Query 042351
Match_columns 716
No_of_seqs 354 out of 1799
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vvg_A Kinesin-2; motor protei 100.0 2.4E-85 8.1E-90 709.5 29.3 338 148-487 3-347 (350)
2 2heh_A KIF2C protein; kinesin, 100.0 5.8E-85 2E-89 712.9 28.1 323 147-478 49-385 (387)
3 1v8k_A Kinesin-like protein KI 100.0 1.3E-84 4.4E-89 714.3 27.9 325 147-480 69-407 (410)
4 3b6u_A Kinesin-like protein KI 100.0 4.6E-84 1.6E-88 703.6 25.8 336 146-487 18-365 (372)
5 3lre_A Kinesin-like protein KI 100.0 1.5E-83 5.1E-88 697.3 29.2 327 146-475 7-355 (355)
6 1ry6_A Internal kinesin; kines 100.0 8.2E-84 2.8E-88 699.8 26.7 326 150-482 1-338 (360)
7 1x88_A Kinesin-like protein KI 100.0 7.9E-84 2.7E-88 700.4 23.1 332 145-483 4-358 (359)
8 1goj_A Kinesin, kinesin heavy 100.0 2.3E-82 7.7E-87 687.8 29.6 328 147-488 4-343 (355)
9 3bfn_A Kinesin-like protein KI 100.0 2E-82 6.8E-87 693.1 24.6 334 145-488 17-360 (388)
10 1bg2_A Kinesin; motor protein, 100.0 2.9E-82 9.9E-87 679.8 25.2 311 147-475 5-325 (325)
11 2wbe_C Bipolar kinesin KRP-130 100.0 2.7E-82 9.2E-87 691.2 25.1 332 145-485 19-371 (373)
12 2y65_A Kinesin, kinesin heavy 100.0 3.6E-82 1.2E-86 688.1 25.5 325 146-487 8-345 (365)
13 1t5c_A CENP-E protein, centrom 100.0 6E-82 2E-86 683.0 26.9 325 147-486 2-339 (349)
14 2owm_A Nckin3-434, related to 100.0 1.3E-81 4.6E-86 698.6 29.7 340 145-487 34-426 (443)
15 3cob_A Kinesin heavy chain-lik 100.0 3.6E-81 1.2E-85 680.7 31.9 325 147-485 3-337 (369)
16 2zfi_A Kinesin-like protein KI 100.0 1.6E-81 5.5E-86 683.9 27.4 327 148-482 3-361 (366)
17 2h58_A Kinesin-like protein KI 100.0 1.2E-80 4.1E-85 668.6 30.1 315 148-476 3-329 (330)
18 4a14_A Kinesin, kinesin-like p 100.0 1.2E-80 3.9E-85 672.7 28.0 314 146-473 8-344 (344)
19 3gbj_A KIF13B protein; kinesin 100.0 2.3E-80 8E-85 672.1 27.5 323 149-474 1-349 (354)
20 2rep_A Kinesin-like protein KI 100.0 3.8E-80 1.3E-84 674.1 26.4 327 145-475 18-376 (376)
21 1f9v_A Kinesin-like protein KA 100.0 4.9E-79 1.7E-83 660.2 30.0 319 148-479 2-345 (347)
22 3t0q_A AGR253WP; kinesin, alph 100.0 9.4E-79 3.2E-83 658.7 29.3 321 148-479 4-348 (349)
23 3nwn_A Kinesin-like protein KI 100.0 5.2E-79 1.8E-83 662.0 22.8 320 146-475 21-359 (359)
24 3u06_A Protein claret segregat 100.0 5.8E-78 2E-82 664.0 27.1 325 146-483 56-390 (412)
25 2nr8_A Kinesin-like protein KI 100.0 2.6E-78 8.8E-83 656.3 23.7 320 146-475 20-358 (358)
26 3dc4_A Kinesin-like protein NO 100.0 2.5E-77 8.7E-82 645.4 24.8 305 146-479 19-339 (344)
27 4etp_A Kinesin-like protein KA 100.0 6.5E-77 2.2E-81 655.1 28.5 321 147-479 57-401 (403)
28 4h1g_A Maltose binding protein 100.0 5.5E-72 1.9E-76 657.8 28.9 320 146-476 371-712 (715)
29 2kin_B Kinesin; motor protein, 99.9 1.7E-27 5.7E-32 212.9 3.1 85 402-486 2-87 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 6.7E-25 2.3E-29 202.0 6.0 81 405-485 1-82 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 5.2E-24 1.8E-28 220.2 11.9 262 148-478 23-292 (298)
32 3ec2_A DNA replication protein 91.2 0.027 9.3E-07 53.6 -1.1 50 202-252 7-56 (180)
33 2w58_A DNAI, primosome compone 87.6 0.1 3.4E-06 50.4 -0.2 51 201-252 21-72 (202)
34 2qgz_A Helicase loader, putati 84.2 0.19 6.5E-06 52.7 -0.1 50 202-252 121-170 (308)
35 4etp_B Spindle POLE BODY-assoc 83.5 4.8 0.00017 42.4 10.0 240 148-457 58-310 (333)
36 1jbk_A CLPB protein; beta barr 80.6 0.53 1.8E-05 43.6 1.4 31 222-252 31-61 (195)
