Query 042351
Match_columns 716
No_of_seqs 354 out of 1799
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0246 Kinesin-like protein [ 100.0 4.7E-98 1E-102 812.2 38.2 455 145-711 204-673 (676)
2 KOG4280 Kinesin-like protein [ 100.0 8.2E-81 1.8E-85 696.3 25.5 336 147-487 3-348 (574)
3 KOG0243 Kinesin-like protein [ 100.0 2.6E-78 5.7E-83 701.0 35.9 336 141-484 41-399 (1041)
4 cd01370 KISc_KIP3_like Kinesin 100.0 8.9E-77 1.9E-81 643.2 35.3 323 150-475 1-338 (338)
5 KOG0245 Kinesin-like protein [ 100.0 3.9E-78 8.5E-83 687.1 19.2 332 148-488 3-361 (1221)
6 cd01367 KISc_KIF2_like Kinesin 100.0 8.2E-76 1.8E-80 631.8 34.3 316 149-473 1-322 (322)
7 cd01373 KISc_KLP2_like Kinesin 100.0 5.2E-75 1.1E-79 629.2 35.1 314 149-475 1-337 (337)
8 cd01368 KISc_KIF23_like Kinesi 100.0 7.6E-75 1.6E-79 629.7 35.7 317 149-473 1-345 (345)
9 KOG0240 Kinesin (SMY1 subfamil 100.0 1E-75 2.2E-80 640.1 22.6 324 147-483 5-339 (607)
10 PLN03188 kinesin-12 family pro 100.0 4.4E-74 9.6E-79 671.1 37.4 321 146-484 95-443 (1320)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 4.1E-73 9E-78 618.6 37.0 328 149-481 1-355 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.2E-72 2.5E-77 614.2 37.1 328 149-484 2-352 (352)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1.5E-72 3.3E-77 609.0 36.8 321 149-475 1-333 (333)
14 KOG0242 Kinesin-like protein [ 100.0 6.8E-74 1.5E-78 661.9 26.0 327 148-484 5-340 (675)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 1.7E-71 3.6E-76 598.0 34.8 312 150-475 1-321 (321)
16 cd01372 KISc_KIF4 Kinesin moto 100.0 3.3E-71 7.1E-76 600.2 35.3 314 150-476 2-341 (341)
17 cd01375 KISc_KIF9_like Kinesin 100.0 4.7E-71 1E-75 597.7 35.7 315 150-473 1-334 (334)
18 cd01369 KISc_KHC_KIF5 Kinesin 100.0 7E-71 1.5E-75 594.1 36.6 313 149-475 2-325 (325)
19 cd01376 KISc_KID_like Kinesin 100.0 1.7E-70 3.8E-75 589.8 35.7 308 150-473 1-319 (319)
20 KOG0241 Kinesin-like protein [ 100.0 2.6E-71 5.5E-76 620.2 23.4 339 148-489 3-365 (1714)
21 cd01366 KISc_C_terminal Kinesi 100.0 3.6E-69 7.8E-74 581.6 36.9 317 148-478 1-329 (329)
22 cd00106 KISc Kinesin motor dom 100.0 1.4E-66 3.1E-71 560.5 36.4 316 150-473 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 1.4E-66 3.1E-71 562.3 36.5 324 150-481 1-334 (335)
24 KOG0239 Kinesin (KAR3 subfamil 100.0 3E-68 6.4E-73 613.1 23.4 332 145-486 310-651 (670)
25 PF00225 Kinesin: Kinesin moto 100.0 1.9E-67 4.2E-72 568.7 25.1 316 156-475 1-335 (335)
26 KOG0247 Kinesin-like protein [ 100.0 1.5E-62 3.2E-67 548.0 31.0 327 147-479 29-440 (809)
27 KOG0244 Kinesin-like protein [ 100.0 6.1E-61 1.3E-65 548.9 12.5 313 157-486 1-328 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.3E-56 2.9E-61 513.2 25.3 318 145-483 18-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1E-45 2.2E-50 368.7 19.2 173 217-454 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.3 8.2E-07 1.8E-11 103.3 -14.7 254 145-419 301-566 (568)
31 COG0556 UvrB Helicase subunit 95.9 0.013 2.8E-07 66.7 6.0 85 201-290 4-101 (663)
32 KOG0246 Kinesin-like protein [ 93.0 0.11 2.4E-06 59.6 4.7 37 629-666 640-676 (676)
33 PF00308 Bac_DnaA: Bacterial d 90.6 0.096 2.1E-06 54.0 0.8 49 201-252 4-52 (219)
34 COG2805 PilT Tfp pilus assembl 89.6 0.18 4E-06 54.3 1.9 31 222-252 113-143 (353)
35 PRK06893 DNA replication initi 87.5 0.35 7.5E-06 50.1 2.3 48 200-253 11-58 (229)
36 PRK06620 hypothetical protein; 87.3 0.27 5.7E-06 50.7 1.3 50 199-252 10-62 (214)
37 PRK14086 dnaA chromosomal repl 86.4 0.3 6.4E-06 57.7 1.1 51 200-253 283-333 (617)
38 PRK08084 DNA replication initi 84.3 0.62 1.3E-05 48.5 2.2 48 200-253 17-64 (235)
39 PRK12377 putative replication 83.9 0.6 1.3E-05 49.3 2.0 49 202-252 71-119 (248)
40 PRK08116 hypothetical protein; 83.3 0.57 1.2E-05 49.9 1.5 50 201-252 81-132 (268)
41 PRK09087 hypothetical protein; 83.2 0.53 1.2E-05 48.8 1.2 47 200-252 16-62 (226)
42 PRK05642 DNA replication initi 82.4 0.78 1.7E-05 47.7 2.1 46 200-252 14-63 (234)
43 COG1474 CDC6 Cdc6-related prot 82.1 2 4.3E-05 48.0 5.2 50 226-284 33-83 (366)
44 TIGR02928 orc1/cdc6 family rep 81.2 0.92 2E-05 49.7 2.2 48 204-252 10-58 (365)
45 PRK14088 dnaA chromosomal repl 81.1 0.71 1.5E-05 52.7 1.3 50 199-252 99-148 (440)
46 COG2804 PulE Type II secretory 80.9 0.8 1.7E-05 52.6 1.6 30 223-252 247-276 (500)
47 TIGR00631 uvrb excinuclease AB 80.8 1.1 2.4E-05 53.6 2.9 84 202-290 2-98 (655)
48 TIGR00362 DnaA chromosomal rep 80.7 0.76 1.7E-05 51.6 1.4 50 200-252 105-154 (405)
49 PRK06526 transposase; Provisio 80.6 0.59 1.3E-05 49.4 0.5 19 236-254 100-118 (254)
50 TIGR03420 DnaA_homol_Hda DnaA 80.6 1 2.2E-05 45.7 2.2 47 200-252 10-56 (226)
51 PRK00149 dnaA chromosomal repl 79.6 0.9 1.9E-05 51.9 1.5 50 200-252 117-166 (450)
52 PRK07952 DNA replication prote 79.4 0.97 2.1E-05 47.6 1.6 50 201-252 68-117 (244)
53 cd00009 AAA The AAA+ (ATPases 79.3 1.1 2.3E-05 40.7 1.7 28 225-252 10-37 (151)
54 PRK14087 dnaA chromosomal repl 79.3 0.95 2.1E-05 51.8 1.6 49 201-252 111-159 (450)
55 PRK08903 DnaA regulatory inact 79.1 1.3 2.8E-05 45.4 2.3 49 199-252 12-60 (227)
56 PF04851 ResIII: Type III rest 78.3 0.9 1.9E-05 43.8 0.9 31 223-253 13-44 (184)
57 smart00053 DYNc Dynamin, GTPas 77.9 17 0.00037 38.3 10.3 53 318-386 85-137 (240)
58 PF05673 DUF815: Protein of un 77.4 2.1 4.6E-05 45.2 3.3 124 202-354 24-155 (249)
59 PRK00411 cdc6 cell division co 76.9 1.5 3.2E-05 48.6 2.2 27 226-252 46-73 (394)
60 COG0593 DnaA ATPase involved i 76.6 1.2 2.7E-05 50.2 1.5 50 200-252 82-131 (408)
61 cd00046 DEXDc DEAD-like helica 76.1 1.1 2.4E-05 40.1 0.8 16 237-252 3-18 (144)
62 PRK08727 hypothetical protein; 75.4 1.3 2.8E-05 46.0 1.2 18 235-252 42-59 (233)
63 PF13245 AAA_19: Part of AAA d 75.0 1.5 3.3E-05 37.7 1.3 26 226-252 3-28 (76)
64 PF01935 DUF87: Domain of unkn 73.8 1.3 2.8E-05 45.4 0.6 51 405-456 164-214 (229)
65 TIGR02538 type_IV_pilB type IV 73.5 1.6 3.5E-05 51.4 1.4 28 225-252 307-334 (564)
66 PRK10436 hypothetical protein; 73.0 1.8 3.8E-05 49.9 1.6 27 226-252 210-236 (462)
67 TIGR01420 pilT_fam pilus retra 72.1 1.9 4.1E-05 47.6 1.5 28 225-252 113-140 (343)
68 TIGR02533 type_II_gspE general 71.9 1.9 4.1E-05 49.9 1.5 28 225-252 233-260 (486)
69 PRK06835 DNA replication prote 71.4 2.3 5.1E-05 46.7 2.0 36 216-253 167-202 (329)
70 PF00437 T2SE: Type II/IV secr 70.8 1.6 3.4E-05 46.1 0.4 19 234-252 127-145 (270)
71 cd01131 PilT Pilus retraction 70.4 1.7 3.7E-05 43.9 0.6 18 235-252 2-19 (198)
72 smart00382 AAA ATPases associa 70.2 1.8 3.8E-05 38.7 0.6 18 235-252 3-20 (148)
73 TIGR02525 plasmid_TraJ plasmid 70.0 2.3 5E-05 47.6 1.6 20 233-252 148-167 (372)
74 COG4962 CpaF Flp pilus assembl 69.9 3.5 7.5E-05 45.5 2.9 24 227-251 167-190 (355)
75 PF13401 AAA_22: AAA domain; P 69.6 1.4 3.1E-05 40.4 -0.2 19 234-252 4-22 (131)
76 PF12846 AAA_10: AAA-like doma 69.6 1.8 3.9E-05 45.3 0.6 19 234-252 1-19 (304)
77 PRK08939 primosomal protein Dn 69.0 2.3 5E-05 46.3 1.3 50 203-253 125-175 (306)
78 PF00270 DEAD: DEAD/DEAH box h 68.9 2.3 4.9E-05 40.6 1.1 25 226-252 8-32 (169)
79 PRK08181 transposase; Validate 68.8 3.3 7.2E-05 44.3 2.4 17 237-253 109-125 (269)
80 TIGR02524 dot_icm_DotB Dot/Icm 68.7 2.5 5.5E-05 47.0 1.5 21 232-252 132-152 (358)
81 COG5008 PilU Tfp pilus assembl 68.7 3.4 7.3E-05 44.2 2.4 31 222-252 115-145 (375)
82 PF13604 AAA_30: AAA domain; P 68.5 2.3 5E-05 43.0 1.1 28 225-252 9-36 (196)
83 cd01129 PulE-GspE PulE/GspE Th 68.2 2.9 6.2E-05 44.5 1.8 27 226-252 72-98 (264)
84 PRK12422 chromosomal replicati 67.9 2.8 6.2E-05 48.0 1.8 51 199-252 105-159 (445)
85 KOG0340 ATP-dependent RNA heli 67.2 6.5 0.00014 43.6 4.2 26 224-251 36-61 (442)
86 PTZ00112 origin recognition co 67.1 7.1 0.00015 48.3 4.9 21 232-252 779-799 (1164)
87 COG1484 DnaC DNA replication p 66.9 3.6 7.7E-05 43.6 2.2 41 210-253 84-124 (254)
88 TIGR03015 pepcterm_ATPase puta 66.5 3.6 7.8E-05 42.9 2.1 25 228-252 37-61 (269)
89 KOG0727 26S proteasome regulat 65.8 9.9 0.00021 40.5 5.0 117 151-268 99-246 (408)
90 PF01637 Arch_ATPase: Archaeal 64.8 2.3 5E-05 42.5 0.2 30 222-251 8-37 (234)
91 KOG0989 Replication factor C, 64.3 3.7 7.9E-05 44.8 1.6 31 222-252 45-75 (346)
92 PF01695 IstB_IS21: IstB-like 64.3 3 6.6E-05 41.6 1.0 21 233-253 46-66 (178)
93 TIGR01242 26Sp45 26S proteasom 63.5 5.3 0.00011 44.2 2.8 53 200-252 117-174 (364)
94 COG1222 RPT1 ATP-dependent 26S 62.3 9.3 0.0002 42.5 4.3 66 203-268 149-242 (406)
95 PF13191 AAA_16: AAA ATPase do 62.0 2.9 6.2E-05 40.6 0.3 28 224-251 14-41 (185)
96 TIGR02782 TrbB_P P-type conjug 61.6 3.8 8.2E-05 44.5 1.2 28 224-252 123-150 (299)
97 PRK13894 conjugal transfer ATP 60.8 3.7 8E-05 45.0 0.9 28 224-252 139-166 (319)
98 PRK06921 hypothetical protein; 60.7 5 0.00011 42.7 1.9 31 222-252 102-135 (266)
99 PF01580 FtsK_SpoIIIE: FtsK/Sp 60.4 6.4 0.00014 39.5 2.6 17 236-252 40-56 (205)
100 PRK09183 transposase/IS protei 60.0 5.8 0.00012 42.1 2.2 18 236-253 104-121 (259)
101 PF00004 AAA: ATPase family as 59.9 3.3 7.1E-05 37.7 0.3 15 237-251 1-15 (132)
102 PTZ00454 26S protease regulato 59.3 3.9 8.4E-05 46.2 0.8 54 199-252 139-197 (398)
103 PF13479 AAA_24: AAA domain 59.3 4 8.7E-05 41.7 0.9 20 234-253 3-22 (213)
104 PF00448 SRP54: SRP54-type pro 58.5 3.2 7E-05 42.2 0.0 17 236-252 3-19 (196)
105 smart00487 DEXDc DEAD-like hel 58.1 6.3 0.00014 37.6 2.0 18 235-252 25-42 (201)
106 PRK12402 replication factor C 57.8 5.6 0.00012 42.8 1.7 42 203-252 13-54 (337)
107 PRK13833 conjugal transfer pro 57.8 5.2 0.00011 44.0 1.5 26 226-252 137-162 (323)
108 PF13086 AAA_11: AAA domain; P 56.9 4.4 9.5E-05 40.5 0.7 17 236-252 19-35 (236)
109 PF05970 PIF1: PIF1-like helic 56.4 5.4 0.00012 44.3 1.3 36 212-251 4-39 (364)
110 PF13207 AAA_17: AAA domain; P 55.7 4.2 9E-05 36.9 0.2 16 236-251 1-16 (121)
111 PF06309 Torsin: Torsin; Inte 55.3 4.1 9E-05 38.8 0.2 17 235-251 53-70 (127)
112 cd01130 VirB11-like_ATPase Typ 54.8 6.3 0.00014 39.3 1.4 29 223-252 15-43 (186)
113 KOG0335 ATP-dependent RNA heli 54.1 7.6 0.00017 44.7 2.0 58 228-287 107-189 (482)
114 KOG1118 Lysophosphatidic acid 53.7 60 0.0013 35.4 8.4 55 637-699 175-237 (366)
115 PF05496 RuvB_N: Holliday junc 53.3 12 0.00025 39.3 3.1 43 208-251 23-67 (233)
116 PF00910 RNA_helicase: RNA hel 53.2 4.8 0.0001 36.5 0.2 16 237-252 1-16 (107)
117 PF05597 Phasin: Poly(hydroxya 53.2 1.2E+02 0.0026 29.2 9.7 78 627-706 38-127 (132)
118 PHA00729 NTP-binding motif con 53.1 7.6 0.00016 40.6 1.7 31 222-252 5-35 (226)
119 cd01382 MYSc_type_VI Myosin mo 52.8 48 0.001 40.5 8.6 22 231-252 88-109 (717)
120 PLN00020 ribulose bisphosphate 52.3 15 0.00033 41.3 3.9 53 199-251 109-165 (413)
121 cd00124 MYSc Myosin motor doma 51.9 47 0.001 40.2 8.3 36 216-252 68-104 (679)
122 TIGR00635 ruvB Holliday juncti 51.8 7 0.00015 41.8 1.2 41 211-252 6-48 (305)
123 PHA02544 44 clamp loader, smal 51.8 6.7 0.00015 42.1 1.1 22 231-252 39-61 (316)
124 PRK13900 type IV secretion sys 51.6 7.6 0.00016 42.8 1.5 28 224-252 151-178 (332)
125 PF00580 UvrD-helicase: UvrD/R 51.6 5.8 0.00013 41.7 0.6 22 231-252 10-31 (315)
126 PRK13342 recombination factor 51.5 8.3 0.00018 43.6 1.8 40 212-252 15-54 (413)
127 PRK13851 type IV secretion sys 51.2 6.1 0.00013 43.8 0.6 27 225-252 154-180 (344)
128 PF13671 AAA_33: AAA domain; P 50.2 6 0.00013 36.8 0.4 15 237-251 2-16 (143)
129 cd01378 MYSc_type_I Myosin mot 50.0 50 0.0011 40.0 8.1 22 231-252 83-104 (674)
130 PF02562 PhoH: PhoH-like prote 49.4 9.1 0.0002 39.4 1.6 19 233-251 18-36 (205)
131 TIGR03499 FlhF flagellar biosy 48.8 7 0.00015 41.9 0.7 17 236-252 196-212 (282)
132 TIGR02903 spore_lon_C ATP-depe 48.5 8.2 0.00018 46.1 1.2 43 202-252 151-193 (615)
133 PRK03992 proteasome-activating 48.3 4.9 0.00011 45.2 -0.7 51 202-252 128-183 (389)
134 cd01384 MYSc_type_XI Myosin mo 48.3 58 0.0013 39.5 8.3 22 231-252 85-106 (674)
135 cd00268 DEADc DEAD-box helicas 48.2 11 0.00024 37.4 1.9 23 227-251 31-53 (203)
136 PRK11776 ATP-dependent RNA hel 48.0 10 0.00022 43.2 1.8 23 226-250 35-57 (460)
137 PF07728 AAA_5: AAA domain (dy 47.1 6.2 0.00013 36.9 -0.1 15 237-251 2-16 (139)
138 PRK06547 hypothetical protein; 47.1 12 0.00025 37.3 1.8 28 224-251 5-32 (172)
139 PTZ00424 helicase 45; Provisio 46.5 10 0.00023 41.9 1.6 25 225-251 58-82 (401)
140 PRK12723 flagellar biosynthesi 46.4 7.5 0.00016 43.8 0.5 19 234-252 174-192 (388)
141 PRK13764 ATPase; Provisional 45.8 9.8 0.00021 45.3 1.3 21 233-253 256-276 (602)
142 PF13238 AAA_18: AAA domain; P 45.5 7.9 0.00017 35.0 0.4 16 237-252 1-16 (129)
143 PF07724 AAA_2: AAA domain (Cd 45.4 8.4 0.00018 38.3 0.5 17 235-251 4-20 (171)
144 PTZ00361 26 proteosome regulat 45.3 14 0.0003 42.4 2.3 17 236-252 219-235 (438)
145 PF06414 Zeta_toxin: Zeta toxi 45.3 9 0.0002 38.5 0.8 19 233-251 14-32 (199)
146 COG1201 Lhr Lhr-like helicases 44.5 13 0.00028 45.7 2.0 25 225-251 30-54 (814)
147 COG1419 FlhF Flagellar GTP-bin 44.4 13 0.00028 42.1 1.9 38 215-252 180-221 (407)
148 CHL00081 chlI Mg-protoporyphyr 44.2 6.4 0.00014 43.8 -0.5 45 200-252 12-56 (350)
149 PRK11192 ATP-dependent RNA hel 43.9 12 0.00027 42.1 1.7 24 226-251 32-55 (434)
150 TIGR02237 recomb_radB DNA repa 43.7 13 0.00027 37.4 1.6 26 227-252 2-30 (209)
151 PF07693 KAP_NTPase: KAP famil 43.4 12 0.00025 40.2 1.3 20 232-251 18-37 (325)
152 PRK14722 flhF flagellar biosyn 43.3 10 0.00022 42.6 0.8 19 234-252 137-155 (374)
153 TIGR02881 spore_V_K stage V sp 43.3 9.8 0.00021 40.0 0.7 18 235-252 43-60 (261)
154 PRK04837 ATP-dependent RNA hel 43.2 12 0.00027 42.0 1.6 24 226-251 39-62 (423)
155 COG1223 Predicted ATPase (AAA+ 42.5 11 0.00023 40.6 0.8 17 235-251 152-168 (368)
156 PF03215 Rad17: Rad17 cell cyc 42.5 12 0.00027 43.7 1.5 31 222-252 31-63 (519)
157 COG2256 MGS1 ATPase related to 42.1 16 0.00034 41.4 2.0 39 212-251 27-65 (436)
158 PRK13182 racA polar chromosome 42.1 1.3E+02 0.0029 30.2 8.5 60 639-710 88-147 (175)
159 PRK10590 ATP-dependent RNA hel 42.0 15 0.00032 42.0 2.0 24 226-251 32-55 (456)
160 PRK14961 DNA polymerase III su 41.7 11 0.00024 41.8 0.9 42 203-252 14-56 (363)
161 PF05729 NACHT: NACHT domain 41.4 12 0.00025 35.3 0.8 17 236-252 2-18 (166)
162 PLN03025 replication factor C 41.2 15 0.00032 39.9 1.7 21 232-252 32-52 (319)
163 TIGR01618 phage_P_loop phage n 40.8 11 0.00024 39.1 0.7 23 233-255 11-33 (220)
164 TIGR00618 sbcc exonuclease Sbc 40.6 22 0.00048 45.1 3.4 17 235-251 27-43 (1042)
165 PF02456 Adeno_IVa2: Adenoviru 40.3 10 0.00023 41.4 0.4 16 237-252 90-105 (369)
166 PRK00440 rfc replication facto 40.1 15 0.00033 39.0 1.6 22 231-252 35-56 (319)
167 PRK11331 5-methylcytosine-spec 40.0 14 0.0003 42.6 1.3 28 223-252 185-212 (459)
168 PRK00080 ruvB Holliday junctio 39.6 16 0.00034 39.9 1.6 40 212-252 28-69 (328)
169 TIGR01817 nifA Nif-specific re 39.2 18 0.00039 42.3 2.1 45 201-251 192-236 (534)
170 PF03193 DUF258: Protein of un 38.9 11 0.00024 37.4 0.2 26 226-253 29-54 (161)
171 PRK04195 replication factor C 38.9 20 0.00044 41.4 2.4 31 222-252 26-57 (482)
172 PF00063 Myosin_head: Myosin h 38.9 13 0.00027 45.0 0.8 21 231-251 82-102 (689)
173 PRK10536 hypothetical protein; 38.8 18 0.00039 38.7 1.8 41 202-252 52-92 (262)
174 cd01120 RecA-like_NTPases RecA 38.4 13 0.00027 34.7 0.6 16 237-252 2-17 (165)
175 TIGR00348 hsdR type I site-spe 38.1 18 0.00038 43.7 1.9 30 222-252 247-281 (667)
176 PF11594 Med28: Mediator compl 38.1 2.8E+02 0.0061 25.8 9.1 60 649-709 18-77 (106)
177 PF12775 AAA_7: P-loop contain 38.0 15 0.00033 39.3 1.1 27 225-252 25-51 (272)
178 PF13555 AAA_29: P-loop contai 37.8 13 0.00028 31.1 0.4 15 237-251 26-40 (62)
179 KOG1514 Origin recognition com 37.7 35 0.00075 41.2 4.1 50 423-478 572-630 (767)
180 PF06048 DUF927: Domain of unk 37.7 18 0.00039 38.8 1.7 32 219-251 179-210 (286)
181 KOG2543 Origin recognition com 37.4 13 0.00029 41.6 0.6 37 237-287 33-69 (438)
182 PF11932 DUF3450: Protein of u 37.4 1.9E+02 0.0041 30.4 9.3 76 629-705 22-101 (251)
183 PRK13341 recombination factor 37.2 18 0.00039 44.1 1.8 23 230-252 48-70 (725)
184 PF10236 DAP3: Mitochondrial r 37.2 16 0.00036 39.7 1.3 23 230-252 19-41 (309)
185 TIGR02788 VirB11 P-type DNA tr 37.0 19 0.00041 39.1 1.7 30 222-252 133-162 (308)
186 PRK10416 signal recognition pa 37.0 21 0.00045 39.2 2.1 18 235-252 115-132 (318)
187 cd00632 Prefoldin_beta Prefold 36.8 1.8E+02 0.0039 26.4 7.8 37 670-706 66-102 (105)
188 PRK06067 flagellar accessory p 36.6 23 0.0005 36.4 2.2 31 221-251 9-42 (234)
189 COG1219 ClpX ATP-dependent pro 36.5 16 0.00035 40.2 1.0 19 233-251 96-114 (408)
190 COG1125 OpuBA ABC-type proline 36.0 15 0.00033 39.3 0.7 63 413-483 145-217 (309)
191 TIGR00614 recQ_fam ATP-depende 35.9 22 0.00047 40.8 2.1 25 225-251 19-43 (470)
192 KOG2373 Predicted mitochondria 35.9 25 0.00053 39.2 2.3 28 224-252 261-291 (514)
193 TIGR01360 aden_kin_iso1 adenyl 35.9 23 0.00049 34.6 1.9 30 236-265 5-40 (188)
194 TIGR02902 spore_lonB ATP-depen 35.8 18 0.00038 42.5 1.4 42 202-251 62-103 (531)
195 PF13173 AAA_14: AAA domain 35.8 15 0.00033 34.1 0.6 17 236-252 4-20 (128)
196 smart00242 MYSc Myosin. Large 34.8 25 0.00053 42.6 2.4 21 231-251 89-109 (677)
197 TIGR01837 PHA_granule_1 poly(h 34.6 2.3E+02 0.0049 26.6 8.3 78 627-706 25-114 (118)
198 KOG0926 DEAH-box RNA helicase 34.3 23 0.0005 43.2 1.9 19 233-251 270-288 (1172)
199 cd02021 GntK Gluconate kinase 34.0 17 0.00036 34.4 0.6 15 237-251 2-16 (150)
200 PF13118 DUF3972: Protein of u 33.9 2.4E+02 0.0052 27.0 8.2 61 625-699 64-124 (126)
201 PRK11634 ATP-dependent RNA hel 33.9 21 0.00045 42.8 1.5 25 225-251 36-60 (629)
202 PF06745 KaiC: KaiC; InterPro 33.8 23 0.00051 36.1 1.7 29 223-251 5-36 (226)
203 cd01394 radB RadB. The archaea 33.7 26 0.00056 35.5 2.0 29 224-252 6-37 (218)
204 PRK11448 hsdR type I restricti 33.4 20 0.00042 45.9 1.2 29 224-253 424-452 (1123)
205 PRK14531 adenylate kinase; Pro 33.4 20 0.00044 35.5 1.1 29 236-264 4-38 (183)
206 cd01428 ADK Adenylate kinase ( 33.3 20 0.00044 35.2 1.1 15 237-251 2-16 (194)
207 KOG3859 Septins (P-loop GTPase 33.2 22 0.00048 38.4 1.4 24 228-251 36-59 (406)
208 PRK04537 ATP-dependent RNA hel 33.0 23 0.0005 41.9 1.7 24 226-251 40-63 (572)
209 PF10046 BLOC1_2: Biogenesis o 32.9 3E+02 0.0065 24.9 8.6 33 671-704 60-92 (99)
210 TIGR02173 cyt_kin_arch cytidyl 32.8 31 0.00066 33.1 2.3 31 236-266 2-38 (171)
211 TIGR01359 UMP_CMP_kin_fam UMP- 32.6 20 0.00043 35.0 1.0 15 237-251 2-16 (183)
212 KOG0739 AAA+-type ATPase [Post 32.6 25 0.00054 38.5 1.7 49 203-251 131-183 (439)
213 PRK05703 flhF flagellar biosyn 32.5 18 0.00039 41.3 0.6 17 236-252 223-239 (424)
214 PRK07261 topology modulation p 32.3 20 0.00044 35.3 0.9 15 237-251 3-17 (171)
215 PRK00131 aroK shikimate kinase 32.2 21 0.00045 34.2 1.0 17 235-251 5-21 (175)
216 PRK14974 cell division protein 32.1 32 0.0007 38.1 2.5 19 234-252 140-158 (336)
217 PRK09361 radB DNA repair and r 32.1 31 0.00067 35.1 2.3 31 222-252 8-41 (225)
218 TIGR03819 heli_sec_ATPase heli 31.8 23 0.0005 39.2 1.4 30 222-252 167-196 (340)
219 PRK10865 protein disaggregatio 31.7 24 0.00051 44.0 1.6 18 235-252 599-616 (857)
220 COG0419 SbcC ATPase involved i 31.6 56 0.0012 40.9 4.8 19 233-251 24-42 (908)
221 PF00735 Septin: Septin; Inte 31.5 13 0.00028 40.0 -0.6 21 231-251 1-21 (281)
222 cd01393 recA_like RecA is a b 31.4 31 0.00067 35.0 2.1 31 222-252 4-37 (226)
223 cd01123 Rad51_DMC1_radA Rad51_ 31.3 28 0.00061 35.5 1.9 31 222-252 4-37 (235)
224 cd01127 TrwB Bacterial conjuga 31.1 19 0.00042 40.7 0.6 19 234-252 42-60 (410)
225 TIGR02640 gas_vesic_GvpN gas v 31.1 28 0.0006 36.8 1.8 28 222-251 11-38 (262)
226 PRK09270 nucleoside triphospha 31.1 31 0.00066 35.6 2.1 36 216-251 14-50 (229)
227 PRK06995 flhF flagellar biosyn 31.0 19 0.00042 41.8 0.6 18 235-252 257-274 (484)
228 KOG0330 ATP-dependent RNA heli 30.9 45 0.00098 37.6 3.3 26 224-251 90-115 (476)
229 cd01126 TraG_VirD4 The TraG/Tr 30.7 25 0.00055 39.1 1.4 16 237-252 2-17 (384)
230 PRK04328 hypothetical protein; 30.7 32 0.00069 36.1 2.1 29 222-250 8-39 (249)
231 cd01850 CDC_Septin CDC/Septin. 30.6 21 0.00044 38.3 0.7 21 231-251 1-21 (276)
232 cd01383 MYSc_type_VIII Myosin 30.6 36 0.00079 41.2 2.8 35 216-251 74-109 (677)
233 cd00464 SK Shikimate kinase (S 30.6 23 0.0005 33.3 1.0 16 236-251 1-16 (154)
234 COG0630 VirB11 Type IV secreto 30.1 20 0.00043 39.2 0.5 20 233-252 142-161 (312)
235 PLN00206 DEAD-box ATP-dependen 30.1 34 0.00073 39.9 2.4 23 226-250 152-174 (518)
236 TIGR01241 FtsH_fam ATP-depende 30.0 20 0.00044 41.4 0.6 18 235-252 89-106 (495)
237 PRK08118 topology modulation p 30.0 24 0.00051 34.8 0.9 15 237-251 4-18 (167)
238 PF13476 AAA_23: AAA domain; P 29.9 18 0.0004 35.2 0.1 18 235-252 20-37 (202)
239 PRK01297 ATP-dependent RNA hel 29.8 24 0.00051 40.5 1.1 25 225-251 117-141 (475)
240 PHA02653 RNA helicase NPH-II; 29.8 34 0.00074 41.4 2.4 24 225-250 172-195 (675)
241 PRK00736 hypothetical protein; 29.7 1.6E+02 0.0035 24.9 5.8 37 672-708 17-53 (68)
242 TIGR03158 cas3_cyano CRISPR-as 29.7 30 0.00065 38.3 1.8 26 226-251 6-31 (357)
243 PRK02119 hypothetical protein; 29.6 1.6E+02 0.0034 25.4 5.8 37 672-708 21-57 (73)
244 PRK00771 signal recognition pa 29.6 37 0.0008 39.0 2.5 19 234-252 95-113 (437)
245 PRK00295 hypothetical protein; 29.5 1.6E+02 0.0035 24.9 5.8 37 672-708 17-53 (68)
246 TIGR01313 therm_gnt_kin carboh 29.5 21 0.00045 34.4 0.4 15 237-251 1-15 (163)
247 PF10146 zf-C4H2: Zinc finger- 29.5 2.8E+02 0.006 29.2 8.7 62 634-698 27-91 (230)
248 KOG2228 Origin recognition com 29.4 1.3E+02 0.0028 33.8 6.4 36 212-251 31-66 (408)
249 TIGR02746 TraC-F-type type-IV 29.4 22 0.00047 43.6 0.7 20 233-252 429-448 (797)
250 COG2607 Predicted ATPase (AAA+ 29.4 48 0.001 35.4 3.1 50 227-292 77-127 (287)
251 PHA02244 ATPase-like protein 29.3 35 0.00077 38.4 2.2 17 236-252 121-137 (383)
252 cd01385 MYSc_type_IX Myosin mo 29.3 37 0.00079 41.3 2.6 21 231-251 91-111 (692)
253 PF04102 SlyX: SlyX; InterPro 29.2 1.2E+02 0.0026 25.7 5.0 37 672-708 16-52 (69)
254 PF05130 FlgN: FlgN protein; 29.2 1.3E+02 0.0027 27.8 5.7 44 630-675 20-63 (143)
255 cd01381 MYSc_type_VII Myosin m 29.0 39 0.00084 40.9 2.7 21 231-251 83-103 (671)
256 PF14772 NYD-SP28: Sperm tail 28.9 4.4E+02 0.0095 23.8 9.1 72 630-707 22-99 (104)
257 cd01387 MYSc_type_XV Myosin mo 28.8 38 0.00081 41.1 2.5 21 231-251 84-104 (677)
258 TIGR02322 phosphon_PhnN phosph 28.6 22 0.00048 34.7 0.5 17 236-252 3-19 (179)
259 cd01377 MYSc_type_II Myosin mo 28.6 37 0.0008 41.3 2.4 35 216-251 73-108 (693)
260 PF02478 Pneumo_phosprot: Pneu 28.6 1.6E+02 0.0036 31.1 6.7 58 627-684 199-257 (279)
261 TIGR01351 adk adenylate kinase 28.2 35 0.00075 34.6 1.8 29 237-265 2-36 (210)
