHH--HSSEEHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHh--CCCcCHHHHHHHHhcc------CCCcHhhHHHHHHHHHHCCCeEEE
Confidence 334444444 3569999999998210 014577899999999999999998
No 99
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=30.33 E-value=46 Score=29.55 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
|.....+.+.+|... +.+++.+.|+.| +..+-.++-+.+.|+..|+|++.
T Consensus 150 L~~~~~~IL~~L~~~--~~~s~~eLA~~l----------glsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYET--KGTGITELAKML----------DKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHH--TCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 444455666666553 459999999999 78889999999999999999987
No 100
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.92 E-value=78 Score=25.02 Aligned_cols=61 Identities=10% Similarity=0.263 Sum_probs=42.1
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecccCCCCCCcEEe
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRW 152 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn~iqW 152 (302)
.+++|...+++.++.++..+.|....+ .+..=-+|-..+.|+..|||.|.... .++..|..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~-----~is~aTVYR~L~~L~e~Glv~~~~~~-~~~~~Y~~ 83 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGE-----DVGLATVYRVLTQFEAAGLVVRHNFD-GGHAVFEL 83 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHTSEEEECSS-SSSCEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCC-----CCCHHHHHHHHHHHHHCCcEEEEEeC-CCceEEEe
Confidence 566666654368999999999843211 34455799999999999999998543 23455654
No 101
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=29.85 E-value=63 Score=26.71 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
|-.+-++.+.+|... +.++..+.|+.| ++....+....+-|+.-|+|++.
T Consensus 25 ld~~d~~IL~~L~~~--~~~s~~eLA~~l----------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 25 LDEIDKKIIKILQND--GKAPLREISKIT----------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHH----------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEee
Confidence 556667888888874 579999999999 56777777888999999999875
No 102
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.55 E-value=1.7e+02 Score=21.96 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHhh-CCCcee----------cHHHHHHHHhcCcCCccccccchhhhhhH
Q 042344 75 REKSLGLLTQNFVRLFVC-SNVDMI----------TLDEVAKLLLGDAHNTSVMRTKVRRLYDI 127 (302)
Q Consensus 75 kdKSLglLTqkFV~L~l~-sp~gvI----------dLneAA~~L~g~~~~~s~~kvkkRRLYDI 127 (302)
.+.+...+-+.|..|.+. -|+..- .|++|-++|. .-.+|+.||-
T Consensus 27 ~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~---------d~~~R~~YD~ 81 (99)
T 2yua_A 27 STATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLG---------SATLRRKYDR 81 (99)
T ss_dssp TTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTT---------SHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHC---------CHHHHHHHHH
Confidence 457888899999888876 344332 3677777773 4567999994
No 103
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=29.31 E-value=44 Score=25.87 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=30.6
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| .+.+=-+.-+++-|+.-|||+|..
T Consensus 54 ~~~~~~eLa~~l----------~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 54 NPQTLNSIGRHL----------DLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp SSEEHHHHHHHH----------TCCHHHHHHHHHHHHHHTSEEC--
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEeeCC
Confidence 568999999998 677888999999999999999983
No 104
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.20 E-value=38 Score=26.33 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=31.5
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..++|+.| .+.+--++-+++.|+.-|||++..
T Consensus 57 ~~~t~~ela~~l----------~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 57 GPKKMKEIAEFL----------STTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp CCBCHHHHHHHT----------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEeeC
Confidence 358999999998 677889999999999999999973
No 105
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=28.78 E-value=52 Score=26.15 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHH--H-HhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 74 RREKSLGLLTQNFVR--L-FVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 74 RkdKSLglLTqkFV~--L-~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.-...|.+|..+.-- | .+. .+.++..+.++.|. ++...-|....+.|+.-|||+|..