37 3t15_A Ribulose bisphosphate c 77.5 0.6 2E-05 48.4 0.8 37 215-251 13-53 (293)
38 2p65_A Hypothetical protein PF 77.0 0.59 2E-05 43.3 0.6 31 222-252 31-61 (187)
39 2bjv_A PSP operon transcriptio 76.0 0.81 2.8E-05 46.0 1.3 45 201-251 2-46 (265)
40 2kjq_A DNAA-related protein; s 73.9 1.2 4.2E-05 41.4 1.9 18 235-252 37-54 (149)
41 1g8p_A Magnesium-chelatase 38 73.1 0.65 2.2E-05 48.3 -0.3 45 200-252 19-63 (350)
42 3te6_A Regulatory protein SIR3 71.7 0.97 3.3E-05 47.9 0.7 25 228-252 39-63 (318)
43 1l8q_A Chromosomal replication 71.0 1.2 4.2E-05 46.1 1.3 49 201-252 7-55 (324)
44 3bos_A Putative DNA replicatio 71.0 1.3 4.6E-05 42.8 1.4 45 202-252 25-70 (242)
45 2r62_A Cell division protease 70.7 0.86 3E-05 45.7 -0.0 51 201-252 7-62 (268)
46 2v1u_A Cell division control p 70.0 1 3.5E-05 47.1 0.4 40 212-252 22-62 (387)
47 3h4m_A Proteasome-activating n 69.2 0.82 2.8E-05 46.3 -0.6 51 201-251 13-68 (285)
48 2chg_A Replication factor C sm 68.9 1.6 5.6E-05 41.2 1.5 22 231-252 35-56 (226)
49 1qde_A EIF4A, translation init 68.6 1.8 6.1E-05 42.0 1.7 23 226-250 45-67 (224)
50 1ixz_A ATP-dependent metallopr 68.3 0.57 2E-05 46.8 -2.0 17 236-252 51-67 (254)
51 2gxq_A Heat resistant RNA depe 67.8 1.9 6.6E-05 41.0 1.8 23 226-250 32-54 (207)
52 1vec_A ATP-dependent RNA helic 67.6 2.3 7.9E-05 40.5 2.3 24 226-251 34-57 (206)
53 3cf0_A Transitional endoplasmi 66.3 1.1 3.6E-05 46.5 -0.5 52 201-252 11-67 (301)
54 1d2n_A N-ethylmaleimide-sensit 66.0 2.3 7.7E-05 42.9 1.9 28 225-252 52-82 (272)
55 3uk6_A RUVB-like 2; hexameric 66.0 2.1 7E-05 44.9 1.7 47 201-252 40-88 (368)
56 3dkp_A Probable ATP-dependent 64.5 2.4 8.2E-05 41.8 1.8 23 226-250 60-82 (245)
57 1sxj_D Activator 1 41 kDa subu 63.4 2.3 7.8E-05 44.1 1.4 30 223-252 47-76 (353)
58 3d8b_A Fidgetin-like protein 1 62.9 1.4 4.9E-05 46.7 -0.2 51 202-252 81-135 (357)
59 2z4s_A Chromosomal replication 62.7 2 6.9E-05 47.1 0.9 48 201-252 101-148 (440)
60 1p9r_A General secretion pathw 62.6 2.5 8.5E-05 46.4 1.6 28 225-252 158-185 (418)
61 3bor_A Human initiation factor 62.0 1.7 5.9E-05 42.9 0.2 24 226-251 61-84 (237)
62 2pl3_A Probable ATP-dependent 61.7 2.9 0.0001 40.9 1.8 24 226-251 56-79 (236)
63 1iy2_A ATP-dependent metallopr 61.7 0.97 3.3E-05 46.0 -1.8 17 236-252 75-91 (278)
64 2qz4_A Paraplegin; AAA+, SPG7, 61.7 4 0.00014 40.3 2.8 20 233-252 38-57 (262)
65 3b9p_A CG5977-PA, isoform A; A 61.7 1.7 5.9E-05 44.2 0.1 51 201-251 17-71 (297)
66 2c9o_A RUVB-like 1; hexameric 61.4 3.2 0.00011 45.6 2.2 46 201-251 33-80 (456)
67 1sxj_C Activator 1 40 kDa subu 61.4 2.3 8E-05 44.4 1.1 42 203-252 23-64 (340)
68 3ly5_A ATP-dependent RNA helic 61.0 2.4 8.3E-05 42.7 1.1 24 225-250 84-107 (262)
69 3syl_A Protein CBBX; photosynt 60.7 3.6 0.00012 41.9 2.3 20 232-251 65-84 (309)
70 1fnn_A CDC6P, cell division co 60.6 4.1 0.00014 42.6 2.8 39 213-252 21-62 (389)
71 4b4t_K 26S protease regulatory 60.5 3 0.0001 46.0 1.7 52 200-251 167-223 (428)
72 3jvv_A Twitching mobility prot 60.2 2.7 9.3E-05 45.0 1.3 28 225-252 114-141 (356)
73 1t6n_A Probable ATP-dependent 59.9 3.3 0.00011 40.0 1.8 24 226-251 45-68 (220)
74 3pvs_A Replication-associated 59.7 4.2 0.00014 44.9 2.7 40 211-251 28-67 (447)
75 4b4t_M 26S protease regulatory 59.3 5.6 0.00019 43.9 3.7 52 200-251 176-232 (434)
76 2x8a_A Nuclear valosin-contain 58.6 1.2 4.1E-05 45.7 -1.7 50 202-251 7-61 (274)
77 3iuy_A Probable ATP-dependent 58.5 3.3 0.00011 40.3 1.6 24 226-251 51-74 (228)
