BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042351
(716 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 342 bits (876), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 184/341 (53%), Positives = 229/341 (67%), Gaps = 23/341 (6%)
Query: 150 KIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLN 209
+I V VRKRPLN P L VHE KLKVDLT+Y+E F FD +
Sbjct: 52 RICVCVRKRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFD 110
Query: 210 EDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM------------QPLPLK 257
E +NE VY T P+V IF KATCFAYGQTGSGKT+TM + +
Sbjct: 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAM 170
Query: 258 ASHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQE 316
AS D+ L +Q +R G ++YV+FFEIY GK+FDLLN + KL + EDGKQQV +VGLQE
Sbjct: 171 ASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQE 230
Query: 317 YRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKL 376
+ V++ D + ++I+ G+A R++G T AN SSRSHA Q+ ++ A G R+ GK
Sbjct: 231 HLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR--AKG------RMHGKF 282
Query: 377 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVL 436
S +DLAG+ERGADT+ D+QTRMEGAEINKSLLALKECIRAL ++ H PFR SKLT+VL
Sbjct: 283 SLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVL 342
Query: 437 RDSFVGD-SRTVMISCISPSSGSCEHTINTLRYADRVKSLS 476
RDSF+G+ SRT MI+ ISP SCE+T+NTLRYADRVK LS
Sbjct: 343 RDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELS 383
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 340 bits (873), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 190/384 (49%), Positives = 238/384 (61%), Gaps = 28/384 (7%)
Query: 107 GKSFDDSEPYMSTSKLTNRIRGVPENSLLKSFSGDKERANNVAKIKVVVRKRPLNXXXXX 166
+ +D S P +++ R E S L +E +I V VRKRPLN
Sbjct: 34 AQEYDSSFPNWEFARMIKEFRVTMECSPLTVTDPIEEH-----RICVCVRKRPLNKQELA 88
Query: 167 XXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226
P L VHE KLKVDLT+Y+E F FD +E +NE VY T P+V
Sbjct: 89 KKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 147
Query: 227 PLIFHRTKATCFAYGQTGSGKTYTM------------QPLPLKASHDILRLMHQ-MHRSQ 273
IF KATCFAYGQTGSGKT+TM + + AS D+ L +Q +R+
Sbjct: 148 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNL 207
Query: 274 GFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGN 333
++YV+FFEIY GKVFDLLN + KL + ED +QQV +VGLQEY V+ D + ++I G+
Sbjct: 208 NLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGS 267
Query: 334 ATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDN 393
A R++G T AN SSRSHA Q+ ++ RL GK S +DLAG+ERGADT+
Sbjct: 268 ACRTSGQTFANSNSSRSHACFQILLR--------TKGRLHGKFSLVDLAGNERGADTSSA 319
Query: 394 DKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGD-SRTVMISCI 452
D+QTRMEGAEINKSLLALKECIRAL ++ H PFR SKLT+VLRDSF+G+ SRT MI+ I
Sbjct: 320 DRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMI 379
Query: 453 SPSSGSCEHTINTLRYADRVKSLS 476
SP SCE+T+NTLRYADRVK LS
Sbjct: 380 SPGISSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 339 bits (869), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 182/340 (53%), Positives = 223/340 (65%), Gaps = 23/340 (6%)
Query: 151 IKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNE 210
I V VRKRPLN P L VHE KLKVDLT+Y+E F FD +E
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 59
Query: 211 DVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM------------QPLPLKA 258
+NE VY T P+V IF KATCFAYGQTGSGKT+TM + + A
Sbjct: 60 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 119
Query: 259 SHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQEY 317
S D+ L +Q +R+ ++YV+FFEIY GKVFDLLN + KL + ED +QQV +VGLQEY
Sbjct: 120 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEY 179
Query: 318 RVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLS 377
V+ D + ++I G+A R++G T AN SSRSHA Q+ ++ RL GK S
Sbjct: 180 LVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR--------TKGRLHGKFS 231
Query: 378 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 437
+DLAG+ERGADT+ D+QTRMEGAEINKSLLALKECIRAL ++ H PFR SKLT+VLR
Sbjct: 232 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 291
Query: 438 DSFVGD-SRTVMISCISPSSGSCEHTINTLRYADRVKSLS 476
DSF+G+ SRT MI+ ISP SCE+T+NTLRYADRVK LS
Sbjct: 292 DSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 327 bits (839), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/340 (51%), Positives = 222/340 (65%), Gaps = 23/340 (6%)
Query: 150 KIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLN 209
+I V VRKRPLN P + + VHE K KVDLT Y+E F FD +
Sbjct: 90 RICVCVRKRPLNKKETQMKDLDVITI-PSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFD 148
Query: 210 EDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM------------QPLPLK 257
+ NE VY T P+V IF R ATCFAYGQTGSGKT+TM + +
Sbjct: 149 DSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYAL 208
Query: 258 ASHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQE 316
A+ D+ ++ + ++ Q+Y +FFEIY GKVFDLLN + KL + EDGKQQV +VGLQE
Sbjct: 209 AARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQE 268
Query: 317 YRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKL 376
V V+ + +LI+ GN+ R++G T AN SSRSHA+ Q+ ++R +L GK
Sbjct: 269 REVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--------KLHGKF 320
Query: 377 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVL 436
S IDLAG+ERGADT+ D+QTR+EGAEINKSLLALKECIRAL ++ H PFR SKLT+VL
Sbjct: 321 SLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVL 380
Query: 437 RDSFVGD-SRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
RDSF+G+ SRT MI+ ISP SCE+T+NTLRYA+RVK L
Sbjct: 381 RDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/344 (46%), Positives = 217/344 (63%), Gaps = 27/344 (7%)
Query: 151 IKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNE 210
IKVVVRKRPL+ + + L + E + KVD+T+Y+ERHEF+ D V ++
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCT-LYIDEPRYKVDMTKYIERHEFIVDKVFDD 60
Query: 211 DVTNEEVYSETVEP-IVPLIFHRTKATCFAYGQTGSGKTYTM---QP--------LPLKA 258
V N VY T++P I+ L + +CFAYGQTGSGKTYTM QP + A
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 259 SHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQEYR 318
+ DI ++ + +++SF+EIY GK++DLL RK + E+GK++V + L+ R
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILR 180
Query: 319 VSNVDTIRELIEK---GNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGK 375
V T ELI K G R G N+ESSRSHAIL + +K D +GK
Sbjct: 181 VL---TKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK------DINKNTSLGK 231
Query: 376 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEV 435
++FIDLAGSERGADT +KQT+ +GA IN+SLLALKECIRA+D+D+ HIPFR S+LT+V
Sbjct: 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKV 291
Query: 436 LRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGN 479
LRD FVG S+++MI+ ISP+ CE T+NTLRY+ RVK +KGN
Sbjct: 292 LRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK--NKGN 333
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 179/348 (51%), Gaps = 37/348 (10%)
Query: 149 AKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVL 208
A ++V +R RPL H + L V +V L +RH F F VL
Sbjct: 11 APVRVALRVRPL---------LPKELLHGHQSCLQVEPGLGRVTLGR--DRH-FGFHVVL 58
Query: 209 NEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM------------QPLPL 256
ED E VY V+P++ F AT FAYGQTGSGKTYTM Q +
Sbjct: 59 AEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVP 118
Query: 257 KASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLL---NDRKKLCMREDGKQQVCIVG 313
+A + +L+ + ++VS+ E+Y + DLL + + +RED + V + G
Sbjct: 119 RAMAEAFKLIDENDLLDCL-VHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCG 177
Query: 314 LQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKP---- 369
++E V +D + L+E GNA R TG T N SSRSH + + +K+ P
Sbjct: 178 VKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAP 237
Query: 370 -ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHI 425
LV K F+DLAGSER T + + R E +IN SLLAL I AL + Q +I
Sbjct: 238 GQLLVSKFHFVDLAGSER-VLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNI 296
Query: 426 PFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473
P+R SK+T +L+DS G+++TVMI+C+SPSS + T+NTL YA R +
Sbjct: 297 PYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/362 (35%), Positives = 180/362 (49%), Gaps = 34/362 (9%)