T Consensus 24 ~~~~~l~~l~~~w~l~IL~~L~--~g~~~~~eLa~~l~---------gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLILVALR--DGTHRFSDLRRXMG---------GVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp THHHHHHHHHSHHHHHHHHHGG--GCCEEHHHHHHHST---------TCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHcCCcHHHHHHHHH--cCCCCHHHHHHHhc---------cCCHHHHHHHHHHHHHCCcEEEEe
Confidence 345567777755421 1 222 46799999999982 277899999999999999999973
No 106
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=28.54 E-value=1.1e+02 Score=23.39 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 83 TQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 83 TqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
-+.||..++.. .++.|++.|..+ +.+.--+-|=++-|+..|.|.=+
T Consensus 9 l~~Fi~yIk~~--Kvv~LedLA~~F----------~l~t~~~i~RI~~Le~~g~ltGV 54 (72)
T 1wi9_A 9 LTEFINYIKKS--KVVLLEDLAFQM----------GLRTQDAINRIQDLLTEGTLTGV 54 (72)
T ss_dssp HHHHHHHHHHC--SEECHHHHHHHH----------CSCHHHHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHHHc--CeeeHHHHHHHh----------CCChHHHHHHHHHHHHCCCeEEE
Confidence 38999999996 599999999999 34333344556667888777544
No 107
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=28.45 E-value=53 Score=26.07 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.2
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+=-++-+++-|+.-|||+|..
T Consensus 58 ~~~t~~eLa~~l----------~is~~tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 58 GPINLATLATLL----------GVQPSATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp CSEEHHHHHHHH----------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHh----------CCCHHHHHHHHHHHHHCCCEEecc
Confidence 357777777777 678888999999999999999973
No 108
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=27.99 E-value=72 Score=27.54 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+++|... .+.+++.+.|+.+ +..+=-+|-+.+.|+..|+|++.
T Consensus 11 iL~~l~~~-~~~~s~~ela~~~----------gl~~stv~r~l~~L~~~G~v~~~ 54 (241)
T 2xrn_A 11 IMRALGSH-PHGLSLAAIAQLV----------GLPRSTVQRIINALEEEFLVEAL 54 (241)
T ss_dssp HHHHHHTC-TTCEEHHHHHHHT----------TSCHHHHHHHHHHHHTTTSEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 44555544 3469999999999 67888999999999999999986
No 109
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=27.93 E-value=9.6 Score=35.52 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=27.7
Q ss_pred eecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 97 MITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 97 vIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
..+..+.|+.+ ++.+.++|++.+.|+..|||++.
T Consensus 32 ~~t~~eia~~~----------gv~~~~Vy~~L~~L~~~GlV~~~ 65 (342)
T 3qph_A 32 PSTAKEISTKS----------GIPYNRVYDTISSLKLRGFVTEI 65 (342)
T ss_dssp HHHHSCCSSST----------TSSSCSCCHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 35555555555 78889999999999999999987
No 110
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=27.93 E-value=51 Score=25.46 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=30.2
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.++..+.|+.| ++.+-.+.-+++-|+.-|||++.
T Consensus 61 ~~~~~~ela~~l----------~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 61 DGLSMGKLSGAL----------KVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TCEEHHHHHHHC----------SSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCHHHHHHHH----------CCChhhHHHHHHHHHHCCCEEee
Confidence 458888888888 66777888899999999999997
No 111
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=27.81 E-value=55 Score=24.93 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=30.5
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+--++-+++.|+.-|||++..
T Consensus 55 ~~~t~~ela~~l----------~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 55 GDLTVGELSNKM----------YLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp CSBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHH----------CCCchhHHHHHHHHHHCCCeeecC
Confidence 357788888887 678889999999999999999973
No 112
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=27.30 E-value=81 Score=24.50 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=30.9
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| .+.+=.+.-+++-|+.-|||+|..
T Consensus 63 ~~~t~~eLa~~l----------~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 63 DGINQESLSDYL----------KIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp CSEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEEec
Confidence 457888888888 677888999999999999999983
No 113
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.22 E-value=99 Score=24.25 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=42.1
Q ss_pred CHHHHHHH--HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheeccc
Q 042344 78 SLGLLTQN--FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHT 142 (302)
Q Consensus 78 SLglLTqk--FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~ 142 (302)
.|....+| .+++|... .+.++.++..+.|.... ..+.+=-+|-..+.|+..|||.|...
T Consensus 6 g~r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~-----~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 6 GVRSTRQRAAISTLLETL-DDFRSAQELHDELRRRG-----ENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred cCCCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhC-----CCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 34444444 56666665 46899999999994321 13455679999999999999999854
No 114
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=27.14 E-value=37 Score=26.14 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=29.3
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+--+.-+++-|+.-|||++..
T Consensus 60 ~~~t~~ela~~l----------~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 60 DERSVSEIGERL----------YLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp CSEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHh----------CCCcccHHHHHHHHHHCCCEeecC
Confidence 346777777776 677788999999999999999973
No 115
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=26.64 E-value=47 Score=26.73 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHH----HHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 75 REKSLGLLTQNF----VRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 75 kdKSLglLTqkF----V~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
-...|.++..+. +..+. .+.+++.+.++.| ++.+.-|....+.|+.-|||+|..