78 2qby_A CDC6 homolog 1, cell di 58.5 2.4 8E-05 44.2 0.5 21 232-252 43-63 (386)
79 3fmo_B ATP-dependent RNA helic 58.2 3.5 0.00012 42.6 1.7 26 226-251 123-148 (300)
80 1wrb_A DJVLGB; RNA helicase, D 57.6 3.7 0.00013 40.7 1.7 24 226-251 54-77 (253)
81 3b6e_A Interferon-induced heli 57.6 1.8 6.3E-05 41.2 -0.5 23 227-251 43-65 (216)
82 1xwi_A SKD1 protein; VPS4B, AA 57.0 2 6.8E-05 45.0 -0.4 51 202-252 9-63 (322)
83 3llm_A ATP-dependent RNA helic 56.4 3.3 0.00011 40.9 1.1 26 224-251 68-93 (235)
84 3eiq_A Eukaryotic initiation f 56.1 4.5 0.00015 42.6 2.2 24 226-251 71-94 (414)
85 4b4t_L 26S protease subunit RP 55.7 3.8 0.00013 45.3 1.6 51 201-251 177-232 (437)
86 2oxc_A Probable ATP-dependent 55.3 4.3 0.00015 39.7 1.7 23 226-250 55-77 (230)
87 3ber_A Probable ATP-dependent 54.9 4.4 0.00015 40.4 1.8 24 226-251 74-97 (249)
88 3fe2_A Probable ATP-dependent 54.7 3.9 0.00013 40.4 1.3 24 226-251 60-83 (242)
89 2eyu_A Twitching motility prot 54.4 4.2 0.00014 41.4 1.6 20 233-252 24-43 (261)
90 3pfi_A Holliday junction ATP-d 54.0 5.5 0.00019 41.2 2.4 44 203-251 27-72 (338)
91 1hqc_A RUVB; extended AAA-ATPa 54.0 6.9 0.00023 40.0 3.1 45 203-252 10-56 (324)
92 1lv7_A FTSH; alpha/beta domain 53.9 5.8 0.0002 39.4 2.5 19 234-252 45-63 (257)
93 2qby_B CDC6 homolog 3, cell di 52.8 4.8 0.00016 42.1 1.7 39 213-252 24-63 (384)
94 3n70_A Transport activator; si 52.2 4.6 0.00016 36.7 1.3 20 232-251 22-41 (145)
95 2qp9_X Vacuolar protein sortin 51.6 3.1 0.00011 44.1 0.0 50 202-251 48-101 (355)
96 1q0u_A Bstdead; DEAD protein, 51.3 3.3 0.00011 40.1 0.1 24 226-251 35-58 (219)
97 3fht_A ATP-dependent RNA helic 51.2 5.5 0.00019 41.8 1.9 27 225-251 55-81 (412)
98 3eie_A Vacuolar protein sortin 51.0 2.6 8.8E-05 43.9 -0.7 50 202-251 15-68 (322)
99 3pxg_A Negative regulator of g 50.9 5.4 0.00019 44.0 1.8 42 203-252 178-219 (468)
100 3fmp_B ATP-dependent RNA helic 50.9 5 0.00017 43.8 1.6 25 226-250 123-147 (479)
101 1njg_A DNA polymerase III subu 50.8 5 0.00017 38.1 1.4 18 235-252 46-63 (250)
102 2j0s_A ATP-dependent RNA helic 50.0 5.3 0.00018 42.2 1.5 24 226-251 68-91 (410)
103 1ofh_A ATP-dependent HSL prote 49.9 5.1 0.00017 40.5 1.3 19 234-252 50-68 (310)
104 3pey_A ATP-dependent RNA helic 49.8 6 0.0002 41.1 1.9 26 226-251 36-61 (395)
105 3vfd_A Spastin; ATPase, microt 49.8 2.7 9.1E-05 45.0 -0.9 53 200-252 110-166 (389)
106 3co5_A Putative two-component 48.3 4.2 0.00014 37.0 0.3 23 232-254 25-47 (143)
107 1iqp_A RFCS; clamp loader, ext 47.5 5.8 0.0002 40.3 1.3 36 213-252 29-64 (327)
108 2ewv_A Twitching motility prot 47.4 5.6 0.00019 42.7 1.2 20 233-252 135-154 (372)
109 1s2m_A Putative ATP-dependent 47.1 6.4 0.00022 41.3 1.6 24 226-251 52-75 (400)
110 2z0m_A 337AA long hypothetical 46.8 6.4 0.00022 39.9 1.5 24 226-251 25-48 (337)
111 3nmd_A CGMP dependent protein 46.8 33 0.0011 28.5 5.4 30 673-702 39-68 (72)
112 1tue_A Replication protein E1; 46.7 5 0.00017 40.1 0.6 27 226-252 48-76 (212)
113 2fz4_A DNA repair protein RAD2 46.4 5.7 0.00019 39.5 1.0 22 228-251 104-125 (237)
114 3fho_A ATP-dependent RNA helic 46.2 7.8 0.00027 43.0 2.2 26 226-251 150-175 (508)
115 1u0j_A DNA replication protein 45.8 7.7 0.00026 40.0 1.9 29 224-252 91-122 (267)
116 2jlq_A Serine protease subunit 45.4 7.6 0.00026 42.5 1.9 26 224-250 10-35 (451)
117 2chq_A Replication factor C sm 45.3 5.4 0.00019 40.4 0.7 22 231-252 35-56 (319)