Query: 139 SGDKERANNVAKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVE 198
S K++ I+VVVR RP N P ++V L +
Sbjct: 7 SSAKKKEEKGKNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTG----GLADKSS 62
Query: 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ------ 252
R + FD V +VY V PI+ + AT FAYGQTG+GKT+TM+
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPN 122
Query: 253 --------PLPLKASHDILRLMHQMHR-----SQGFQLYVSFFEIYGGKVFDLLNDR--- 296
PL + I R +HQ+ F + VS EIY ++FDLLN
Sbjct: 123 EEYCWEEDPL----AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDV 178
Query: 297 -KKLCMRED--GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAI 353
++L M +D K+ V I GL+E V N D + +++EKG A R+T T N SSRSH++
Sbjct: 179 SERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 238
Query: 354 LQLAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKE 413
+ I D + +GKL+ +DLAGSE + DK+ R E IN+SLL L
Sbjct: 239 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGR 297
Query: 414 CIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473
I AL H+P+R SKLT +L+DS G +RT +I+ ISP+S + E T++TL YA R K
Sbjct: 298 VITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK 357
Query: 474 SL 475
++
Sbjct: 358 NI 359
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/348 (36%), Positives = 179/348 (51%), Gaps = 37/348 (10%)
Query: 149 AKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVL 208
A ++V +R RPL H + L V +V L +RH F F VL
Sbjct: 11 APVRVALRVRPL---------LPKELLHGHQSCLQVEPGLGRVTLGR--DRH-FGFHVVL 58
Query: 209 NEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM------------QPLPL 256
ED E VY V+P++ F AT FAYGQTGSGKTYTM Q +
Sbjct: 59 AEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVP 118
Query: 257 KASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLL---NDRKKLCMREDGKQQVCIVG 313
+A + +L+ + ++VS+ E+Y + DLL + + +RED + V + G
Sbjct: 119 RAMAEAFKLIDENDLLDCL-VHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCG 177
Query: 314 LQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKP---- 369
++E V +D + L+E GNA R TG T N SSRSH + + +++ P
Sbjct: 178 VKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAP 237
Query: 370 -ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHI 425
LV K F+DLAGSER T ++ + E +IN SLLAL I AL + Q HI
Sbjct: 238 GQLLVSKFHFVDLAGSERVLKTGSTGERLK-ESIQINSSLLALGNVISALGDPQRRGSHI 296
Query: 426 PFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473
P+R SK+T +L+DS G+++TVMI+C+SPSS + T+NTL YA R +
Sbjct: 297 PYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 180/346 (52%), Gaps = 16/346 (4%)
Query: 151 IKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNE 210
++VVVR RP+N ++V K T + F FDAV +
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKG----TAHEMPKTFTFDAVYDW 78
Query: 211 DVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPL---PLKAS---HDILR 264
+ E+Y ET P+V + T FAYGQTG+GKTYTM+ + P K +
Sbjct: 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDH 138
Query: 265 LMHQMHRSQGFQLYV--SFFEIYGGKVFDLL--NDRKKLCMREDGKQQVCIVGLQEYRVS 320
+ + RSQ Q V S+ EIY ++ DLL + K+L ++E V + L +
Sbjct: 139 IFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTK 198
Query: 321 NVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFID 380
+V I ++ GN RS G T NE SSRSHAI + I+ S G D + VGKL+ +D
Sbjct: 199 SVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVD 258
Query: 381 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDS 439
LAGSER A T ++ + E +IN SL AL I AL D HIP+R SKLT +L+DS
Sbjct: 259 LAGSERQAKTGAQGERLK-EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 317
Query: 440 FVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRDP 485
G+++TVM++ + P+S + E T+ TLRYA+R K++ DP
Sbjct: 318 LGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDP 363
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 188/344 (54%), Gaps = 13/344 (3%)
Query: 151 IKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEY--VERHEFVFDAVL 208
IKV+VR RPLN S + V + + T+ V R F FDAV
Sbjct: 6 IKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPR-TFTFDAVY 64
Query: 209 NEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-----QP--LPLKASHD 261
++ N ++ + +P++ + +T FAYGQTG+GKT+TM +P +P H
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH- 123
Query: 262 ILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSN 321
+ ++ +Q F + S+ E+Y ++ DL+ + KL ++ED + + + GL +RV+
Sbjct: 124 LFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTT 183
Query: 322 VDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDL 381
+ L++KG A R T N+ SSRSH+I + I+ S + ++K VGKL+ +DL
Sbjct: 184 AAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECS-EVIENKEVIRVGKLNLVDL 242
Query: 382 AGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFV 441
AGSER + T +T +EGA+IN SL AL I L HIP+R SKLT +L+DS
Sbjct: 243 AGSERQSKTGATG-ETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLG 301
Query: 442 GDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRDP 485
G+S+T+M + ISP+S + + T++TLRYADR K + DP
Sbjct: 302 GNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 179/360 (49%), Gaps = 30/360 (8%)
Query: 139 SGDKERANNVAKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVE 198
S K++ I+VVVR RP N P ++V L +
Sbjct: 7 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSS 62
Query: 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ------ 252
R + FD V +VY V PI+ + T FAYGQTG+GKT+TM+
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 122
Query: 253 ------PLPLKASHDILRLMHQMHR-----SQGFQLYVSFFEIYGGKVFDLLNDR----K 297
+PL I R +HQ+ F + VS EIY ++FDLLN +
Sbjct: 123 EEYTWEEVPLAGI--IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
Query: 298 KLCMRED--GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQ 355
+L M +D K+ V I GL+E V N D + +++EKG A R+T T N SSRSH++
Sbjct: 181 RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS 240
Query: 356 LAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECI 415
+ I D + +GKL+ +DLAGSE + DK+ R E IN+SLL L I
Sbjct: 241 VTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVI 299
Query: 416 RALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
AL H+P+R SKLT +L+DS G +RT +I+ ISP+S + E T++TL YA R K++
Sbjct: 300 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 179/362 (49%), Gaps = 34/362 (9%)
Query: 139 SGDKERANNVAKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVE 198
S K++ I+VVVR RP N P ++V L +
Sbjct: 6 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSS 61
Query: 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ------ 252
R + FD V +VY V PI+ + T FAYGQTG+GKT+TM+
Sbjct: 62 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 121
Query: 253 --------PLPLKASHDILRLMHQMHR-----SQGFQLYVSFFEIYGGKVFDLLNDR--- 296
PL + I R +HQ+ F + VS EIY ++FDLLN
Sbjct: 122 EEYTWEEDPL----AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDV 177
Query: 297 -KKLCMRED--GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAI 353
++L M +D K+ V I GL+E V N D + +++EKG A R+T T N SSRSH++
Sbjct: 178 SERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 237
Query: 354 LQLAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKE 413
+ I D + +GKL+ +DLAGSE + DK+ R E IN+SLL L
Sbjct: 238 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGR 296
Query: 414 CIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473
I AL H+P+R SKLT +L+DS G +RT +I+ ISP+S + E T++TL YA R K
Sbjct: 297 VITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK 356
Query: 474 SL 475
++
Sbjct: 357 NI 358
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 179/362 (49%), Gaps = 34/362 (9%)
Query: 139 SGDKERANNVAKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVE 198
S K++ I+VVVR RP N P ++V L +
Sbjct: 7 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSS 62
Query: 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ------ 252
R + FD V +VY V PI+ + T FAYGQTG+GKT+TM+
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 122
Query: 253 --------PLPLKASHDILRLMHQMHR-----SQGFQLYVSFFEIYGGKVFDLLNDR--- 296
PL + I R +HQ+ F + VS EIY ++FDLLN
Sbjct: 123 EEYTWEEDPL----AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDV 178