T Consensus 14 ~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~l----------gis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 14 VARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSL----------GLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp TTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHH----------CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHh----------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455788876443 22222 3679999999999 688899999999999999999983
No 116
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=26.63 E-value=47 Score=29.38 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=31.7
Q ss_pred eecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 97 MITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 97 vIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+++.+.|+.+ ++..|.++-+..+|.++||+++.
T Consensus 56 ~~t~~elA~~~----------~~~~~~l~rlLr~L~~~gll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASF----------GMVEGKAAILLHALAALGLLTKE 89 (352)
T ss_dssp CBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHh----------CcChHHHHHHHHHHHHCCCeEec
Confidence 79999999999 78889999999999999999986
No 117
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=26.54 E-value=48 Score=29.65 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=30.6
Q ss_pred ceecHHHHHHHHhcCcCCcccccc---chhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRT---KVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kv---kkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|+.+ ++ ..++|+-+..+|.++||+++.
T Consensus 50 ~~~t~~ela~~~----------~~~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 50 KPISLSNLVSIL----------QVPSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp SCEEHHHHHHHH----------TCCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHh----------CcCCCChHHHHHHHHHHHhCCeEEEe
Confidence 469999999998 45 578999999999999999876
No 118
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=26.45 E-value=35 Score=25.99 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=30.2
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| .+.+--++-+++-|+.-|||++..
T Consensus 53 ~~~~~~~la~~l----------~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQL----------YLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTT----------TCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHH----------CCCcCcHHHHHHHHHHCCCEEecc
Confidence 357777777777 677888999999999999999974
No 119
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=26.12 E-value=57 Score=28.96 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=31.7
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|+.+ ++..+.|+-+..+|.++||+++.
T Consensus 51 ~~~t~~ela~~~----------~~~~~~l~r~L~~L~~~g~~~~~ 85 (360)
T 1tw3_A 51 GARTVKALAART----------DTRPEALLRLIRHLVAIGLLEED 85 (360)
T ss_dssp TCCBHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHh----------CcCHHHHHHHHHHHHHCCCEEec
Confidence 568999999999 67889999999999999999885
No 120
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=26.07 E-value=85 Score=23.56 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=32.2
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+.+++.+.|+.|. ++.+..|+...+.|+.-|||+|..
T Consensus 25 ~~~~~~~eLa~~l~---------~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMP---------NITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCT---------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhc---------CCCHHHHHHHHHHHHHCCCEEEee
Confidence 46789999998872 467789999999999999999983
No 121
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.01 E-value=28 Score=26.21 Aligned_cols=34 Identities=6% Similarity=-0.008 Sum_probs=30.7
Q ss_pred eecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 97 MITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 97 vIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.++..+.|+.| ++.+-.++-+++-|+.-|+|++.
T Consensus 50 ~~t~~ela~~l----------~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 50 EMESYQLANQA----------CILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp SEEHHHHHHHT----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHH----------CCCHhHHHHHHHHHHHCCCEEee
Confidence 58999999988 67788999999999999999997
No 122
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=25.73 E-value=46 Score=25.34 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=30.9
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.+..+... +.++..+.|+.| ++.+=.+.-+++-|+.-|||+|..
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l----------~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQM----------CRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHH----------C---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhC--CCcCHHHHHHHh----------CCCHHHHHHHHHHHHHCCCEeecc
Confidence 34444443 358899999998 677788899999999999999973
No 123
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=25.62 E-value=1.2e+02 Score=26.19 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=36.0
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+++|... .+.+++.+.|+.| +..+=-+|-+.+.|+..|+|++.
T Consensus 13 iL~~l~~~-~~~~~~~ela~~~----------gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 13 ILDFIVKN-PGDVSVSEIAEKF----------NMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHT----------TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCcEEEC
Confidence 44555554 3469999999999 67788899999999999999986
No 124
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.17 E-value=59 Score=25.47 Aligned_cols=36 Identities=19% Similarity=0.082 Sum_probs=29.6
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+=-+.-+++-|+.-|||+|..