118 2i4i_A ATP-dependent RNA helic 44.9 7.2 0.00025 41.1 1.6 24 226-251 46-69 (417)
119 1gvn_B Zeta; postsegregational 44.4 12 0.00039 38.6 3.0 31 221-251 15-50 (287)
120 2oap_1 GSPE-2, type II secreti 44.4 6.5 0.00022 44.2 1.1 20 231-252 259-278 (511)
121 4b4t_I 26S protease regulatory 43.8 15 0.0005 40.6 3.8 51 201-251 178-233 (437)
122 4b4t_J 26S protease regulatory 43.4 13 0.00045 40.6 3.4 51 201-251 144-199 (405)
123 2zan_A Vacuolar protein sortin 43.2 4.1 0.00014 44.7 -0.7 52 201-252 130-185 (444)
124 4fcw_A Chaperone protein CLPB; 42.0 5.2 0.00018 40.6 -0.1 17 235-251 48-64 (311)
125 3u61_B DNA polymerase accessor 41.4 11 0.00038 38.6 2.3 19 234-252 48-66 (324)
126 3hu3_A Transitional endoplasmi 41.4 6.6 0.00023 43.8 0.6 50 202-251 201-255 (489)
127 3h1t_A Type I site-specific re 41.1 7.6 0.00026 43.7 1.0 27 225-252 190-216 (590)
128 2r44_A Uncharacterized protein 40.7 6.2 0.00021 40.8 0.2 18 235-252 47-64 (331)
129 1zxa_A CGMP-dependent protein 40.3 31 0.0011 28.2 4.2 32 674-705 25-56 (67)
130 1sxj_B Activator 1 37 kDa subu 39.9 9.6 0.00033 38.6 1.5 22 231-252 39-60 (323)
131 1xti_A Probable ATP-dependent 39.5 9.5 0.00033 39.7 1.5 24 226-251 39-62 (391)
132 3oiy_A Reverse gyrase helicase 39.5 9.5 0.00033 40.5 1.5 24 226-251 30-53 (414)
133 4b4t_H 26S protease regulatory 38.7 4.3 0.00015 45.2 -1.4 51 201-251 205-260 (467)
134 1w5s_A Origin recognition comp 38.6 7.3 0.00025 41.0 0.4 26 227-252 40-70 (412)
135 2v1x_A ATP-dependent DNA helic 38.6 14 0.00047 42.2 2.7 25 225-251 52-76 (591)
136 3i5x_A ATP-dependent RNA helic 38.4 11 0.00037 41.9 1.8 26 225-250 102-127 (563)
137 1r6b_X CLPA protein; AAA+, N-t 38.0 9 0.00031 44.7 1.1 43 203-253 184-226 (758)
138 1in4_A RUVB, holliday junction 37.9 13 0.00043 38.9 2.1 18 235-252 52-69 (334)
139 4fla_A Regulation of nuclear P 37.6 38 0.0013 32.0 5.1 13 672-684 105-117 (152)
140 1rif_A DAR protein, DNA helica 37.2 6.6 0.00022 39.7 -0.3 22 228-251 124-145 (282)
141 1deq_A Fibrinogen (alpha chain 37.0 65 0.0022 34.7 7.2 74 627-705 66-144 (390)
142 4a2p_A RIG-I, retinoic acid in 36.9 12 0.00041 41.0 1.8 25 225-251 15-39 (556)
143 1jr3_A DNA polymerase III subu 36.9 16 0.00054 37.9 2.6 19 234-252 38-56 (373)
144 4gp7_A Metallophosphoesterase; 36.4 8.3 0.00028 36.1 0.3 17 236-252 11-27 (171)
145 1n0w_A DNA repair protein RAD5 36.3 12 0.0004 36.3 1.4 31 222-252 9-42 (243)
146 2db3_A ATP-dependent RNA helic 35.9 14 0.00047 39.9 2.1 24 226-251 87-110 (434)
147 3lay_A Zinc resistance-associa 35.5 2E+02 0.0068 27.6 9.9 46 652-707 94-143 (175)
148 1sxj_E Activator 1 40 kDa subu 35.4 9.3 0.00032 39.6 0.5 16 237-252 39-54 (354)
149 1qvr_A CLPB protein; coiled co 35.0 9.3 0.00032 45.4 0.5 43 203-253 168-210 (854)
150 3tbk_A RIG-I helicase domain; 34.9 14 0.00046 40.4 1.8 24 226-251 13-36 (555)
151 1hv8_A Putative ATP-dependent 34.7 12 0.0004 38.4 1.2 25 226-251 37-61 (367)
152 2wuj_A Septum site-determining 34.6 29 0.00099 27.2 3.2 35 669-703 19-56 (57)
153 1fuu_A Yeast initiation factor 34.6 8.2 0.00028 40.2 -0.0 24 226-251 52-75 (394)
154 2p5t_B PEZT; postsegregational 34.2 11 0.00038 37.6 0.9 17 235-251 33-49 (253)
155 2ehv_A Hypothetical protein PH 34.1 11 0.00038 36.6 0.8 18 235-252 31-48 (251)
156 3b85_A Phosphate starvation-in 33.5 13 0.00046 36.3 1.3 25 225-251 15-39 (208)
157 2fwr_A DNA repair protein RAD2 33.4 13 0.00044 40.3 1.3 22 228-251 104-125 (472)