Query: 297 -KKLCMRED--GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAI 353
++L M +D K+ V I GL+E V N D + +++EKG A R+T T N SSRSH++
Sbjct: 179 SERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 238
Query: 354 LQLAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKE 413
+ I D + +GKL+ +DLAGSE + DK+ R E IN+SLL L
Sbjct: 239 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGR 297
Query: 414 CIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473
I AL H+P+R SKLT +L+DS G +RT +I+ ISP+S + E T++TL YA R K
Sbjct: 298 VITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK 357
Query: 474 SL 475
++
Sbjct: 358 NI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 179/362 (49%), Gaps = 34/362 (9%)
Query: 139 SGDKERANNVAKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVE 198
S K++ I+VVVR RP N P ++V L +
Sbjct: 9 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSS 64
Query: 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ------ 252
R + FD V +VY V PI+ + T FAYGQTG+GKT+TM+
Sbjct: 65 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 124
Query: 253 --------PLPLKASHDILRLMHQMHR-----SQGFQLYVSFFEIYGGKVFDLLNDR--- 296
PL + I R +HQ+ F + VS EIY ++FDLLN
Sbjct: 125 EEYTWEEDPL----AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDV 180
Query: 297 -KKLCMRED--GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAI 353
++L M +D K+ V I GL+E V N D + +++EKG A R+T T N SSRSH++
Sbjct: 181 SERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 240
Query: 354 LQLAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKE 413
+ I D + +GKL+ +DLAGSE + DK+ R E IN+SLL L
Sbjct: 241 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGR 299
Query: 414 CIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473
I AL H+P+R SKLT +L+DS G +RT +I+ ISP+S + E T++TL YA R K
Sbjct: 300 VITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK 359
Query: 474 SL 475
++
Sbjct: 360 NI 361
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 179/362 (49%), Gaps = 34/362 (9%)
Query: 139 SGDKERANNVAKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVE 198
S K++ I+VVVR RP N P ++V L +
Sbjct: 7 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSS 62
Query: 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ------ 252
R + FD V +VY V PI+ + T FAYGQTG+GKT+TM+
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 122
Query: 253 --------PLPLKASHDILRLMHQMHR-----SQGFQLYVSFFEIYGGKVFDLLNDR--- 296
PL + I R +HQ+ F + VS EIY ++FDLLN
Sbjct: 123 EEYTWEEDPL----AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDV 178
Query: 297 -KKLCMRED--GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAI 353
++L M +D K+ V I GL+E V N D + +++EKG A R+T T N SSRSH++
Sbjct: 179 SERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 238
Query: 354 LQLAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKE 413
+ I D + +GKL+ +DLAGSE + DK+ R E IN+SLL L
Sbjct: 239 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGR 297
Query: 414 CIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473
I AL H+P+R SKLT +L+DS G +RT +I+ ISP+S + E T++TL YA R K
Sbjct: 298 VITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK 357
Query: 474 SL 475
++
Sbjct: 358 NI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 178/360 (49%), Gaps = 30/360 (8%)
Query: 139 SGDKERANNVAKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVE 198
S K++ I+VVVR RP N P ++V L +
Sbjct: 7 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSS 62
Query: 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPL---- 254
R + FD V +VY V PI+ + T FAYGQTG+GKT+TM+
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 122
Query: 255 --------PLKASHDILRLMHQMHR-----SQGFQLYVSFFEIYGGKVFDLLNDR----K 297
PL I R +HQ+ F + VS EIY ++FDLLN +
Sbjct: 123 EEYTWEEDPLDGI--IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
Query: 298 KLCMRED--GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQ 355
+L M +D K+ V I GL+E V N D + +++EKG A R+T T N SSRSH++
Sbjct: 181 RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS 240
Query: 356 LAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECI 415
+ I D + +GKL+ +DLAGSE + DK+ R E IN+SLL L I
Sbjct: 241 VTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVI 299
Query: 416 RALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
AL H+P+R SKLT +L+DS G +RT +I+ ISP+S + E T++TL YA R K++
Sbjct: 300 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 175/350 (50%), Gaps = 34/350 (9%)
Query: 151 IKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNE 210
I+VVVR RP N P ++V L + R + FD V
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSSRKTYTFDMVFGA 65
Query: 211 DVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ--------------PLPL 256
+VY V PI+ + T FAYGQTG+GKT+TM+ PL
Sbjct: 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL-- 123
Query: 257 KASHDILRLMHQMHR-----SQGFQLYVSFFEIYGGKVFDLLNDR----KKLCMRED--G 305
+ I R +HQ+ F + VS EIY ++FDLLN ++L M +D
Sbjct: 124 --AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 181
Query: 306 KQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGS 365
K+ V I GL+E V N D + +++EKG A R+T T N SSRSH++ + I
Sbjct: 182 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 241
Query: 366 DSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHI 425
D + +GKL+ +DLAGSE + DK+ R E IN+SLL L I AL H+
Sbjct: 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHV 300
Query: 426 PFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
P+R SKLT +L+DS G +RT +I+ ISP+S + E T++TL YA R K++
Sbjct: 301 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 175/350 (50%), Gaps = 34/350 (9%)
Query: 151 IKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNE 210
I+VVVR RP N P ++V L + R + FD V
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSSRKTYTFDMVFGA 59
Query: 211 DVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ--------------PLPL 256
+VY V PI+ + T FAYGQTG+GKT+TM+ PL
Sbjct: 60 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL-- 117
Query: 257 KASHDILRLMHQMHR-----SQGFQLYVSFFEIYGGKVFDLLNDR----KKLCMRED--G 305
+ I R +HQ+ F + VS EIY ++FDLLN ++L M +D
Sbjct: 118 --AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 175
Query: 306 KQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGS 365
K+ V I GL+E V N D + +++EKG A R+T T N SSRSH++ + I
Sbjct: 176 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 235
Query: 366 DSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHI 425
D + +GKL+ +DLAGSE + DK+ R E IN+SLL L I AL H+
Sbjct: 236 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHV 294
Query: 426 PFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
P+R SKLT +L+DS G +RT +I+ ISP+S + E T++TL YA R K++
Sbjct: 295 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 165/286 (57%), Gaps = 14/286 (4%)
Query: 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-----QP-- 253
+FVFDAV +E T EV+ T +PI+ + T AYG TG+GKT+TM +P
Sbjct: 73 KFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGV 132
Query: 254 LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVG 313
+ L H + + M ++ + VS+ E+Y ++ DLL + L +RED ++ V + G
Sbjct: 133 MYLTMLH-LYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHG 191
Query: 314 LQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLV 373
L ++ + + I L++ GN R+ T N SSRSHA+ Q+ +++ + +
Sbjct: 192 LTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRI 251
Query: 374 GKLSFIDLAGSERGADTTDNDKQTR-MEGAEINKSLLALKECIRALDNDQ---GHIPFRG 429
K+S IDLAGSER + T K TR +EG IN+SLLAL I AL + + HIP+R
Sbjct: 252 AKMSLIDLAGSERAS--TSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRN 309
Query: 430 SKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
SKLT +L+DS G+ +T+MI+ +SPSS + T NTL+YA+R K +
Sbjct: 310 SKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 169/322 (52%), Gaps = 42/322 (13%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP-------- 253
F FDAV + ++Y ETV P++ + T FAYGQTG+GKTYTMQ
Sbjct: 70 FTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELR 129
Query: 254 --LPLKASHDILRLMHQMHRSQGFQLYV--SFFEIYGGKVFDLLNDR--KKLCMREDGKQ 307
+P H + + RSQ Q V S+ EIY ++ DLL+ K+L ++E+ +
Sbjct: 130 GVIPNAFEH----IFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPET 185