262 PF12774 AAA_6: Hydrolytic ATP 28.1 30 0.00064 36.2 1.4 19 234-252 32-50 (231)
263 KOG0735 AAA+-type ATPase [Post 28.1 34 0.00073 41.4 1.9 19 233-251 700-718 (952)
264 TIGR03877 thermo_KaiC_1 KaiC d 28.1 37 0.00081 35.2 2.1 27 224-250 8-37 (237)
265 COG1102 Cmk Cytidylate kinase 27.9 33 0.00071 34.4 1.5 32 237-268 3-40 (179)
266 TIGR00376 DNA helicase, putati 27.9 23 0.00049 42.6 0.5 17 236-252 175-191 (637)
267 PRK02793 phi X174 lysis protei 27.9 1.8E+02 0.0038 25.0 5.8 37 672-708 20-56 (72)
268 PRK00846 hypothetical protein; 27.8 1.7E+02 0.0037 25.7 5.7 37 672-708 25-61 (77)
269 TIGR03744 traC_PFL_4706 conjug 27.7 25 0.00054 44.0 0.8 20 233-252 474-493 (893)
270 TIGR01389 recQ ATP-dependent D 27.7 35 0.00076 40.4 2.0 25 225-251 21-45 (591)
271 TIGR03881 KaiC_arch_4 KaiC dom 27.6 38 0.00082 34.5 2.0 29 224-252 7-38 (229)
272 PHA01747 putative ATP-dependen 27.6 28 0.00061 39.2 1.1 95 217-336 173-273 (425)
273 cd00820 PEPCK_HprK Phosphoenol 27.5 26 0.00056 32.4 0.7 18 235-252 16-33 (107)
274 PRK14964 DNA polymerase III su 27.5 26 0.00056 40.8 0.9 41 203-251 11-52 (491)
275 TIGR02030 BchI-ChlI magnesium 27.5 23 0.0005 39.2 0.4 31 222-252 13-43 (337)
276 TIGR02880 cbbX_cfxQ probable R 27.4 24 0.00053 37.8 0.6 16 236-251 60-75 (284)
277 CHL00181 cbbX CbbX; Provisiona 27.3 26 0.00057 37.7 0.8 16 237-252 62-77 (287)
278 TIGR00602 rad24 checkpoint pro 27.1 31 0.00067 41.5 1.4 17 236-252 112-128 (637)
279 cd01380 MYSc_type_V Myosin mot 27.0 42 0.00091 40.8 2.5 21 231-251 83-103 (691)
280 cd02020 CMPK Cytidine monophos 26.8 29 0.00063 32.2 0.9 15 237-251 2-16 (147)
281 KOG0953 Mitochondrial RNA heli 26.7 31 0.00067 40.5 1.2 16 236-251 193-208 (700)
282 PRK15429 formate hydrogenlyase 26.7 24 0.00052 42.6 0.4 46 200-251 371-416 (686)
283 KOG0744 AAA+-type ATPase [Post 26.7 60 0.0013 36.0 3.3 20 234-253 177-196 (423)
284 cd01983 Fer4_NifH The Fer4_Nif 26.6 29 0.00062 29.1 0.8 16 237-252 2-17 (99)
285 KOG0726 26S proteasome regulat 26.6 48 0.001 36.3 2.5 34 236-269 221-277 (440)
286 PRK08233 hypothetical protein; 26.6 28 0.00061 33.7 0.8 15 237-251 6-20 (182)
287 COG5019 CDC3 Septin family pro 26.5 32 0.0007 38.4 1.3 21 231-251 20-40 (373)
288 PRK06645 DNA polymerase III su 26.4 28 0.00061 40.7 0.9 27 225-251 33-60 (507)
289 PRK05580 primosome assembly pr 26.4 38 0.00083 41.0 2.0 18 234-251 162-179 (679)
290 PRK14127 cell division protein 26.3 2.1E+02 0.0046 26.7 6.4 41 667-707 20-63 (109)
291 PRK06696 uridine kinase; Valid 26.3 42 0.0009 34.4 2.0 30 222-251 7-39 (223)
292 PRK11889 flhF flagellar biosyn 26.2 25 0.00054 40.0 0.4 18 235-252 242-259 (436)
293 PRK06217 hypothetical protein; 26.1 29 0.00063 34.3 0.8 15 237-251 4-18 (183)
294 TIGR00064 ftsY signal recognit 26.1 25 0.00055 37.6 0.4 18 235-252 73-90 (272)
295 KOG1803 DNA helicase [Replicat 25.9 45 0.00097 39.6 2.3 18 235-252 202-219 (649)
296 PRK11664 ATP-dependent RNA hel 25.8 38 0.00083 41.9 1.9 28 222-251 10-37 (812)
297 COG3829 RocR Transcriptional r 25.8 38 0.00081 39.8 1.7 44 199-248 239-282 (560)
298 TIGR02236 recomb_radA DNA repa 25.7 45 0.00098 35.9 2.3 31 222-252 80-113 (310)
299 PF08477 Miro: Miro-like prote 25.7 25 0.00055 31.4 0.3 16 237-252 2-17 (119)
300 PRK12726 flagellar biosynthesi 25.6 28 0.00061 39.4 0.7 18 235-252 207-224 (407)
301 PF05667 DUF812: Protein of un 25.5 3.9E+02 0.0085 32.1 10.1 53 655-707 375-427 (594)
302 cd01124 KaiC KaiC is a circadi 25.2 34 0.00073 33.3 1.1 15 237-251 2-16 (187)
303 PRK04406 hypothetical protein; 25.2 2.1E+02 0.0045 24.8 5.8 37 672-708 23-59 (75)
304 PRK02496 adk adenylate kinase; 25.0 45 0.00097 32.8 2.0 29 237-265 4-38 (184)
305 PRK14721 flhF flagellar biosyn 25.0 29 0.00062 39.7 0.6 19 234-252 191-209 (420)
306 cd02023 UMPK Uridine monophosp 25.0 28 0.0006 34.7 0.5 15 237-251 2-16 (198)
307 TIGR00231 small_GTP small GTP- 24.9 28 0.00061 31.5 0.5 16 236-251 3-18 (161)
308 PRK14952 DNA polymerase III su 24.8 32 0.00069 41.0 0.9 41 203-251 11-52 (584)
309 PF14532 Sigma54_activ_2: Sigm 24.7 34 0.00075 32.1 1.0 21 231-251 18-38 (138)
310 PRK14956 DNA polymerase III su 24.6 30 0.00066 40.2 0.7 42 203-252 16-58 (484)
311 PRK14723 flhF flagellar biosyn 24.6 30 0.00065 42.4 0.7 23 641-663 674-696 (767)
312 TIGR03689 pup_AAA proteasome A 24.4 31 0.00068 40.4 0.8 16 236-251 218-233 (512)
313 COG0467 RAD55 RecA-superfamily 24.1 48 0.001 34.8 2.0 26 226-251 12-40 (260)
314 PRK10820 DNA-binding transcrip 24.1 41 0.0009 39.3 1.7 47 199-251 198-244 (520)
315 PF03668 ATP_bind_2: P-loop AT 24.1 65 0.0014 34.9 3.0 32 236-267 3-45 (284)
316 PF04466 Terminase_3: Phage te 24.0 26 0.00056 39.4 0.0 17 237-253 5-21 (387)
317 PRK11034 clpA ATP-dependent Cl 23.9 33 0.00073 42.1 0.9 44 203-254 184-227 (758)
318 PF00485 PRK: Phosphoribulokin 23.9 28 0.00061 34.8 0.2 15 237-251 2-16 (194)
319 PRK14530 adenylate kinase; Pro 23.8 37 0.0008 34.5 1.1 16 236-251 5-20 (215)
320 PRK11057 ATP-dependent DNA hel 23.8 42 0.00092 40.0 1.7 24 226-251 34-57 (607)
321 PF13805 Pil1: Eisosome compon 23.7 7.3E+02 0.016 26.9 10.7 75 628-705 57-131 (271)
322 PF08599 Nbs1_C: DNA damage re 23.7 35 0.00076 28.6 0.7 24 640-663 27-50 (65)
323 COG1136 SalX ABC-type antimicr 23.7 31 0.00066 36.2 0.5 15 237-251 34-48 (226)
324 PRK06305 DNA polymerase III su 23.6 34 0.00074 39.3 0.9 42 203-252 15-57 (451)
325 PLN02200 adenylate kinase fami 23.6 40 0.00086 35.2 1.3 31 235-265 44-80 (234)
326 PF10923 DUF2791: P-loop Domai 23.5 44 0.00095 38.2 1.7 27 225-251 40-66 (416)
327 PRK14528 adenylate kinase; Pro 23.5 41 0.00089 33.5 1.4 30 236-265 3-38 (186)
328 PF04548 AIG1: AIG1 family; I 23.5 32 0.00068 35.1 0.5 16 236-251 2-17 (212)
329 PF05872 DUF853: Bacterial pro 23.5 83 0.0018 36.4 3.8 61 408-472 236-315 (502)
330 PRK09111 DNA polymerase III su 23.5 33 0.00071 41.0 0.7 29 223-251 34-63 (598)
331 PRK14532 adenylate kinase; Pro 23.4 37 0.00081 33.4 1.0 30 236-265 2-37 (188)
332 CHL00195 ycf46 Ycf46; Provisio 23.4 33 0.00071 40.0 0.7 17 235-251 260-276 (489)
333 cd02025 PanK Pantothenate kina 23.3 24 0.00052 36.4 -0.4 13 239-251 4-16 (220)
334 PRK01172 ski2-like helicase; P 23.3 47 0.001 40.0 2.0 22 228-251 33-54 (674)
335 PF00931 NB-ARC: NB-ARC domain 23.3 45 0.00098 34.8 1.7 30 222-251 5-36 (287)
336 PRK00300 gmk guanylate kinase; 23.2 33 0.00072 34.2 0.6 17 235-251 6-22 (205)
337 PRK04325 hypothetical protein; 23.1 2.4E+02 0.0052 24.3 5.8 37 672-708 21-57 (74)
338 KOG0729 26S proteasome regulat 23.1 43 0.00093 36.1 1.4 16 236-251 213-228 (435)
339 PRK10917 ATP-dependent DNA hel 23.1 46 0.001 40.3 1.9 39 209-251 261-299 (681)
340 PF10412 TrwB_AAD_bind: Type I 23.0 26 0.00057 39.3 -0.2 18 235-252 16-33 (386)
341 TIGR03263 guanyl_kin guanylate 22.9 34 0.00075 33.3 0.7 16 236-251 3-18 (180)
342 cd01386 MYSc_type_XVIII Myosin 22.9 51 0.0011 40.6 2.2 21 231-251 83-103 (767)
343 PRK14955 DNA polymerase III su 22.8 37 0.0008 38.2 0.9 41 203-251 14-55 (397)
344 PRK14729 miaA tRNA delta(2)-is 22.5 40 0.00086 36.8 1.1 25 635-659 256-280 (300)
345 PRK04301 radA DNA repair and r 22.5 61 0.0013 35.2 2.5 31 222-252 87-120 (317)
346 KOG0730 AAA+-type ATPase [Post 22.3 50 0.0011 39.6 1.8 17 235-251 469-485 (693)
347 cd01379 MYSc_type_III Myosin m 22.3 55 0.0012 39.5 2.3 21 231-251 83-103 (653)
348 PRK14527 adenylate kinase; Pro 22.2 52 0.0011 32.7 1.8 30 235-264 7-42 (191)
349 COG3839 MalK ABC-type sugar tr 22.2 35 0.00076 37.9 0.6 15 237-251 32-46 (338)
350 KOG0354 DEAD-box like helicase 22.2 53 0.0012 40.0 2.1 44 205-251 44-93 (746)
351 PRK14958 DNA polymerase III su 22.2 36 0.00079 39.8 0.7 41 203-251 14-55 (509)
352 TIGR00929 VirB4_CagE type IV s 22.2 35 0.00076 41.6 0.6 19 234-252 434-452 (785)
353 TIGR03238 dnd_assoc_3 dnd syst 22.1 47 0.001 38.6 1.6 27 226-252 18-50 (504)
354 PF02534 T4SS-DNA_transf: Type 22.1 45 0.00097 38.1 1.5 18 235-252 45-62 (469)
355 PF00158 Sigma54_activat: Sigm 22.1 44 0.00095 33.1 1.2 94 231-336 19-124 (168)
356 PRK04040 adenylate kinase; Pro 22.0 39 0.00084 34.0 0.8 16 236-251 4-19 (188)
357 PRK14970 DNA polymerase III su 22.0 50 0.0011 36.5 1.7 30 223-252 27-57 (367)
358 PRK06762 hypothetical protein; 22.0 39 0.00085 32.5 0.8 16 236-251 4-19 (166)
359 TIGR02397 dnaX_nterm DNA polym 22.0 49 0.0011 35.9 1.7 27 225-251 26-53 (355)
360 PRK14962 DNA polymerase III su 22.0 51 0.0011 38.2 1.8 42 203-252 12-54 (472)
361 PRK10078 ribose 1,5-bisphospho 21.8 36 0.00077 33.8 0.5 16 236-251 4-19 (186)
362 COG3842 PotA ABC-type spermidi 21.6 36 0.00079 37.9 0.6 32 443-482 186-217 (352)
363 PRK12724 flagellar biosynthesi 21.6 37 0.0008 38.9 0.6 18 235-252 224-241 (432)
364 PRK04182 cytidylate kinase; Pr 21.5 66 0.0014 31.0 2.3 32 236-267 2-39 (180)
365 PHA02624 large T antigen; Prov 21.4 56 0.0012 39.1 2.1 26 226-251 421-448 (647)
366 cd03274 ABC_SMC4_euk Eukaryoti 21.4 39 0.00085 34.6 0.7 17 236-252 27-43 (212)
367 cd02027 APSK Adenosine 5'-phos 21.3 41 0.0009 32.3 0.8 16 236-251 1-16 (149)
368 TIGR02639 ClpA ATP-dependent C 21.3 36 0.00077 41.6 0.5 32 223-254 192-223 (731)
369 TIGR01650 PD_CobS cobaltochela 21.2 43 0.00093 37.0 1.0 18 234-251 64-81 (327)
370 PRK03839 putative kinase; Prov 21.2 41 0.00089 33.0 0.8 15 237-251 3-17 (180)
371 cd00071 GMPK Guanosine monopho 21.0 38 0.00082 32.1 0.5 15 237-251 2-16 (137)
372 TIGR00643 recG ATP-dependent D 20.9 57 0.0012 39.1 2.1 38 210-251 236-273 (630)
373 PRK05896 DNA polymerase III su 20.8 39 0.00084 40.4 0.6 30 223-252 26-56 (605)
374 PRK05342 clpX ATP-dependent pr 20.7 44 0.00095 38.1 1.0 19 234-252 108-126 (412)
375 COG1162 Predicted GTPases [Gen 20.7 1.1E+02 0.0024 33.5 3.9 85 226-331 158-245 (301)
376 smart00763 AAA_PrkA PrkA AAA d 20.6 80 0.0017 35.4 2.9 41 206-251 52-95 (361)
377 TIGR02688 conserved hypothetic 20.5 43 0.00093 38.4 0.9 27 227-255 204-230 (449)
378 cd00983 recA RecA is a bacter 20.5 67 0.0014 35.5 2.3 32 220-251 37-72 (325)
379 PRK11034 clpA ATP-dependent Cl 20.4 66 0.0014 39.6 2.5 19 234-252 488-506 (758)
380 PRK01184 hypothetical protein; 20.4 60 0.0013 31.9 1.8 15 236-250 3-17 (184)
381 PF10267 Tmemb_cc2: Predicted 20.4 6.1E+02 0.013 29.0 9.8 34 676-709 46-83 (395)
382 cd03279 ABC_sbcCD SbcCD and ot 20.4 44 0.00095 34.0 0.8 20 234-253 28-47 (213)
383 PF08111 Pea-VEAacid: Pea-VEAa 20.3 43 0.00093 19.9 0.4 11 667-677 4-14 (15)
384 TIGR02655 circ_KaiC circadian 20.2 87 0.0019 36.3 3.3 47 226-283 252-301 (484)
385 TIGR00382 clpX endopeptidase C 20.2 43 0.00094 38.1 0.8 19 234-252 116-134 (413)
386 cd03240 ABC_Rad50 The catalyti 20.1 42 0.00092 34.0 0.7 17 236-252 24-40 (204)
387 cd02019 NK Nucleoside/nucleoti 20.1 42 0.00091 27.9 0.5 15 237-251 2-16 (69)
No 1
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-98 Score=812.17 Aligned_cols=455 Identities=49% Similarity=0.737 Sum_probs=392.6
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
....++|+||||+||++++|...++.++|++ |..+.++||+|+.+||++.|++++.|+||++||+.++|++||+.+++|
T Consensus 204 ~v~ehrI~VCVRKRPLnkkE~~~keiDvisv-ps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~P 282 (676)
T KOG0246|consen 204 GVNEHRICVCVRKRPLNKKELTKKEIDVISV-PSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKP 282 (676)
T ss_pred CCccceEEEEeecCCCCchhccccccceEec-cccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhH
Confidence 4667899999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC------------CCCccchHHHHHHHhh-hccccceeeEEEEEEEecCeeee
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ------------PLPLKASHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFD 291 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~------------Gl~~~a~~~if~~i~~-~~~~~~~~V~vS~~EIYne~v~D 291 (716)
||+.+|+|..+||||||||||||||||. |++..+.+++|.++.+ .+...++.|++||||||+++|||
T Consensus 283 lV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfD 362 (676)
T KOG0246|consen 283 LVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYD 362 (676)
T ss_pred HHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhh
Confidence 9999999999999999999999999994 5788899999999998 78889999999999999999999
Q ss_pred cCCCCCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCce
Q 042351 292 LLNDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPAR 371 (716)
Q Consensus 292 LL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~ 371 (716)
||+++++|+++||++++|+|.||+|..|.+++|++++|+.|+..|+++.|.+|..|||||+||+|.++... ..+
T Consensus 363 LL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~------~~k 436 (676)
T KOG0246|consen 363 LLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG------EFK 436 (676)
T ss_pred hhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC------cce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998652 247
Q ss_pred eEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCC-CceEEEEE
Q 042351 372 LVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVG-DSRTVMIS 450 (716)
Q Consensus 372 ~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgG-nskT~mIa 450 (716)
++||++||||||+||++++.++++++|+||+.|||||+||++||+||.+++.|+|||.||||++|||||.| ||+||||+
T Consensus 437 ~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA 516 (676)
T KOG0246|consen 437 LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIA 516 (676)
T ss_pred eEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhcccccCCcc-cCCCCCcccccccCccccccccCCCCCCcCCCCCCCCccccccCcccc
Q 042351 451 CISPSSGSCEHTINTLRYADRVKSLSKGNIS-KRDPLSSSSNLRDSTAFPVSSVVPTKLTSEDNVNDVPHEKSRFGWAKQ 529 (716)
Q Consensus 451 ~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (716)
||||+..+||+||||||||+|+|++...... ...|. ......|.+ +... +
T Consensus 517 ~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~~~~~~~~------~~~~~~p~~----------~~~s-------------~ 567 (676)
T KOG0246|consen 517 TISPGISSCEHTLNTLRYADRVKELSVDGGPSGRMPR------AIGEETPNS----------DPES-------------N 567 (676)
T ss_pred EeCCCcchhhhhHHHHHHHHHHHhhcCCCCccccCcc------cccCCCccc----------cchh-------------c
Confidence 9999999999999999999999999765432 11110 000000000 0000 0
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCCCcccCcCCCcccccccccCCCchhhhhccccccccccccccccchhhhhhhhhh
Q 042351 530 TEREPSPPRVNRIPSGRAEGNLAPYPEYYKGQRGGQYDVTEDDYDYSEETYEQEKTSWTNDAKLETYQMSASEDMRKIDA 609 (716)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (716)
....++.| ..++ +...
T Consensus 568 ~~~~~~~~-------------------------------~~~~-~~~~-------------------------------- 583 (676)
T KOG0246|consen 568 SETQPLNP-------------------------------SRDE-EPSS-------------------------------- 583 (676)
T ss_pred cccCCCCc-------------------------------cccc-cccc--------------------------------
Confidence 00000000 0000 0000
Q ss_pred hhhcccccccccCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHH
Q 042351 610 VKKRRDLSSFEANDSHSDDDLNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAAV 689 (716)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~e~I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~ 689 (716)
+.. .....+..+-+.++.++..++.-+...+.|++-+..+..+.+.|.+|++.|+.+.+.+|+|+++.
T Consensus 584 ----------e~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~s~l~q~~~~ 651 (676)
T KOG0246|consen 584 ----------EPN--EENSEREEASEHREVLVKEVRNSLNRSEKWIRLDRPIQSKTESVSSDMPIVAHKAESDLEQEEDL 651 (676)
T ss_pred ----------Ccc--ccccchhhhhhhHHHHHhhhccccccccccccccchhhhcccccccCcchhHHHhHHHHHHHHHH
Confidence 000 00112233345678899999999999999999887777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 042351 690 IVQLQTRLAQFQRHLNEYNVLA 711 (716)
Q Consensus 690 I~~Lq~rL~~F~~~L~eeE~ls 711 (716)
+..+|..+..+...+.+|+-++
T Consensus 652 ~~~~~~~~~~~~~~~~~e~~~~ 673 (676)
T KOG0246|consen 652 LAALRKEVKDTLNTVLAEEKVL 673 (676)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999988775
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-81 Score=696.31 Aligned_cols=336 Identities=39% Similarity=0.575 Sum_probs=307.5
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
...+|+|+||+||++..+.......++.+++....+.++.+.....- ..+.|+||+||+++++|++||+.++.|||
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~ftfD~vf~~~stQ~dvy~~~~~~lV 78 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEG----KPKSFTFDAVFDSDSTQDDVYQETVAPLV 78 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccC----CCCCceeeeeecCCCCHHHHHHHHhHHHH
Confidence 35689999999999999999999999999888888888776543222 24569999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC-------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCCC--
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP-------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRK-- 297 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G-------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~~-- 297 (716)
++|++|||+||||||||||||||||.| ++|+++..||..|........|.|+|||+|||||.|+|||++..
T Consensus 79 ~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~ 158 (574)
T KOG4280|consen 79 ESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPK 158 (574)
T ss_pred HHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcC
Confidence 999999999999999999999999975 68899999999999866666899999999999999999998754
Q ss_pred cceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEE
Q 042351 298 KLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLS 377 (716)
Q Consensus 298 ~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~ 377 (716)
.+.++++++.||||+||+++.|.++++++.+|..|.++|.+++|.||..|||||+||+|+|+......+.......|||+
T Consensus 159 ~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rln 238 (574)
T KOG4280|consen 159 GLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLN 238 (574)
T ss_pred CceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceee
Confidence 89999999999999999999999999999999999999999999999999999999999999855444444556789999
Q ss_pred EEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCC-CCcCCCChhhHhhhhhcCCCceEEEEEEeCCCC
Q 042351 378 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG-HIPFRGSKLTEVLRDSFVGDSRTVMISCISPSS 456 (716)
Q Consensus 378 fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~-hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~ 456 (716)
|||||||||..++++. +.+.+|+..||+||++||+||.||.+... ||||||||||+||||||||||+|+|||||||+.
T Consensus 239 lvDLagsEr~~~tga~-G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~ 317 (574)
T KOG4280|consen 239 LVDLAGSERQSKTGAE-GERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSS 317 (574)
T ss_pred eeeccchhhhcccCcc-chhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchh
Confidence 9999999998887765 56777999999999999999999998776 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccCCcccCCCCC
Q 042351 457 GSCEHTINTLRYADRVKSLSKGNISKRDPLS 487 (716)
Q Consensus 457 ~~~eeTlsTLrfA~R~k~I~~~~~~~~dp~~ 487 (716)
.+++||++|||||+|+|.|+|.+.+|.||.-
T Consensus 318 ~~~~ETlsTLrfA~Rak~I~nk~~ined~~~ 348 (574)
T KOG4280|consen 318 DNYEETLSTLRFAQRAKAIKNKPVINEDPKD 348 (574)
T ss_pred hhhHHHHHHHHHHHHHHHhhccccccCCcch
Confidence 9999999999999999999999999999973
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-78 Score=700.97 Aligned_cols=336 Identities=35% Similarity=0.572 Sum_probs=298.7
Q ss_pred ccccCCCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhh
Q 042351 141 DKERANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSE 220 (716)
Q Consensus 141 ~~~~~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~ 220 (716)
.+....+..+|+|+|||||++.+|.......+|.+++....|.|... +..+.-.+.|+||+||+|.+.|++||..
T Consensus 41 ~k~~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-----~~sk~~~k~ftFDkVFGpes~Q~d~Y~~ 115 (1041)
T KOG0243|consen 41 SKDHKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-----IASKQIDKTFTFDKVFGPESQQEDLYDQ 115 (1041)
T ss_pred cCCCCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-----cccccccceeecceeeCcchhHHHHHHH
Confidence 33345566899999999999999999999999999755555666543 1122235789999999999999999999
Q ss_pred cchhhHHHHhcCCCccEEEeCCCCCCCccccCC--------------CCccchHHHHHHHhhhccccceeeEEEEEEEec
Q 042351 221 TVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP--------------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYG 286 (716)
Q Consensus 221 ~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G--------------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYn 286 (716)
+|.|+|..|+.|||||||||||||+||||||.| ++||++.+||..+... +..|.|+|||+|+||
T Consensus 116 ~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYN 193 (1041)
T KOG0243|consen 116 AVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYN 193 (1041)
T ss_pred HHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhh
Confidence 999999999999999999999999999999975 7899999999999864 368999999999999
Q ss_pred CeeeecCCCC----CcceeEe-----cCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEE
Q 042351 287 GKVFDLLNDR----KKLCMRE-----DGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLA 357 (716)
Q Consensus 287 e~v~DLL~~~----~~l~ire-----d~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~ 357 (716)
|.|+|||++. +.+.+.. |.+++|+|+||.|+.|+++.|++.+|++|.+.|++++|.||..|||||+||+|+
T Consensus 194 EEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsIt 273 (1041)
T KOG0243|consen 194 EELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSIT 273 (1041)
T ss_pred HHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEE
Confidence 9999999753 2333333 568999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhh
Q 042351 358 IKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 437 (716)
Q Consensus 358 v~~~~~~~~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLq 437 (716)
|........+......|||+||||||||.....++.++ +.+|+..||+||++||+||.||.++..|||||+||||||||
T Consensus 274 vhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~-RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQ 352 (1041)
T KOG0243|consen 274 VHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNG-RAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQ 352 (1041)
T ss_pred EEEecCCCcchhhHhhcccceeeccccccccccccccc-hhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Confidence 97766555555566789999999999999999888877 55699999999999999999999999999999999999999
Q ss_pred hhcCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcccCC
Q 042351 438 DSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRD 484 (716)
Q Consensus 438 dsLgGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~d 484 (716)
|||||.+||+|||||||+..+++|||+||.||.|||+|+|+|.+++.