158 1um8_A ATP-dependent CLP prote 33.1 11 0.00038 39.8 0.7 18 234-251 72-89 (376)
159 3upu_A ATP-dependent DNA helic 32.8 14 0.00048 40.4 1.4 35 212-251 28-62 (459)
160 3lw7_A Adenylate kinase relate 32.7 12 0.0004 33.9 0.7 16 236-251 3-18 (179)
161 3opc_A Uncharacterized protein 32.7 1.9E+02 0.0067 26.4 9.2 38 648-694 20-58 (154)
162 4a74_A DNA repair and recombin 32.7 13 0.00046 35.5 1.2 30 222-251 10-42 (231)
163 3c8u_A Fructokinase; YP_612366 32.5 13 0.00046 35.6 1.1 17 235-251 23-39 (208)
164 1ojl_A Transcriptional regulat 32.4 14 0.00048 38.2 1.3 20 232-251 23-42 (304)
165 4ag6_A VIRB4 ATPase, type IV s 32.3 11 0.00037 40.2 0.5 20 233-252 34-53 (392)
166 2w0m_A SSO2452; RECA, SSPF, un 32.3 15 0.0005 35.1 1.4 30 223-252 9-41 (235)
167 3hws_A ATP-dependent CLP prote 32.1 12 0.0004 39.4 0.7 18 234-251 51-68 (363)
168 1rz3_A Hypothetical protein rb 31.9 14 0.00048 35.4 1.1 29 223-251 8-39 (201)
169 3tr0_A Guanylate kinase, GMP k 31.9 11 0.00037 35.7 0.3 16 236-251 9-24 (205)
170 2cvh_A DNA repair and recombin 31.9 16 0.00054 34.8 1.5 30 223-252 6-38 (220)
171 4gl2_A Interferon-induced heli 31.7 15 0.00053 41.8 1.7 25 225-251 15-39 (699)
172 1w36_D RECD, exodeoxyribonucle 31.3 11 0.00038 43.0 0.4 18 234-251 164-181 (608)
173 3sqw_A ATP-dependent RNA helic 31.0 17 0.00058 40.8 1.8 26 225-250 51-76 (579)
174 3nmd_A CGMP dependent protein 31.0 28 0.00096 28.9 2.6 43 664-711 14-56 (72)
175 1wp9_A ATP-dependent RNA helic 30.9 15 0.00053 38.7 1.4 23 226-251 18-40 (494)
176 1kgd_A CASK, peripheral plasma 30.6 12 0.00039 35.3 0.3 16 236-251 7-22 (180)
177 3tau_A Guanylate kinase, GMP k 30.5 12 0.0004 36.2 0.3 16 236-251 10-25 (208)
178 3a00_A Guanylate kinase, GMP k 30.3 12 0.00043 35.2 0.5 15 237-251 4-18 (186)
179 1lvg_A Guanylate kinase, GMP k 29.7 12 0.00042 35.9 0.3 16 236-251 6-21 (198)
180 3pxi_A Negative regulator of g 29.5 22 0.00077 41.4 2.5 31 222-252 189-219 (758)
181 3lfu_A DNA helicase II; SF1 he 28.9 20 0.00069 40.5 2.0 24 228-251 16-39 (647)
182 2gk6_A Regulator of nonsense t 28.9 17 0.00058 41.6 1.3 18 235-252 196-213 (624)
183 1e9r_A Conjugal transfer prote 28.5 12 0.00042 40.4 0.0 19 233-251 52-70 (437)
184 2qag_C Septin-7; cell cycle, c 28.2 13 0.00045 40.6 0.3 23 229-251 26-48 (418)
185 4b3f_X DNA-binding protein smu 27.9 14 0.00047 42.5 0.3 26 226-252 198-223 (646)
186 2ykg_A Probable ATP-dependent 27.9 22 0.00076 40.5 2.1 24 226-251 22-45 (696)
187 1ye8_A Protein THEP1, hypothet 27.8 14 0.00047 35.2 0.2 15 237-251 3-17 (178)
188 1zp6_A Hypothetical protein AT 27.6 13 0.00044 34.7 0.0 16 236-251 11-26 (191)
189 1ly1_A Polynucleotide kinase; 27.5 16 0.00055 33.5 0.7 16 236-251 4-19 (181)
190 3lnc_A Guanylate kinase, GMP k 27.0 19 0.00064 35.1 1.1 16 236-251 29-44 (231)
191 2r8r_A Sensor protein; KDPD, P 26.9 15 0.0005 37.1 0.3 19 234-252 6-24 (228)
192 3sr0_A Adenylate kinase; phosp 26.8 17 0.00057 35.6 0.7 29 237-265 3-37 (206)
193 3trf_A Shikimate kinase, SK; a 26.6 17 0.00058 33.8 0.7 16 236-251 7-22 (185)
194 1qhx_A CPT, protein (chloramph 26.4 17 0.00059 33.4 0.7 17 235-251 4-20 (178)
195 2dr3_A UPF0273 protein PH0284; 26.4 20 0.00068 34.7 1.2 29 223-251 9-40 (247)
196 3cf2_A TER ATPase, transitiona 26.3 24 0.00082 41.9 2.0 51 201-251 200-255 (806)
197 2j41_A Guanylate kinase; GMP, 26.0 16 0.00054 34.4 0.3 16 236-251 8-23 (207)
198 1rj9_A FTSY, signal recognitio 26.0 18 0.00061 37.7 0.8 17 235-251 103-119 (304)