Query: 308 QVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDS 367
V I L + NV I ++ GN TR+ G+T NE SSRSHAI + ++ S GSD
Sbjct: 186 GVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDG 245
Query: 368 KPARLVGKLSFIDLAGSER----------GADTTDNDKQTRM-------------EGAEI 404
+ VGKL+ +DLAGSER GA T + E ++I
Sbjct: 246 QDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKI 305
Query: 405 NKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTI 463
N SL AL I AL N HIP+R SKLT +L+DS G+++T+M++ + P+S S + ++
Sbjct: 306 NLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESL 365
Query: 464 NTLRYADRVKSLSKGNISKRDP 485
+TLR+A+R K++ DP
Sbjct: 366 STLRFANRAKNIKNKPRVNEDP 387
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 178/340 (52%), Gaps = 34/340 (10%)
Query: 151 IKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNE 210
IKVV R RPLN + S ++ ++ + + ++FD V
Sbjct: 13 IKVVCRFRPLNDSEE----------KAGSKFVVKFPNNVEENCIS-IAGKVYLFDKVFKP 61
Query: 211 DVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM---------QPLPLKASHD 261
+ + E+VY+E + IV + T FAYGQT SGKT+TM Q + + +D
Sbjct: 62 NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVND 121
Query: 262 ILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRK-KLCMREDGKQQVCIVGLQEYRVS 320
I ++ M + F + VS++EIY K+ DLL+ K L + ED + + G E VS
Sbjct: 122 IFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVS 181
Query: 321 NVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFID 380
+ + + E+IE+G + R T NE SSRSH++ + +K+ + K L GKL +D
Sbjct: 182 SPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKK---LSGKLYLVD 238
Query: 381 LAGSER----GADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFRGSKLTEV 435
LAGSE+ GA+ T D E INKSL AL I AL D ++ HIP+R SKLT +
Sbjct: 239 LAGSEKVSKTGAEGTVLD-----EAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRI 293
Query: 436 LRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
L++S G++RT ++ C SP+S + T +TL + R K++
Sbjct: 294 LQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTV 333
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 162/285 (56%), Gaps = 17/285 (5%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP------LP 255
F D V + + ++V+ E V+ +V FAYGQTG+GKTYTM+ +
Sbjct: 50 FELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGIN 108
Query: 256 LKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLND--RKKLCMR--EDGKQQVCI 311
+A + + + + + VS EIY + DLL ++KL +R DG Q+ +
Sbjct: 109 QRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYV 168
Query: 312 VGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD-SKPA 370
GL E++V +VD I ++ E G+ R+T T NE SSRSHA+L + ++ G D S
Sbjct: 169 PGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR----GVDCSTGL 224
Query: 371 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGS 430
R GKL+ +DLAGSER + + R E INKSL AL + I AL + QGH+PFR S
Sbjct: 225 RTTGKLNLVDLAGSERVGKSGAEGSRLR-EAQHINKSLSALGDVIAALRSRQGHVPFRNS 283
Query: 431 KLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
KLT +L+DS GDS+T+M+ +SP + T+ +L++A+RV+S+
Sbjct: 284 KLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 168/338 (49%), Gaps = 30/338 (8%)
Query: 149 AKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVL 208
IKV+ R RPLN + N + K + + T + + FD V
Sbjct: 7 CNIKVMCRFRPLN--------------ESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVF 52
Query: 209 NEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP----------LPLKA 258
+ E+VY++ + IV + T FAYGQT SGKT+TM+ +P +
Sbjct: 53 QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIP-RI 111
Query: 259 SHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLN-DRKKLCMREDGKQQVCIVGLQEY 317
DI ++ M + F + VS+FEIY K+ DLL+ + L + ED + + G E
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 318 RVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLS 377
V + D + + I++G + R T NE SSRSH+I + +K+ ++ K L GKL
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK---LSGKLY 228
Query: 378 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 437
+DLAGSE+ T + E INKSL AL I AL ++P+R SK+T +L+
Sbjct: 229 LVDLAGSEK-VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQ 287
Query: 438 DSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
DS G+ RT ++ C SPSS + T +TL + R K++
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 168/338 (49%), Gaps = 30/338 (8%)
Query: 149 AKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVL 208
IKV+ R RPLN + N + K + + T + + FD V
Sbjct: 7 CNIKVMCRFRPLN--------------ESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVF 52
Query: 209 NEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP----------LPLKA 258
+ E+VY++ + IV + T FAYGQT SGKT+TM+ +P +
Sbjct: 53 QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIP-RI 111
Query: 259 SHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLN-DRKKLCMREDGKQQVCIVGLQEY 317
DI ++ M + F + VS+FEIY K+ DLL+ + L + ED + + G E
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 318 RVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLS 377
V + D + + I++G + R T NE SSRSH+I + +K+ ++ K L GKL
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK---LSGKLY 228
Query: 378 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 437
+DLAGSE+ T + E INKSL AL I AL ++P+R SK+T +L+
Sbjct: 229 LVDLAGSEK-VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQ 287
Query: 438 DSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
DS G+ RT ++ C SPSS + T +TL + R K++
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 176/349 (50%), Gaps = 25/349 (7%)
Query: 149 AKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKL-KVDL----TEYVERHEFV 203
+K+KV VR RP+N + L T L K D + H F
Sbjct: 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFW 60
Query: 204 -FDAVLNEDVTNEEVYSETV-EPIVPLIFHRTKATCFAYGQTGSGKTYTM-----QP--L 254
D + E +++ + + E I+ F A FAYGQTGSGK+YTM QP +
Sbjct: 61 SMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLI 120
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLN---DRKKLCMREDGKQQVCI 311
P S R + + Q F++ VS+ EIY KV DLL+ R+ L +RE +
Sbjct: 121 PRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYV 180
Query: 312 VGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSA-DGSDSKPA 370
GL + V++ I L+ +GN +R+ T NEESSRSHA+ ++ + + D
Sbjct: 181 DGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG 240
Query: 371 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL------DNDQGH 424
VGKLS +DLAGSER T + + EG+ INKSL L I AL N
Sbjct: 241 EKVGKLSLVDLAGSERATKTGAAGDRLK-EGSNINKSLTTLGLVISALADQSAGKNKNKF 299
Query: 425 IPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473
+P+R S LT +L+DS G+S+T M++ +SP++ + + T++TLRYADR K
Sbjct: 300 VPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 175/350 (50%), Gaps = 38/350 (10%)
Query: 151 IKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNE 210
I+V VR RPLN +T H L LT+ +F FD
Sbjct: 25 IQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRH--TLDSKLTK-----KFTFDRSFGP 77
Query: 211 DVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP----------------- 253
+ +VYS V P++ + + T FAYGQTG+GKT+TM
Sbjct: 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIG 137
Query: 254 -LPLKASH--DILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLL--NDRKKLCMREDG--K 306
+P SH D LR+M + + +S+ E+Y ++ DLL +D K+ + +D K
Sbjct: 138 IIPRALSHLFDELRMMEVE-----YTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKK 192
Query: 307 QQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD 366
V I GL+E V + D + +L+EKG R T TT N +SSRSH + + + +G +
Sbjct: 193 GSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIE 252
Query: 367 SKPARLVGKLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHI 425
+ +GKL+ +DLAGSE N+K R+ E IN+SLL L I AL + H+
Sbjct: 253 GEDMLKIGKLNLVDLAGSE-NVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHV 311
Query: 426 PFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
P+R SKLT +L++S G ++T +I+ ISP E T++TL YA R K++
Sbjct: 312 PYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNI 361
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 167/338 (49%), Gaps = 30/338 (8%)
Query: 149 AKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVL 208
IKV+ R RPLN + N + K + + T + + FD V