T Consensus 59 ~~~t~~eLa~~l----------~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 59 PNLSNAKLAERS----------FIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp TTCCHHHHHHHH----------TSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCcCeEecC
Confidence 357777777777 677778888999999999999984
No 125
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=25.17 E-value=1.7e+02 Score=22.23 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 77 KSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 77 KSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
..|..-=..++.++..+...-|+..+.|+.+ .....-+-=|..-||.-|||.++
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~----------~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKS----------NLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHT----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEEe
Confidence 3343333456667776444569999999999 67778888899999999999965
No 126
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=24.89 E-value=1.3e+02 Score=24.77 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 85 NFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 85 kFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+.+|-..++..++..+.|+.+ ++.+.-|.-|...|..-|||+-.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~----------~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSL----------HLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHH----------TSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEee
Confidence 33444444456789999999999 78889999999999999999765
No 127
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=24.80 E-value=68 Score=28.09 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=32.9
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+++.+.|+.| +..+=-+|-|.+.|+..|+|++.
T Consensus 19 ~~~lsl~eia~~l----------gl~ksT~~RlL~tL~~~G~v~~~ 54 (260)
T 3r4k_A 19 RLEIGLSDLTRLS----------GMNKATVYRLMSELQEAGFVEQV 54 (260)
T ss_dssp BSEEEHHHHHHHH----------CSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEc
Confidence 4789999999999 67788899999999999999997
No 128
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=24.15 E-value=46 Score=24.52 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=29.2
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecccCCCCCCcEEeecccc
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNR 157 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn~iqWiG~~~ 157 (302)
...+++.|||+.| ++-+..||..++- +. ..+.+.|+|...
T Consensus 14 K~~LTi~EaAeyl----------gIg~~~l~~L~~~--------~~-----~~~~~~~iG~~~ 53 (70)
T 1y6u_A 14 RYTLTIEEASKYF----------RIGENKLRRLAEE--------NK-----NANWLIMNGNRI 53 (70)
T ss_dssp SSEEEHHHHHHHT----------CSCHHHHHHHHHH--------CT-----TCSSEEEETTEE
T ss_pred cceeCHHHHHHHH----------CcCHHHHHHHHHc--------CC-----CCCcEEEeCCEE
Confidence 5789999999999 7888999987631 11 245567777664
No 129
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=23.56 E-value=1.1e+02 Score=26.35 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=18.8
Q ss_pred chhhhhhHHHHHhhhhhheec
Q 042344 120 KVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 120 kkRRLYDItNVLEgIgLIEK~ 140 (302)
..++++.+.+.|+.+|||++.
T Consensus 328 ~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 328 TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEE
Confidence 348899999999999999987
No 130
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=23.31 E-value=52 Score=29.49 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=30.7
Q ss_pred ceecHHHHHHHHhcCcCCcccccc---chhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRT---KVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kv---kkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.+.|+.+ ++ ..++|+-+..+|.++||+++.
T Consensus 44 ~~~t~~eLA~~~----------g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 44 KPMTLSELASSL----------KLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp SCEEHHHHHHHT----------TCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHhc----------CCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 469999999998 45 578999999999999999876
No 131
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.30 E-value=1e+02 Score=24.83 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 82 LTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 82 LTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+-++.+.+|+. ++.++..+.|+.| ++..--+..-.+-|+.-|+|.+.+
T Consensus 4 ~d~~il~~L~~--~~~~s~~~la~~l----------g~s~~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 4 LDRKILRILQE--DSTLAVADLAKKV----------GLSTTPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp HHHHHHHHHTT--CSCSCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHH--CCCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeeece
Confidence 34567777776 4679999999999 566666667788999999998763
No 132
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=23.28 E-value=78 Score=24.66 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhh
Q 042344 72 DSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLY 125 (302)
Q Consensus 72 ~~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLY 125 (302)
..|....-..|-.-.++||...+-.-+++.++|+.. ++.+.-||
T Consensus 26 ~~~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~a----------gvs~~t~Y 69 (218)
T 3dcf_A 26 GRTGNDRRTQIIKVATELFREKGYYATSLDDIADRI----------GFTKPAIY 69 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHH----------TCCHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHcCcccCcHHHHHHHh----------CCCHHHHH
Confidence 344555566788889999999877889999999998 56666666
No 133
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=23.22 E-value=1.4e+02 Score=23.29 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=34.9
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
++..|... .+.++..+.++.|..+ ..+.+=-+|-+.+-|+.-|+|++.