T Consensus 353 DSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQk 399 (1041)
T KOG0243|consen 353 DSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQK 399 (1041)
T ss_pred HHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchH
Confidence 99999999999999999999999999999999999999999988753
No 4
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=8.9e-77 Score=643.19 Aligned_cols=323 Identities=40% Similarity=0.616 Sum_probs=291.1
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccc-----cccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDL-----TEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 150 ~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~-----t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
+|+||||+||++++|...+...+|.+. +...+.+ .++..... ....+.+.|.||+||+++++|++||+.+++|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~v~~-~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVV-DDRMLVF-DPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEc-CCCEEEE-cCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 699999999999999999999999985 3444444 44332211 2344568999999999999999999999999
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCC-CC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLND-RK 297 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~-~~ 297 (716)
+|+.+++|+|+||||||||||||||||+| +.++++++||..+........|.|+|||+|||||+|+|||++ .+
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~ 158 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSG 158 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCC
Confidence 99999999999999999999999999976 678999999999988666788999999999999999999988 67
Q ss_pred cceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEE
Q 042351 298 KLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLS 377 (716)
Q Consensus 298 ~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~ 377 (716)
.+.+++|++++++|.|++++.|.+++|++++|+.|.++|++++|.+|..|||||+||+|+|.+.....+.......|+|+
T Consensus 159 ~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~ 238 (338)
T cd01370 159 PLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS 238 (338)
T ss_pred CceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999876654444567789999
Q ss_pred EEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC---CCCcCCCChhhHhhhhhcCCCceEEEEEEeCC
Q 042351 378 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGDSRTVMISCISP 454 (716)
Q Consensus 378 fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~---~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP 454 (716)
|||||||||..++.. .+.+..|++.||+||++|++||.+|..++ .|||||+||||+||+|+|||||+|+||+||||
T Consensus 239 ~VDLAGsEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp 317 (338)
T cd01370 239 LIDLAGSERASATNN-RGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISP 317 (338)
T ss_pred EEECCCCccccccCC-CCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCC
Confidence 999999999877664 44566799999999999999999999877 89999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccc
Q 042351 455 SSGSCEHTINTLRYADRVKSL 475 (716)
Q Consensus 455 ~~~~~eeTlsTLrfA~R~k~I 475 (716)
+..+++||++||+||+|||+|
T Consensus 318 ~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 318 SSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred chhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999986
No 5
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-78 Score=687.14 Aligned_cols=332 Identities=34% Similarity=0.529 Sum_probs=293.7
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCC-------CCcHHhhhh
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNED-------VTNEEVYSE 220 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~-------asQeeVy~~ 220 (716)
...|+|+|||||++.+|..+..+.+|.+. ++..++..++.. .+...|+||+.|+.. ++|..||+.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~--gn~ttii~~~~~------k~~~~FtfD~SYWS~d~edPhfAsQ~qVYed 74 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQ--GNTTTIINPKGS------KDAPKFTFDYSYWSHDSEDPHFASQKQVYED 74 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEec--CCceeeecCCCc------ccCCceecceeeecCCCCCCchhhHHHHHHH
Confidence 35899999999999999999888888884 444444333321 123459999999644 789999999
Q ss_pred cchhhHHHHhcCCCccEEEeCCCCCCCccccCC--------CCccchHHHHHHHhh-hccccceeeEEEEEEEecCeeee
Q 042351 221 TVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP--------LPLKASHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFD 291 (716)
Q Consensus 221 ~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G--------l~~~a~~~if~~i~~-~~~~~~~~V~vS~~EIYne~v~D 291 (716)
++.++++++|+|||+||||||||||||||||+| |+|+.+.+||..+.. ......|.|.|||+|||||+|+|
T Consensus 75 lg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrD 154 (1221)
T KOG0245|consen 75 LGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRD 154 (1221)
T ss_pred HhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHH
Confidence 999999999999999999999999999999976 678999999999987 44567899999999999999999
Q ss_pred cCC-C--CCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCC-
Q 042351 292 LLN-D--RKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDS- 367 (716)
Q Consensus 292 LL~-~--~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~- 367 (716)
||+ + +..|++||++.-|+||.+|+.+.|+|..|+..+|..|++.|++++|+||+.|||||+||+|.+.+.....+.
T Consensus 155 LL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~ 234 (1221)
T KOG0245|consen 155 LLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTG 234 (1221)
T ss_pred HhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCC
Confidence 998 4 457999999999999999999999999999999999999999999999999999999999999876433332
Q ss_pred CCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC-------CCCcCCCChhhHhhhhhc
Q 042351 368 KPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-------GHIPFRGSKLTEVLRDSF 440 (716)
Q Consensus 368 ~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~-------~hVPyRdSKLT~LLqdsL 440 (716)
.....+|||+|||||||||...++++ +++.+||+.|||||.+||+||.||+..+ .+||||||.||+|||+.|
T Consensus 235 l~sek~SKIsLVDLAGSERasstGa~-G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnL 313 (1221)
T KOG0245|consen 235 LDSEKVSKISLVDLAGSERASSTGAN-GDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENL 313 (1221)
T ss_pred CcceeeeeeeEEeccCcccccccCCC-ccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhc
Confidence 33567899999999999997766654 5677799999999999999999996532 489999999999999999
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcccCCCCCc
Q 042351 441 VGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRDPLSS 488 (716)
Q Consensus 441 gGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~dp~~~ 488 (716)
||||||+|||+|||++-+|+|||+|||||+|+|+|++++++|+||...
T Consensus 314 GGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK 361 (1221)
T KOG0245|consen 314 GGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK 361 (1221)
T ss_pred CCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH
Confidence 999999999999999999999999999999999999999999999654
No 6
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=8.2e-76 Score=631.80 Aligned_cols=316 Identities=65% Similarity=0.993 Sum_probs=297.1
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHH
Q 042351 149 AKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPL 228 (716)
Q Consensus 149 ~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 228 (716)
.+|+|+|||||+++.|...++.+++.+.+ .+++++++++.+++.....+.+.|.||+||+++++|++||+.+++|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~ 79 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCES-NPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPH 79 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECC-CCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHH
Confidence 48999999999999999888888999864 46899999888888776667889999999999999999999999999999
Q ss_pred HhcCCCccEEEeCCCCCCCccccC------CCCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCCCcceeE
Q 042351 229 IFHRTKATCFAYGQTGSGKTYTMQ------PLPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMR 302 (716)
Q Consensus 229 vl~G~N~tifAYGqTGSGKTyTm~------Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~~~l~ir 302 (716)
+++|+|+||||||||||||||||+ |+.++++.+||..+.... ..|.|+|||+|||+|+++|||++++.+.++
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~ 157 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDRKRLSVL 157 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCccceeEE
Confidence 999999999999999999999998 788999999999987643 679999999999999999999999999999
Q ss_pred ecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEEeCC
Q 042351 303 EDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDLA 382 (716)
Q Consensus 303 ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLA 382 (716)
+++.++++|.|++++.|.+++|++++|..|.++|.++.|.+|..|||||+||+|.|.+... ....|+|+|||||
T Consensus 158 ~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLA 231 (322)
T cd01367 158 EDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLA 231 (322)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------CeeEEEEEEeecC
Confidence 9999999999999999999999999999999999999999999999999999999987643 3467999999999
Q ss_pred CCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCHHHH
Q 042351 383 GSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHT 462 (716)
Q Consensus 383 GSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~eeT 462 (716)
||||..++....+++..|+..||+||++|++||.+|..++.|||||+||||+||||+|+|||+|+||+||||+..+++||
T Consensus 232 GsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eT 311 (322)
T cd01367 232 GSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHT 311 (322)
T ss_pred CccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHH
Confidence 99999888777778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 042351 463 INTLRYADRVK 473 (716)
Q Consensus 463 lsTLrfA~R~k 473 (716)
++||+||+|+|
T Consensus 312 l~tL~fa~r~k 322 (322)
T cd01367 312 LNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHhhC
Confidence 99999999986
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.2e-75 Score=629.16 Aligned_cols=314 Identities=36% Similarity=0.506 Sum_probs=276.1
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHH
Q 042351 149 AKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPL 228 (716)
Q Consensus 149 ~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 228 (716)
++|+|+||+||++..|...+...++.... .+.+.++.. ..+.|.||+||+++++|++||+.+++|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~-~~~~~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~ 69 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLS-SDTLVWHSH----------PPRMFTFDHVADSNTNQEDVFQSVGKPLVED 69 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcC-CCcEEeeCC----------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999998666666776643 334443322 1368999999999999999999999999999
Q ss_pred HhcCCCccEEEeCCCCCCCccccCC--------------CCccchHHHHHHHhhh----ccccceeeEEEEEEEecCeee
Q 042351 229 IFHRTKATCFAYGQTGSGKTYTMQP--------------LPLKASHDILRLMHQM----HRSQGFQLYVSFFEIYGGKVF 290 (716)
Q Consensus 229 vl~G~N~tifAYGqTGSGKTyTm~G--------------l~~~a~~~if~~i~~~----~~~~~~~V~vS~~EIYne~v~ 290 (716)
+++|||+||||||||||||||||+| +.++++++||..+... .....|.|+|||+|||||+||
T Consensus 70 ~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~ 149 (337)
T cd01373 70 CLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQIT 149 (337)
T ss_pred HhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEee
Confidence 9999999999999999999999986 3467788888887653 134578999999999999999
Q ss_pred ecCCCC-CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCC
Q 042351 291 DLLNDR-KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKP 369 (716)
Q Consensus 291 DLL~~~-~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~ 369 (716)
|||++. ..+.+++++.++++|.||+++.|.+++|++++|..|.++|.+++|.+|..|||||+||+|.|.+....... .
T Consensus 150 DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~-~ 228 (337)
T cd01373 150 DLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASS-T 228 (337)
T ss_pred eCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCC-C
Confidence 999875 57999999999999999999999999999999999999999999999999999999999999876443322 2
Q ss_pred ceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhC----CCCCCcCCCChhhHhhhhhcCCCce
Q 042351 370 ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN----DQGHIPFRGSKLTEVLRDSFVGDSR 445 (716)
Q Consensus 370 ~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~----~~~hVPyRdSKLT~LLqdsLgGnsk 445 (716)
....|+|+|||||||||..+++. .+.+..|+..||+||++|++||.+|.. +..|||||+||||+||||+|||||+
T Consensus 229 ~~~~s~l~~VDLAGSEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~ 307 (337)
T cd01373 229 NIRTSRLNLVDLAGSERQKDDGA-EGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAK 307 (337)
T ss_pred cEEEEEEEEEECCCCCcccccCC-ccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCce
Confidence 45679999999999999887764 456677999999999999999999974 4689999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 042351 446 TVMISCISPSSGSCEHTINTLRYADRVKSL 475 (716)
Q Consensus 446 T~mIa~ISP~~~~~eeTlsTLrfA~R~k~I 475 (716)
|+||+||||+..+++||++||+||+|||.|
T Consensus 308 t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 308 TTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999986
No 8
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=7.6e-75 Score=629.66 Aligned_cols=317 Identities=31% Similarity=0.549 Sum_probs=284.5
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccc----cccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 149 AKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDL----TEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 149 ~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~----t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
.+|+||||+||++..|...+...+|.+. +++++.++.+...... ....+.+.|.||+||+++++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p 79 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVI-NSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALP 79 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEc-CCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHH
Confidence 3799999999999999988888888875 6778888887653322 2244678999999999999999999999999
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC--
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR-- 296 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~-- 296 (716)
+|+.+++|+|+||||||||||||||||+| +.++++.+||..+.. |.|+|||+|||||+|||||++.
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~~ 153 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPS 153 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCccc
Confidence 99999999999999999999999999986 678888999988765 8999999999999999999763
Q ss_pred -----CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCC-----
Q 042351 297 -----KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD----- 366 (716)
Q Consensus 297 -----~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~----- 366 (716)
+.+.+++|.+++++|.|++++.|.+++|++++|..|.++|.+++|.+|..|||||+||+|+|.+......
T Consensus 154 ~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~ 233 (345)
T cd01368 154 STKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQ 233 (345)
T ss_pred cccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccccc
Confidence 3689999999999999999999999999999999999999999999999999999999999987654321
Q ss_pred CCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhC------CCCCCcCCCChhhHhhhhhc
Q 042351 367 SKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN------DQGHIPFRGSKLTEVLRDSF 440 (716)
Q Consensus 367 ~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~------~~~hVPyRdSKLT~LLqdsL 440 (716)
.......|+|+|||||||||..++.. .+.+..|+..||+||++|++||++|.+ +..|||||+||||+||+|+|
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~-~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l 312 (345)
T cd01368 234 DKDQITVSQLSLVDLAGSERTSRTQN-TGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYF 312 (345)
T ss_pred CCCceEEEEEEEEecccccccccccc-cchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhc
Confidence 12345789999999999999888754 456677999999999999999999976 56899999999999999999
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 042351 441 VGDSRTVMISCISPSSGSCEHTINTLRYADRVK 473 (716)
Q Consensus 441 gGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k 473 (716)
+|||+|+||+||||+..+++||++||+||.+++
T Consensus 313 ~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 313 DGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999985
No 9
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1e-75 Score=640.13 Aligned_cols=324 Identities=39% Similarity=0.550 Sum_probs=295.4
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
..++|+|+||+||++..|...+...+..+.+..+++.+...+ +...|.||+||.++++|++||+.++.|+|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~---------~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv 75 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTK---------ETKTYVFDRVFSPNATQEDVYEFAAKPIV 75 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEeccc---------ccccceeeeecCCCccHHHHHHHHHHHHH
Confidence 568999999999999999998888888776545555544332 33689999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC---------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC-
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP---------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR- 296 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G---------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~- 296 (716)
++||.|||+||||||||||||||||.| +.|+.+.+||..|........|.|+|||||||+|+++|||++.
T Consensus 76 ~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k 155 (607)
T KOG0240|consen 76 DDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK 155 (607)
T ss_pred HHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc
Confidence 999999999999999999999999964 6788999999999998888899999999999999999999975
Q ss_pred CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEE
Q 042351 297 KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKL 376 (716)
Q Consensus 297 ~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL 376 (716)
..+.+.+|.+..++|+|+++..|.++++++++|+.|..+|.++.|+||.+|||||+||+|+|++.+... ...+.|||
T Consensus 156 ~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~---~~~~~gkL 232 (607)
T KOG0240|consen 156 TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED---KRKLSGKL 232 (607)
T ss_pred CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc---hhhccccE
Confidence 479999999999999999999999999999999999999999999999999999999999999875433 34678999
Q ss_pred EEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCC-CCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCC
Q 042351 377 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPS 455 (716)
Q Consensus 377 ~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~-~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~ 455 (716)
+||||||||+..++++.+ ....|++.||+||.|||+||+||+.+ ..|||||||||||||||+|||||||++|.|+||+
T Consensus 233 yLVDLaGSEkvsKtga~g-~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPs 311 (607)
T KOG0240|consen 233 YLVDLAGSEKVSKTGAEG-AVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPS 311 (607)
T ss_pred EEEEcccccccCCCCccc-hhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCc
Confidence 999999999998887654 55669999999999999999999987 8899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccccCCcccC
Q 042351 456 SGSCEHTINTLRYADRVKSLSKGNISKR 483 (716)
Q Consensus 456 ~~~~eeTlsTLrfA~R~k~I~~~~~~~~ 483 (716)
..+..||.+||+|+.|+|.|++...++.
T Consensus 312 s~n~~ET~STl~fg~rak~ikN~v~~n~ 339 (607)
T KOG0240|consen 312 SLNEAETKSTLRFGNRAKTIKNTVWVNL 339 (607)
T ss_pred cccccccccchhhccccccccchhhhhh
Confidence 9999999999999999999998776654
No 10
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.4e-74 Score=671.07 Aligned_cols=321 Identities=34% Similarity=0.516 Sum_probs=279.8
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhh
Q 042351 146 NNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPI 225 (716)
Q Consensus 146 ~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pL 225 (716)
....+|+|||||||++..|. +...++.+ .++.+.+. .+.|.||+||+++++|++||+.++.||
T Consensus 95 ~~ds~VkV~VRVRPl~~~E~--g~~iV~~~--s~dsl~I~-------------~qtFtFD~VFdp~aTQedVFe~vv~PL 157 (1320)
T PLN03188 95 VSDSGVKVIVRMKPLNKGEE--GEMIVQKM--SNDSLTIN-------------GQTFTFDSIADPESTQEDIFQLVGAPL 157 (1320)
T ss_pred CCCCCeEEEEEcCCCCCccC--CCeeEEEc--CCCeEEEe-------------CcEEeCCeeeCCCCCHHHHHHHHHHHH
Confidence 44679999999999998753 33222222 44555543 357999999999999999999999999
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccCC----------------CCccchHHHHHHHhhh-----ccccceeeEEEEEEE
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQP----------------LPLKASHDILRLMHQM-----HRSQGFQLYVSFFEI 284 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~G----------------l~~~a~~~if~~i~~~-----~~~~~~~V~vS~~EI 284 (716)
|+.+++|||+||||||||||||||||+| ++++++.+||..+... .....|.|+|||+||
T Consensus 158 V~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEI 237 (1320)
T PLN03188 158 VENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEI 237 (1320)
T ss_pred HHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEee
Confidence 9999999999999999999999999976 5578889999988642 234579999999999
Q ss_pred ecCeeeecCCCC-CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeC
Q 042351 285 YGGKVFDLLNDR-KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSAD 363 (716)
Q Consensus 285 Yne~v~DLL~~~-~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~ 363 (716)
|||+|||||++. +.+.|++|.+++++|.||+++.|.++++++++|..|.++|++++|.+|..|||||+||+|.|.+...
T Consensus 238 YNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k 317 (1320)
T PLN03188 238 YNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317 (1320)
T ss_pred ecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeec
Confidence 999999999875 5799999999999999999999999999999999999999999999999999999999999986532
Q ss_pred C-CCCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhC-----CCCCCcCCCChhhHhhh
Q 042351 364 G-SDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN-----DQGHIPFRGSKLTEVLR 437 (716)
Q Consensus 364 ~-~~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~-----~~~hVPyRdSKLT~LLq 437 (716)
. .+.......|+|+|||||||||...++.. +.+..|++.||+||++|++||.+|.. +..|||||+||||+|||
T Consensus 318 ~~~dg~ss~r~SkLnLVDLAGSER~kkTga~-G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQ 396 (1320)
T PLN03188 318 SVADGLSSFKTSRINLVDLAGSERQKLTGAA-GDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQ 396 (1320)
T ss_pred ccCCCCcceEEEEEEEEECCCchhccccCcc-cHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHH
Confidence 2 12223456799999999999998877644 45667999999999999999999974 45799999999999999
Q ss_pred hhcCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcccCC
Q 042351 438 DSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRD 484 (716)
Q Consensus 438 dsLgGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~d 484 (716)
|+|||||+|+|||||||+..+++||++||+||+|||.|++.+.++..
T Consensus 397 DSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~ 443 (1320)
T PLN03188 397 ESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1320)
T ss_pred HhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence 99999999999999999999999999999999999999999988765
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=4.1e-73 Score=618.64 Aligned_cols=328 Identities=33% Similarity=0.520 Sum_probs=293.5
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCC-------CCcHHhhhhc
Q 042351 149 AKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNED-------VTNEEVYSET 221 (716)
Q Consensus 149 ~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~-------asQeeVy~~~ 221 (716)
++|+|+||+||++..|...++..++.+.+ +.+++..+.... ....+...|.||+||+++ ++|++||+.+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~v~v~~~~~~~--~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~ 76 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG--KVTTLKNPKAAD--ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDL 76 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC--CEEEEEcCCccc--ccccCceEEECCeEecccCCCCCCCCCHHHHHHHH
Confidence 48999999999999999999988888853 778887765321 223456789999999999 9999999999
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhcc-ccceeeEEEEEEEecCeeeecCC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHR-SQGFQLYVSFFEIYGGKVFDLLN 294 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~-~~~~~V~vS~~EIYne~v~DLL~ 294 (716)
+.|+|+.+++|+|+||||||||||||||||+| +.++++.+||..+..... ...|.|+|||+|||+|+|||||+
T Consensus 77 ~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 77 GRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred HHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCC
Confidence 99999999999999999999999999999985 678999999999887433 56899999999999999999998
Q ss_pred CC----CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCC-CCC
Q 042351 295 DR----KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD-SKP 369 (716)
Q Consensus 295 ~~----~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-~~~ 369 (716)
+. ..+.++++..++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+...... ...
T Consensus 157 ~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~ 236 (356)
T cd01365 157 PKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLT 236 (356)
T ss_pred CCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCC
Confidence 76 4789999999999999999999999999999999999999999999999999999999999987654321 234
Q ss_pred ceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCC--------CCCCcCCCChhhHhhhhhcC
Q 042351 370 ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND--------QGHIPFRGSKLTEVLRDSFV 441 (716)
Q Consensus 370 ~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~--------~~hVPyRdSKLT~LLqdsLg 441 (716)
....|+|+|||||||||..+++.. +.+..|+..||+||++|++||.+|... +.|||||+||||+||+|+|+
T Consensus 237 ~~~~s~l~~VDLAGsEr~~~~~~~-~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lg 315 (356)
T cd01365 237 TEKVSKISLVDLAGSERASSTGAE-GDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLG 315 (356)
T ss_pred ceEEEEEEeeeccccccccccccc-chhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcC
Confidence 567899999999999998887644 556679999999999999999999753 58999999999999999999
Q ss_pred CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcc
Q 042351 442 GDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNIS 481 (716)
Q Consensus 442 GnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~ 481 (716)
|||+|+||+||||...+++||++||+||.|+++|++.|.+
T Consensus 316 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 316 GNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 9999999999999999999999999999999999998764
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.2e-72 Score=614.21 Aligned_cols=328 Identities=36% Similarity=0.541 Sum_probs=293.9
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHH
Q 042351 149 AKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPL 228 (716)
Q Consensus 149 ~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 228 (716)
.+|+|+||+||+...|...+...++.+...++.+.+..+.. .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~ 76 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDE 76 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----ccccceeEeccccCCCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999998888889999976667777765421 2234578999999999999999999999999999
Q ss_pred HhcCCCccEEEeCCCCCCCccccCC-----------------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeee
Q 042351 229 IFHRTKATCFAYGQTGSGKTYTMQP-----------------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFD 291 (716)
Q Consensus 229 vl~G~N~tifAYGqTGSGKTyTm~G-----------------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~D 291 (716)
+++|+|+||||||||||||||||+| +.++++.+||..+... ...|.|+|||+|||+|+|+|
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~D 154 (352)
T cd01364 77 VLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFD 154 (352)
T ss_pred HhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeee
Confidence 9999999999999999999999976 4466778888887764 56799999999999999999
Q ss_pred cCCCC----CcceeEec--CCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCC
Q 042351 292 LLNDR----KKLCMRED--GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGS 365 (716)
Q Consensus 292 LL~~~----~~l~ired--~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 365 (716)
||++. +++.++++ ..++++|.|++++.|.+++|++++|..|.++|.+++|.+|..|||||+||+|.|.+.....
T Consensus 155 LL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~ 234 (352)
T cd01364 155 LLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTI 234 (352)
T ss_pred CCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCC
Confidence 99864 57899999 6899999999999999999999999999999999999999999999999999998875543
Q ss_pred CCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCce
Q 042351 366 DSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSR 445 (716)
Q Consensus 366 ~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnsk 445 (716)
........|+|+||||||+|+..+.+.. +.+..|+..||+||.+|++||.+|..++.|||||+||||+||+|+|||||+
T Consensus 235 ~~~~~~~~s~l~~VDLAGsE~~~~~~~~-~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~ 313 (352)
T cd01364 235 SGEELVKIGKLNLVDLAGSENIGRSGAE-NKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTK 313 (352)
T ss_pred CCCccEEEEEEEEEECCCccccccccCc-chhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCce
Confidence 3334456799999999999998776554 456669999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcccCC
Q 042351 446 TVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRD 484 (716)
Q Consensus 446 T~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~d 484 (716)
|+||+||||+..+++||++||+||.|+++|++.|.++.+
T Consensus 314 t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 314 TSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 999999999999999999999999999999999988754
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.5e-72 Score=609.03 Aligned_cols=321 Identities=40% Similarity=0.605 Sum_probs=292.2
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHH
Q 042351 149 AKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPL 228 (716)
Q Consensus 149 ~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 228 (716)
.+|+|+||+||++..|...+...++.+++....+.++.+... .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~ 76 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD----AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDS 76 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc----ccCCCceeeeccccCCCccHHHHHHHHHHHHHHH
Confidence 379999999999999999888999999888899999887542 1234678999999999999999999999999999
Q ss_pred HhcCCCccEEEeCCCCCCCccccCC---------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCCC--
Q 042351 229 IFHRTKATCFAYGQTGSGKTYTMQP---------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRK-- 297 (716)
Q Consensus 229 vl~G~N~tifAYGqTGSGKTyTm~G---------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~~-- 297 (716)
+++|+|+||||||||||||||||+| +.++++.+||..+.... ...|.|+|||+|||+|+|+|||++..
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 155 (333)
T cd01371 77 VLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQKK 155 (333)
T ss_pred HhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCCCC
Confidence 9999999999999999999999986 56788899998887643 36799999999999999999998754
Q ss_pred cceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEE
Q 042351 298 KLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLS 377 (716)
Q Consensus 298 ~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~ 377 (716)
.+.+++++.++++|.|++++.|.+++|+..+|..|.++|.++.|.+|..|||||+||+|+|++.............|+|+
T Consensus 156 ~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~ 235 (333)
T cd01371 156 KLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLN 235 (333)
T ss_pred ceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999876554344456789999
Q ss_pred EEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCC-CCcCCCChhhHhhhhhcCCCceEEEEEEeCCCC
Q 042351 378 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG-HIPFRGSKLTEVLRDSFVGDSRTVMISCISPSS 456 (716)
Q Consensus 378 fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~-hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~ 456 (716)
|||||||||..+++. .+.+..|+..||+||.+|++||++|.+++. |||||+||||+||+|+|+|||+|+||+||+|..
T Consensus 236 ~VDLAGsEr~~~~~~-~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~ 314 (333)
T cd01371 236 LVDLAGSERQSKTGA-TGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPAD 314 (333)
T ss_pred EEECCCCCcccccCC-chhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCcc
Confidence 999999999877664 455667999999999999999999998775 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 042351 457 GSCEHTINTLRYADRVKSL 475 (716)
Q Consensus 457 ~~~eeTlsTLrfA~R~k~I 475 (716)
.+++||++||+||+|+|+|
T Consensus 315 ~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 315 YNYDETLSTLRYANRAKNI 333 (333)
T ss_pred ccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999986
No 14
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-74 Score=661.92 Aligned_cols=327 Identities=41% Similarity=0.583 Sum_probs=285.5
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHH
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVP 227 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~ 227 (716)
..+|.|+||+||++.+|...+....+.+. .+..+.........+.. ....|.||+||+++++|++||+.+++|||.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~---~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~ 80 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCI-NDTTLFKRVTKSLPEKS---KPEKYEFDRVFGEESTQEDVYERTTKPLLL 80 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEec-CCceeEeeccccccccc---cccceeeeeecCCCCCHHHHHHhccHHHHH
Confidence 35899999999999987666666666553 22233222111111111 146899999999999999999999999999
Q ss_pred HHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCCCc-ce
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKK-LC 300 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~~~-l~ 300 (716)
++++|+|+||||||||||||||||.| +.+.+..+||..|.... ...|.|.|||+|||||.|+|||++... +.
T Consensus 81 ~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~ 159 (675)
T KOG0242|consen 81 SVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGDLR 159 (675)
T ss_pred HHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCCce
Confidence 99999999999999999999999987 45789999999998855 788999999999999999999998754 99
Q ss_pred eEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEEe
Q 042351 301 MREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFID 380 (716)
Q Consensus 301 ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVD 380 (716)
++||+.++++|.||++..|.|.++++.+|..|+++|+++.|.+|..|||||+||+|.|........ . ..|+|+|||
T Consensus 160 irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~---~-~~s~L~lID 235 (675)
T KOG0242|consen 160 LREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS---S-RVSKLNLID 235 (675)
T ss_pred EeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc---c-hhheehhhh
Confidence 999999999999999999999999999999999999999999999999999999999988754433 1 679999999
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCC--CCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCC
Q 042351 381 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND--QGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGS 458 (716)
Q Consensus 381 LAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~--~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~ 458 (716)
||||||...++.. +.+++||++||+||++||+||++|..+ ..||||||||||||||++|||||+|+|||||+|+..+
T Consensus 236 LAGSERas~T~~~-G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~ 314 (675)
T KOG0242|consen 236 LAGSERASRTGNE-GVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSH 314 (675)
T ss_pred hhhhhhhhhhhcc-ceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhH
Confidence 9999998777655 455679999999999999999999876 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcccCC
Q 042351 459 CEHTINTLRYADRVKSLSKGNISKRD 484 (716)
Q Consensus 459 ~eeTlsTLrfA~R~k~I~~~~~~~~d 484 (716)
++||.+||+||+|+|+|++.+..+.-
T Consensus 315 ~~eT~nTL~fAsrak~i~~~~~~n~~ 340 (675)
T KOG0242|consen 315 YEETKNTLKFASRAKEITTKAQVNVI 340 (675)
T ss_pred HHHHHHHHHHHHHhhhccccccccee
Confidence 99999999999999999988766643
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.7e-71 Score=598.05 Aligned_cols=312 Identities=42% Similarity=0.633 Sum_probs=284.4
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHHH
Q 042351 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPLI 229 (716)
Q Consensus 150 ~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 229 (716)
+|+|+||+||++..|. .++.+++.+.. ++.+++.++ ...+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~-~~~v~~~~~---------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~ 69 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDN-DNTISLEES---------TPGQSFTFDRVFGGESTNREVYERIAKPVVRSA 69 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECC-CCEEEEcCC---------CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999987 45667888863 457776654 235789999999999999999999999999999
Q ss_pred hcCCCccEEEeCCCCCCCccccC------CCCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC-CcceeE
Q 042351 230 FHRTKATCFAYGQTGSGKTYTMQ------PLPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR-KKLCMR 302 (716)
Q Consensus 230 l~G~N~tifAYGqTGSGKTyTm~------Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~-~~l~ir 302 (716)
++|+|+||||||||||||||||+ |+.++++.+||..+.... ...|.|+|||+|||+|+|||||++. +.+.++
T Consensus 70 l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~ 148 (321)
T cd01374 70 LEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSPQELRIR 148 (321)
T ss_pred HCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCCCCceEE
Confidence 99999999999999999999998 578899999999987643 5689999999999999999999987 789999
Q ss_pred ecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEEeCC
Q 042351 303 EDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDLA 382 (716)
Q Consensus 303 ed~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLA 382 (716)
+++.++++|.|++++.|.+++|+..+|..|.++|..+.|.+|..|||||+||+|+|.+.............|+|+|||||
T Consensus 149 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLA 228 (321)
T cd01374 149 EDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLA 228 (321)
T ss_pred ECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999987655433345678999999999
Q ss_pred CCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC--CCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCHH
Q 042351 383 GSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCE 460 (716)
Q Consensus 383 GSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~--~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~e 460 (716)
|+||..+.+ .+.+..|+..||+||.+|++||++|.+++ .|||||+||||+||+|+|+|||+|+||+||||...+++
T Consensus 229 GsE~~~~~~--~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~ 306 (321)
T cd01374 229 GSERASQTG--AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVE 306 (321)
T ss_pred CCCccccCC--CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 999988776 45667799999999999999999999885 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 042351 461 HTINTLRYADRVKSL 475 (716)
Q Consensus 461 eTlsTLrfA~R~k~I 475 (716)
||++||+||+|+|+|
T Consensus 307 eTl~TL~~a~r~~~i 321 (321)
T cd01374 307 ETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 16
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.3e-71 Score=600.23 Aligned_cols=314 Identities=40% Similarity=0.647 Sum_probs=286.5
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHHH
Q 042351 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPLI 229 (716)
Q Consensus 150 ~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 229 (716)
.|+|+||+||+.+.|...+...++.+.+.+..+++.. .+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 69 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGL 69 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------CcEEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999998888888888887777777653 3579999999999999999999999999999
Q ss_pred hcCCCccEEEeCCCCCCCccccCC------------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC-
Q 042351 230 FHRTKATCFAYGQTGSGKTYTMQP------------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR- 296 (716)
Q Consensus 230 l~G~N~tifAYGqTGSGKTyTm~G------------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~- 296 (716)
++|+|+||||||||||||||||+| ++++++.+||..+........|.|+|||+|||+|+|+|||++.