Sbjct: 7 CNIKVMCRFRPLN--------------ESEVNRGDKYVAKFQGEDTVMIASKPYAFDRVF 52
Query: 209 NEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP----------LPLKA 258
+ E+VY++ + IV + T FAYGQT SGK +TM+ +P +
Sbjct: 53 QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIP-RI 111
Query: 259 SHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLN-DRKKLCMREDGKQQVCIVGLQEY 317
DI ++ M + F + VS+FEIY K+ DLL+ + L + ED + + G E
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 318 RVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLS 377
V + D + + I++G + R T NE SSRSH+I + +K+ ++ K L GKL
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK---LSGKLY 228
Query: 378 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 437
+DLAGSE+ T + E INKSL AL I AL ++P+R SK+T +L+
Sbjct: 229 LVDLAGSEK-VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQ 287
Query: 438 DSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
DS G+ RT ++ C SPSS + T +TL + R K++
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 156/288 (54%), Gaps = 20/288 (6%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPLK---A 258
F FD V + +++ +++P V I + T FAYGQTG+GK+YTM +
Sbjct: 49 FTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG 108
Query: 259 SHDILRLMHQMHRSQ-------GFQLYVSFFEIYGGKVFDLL---NDRKKLCMREDGKQQ 308
I R++ Q+ S + + VS+ EIY ++ DLL ND L + E+ +
Sbjct: 109 RGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQND--NLPVHEEKNRG 166
Query: 309 VCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSK 368
V + GL E VS+V + E++ +G R+ T N+ESSRSH+I + I + + S
Sbjct: 167 VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSA 226
Query: 369 PARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPF 427
+ G+L +DLAGSE+ T QT E +INKSL AL I AL D H+P+
Sbjct: 227 KS---GQLFLVDLAGSEK-VGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPY 282
Query: 428 RGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
R SKLT +L++S G+SRT +I SPSS + T++TLR+ R KS+
Sbjct: 283 RDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSI 330
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 173/337 (51%), Gaps = 24/337 (7%)
Query: 149 AKIKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVL 208
KI+V R RPLN + TV E K D +R + ++D V
Sbjct: 13 GKIRVYCRIRPLNEKESSEREKQMLTT---VDEFTV-EHPWKDD-----KRKQHIYDRVF 63
Query: 209 NEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDI 262
+ + ++++ +T + +V FAYGQTGSGKT+T+ L +A+ ++
Sbjct: 64 DMRASQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKEL 122
Query: 263 LRLMHQMHRSQGFQLYVSFFEIYGGKVFDLL----NDRKKLCMREDGKQQVCIVGLQEYR 318
++ + + F L E+Y + DLL R KL +++D K V + +
Sbjct: 123 FNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIP 182
Query: 319 VSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSF 378
+S ++ +R ++E+G+ R T NEESSRSH IL + I+ S D AR GKLSF
Sbjct: 183 ISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIE-SIDLQTQSAAR--GKLSF 239
Query: 379 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRD 438
+DLAGSER + Q + E INKSL AL + I AL + HIP+R KLT ++ D
Sbjct: 240 VDLAGSERVKKSGSAGNQLK-EAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSD 298
Query: 439 SFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
S G+++T+M +SP+ + + T N+L YA RV+++
Sbjct: 299 SLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 156/285 (54%), Gaps = 15/285 (5%)
Query: 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP------L 254
+ ++D V + + T ++V+ +T + +V FAYGQTGSGKT+T+ L
Sbjct: 48 QHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGL 106
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLL----NDRKKLCMREDGKQQVC 310
+A ++ R+M + F L E+Y + DLL R KL +++D K V
Sbjct: 107 TPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVS 166
Query: 311 IVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPA 370
+ + +S + ++ +I++G+ R T T NE+SSRSH I+ + I+ S + A
Sbjct: 167 VENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIE-STNLQTQAIA 225
Query: 371 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGS 430
R GKLSF+DLAGSER + Q + E INKSL AL + I AL + HIP+R
Sbjct: 226 R--GKLSFVDLAGSERVKKSGSAGNQLK-EAQSINKSLSALGDVISALSSGNQHIPYRNH 282
Query: 431 KLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
KLT ++ DS G+++T+M ISP+ + + T N+L YA RV+S+
Sbjct: 283 KLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSI 327
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 30/294 (10%)
Query: 210 EDV---TNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPLKASHDIL--- 263
ED+ + ++VY + E ++ F FAYGQTG+GK+YTM K I+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 122
Query: 264 ------RLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKK--LCMREDGKQQVCIVGLQ 315
R+ + + + + VS+ EIY +V DLLN + K L +RE + L
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLS 182
Query: 316 EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAI-KRSADGSDSKPARLVG 374
+ V++ + I++L++ GN R+ T NE SSRSHA+ + ++ D + V
Sbjct: 183 KLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242
Query: 375 KLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRAL-DNDQG--------- 423
K+S +DLAGSER AD+T K TR+ EGA INKSL L + I AL + D G
Sbjct: 243 KISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 424 --HIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
IP+R S LT +LR++ G+SRT M++ +SP+ + + T++TLRYADR K +
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 30/294 (10%)
Query: 210 EDV---TNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPLKASHDIL--- 263
ED+ + ++VY + E ++ F FAYGQTG+GK+YTM K I+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 122
Query: 264 ------RLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKK--LCMREDGKQQVCIVGLQ 315
R+ + + + + VS+ EIY +V DLLN + K L +RE + L
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLS 182
Query: 316 EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAI-KRSADGSDSKPARLVG 374
+ V++ + I++L++ GN R+ T NE SSRSHA+ + ++ D + V
Sbjct: 183 KLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242
Query: 375 KLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRAL-DNDQG--------- 423
K+S +DLAGSER AD+T K TR+ EGA INKSL L + I AL + D G
Sbjct: 243 KISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 424 --HIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
IP+R S LT +LR++ G+SRT M++ +SP+ + + T++TLRYADR K +
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 30/294 (10%)
Query: 210 EDV---TNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPLKASHDIL--- 263
ED+ + ++VY + E ++ F FAYGQTG+GK+YTM K I+
Sbjct: 79 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 138
Query: 264 ------RLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKK--LCMREDGKQQVCIVGLQ 315
R+ + + + + VS+ EIY +V DLLN + K L +RE + L
Sbjct: 139 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLS 198
Query: 316 EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAI-KRSADGSDSKPARLVG 374
+ V++ + I++L++ GN R+ T NE SSRSHA+ + ++ D + V
Sbjct: 199 KLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 258
Query: 375 KLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRAL-DNDQG--------- 423
K+S +DLAGSER AD+T K TR+ EGA INKSL L + I AL + D G
Sbjct: 259 KISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 316
Query: 424 --HIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
IP+R S LT +LR++ G+SRT M++ +SP+ + + T++TLRYADR K +
Sbjct: 317 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 169/339 (49%), Gaps = 30/339 (8%)
Query: 151 IKVVVRKRPLNXXXXXXXXXXXXXXQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNE 210
+ V VR RPLN + +N + +VD ++ F FD V +
Sbjct: 6 VAVCVRVRPLNSREESLGETAQVYWKTDNNVI------YQVDGSK-----SFNFDRVFHG 54
Query: 211 DVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP-------LPLKASHDIL 263
+ T + VY E PI+ T FAYGQT SGKTYTM +P +A HDI
Sbjct: 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIP-RAIHDIF 113
Query: 264 RLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKK---LCMREDGKQQVCIVGLQEYRVS 320
+ + + + F L VS+ EIY + DLL +K L +RED + V + L E V
Sbjct: 114 QKIKKFPDRE-FLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVY 172
Query: 321 NVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADG--SDSKPARLVGKLSF 378
+ + I KG +R G T N+ SSRSH I ++ ++ G S+ + + V L+