T Consensus 14 vL~~L~~~-~~~~t~~el~~~l~~~------~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 14 VMDHLWSR-TEPQTVRQVHEALSAR------RDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHTC-SSCEEHHHHHHHHTTT------CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhc-CCCCCHHHHHHHHhcc------CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 44444442 2579999999999311 014567899999999999999998
No 134
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=23.00 E-value=84 Score=24.48 Aligned_cols=35 Identities=9% Similarity=0.177 Sum_probs=31.5
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+.+++.++|+.| +..+--++-..+.|+..|||.+.
T Consensus 58 ~~~s~~ela~~l----------gis~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 58 SELCVGDLAQAI----------GVSESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp CCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 568999999999 67788999999999999999876
No 135
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=22.97 E-value=1.1e+02 Score=24.58 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcC--CccccccchhhhhhHHHHHhhhhhheec
Q 042344 79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAH--NTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~--~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
|..--..++.+|...+..+++-.+.|..|.+... .+..+++.++||+.=.++-....+|...
T Consensus 160 Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~~~~~~i~~~ 223 (233)
T 1ys7_A 160 LTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTV 223 (233)
T ss_dssp CCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC--CCCEEEE
T ss_pred cCHHHHHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhccCCCCCeEEEe
Confidence 4444466888888888889999999999975432 2346778888888877764444556554
No 136
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=22.94 E-value=1.1e+02 Score=28.31 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=27.9
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.+++.+.|+.| .+.+=+|=-+++-||.-|||+|..
T Consensus 419 ~~~~~~~l~~~~----------~~~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 419 NEISSKEIAKCS----------EFKPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp SEEEHHHHHHSS----------CCCHHHHHHHHHHHHTTTTSCCEE
T ss_pred CCcCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEeecC
Confidence 556666666666 566777888899999999999984
No 137
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=22.91 E-value=90 Score=28.28 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=34.7
Q ss_pred HHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 87 VRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 87 V~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
..+|... .+.+++.+.|..+ ++..+.++-+..+|.++||+++.
T Consensus 34 fd~L~~~-~~p~t~~eLA~~~----------g~~~~~l~rlLr~L~~~gll~~~ 76 (353)
T 4a6d_A 34 FDLLAEA-PGPLDVAAVAAGV----------RASAHGTELLLDICVSLKLLKVE 76 (353)
T ss_dssp HHHHHHS-SSCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CCCCCHHHHHHhh----------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3444444 3679999999999 77889999999999999999865
No 138
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=21.91 E-value=1.3e+02 Score=22.34 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHH
Q 042344 82 LTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVL 131 (302)
Q Consensus 82 LTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVL 131 (302)
+..+++.++.......++++++|+.+ ++..|.|.-+..-.
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~----------~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYV----------GVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHH----------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHH----------CcCHHHHHHHHHHH
Confidence 45677888888777779999999999 55566666544433
No 139
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=21.60 E-value=79 Score=27.47 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=32.7
Q ss_pred CceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 95 VDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 95 ~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+++.+.|+.+ +..+=-+|-+.+.|+..|+|++.
T Consensus 27 ~~~~~~~eia~~~----------gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 27 RPNPTLAELATEA----------GLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp CSSCBHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEeC
Confidence 4679999999999 67888999999999999999986
No 140
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=21.54 E-value=56 Score=25.59 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=30.5
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
+.++..+.|+.| ++.+=-+.-+++-|+.-|||+|..
T Consensus 66 ~~~t~~eLa~~l----------~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLG----------VMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHT----------TCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEEeeC
Confidence 467888888887 677788999999999999999984
No 141
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=21.51 E-value=91 Score=24.56 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=32.0
Q ss_pred ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344 96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH 141 (302)
Q Consensus 96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~ 141 (302)
.-++..+.|+.+ ++..+-+..+.+-|+.-|+|++..
T Consensus 50 ~~ps~~~LA~~l----------~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 50 LFPTPAELAERM----------TVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SSCCHHHHHHTS----------SSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 347999999998 788899999999999999999983
No 142
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.46 E-value=2e+02 Score=21.84 Aligned_cols=73 Identities=8% Similarity=0.159 Sum_probs=42.3
Q ss_pred hhhhhHHHHHhhhhhheecccCCCCCCcEEeecccccccccccccCcchHHHhhhHHHHHHHHHHHHhHHHHhhhhcch
Q 042344 122 RRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQ 200 (302)
Q Consensus 122 RRLYDItNVLEgIgLIEK~~~~~~sKn~iqWiG~~~~~n~~~~a~~~~~s~kr~l~~El~nL~~~E~~LD~~I~~~~~q 200 (302)
+-+-.+--|++.|.++.-. .+.|+=+|.-.+......+.+....++..+..+|..|..+...+...+......