199 3umf_A Adenylate kinase; rossm 26.0 18 0.00062 35.8 0.8 30 236-265 31-66 (217)
200 3efg_A Protein SLYX homolog; x 25.8 74 0.0025 26.6 4.4 37 672-708 26-62 (78)
201 2qnr_A Septin-2, protein NEDD5 25.8 13 0.00045 38.4 -0.3 24 228-251 12-35 (301)
202 3iij_A Coilin-interacting nucl 25.7 18 0.00063 33.5 0.7 17 235-251 12-28 (180)
203 3pxi_A Negative regulator of g 25.7 30 0.001 40.4 2.7 17 236-252 523-539 (758)
204 2bdt_A BH3686; alpha-beta prot 25.7 16 0.00055 34.2 0.3 16 236-251 4-19 (189)
205 3e70_C DPA, signal recognition 25.6 24 0.00081 37.2 1.6 17 235-251 130-146 (328)
206 3b9q_A Chloroplast SRP recepto 25.5 16 0.00056 37.9 0.3 17 236-252 102-118 (302)
207 1znw_A Guanylate kinase, GMP k 25.2 17 0.00057 35.0 0.3 16 236-251 22-37 (207)
208 2gza_A Type IV secretion syste 25.1 15 0.00052 39.0 0.0 16 236-251 177-192 (361)
209 2v6i_A RNA helicase; membrane, 25.1 26 0.00089 37.9 1.9 16 236-251 4-19 (431)
210 3opc_A Uncharacterized protein 24.8 1.4E+02 0.0047 27.5 6.6 38 628-667 21-59 (154)
211 1sxj_A Activator 1 95 kDa subu 24.7 22 0.00075 39.6 1.2 18 235-252 78-95 (516)
212 2dhr_A FTSH; AAA+ protein, hex 24.6 33 0.0011 38.4 2.6 16 236-251 66-81 (499)
213 2pt7_A CAG-ALFA; ATPase, prote 24.6 16 0.00055 38.4 0.1 16 236-251 173-188 (330)
214 4a4z_A Antiviral helicase SKI2 24.6 27 0.00091 42.5 2.0 23 226-250 48-70 (997)
215 3sop_A Neuronal-specific septi 24.5 15 0.00051 37.5 -0.2 18 234-251 2-19 (270)
216 2ce7_A Cell division protein F 24.3 31 0.0011 38.3 2.3 17 235-251 50-66 (476)
217 3plt_A Sphingolipid long chain 24.3 4.7E+02 0.016 26.3 10.6 75 628-705 23-97 (234)
218 3nbx_X ATPase RAVA; AAA+ ATPas 24.0 25 0.00084 39.4 1.4 26 225-252 34-59 (500)
219 1z6g_A Guanylate kinase; struc 24.0 18 0.00062 35.3 0.3 16 236-251 25-40 (218)
220 1qvr_A CLPB protein; coiled co 23.8 32 0.0011 40.9 2.4 17 235-251 589-605 (854)
221 2qen_A Walker-type ATPase; unk 23.6 23 0.00078 36.0 1.0 18 235-252 32-49 (350)
222 1r6b_X CLPA protein; AAA+, N-t 23.5 35 0.0012 39.7 2.7 18 235-252 489-506 (758)
223 1kag_A SKI, shikimate kinase I 23.4 22 0.00075 32.5 0.7 16 236-251 6-21 (173)
224 1odf_A YGR205W, hypothetical 3 23.3 26 0.0009 36.1 1.4 18 234-251 31-48 (290)
225 4a2q_A RIG-I, retinoic acid in 23.3 28 0.00095 40.8 1.8 24 226-251 257-280 (797)
226 2z83_A Helicase/nucleoside tri 23.2 28 0.00097 38.0 1.7 15 236-250 23-37 (459)
227 2i3b_A HCR-ntpase, human cance 23.2 19 0.00067 34.6 0.4 17 236-252 3-19 (189)
228 2ze6_A Isopentenyl transferase 23.1 21 0.00073 35.7 0.7 16 236-251 3-18 (253)
229 1ypw_A Transitional endoplasmi 23.1 18 0.00061 42.9 0.1 51 201-251 200-255 (806)
230 1kht_A Adenylate kinase; phosp 22.9 22 0.00076 32.8 0.7 16 236-251 5-20 (192)
231 3kta_A Chromosome segregation 22.9 19 0.00064 33.4 0.2 16 236-251 28-43 (182)
232 3e1s_A Exodeoxyribonuclease V, 22.7 26 0.00088 39.8 1.3 19 234-252 204-222 (574)
233 1m1j_A Fibrinogen alpha subuni 22.7 2.8E+02 0.0095 30.6 9.1 29 664-692 76-104 (491)
234 2oca_A DAR protein, ATP-depend 22.6 23 0.00077 38.8 0.8 22 228-251 124-145 (510)
235 1yks_A Genome polyprotein [con 22.6 29 0.001 37.7 1.7 20 230-251 6-25 (440)
236 3vaa_A Shikimate kinase, SK; s 22.5 23 0.00079 33.6 0.7 16 236-251 27-42 (199)
237 2d7d_A Uvrabc system protein B 22.3 47 0.0016 38.3 3.4 80 202-286 5-97 (661)
238 1oyw_A RECQ helicase, ATP-depe 22.2 17 0.00059 40.5 -0.3 25 225-251 33-57 (523)