Sbjct: 173 TSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNL 232
Query: 379 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVL 436
+DLAGSER A T + + EG IN+SL L + I+ L + Q G I +R SKLT +L
Sbjct: 233 VDLAGSERAAQTGAAGVRLK-EGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRIL 291
Query: 437 RDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
++S G+++T +I I+P S + T+ L++A K +
Sbjct: 292 QNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYM 328
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 30/294 (10%)
Query: 210 EDV---TNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPLKASHDIL--- 263
ED+ + ++VY + E ++ F FAYGQTG+GK+YTM K I+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 122
Query: 264 ------RLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKK--LCMREDGKQQVCIVGLQ 315
R+ + + + + VS+ EIY +V DLLN + K L +RE + L
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLS 182
Query: 316 EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAI-KRSADGSDSKPARLVG 374
+ V++ + I++L++ GN R+ T NE SSRSHA+ + ++ D + V
Sbjct: 183 KLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242
Query: 375 KLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRAL-DNDQG--------- 423
K+S +DLAGSER AD+T K TR+ EGA INKSL L + I AL + D G
Sbjct: 243 KISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 424 --HIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
IP+R S LT +LR++ G+SRT M++ +SP+ + + T++TLRYADR K +
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 156/292 (53%), Gaps = 26/292 (8%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-QP----LPL 256
F FD + ++ TN+E++ E V ++ FAYGQTGSGKTYTM P +P
Sbjct: 76 FKFDKIFDQQETNDEIFKE-VGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPA 134
Query: 257 KASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLL---------NDRK---KLCMRED 304
+H + R +++ F EIY + DLL NDR K +R D
Sbjct: 135 TINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHD 194
Query: 305 GKQQVC-IVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSAD 363
+ + I + + + DT+ +++++ N RST +T ANE SSRSH+I + ++ +
Sbjct: 195 QELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNE 254
Query: 364 GSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG 423
G+ K G L+ +DLAGSER + ++ R E INKSL L + I AL++ G
Sbjct: 255 GTGEKSQ---GILNLVDLAGSERLNSSMVVGERLR-ETQSINKSLSCLGDVIHALNSPDG 310
Query: 424 ---HIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRV 472
HIPFR SKLT +L+ S +G S+T+M ISP++ TIN+LR+A +V
Sbjct: 311 QKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKV 362
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 164/297 (55%), Gaps = 30/297 (10%)
Query: 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-QP----L 254
HEF FD + ++ TN +V+ E V +V FAYGQTGSGKT+TM P +
Sbjct: 108 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGII 166
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVS--FFEIYGGKVFDLL---NDRK-------KLCMR 302
P SH I ++++ +++G+ V+ F EIY + DLL N+ K K +R
Sbjct: 167 PSTISH-IFNWINKL-KTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 224
Query: 303 EDGKQQVCIVGLQ-EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRS 361
D + + + ++ + + + +++K N RST +T +NE SSRSH+I + +
Sbjct: 225 HDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL--- 281
Query: 362 ADGSDSKP-ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-- 418
GS++K A G L+ +DLAGSER + + R E INKSL AL + I AL
Sbjct: 282 -SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSALGDVIHALGQ 339
Query: 419 -DNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
D+ + HIPFR SKLT +L+ S GDS+T+M ISPSS T+N+LR+A +V S
Sbjct: 340 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 396
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 151/298 (50%), Gaps = 30/298 (10%)
Query: 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-----QPL 254
+ F FD + TN+E++ E + +V FAYGQTGSGKTYTM +
Sbjct: 53 YNFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMI 111
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRK------------KLCMR 302
P+ SH + R +++ + EIY + DLL D K K +R
Sbjct: 112 PMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIR 171
Query: 303 EDG-KQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAI--K 359
D KQ I + ++++ + +++K + RST T +NE SSRSH++ + I +
Sbjct: 172 HDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGR 231
Query: 360 RSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALD 419
G S+ GKL+ +DLAGSER + ++ R E INKSL L + I AL+
Sbjct: 232 NLHTGETSQ-----GKLNLVDLAGSERINSSAVTGERLR-ETQNINKSLSCLGDVIYALN 285
Query: 420 N-DQG--HIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
D G +IPFR SKLT +L+ S VGDS+T+M I P T+N+LR+A +V S
Sbjct: 286 TPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNS 343
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 163/297 (54%), Gaps = 30/297 (10%)
Query: 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-QP----L 254
HEF FD + ++ TN +V+ E V +V FAYGQTGSGKT+TM P +
Sbjct: 51 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 109
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVS--FFEIYGGKVFDLL---NDRK-------KLCMR 302
P SH I ++++ +++G+ V+ F EIY + DLL N+ K K +R
Sbjct: 110 PSTISH-IFNWINKL-KTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 167
Query: 303 EDGKQQVCIVGLQ-EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRS 361
D + + + ++ + + + +++K N RST +T +NE SSRSH+I + +
Sbjct: 168 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS-- 225
Query: 362 ADGSDSKP-ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-- 418
GS++K A G L+ +DLAGSER + + R E INKSL L + I AL
Sbjct: 226 --GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQ 282
Query: 419 -DNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
D+ + HIPFR SKLT +L+ S GDS+T+M ISPSS T+N+LR+A +V S
Sbjct: 283 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 339
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 163/297 (54%), Gaps = 30/297 (10%)
Query: 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-QP----L 254
HEF FD + ++ TN +V+ E V +V FAYGQTGSGKT+TM P +
Sbjct: 63 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 121
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVS--FFEIYGGKVFDLL---NDRK-------KLCMR 302
P SH I ++++ +++G+ V+ F EIY + DLL N+ K K +R
Sbjct: 122 PSTISH-IFNWINKL-KTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 179
Query: 303 EDGKQQVCIVGLQ-EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRS 361
D + + + ++ + + + +++K N RST +T +NE SSRSH+I + +
Sbjct: 180 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS-- 237
Query: 362 ADGSDSKP-ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-- 418
GS++K A G L+ +DLAGSER + + R E INKSL L + I AL
Sbjct: 238 --GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQ 294
Query: 419 -DNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
D+ + HIPFR SKLT +L+ S GDS+T+M ISPSS T+N+LR+A +V S
Sbjct: 295 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 351
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 152/285 (53%), Gaps = 23/285 (8%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLP-----L 256
F FD V + + +++ E V P++ FAYGQTGSGKTYTM +P +
Sbjct: 108 FSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVI 166
Query: 257 KASHDILRLMHQMHRSQG--FQLYVSFFEIYGGKVFDLLNDRKK---LCMREDGKQQVCI 311
+ D+L + +R+ G +++ +F EIY ++DLL++ +K + M ++ K + +
Sbjct: 167 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYV 226
Query: 312 VGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQL-AIKRSADGSDSKPA 370
+ E V + + +R L+ R+T +T NE SSRSHA+ +L I R A+ +
Sbjct: 227 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS-- 284
Query: 371 RLVGKLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRG 429
VG ++ +DLAGSE +T RM E IN+SL L I AL Q HIP+R
Sbjct: 285 --VGSINLVDLAGSESPKTST------RMTETKNINRSLSELTNVILALLQKQDHIPYRN 336
Query: 430 SKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
SKLT +L S G+S+T+M +SP + ++ +LR+A V S
Sbjct: 337 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 381
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 152/285 (53%), Gaps = 23/285 (8%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLP-----L 256