T Consensus 70 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 149 (341)
T cd01372 70 FEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST 149 (341)
T ss_pred hCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc
Confidence 999999999999999999999976 5678899999999886666789999999999999999999864
Q ss_pred ---CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCC-------C
Q 042351 297 ---KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGS-------D 366 (716)
Q Consensus 297 ---~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~-------~ 366 (716)
..+.++++++++++|.|++++.|.+++|++.+|..|.++|..++|.+|..|||||+||+|.|.+..... +
T Consensus 150 ~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~ 229 (341)
T cd01372 150 SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGD 229 (341)
T ss_pred cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccccccc
Confidence 579999999999999999999999999999999999999999999999999999999999998876531 1
Q ss_pred CCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC---CCCcCCCChhhHhhhhhcCCC
Q 042351 367 SKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGD 443 (716)
Q Consensus 367 ~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~---~hVPyRdSKLT~LLqdsLgGn 443 (716)
.......|+|+||||||+|+..++.. .+.+..|+..||+||.+|++||++|..++ .|||||+||||+||+|+||||
T Consensus 230 ~~~~~~~s~l~~VDLAGsE~~~~~~~-~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~ 308 (341)
T cd01372 230 DKNSTLTSKFHFVDLAGSERLKKTGA-TGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGN 308 (341)
T ss_pred CCCceeeEEEEEEECCCCcccccccC-chhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCC
Confidence 23456789999999999999877654 45566799999999999999999998876 799999999999999999999
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc
Q 042351 444 SRTVMISCISPSSGSCEHTINTLRYADRVKSLS 476 (716)
Q Consensus 444 skT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~ 476 (716)
++|+||+||||...+++|||+||+||+|+|+|+
T Consensus 309 s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 309 SHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred ceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999985
No 17
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.7e-71 Score=597.66 Aligned_cols=315 Identities=34% Similarity=0.520 Sum_probs=282.6
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccc--cccccceEEEeceecCCCCCcHHhhhhcchhhHH
Q 042351 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDL--TEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVP 227 (716)
Q Consensus 150 ~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~--t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~ 227 (716)
.|||+||+||+...+ ...+.+.+++..++++.|+..... ....+.+.|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQ-----GSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCC-----CccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 589999999998733 234667778889999888875543 34557789999999999 9999999999999999
Q ss_pred HHhcCCCccEEEeCCCCCCCccccCC---------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC--
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTMQP---------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR-- 296 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm~G---------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~-- 296 (716)
.+++|+|+||||||||||||||||+| +.++++.+||..+.. ..+..|.|+|||+|||+|+|||||++.
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~-~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~ 153 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAM-RATKTYTVHVSYLEIYNEQLYDLLGDTPE 153 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHh-ccCcceEEEEEEEEEECCEeecCCCCCcc
Confidence 99999999999999999999999975 667889999998876 345679999999999999999999876
Q ss_pred -----CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCce
Q 042351 297 -----KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPAR 371 (716)
Q Consensus 297 -----~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~ 371 (716)
+.+.+++|+.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... ....
T Consensus 154 ~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~-~~~~ 232 (334)
T cd01375 154 ALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG-SEVV 232 (334)
T ss_pred ccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC-CCce
Confidence 5689999999999999999999999999999999999999999999999999999999999998743332 2356
Q ss_pred eEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC-CCCcCCCChhhHhhhhhcCCCceEEEEE
Q 042351 372 LVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-GHIPFRGSKLTEVLRDSFVGDSRTVMIS 450 (716)
Q Consensus 372 ~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~-~hVPyRdSKLT~LLqdsLgGnskT~mIa 450 (716)
..|+|+|||||||||..+++. .+....|+..||+||++|++||.+|.+++ .|||||+||||+||+|+|+|||+|+||+
T Consensus 233 ~~s~l~~VDLAGsEr~~~~~~-~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~ 311 (334)
T cd01375 233 RLSKLNLVDLAGSERVSKTGV-SGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLA 311 (334)
T ss_pred EEEEEEEEECCCCCccccccC-chhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 789999999999999877654 44566799999999999999999999988 9999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhc
Q 042351 451 CISPSSGSCEHTINTLRYADRVK 473 (716)
Q Consensus 451 ~ISP~~~~~eeTlsTLrfA~R~k 473 (716)
||||+..+++|||+||+||+|++
T Consensus 312 ~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 312 TIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999985
No 18
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=7e-71 Score=594.10 Aligned_cols=313 Identities=40% Similarity=0.606 Sum_probs=285.0
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHH
Q 042351 149 AKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPL 228 (716)
Q Consensus 149 ~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 228 (716)
.+|+|+||+||++..|...+...+|.+. +..++++.++ .+.+.|.||+||+++++|++||+.+++|+|+.
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~-~~~~v~~~~~---------~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~ 71 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFP-GEDTVSIAGS---------DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDD 71 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEc-CCCEEEecCC---------CCceEEEcCeEECCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999888888888885 4567777754 24578999999999999999999999999999
Q ss_pred HhcCCCccEEEeCCCCCCCccccCC---------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC-Cc
Q 042351 229 IFHRTKATCFAYGQTGSGKTYTMQP---------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR-KK 298 (716)
Q Consensus 229 vl~G~N~tifAYGqTGSGKTyTm~G---------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~-~~ 298 (716)
+++|+|+||||||||||||||||+| +.++++.+||..+........|.|++||+|||+|+++|||++. ..
T Consensus 72 ~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 151 (325)
T cd01369 72 VLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDN 151 (325)
T ss_pred HHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCC
Confidence 9999999999999999999999976 5568899999998876666789999999999999999999874 57
Q ss_pred ceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEE
Q 042351 299 LCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSF 378 (716)
Q Consensus 299 l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~f 378 (716)
+.++++..++++|.|++++.|.|++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+..... .....|+|+|
T Consensus 152 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~s~l~~ 228 (325)
T cd01369 152 LQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET---GSKKRGKLFL 228 (325)
T ss_pred ceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC---CCEEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999998764322 3457899999
Q ss_pred EeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC-CCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCC
Q 042351 379 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-GHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSG 457 (716)
Q Consensus 379 VDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~-~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~ 457 (716)
|||||+|+..+++. .+.+..|+..||+||.+|++||.+|.+++ .|||||+||||+||+|+|+|+|+|+||+||||+..
T Consensus 229 VDLAGsE~~~~~~~-~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~ 307 (325)
T cd01369 229 VDLAGSEKVSKTGA-EGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSY 307 (325)
T ss_pred EECCCCCcccccCC-cchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccc
Confidence 99999999776544 45566799999999999999999999887 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc
Q 042351 458 SCEHTINTLRYADRVKSL 475 (716)
Q Consensus 458 ~~eeTlsTLrfA~R~k~I 475 (716)
+++||++||+||+|+|+|
T Consensus 308 ~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 308 NESETLSTLRFGARAKTI 325 (325)
T ss_pred cHHHHHHHHHHHHHhhcC
Confidence 999999999999999986
No 19
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.7e-70 Score=589.79 Aligned_cols=308 Identities=35% Similarity=0.551 Sum_probs=274.4
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEeCCC----CEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhh
Q 042351 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHS----NYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPI 225 (716)
Q Consensus 150 ~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~----~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pL 225 (716)
+|+|+||+||+...|. +...++.+.... ..+.+..+.. ..+.+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~------~~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 72 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRN------RGETKKYQFDAFYGTECTQEDIFSREVKPI 72 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCC------CCCccEEecCeEECCCCCHHHHHHHHHHHH
Confidence 6899999999998883 344555553221 3566665531 234678999999999999999999999999
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccC------CCCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCC-CCc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQ------PLPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLND-RKK 298 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~------Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~-~~~ 298 (716)
|+.+++|+|+||||||||||||||||+ |+.++++.+||..+... ...+.|+|||+|||+|+|+|||++ ...
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 150 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKKE 150 (319)
T ss_pred HHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCCCC
Confidence 999999999999999999999999997 57889999999887653 367999999999999999999987 568
Q ss_pred ceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEE
Q 042351 299 LCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSF 378 (716)
Q Consensus 299 l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~f 378 (716)
+.+++++.++++|.|++++.|.+++|+.+++..|.++|.+++|.+|..|||||+||+|.|.+.... ....|+|+|
T Consensus 151 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~ 225 (319)
T cd01376 151 LPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNL 225 (319)
T ss_pred ceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----ceEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999876332 256899999
Q ss_pred EeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCC
Q 042351 379 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGS 458 (716)
Q Consensus 379 VDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~ 458 (716)
||||||||..+++. .+.+..|+..||+||++|++||.+|..+..|||||+||||+||+|+|+|||+|+||+||||...+
T Consensus 226 VDLAGsE~~~~~~~-~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~ 304 (319)
T cd01376 226 IDLAGSEDNRRTGN-EGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSF 304 (319)
T ss_pred EECCCCCcccccCC-ccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhh
Confidence 99999999766654 45566799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 042351 459 CEHTINTLRYADRVK 473 (716)
Q Consensus 459 ~eeTlsTLrfA~R~k 473 (716)
++|||+||+||+|+|
T Consensus 305 ~~eTl~TL~fa~r~~ 319 (319)
T cd01376 305 YQDTLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999986
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-71 Score=620.22 Aligned_cols=339 Identities=36% Similarity=0.535 Sum_probs=300.5
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCC-------CCcHHhhhh
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNED-------VTNEEVYSE 220 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~-------asQeeVy~~ 220 (716)
..+|||+|||||++.+|+....+++|.++.+...++...++.+ +......++|.||++|.+. +.|+.||+.
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~--~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~ 80 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHK--IGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKC 80 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCcccc--ccccCCCceeecccccccCCccccccccchhHHHh
Confidence 4699999999999999999999999999654444444333333 3333557899999999654 689999999
Q ss_pred cchhhHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhh-hccccceeeEEEEEEEecCeeeecC
Q 042351 221 TVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFDLL 293 (716)
Q Consensus 221 ~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~-~~~~~~~~V~vS~~EIYne~v~DLL 293 (716)
+..-+|+.+|+|||+||||||||||||||||+| ++|+.+..||..|.. ......|.|.|||+|||||++||||
T Consensus 81 lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLL 160 (1714)
T KOG0241|consen 81 LGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLL 160 (1714)
T ss_pred cchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhh
Confidence 999999999999999999999999999999985 788999999999987 4556789999999999999999999
Q ss_pred CCC---CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEee-CCCCCCC
Q 042351 294 NDR---KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSA-DGSDSKP 369 (716)
Q Consensus 294 ~~~---~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~-~~~~~~~ 369 (716)
+++ +.++++++.-.|.+|.||++..|+|++|+..++..|+++|++++|+||..|||||+||.|.|.+.- +......
T Consensus 161 dPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~S 240 (1714)
T KOG0241|consen 161 DPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHS 240 (1714)
T ss_pred CCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcc
Confidence 875 469999999999999999999999999999999999999999999999999999999999998763 2223334
Q ss_pred ceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhC------CCCCCcCCCChhhHhhhhhcCCC
Q 042351 370 ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN------DQGHIPFRGSKLTEVLRDSFVGD 443 (716)
Q Consensus 370 ~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~------~~~hVPyRdSKLT~LLqdsLgGn 443 (716)
...+|||++||||||||+.++++.+. +.+||.+||+||.+||.||.||+. +.++||||||.||+||||+||||
T Consensus 241 geKvsklslVDLAgserasktga~g~-rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGN 319 (1714)
T KOG0241|consen 241 GEKVSKLSLVDLAGSERASKTGAAGS-RLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGN 319 (1714)
T ss_pred hhheeeeeEEEeccccccccccchhh-hhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCC
Confidence 55689999999999999999887654 556999999999999999999964 24699999999999999999999
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcccCCCCCcc
Q 042351 444 SRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRDPLSSS 489 (716)
Q Consensus 444 skT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~dp~~~~ 489 (716)
|+|+||+||||++.+|+|||+|||||+|+|.|+|+.+++.||....
T Consensus 320 srTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarv 365 (1714)
T KOG0241|consen 320 SRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARV 365 (1714)
T ss_pred ceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHH
Confidence 9999999999999999999999999999999999999999997653
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.6e-69 Score=581.58 Aligned_cols=317 Identities=35% Similarity=0.551 Sum_probs=284.3
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCCC-CEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPHS-NYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~-~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
.++|+|+||+||+.+.|. .....++.+.... ..+.+.+. ..+.+.|.||+||+++++|++||+. +.|+|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v 70 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--------TGKKKSFSFDRVFDPDASQEDVFEE-VSPLV 70 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--------CCCceEEecCEEECCCCCHHHHHHH-HHHHH
Confidence 378999999999999886 4556677776443 55555443 1346789999999999999999998 69999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhcc-ccceeeEEEEEEEecCeeeecCCC----
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHR-SQGFQLYVSFFEIYGGKVFDLLND---- 295 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~-~~~~~V~vS~~EIYne~v~DLL~~---- 295 (716)
+.+++|+|+||||||+|||||||||+| +.++++.+||..+..... ...|.|++||+|||+|+++|||++
T Consensus 71 ~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 150 (329)
T cd01366 71 QSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAP 150 (329)
T ss_pred HHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCC
Confidence 999999999999999999999999976 688999999999987543 678999999999999999999987
Q ss_pred CCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEE
Q 042351 296 RKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGK 375 (716)
Q Consensus 296 ~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~sk 375 (716)
++.+.+++++.++++|.|++++.|.+++|+.++|..|.++|.++.|.+|..|||||+||+|+|.+.... ......|+
T Consensus 151 ~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~ 227 (329)
T cd01366 151 KKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGK 227 (329)
T ss_pred CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC---CCcEEEEE
Confidence 467999999999999999999999999999999999999999999999999999999999999886543 23567899
Q ss_pred EEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCC
Q 042351 376 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPS 455 (716)
Q Consensus 376 L~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~ 455 (716)
|+||||||+|+..+.... +.+..|+..||+||.+|++||.+|..+..|||||+||||+||+|+|+|+++|+||+||||.
T Consensus 228 l~~VDLaGsE~~~~~~~~-~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~ 306 (329)
T cd01366 228 LNLVDLAGSERLKKSGAT-GDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPL 306 (329)
T ss_pred EEEEECCCCccccccccc-chhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCc
Confidence 999999999998876544 4555699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccccC
Q 042351 456 SGSCEHTINTLRYADRVKSLSKG 478 (716)
Q Consensus 456 ~~~~eeTlsTLrfA~R~k~I~~~ 478 (716)
..+++||++||+||+|+++|+++
T Consensus 307 ~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 307 ESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred hhhHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999764
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.4e-66 Score=560.46 Aligned_cols=316 Identities=42% Similarity=0.642 Sum_probs=285.0
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHHH
Q 042351 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPLI 229 (716)
Q Consensus 150 ~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 229 (716)
+|+|+||+||+...| ..+...++.+. +.+.+.+.+++.. ...+.+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~-~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~ 74 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVD-DNKTVTLTPPKDG----RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESV 74 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEEC-CCCEEEEecCccc----cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHH
Confidence 689999999999877 44567788885 3477888876532 23456899999999999999999999999999999
Q ss_pred hcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhcc-ccceeeEEEEEEEecCeeeecCCC---CCcc
Q 042351 230 FHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHR-SQGFQLYVSFFEIYGGKVFDLLND---RKKL 299 (716)
Q Consensus 230 l~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~-~~~~~V~vS~~EIYne~v~DLL~~---~~~l 299 (716)
++|+|+||||||+|||||||||+| +.++++.+||..+..... ...+.|++||+|||+|+|+|||++ ...+
T Consensus 75 ~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l 154 (328)
T cd00106 75 LEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPL 154 (328)
T ss_pred hCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCc
Confidence 999999999999999999999998 788999999999887433 567999999999999999999987 6789
Q ss_pred eeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEE
Q 042351 300 CMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFI 379 (716)
Q Consensus 300 ~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fV 379 (716)
.+++|+++++++.|++++.|.|++|++++|..|.++|.++.|..|..|||||+||+|+|.+........ ....|+|+||
T Consensus 155 ~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~V 233 (328)
T cd00106 155 SLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNLV 233 (328)
T ss_pred EEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999998875443221 3678999999
Q ss_pred eCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC--CCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCC
Q 042351 380 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSG 457 (716)
Q Consensus 380 DLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~--~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~ 457 (716)
||||+|+..+.+ ..+....|++.||+||.+|++||.+|..++ .|||||+||||+||||+|+|+++|+||+||||...
T Consensus 234 DLaGse~~~~~~-~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~ 312 (328)
T cd00106 234 DLAGSERAKKTG-AEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSE 312 (328)
T ss_pred ECCCCCcccccC-CchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchh
Confidence 999999987765 455667799999999999999999999988 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 042351 458 SCEHTINTLRYADRVK 473 (716)
Q Consensus 458 ~~eeTlsTLrfA~R~k 473 (716)
+++||++||+||+|+|
T Consensus 313 ~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 313 NYDETLSTLRFASRAK 328 (328)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 9999999999999986
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.4e-66 Score=562.35 Aligned_cols=324 Identities=42% Similarity=0.640 Sum_probs=291.6
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEeCCC-CEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHH
Q 042351 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHS-NYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPL 228 (716)
Q Consensus 150 ~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~-~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 228 (716)
+|+|+||+||++..|...+...++.+.+.. ..+.+..+. ...+...|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~ 74 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK------NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDS 74 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC------CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHH
Confidence 689999999999999988888899886442 366665543 2235678999999999999999999999999999
Q ss_pred HhcCCCccEEEeCCCCCCCccccC------CCCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCC-CCccee
Q 042351 229 IFHRTKATCFAYGQTGSGKTYTMQ------PLPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLND-RKKLCM 301 (716)
Q Consensus 229 vl~G~N~tifAYGqTGSGKTyTm~------Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~-~~~l~i 301 (716)
+++|+|+|||+||+|||||||||+ |+.++++.+||..+........|.|+|||+|||+|+++|||++ ++.+.+
T Consensus 75 ~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i 154 (335)
T smart00129 75 VLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEI 154 (335)
T ss_pred HhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEE
Confidence 999999999999999999999998 6788999999999977666678999999999999999999985 557899
Q ss_pred EecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEEeC
Q 042351 302 REDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDL 381 (716)
Q Consensus 302 red~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDL 381 (716)
++++.+++++.|++++.|.+++|+.++|..|.++|.+++|.+|..|||||+||+|+|.+.... ........|+|+||||
T Consensus 155 ~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~-~~~~~~~~s~l~~VDL 233 (335)
T smart00129 155 REDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN-SSSGSGKASKLNLVDL 233 (335)
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC-CCCCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999876332 2334567899999999
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhC--CCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCH
Q 042351 382 AGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN--DQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSC 459 (716)
Q Consensus 382 AGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~--~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~ 459 (716)
||+|+..+.+. .+.+..|+..||+||.+|++||.+|.+ +..|||||+|+||+||+++|+|+++|+||+||||...++
T Consensus 234 aGse~~~~~~~-~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~ 312 (335)
T smart00129 234 AGSERASKTGA-EGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNL 312 (335)
T ss_pred CCCCccccccC-hhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccch
Confidence 99999777653 445666999999999999999999998 577999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCcc
Q 042351 460 EHTINTLRYADRVKSLSKGNIS 481 (716)
Q Consensus 460 eeTlsTLrfA~R~k~I~~~~~~ 481 (716)
+||++||+||.++++|+++|..
T Consensus 313 ~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 313 EETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCCc
Confidence 9999999999999999998864
No 24
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3e-68 Score=613.13 Aligned_cols=332 Identities=34% Similarity=0.509 Sum_probs=293.6
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
..-.|+|||+||+||+...|.......++... ....+.+..+...- ..+.+.|.||+||+|.++|++||.+ +.|
T Consensus 310 ~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~ 383 (670)
T KOG0239|consen 310 LELKGNIRVFCRVRPLLPSEKQRLQSKVIDTE-EQGEVQVDSPDKGD----KLEPQSFKFDKVFGPLASQDDVFEE-VSP 383 (670)
T ss_pred HHhhcCceEEEEecCCCccccccccccccccC-CcceeEeecCCCCC----CCccccceeeeecCCcccHHHHHHH-HHH
Confidence 36679999999999999988876555555443 22445555544221 1123469999999999999999998 999
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccCC-------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC-
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQP-------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR- 296 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~G-------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~- 296 (716)
+|+++|+|||+||||||||||||||||.| +.++++..||..+......|.|.+.+||+|||||.|+|||++.
T Consensus 384 lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~ 463 (670)
T KOG0239|consen 384 LVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES 463 (670)
T ss_pred HHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc
Confidence 99999999999999999999999999987 5689999999999997778999999999999999999999876
Q ss_pred --CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEE
Q 042351 297 --KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVG 374 (716)
Q Consensus 297 --~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~s 374 (716)
.++.|+.+++++.+|.+++.+.|.+.+++..+++.|.++|++++|.+|.+|||||+||+|+|... +........|
T Consensus 464 ~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~---~~~t~~~~~g 540 (670)
T KOG0239|consen 464 YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI---NELTGIRVTG 540 (670)
T ss_pred cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc---ccCccccccc
Confidence 47889999999999999999999999999999999999999999999999999999999999865 3334456789
Q ss_pred EEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCC
Q 042351 375 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISP 454 (716)
Q Consensus 375 kL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP 454 (716)
.|+|||||||||..+++..+ .+.+|+..||+||++||+||.||..+..|||||+||||+||+|||||++||+|+++|||
T Consensus 541 ~l~LVDLAGSER~~~s~~tG-~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP 619 (670)
T KOG0239|consen 541 VLNLVDLAGSERVSKSGVTG-ERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISP 619 (670)
T ss_pred ceeEeecccCcccCcCCCch-hhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCc
Confidence 99999999999988876655 45569999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCCcccCCCC
Q 042351 455 SSGSCEHTINTLRYADRVKSLSKGNISKRDPL 486 (716)
Q Consensus 455 ~~~~~eeTlsTLrfA~R~k~I~~~~~~~~dp~ 486 (716)
...++.||+++|+||.|++.+..++..+....
T Consensus 620 ~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~ 651 (670)
T KOG0239|consen 620 AAAALFETLCSLRFATRVRSVELGSARKQVST 651 (670)
T ss_pred cHHHHhhhhhccchHHHhhceecccccccccc
Confidence 99999999999999999999998887665443
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.9e-67 Score=568.75 Aligned_cols=316 Identities=41% Similarity=0.641 Sum_probs=277.4
Q ss_pred EeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCc
Q 042351 156 RKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKA 235 (716)
Q Consensus 156 RvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~ 235 (716)
|+||++..|...+...++.+.... ..................|.||+||+++++|++||+.++.|+|+.+|+|+|+
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~ 76 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQD----SNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNA 76 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTE----TEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCc----cccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCce
Confidence 999999999999988887774211 1111112233344567899999999999999999999999999999999999
Q ss_pred cEEEeCCCCCCCccccCC--------CCccchHHHHHHHhhhccc--cceeeEEEEEEEecCeeeecCCCC-----Ccce
Q 042351 236 TCFAYGQTGSGKTYTMQP--------LPLKASHDILRLMHQMHRS--QGFQLYVSFFEIYGGKVFDLLNDR-----KKLC 300 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~G--------l~~~a~~~if~~i~~~~~~--~~~~V~vS~~EIYne~v~DLL~~~-----~~l~ 300 (716)
||||||+|||||||||+| +.++++.+||..+...... ..|.|+|||+|||+|+|+|||++. +.+.
T Consensus 77 ~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~ 156 (335)
T PF00225_consen 77 TIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLK 156 (335)
T ss_dssp EEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBE
T ss_pred EEEeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccc
Confidence 999999999999999998 4678899999999875543 689999999999999999999876 4699
Q ss_pred eEecCCCc-EEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCC-CceeEEEEEE
Q 042351 301 MREDGKQQ-VCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSK-PARLVGKLSF 378 (716)
Q Consensus 301 ired~~~~-v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~-~~~~~skL~f 378 (716)
+++++..+ ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|.|.+........ .....|+|+|
T Consensus 157 i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~ 236 (335)
T PF00225_consen 157 IREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTF 236 (335)
T ss_dssp EEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEE
T ss_pred eeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceee
Confidence 99999876 999999999999999999999999999999999999999999999999999876544322 1247899999
Q ss_pred EeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCC--CCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCC
Q 042351 379 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND--QGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSS 456 (716)
Q Consensus 379 VDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~--~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~ 456 (716)
|||||+|+..+....++++..|+..||+||.+|++||.+|..+ ..|||||+||||+||||+|+|||+|+||+||||..
T Consensus 237 vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~ 316 (335)
T PF00225_consen 237 VDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSS 316 (335)
T ss_dssp EEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBG
T ss_pred eecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcc
Confidence 9999999988877666777889999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 042351 457 GSCEHTINTLRYADRVKSL 475 (716)
Q Consensus 457 ~~~eeTlsTLrfA~R~k~I 475 (716)
.+++||++||+||+++|+|
T Consensus 317 ~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 317 EDYEETLSTLRFASRAREI 335 (335)
T ss_dssp GGHHHHHHHHHHHHHHTTE
T ss_pred ccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999986
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-62 Score=548.02 Aligned_cols=327 Identities=30% Similarity=0.515 Sum_probs=274.7
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccc---cccccceEEEeceecCCCCCcHHhhhhcch
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDL---TEYVERHEFVFDAVLNEDVTNEEVYSETVE 223 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~---t~~~~~~~F~FD~VFd~~asQeeVy~~~v~ 223 (716)
....|.||||+||+.. ..++..++.+. +..++.++.|...... ....-.+.|.|-+||+++++|.+||+.++.
T Consensus 29 ~~d~v~v~~rvrP~~~---~~~~~g~l~v~-n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~ 104 (809)
T KOG0247|consen 29 SKDPVLVVCRVRPLSD---ASEDEGCLRVI-NEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVA 104 (809)
T ss_pred hhcchheeEeecCCCC---CccccceEEEe-ccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhH
Confidence 4568999999999875 23455666665 5556666655422111 112235689999999999999999999999
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhh-c--------------------------
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQM-H-------------------------- 270 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~-~-------------------------- 270 (716)
|+|.+++.|.|..+|+||.|||||||||+| +.|+++..||..|... +
T Consensus 105 plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 105 PLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999976 6677777777554320 0
Q ss_pred -------------------------------------cccceeeEEEEEEEecCeeeecCCCC-------CcceeEecCC
Q 042351 271 -------------------------------------RSQGFQLYVSFFEIYGGKVFDLLNDR-------KKLCMREDGK 306 (716)
Q Consensus 271 -------------------------------------~~~~~~V~vS~~EIYne~v~DLL~~~-------~~l~ired~~ 306 (716)
.+..|.|||||+||||+.|||||.+. +...+++|.+
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~ 264 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTN 264 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccC
Confidence 01127899999999999999999753 2266889999
Q ss_pred CcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEEeCCCCCC
Q 042351 307 QQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDLAGSER 386 (716)
Q Consensus 307 ~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLAGSEr 386 (716)
+.++|+||++|+|.+.+|++++|..|.+.|+.++|..|..|||||+||+|.|.+..... ......+|.|+|||||||||
T Consensus 265 ~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 265 GNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc-ccCceeEEeeeeeecccchh
Confidence 99999999999999999999999999999999999999999999999999998865442 23456789999999999999
Q ss_pred CCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCC-----CCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCHHH
Q 042351 387 GADTTDNDKQTRMEGAEINKSLLALKECIRALDND-----QGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEH 461 (716)
Q Consensus 387 ~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~-----~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~ee 461 (716)
..++...+ .+..|+++||.||++||.||.+|+.+ +.+|||||||||++++.+|.|..+.+||+||+|...+|+|
T Consensus 344 t~rtq~sG-~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 344 TNRTQNSG-ERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred cccccchh-HHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 77766554 55569999999999999999999764 3689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCC
Q 042351 462 TINTLRYADRVKSLSKGN 479 (716)
Q Consensus 462 TlsTLrfA~R~k~I~~~~ 479 (716)
+++.|+||.-+..|...+
T Consensus 423 nl~vlkFaeiaq~v~v~~ 440 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVAR 440 (809)
T ss_pred HHHHHHHHHhcccccccC
Confidence 999999999999986543
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-61 Score=548.94 Aligned_cols=313 Identities=36% Similarity=0.567 Sum_probs=283.7
Q ss_pred eCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCcc
Q 042351 157 KRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKAT 236 (716)
Q Consensus 157 vRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~t 236 (716)
+||+...|...++..|+.+.|...++++.. ...|+||+||+....|.++|+.+|.|+++.+|.|||+|
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~------------~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynat 68 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK------------DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNAT 68 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC------------CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcce
Confidence 699999999999999999888888887764 34799999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCccccC----------CCCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCCC---cceeEe
Q 042351 237 CFAYGQTGSGKTYTMQ----------PLPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRK---KLCMRE 303 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~----------Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~~---~l~ire 303 (716)
++|||||||||||||. |++|++...+|..+..... ..|.|.|||+|||++.|+|||.+.. .+.+++
T Consensus 69 vlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e 147 (913)
T KOG0244|consen 69 VLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE 147 (913)
T ss_pred eeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc
Confidence 9999999999999993 7899999999999987544 7799999999999999999998532 366777
Q ss_pred cCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEEeCCC
Q 042351 304 DGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDLAG 383 (716)
Q Consensus 304 d~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLAG 383 (716)
+++++.+.|++++.|.+..++...+..|...|++++|+||..|||||+||+|.+++...... ....++||+||||||
T Consensus 148 -~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~--~s~~~sKlhlVDLAG 224 (913)
T KOG0244|consen 148 -PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK--RSSFCSKLHLVDLAG 224 (913)
T ss_pred -cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc--cchhhhhhheeeccc
Confidence 88899999999999999999999999999999999999999999999999999987533222 234679999999999
Q ss_pred CCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCC--CCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCHHH
Q 042351 384 SERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG--HIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEH 461 (716)
Q Consensus 384 SEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~--hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~ee 461 (716)
|||..+|.+.+ .+.+||.+||.+|++||+||.||...+. |||||+||||+||+|+||||+.|+||+||||+..+.+|
T Consensus 225 SER~kkT~a~g-drlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~E 303 (913)
T KOG0244|consen 225 SERVKKTKAEG-DRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQE 303 (913)
T ss_pred cccccccccch-hhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhh
Confidence 99988887655 5667999999999999999999987665 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCcccCCCC
Q 042351 462 TINTLRYADRVKSLSKGNISKRDPL 486 (716)
Q Consensus 462 TlsTLrfA~R~k~I~~~~~~~~dp~ 486 (716)
|++||+||+|+++|++.|+++.||.