239 3twe_A Alpha4H; unknown functi 22.1 74 0.0025 20.7 2.8 18 688-705 8-25 (27)
240 3uie_A Adenylyl-sulfate kinase 22.0 27 0.00093 33.2 1.1 19 233-251 24-42 (200)
241 2orw_A Thymidine kinase; TMTK, 22.0 19 0.00064 34.4 -0.0 17 236-252 5-21 (184)
242 2b8t_A Thymidine kinase; deoxy 21.9 16 0.00056 36.4 -0.5 18 235-252 13-30 (223)
243 2xzl_A ATP-dependent helicase 21.9 27 0.00091 41.4 1.2 18 235-252 376-393 (802)
244 2px0_A Flagellar biosynthesis 21.8 22 0.00074 36.8 0.4 18 235-252 106-123 (296)
245 1c4o_A DNA nucleotide excision 21.8 28 0.00096 40.2 1.4 70 208-282 7-89 (664)
246 4a2w_A RIG-I, retinoic acid in 21.7 29 0.001 41.7 1.6 24 226-251 257-280 (936)
247 1gm5_A RECG; helicase, replica 21.7 30 0.001 40.9 1.6 20 232-251 387-406 (780)
248 3kb2_A SPBC2 prophage-derived 21.6 24 0.00082 32.0 0.6 16 236-251 3-18 (173)
249 2wjy_A Regulator of nonsense t 21.4 29 0.00098 41.2 1.4 18 235-252 372-389 (800)
250 1uaa_A REP helicase, protein ( 21.2 26 0.0009 40.1 1.0 20 233-252 14-33 (673)
251 1knq_A Gluconate kinase; ALFA/ 21.2 22 0.00077 32.6 0.3 16 236-251 10-25 (175)
252 2og2_A Putative signal recogni 21.0 22 0.00077 38.0 0.3 17 236-252 159-175 (359)
253 2qor_A Guanylate kinase; phosp 20.5 27 0.00091 33.3 0.7 16 236-251 14-29 (204)
254 1tev_A UMP-CMP kinase; ploop, 20.3 27 0.00091 32.3 0.7 16 236-251 5-20 (196)
255 2fna_A Conserved hypothetical 20.2 27 0.00092 35.5 0.7 18 235-252 31-48 (357)
256 1gku_B Reverse gyrase, TOP-RG; 20.1 37 0.0013 41.5 2.0 22 226-249 65-86 (1054)
257 2yhs_A FTSY, cell division pro 20.1 32 0.0011 38.6 1.3 17 236-252 295-311 (503)
258 3swy_A Cyclic nucleotide-gated 20.0 2.4E+02 0.0083 21.2 5.7 35 671-705 2-36 (46)
No 1
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.4e-85 Score=709.47 Aligned_cols=338 Identities=36% Similarity=0.527 Sum_probs=280.5
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEcccccccccc-ccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLT-EYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t-~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
.++|+|+||+||++.+|...+...++.+.+...++++..++.....+ .....+.|.||+||+++++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 46999999999999999999999999998878889888776433322 23456889999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCCCcce
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLC 300 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~~~l~ 300 (716)
+.+|+|||+||||||||||||||||+| +.|+++.+||..+........|.|++||+|||||+|+|||++++.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~l~ 162 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLP 162 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEEEC
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcCce
Confidence 999999999999999999999999976 67889999999998766677899999999999999999999988999
Q ss_pred eEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEEe
Q 042351 301 MREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFID 380 (716)
Q Consensus 301 ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVD 380 (716)
+++|+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++..... .......|+|+|||
T Consensus 163 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~~skl~lVD 241 (350)
T 2vvg_A 163 LKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE-NKEVIRVGKLNLVD 241 (350)