F FD V + + +++ E V P++ FAYGQTGSGKTYTM +P +
Sbjct: 102 FSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVI 160
Query: 257 KASHDILRLMHQMHRSQG--FQLYVSFFEIYGGKVFDLLNDRKK---LCMREDGKQQVCI 311
+ D+L + +R+ G +++ +F EIY ++DLL++ +K + M ++ K + +
Sbjct: 161 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYV 220
Query: 312 VGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQL-AIKRSADGSDSKPA 370
+ E V + + +R L+ R+T +T NE SSRSHA+ +L I R A+ +
Sbjct: 221 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS-- 278
Query: 371 RLVGKLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRG 429
VG ++ +DLAGSE +T RM E IN+SL L I AL Q HIP+R
Sbjct: 279 --VGSINLVDLAGSESPKTST------RMTETKNINRSLSELTNVILALLQKQDHIPYRN 330
Query: 430 SKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
SKLT +L S G+S+T+M +SP + ++ +LR+A V S
Sbjct: 331 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 375
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 152/285 (53%), Gaps = 23/285 (8%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLP-----L 256
F FD V + + +++ E V P++ FAYGQTGSGKTYTM +P +
Sbjct: 116 FSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVI 174
Query: 257 KASHDILRLMHQMHRSQG--FQLYVSFFEIYGGKVFDLLNDRKK---LCMREDGKQQVCI 311
+ D+L + +R+ G +++ +F EIY ++DLL++ +K + M ++ K + +
Sbjct: 175 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYV 234
Query: 312 VGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLA-IKRSADGSDSKPA 370
+ E V + + +R L+ R+T +T NE SSRSHA+ +L I R A+ +
Sbjct: 235 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS-- 292
Query: 371 RLVGKLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRG 429
VG ++ +DLAGSE +T RM E IN+SL L I AL Q HIP+R
Sbjct: 293 --VGSINLVDLAGSESPKTST------RMTETKNINRSLSELTNVILALLQKQDHIPYRN 344
Query: 430 SKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
SKLT +L S G+S+T+M +SP + ++ +LR+A V S
Sbjct: 345 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 389
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 162/297 (54%), Gaps = 30/297 (10%)
Query: 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-QP----L 254
HEF FD + ++ TN +V+ E V +V FAYGQTGSGKT+TM P +
Sbjct: 52 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 110
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVS--FFEIYGGKVFDLL---NDRK-------KLCMR 302
P SH I ++++ +++G+ V+ F EIY + DLL N+ K K +R
Sbjct: 111 PSTISH-IFNWINKL-KTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 303 EDGKQQVCIVGLQ-EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRS 361
D + + + ++ + + + +++K N RST +T +NE SSRSH+I + +
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS-- 226
Query: 362 ADGSDSKP-ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-- 418
GS++K A G L+ +DLAGS R + + R E INKSL L + I AL
Sbjct: 227 --GSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQ 283
Query: 419 -DNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
D+ + HIPFR SKLT +L+ S GDS+T+M ISPSS T+N+LR+A +V S
Sbjct: 284 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 162/297 (54%), Gaps = 30/297 (10%)
Query: 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-QP----L 254
HEF FD + ++ TN +V+ E V +V FAYGQTGSGKT+TM P +
Sbjct: 52 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 110
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVS--FFEIYGGKVFDLL---NDRK-------KLCMR 302
P SH I ++++ +++G+ V+ F EIY + DLL N+ K K +R
Sbjct: 111 PSTISH-IFNWINKL-KTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 303 EDGKQQVCIVGLQ-EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRS 361
D + + + ++ + + + +++K N RST +T +NE SS SH+I + +
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLS-- 226
Query: 362 ADGSDSKP-ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-- 418
GS++K A G L+ +DLAGSER + + R E INKSL L + I AL
Sbjct: 227 --GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQ 283
Query: 419 -DNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
D+ + HIPFR SKLT +L+ S GDS+T+M ISPSS T+N+LR+A +V S
Sbjct: 284 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 162/297 (54%), Gaps = 30/297 (10%)
Query: 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-QP----L 254
HEF FD + ++ TN +V+ E V +V FAYGQTGSGKT+TM P +
Sbjct: 52 HEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGII 110
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVS--FFEIYGGKVFDLL---NDRK-------KLCMR 302
P SH I ++++ +++G+ V+ F EIY + DLL N+ K K +R
Sbjct: 111 PSTISH-IFNWINKL-KTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 303 EDGKQQVCIVGLQ-EYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRS 361
D + + + ++ + + + +++K N RST +T +NE SSRSH+I + +
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS-- 226
Query: 362 ADGSDSKP-ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-- 418
GS++K A G L+ +DLAGSER + + R E I KSL L + I AL
Sbjct: 227 --GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNIKKSLSCLGDVIHALGQ 283
Query: 419 -DNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
D+ + HIPFR SKLT +L+ S GDS+T+M ISPSS T+N+LR+A +V S
Sbjct: 284 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 152/285 (53%), Gaps = 23/285 (8%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLP-----L 256
F FD V + + +++ E V P++ FAYGQ+GSGKTYTM +P +
Sbjct: 105 FSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVI 163
Query: 257 KASHDILRLMHQMHRSQG--FQLYVSFFEIYGGKVFDLLNDRKK---LCMREDGKQQVCI 311
+ D+L + +R+ G +++ +F EIY ++DLL++ +K + M ++ K + +
Sbjct: 164 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYV 223
Query: 312 VGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQL-AIKRSADGSDSKPA 370
+ E V + + +R L+ R+T +T NE SSRSHA+ +L I R A+ +
Sbjct: 224 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS-- 281
Query: 371 RLVGKLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRG 429
VG ++ +DLAGSE +T RM E IN+SL L I AL Q HIP+R
Sbjct: 282 --VGSINLVDLAGSESPKTST------RMTETKNINRSLSELTNVILALLQKQDHIPYRN 333
Query: 430 SKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
SKLT +L S G+S+T+M +SP + ++ +LR+A V S
Sbjct: 334 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 378
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 151/285 (52%), Gaps = 23/285 (8%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLP-----L 256
F FD V + + +++ E V P++ FAYGQTGSGKTYTM +P +
Sbjct: 105 FSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVI 163
Query: 257 KASHDILRLMHQMHRSQG--FQLYVSFFEIYGGKVFDLLNDRKK---LCMREDGKQQVCI 311
+ D+L + +R+ G +++ +F EIY ++DLL++ +K + M ++ K + +
Sbjct: 164 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYV 223
Query: 312 VGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQL-AIKRSADGSDSKPA 370
+ E V + + +R L+ R+T +T NE SSRSHA+ +L I R A+ +
Sbjct: 224 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS-- 281
Query: 371 RLVGKLSFIDLAGSERGADTTDNDKQTRM-EGAEINKSLLALKECIRALDNDQGHIPFRG 429
VG ++ +DLAGSE +T RM E I +SL L I AL Q HIP+R
Sbjct: 282 --VGSINLVDLAGSESPKTST------RMTETKNIKRSLSELTNVILALLQKQDHIPYRN 333
Query: 430 SKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
SKLT +L S G+S+T+M +SP + ++ +LR+A V S
Sbjct: 334 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 378
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 153/289 (52%), Gaps = 15/289 (5%)
Query: 198 ERHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM-----Q 252
E ++ FDA E T +++Y+ +V+PI+ + A+ AYG TG+GKT+TM Q
Sbjct: 63 ETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQ 122
Query: 253 P--LPLKASHDILRLMHQMH---RSQGFQLYVSFFEIYGGKVFDLLNDRKK-LCMREDGK 306
P +P +A D+L+L + R + +S+ EIY KV DLL+ L +RED +
Sbjct: 123 PGVIP-RALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCR 181
Query: 307 QQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD 366
+ I GL + +S+ + R+ G T N+ SSRSHA+L + + + +
Sbjct: 182 GNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP 241
Query: 367 SKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIP 426
+ + GKL IDLAGSE T + + + GA IN SL L + + AL+ +P
Sbjct: 242 FR--QREGKLYLIDLAGSEDNRRTGNKGLRLKESGA-INTSLFVLGKVVDALNQGLPRVP 298
Query: 427 FRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
+R SKLT +L+DS G + +++I+ I+P T++ L +A R K +