T Consensus 304 tlnTl~ya~Rak~iknk~vvN~d~~ 328 (913)
T KOG0244|consen 304 TLNTLRYADRAKQIKNKPVVNQDPK 328 (913)
T ss_pred HHHHHHHhhHHHHhcccccccccHH
Confidence 9999999999999999998887764
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-56 Score=513.21 Aligned_cols=318 Identities=39% Similarity=0.608 Sum_probs=276.5
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
.-....++++++..|-...+ .++... +...+.++.. ....|.||+||++.++|++||+.+++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~----------~~~~~~fdkvf~~~~~q~~v~e~~~~~ 80 (568)
T COG5059 18 EKSVSDIKSTIRIIPGELGE------RLINTS-KKSHVSLEKS----------KEGTYAFDKVFGPSATQEDVYEETIKP 80 (568)
T ss_pred eeeecCceEEEeecCCCcch------heeecc-cccccccccc----------cceEEEEeeccCCCCcHHHHHHHhhhh
Confidence 34567899999999954332 122111 2222222111 146799999999999999999999999
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCCCc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKK 298 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~~~ 298 (716)
+++.++.||||||||||||||||||||.| +.+..+..||..+........+.|.|||+|||+|+++|||.+...
T Consensus 81 l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~ 160 (568)
T COG5059 81 LIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE 160 (568)
T ss_pred HHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc
Confidence 99999999999999999999999999975 668888999999988766778999999999999999999987665
Q ss_pred -ceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEE
Q 042351 299 -LCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLS 377 (716)
Q Consensus 299 -l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~ 377 (716)
+.++++...+|.|.|++++.+.+.+|++.+|++|..+|+++.|.+|..|||||+||++.+.+....... ...++|+
T Consensus 161 ~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~---~~~~~l~ 237 (568)
T COG5059 161 SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGT---SETSKLS 237 (568)
T ss_pred cccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccc---eecceEE
Confidence 789999999999999999999999999999999999999999999999999999999999887544332 2237999
Q ss_pred EEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhC--CCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCC
Q 042351 378 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN--DQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPS 455 (716)
Q Consensus 378 fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~--~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~ 455 (716)
||||||||+...+ .....+..|+..||+||++||+||.+|.. +..|||||+|||||+|+++|||+|+|+|||||+|.
T Consensus 238 lvDLagSE~~~~~-~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~ 316 (568)
T COG5059 238 LVDLAGSERAART-GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPS 316 (568)
T ss_pred EEeeccccccchh-hcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCC
Confidence 9999999998887 45566777999999999999999999987 78899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccccCCcccC
Q 042351 456 SGSCEHTINTLRYADRVKSLSKGNISKR 483 (716)
Q Consensus 456 ~~~~eeTlsTLrfA~R~k~I~~~~~~~~ 483 (716)
..++++|++||+||.|+|+|++.+..+.
T Consensus 317 ~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 317 SNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred CCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999998877663
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1e-45 Score=368.71 Aligned_cols=173 Identities=42% Similarity=0.638 Sum_probs=155.0
Q ss_pred hhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCCCC------ccchHHHHHHHhhhccccceeeEEEEEEEecCeee
Q 042351 217 VYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLP------LKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVF 290 (716)
Q Consensus 217 Vy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~Gl~------~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~ 290 (716)
||+.++ |+|+.+++|+|+||||||||||||||||+|.. ++++.+
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999988 99999999999999999999999999999643 332222
Q ss_pred ecCCCCCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCc
Q 042351 291 DLLNDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPA 370 (716)
Q Consensus 291 DLL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~ 370 (716)
+++++..|.++|..+.|.+|..|||||+||+|++.+..........
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~ 103 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQ 103 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccc
Confidence 8899999999999999999999999999999999887655434445
Q ss_pred eeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEE
Q 042351 371 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMIS 450 (716)
Q Consensus 371 ~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa 450 (716)
...++|+||||||||+..+++.. +.+..|++.||+||.+|++||.+|.+++.|||||+||||+||||+|+|||+|+||+
T Consensus 104 ~~~s~l~lVDLAGsE~~~~~~~~-~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~ 182 (186)
T cd01363 104 PKVGKINLVDLAGSERIDFSGAE-GSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVA 182 (186)
T ss_pred eeeeeEEEEEccccccccccCCc-hhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEE
Confidence 67899999999999998776544 45667999999999999999999999999999999999999999999999999999
Q ss_pred EeCC
Q 042351 451 CISP 454 (716)
Q Consensus 451 ~ISP 454 (716)
||||
T Consensus 183 ~vsP 186 (186)
T cd01363 183 CISP 186 (186)
T ss_pred EeCc
Confidence 9998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.32 E-value=8.2e-07 Score=103.27 Aligned_cols=254 Identities=21% Similarity=0.203 Sum_probs=137.8
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEe----CCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhh
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQ----PHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSE 220 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~----~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~ 220 (716)
.++..+++|+|+|+|.......-. +.+.+- .-.+.+.+... .....+...|.||.+|.....+..++..
T Consensus 301 LgG~~~~~~i~~Isp~~~~~~et~--~tL~~a~rak~I~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 373 (568)
T COG5059 301 LGGNCNTRVICTISPSSNSFEETI--NTLKFASRAKSIKNKIQVNSS-----SDSSREIEEIKFDLSEDRSEIEILVFRE 373 (568)
T ss_pred cCCCccEEEEEEEcCCCCchHHHH--HHHHHHHHHhhcCCcccccCc-----CcchHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 355669999999999874321100 000000 00111111110 0112344679999999999999988876
Q ss_pred cchhhHHHHhcCCCccEEEeCCCCCCCccccCCC----CccchHHHHHHHhh-hccccceeeEEEEEEEecCeeeecCCC
Q 042351 221 TVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPL----PLKASHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFDLLND 295 (716)
Q Consensus 221 ~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~Gl----~~~a~~~if~~i~~-~~~~~~~~V~vS~~EIYne~v~DLL~~ 295 (716)
..-+++.-++| +++|+++++++++||.-- .......++..... ..+.+.+...+-+.++|-..+.+++..
T Consensus 374 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e 448 (568)
T COG5059 374 -QSQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREE 448 (568)
T ss_pred -HHhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777 999999999999999531 11111222222222 122233333444444441111122211
Q ss_pred C--Cc-ceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCcee
Q 042351 296 R--KK-LCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARL 372 (716)
Q Consensus 296 ~--~~-l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~ 372 (716)
. +. -........+.....+.........+.... ..+...+....+..|..++++|.+|........... .. .
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~~-~ 523 (568)
T COG5059 449 ELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVES-EKASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST---KE-L 523 (568)
T ss_pred hcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhh-hhhccchhhcccchhhhhcccchhhhhcccchhhhh---HH-H
Confidence 0 00 000000000000000000011111111111 145677888999999999999999987664331111 11 1
Q ss_pred EEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHh
Q 042351 373 VGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALD 419 (716)
Q Consensus 373 ~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~ 419 (716)
. ++.|||||+||. - ....+.+..+...+|++|..++.+|.++.
T Consensus 524 -~-~n~~~~~~~e~~-~-s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 524 -S-LNQVDLAGSERK-V-SQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred -H-hhhhhccccccc-h-hhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 1 799999999997 4 34455666799999999999999998763
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.013 Score=66.72 Aligned_cols=85 Identities=21% Similarity=0.391 Sum_probs=63.1
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCCC------Cc-------cchHHHHHHHh
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPL------PL-------KASHDILRLMH 267 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~Gl------~~-------~a~~~if~~i~ 267 (716)
.|..-.-|.|.-+|- ..++.||+.+-.|.. .-.-.|.|||||||||-.+ |. ..+..|+..+.
T Consensus 4 ~F~l~s~f~PaGDQP----~AI~~Lv~gi~~g~~-~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQP----EAIAELVEGIENGLK-HQTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcH----HHHHHHHHHHhcCce-eeEEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 477777788888886 446667777655543 3455799999999999431 11 23457888888
Q ss_pred hhccccceeeEEEEEEEecCeee
Q 042351 268 QMHRSQGFQLYVSFFEIYGGKVF 290 (716)
Q Consensus 268 ~~~~~~~~~V~vS~~EIYne~v~ 290 (716)
..+.+.....+||||.-|.-..|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 88888889999999999987754
No 32
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.02 E-value=0.11 Score=59.57 Aligned_cols=37 Identities=41% Similarity=0.584 Sum_probs=32.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042351 629 DLNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEAD 666 (716)
Q Consensus 629 ~I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vd 666 (716)
--+.+||+||++|++||++|+.+|+++.+||++| +++
T Consensus 640 k~~s~l~q~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~ 676 (676)
T KOG0246|consen 640 KAESDLEQEEDLLAALRKEVKDTLNTVLAEEKVL-EID 676 (676)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCC
Confidence 3456799999999999999999999999999999 543
No 33
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.58 E-value=0.096 Score=54.01 Aligned_cols=49 Identities=31% Similarity=0.457 Sum_probs=30.1
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|+||.-+.. ..|+..|.. +..+.+.--..+| .+|-||++|+||||-|.
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 5899986643 457777754 4444433111123 48899999999999874
No 34
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.62 E-value=0.18 Score=54.32 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=28.1
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+.|++..+++--++.|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 5678888899999999999999999999984
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=87.51 E-value=0.35 Score=50.10 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=32.0
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G 253 (716)
..++||..+... ++..+ .-+...+-.+++..++-||++|+||||.+..
T Consensus 11 ~~~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 458999988654 33222 2222233346777789999999999999853
No 36
>PRK06620 hypothetical protein; Validated
Probab=87.31 E-value=0.27 Score=50.65 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=33.4
Q ss_pred ceEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCC---ccEEEeCCCCCCCccccC
Q 042351 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTK---ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 199 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N---~tifAYGqTGSGKTyTm~ 252 (716)
...|+||..+-.. +|+..|.. ++.+.+. -|+| -.++-||++|+||||.+.
T Consensus 10 ~~~~tfd~Fvvg~-~N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSS-SNDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEecc-cHHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 3468999876643 45667766 3333321 1344 359999999999999986
No 37
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.36 E-value=0.3 Score=57.71 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=34.4
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G 253 (716)
..|+||..+-. .++..+|.. +..++...-.++|. ||-||.+|+||||.+..
T Consensus 283 ~~~TFDnFvvG-~sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIG-ASNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCC-CccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 46899986643 346556643 44444433335665 89999999999999853
No 38
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.27 E-value=0.62 Score=48.49 Aligned_cols=48 Identities=8% Similarity=0.319 Sum_probs=31.7
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G 253 (716)
..|+||.-+.. .|...+.. +..+.. ......++-||++|+||||.+..
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 35788876543 56666654 333321 22334789999999999999853
No 39
>PRK12377 putative replication protein; Provisional
Probab=83.90 E-value=0.6 Score=49.29 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=34.4
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+||........|..++.. +..+++.+..+. ..++-||++|+||||.+.
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 3677654444556666654 666777666543 568999999999999985
No 40
>PRK08116 hypothetical protein; Validated
Probab=83.31 E-value=0.57 Score=49.92 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=34.7
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhc--CCCccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFH--RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~--G~N~tifAYGqTGSGKTyTm~ 252 (716)
.++||.-. .+..+...|.. +...++.+.. ..+..++-||.+|+||||.+.
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 46787644 34555556654 6666666544 345569999999999999885
No 41
>PRK09087 hypothetical protein; Validated
Probab=83.18 E-value=0.53 Score=48.82 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=31.6
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..|+||..+... .|..+|.. +.....-.+-.++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~-~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTE-SNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecC-chHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 457899877543 34557764 222222235558999999999999986
No 42
>PRK05642 DNA replication initiation factor; Validated
Probab=82.40 E-value=0.78 Score=47.72 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=29.0
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhc---CC-CccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFH---RT-KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~---G~-N~tifAYGqTGSGKTyTm~ 252 (716)
..|+||.-+.. .+..++.. +....+ +. .-.++-||++|+||||-+.
T Consensus 14 ~~~tfdnF~~~--~~~~a~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPG--ANAAALGY-----VERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcC--ChHHHHHH-----HHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 35899987743 23333332 332222 22 2468899999999999885
No 43
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.07 E-value=2 Score=48.02 Aligned_cols=50 Identities=20% Similarity=0.419 Sum_probs=31.5
Q ss_pred HHHHhcCCCc-cEEEeCCCCCCCccccCCCCccchHHHHHHHhhhccccceeeEEEEEEE
Q 042351 226 VPLIFHRTKA-TCFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQGFQLYVSFFEI 284 (716)
Q Consensus 226 V~~vl~G~N~-tifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EI 284 (716)
+..++.|.-. .++.||.||+|||.|+ +.+++.+........ .++|-+.++
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~--------~~v~~~l~~~~~~~~-~~yINc~~~ 83 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV--------KFVMEELEESSANVE-VVYINCLEL 83 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH--------HHHHHHHHhhhccCc-eEEEeeeeC
Confidence 4445555433 4999999999999988 366666665433222 455555443
No 44
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.18 E-value=0.92 Score=49.68 Aligned_cols=48 Identities=29% Similarity=0.408 Sum_probs=28.3
Q ss_pred eceecCCCCCcHHhhhhcchhhHHHHhc-CCCccEEEeCCCCCCCccccC
Q 042351 204 FDAVLNEDVTNEEVYSETVEPIVPLIFH-RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 204 FD~VFd~~asQeeVy~~~v~pLV~~vl~-G~N~tifAYGqTGSGKTyTm~ 252 (716)
-|++.+.-...++-++.+.. .+..++. +....++-||++|+|||+++.
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 33333333344444444222 3334444 455689999999999999873
No 45
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=81.08 E-value=0.71 Score=52.68 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=33.3
Q ss_pred ceEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 199 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
...|+||.-+- ..++...|.. +..+... -..+|. +|-||++|+||||.|.
T Consensus 99 ~~~~tFdnFv~-g~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVV-GPGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCccccccc-CCchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 34689998764 3456666665 3333332 112564 9999999999999985
No 46
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.86 E-value=0.8 Score=52.64 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=25.7
Q ss_pred hhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 223 EPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 223 ~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
...+..+++.-++-|+.-|+||||||.||+
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 344567788899999999999999999996
No 47
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=80.79 E-value=1.1 Score=53.64 Aligned_cols=84 Identities=18% Similarity=0.354 Sum_probs=56.3
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCCCCc-------------cchHHHHHHHhh
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPL-------------KASHDILRLMHQ 268 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~Gl~~-------------~a~~~if~~i~~ 268 (716)
|....-|.|.-.|..-++. |++.+-+|.... ..+|.||||||+||-.+.. ..+..++..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4455567777788776665 455555554332 3789999999999954211 123456666666
Q ss_pred hccccceeeEEEEEEEecCeee
Q 042351 269 MHRSQGFQLYVSFFEIYGGKVF 290 (716)
Q Consensus 269 ~~~~~~~~V~vS~~EIYne~v~ 290 (716)
.........+||||..|.-..|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 6555558889999999987754
No 48
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=80.73 E-value=0.76 Score=51.58 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=31.3
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..|+||...- ...+...|.. +..+...--..+| .++-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 4689998442 3456656654 4444332111133 47889999999999985
No 49
>PRK06526 transposase; Provisional
Probab=80.63 E-value=0.59 Score=49.45 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=16.4
Q ss_pred cEEEeCCCCCCCccccCCC
Q 042351 236 TCFAYGQTGSGKTYTMQPL 254 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~Gl 254 (716)
.++.||++|+||||.+.++
T Consensus 100 nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred eEEEEeCCCCchHHHHHHH
Confidence 3799999999999998653
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.58 E-value=1 Score=45.71 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=31.8
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..++||.... + .+..+++. ++.++ .......++-||++|+||||.+.
T Consensus 10 ~~~~~~~~~~-~-~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYA-G-GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCc-C-CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 4578887763 2 45555554 33322 24566789999999999999884
No 51
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=79.58 E-value=0.9 Score=51.85 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=31.9
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..|+||...- ...+...|.. +..+.+.--..+| .++-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCccccccc-CCCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 4688988443 3456666654 4444332111233 58889999999999985
No 52
>PRK07952 DNA replication protein DnaC; Validated
Probab=79.43 E-value=0.97 Score=47.62 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=31.6
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..+||...-....|..++.. +...++.+..+. ..++-||.+|+||||.+.
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence 35676644333445556654 444555443332 378999999999999885
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=79.33 E-value=1.1 Score=40.72 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=19.4
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+...+.......++.+|++|+|||+.+.
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 3333333345568899999999998773
No 54
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=79.25 E-value=0.95 Score=51.84 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=31.6
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|+||..+.. .+++..|.. +..++..-=..+| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 4899986643 356666644 4444332101133 58999999999999985
No 55
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=79.11 E-value=1.3 Score=45.40 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=31.4
Q ss_pred ceEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 199 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
...|+||..+. ..++.+... ++.++.. ......++-||++|+||||.+.
T Consensus 12 ~~~~~~d~f~~--~~~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVA--GENAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhccccc--CCcHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 34589999873 223444432 4444331 2345579999999999999874
No 56
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=78.29 E-value=0.9 Score=43.76 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=21.1
Q ss_pred hhhHHHHhcC-CCccEEEeCCCCCCCccccCC
Q 042351 223 EPIVPLIFHR-TKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 223 ~pLV~~vl~G-~N~tifAYGqTGSGKTyTm~G 253 (716)
..+++.+-.+ ....++..++||||||++|..
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3344444333 356677778999999999974
No 57
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=77.87 E-value=17 Score=38.28 Aligned_cols=53 Identities=30% Similarity=0.432 Sum_probs=33.3
Q ss_pred EecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEEeCCCCCC
Q 042351 318 RVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDLAGSER 386 (716)
Q Consensus 318 ~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVDLAGSEr 386 (716)
.+.+.+++...|...... ..+. + ..-|.-++.|.|... ..-.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p----------~~~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSP----------HVLNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCC----------CCCceEEEeCCCccc
Confidence 446788888888776542 1111 1 223455777777542 124789999999965
No 58
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=77.36 E-value=2.1 Score=45.17 Aligned_cols=124 Identities=18% Similarity=0.276 Sum_probs=69.9
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHhcCCCc-cEEEeCCCCCCCccccCCCCccchHHHHHHHhhhccccceeeEEE
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKA-TCFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQGFQLYVS 280 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~-tifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~~~~~~~~V~vS 280 (716)
..+|...+-+...+.+.+. ...+++|..+ -++-||..|+|||.++.. ++..... .. +-
T Consensus 24 ~~l~~L~Gie~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlVka--------ll~~y~~----~G----LR 82 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLVKA--------LLNEYAD----QG----LR 82 (249)
T ss_pred CCHHHhcCHHHHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHHHH--------HHHHHhh----cC----ce
Confidence 3555555555445555554 3577788765 377799999999988742 2222221 12 55
Q ss_pred EEEEecCeeeecC------CCCCcceeEecCCCcEEEeCcEEEEe-cCHHHHHHHHHHHhhcccccccCCCCCCCCCeEE
Q 042351 281 FFEIYGGKVFDLL------NDRKKLCMREDGKQQVCIVGLQEYRV-SNVDTIRELIEKGNATRSTGTTGANEESSRSHAI 353 (716)
Q Consensus 281 ~~EIYne~v~DLL------~~~~~l~ired~~~~v~v~gLte~~V-~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~I 353 (716)
.+||..+.+.||- ..+..-.| +++.+|+--.- .+...+..+|+-|...| ....-...+|.|-|.|
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFI-------lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFI-------LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLV 154 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEE-------EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhcc
Confidence 6888888766553 22221111 34444442211 23566777777666555 3444455667777766
Q ss_pred E
Q 042351 354 L 354 (716)
Q Consensus 354 f 354 (716)
=
T Consensus 155 ~ 155 (249)
T PF05673_consen 155 P 155 (249)
T ss_pred c
Confidence 4
No 59
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=76.93 E-value=1.5 Score=48.64 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=19.7
Q ss_pred HHHHhc-CCCccEEEeCCCCCCCccccC
Q 042351 226 VPLIFH-RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 226 V~~vl~-G~N~tifAYGqTGSGKTyTm~ 252 (716)
+...+. +....++-||++|+|||+++.
T Consensus 46 l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 46 LRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred HHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 333443 345678999999999999873
No 60
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=76.59 E-value=1.2 Score=50.19 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=31.1
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..|+||.... ..++.-.|.. +.. |...-.+..--+|-||.+|+||||-|.
T Consensus 82 ~~ytFdnFv~-g~~N~~A~aa-~~~-va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 82 PKYTFDNFVV-GPSNRLAYAA-AKA-VAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCchhheee-CCchHHHHHH-HHH-HHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 4589998554 3455555543 211 222222234468999999999999995
No 61
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=76.06 E-value=1.1 Score=40.12 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=14.4
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
++.+|+||+|||+++.
T Consensus 3 ~~i~~~~G~GKT~~~~ 18 (144)
T cd00046 3 VLLAAPTGSGKTLAAL 18 (144)
T ss_pred EEEECCCCCchhHHHH
Confidence 6789999999999985
No 62
>PRK08727 hypothetical protein; Validated
Probab=75.43 E-value=1.3 Score=46.03 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=16.1
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
-.++-||++|+||||.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999999885
No 63
>PF13245 AAA_19: Part of AAA domain
Probab=75.01 E-value=1.5 Score=37.70 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=18.2
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
|...+. .+..++.-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344455 34445559999999999984
No 64
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=73.83 E-value=1.3 Score=45.39 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=26.6
Q ss_pred hHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCC
Q 042351 405 NKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSS 456 (716)
Q Consensus 405 NkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~ 456 (716)
.....++...+..|.......+--...+...|-+++..+.++++| .+|--.
T Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~i~Ii-DLs~~~ 214 (229)
T PF01935_consen 164 SSTIRALLRRLERLFRRGSFFSSTPEDIIKLLLDYLNKPGKIVII-DLSGVD 214 (229)
T ss_pred HHHHHHHHHHHHHHHhcccccccCcccHHHHhhhhcCCCCCEEEE-ECCCCC
Confidence 334455555555555444433333455666666777655555444 555433
No 65
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.50 E-value=1.6 Score=51.44 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=23.5
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3456667788999999999999999985
No 66
>PRK10436 hypothetical protein; Provisional
Probab=73.05 E-value=1.8 Score=49.87 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=22.7
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+..++..-++.|+..|+||||||.||.
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 445566778899999999999999995
No 67
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=72.14 E-value=1.9 Score=47.59 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=21.1
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+..++.--.+.|+-.|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3444444445779999999999999995
No 68
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=71.87 E-value=1.9 Score=49.92 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=22.9
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+..++..-.+.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3445666777889999999999999995
No 69
>PRK06835 DNA replication protein DnaC; Validated
Probab=71.43 E-value=2.3 Score=46.73 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=25.6
Q ss_pred HhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC
Q 042351 216 EVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 216 eVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G 253 (716)
.++.. +...|+.+-.+. -.++-||++|+||||.+..
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 34433 555676665544 6699999999999998753
No 70
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=70.76 E-value=1.6 Score=46.06 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=16.7
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 6778888999999999984
No 71
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=70.39 E-value=1.7 Score=43.91 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=16.0
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
+.|+-.|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999984
No 72
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=70.17 E-value=1.8 Score=38.70 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.6
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 457889999999999985
No 73
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=69.95 E-value=2.3 Score=47.57 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.2
Q ss_pred CCccEEEeCCCCCCCccccC
Q 042351 233 TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~ 252 (716)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999994
No 74
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=69.93 E-value=3.5 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=18.7
Q ss_pred HHHhcCCCccEEEeCCCCCCCcccc
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
-.+..+. +.|+-.|.||||||+++
T Consensus 167 ~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 167 RRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3334444 78899999999999987
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=69.62 E-value=1.4 Score=40.39 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=13.7
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
..+++.+|.+|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4578999999999999883
No 76
>PF12846 AAA_10: AAA-like domain
Probab=69.60 E-value=1.8 Score=45.27 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=16.3
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999984
No 77
>PRK08939 primosomal protein DnaI; Reviewed
Probab=69.03 E-value=2.3 Score=46.26 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=31.0
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcC-CCccEEEeCCCCCCCccccCC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHR-TKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G-~N~tifAYGqTGSGKTyTm~G 253 (716)
+||.+-........++.. +...++....| ..-.++-||++|+||||.+.+
T Consensus 125 tf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 125 SLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred cHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 454433222345556654 45555554443 234699999999999999854
No 78
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=68.92 E-value=2.3 Score=40.63 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
++.+.+|.+ ++..|+||+|||....
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHH
Confidence 444556666 7899999999999874
No 79
>PRK08181 transposase; Validated
Probab=68.76 E-value=3.3 Score=44.29 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=15.4
Q ss_pred EEEeCCCCCCCccccCC
Q 042351 237 CFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~G 253 (716)
++-||++|+||||.+.+
T Consensus 109 lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred EEEEecCCCcHHHHHHH
Confidence 89999999999998854
No 80
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=68.73 E-value=2.5 Score=47.02 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.3
Q ss_pred CCCccEEEeCCCCCCCccccC
Q 042351 232 RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm~ 252 (716)
--.+.|+..|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356889999999999999984
No 81
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=68.71 E-value=3.4 Score=44.24 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=25.6
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+.++++.+.--.-+.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4566667766778899999999999999984
No 82
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=68.50 E-value=2.3 Score=42.99 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=21.1
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|..++...+..++..|..|+||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3455666666667778999999999984
No 83
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=68.17 E-value=2.9 Score=44.52 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=21.2
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+..++..-.+.|+-.|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 345555556778999999999999984
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=67.95 E-value=2.8 Score=47.96 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=32.9
Q ss_pred ceEEEeceecCCCCCcHHhhhhcchhhHHHH--hcC--CCccEEEeCCCCCCCccccC
Q 042351 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLI--FHR--TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 199 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v--l~G--~N~tifAYGqTGSGKTyTm~ 252 (716)
...|+||.-.-. .+++..|.. +..+.... ..| +| .++-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 346899986643 466656644 44444322 123 33 47889999999999985
No 85
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=67.22 E-value=6.5 Score=43.56 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=21.5
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
..|..+++|.+| +-+..||||||..+
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AF 61 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAF 61 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhh
Confidence 457788999987 56779999999987
No 86
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=67.14 E-value=7.1 Score=48.28 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=17.3
Q ss_pred CCCccEEEeCCCCCCCccccC
Q 042351 232 RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm~ 252 (716)
|-+.++|.||++|+|||.|+.
T Consensus 779 gpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 344567899999999999984
No 87
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.87 E-value=3.6 Score=43.59 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=28.2
Q ss_pred CCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC
Q 042351 210 EDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 210 ~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G 253 (716)
....+..+|.. +..++..+- ....++-||++|+||||-..+
T Consensus 84 ~~~~~~~~l~~-~~~~~~~~~--~~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 84 QPGIDKKALED-LASLVEFFE--RGENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcchhHHHHHH-HHHHHHHhc--cCCcEEEECCCCCcHHHHHHH
Confidence 34456677765 555665554 344568899999999998753
No 88
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=66.49 E-value=3.6 Score=42.86 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=18.9
Q ss_pred HHhcCCCccEEEeCCCCCCCccccC
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..+......++-+|+.|+|||+.+.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344445678889999999998874
No 89
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=65.80 E-value=9.9 Score=40.48 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=62.1
Q ss_pred eEEEEEeCCCCchhhhcCCCCeEEEeCCCCE-EEEccccccc--cccccccceEEEeceecCCCCCcHHhhhhcchhhHH
Q 042351 151 IKVVVRKRPLNKKEIAKKEEDIITIQPHSNY-LTVHETKLKV--DLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVP 227 (716)
Q Consensus 151 IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~-v~v~~~k~~v--d~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~ 227 (716)
-.-+||+--...+|.-+....+ ....+++. +-|..|...- .+-...++....+..|=+-+..-++|-+.+--||..
T Consensus 99 sny~vrilstidrellkps~sv-alhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~ 177 (408)
T KOG0727|consen 99 SNYYVRILSTIDRELLKPSASV-ALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTH 177 (408)
T ss_pred CceEEeehhhhhHHHcCCccch-hhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchH
Confidence 3567888877777765433222 11112222 2232222111 111122222334444545555556666665556665
Q ss_pred HHhc---CCC--ccEEEeCCCCCCCcccc-----------------------CCCCccchHHHHHHHhh
Q 042351 228 LIFH---RTK--ATCFAYGQTGSGKTYTM-----------------------QPLPLKASHDILRLMHQ 268 (716)
Q Consensus 228 ~vl~---G~N--~tifAYGqTGSGKTyTm-----------------------~Gl~~~a~~~if~~i~~ 268 (716)
.=+- |.. -.|+.||+.|+|||-.. .|-.|+-.+++|++..+
T Consensus 178 ~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlake 246 (408)
T KOG0727|consen 178 ADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 246 (408)
T ss_pred HHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhc
Confidence 4332 333 35899999999998643 24567777888887765
No 90
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=64.83 E-value=2.3 Score=42.53 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=21.6
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
++.|...+-.|.+.+++-||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344444444566889999999999999987
No 91
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=64.34 E-value=3.7 Score=44.75 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=21.5
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
|+-|-..+..+.---.+-||+.|+|||.|..
T Consensus 45 V~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 45 VQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred HHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 4444444444444457889999999999983
No 92
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=64.30 E-value=3 Score=41.62 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=16.2
Q ss_pred CCccEEEeCCCCCCCccccCC
Q 042351 233 TKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~G 253 (716)
..-.++-+|++|+||||...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHH
Confidence 344699999999999998743
No 93
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=63.52 E-value=5.3 Score=44.23 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=29.3
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHH-HHhc--CC--CccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH--RT--KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G~--N~tifAYGqTGSGKTyTm~ 252 (716)
..+.||.+.+-+.--+++.+.+..|+.. ..+. |. ...++-||++|+|||+++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 3455666655443334444333333322 1222 21 3358999999999998874
No 94
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.32 E-value=9.3 Score=42.55 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=41.1
Q ss_pred EeceecCCCCCcHHhhhhcchhhHH-HHhc--CCCc--cEEEeCCCCCCCcccc-----------------------CCC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVP-LIFH--RTKA--TCFAYGQTGSGKTYTM-----------------------QPL 254 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G~N~--tifAYGqTGSGKTyTm-----------------------~Gl 254 (716)
+|+.|=+-+..-++|.+.+--||.+ ..|+ |..- .|+-||+.|+|||-.- .|-
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 4444433333446666666666654 4444 5443 5999999999999653 244
Q ss_pred CccchHHHHHHHhh
Q 042351 255 PLKASHDILRLMHQ 268 (716)
Q Consensus 255 ~~~a~~~if~~i~~ 268 (716)
.++.++++|.+..+
T Consensus 229 GaRlVRelF~lAre 242 (406)
T COG1222 229 GARLVRELFELARE 242 (406)
T ss_pred chHHHHHHHHHHhh
Confidence 56667777777665
No 95
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=62.01 E-value=2.9 Score=40.56 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=15.4
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+++....|...+++-+|..|+|||+.+
T Consensus 14 ~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 14 DLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3344333456678999999999999986
No 96
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=61.55 E-value=3.8 Score=44.46 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=20.4
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.++..++.+ ...|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 344445553 4568899999999999984
No 97
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=60.80 E-value=3.7 Score=45.01 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=19.7
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.++..++.+ ...|+-.|.||||||++|.