T Consensus 34 ~~~~e~~~~~~eL~~l~~d------~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 34 LELTEAKKALDEIESLPDD------AVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHTSCTT------CCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC------cHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666666432 357888886554433333333345666777777777777777776666655443
No 143
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=20.94 E-value=48 Score=25.50 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=34.0
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+|.. +.++..+.|+.| ++.+--++-..+.|+..|||++.
T Consensus 26 IL~~L~~---~~~~~~eLa~~l----------gis~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 26 ILVALLD---GVCYPGQLAAHL----------GLTRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp HHHHHHT---TCCSTTTHHHHH----------SSCHHHHHHHHHHHTTTTSEEEE
T ss_pred HHHHHHc---CCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCceEEE
Confidence 4455443 347888999999 67888999999999999999876
No 144
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.84 E-value=1.7e+02 Score=23.40 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=41.5
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecccCCCCCCcEEe
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRW 152 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn~iqW 152 (302)
.+++|... .+.++.++..+.|.... ..+..=-+|-..+.|+..|||.|..... +...|..
T Consensus 27 Il~~L~~~-~~~~sa~ei~~~l~~~~-----~~is~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~ 86 (145)
T 2fe3_A 27 ILEYLVNS-MAHPTADDIYKALEGKF-----PNMSVATVYNNLRVFRESGLVKELTYGD-ASSRFDF 86 (145)
T ss_dssp HHHHHHHC-SSCCCHHHHHHHHGGGC-----TTCCHHHHHHHHHHHHHTTSEEEECCTT-SCCEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhC-----CCCChhhHHHHHHHHHHCCCEEEEeeCC-CceEEEC
Confidence 56666664 46799999999984221 1344567999999999999999985432 2344554
No 145
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=20.84 E-value=1.1e+02 Score=22.56 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhh
Q 042344 82 LTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSS 133 (302)
Q Consensus 82 LTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEg 133 (302)
+..+++.++.......++++++|+.+ ++.+|.|+-+..-.-|
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~----------~~S~~~l~r~fk~~~G 47 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDF----------HINAVYLGQLFQKEMG 47 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHH----------TSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHH----------CcCHHHHHHHHHHHHC
Confidence 34566777777666679999999999 5556666655443333
No 146
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=20.80 E-value=53 Score=25.14 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=34.1
Q ss_pred HHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 86 FVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 86 FV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
.+.+|. .+.++..+.|+.| ++.+-.+.-..++|+..|||++.
T Consensus 23 Il~~L~---~~~~~~~eLa~~l----------~is~~tvs~hL~~L~~~GlV~~~ 64 (118)
T 3f6o_A 23 VLGRLS---RGPATVSELAKPF----------DMALPSFMKHIHFLEDSGWIRTH 64 (118)
T ss_dssp HHHHHH---TCCEEHHHHHTTC----------CSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHH---hCCCCHHHHHHHh----------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 444444 3568999999998 67788899999999999999876
No 147
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=20.35 E-value=61 Score=29.26 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=29.2
Q ss_pred ecHHHHHHHHhcCcCCcccccc------chhhhhhHHHHHhhhhhheec
Q 042344 98 ITLDEVAKLLLGDAHNTSVMRT------KVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 98 IdLneAA~~L~g~~~~~s~~kv------kkRRLYDItNVLEgIgLIEK~ 140 (302)
+++.+.|..+ ++ ..++|+-+..+|.++||+++.
T Consensus 63 ~t~~eLA~~~----------~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 63 MSPSEIASKL----------PASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp BCHHHHHTTS----------CGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHhc----------CCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 8999999888 55 679999999999999999876
No 148
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=20.17 E-value=85 Score=27.46 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344 87 VRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT 140 (302)
Q Consensus 87 V~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~ 140 (302)
+++|... .+.+++.+.|+.| +..+=-+|-+.+.|+..|+|++.
T Consensus 27 L~~l~~~-~~~~~~~eia~~~----------gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 27 IRCFDHR-NQRRTLSDVARAT----------DLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp HHTCCSS-CSSEEHHHHHHHH----------TCCHHHHHHHHHHHHHHTSEEES
T ss_pred HHHHHhC-CCCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEec
Confidence 3444333 3679999999999 67888999999999999999986
Done!