Sbjct: 299 YRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 137/293 (46%), Gaps = 29/293 (9%)
Query: 197 VERHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPL 256
V+++EF FD ++ +E+Y + P+V + + T AYGQTG+GK+Y+M P
Sbjct: 58 VDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPP 117
Query: 257 ------------KASHDILRLM--HQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMR 302
+A DI + Q + Q+Y SF EIY K FDLL + M
Sbjct: 118 GEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMV 177
Query: 303 EDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSA 362
Q+ + L S D + ++E G R T N SSRSHAI+ + +K
Sbjct: 178 AARCQRCTCLPLH----SQAD-LHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT 232
Query: 363 DGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ 422
S +++ +DLAGSE G T ++ R EG IN LL++ + + ++
Sbjct: 233 HHS---------RMNIVDLAGSE-GVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH 282
Query: 423 GHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475
IP+R S LT VL+ S S ++CISP T++TLR+ K L
Sbjct: 283 TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 137/292 (46%), Gaps = 29/292 (9%)
Query: 197 VERHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPL 256
V+++EF FD ++ +E+Y + P+V + + T AYGQTG+GK+Y+M P
Sbjct: 58 VDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPP 117
Query: 257 ------------KASHDILRLM--HQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMR 302
+A DI + Q + Q+Y SF EIY K FDLL + M
Sbjct: 118 GEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMV 177
Query: 303 EDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSA 362
Q+ + L S D + ++E G R T N SSRSHAI+ + +K
Sbjct: 178 AARCQRCTCLPLH----SQAD-LHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT 232
Query: 363 DGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ 422
S +++ +DLAGSE G T ++ R EG IN LL++ + + ++
Sbjct: 233 HHS---------RMNIVDLAGSE-GVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH 282
Query: 423 GHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKS 474
IP+R S LT VL+ S S ++CISP T++TLR+ K+
Sbjct: 283 TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKA 334
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 145/284 (51%), Gaps = 20/284 (7%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ-------PL 254
F+FD + + +N+ V+ E + ++ T FAYGQTGSGKT+TM PL
Sbjct: 432 FLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPL 490
Query: 255 PLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR-----KKLCMREDGKQQV 309
LK + + + + + + + F EIY + DLLN + K +D +
Sbjct: 491 SLKKIFNDIEELKE--KGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKT 548
Query: 310 CIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKP 369
+ + + + + ++ + N RST T +N+ SSRSH+I I S +K
Sbjct: 549 TVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIF--IIDLQGYNSLTKE 606
Query: 370 ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALD-NDQGHIPFR 428
+ G L+ IDLAGSER ++ + + E INKSL L + I +L+ D H+P+R
Sbjct: 607 SSY-GTLNLIDLAGSERLNNSRAEGDRLK-ETQAINKSLSCLGDVIHSLNLKDGSHVPYR 664
Query: 429 GSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRV 472
SKLT +L+ S G+S+T+M ISP + TIN+LR+A +V
Sbjct: 665 NSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKV 708
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 161/343 (46%), Gaps = 57/343 (16%)
Query: 197 VERHEFVFDAVL----NED---VTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTY 249
+E F FD ED T E VY E + F FAYGQTGSGK+Y
Sbjct: 93 LEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSY 152
Query: 250 TMQPLP------LKASHDILRLMHQMHRSQ---GFQLYVSFFEIYGGKVFDLL------N 294
TM P + D+ + + + + VS+FE+Y V DLL
Sbjct: 153 TMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNK 212
Query: 295 DRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAIL 354
L +RE + + L E V ++ I + G+ +R+ +T N+ SSRSHA+
Sbjct: 213 PPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVF 272
Query: 355 QLAIKR-----SADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLL 409
+ +K+ D + + +R+ +DLAGSER A +T+ Q EG+ INKSL
Sbjct: 273 TIMLKQIHHDLETDDTTERSSRI----RLVDLAGSER-AKSTEATGQRLREGSNINKSLT 327
Query: 410 ALKECIRALDNDQGH----------------------IPFRGSKLTEVLRDSFVGDSRTV 447
L I AL + + +P+R S LT +L+DS G+S+T
Sbjct: 328 TLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTA 387
Query: 448 MISCISPSSGSCEHTINTLRYADRVKSL-SKGNISKRDPLSSS 489
MI+CISP+ + T++TLRYAD+ K + ++ +++ D +S++
Sbjct: 388 MIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAA 428
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 20/288 (6%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPLKASH- 260
F D VL+ D + + VY + +V T YGQTG+GKTYTM H
Sbjct: 74 FKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 132
Query: 261 DIL-RLMHQMHR------SQGFQLYVSFFEIYGGKVFDLLN-------DRKKLCMREDGK 306
IL R + Q+ R + + VS+ EIY +FDLL+ + + E+
Sbjct: 133 GILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVEN-P 191
Query: 307 QQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD 366
Q V I GL + S + L+ +G R + N+ SSRSH I + ++ + +
Sbjct: 192 QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR-TL 250
Query: 367 SKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHI 425
S+ + K++ +DLAGSER + ++ Q E INKSL L++ I AL D + HI
Sbjct: 251 SEEKYITSKINLVDLAGSER-LGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHI 309
Query: 426 PFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473
PFR KLT L+DS G+ V+++ I + E T+++LR+A R+K
Sbjct: 310 PFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 140/297 (47%), Gaps = 28/297 (9%)
Query: 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLP--- 255
RH+F FD V +EV+ E + +V FAYGQTGSGKT+TM+ P
Sbjct: 82 RHDFSFDRVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD 140
Query: 256 -------LKASHDILRLMHQMHRSQG--FQLYVSFFEIYGGKVFDLL--NDRK------K 298
+A + + ++ QG + S+ EIY V DLL RK +
Sbjct: 141 PQLEGLIPRALRHLFSVAQELS-GQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECE 199
Query: 299 LCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAI 358
+ G +++ + + VS + L+ R+ T NE SSRSH++ QL I
Sbjct: 200 IRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI 259
Query: 359 KRSADGSDSKPARLVGKLSFIDLAGSER---GADTTDNDKQTRMEGAEINKSLLALKECI 415
S+ + LS +DLAGSER G +++ E IN SL L I
Sbjct: 260 SGE---HSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVI 316
Query: 416 RALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRV 472
AL N + H+P+R SKLT +L++S G ++ +M ISP + ++N+LR+A +V
Sbjct: 317 MALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP-------- 253
+VFD VL + T E+VY+ + IV + T FAYGQT SGKT+TM+
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLM 105
Query: 254 --LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLN-DRKKLCMREDGKQQVC 310
+P + +HDI ++ M + F + VS+FEIY K+ DLL+ + L + ED +
Sbjct: 106 GIIP-RIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPY 164
Query: 311 IVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPA 370
+ G E VS+ + + ++I++G A R T NE SSRSH+I + IK+ ++ K
Sbjct: 165 VKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKK-- 222
Query: 371 RLVGKLSFIDLAGSER 386
L GKL +DLAGSE+
Sbjct: 223 -LSGKLYLVDLAGSEK 237
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 404 INKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHT 462
INKSL AL I AL + + H+P+R SK+T +L+DS G+ RT ++ C SPS + T
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 463 INTLRYADRVKSL 475
+TL + R K++
Sbjct: 64 KSTLMFGQRAKTI 76
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 405 NKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTI 463
NKSL AL I AL + + H+P+R SK+T +L+DS G+ RT ++ C SPS + T
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 464 NTLRYADRVKSL 475
+TL + R K++
Sbjct: 61 STLMFGQRAKTI 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,240,251
Number of Sequences: 62578
Number of extensions: 747865
Number of successful extensions: 1528
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 64
length of query: 716
length of database: 14,973,337
effective HSP length: 106
effective length of query: 610
effective length of database: 8,340,069
effective search space: 5087442090
effective search space used: 5087442090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)