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 344555554 3556777999999998874
No 98
>PRK06921 hypothetical protein; Provisional
Probab=60.70 E-value=5 Score=42.73 Aligned_cols=31 Identities=29% Similarity=0.246 Sum_probs=21.6
Q ss_pred chhhHHHHhc---CCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFH---RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~---G~N~tifAYGqTGSGKTyTm~ 252 (716)
+...++.+-. +..-.++-||++|+||||.+.
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 4445554432 234568999999999999985
No 99
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=60.45 E-value=6.4 Score=39.55 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=13.5
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
-++.+|.||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 68999999999999985
No 100
>PRK09183 transposase/IS protein; Provisional
Probab=60.03 E-value=5.8 Score=42.06 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.2
Q ss_pred cEEEeCCCCCCCccccCC
Q 042351 236 TCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~G 253 (716)
.++-+|++|+||||.+..
T Consensus 104 ~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred eEEEEeCCCCCHHHHHHH
Confidence 466899999999998854
No 101
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=59.93 E-value=3.3 Score=37.70 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.5
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999876
No 102
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=59.34 E-value=3.9 Score=46.20 Aligned_cols=54 Identities=17% Similarity=0.378 Sum_probs=35.0
Q ss_pred ceEEEeceecCCCCCcHHhhhhcchhhHH-HHhc--C--CCccEEEeCCCCCCCccccC
Q 042351 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH--R--TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 199 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G--~N~tifAYGqTGSGKTyTm~ 252 (716)
...++|+.|-+.+..-+++-+.+..|+.. .++. | ....|+-||++|+|||+...
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 34567777777655555555554445543 3444 2 24568999999999999873
No 103
>PF13479 AAA_24: AAA domain
Probab=59.26 E-value=4 Score=41.73 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=16.7
Q ss_pred CccEEEeCCCCCCCccccCC
Q 042351 234 KATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~G 253 (716)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999998754
No 104
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=58.53 E-value=3.2 Score=42.15 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=14.6
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999999984
No 105
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=58.12 E-value=6.3 Score=37.60 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.1
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++..|++|||||.++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 25 RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred CcEEEECCCCCchhHHHH
Confidence 466788999999999874
No 106
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=57.81 E-value=5.6 Score=42.83 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=26.0
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.||.+.+ ++++.+. |...+-.|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 5666654 4444333 2222223443458889999999999884
No 107
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=57.80 E-value=5.2 Score=43.95 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.6
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+..++.+ ...|+-.|.||||||.+|.
T Consensus 137 L~~~v~~-~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 137 IRSAIDS-RLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3344443 2357889999999999984
No 108
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=56.90 E-value=4.4 Score=40.46 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=13.0
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
..+..|+.|||||+|+.
T Consensus 19 ~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp -EEEE-STTSSHHHHHH
T ss_pred CEEEECCCCCChHHHHH
Confidence 46678999999999885
No 109
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=56.45 E-value=5.4 Score=44.34 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=27.2
Q ss_pred CCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 212 VTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 212 asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
..|+.+|+.++..+. ......+|.-|..|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 468888888655443 344456788999999999987
No 110
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=55.74 E-value=4.2 Score=36.91 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=14.1
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999876
No 111
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=55.34 E-value=4.1 Score=38.81 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=13.3
Q ss_pred ccEEE-eCCCCCCCcccc
Q 042351 235 ATCFA-YGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifA-YGqTGSGKTyTm 251 (716)
..|++ .|.||+||||+-
T Consensus 53 pLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CEEEEeecCCCCcHHHHH
Confidence 34555 599999999975
No 112
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=54.77 E-value=6.3 Score=39.27 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=20.3
Q ss_pred hhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 223 EPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 223 ~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+++..++.. ...+.-.|++|||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3444455554 3457888999999999874
No 113
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.06 E-value=7.6 Score=44.66 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=36.1
Q ss_pred HHhcCCCccEEEeCCCCCCCccccCC--------------------CCcc-----chHHHHHHHhhhccccceeeEEEEE
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTMQP--------------------LPLK-----ASHDILRLMHQMHRSQGFQLYVSFF 282 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm~G--------------------l~~~-----a~~~if~~i~~~~~~~~~~V~vS~~ 282 (716)
.+.+|.+. +|++|||||||+.... ..|+ ..+.|...+....+...|.-++-.+
T Consensus 107 ~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~ 184 (482)
T KOG0335|consen 107 IISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSV 184 (482)
T ss_pred eeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceee
Confidence 34455554 9999999999998631 1122 2244444444434445567777778
Q ss_pred EEecC
Q 042351 283 EIYGG 287 (716)
Q Consensus 283 EIYne 287 (716)
.+|++
T Consensus 185 ~~ygg 189 (482)
T KOG0335|consen 185 VVYGG 189 (482)
T ss_pred eeeCC
Confidence 88988
No 114
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=53.67 E-value=60 Score=35.42 Aligned_cols=55 Identities=31% Similarity=0.520 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 042351 637 EEDLVSAHRKQVEETMDVVREEM-NLLVEADQPGNQLDIYICKLNALLS-------KKAAVIVQLQTRLAQ 699 (716)
Q Consensus 637 EE~LIaaHR~~IeetmeivkEEm-~LL~~vdqpg~diD~Yvt~L~~ILs-------~K~~~I~~Lq~rL~~ 699 (716)
||+|+.|--+ .||.-|+.+.-| +||. .|+|.| .||..++. +-.++|..|+.+|..
T Consensus 175 dEelrqA~eK-fEESkE~aE~sM~nlle------~d~eqv-sqL~~Li~aqLdfhrqs~~iL~~l~~~l~~ 237 (366)
T KOG1118|consen 175 DEELRQALEK-FEESKELAEDSMFNLLE------NDVEQV-SQLSALIQAQLDFHRQSTQILQELQMKLFS 237 (366)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHh------cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666555 499999999999 7775 455554 77777776 337788888887764
No 115
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=53.32 E-value=12 Score=39.34 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=29.5
Q ss_pred cCCCCCcHHhhhhcchhhHHHHhcCC--CccEEEeCCCCCCCcccc
Q 042351 208 LNEDVTNEEVYSETVEPIVPLIFHRT--KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 208 Fd~~asQeeVy~~~v~pLV~~vl~G~--N~tifAYGqTGSGKTyTm 251 (716)
|++-..|++|-.. .+.+++.+.... -..++-||+.|.|||...
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 4555788888876 777787776532 346899999999998653
No 116
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=53.21 E-value=4.8 Score=36.52 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=14.2
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999999885
No 117
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=53.15 E-value=1.2e+02 Score=29.15 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=59.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHH------------HHHHHHHH
Q 042351 627 DDDLNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKK------------AAVIVQLQ 694 (716)
Q Consensus 627 ~e~I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K------------~~~I~~Lq 694 (716)
...+++|+++=|.+=...|+.+++.++-++++|. .+++.....+..=..+|+.+++.. ..-|..|.
T Consensus 38 ~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~ 115 (132)
T PF05597_consen 38 SKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVK--SRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALS 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3578999999999999999999999999998875 445666666666666677766654 34566788
Q ss_pred HHHHHHHHHHHH
Q 042351 695 TRLAQFQRHLNE 706 (716)
Q Consensus 695 ~rL~~F~~~L~e 706 (716)
.|+++....|.+
T Consensus 116 ~rId~L~~~v~~ 127 (132)
T PF05597_consen 116 ARIDQLTAQVER 127 (132)
T ss_pred HHHHHHHHHHHH
Confidence 888887777654
No 118
>PHA00729 NTP-binding motif containing protein
Probab=53.15 E-value=7.6 Score=40.60 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=23.1
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
++.++..+..|.-..|+.+|.+|+||||...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 3445666655544579999999999999775
No 119
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=52.75 E-value=48 Score=40.46 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.2
Q ss_pred cCCCccEEEeCCCCCCCccccC
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|.|.||+.-|.+|||||.|..
T Consensus 88 ~~~~QsIiisGESGaGKTes~K 109 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENTK 109 (717)
T ss_pred cCCCCeEEEecCCCCChhHHHH
Confidence 5899999999999999999983
No 120
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=52.35 E-value=15 Score=41.32 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=36.9
Q ss_pred ceEEEeceecCCCCCcHHhhhhcchhhHHHHhc--C--CCccEEEeCCCCCCCcccc
Q 042351 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFH--R--TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 199 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~--G--~N~tifAYGqTGSGKTyTm 251 (716)
...+.||.+.+.-.--..+.+.++-.++..++. | .---|.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 456788888766655566666666666666653 2 2235778999999999974
No 121
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=51.87 E-value=47 Score=40.24 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=25.9
Q ss_pred HhhhhcchhhHHHHh-cCCCccEEEeCCCCCCCccccC
Q 042351 216 EVYSETVEPIVPLIF-HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 216 eVy~~~v~pLV~~vl-~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.||.- +......++ .|.|.||+.-|.+|||||.+..
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 104 (679)
T cd00124 68 HVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENTK 104 (679)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 35543 333334444 4899999999999999999873
No 122
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=51.83 E-value=7 Score=41.76 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=24.7
Q ss_pred CCCcHHhhhhcchhhHHHHhc--CCCccEEEeCCCCCCCccccC
Q 042351 211 DVTNEEVYSETVEPIVPLIFH--RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 211 ~asQeeVy~~~v~pLV~~vl~--G~N~tifAYGqTGSGKTyTm~ 252 (716)
-..|+++.+. +..++..... +....++-||+.|+|||+...
T Consensus 6 ~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 6 FIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3456666654 3334433222 222347789999999998774
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=51.78 E-value=6.7 Score=42.12 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=16.7
Q ss_pred cCC-CccEEEeCCCCCCCccccC
Q 042351 231 HRT-KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~-N~tifAYGqTGSGKTyTm~ 252 (716)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 3456669999999999874
No 124
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=51.61 E-value=7.6 Score=42.83 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=19.7
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.++..++.+ ...|+..|.||||||.+|.
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHHH
Confidence 344444443 3457888999999999984
No 125
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=51.58 E-value=5.8 Score=41.72 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=16.7
Q ss_pred cCCCccEEEeCCCCCCCccccC
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.-.+..++..|..|||||+||.
T Consensus 10 ~~~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 10 RSTEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp HS-SSEEEEEE-TTSSHHHHHH
T ss_pred hCCCCCEEEEeCCCCCchHHHH
Confidence 3367788888999999999994
No 126
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.48 E-value=8.3 Score=43.56 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=25.7
Q ss_pred CCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 212 VTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 212 asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..|+.+... ...|...+-.+.-..++-||++|+|||+...
T Consensus 15 vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 15 VGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred cCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 344555433 3334444445555577789999999998774
No 127
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=51.24 E-value=6.1 Score=43.83 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=19.3
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
++..+.. ....|+..|.||||||++|.
T Consensus 154 ~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 154 FLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 3433333 34558889999999999984
No 128
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=50.22 E-value=6 Score=36.82 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=13.6
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999975
No 129
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=50.04 E-value=50 Score=40.01 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.2
Q ss_pred cCCCccEEEeCCCCCCCccccC
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|.|-||+.-|.+|||||.|..
T Consensus 83 ~~~~QsIiisGESGaGKTe~~K 104 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAAK 104 (674)
T ss_pred cCCCceEEEEcCCCCCcchHHH
Confidence 5899999999999999999973
No 130
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=49.41 E-value=9.1 Score=39.40 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=13.7
Q ss_pred CCccEEEeCCCCCCCcccc
Q 042351 233 TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm 251 (716)
.+-.+++.|+.|||||+.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 4557899999999999865
No 131
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=48.84 E-value=7 Score=41.93 Aligned_cols=17 Identities=41% Similarity=0.477 Sum_probs=14.3
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.|.-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45566999999999985
No 132
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=48.48 E-value=8.2 Score=46.09 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=29.9
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
-.||.+++.+ .... .++..+..++...++-||++|+|||+...
T Consensus 151 ~~~~~iiGqs----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr 193 (615)
T TIGR02903 151 RAFSEIVGQE----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAAR 193 (615)
T ss_pred CcHHhceeCc----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 4677776543 3332 34555566777789999999999998773
No 133
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=48.34 E-value=4.9 Score=45.16 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=28.0
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHH-HHhc--C--CCccEEEeCCCCCCCccccC
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVP-LIFH--R--TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G--~N~tifAYGqTGSGKTyTm~ 252 (716)
+.||.|-+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+...
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHH
Confidence 45555544433334444333333333 2222 2 23468999999999998763
No 134
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=48.31 E-value=58 Score=39.48 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred cCCCccEEEeCCCCCCCccccC
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|.|.||+.-|.+|||||.|..
T Consensus 85 ~~~~QsIiisGESGaGKTe~~K 106 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETTK 106 (674)
T ss_pred cCCCceEEEECCCCCCchhHHH
Confidence 5899999999999999999973
No 135
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=48.24 E-value=11 Score=37.41 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=17.5
Q ss_pred HHHhcCCCccEEEeCCCCCCCcccc
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+.+++|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 44555776 688899999999873
No 136
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=48.01 E-value=10 Score=43.25 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=18.4
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
+..+++|.| ++..++||||||.+
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445667877 78888999999976
No 137
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=47.12 E-value=6.2 Score=36.89 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=13.7
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999877
No 138
>PRK06547 hypothetical protein; Provisional
Probab=47.06 E-value=12 Score=37.33 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=18.8
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.++..+..+.---|..+|.+|||||+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444544444445666799999999875
No 139
>PTZ00424 helicase 45; Provisional
Probab=46.54 E-value=10 Score=41.93 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=18.9
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556788875 56789999999764
No 140
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.39 E-value=7.5 Score=43.80 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=16.5
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999984
No 141
>PRK13764 ATPase; Provisional
Probab=45.78 E-value=9.8 Score=45.28 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.2
Q ss_pred CCccEEEeCCCCCCCccccCC
Q 042351 233 TKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~G 253 (716)
....|+..|+||||||+++..
T Consensus 256 ~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 344589999999999999853
No 142
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=45.49 E-value=7.9 Score=34.96 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=13.7
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 5778999999999873
No 143
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=45.35 E-value=8.4 Score=38.29 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.9
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46888999999999965
No 144
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=45.35 E-value=14 Score=42.43 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.7
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.++-||++|+|||.+..
T Consensus 219 gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAK 235 (438)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998873
No 145
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=45.27 E-value=9 Score=38.55 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.4
Q ss_pred CCccEEEeCCCCCCCcccc
Q 042351 233 TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm 251 (716)
.-..+|..|+.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3456888999999999876
No 146
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=44.50 E-value=13 Score=45.75 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=20.9
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+..+.+|.|+.|+| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 355678999998887 9999999884
No 147
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=44.37 E-value=13 Score=42.07 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=23.6
Q ss_pred HHhhhhcchhhHHHHhcC----CCccEEEeCCCCCCCccccC
Q 042351 215 EEVYSETVEPIVPLIFHR----TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 215 eeVy~~~v~pLV~~vl~G----~N~tifAYGqTGSGKTyTm~ 252 (716)
...|......+..++.+- ...-|.-.|+||.|||+|+-
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 334444444444444443 25566778999999999984
No 148
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=44.18 E-value=6.4 Score=43.77 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=29.9
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..|.|+.|-+. +++=. -|+..+.+-.-+.|+.+|.+|||||+.+.
T Consensus 12 ~~~pf~~ivGq----~~~k~----al~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMKL----ALILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCHHHHhCh----HHHHH----HHHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 46888888654 44333 33334444333568899999999999874
No 149
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=43.95 E-value=12 Score=42.14 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=19.3
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 455677876 788999999999863
No 150
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=43.65 E-value=13 Score=37.43 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=20.1
Q ss_pred HHHhcCC---CccEEEeCCCCCCCccccC
Q 042351 227 PLIFHRT---KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 227 ~~vl~G~---N~tifAYGqTGSGKTyTm~ 252 (716)
|.++.|. ...+.-||.+|||||....
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4556664 6678899999999997653
No 151
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=43.36 E-value=12 Score=40.21 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=17.6
Q ss_pred CCCccEEEeCCCCCCCcccc
Q 042351 232 RTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm 251 (716)
.-+.+|.-+|+-|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45778899999999999987
No 152
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.27 E-value=10 Score=42.60 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=16.2
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...++-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567789999999999985
No 153
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=43.27 E-value=9.8 Score=40.04 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.4
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++-||++|+|||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457889999999999874
No 154
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.19 E-value=12 Score=42.03 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=18.4
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..++.|.| |++.++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 445678887 566779999999863
No 155
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=42.54 E-value=11 Score=40.55 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=14.7
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
-.|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 46899999999999865
No 156
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=42.52 E-value=12 Score=43.68 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=22.8
Q ss_pred chhhHHHHhcCCC--ccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTK--ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N--~tifAYGqTGSGKTyTm~ 252 (716)
|+..++..+.|.. ..++.+|++|+|||.|+.
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 5555666665543 467889999999999983
No 157
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=42.14 E-value=16 Score=41.38 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 212 VTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 212 asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
..|+.+.-. .++|-.-+-.|.-...+-||+.|+|||..-
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 456777755 666666666788888999999999999763
No 158
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=42.10 E-value=1.3e+02 Score=30.20 Aligned_cols=60 Identities=13% Similarity=0.317 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042351 639 DLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYNVL 710 (716)
Q Consensus 639 ~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE~l 710 (716)
+++..|+..|++-++=+.+-++.++ .+|..| .+|.. -.-|.++-++|....+++.++|..
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~~ka------d~vvsY-----qll~h-r~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQQKA------DDVVSY-----QLLQH-RREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhH-----HHHHh-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888888877777777766666 788888 44443 344566666666666666665543
No 159
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=42.03 E-value=15 Score=42.03 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=19.2
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
|+.+++|.| +++..+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 456678887 688889999999873
No 160
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.74 E-value=11 Score=41.79 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=26.6
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcC-CCccEEEeCCCCCCCccccC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHR-TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G-~N~tifAYGqTGSGKTyTm~ 252 (716)
.||.|.+ |+.+- +.+...+-.| ..-+++-||+.|+|||++..
T Consensus 14 ~~~~iiG----q~~~~----~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 14 YFRDIIG----QKHIV----TAISNGLSLGRIHHAWLLSGTRGVGKTTIAR 56 (363)
T ss_pred chhhccC----hHHHH----HHHHHHHHcCCCCeEEEEecCCCCCHHHHHH
Confidence 5666654 44333 3344444444 34568999999999998873
No 161
>PF05729 NACHT: NACHT domain
Probab=41.41 E-value=12 Score=35.34 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.7
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.|+-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 47889999999999884
No 162
>PLN03025 replication factor C subunit; Provisional
Probab=41.21 E-value=15 Score=39.90 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.2
Q ss_pred CCCccEEEeCCCCCCCccccC
Q 042351 232 RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm~ 252 (716)
|.-..++-||+.|+|||++..
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 333346779999999999985
No 163
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=40.83 E-value=11 Score=39.13 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=18.6
Q ss_pred CCccEEEeCCCCCCCccccCCCC
Q 042351 233 TKATCFAYGQTGSGKTYTMQPLP 255 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~Gl~ 255 (716)
....++-||..|+|||++...++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 34569999999999999886554
No 164
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.64 E-value=22 Score=45.10 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.3
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
+.+.-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 55667899999999876
No 165
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=40.32 E-value=10 Score=41.41 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=13.6
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
...||+|||||++.+.
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4569999999999873
No 166
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=40.07 E-value=15 Score=39.04 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.1
Q ss_pred cCCCccEEEeCCCCCCCccccC
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|....++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3444457889999999998873
No 167
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=40.03 E-value=14 Score=42.56 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=18.7
Q ss_pred hhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 223 EPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 223 ~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..++..+..|. .|+-||++|+|||+...
T Consensus 185 e~l~~~L~~~~--~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 185 ETILKRLTIKK--NIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHH
Confidence 33444444454 44559999999998763
No 168
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=39.56 E-value=16 Score=39.90 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=24.0
Q ss_pred CCcHHhhhhcchhhHHHHhc-C-CCccEEEeCCCCCCCccccC
Q 042351 212 VTNEEVYSETVEPIVPLIFH-R-TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 212 asQeeVy~~~v~pLV~~vl~-G-~N~tifAYGqTGSGKTyTm~ 252 (716)
..|+++-+. +..++..... + ....++-||++|+|||+...
T Consensus 28 vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 445555443 3333433322 2 23467889999999999885
No 169
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=39.23 E-value=18 Score=42.27 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=31.4
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+.||.+++.+..-..+.+. +..+ ...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHHH-hCcCCCEEEECCCCccHHHHH
Confidence 47888888866444444433 2222 367889999999999999765
No 170
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=38.93 E-value=11 Score=37.40 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=19.4
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccCC
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~G 253 (716)
+...+.| -+++-.|++|.|||..+-.
T Consensus 29 l~~~l~~--k~~vl~G~SGvGKSSLiN~ 54 (161)
T PF03193_consen 29 LKELLKG--KTSVLLGQSGVGKSSLINA 54 (161)
T ss_dssp HHHHHTT--SEEEEECSTTSSHHHHHHH
T ss_pred HHHHhcC--CEEEEECCCCCCHHHHHHH
Confidence 4455666 5677789999999998743
No 171
>PRK04195 replication factor C large subunit; Provisional
Probab=38.86 E-value=20 Score=41.37 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=22.5
Q ss_pred chhhHHHHhcCC-CccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRT-KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~-N~tifAYGqTGSGKTyTm~ 252 (716)
+..++.....|. .-.++-||++|+|||++..
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 444555555554 5578899999999999873
No 172
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=38.86 E-value=13 Score=45.03 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.6
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.+.|-||+..|.+|||||.++
T Consensus 82 ~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 82 TRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HTSEEEEEEEESTTSSHHHHH
T ss_pred cccccceeeccccccccccch
Confidence 588999999999999999996
No 173
>PRK10536 hypothetical protein; Provisional
Probab=38.79 E-value=18 Score=38.66 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=26.5
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
|.|-.|-+-+..|..... .+.+ +.-++..|++||||||...
T Consensus 52 ~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred cCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 555556555555544333 2233 3488999999999999763
No 174
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=38.36 E-value=13 Score=34.75 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=13.7
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
++-+|.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4679999999999874
No 175
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=38.14 E-value=18 Score=43.73 Aligned_cols=30 Identities=37% Similarity=0.376 Sum_probs=20.8
Q ss_pred chhhHHHHhc-----CCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFH-----RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~-----G~N~tifAYGqTGSGKTyTm~ 252 (716)
+..+++.+.+ |.+..++. -+||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 5666777666 33444444 499999999995
No 176
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=38.11 E-value=2.8e+02 Score=25.78 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042351 649 EETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYNV 709 (716)
Q Consensus 649 eetmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE~ 709 (716)
-.+-.|+=+.-.+| ++.+|..-+..=+..|..=|.||-+.|..+..++...+..|.+-+.
T Consensus 18 Rq~e~~FlqKr~~L-S~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~ 77 (106)
T PF11594_consen 18 RQMEAFFLQKRFEL-SAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQN 77 (106)
T ss_pred HHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666677 7999999999999999999999999999999999999999887553
No 177
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=37.95 E-value=15 Score=39.26 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=19.7
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+++..+.. +--++-+|++|+|||-++.
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 44444443 5577999999999998874
No 178
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=37.77 E-value=13 Score=31.06 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=13.0
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999877
No 179
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=37.72 E-value=35 Score=41.16 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCCcCCCChhhHhhhhhcCCCceE---------EEEEEeCCCCCCHHHHHHHHHHHHHhcccccC
Q 042351 423 GHIPFRGSKLTEVLRDSFVGDSRT---------VMISCISPSSGSCEHTINTLRYADRVKSLSKG 478 (716)
Q Consensus 423 ~hVPyRdSKLT~LLqdsLgGnskT---------~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~ 478 (716)
.+-||-...|-.++...|.|-... -=||.||- ++-..|.++.||.+|...
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG------DaRraldic~RA~Eia~~ 630 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG------DARRALDICRRAAEIAEE 630 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhh
Confidence 477888888999998888875100 01233332 456678888888887543
No 180
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.67 E-value=18 Score=38.83 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=24.5
Q ss_pred hhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 219 SETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 219 ~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
...+.||+ ..+.--+..+-.||++++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 33456666 455666778889999999999987
No 181
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=37.41 E-value=13 Score=41.65 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=25.4
Q ss_pred EEEeCCCCCCCccccCCCCccchHHHHHHHhhhccccceeeEEEEEEEecC
Q 042351 237 CFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGG 287 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne 287 (716)
|+-||.+||||||++. .+|+... .-.||+.++|-|.=
T Consensus 33 ~~iyG~sgTGKT~~~r--------~~l~~~n------~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVR--------QLLRKLN------LENVWLNCVECFTY 69 (438)
T ss_pred EEEeccCCCchhHHHH--------HHHhhcC------CcceeeehHHhccH
Confidence 5889999999999983 4444331 12577777776653
No 182
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.38 E-value=1.9e+02 Score=30.41 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=49.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 629 DLNALLKEEEDLVSAHRKQVEETMDVVREEM-NLLVEADQPGN---QLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHL 704 (716)
Q Consensus 629 ~I~~ILeEEE~LIaaHR~~IeetmeivkEEm-~LL~~vdqpg~---diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L 704 (716)
.++.+.+...+.+.+... .+..++-+.+|+ .|+++.++-.. .+..|..+|+..+....+.|.+|+.+++......
T Consensus 22 ~~~~~~~~~~~~~~~~~~-sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQ-SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666665555533 455555555555 55555555443 3667999999999988888888888888776544
Q ss_pred H
Q 042351 705 N 705 (716)
Q Consensus 705 ~ 705 (716)
+
T Consensus 101 ~ 101 (251)
T PF11932_consen 101 Q 101 (251)
T ss_pred H
Confidence 4
No 183
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=37.25 E-value=18 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.3
Q ss_pred hcCCCccEEEeCCCCCCCccccC
Q 042351 230 FHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 230 l~G~N~tifAYGqTGSGKTyTm~ 252 (716)
-.+.-..++-||++|+|||++..
T Consensus 48 ~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 48 KADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred hcCCCceEEEECCCCCCHHHHHH
Confidence 34555578889999999999874
No 184
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=37.22 E-value=16 Score=39.72 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.3
Q ss_pred hcCCCccEEEeCCCCCCCccccC
Q 042351 230 FHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 230 l~G~N~tifAYGqTGSGKTyTm~ 252 (716)
....+.-++-||+.|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 34567779999999999999984
No 185
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=37.01 E-value=19 Score=39.08 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=21.9
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+..++..++.+. ..++-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 445566666544 467778999999999874
No 186
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=36.99 E-value=21 Score=39.15 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=14.9
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..+.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 356667999999999984
No 187
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.82 E-value=1.8e+02 Score=26.41 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 670 NQLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNE 706 (716)
Q Consensus 670 ~diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~e 706 (716)
..+++.+..++.-+.+--..+..++.+|..++..|++
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777777788888888888888775
No 188
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=36.60 E-value=23 Score=36.41 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=24.0
Q ss_pred cchhhHHHHhcCC---CccEEEeCCCCCCCcccc
Q 042351 221 TVEPIVPLIFHRT---KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 221 ~v~pLV~~vl~G~---N~tifAYGqTGSGKTyTm 251 (716)
+.-+-++.++.|. ..+++.+|.+|+|||+-.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 3455677888764 677888899999999865
No 189
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.48 E-value=16 Score=40.23 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=15.6
Q ss_pred CCccEEEeCCCCCCCcccc
Q 042351 233 TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm 251 (716)
..+-|+..|+||||||+.-
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 4457899999999999754
No 190
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=35.95 E-value=15 Score=39.33 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCC----CcCCC--ChhhHhhhhhc----CCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCccc
Q 042351 413 ECIRALDNDQGH----IPFRG--SKLTEVLRDSF----VGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISK 482 (716)
Q Consensus 413 ~vI~AL~~~~~h----VPyRd--SKLT~LLqdsL----gGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~ 482 (716)
.|++||+..... =||-. .---.-||+-| ..-++|+++++- +.+| .|++|+|+--+..+.+..
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-----DidE---A~kLadri~vm~~G~i~Q 216 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-----DIDE---ALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-----CHHH---HHhhhceEEEecCCeEEE
Confidence 678888765542 24421 11111233322 234678877763 4554 579999998887666554
Q ss_pred C
Q 042351 483 R 483 (716)
Q Consensus 483 ~ 483 (716)
.
T Consensus 217 ~ 217 (309)
T COG1125 217 Y 217 (309)
T ss_pred e
Confidence 3
No 191
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.95 E-value=22 Score=40.85 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=19.1
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.|..+++|.+ +++..+||||||.+.
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 4556778886 566789999999864
No 192
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=35.93 E-value=25 Score=39.19 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=20.6
Q ss_pred hhHHHHhcCC---CccEEEeCCCCCCCccccC
Q 042351 224 PIVPLIFHRT---KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 224 pLV~~vl~G~---N~tifAYGqTGSGKTyTm~ 252 (716)
|.++..+.|. --|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 6677777774 345554 999999998774
No 193
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=35.87 E-value=23 Score=34.60 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCCcccc------CCCCccchHHHHHH
Q 042351 236 TCFAYGQTGSGKTYTM------QPLPLKASHDILRL 265 (716)
Q Consensus 236 tifAYGqTGSGKTyTm------~Gl~~~a~~~if~~ 265 (716)
.|+..|..|||||+.. +|+......++++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~ 40 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRA 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 3667899999999976 26665555555543
No 194
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=35.84 E-value=18 Score=42.50 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=28.2
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
-.|+.+++.+. .++.+...++......|+-||++|+|||+.-
T Consensus 62 ~~f~~iiGqs~--------~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEE--------GIKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHH--------HHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 46777776542 2333344455566677888999999999854
No 195
>PF13173 AAA_14: AAA domain
Probab=35.75 E-value=15 Score=34.13 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.0
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.++-+|+.|+|||+.|.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999999884
No 196
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=34.81 E-value=25 Score=42.63 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.9
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.|.|.||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 89 DKENQSIIISGESGAGKTENT 109 (677)
T ss_pred cCCCceEEEecCCCCcchHHH
Confidence 589999999999999999997
No 197
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=34.58 E-value=2.3e+02 Score=26.62 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=51.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHH--------HHHHHHHHHHH----HHHHHHHH
Q 042351 627 DDDLNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIY--------ICKLNALLSKK----AAVIVQLQ 694 (716)
Q Consensus 627 ~e~I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Y--------vt~L~~ILs~K----~~~I~~Lq 694 (716)
.+.++.+++.=|......+..+++.++-+++|..- .+++.....+.. -.++..+|.+= .+-|..|.
T Consensus 25 ~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~~--~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~ 102 (118)
T TIGR01837 25 SKFFNRLVKEGELAEKRGQKRFDESVDAAREEVKT--ALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALS 102 (118)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56788999999999999999999999999988622 222222111112 23344444431 35667788
Q ss_pred HHHHHHHHHHHH
Q 042351 695 TRLAQFQRHLNE 706 (716)
Q Consensus 695 ~rL~~F~~~L~e 706 (716)
.|+++..++|.+
T Consensus 103 ~RI~~Le~~l~~ 114 (118)
T TIGR01837 103 AKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHH
Confidence 888888777765
No 198
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=34.27 E-value=23 Score=43.19 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.2
Q ss_pred CCccEEEeCCCCCCCcccc
Q 042351 233 TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm 251 (716)
-|-.++.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4567888999999999876
No 199
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=33.98 E-value=17 Score=34.43 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.9
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
++..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999865
No 200
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=33.89 E-value=2.4e+02 Score=27.01 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=49.7
Q ss_pred CchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 625 HSDDDLNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAAVIVQLQTRLAQ 699 (716)
Q Consensus 625 ~~~e~I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~ 699 (716)
-.+..|.+||..=|.|+.+- |+|++.||+|-.+|-++ ..++..+.......|.-||..|..
T Consensus 64 fvEKTi~til~LheKvl~aK----dETI~~lk~EN~fLKeA----------l~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 64 FVEKTIGTILNLHEKVLDAK----DETIEALKNENRFLKEA----------LYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred hhhhHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35678999999988888874 89999999999988754 456777778888889888888764
No 201
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=33.88 E-value=21 Score=42.85 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=19.5
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+..++.|.+ ++..++||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3456677876 788889999999874
No 202
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=33.83 E-value=23 Score=36.05 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=22.6
Q ss_pred hhhHHHHhcC---CCccEEEeCCCCCCCcccc
Q 042351 223 EPIVPLIFHR---TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 223 ~pLV~~vl~G---~N~tifAYGqTGSGKTyTm 251 (716)
-+-++.++.| .+.+++.+|++|||||.-.
T Consensus 5 I~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 5 IPGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp STTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 3456778865 5788999999999998643
No 203
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=33.75 E-value=26 Score=35.46 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=21.6
Q ss_pred hhHHHHhcC-C--CccEEEeCCCCCCCccccC
Q 042351 224 PIVPLIFHR-T--KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 224 pLV~~vl~G-~--N~tifAYGqTGSGKTyTm~ 252 (716)
+=++.++.| . ...+..+|.+|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 446777864 3 3457899999999998764
No 204
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=33.40 E-value=20 Score=45.95 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=19.5
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccccCC
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm~G 253 (716)
.+++.+-+|... ++...+||||||+||..
T Consensus 424 ai~~a~~~g~r~-~Ll~maTGSGKT~tai~ 452 (1123)
T PRK11448 424 AVEKAIVEGQRE-ILLAMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHhccCC-eEEEeCCCCCHHHHHHH
Confidence 334444456554 44458999999999854
No 205
>PRK14531 adenylate kinase; Provisional
Probab=33.36 E-value=20 Score=35.50 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCCcccc------CCCCccchHHHHH
Q 042351 236 TCFAYGQTGSGKTYTM------QPLPLKASHDILR 264 (716)
Q Consensus 236 tifAYGqTGSGKTyTm------~Gl~~~a~~~if~ 264 (716)
-|+.+|..|||||+.- .|+......++++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr 38 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLR 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHH
Confidence 3788999999999875 3555444444443
No 206
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=33.34 E-value=20 Score=35.18 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.2
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999765
No 207
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.21 E-value=22 Score=38.38 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.6
Q ss_pred HHhcCCCccEEEeCCCCCCCcccc
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
++-+|+.-.|++.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 455799999999999999999887
No 208
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.97 E-value=23 Score=41.91 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=19.2
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
|..+++|.| |++..+||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 456788988 567889999999764
No 209
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=32.88 E-value=3e+02 Score=24.85 Aligned_cols=33 Identities=15% Similarity=0.406 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 671 QLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHL 704 (716)
Q Consensus 671 diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L 704 (716)
.++.|+.+|+.| +.++..+.+.=.+|..|-.+|
T Consensus 60 ~l~~~l~~Id~I-e~~V~~LE~~v~~LD~ysk~L 92 (99)
T PF10046_consen 60 ELQPYLQQIDQI-EEQVTELEQTVYELDEYSKEL 92 (99)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555443 344455555555555554444
No 210
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=32.85 E-value=31 Score=33.09 Aligned_cols=31 Identities=35% Similarity=0.417 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCCcccc------CCCCccchHHHHHHH
Q 042351 236 TCFAYGQTGSGKTYTM------QPLPLKASHDILRLM 266 (716)
Q Consensus 236 tifAYGqTGSGKTyTm------~Gl~~~a~~~if~~i 266 (716)
.|.-+|+.|||||+.. .|.+.....+++..+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~ 38 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFREL 38 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHH
Confidence 3678999999999876 344433334444443
No 211
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=32.60 E-value=20 Score=35.05 Aligned_cols=15 Identities=40% Similarity=0.611 Sum_probs=13.3
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+.+|..|||||+..
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999874
No 212
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.57 E-value=25 Score=38.49 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=32.3
Q ss_pred EeceecCCCCCcHHhhhhcchhh-HHHHhcCCC---ccEEEeCCCCCCCcccc
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPI-VPLIFHRTK---ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pL-V~~vl~G~N---~tifAYGqTGSGKTyTm 251 (716)
..+.|-+-+..-+.+=+.++-|+ ..++|.|.- ..|+.||+.|+||+|.-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 33444444444445555555554 457777754 56999999999999965
No 213
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.49 E-value=18 Score=41.29 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=14.6
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.++-.|+||+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999985
No 214
>PRK07261 topology modulation protein; Provisional
Probab=32.34 E-value=20 Score=35.33 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=13.0
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999865
No 215
>PRK00131 aroK shikimate kinase; Reviewed
Probab=32.23 E-value=21 Score=34.23 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.9
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
-.|+.+|..|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999875
No 216
>PRK14974 cell division protein FtsY; Provisional
Probab=32.12 E-value=32 Score=38.07 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.3
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...|.-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4578889999999999984
No 217
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=32.12 E-value=31 Score=35.13 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=23.9
Q ss_pred chhhHHHHhcCC---CccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRT---KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~---N~tifAYGqTGSGKTyTm~ 252 (716)
.-+-++.++.|. ...+.-+|.+|+|||..+.
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 445578888754 5567899999999998763
No 218
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=31.82 E-value=23 Score=39.18 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=22.2
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+..++..++.+ .+.++-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~-~~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAA-RLAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhC-CCeEEEECCCCCCHHHHHH
Confidence 34455555654 3688999999999998874
No 219
>PRK10865 protein disaggregation chaperone; Provisional
Probab=31.72 E-value=24 Score=43.96 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.4
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
+.++-+|++|+|||++..
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCK 616 (857)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568888999999999763
No 220
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.55 E-value=56 Score=40.94 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=14.6
Q ss_pred CCccEEEeCCCCCCCcccc
Q 042351 233 TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm 251 (716)
..+..+-+|+||||||.-|
T Consensus 24 ~~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3445567899999999876
No 221
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=31.49 E-value=13 Score=40.01 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.4
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 478889999999999999755
No 222
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=31.41 E-value=31 Score=34.95 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=23.5
Q ss_pred chhhHHHHhcCC---CccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRT---KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~---N~tifAYGqTGSGKTyTm~ 252 (716)
.-+-++.++.|. ...+.-+|++|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 445678888653 4567889999999998764
No 223
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=31.33 E-value=28 Score=35.45 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=23.5
Q ss_pred chhhHHHHhcC---CCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHR---TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G---~N~tifAYGqTGSGKTyTm~ 252 (716)
.-+-+|.++.| ....+.-+|++|||||..+.
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLCH 37 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHHH
Confidence 34557788876 45567889999999998763
No 224
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=31.14 E-value=19 Score=40.66 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=15.8
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
+--++.+|.||||||..|.
T Consensus 42 ~~h~~i~g~tGsGKt~~i~ 60 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIR 60 (410)
T ss_pred hccEEEEcCCCCCHHHHHH
Confidence 4468899999999998764
No 225
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=31.14 E-value=28 Score=36.84 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=18.9
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+.++..+..|. -|+-+|++|+|||...
T Consensus 11 ~~~~l~~l~~g~--~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGY--PVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCC--eEEEEcCCCCCHHHHH
Confidence 334444444454 4566899999999876
No 226
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=31.13 E-value=31 Score=35.57 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=21.3
Q ss_pred HhhhhcchhhHHHHhc-CCCccEEEeCCCCCCCcccc
Q 042351 216 EVYSETVEPIVPLIFH-RTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 216 eVy~~~v~pLV~~vl~-G~N~tifAYGqTGSGKTyTm 251 (716)
.+|..++.-|...+-. +....|.-.|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3444444444433333 33344555699999999877
No 227
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.99 E-value=19 Score=41.76 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=15.4
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..+.-.|++|+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 457778999999999984
No 228
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.89 E-value=45 Score=37.64 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=19.8
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
..|..+++|..+.+ .-+||||||-+.
T Consensus 90 ~aiP~~L~g~dvIg--lAeTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIG--LAETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEE--EeccCCCchhhh
Confidence 34567788888754 459999999886
No 229
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=30.72 E-value=25 Score=39.13 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.9
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
++.+|.||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999873
No 230
>PRK04328 hypothetical protein; Provisional
Probab=30.71 E-value=32 Score=36.11 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.7
Q ss_pred chhhHHHHhcC---CCccEEEeCCCCCCCccc
Q 042351 222 VEPIVPLIFHR---TKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 222 v~pLV~~vl~G---~N~tifAYGqTGSGKTyT 250 (716)
.-+-++.++.| ...+++-+|.+|+|||.-
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 34457788877 477889999999999853
No 231
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=30.64 E-value=21 Score=38.27 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=19.0
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488899999999999999876
No 232
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=30.59 E-value=36 Score=41.23 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=25.5
Q ss_pred HhhhhcchhhHHHHh-cCCCccEEEeCCCCCCCcccc
Q 042351 216 EVYSETVEPIVPLIF-HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 216 eVy~~~v~pLV~~vl-~G~N~tifAYGqTGSGKTyTm 251 (716)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 45643 333333333 489999999999999999996
No 233
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=30.57 E-value=23 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=14.0
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999875
No 234
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.13 E-value=20 Score=39.22 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.9
Q ss_pred CCccEEEeCCCCCCCccccC
Q 042351 233 TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~ 252 (716)
..-+|+-.|.||||||+.|.
T Consensus 142 ~~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLN 161 (312)
T ss_pred cCCcEEEECCCCCCHHHHHH
Confidence 44568899999999999984
No 235
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=30.12 E-value=34 Score=39.94 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=18.2
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
+..++.|.| +++..+||||||.+
T Consensus 152 ip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHH
Confidence 456678876 57788999999965
No 236
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=29.99 E-value=20 Score=41.44 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.6
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
-.|+-||++|+|||+...
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 358999999999999974
No 237
>PRK08118 topology modulation protein; Reviewed
Probab=29.97 E-value=24 Score=34.78 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.7
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+-.|+.|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999643
No 238
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=29.90 E-value=18 Score=35.21 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=15.1
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
...+-||.+|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 456789999999999883
No 239
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=29.84 E-value=24 Score=40.55 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=18.8
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+..+++|.|+. ...+||||||.+.
T Consensus 117 ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEE--EECCCCChHHHHH
Confidence 456678898864 4569999999764
No 240
>PHA02653 RNA helicase NPH-II; Provisional
Probab=29.81 E-value=34 Score=41.41 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=18.0
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
++..+.+|. .++..|+||||||..
T Consensus 172 il~~i~~gk--dvIv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRK--PVVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCC--CEEEECCCCCCchhH
Confidence 444555665 459999999999975
No 241
>PRK00736 hypothetical protein; Provisional
Probab=29.70 E-value=1.6e+02 Score=24.94 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042351 672 LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYN 708 (716)
Q Consensus 672 iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE 708 (716)
.|+=|..|+.++-+...-|..|+.+|.....+|++-+
T Consensus 17 qe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 17 QEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999999998754
No 242
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=29.68 E-value=30 Score=38.34 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=21.0
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
++.+.+|.+..++...+||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34567787778899999999999874
No 243
>PRK02119 hypothetical protein; Provisional
Probab=29.56 E-value=1.6e+02 Score=25.40 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042351 672 LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYN 708 (716)
Q Consensus 672 iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE 708 (716)
.++=|..|+.++-+....|..|+.+|..+..+|++-+
T Consensus 21 QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 21 QENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667889999999999999999999999999998743
No 244
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=29.56 E-value=37 Score=39.00 Aligned_cols=19 Identities=42% Similarity=0.452 Sum_probs=16.1
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
-..|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567889999999999984
No 245
>PRK00295 hypothetical protein; Provisional
Probab=29.55 E-value=1.6e+02 Score=24.91 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042351 672 LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYN 708 (716)
Q Consensus 672 iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE 708 (716)
.++=|..|+.++.+...-|..|+.+|.....+|++-+
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677889999999999999999999999999998754
No 246
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=29.49 E-value=21 Score=34.37 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=11.6
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+..|.+|||||+..
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 356799999998653
No 247
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.46 E-value=2.8e+02 Score=29.22 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=34.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 634 LKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDI---YICKLNALLSKKAAVIVQLQTRLA 698 (716)
Q Consensus 634 LeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~---Yvt~L~~ILs~K~~~I~~Lq~rL~ 698 (716)
++.|+.+|..-+++ +.+|+.|-|.++.+..+...||.. =+.++..=..+..+.|..+.+.+.
T Consensus 27 ~e~ee~~L~e~~kE---~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~ 91 (230)
T PF10146_consen 27 LENEEKCLEEYRKE---MEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYK 91 (230)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655544 445666667888888776666544 444444433444455555554333
No 248
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=29.39 E-value=1.3e+02 Score=33.77 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=27.2
Q ss_pred CCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 212 VTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 212 asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
..|..+++- +-+.++.|-.-.++-.|+.|||||+-+
T Consensus 31 ~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 31 DEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred HHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEee
Confidence 345555543 234677898889999999999999987
No 249
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=29.38 E-value=22 Score=43.59 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.2
Q ss_pred CCccEEEeCCCCCCCccccC
Q 042351 233 TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~ 252 (716)
.|..++..|.||||||++|.
T Consensus 429 ~n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred CccceEEEcCCCCCHHHHHH
Confidence 35668999999999999985
No 250
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=29.38 E-value=48 Score=35.37 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=32.4
Q ss_pred HHHhcCCCcc-EEEeCCCCCCCccccCCCCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeec
Q 042351 227 PLIFHRTKAT-CFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDL 292 (716)
Q Consensus 227 ~~vl~G~N~t-ifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DL 292 (716)
..+++|.-+. |+-||..|+|||..+. .++..+... ....+||-.+.+.+|
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKSSLVK--------A~~~e~~~~--------glrLVEV~k~dl~~L 127 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKSSLVK--------ALLNEYADE--------GLRLVEVDKEDLATL 127 (287)
T ss_pred HHHHcCCcccceEEecCCCCChHHHHH--------HHHHHHHhc--------CCeEEEEcHHHHhhH
Confidence 4677898774 8999999999997663 333333221 122678877765544
No 251
>PHA02244 ATPase-like protein
Probab=29.29 E-value=35 Score=38.40 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=13.9
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.|+-+|++|+|||+...
T Consensus 121 PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAE 137 (383)
T ss_pred CEEEECCCCCCHHHHHH
Confidence 45669999999998763
No 252
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=29.28 E-value=37 Score=41.31 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.7
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.|.|-||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 488999999999999999997
No 253
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.22 E-value=1.2e+02 Score=25.65 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042351 672 LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYN 708 (716)
Q Consensus 672 iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE 708 (716)
.|+-|..|+.++-+....|..|+.+|..+..+|++-+
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677899999999999999999999999999998754
No 254
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=29.19 E-value=1.3e+02 Score=27.78 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=22.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHH
Q 042351 630 LNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIY 675 (716)
Q Consensus 630 I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Y 675 (716)
+-.|+++|.+.|... .+++.++++.++-.++..+.+-......+
T Consensus 20 L~~ll~~e~~~l~~~--d~~~l~~~~~~k~~l~~~l~~le~~r~~~ 63 (143)
T PF05130_consen 20 LLELLEEEREALISG--DIDELEELVEEKQELLEELRELEKQRQQL 63 (143)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443 55666666666666665544433333333
No 255
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=29.05 E-value=39 Score=40.95 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.7
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 489999999999999999997
No 256
>PF14772 NYD-SP28: Sperm tail
Probab=28.87 E-value=4.4e+02 Score=23.80 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=46.9
Q ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHHHHHHH-HHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 042351 630 LNALLKEEEDLVSAHRKQVE-ETMDVVREEM-NLLVEADQPGNQLDIYICKLNALLSKKAAVIVQLQTRLA----QFQRH 703 (716)
Q Consensus 630 I~~ILeEEE~LIaaHR~~Ie-etmeivkEEm-~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq~rL~----~F~~~ 703 (716)
+-.-|++|+.--..+...|. ...++++..+ .-|. .+|+.=-..-+.|+.+|-+.|..|+..|. +|...
T Consensus 22 ~~~kl~~E~~~s~~~~~~I~~~W~~i~~~~~~~eL~------~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deqy~~~ 95 (104)
T PF14772_consen 22 RREKLEEEEKESRANFEKINERWREILRKKKPQELR------KEIEEQKQACERIIDRKDALIKELQQELKEADEQYVKA 95 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555666665 4444444433 2222 46777778889999999999999999987 56655
Q ss_pred HHHh
Q 042351 704 LNEY 707 (716)
Q Consensus 704 L~ee 707 (716)
|+.+
T Consensus 96 lr~q 99 (104)
T PF14772_consen 96 LRKQ 99 (104)
T ss_pred HHHH
Confidence 5543
No 257
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=28.77 E-value=38 Score=41.11 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.8
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.|.|-||+.-|.+|||||.|.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 589999999999999999997
No 258
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=28.65 E-value=22 Score=34.72 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.5
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.|+..|++|||||..+.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999999873
No 259
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=28.63 E-value=37 Score=41.28 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=25.0
Q ss_pred HhhhhcchhhHHHHh-cCCCccEEEeCCCCCCCcccc
Q 042351 216 EVYSETVEPIVPLIF-HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 216 eVy~~~v~pLV~~vl-~G~N~tifAYGqTGSGKTyTm 251 (716)
.||.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus 73 Hiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 73 HIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 45543 333333333 489999999999999999996
No 260
>PF02478 Pneumo_phosprot: Pneumovirus phosphoprotein; InterPro: IPR003487 This family represents a phosphoprotein from Paramyxoviridae, which could be a putative RNA polymerase alpha subunit that may function in template binding [].; GO: 0003968 RNA-directed RNA polymerase activity
Probab=28.60 E-value=1.6e+02 Score=31.07 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=44.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 042351 627 DDDLNALLKEEEDLVSAHRKQVE-ETMDVVREEMNLLVEADQPGNQLDIYICKLNALLS 684 (716)
Q Consensus 627 ~e~I~~ILeEEE~LIaaHR~~Ie-etmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs 684 (716)
|..=++++-.=|+||+.-|+++. ..|+++|+||+.=+-++.-..-+-.-...|+.||+
T Consensus 199 DgIRDAMiG~REElI~~I~~Eak~kaae~m~eE~~qr~kig~gsvkLTekakeLnkive 257 (279)
T PF02478_consen 199 DGIRDAMIGLREELIEDIISEAKGKAAEMMREEESQRAKIGDGSVKLTEKAKELNKIVE 257 (279)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecHhHHHHHHHhh
Confidence 44558899999999999999986 89999999999877666544444455555666654
No 261
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=28.24 E-value=35 Score=34.58 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEeCCCCCCCcccc------CCCCccchHHHHHH
Q 042351 237 CFAYGQTGSGKTYTM------QPLPLKASHDILRL 265 (716)
Q Consensus 237 ifAYGqTGSGKTyTm------~Gl~~~a~~~if~~ 265 (716)
|+.+|..|||||+.- +|+......++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHH
Confidence 678999999999753 45555555555543
No 262
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=28.14 E-value=30 Score=36.23 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.1
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
+-+...+|++|+|||.|+.
T Consensus 32 ~~~~~~~GpagtGKtetik 50 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIK 50 (231)
T ss_dssp TTEEEEESSTTSSHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHH
Confidence 3444579999999999983
No 263
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.12 E-value=34 Score=41.45 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.4
Q ss_pred CCccEEEeCCCCCCCcccc
Q 042351 233 TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm 251 (716)
....|+-||+.|+||||..
T Consensus 700 ~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred cccceEEECCCCCcHHHHH
Confidence 3567999999999999975
No 264
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=28.11 E-value=37 Score=35.16 Aligned_cols=27 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred hhHHHHhcC---CCccEEEeCCCCCCCccc
Q 042351 224 PIVPLIFHR---TKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 224 pLV~~vl~G---~N~tifAYGqTGSGKTyT 250 (716)
+-++.++.| ...+++.+|.+|||||.-
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 446777765 366788899999999963
No 265
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=27.92 E-value=33 Score=34.41 Aligned_cols=32 Identities=34% Similarity=0.353 Sum_probs=25.2
Q ss_pred EEEeCCCCCCCcccc------CCCCccchHHHHHHHhh
Q 042351 237 CFAYGQTGSGKTYTM------QPLPLKASHDILRLMHQ 268 (716)
Q Consensus 237 ifAYGqTGSGKTyTm------~Gl~~~a~~~if~~i~~ 268 (716)
|---|+.|||||+.- .|+..-..+.+|+.+..
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~ 40 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMAR 40 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHH
Confidence 344599999999764 58888888899988765
No 266
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=27.91 E-value=23 Score=42.59 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=15.0
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.++..|+.|+|||||+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46789999999999985
No 267
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.88 E-value=1.8e+02 Score=25.01 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042351 672 LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYN 708 (716)
Q Consensus 672 iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE 708 (716)
.++=|..|+.++.+...-|..|+.+|.....+|++-+
T Consensus 20 Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 20 QEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667889999999999999999999999999998743
No 268
>PRK00846 hypothetical protein; Provisional
Probab=27.80 E-value=1.7e+02 Score=25.66 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042351 672 LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYN 708 (716)
Q Consensus 672 iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE 708 (716)
.|+=|..|+.++-+....|..|+.+|..+..+|++=+
T Consensus 25 Qe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 25 QEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667888999999999999999999999999999854
No 269
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=27.69 E-value=25 Score=43.98 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.8
Q ss_pred CCccEEEeCCCCCCCccccC
Q 042351 233 TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~ 252 (716)
.|+-.+.+|+||||||++|.
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 47788999999999999985
No 270
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=27.66 E-value=35 Score=40.36 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=19.3
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+|..+++|.+ +++..+||+|||.+.
T Consensus 21 ~i~~il~g~d--vlv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRD--VLVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCC--EEEEcCCCccHhHHH
Confidence 4456778887 466679999999974
No 271
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=27.63 E-value=38 Score=34.55 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=21.2
Q ss_pred hhHHHHhc-CC--CccEEEeCCCCCCCccccC
Q 042351 224 PIVPLIFH-RT--KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 224 pLV~~vl~-G~--N~tifAYGqTGSGKTyTm~ 252 (716)
+-++.++. |+ ..+++.+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 34667665 43 5578889999999998663
No 272
>PHA01747 putative ATP-dependent protease
Probab=27.59 E-value=28 Score=39.15 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=58.4
Q ss_pred hhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCCCCccchHHHHHHHhhhccccceeeEEEEEEEecCe------ee
Q 042351 217 VYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGK------VF 290 (716)
Q Consensus 217 Vy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~------v~ 290 (716)
++-.-+-|+|+.-..+.|.-++=.|+.|+||||+..-+ .... -+-|++++ +|
T Consensus 173 l~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f~ei------------s~fs----------p~~iSGG~~TvA~LFy 230 (425)
T PHA01747 173 LTLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTFVIL------------QELF----------NFRYYTEPPTYANLVY 230 (425)
T ss_pred HHHHhhhhheeccCCCCCeeEEEecCCCCChhhHHHHh------------hhcC----------CceeeCCCCchHHheE
Confidence 33344668887666788889999999999999986421 1100 00013332 34
Q ss_pred ecCCCCCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcc
Q 042351 291 DLLNDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATR 336 (716)
Q Consensus 291 DLL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R 336 (716)
|.-.....+.-+.| .|.+..+..+.-.+..++..+|..+..+-
T Consensus 231 N~~t~~~GLVg~~D---~VaFDEVa~i~f~~~kdiv~IMKdYMesG 273 (425)
T PHA01747 231 DAKTNALGLVFLSN---GLIFDEIQTWKDSNMRAINSTLSTGMENC 273 (425)
T ss_pred ecCCCceeEEeecc---EEEEEccccccCCCHHHHHHHHHHHhhcc
Confidence 55444444444444 35666666666677788888888777653
No 273
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=27.52 E-value=26 Score=32.41 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.5
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
-.+.-.|++|||||.++.
T Consensus 16 e~v~I~GpSGsGKSTLl~ 33 (107)
T cd00820 16 VGVLITGDSGIGKTELAL 33 (107)
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 345678999999999874
No 274
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.51 E-value=26 Score=40.81 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=25.7
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCCCc-cEEEeCCCCCCCcccc
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKA-TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~-tifAYGqTGSGKTyTm 251 (716)
+||.|.+ |+.+ ++.|-..+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~dliG----Qe~v----v~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVG----QDVL----VRILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcC----cHHH----HHHHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 5666654 3333 33333334445443 7999999999999975
No 275
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=27.49 E-value=23 Score=39.20 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=24.0
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..-|+-.+++..-+-++-.|.+|+|||..+.
T Consensus 13 ~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 13 KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 4455566667666778899999999999874
No 276
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=27.38 E-value=24 Score=37.82 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=14.2
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
-++-+|++|+|||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5889999999999876
No 277
>CHL00181 cbbX CbbX; Provisional
Probab=27.32 E-value=26 Score=37.74 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=14.0
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
++-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7789999999999763
No 278
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.08 E-value=31 Score=41.48 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=15.2
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999999985
No 279
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=27.02 E-value=42 Score=40.77 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.9
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.|.|-||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999996
No 280
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=26.83 E-value=29 Score=32.18 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=12.7
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999864
No 281
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=26.69 E-value=31 Score=40.53 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=14.5
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
-||..|+|.|||||--
T Consensus 193 Ii~H~GPTNSGKTy~A 208 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA 208 (700)
T ss_pred EEEEeCCCCCchhHHH
Confidence 3899999999999975
No 282
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=26.68 E-value=24 Score=42.61 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=29.6
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
..+.|+.+++....-..+.+. +.. +...+..|+-+|.+|||||+.-
T Consensus 371 ~n~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 371 VDSEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 346677777655433333332 222 3467789999999999999854
No 283
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.67 E-value=60 Score=36.03 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=15.5
Q ss_pred CccEEEeCCCCCCCccccCC
Q 042351 234 KATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~G 253 (716)
|-.|+..|+.|+|||....+
T Consensus 177 NRliLlhGPPGTGKTSLCKa 196 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKA 196 (423)
T ss_pred eeEEEEeCCCCCChhHHHHH
Confidence 34466789999999988754
No 284
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=26.63 E-value=29 Score=29.15 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.0
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5667888999999874
No 285
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.58 E-value=48 Score=36.29 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=26.3
Q ss_pred cEEEeCCCCCCCcccc-----------------------CCCCccchHHHHHHHhhh
Q 042351 236 TCFAYGQTGSGKTYTM-----------------------QPLPLKASHDILRLMHQM 269 (716)
Q Consensus 236 tifAYGqTGSGKTyTm-----------------------~Gl~~~a~~~if~~i~~~ 269 (716)
.|+.||..|+|||..- .|-.++.++.||+.....
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ 277 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc
Confidence 5899999999999653 255677788888887663
No 286
>PRK08233 hypothetical protein; Provisional
Probab=26.56 E-value=28 Score=33.71 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=12.3
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|.--|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 287
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=26.46 E-value=32 Score=38.40 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.3
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.|+.-+|+..|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999999865
No 288
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=26.37 E-value=28 Score=40.71 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=19.5
Q ss_pred hHHHHhcCC-CccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRT-KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~-N~tifAYGqTGSGKTyTm 251 (716)
|...+..|. ...++-||+.|+|||.+.
T Consensus 33 L~~ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 33 LSYTILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 333344453 357899999999999986
No 289
>PRK05580 primosome assembly protein PriA; Validated
Probab=26.36 E-value=38 Score=41.02 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.3
Q ss_pred CccEEEeCCCCCCCcccc
Q 042351 234 KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm 251 (716)
...++.+|.||||||.+.
T Consensus 162 ~~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 162 FSPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCcEEEECCCCChHHHHH
Confidence 345899999999999875
No 290
>PRK14127 cell division protein GpsB; Provisional
Probab=26.29 E-value=2.1e+02 Score=26.67 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=25.8
Q ss_pred CCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042351 667 QPGNQ---LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEY 707 (716)
Q Consensus 667 qpg~d---iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~ee 707 (716)
-=||+ ||+|..++..=+..=.+-+..|++++.+.+..|.+-
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDEL 63 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34776 777777776656655666666666666666655543
No 291
>PRK06696 uridine kinase; Validated
Probab=26.29 E-value=42 Score=34.42 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred chhhHHHHh---cCCCccEEEeCCCCCCCcccc
Q 042351 222 VEPIVPLIF---HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 222 v~pLV~~vl---~G~N~tifAYGqTGSGKTyTm 251 (716)
++.|.+.++ .+....|...|.+|||||+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 344445554 244445666799999999865
No 292
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.20 E-value=25 Score=40.04 Aligned_cols=18 Identities=44% Similarity=0.501 Sum_probs=15.8
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 467889999999999985
No 293
>PRK06217 hypothetical protein; Validated
Probab=26.12 E-value=29 Score=34.34 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=13.0
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788899999999754
No 294
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.09 E-value=25 Score=37.56 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=14.4
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 355556999999999984
No 295
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=25.92 E-value=45 Score=39.59 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.1
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
-..+-.|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 456678999999999984
No 296
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=25.82 E-value=38 Score=41.93 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=20.4
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
...+++.+-++ ..|+..|+||||||..+
T Consensus 10 ~~~i~~~l~~~--~~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 10 LPELLTALKTA--PQVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHhC--CCEEEEcCCCCCHHHHH
Confidence 45556555444 35788999999999986
No 297
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=25.81 E-value=38 Score=39.77 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=30.5
Q ss_pred ceEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCc
Q 042351 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKT 248 (716)
Q Consensus 199 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKT 248 (716)
...|+||.+.+....-.++ ..++ .-..+.+++|+-+|.||+||-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~-----~~~a-kr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRV-----LELA-KRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccccchhhhccCCHHHHHH-----HHHH-HhhcCCCCcEEEecCCCccHH
Confidence 3468999998865322222 2222 234689999999999999993
No 298
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=25.70 E-value=45 Score=35.94 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=23.2
Q ss_pred chhhHHHHhcCC---CccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRT---KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~---N~tifAYGqTGSGKTyTm~ 252 (716)
..+-++.++.|. ...+.-||.+|||||..+.
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 445577788764 5567899999999998763
No 299
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=25.65 E-value=25 Score=31.38 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.6
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
|+..|..|+|||..+.
T Consensus 2 I~V~G~~g~GKTsLi~ 17 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIR 17 (119)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 6788999999998763
No 300
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.56 E-value=28 Score=39.41 Aligned_cols=18 Identities=44% Similarity=0.457 Sum_probs=15.3
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
-.+.-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356778999999999985
No 301
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=25.51 E-value=3.9e+02 Score=32.07 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042351 655 VREEMNLLVEADQPGNQLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEY 707 (716)
Q Consensus 655 vkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~ee 707 (716)
+.+|.++...+-.-=.|-|.++.+|..++....+.+..|+.+....|.-|.+|
T Consensus 375 le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e 427 (594)
T PF05667_consen 375 LEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEE 427 (594)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444333222345677889999999999999999999999999887765
No 302
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=25.17 E-value=34 Score=33.31 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.1
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999865
No 303
>PRK04406 hypothetical protein; Provisional
Probab=25.16 E-value=2.1e+02 Score=24.82 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042351 672 LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYN 708 (716)
Q Consensus 672 iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE 708 (716)
.|+=|..|+.++.+...-|..|+.+|.....+|++-+
T Consensus 23 QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 23 QEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677889999999999999999999999999997643
No 304
>PRK02496 adk adenylate kinase; Provisional
Probab=25.05 E-value=45 Score=32.80 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEeCCCCCCCcccc------CCCCccchHHHHHH
Q 042351 237 CFAYGQTGSGKTYTM------QPLPLKASHDILRL 265 (716)
Q Consensus 237 ifAYGqTGSGKTyTm------~Gl~~~a~~~if~~ 265 (716)
++-.|+.|||||... .|+......++++.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 667899999999865 46655555566544
No 305
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.02 E-value=29 Score=39.67 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=16.0
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...+...|++|+|||+|+.
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3467788999999999984
No 306
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=24.99 E-value=28 Score=34.72 Aligned_cols=15 Identities=40% Similarity=0.364 Sum_probs=12.7
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999987
No 307
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=24.95 E-value=28 Score=31.52 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.7
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999976
No 308
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.75 E-value=32 Score=40.97 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=26.3
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcC-CCccEEEeCCCCCCCcccc
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHR-TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G-~N~tifAYGqTGSGKTyTm 251 (716)
+||.|.+ |+.+.+. |...+-.| ...+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666654 5544443 33334445 3445789999999999987
No 309
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=24.69 E-value=34 Score=32.14 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=17.3
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 367788999999999999875
No 310
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.64 E-value=30 Score=40.15 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=26.1
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCC-CccEEEeCCCCCCCccccC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRT-KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~-N~tifAYGqTGSGKTyTm~ 252 (716)
+||.|.+ |+.+.. .|...+-.|. ..+++-||+.|+|||.+..
T Consensus 16 ~f~dvVG----Qe~iv~----~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 16 FFRDVIH----QDLAIG----ALQNALKSGKIGHAYIFFGPRGVGKTTIAR 58 (484)
T ss_pred CHHHHhC----hHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 4555543 444443 3444444454 3358999999999999863
No 311
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.63 E-value=30 Score=42.40 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042351 641 VSAHRKQVEETMDVVREEMNLLV 663 (716)
Q Consensus 641 IaaHR~~IeetmeivkEEm~LL~ 663 (716)
--+||.+||.--.++|.--.-|.
T Consensus 674 W~~~~~~~~~~frll~~a~~~l~ 696 (767)
T PRK14723 674 WLLWAEAADGAFRTLRHAWDALP 696 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999998765555
No 312
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=24.41 E-value=31 Score=40.37 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=14.2
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4889999999999875
No 313
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=24.14 E-value=48 Score=34.76 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=20.3
Q ss_pred HHHHhcC---CCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHR---TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G---~N~tifAYGqTGSGKTyTm 251 (716)
++.++.| ....++.||..|||||.-.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~ 40 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFA 40 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHH
Confidence 5666765 4678899999999999643
No 314
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=24.10 E-value=41 Score=39.31 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=31.5
Q ss_pred ceEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 199 RHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 199 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
...+.||.+++....-..+.+. +.. +...+..|+-+|.+||||++..
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~-----~~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQ-----ARK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred cccccccceeECCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCccHHHHH
Confidence 3468899988765433333332 222 2346888999999999999865
No 315
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=24.10 E-value=65 Score=34.92 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCCccccC-----C------CCccchHHHHHHHh
Q 042351 236 TCFAYGQTGSGKTYTMQ-----P------LPLKASHDILRLMH 267 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~-----G------l~~~a~~~if~~i~ 267 (716)
.|+.-|.+|||||..|. | +|+..+..+...+.
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHH
Confidence 46788999999999983 3 45544555555444
No 316
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=24.02 E-value=26 Score=39.40 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=0.0
Q ss_pred EEEeCCCCCCCccccCC
Q 042351 237 CFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~G 253 (716)
+++||..|||||+++..
T Consensus 5 ~v~~GGrGS~KS~~~a~ 21 (387)
T PF04466_consen 5 IVLKGGRGSGKSSFIAQ 21 (387)
T ss_dssp -----------------
T ss_pred EEEECCCCchHHHHHHH
Confidence 57899999999999854
No 317
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=23.93 E-value=33 Score=42.07 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=28.9
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCCC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPL 254 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~Gl 254 (716)
.+|.+++.+. .+..+++.+.......++-||++|+|||+...++
T Consensus 184 ~~~~liGR~~--------ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~l 227 (758)
T PRK11034 184 GIDPLIGREK--------ELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_pred CCCcCcCCCH--------HHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHH
Confidence 5667777553 3444454444444455667999999999998654
No 318
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=23.86 E-value=28 Score=34.79 Aligned_cols=15 Identities=40% Similarity=0.353 Sum_probs=12.6
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|.-.|.+|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999875
No 319
>PRK14530 adenylate kinase; Provisional
Probab=23.82 E-value=37 Score=34.52 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.6
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|.+|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999865
No 320
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=23.76 E-value=42 Score=39.98 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=17.7
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.++ ++.++||+|||.+.
T Consensus 34 i~~il~g~dv--lv~apTGsGKTl~y 57 (607)
T PRK11057 34 IDAVLSGRDC--LVVMPTGGGKSLCY 57 (607)
T ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Confidence 4456788876 45579999999753
No 321
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=23.72 E-value=7.3e+02 Score=26.85 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=60.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 628 DDLNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLN 705 (716)
Q Consensus 628 e~I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~ 705 (716)
.-+..|...|-.+|.+|-+.=-|.+.+=++ |-.=-.+-|-||.+=.++|-.+|..=.+.-..+=.++.++|.+||
T Consensus 57 r~L~~LIk~EK~vi~s~e~~are~~~~A~~---L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK 131 (271)
T PF13805_consen 57 RKLQRLIKAEKSVIRSLESAARERKAAAKQ---LSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLK 131 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999998886666655544 444444557889999999999999999988999999999999988
No 322
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=23.68 E-value=35 Score=28.59 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 640 LVSAHRKQVEETMDVVREEMNLLV 663 (716)
Q Consensus 640 LIaaHR~~IeetmeivkEEm~LL~ 663 (716)
||+-|+.---+.-||+++||..-.
T Consensus 27 Li~h~~~knseleeWl~~e~E~~~ 50 (65)
T PF08599_consen 27 LIAHHAGKNSELEEWLRQEMEEQR 50 (65)
T ss_pred hhhccccccccHHHHHHHHHHHHH
Confidence 888898888899999999986543
No 323
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=23.66 E-value=31 Score=36.16 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.9
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
+.-.|++|||||+-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 466899999999877
No 324
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=23.60 E-value=34 Score=39.33 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=26.8
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCC-CccEEEeCCCCCCCccccC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRT-KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~-N~tifAYGqTGSGKTyTm~ 252 (716)
+||.|++. +.+ +..|...+-.|. .-.++-||+.|+|||.+..
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHHH
Confidence 67777653 333 334444444554 3457779999999998873
No 325
>PLN02200 adenylate kinase family protein
Probab=23.59 E-value=40 Score=35.22 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=23.2
Q ss_pred ccEEEeCCCCCCCcccc------CCCCccchHHHHHH
Q 042351 235 ATCFAYGQTGSGKTYTM------QPLPLKASHDILRL 265 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm------~Gl~~~a~~~if~~ 265 (716)
..|+..|.+|||||+-- +|+......++++.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~ 80 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRR 80 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHH
Confidence 45788999999999874 46666666666653
No 326
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=23.55 E-value=44 Score=38.17 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=24.1
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
-++.+-+|....-|..|.-||||||.+
T Consensus 40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 40 DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 357788899999999999999999987
No 327
>PRK14528 adenylate kinase; Provisional
Probab=23.53 E-value=41 Score=33.55 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCCcccc------CCCCccchHHHHHH
Q 042351 236 TCFAYGQTGSGKTYTM------QPLPLKASHDILRL 265 (716)
Q Consensus 236 tifAYGqTGSGKTyTm------~Gl~~~a~~~if~~ 265 (716)
.|+..|+.|||||+.. .|++.....++++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~ 38 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILRE 38 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHH
Confidence 3678999999999875 35555555566544
No 328
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=23.52 E-value=32 Score=35.11 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=14.0
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999775
No 329
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=23.49 E-value=83 Score=36.42 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCC-------------CCCCcCCCCh------hhHhhhhhcCCCceEEEEEEeCCCCCCHHHHHHHHHH
Q 042351 408 LLALKECIRALDND-------------QGHIPFRGSK------LTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRY 468 (716)
Q Consensus 408 L~aL~~vI~AL~~~-------------~~hVPyRdSK------LT~LLqdsLgGnskT~mIa~ISP~~~~~eeTlsTLrf 468 (716)
|+-|.+....|-+- ..|.-|.+.. ..++.| -..||-+=|.-|+-++.+.-+++-. ++
T Consensus 236 LwLLsELfe~LPEvGD~dkPklVfFfDEAHLLF~da~kall~~ieqvvr---LIRSKGVGv~fvTQ~P~DiP~~VL~-QL 311 (502)
T PF05872_consen 236 LWLLSELFEQLPEVGDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVR---LIRSKGVGVYFVTQNPTDIPDDVLG-QL 311 (502)
T ss_pred HHHHHHHHHhCccCCCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHH---HhhccCceEEEEeCCCCCCCHHHHH-hh
Confidence 67788888888441 2477776642 112211 1346666666665556666555432 33
Q ss_pred HHHh
Q 042351 469 ADRV 472 (716)
Q Consensus 469 A~R~ 472 (716)
++|+
T Consensus 312 GnrI 315 (502)
T PF05872_consen 312 GNRI 315 (502)
T ss_pred hhHH
Confidence 4444
No 330
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=23.48 E-value=33 Score=40.97 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=20.5
Q ss_pred hhhHHHHhcCC-CccEEEeCCCCCCCcccc
Q 042351 223 EPIVPLIFHRT-KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 223 ~pLV~~vl~G~-N~tifAYGqTGSGKTyTm 251 (716)
+-|...+-.|. .-.++-||+.|+|||.+.
T Consensus 34 ~~L~~~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 34 RTLTNAFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 33444444564 336888999999999986
No 331
>PRK14532 adenylate kinase; Provisional
Probab=23.40 E-value=37 Score=33.45 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCCcccc------CCCCccchHHHHHH
Q 042351 236 TCFAYGQTGSGKTYTM------QPLPLKASHDILRL 265 (716)
Q Consensus 236 tifAYGqTGSGKTyTm------~Gl~~~a~~~if~~ 265 (716)
.|+..|..|||||+.- .|+......++++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHH
Confidence 3788999999999864 35554445455543
No 332
>CHL00195 ycf46 Ycf46; Provisional
Probab=23.40 E-value=33 Score=39.99 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=15.1
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999876
No 333
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=23.31 E-value=24 Score=36.39 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=11.3
Q ss_pred EeCCCCCCCcccc
Q 042351 239 AYGQTGSGKTYTM 251 (716)
Q Consensus 239 AYGqTGSGKTyTm 251 (716)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999988
No 334
>PRK01172 ski2-like helicase; Provisional
Probab=23.27 E-value=47 Score=40.01 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.8
Q ss_pred HHhcCCCccEEEeCCCCCCCcccc
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+..|.| ++..++||||||...
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHHH
Confidence 3456766 677889999999863
No 335
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=23.27 E-value=45 Score=34.84 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=23.0
Q ss_pred chhhHHHHhc--CCCccEEEeCCCCCCCcccc
Q 042351 222 VEPIVPLIFH--RTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 222 v~pLV~~vl~--G~N~tifAYGqTGSGKTyTm 251 (716)
+..|++.+.+ .....|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4555666666 56777889999999999876
No 336
>PRK00300 gmk guanylate kinase; Provisional
Probab=23.19 E-value=33 Score=34.19 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.9
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45777899999999755
No 337
>PRK04325 hypothetical protein; Provisional
Probab=23.14 E-value=2.4e+02 Score=24.29 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042351 672 LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYN 708 (716)
Q Consensus 672 iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE 708 (716)
.|+=|..|+.++-+...-|..|+.+|.....+|++-+
T Consensus 21 QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 21 QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667889999999999999999999999999998754
No 338
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.11 E-value=43 Score=36.11 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=13.8
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+.||+.|+|||..-
T Consensus 213 gvllygppgtgktl~a 228 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCA 228 (435)
T ss_pred ceEEeCCCCCchhHHH
Confidence 5899999999999654
No 339
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=23.09 E-value=46 Score=40.29 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=24.7
Q ss_pred CCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 209 NEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 209 d~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.....|+.+...+ ....-.+...-++..|+||||||...
T Consensus 261 ~lt~~Q~~ai~~I----~~d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 261 ELTGAQKRVVAEI----LADLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCHHHHHHHHHH----HHhhhccCCceEEEECCCCCcHHHHH
Confidence 3444555544443 33333445556899999999999875
No 340
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=23.04 E-value=26 Score=39.27 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=13.4
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
--++..|.||||||.+|.
T Consensus 16 ~~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIR 33 (386)
T ss_dssp G-EEEEE-TTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 357889999999998764
No 341
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=22.94 E-value=34 Score=33.27 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.6
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+..|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999865
No 342
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=22.85 E-value=51 Score=40.56 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.8
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 589999999999999999996
No 343
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.84 E-value=37 Score=38.22 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=24.5
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCCC-ccEEEeCCCCCCCcccc
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRTK-ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N-~tifAYGqTGSGKTyTm 251 (716)
.||.|++ |+.+ ++.|...+-.|.- -.++-||+.|+|||.+.
T Consensus 14 ~~~eiiG----q~~~----~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHI----TRTIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHH----HHHHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 5666665 3333 2233333334433 34777999999999876
No 344
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=22.48 E-value=40 Score=36.80 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 635 KEEEDLVSAHRKQVEETMDVVREEM 659 (716)
Q Consensus 635 eEEE~LIaaHR~~IeetmeivkEEm 659 (716)
+..|.++.+.|++-..=+.|.|-+.
T Consensus 256 e~~e~i~~~Tr~yAKRQ~TWfr~~~ 280 (300)
T PRK14729 256 DIINLIVKNSFLYVKRQMTFFAKIP 280 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4456678888888888899988653
No 345
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=22.46 E-value=61 Score=35.21 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=22.8
Q ss_pred chhhHHHHhcCC---CccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRT---KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~---N~tifAYGqTGSGKTyTm~ 252 (716)
.-+-++.++.|. ...+.-||.+|||||....
T Consensus 87 g~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 87 GSKELDELLGGGIETQSITEFYGEFGSGKTQICH 120 (317)
T ss_pred CCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHH
Confidence 345566777753 5567889999999998763
No 346
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.33 E-value=50 Score=39.61 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=15.0
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
-.|+.||+.|+|||.+.
T Consensus 469 kGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ceEEEECCCCcchHHHH
Confidence 46999999999999875
No 347
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=22.28 E-value=55 Score=39.52 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.6
Q ss_pred cCCCccEEEeCCCCCCCcccc
Q 042351 231 HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm 251 (716)
.+.|-||+.-|.+|||||.|+
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 488999999999999999997
No 348
>PRK14527 adenylate kinase; Provisional
Probab=22.24 E-value=52 Score=32.69 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=21.1
Q ss_pred ccEEEeCCCCCCCcccc------CCCCccchHHHHH
Q 042351 235 ATCFAYGQTGSGKTYTM------QPLPLKASHDILR 264 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm------~Gl~~~a~~~if~ 264 (716)
..|+.+|.+|||||... .|+......++++
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r 42 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILR 42 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46889999999999865 2555555555554
No 349
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=22.21 E-value=35 Score=37.87 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.1
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
+.-.|++|+|||++|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999998
No 350
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=22.20 E-value=53 Score=39.98 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=29.0
Q ss_pred ceecCCCCCcHHhhhhcc------hhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 205 DAVLNEDVTNEEVYSETV------EPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 205 D~VFd~~asQeeVy~~~v------~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
++-+++++-|..+|...+ ..+++.+| |.|+.|.+ +||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 444555555555554332 35778888 99986554 9999999974
No 351
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.20 E-value=36 Score=39.78 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=25.9
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcC-CCccEEEeCCCCCCCcccc
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHR-TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G-~N~tifAYGqTGSGKTyTm 251 (716)
+||.|.+ |+.|- +-|...+-.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~divG----q~~v~----~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 14 CFQEVIG----QAPVV----RALSNALDQQYLHHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CHHHhcC----CHHHH----HHHHHHHHhCCCCeeEEEECCCCCCHHHHH
Confidence 5666654 44443 3344444344 4456889999999999875
No 352
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=22.18 E-value=35 Score=41.63 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=17.1
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
|.-++..|.||||||++|.
T Consensus 434 ~~n~~I~G~tGsGKS~~~~ 452 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLN 452 (785)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 7778999999999999984
No 353
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=22.09 E-value=47 Score=38.65 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=19.9
Q ss_pred HHHHhcCCC------ccEEEeCCCCCCCccccC
Q 042351 226 VPLIFHRTK------ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 226 V~~vl~G~N------~tifAYGqTGSGKTyTm~ 252 (716)
+..++++.+ -.|+-+|++|||||+.|.
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 335566643 357789999999999885
No 354
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=22.08 E-value=45 Score=38.05 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=15.7
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
.-++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568999999999999873
No 355
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=22.07 E-value=44 Score=33.08 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=46.8
Q ss_pred cCCCccEEEeCCCCCCCccccCCCCccchHHHHHHHhhhcc-ccceeeEEEEEEEecCeee-ecCCC---------CCcc
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHR-SQGFQLYVSFFEIYGGKVF-DLLND---------RKKL 299 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~~~-~~~~~V~vS~~EIYne~v~-DLL~~---------~~~l 299 (716)
..++..|+-+|.+||||+... +.|+.... ...-.|.|.|-.+..+.+. .|+.. ....
T Consensus 19 a~~~~pVlI~GE~GtGK~~lA------------~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~ 86 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELLA------------RAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKK 86 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHHH------------HHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBE
T ss_pred hCCCCCEEEEcCCCCcHHHHH------------HHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccC
Confidence 378899999999999998653 23333211 1122233332222222111 12211 0011
Q ss_pred eeEe-cCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcc
Q 042351 300 CMRE-DGKQQVCIVGLQEYRVSNVDTIRELIEKGNATR 336 (716)
Q Consensus 300 ~ire-d~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R 336 (716)
.+.+ -..+-+++.++.......-..++++|+.+.-.|
T Consensus 87 G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~ 124 (168)
T PF00158_consen 87 GLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTR 124 (168)
T ss_dssp HHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEEC
T ss_pred CceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcc
Confidence 1223 334456788887777776777788887654433
No 356
>PRK04040 adenylate kinase; Provisional
Probab=22.04 E-value=39 Score=34.02 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.0
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999876
No 357
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.03 E-value=50 Score=36.46 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=20.9
Q ss_pred hhhHHHHhcCC-CccEEEeCCCCCCCccccC
Q 042351 223 EPIVPLIFHRT-KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 223 ~pLV~~vl~G~-N~tifAYGqTGSGKTyTm~ 252 (716)
+.+...+-.|. ...++-||+.|+|||++..
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 33444444564 4478889999999998774
No 358
>PRK06762 hypothetical protein; Provisional
Probab=22.03 E-value=39 Score=32.51 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=12.7
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|.-.|..|||||+.-
T Consensus 4 li~i~G~~GsGKST~A 19 (166)
T PRK06762 4 LIIIRGNSGSGKTTIA 19 (166)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999753
No 359
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=21.99 E-value=49 Score=35.91 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=19.2
Q ss_pred hHHHHhcCC-CccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRT-KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~-N~tifAYGqTGSGKTyTm 251 (716)
|...+-.|. ...++-||+.|+|||.+.
T Consensus 26 l~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 26 LKNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333344553 446889999999999876
No 360
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.96 E-value=51 Score=38.24 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=26.2
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCCC-ccEEEeCCCCCCCccccC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRTK-ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N-~tifAYGqTGSGKTyTm~ 252 (716)
+||.|.+. +.+ ++.|...+-.|.- ..++-||+.|+|||++..
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 56666553 433 3333333344533 457899999999999873
No 361
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=21.76 E-value=36 Score=33.79 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.6
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999876
No 362
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=21.63 E-value=36 Score=37.95 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=20.1
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCccc
Q 042351 443 DSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISK 482 (716)
Q Consensus 443 nskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~ 482 (716)
...|++.+|= +.+| .|.+++|+--+..+.+..
T Consensus 186 ~giT~i~VTH-----DqeE---Al~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 186 LGITFVYVTH-----DQEE---ALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred cCCeEEEEEC-----CHHH---HhhhccceEEccCCceee
Confidence 3456666653 3343 567889988777766554
No 363
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.61 E-value=37 Score=38.89 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=15.0
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++..|++|+|||+|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346778999999999984
No 364
>PRK04182 cytidylate kinase; Provisional
Probab=21.46 E-value=66 Score=30.97 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCCcccc------CCCCccchHHHHHHHh
Q 042351 236 TCFAYGQTGSGKTYTM------QPLPLKASHDILRLMH 267 (716)
Q Consensus 236 tifAYGqTGSGKTyTm------~Gl~~~a~~~if~~i~ 267 (716)
.|+-.|..|||||... .|++.....++++.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~ 39 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELA 39 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHH
Confidence 3677899999999864 4655544455555544
No 365
>PHA02624 large T antigen; Provisional
Probab=21.43 E-value=56 Score=39.10 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=21.2
Q ss_pred HHHHhcCCCc--cEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKA--TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~--tifAYGqTGSGKTyTm 251 (716)
+..++.|.-. |++-||+.|||||+-.
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 5667777555 9999999999999855
No 366
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=21.40 E-value=39 Score=34.56 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=13.6
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.+.-.|+.|||||.+|.
T Consensus 27 i~~ivGpNGaGKSTll~ 43 (212)
T cd03274 27 FSAIVGPNGSGKSNVID 43 (212)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34467999999999983
No 367
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=21.33 E-value=41 Score=32.27 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=12.9
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
+|+-.|.+|||||+..
T Consensus 1 ~i~i~G~~GsGKSTla 16 (149)
T cd02027 1 VIWLTGLSGSGKSTIA 16 (149)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 3677899999998755
No 368
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.28 E-value=36 Score=41.57 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=24.4
Q ss_pred hhhHHHHhcCCCccEEEeCCCCCCCccccCCC
Q 042351 223 EPIVPLIFHRTKATCFAYGQTGSGKTYTMQPL 254 (716)
Q Consensus 223 ~pLV~~vl~G~N~tifAYGqTGSGKTyTm~Gl 254 (716)
..+++-+..+....++-||++|+|||....++
T Consensus 192 ~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 192 ERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHH
Confidence 35665555666667899999999999998653
No 369
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=21.22 E-value=43 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=15.4
Q ss_pred CccEEEeCCCCCCCcccc
Q 042351 234 KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm 251 (716)
+.-|+-.|.+|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 446899999999999876
No 370
>PRK03839 putative kinase; Provisional
Probab=21.21 E-value=41 Score=32.97 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=12.8
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+-.|..|||||+.-
T Consensus 3 I~l~G~pGsGKsT~~ 17 (180)
T PRK03839 3 IAITGTPGVGKTTVS 17 (180)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999864
No 371
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=20.95 E-value=38 Score=32.14 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=11.9
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+-.|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999644
No 372
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=20.89 E-value=57 Score=39.08 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 210 EDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 210 ~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
....|+.+...+. ...-......++..|+||||||...
T Consensus 236 lt~~Q~~ai~~I~----~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 236 LTRAQKRVVKEIL----QDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCHHHHHHHHHHH----HHhccCCCccEEEECCCCCcHHHHH
Confidence 3444555444432 2222333445799999999999865
No 373
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=20.76 E-value=39 Score=40.37 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=20.5
Q ss_pred hhhHHHHhcC-CCccEEEeCCCCCCCccccC
Q 042351 223 EPIVPLIFHR-TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 223 ~pLV~~vl~G-~N~tifAYGqTGSGKTyTm~ 252 (716)
+.|...+-.| ..-+++-||+.|+|||.++.
T Consensus 26 ~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 26 KILVNAILNNKLTHAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHH
Confidence 3344444344 34468899999999999873
No 374
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=20.70 E-value=44 Score=38.06 Aligned_cols=19 Identities=47% Similarity=0.606 Sum_probs=16.0
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...|+-+|++|+|||+...
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr 126 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQ 126 (412)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3569999999999998763
No 375
>COG1162 Predicted GTPases [General function prediction only]
Probab=20.66 E-value=1.1e+02 Score=33.52 Aligned_cols=85 Identities=15% Similarity=0.276 Sum_probs=48.4
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccCCCCccchHHHHHHHhhhccccceeeEEEEEEE-ecCeeeecCCCCCcceeEec
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQGFQLYVSFFEI-YGGKVFDLLNDRKKLCMRED 304 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EI-Yne~v~DLL~~~~~l~ired 304 (716)
+...|.|. +..-.||+|-|||.-+--+.+......-..-+...++.+-+-...+|.+ -++.|.|=
T Consensus 158 l~~~l~~~--~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDT------------ 223 (301)
T COG1162 158 LAELLAGK--ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDT------------ 223 (301)
T ss_pred HHHHhcCC--eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeC------------
Confidence 45666777 4444599999999887544442222221111223355666777777777 46655553
Q ss_pred CCCcEEEeCcEEEEe--cCHHHHHHHHHH
Q 042351 305 GKQQVCIVGLQEYRV--SNVDTIRELIEK 331 (716)
Q Consensus 305 ~~~~v~v~gLte~~V--~s~ee~~~ll~~ 331 (716)
.|..++.+ .+.+++...+..
T Consensus 224 -------PGf~~~~l~~~~~e~l~~~F~e 245 (301)
T COG1162 224 -------PGFRSLGLAHLEPEDLVQAFPE 245 (301)
T ss_pred -------CCCCccCcccCCHHHHHHHhHH
Confidence 24555555 456666665543
No 376
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=20.60 E-value=80 Score=35.42 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=25.1
Q ss_pred eecCCCCCcHHhhhhcchhhHHHHhcC---CCccEEEeCCCCCCCcccc
Q 042351 206 AVLNEDVTNEEVYSETVEPIVPLIFHR---TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 206 ~VFd~~asQeeVy~~~v~pLV~~vl~G---~N~tifAYGqTGSGKTyTm 251 (716)
.||+ +++.-+..+.- +.....| .+-.+.-.|++|+|||...
T Consensus 52 ~~~G----~~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 52 DFFG----MEEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred hccC----cHHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 5665 44444444433 3333344 3456788999999999865
No 377
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=20.52 E-value=43 Score=38.42 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=18.7
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCCCC
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQPLP 255 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~Gl~ 255 (716)
.-+=.++| ++-.|++|+||||...++.
T Consensus 204 ~fve~~~N--li~lGp~GTGKThla~~l~ 230 (449)
T TIGR02688 204 PLVEPNYN--LIELGPKGTGKSYIYNNLS 230 (449)
T ss_pred HHHhcCCc--EEEECCCCCCHHHHHHHHh
Confidence 33334555 5778999999999876543
No 378
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=20.49 E-value=67 Score=35.50 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=24.9
Q ss_pred hcchhhHHHHhc-CC---CccEEEeCCCCCCCcccc
Q 042351 220 ETVEPIVPLIFH-RT---KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 220 ~~v~pLV~~vl~-G~---N~tifAYGqTGSGKTyTm 251 (716)
.+.-+-++.++. |. ...+.-||+.|||||...
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 457778889988 43 446789999999999655
No 379
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=20.42 E-value=66 Score=39.57 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=16.3
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
.++++-+|+||+|||+...
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTV 506 (758)
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 3578999999999999873
No 380
>PRK01184 hypothetical protein; Provisional
Probab=20.41 E-value=60 Score=31.87 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=12.9
Q ss_pred cEEEeCCCCCCCccc
Q 042351 236 TCFAYGQTGSGKTYT 250 (716)
Q Consensus 236 tifAYGqTGSGKTyT 250 (716)
.|+..|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 467799999999985
No 381
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.39 E-value=6.1e+02 Score=28.95 Aligned_cols=34 Identities=32% Similarity=0.577 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhh
Q 042351 676 ICKLNALLSKK----AAVIVQLQTRLAQFQRHLNEYNV 709 (716)
Q Consensus 676 vt~L~~ILs~K----~~~I~~Lq~rL~~F~~~L~eeE~ 709 (716)
+.+...+.++| ++.|.+||.||.+++++|+|=|.
T Consensus 46 ~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ele~ 83 (395)
T PF10267_consen 46 AARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELEQ 83 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777765 89999999999999999998664
No 382
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=20.36 E-value=44 Score=33.96 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=15.7
Q ss_pred CccEEEeCCCCCCCccccCC
Q 042351 234 KATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~G 253 (716)
+..+.-.|++|||||..|..
T Consensus 28 ~~~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDA 47 (213)
T ss_pred cCEEEEECCCCCCHHHHHHH
Confidence 33566789999999999853
No 383
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=20.34 E-value=43 Score=19.85 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=9.1
Q ss_pred CCCCcHHHHHH
Q 042351 667 QPGNQLDIYIC 677 (716)
Q Consensus 667 qpg~diD~Yvt 677 (716)
-||+.+|.||.
T Consensus 4 tpgshvdsyve 14 (15)
T PF08111_consen 4 TPGSHVDSYVE 14 (15)
T ss_pred cCccchhhhcc
Confidence 48999999973
No 384
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=20.20 E-value=87 Score=36.28 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHhcC---CCccEEEeCCCCCCCccccCCCCccchHHHHHHHhhhccccceeeEEEEEE
Q 042351 226 VPLIFHR---TKATCFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQGFQLYVSFFE 283 (716)
Q Consensus 226 V~~vl~G---~N~tifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~E 283 (716)
++.++.| ...+++..|++|+|||.... +.+....+...-.+++||-|
T Consensus 252 lD~~lgGG~~~gs~~li~G~~G~GKt~l~~-----------~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 252 LDEMCGGGFFKDSIILATGATGTGKTLLVS-----------KFLENACANKERAILFAYEE 301 (484)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHHHHHH-----------HHHHHHHHCCCeEEEEEeeC
No 385
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=20.16 E-value=43 Score=38.14 Aligned_cols=19 Identities=47% Similarity=0.606 Sum_probs=16.1
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...|+-+|+||+|||+...
T Consensus 116 ~~~iLL~GP~GsGKT~lAr 134 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQ 134 (413)
T ss_pred CceEEEECCCCcCHHHHHH
Confidence 3579999999999998763
No 386
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=20.12 E-value=42 Score=34.02 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.0
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
+++-+|++|+|||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 77889999999999873
No 387
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=20.11 E-value=42 Score=27.87 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.0
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
|+-.|..|||||..+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999998766
Done!