T ss_dssp EEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-----CEEEEEEEEEEE
T ss_pred eeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccC-CCccEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998765432 22345689999999
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCHH
Q 042351 381 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCE 460 (716)
Q Consensus 381 LAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~e 460 (716)
||||||..+++.. +.+.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+..+++
T Consensus 242 LAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 320 (350)
T 2vvg_A 242 LAGSERQSKTGAT-GETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320 (350)
T ss_dssp CCCCCC----------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccccc-HHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 9999998887655 456679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcccCCCCC
Q 042351 461 HTINTLRYADRVKSLSKGNISKRDPLS 487 (716)
Q Consensus 461 eTlsTLrfA~R~k~I~~~~~~~~dp~~ 487 (716)
||++||+||+|+|+|+++|.++.+|..
T Consensus 321 ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 321 ETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp HHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred HHHHHHHHHHHHhhccccceecCCchh
Confidence 999999999999999999999988753
No 2
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=5.8e-85 Score=712.94 Aligned_cols=323 Identities=58% Similarity=0.851 Sum_probs=276.4
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
..++|+|+||+||++.+|...++.++|.+. +.+.+.+++++.+++.+.+.+.+.|.||+||+++++|++||+.+++|||
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv 127 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIP-SKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 127 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECC-BSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEEC-CCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHH
Confidence 368999999999999999999988898884 6778889999888888888888999999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC------------CCccchHHHHHHHhhh-ccccceeeEEEEEEEecCeeeecC
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP------------LPLKASHDILRLMHQM-HRSQGFQLYVSFFEIYGGKVFDLL 293 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G------------l~~~a~~~if~~i~~~-~~~~~~~V~vS~~EIYne~v~DLL 293 (716)
+.+|+|||+||||||||||||||||.| +.++++.+||..+... .....|.|+|||+|||||+|+|||
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL 207 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL 207 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECC
Confidence 999999999999999999999999987 4567888999988753 346789999999999999999999
Q ss_pred CCCCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeE
Q 042351 294 NDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLV 373 (716)
Q Consensus 294 ~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~ 373 (716)
+++..+.+++|++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|.|++. ....
T Consensus 208 ~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~~ 279 (387)
T 2heh_A 208 NKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK--------GRMH 279 (387)
T ss_dssp TTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS--------SSEE
T ss_pred CCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC--------Ceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999753 2467
Q ss_pred EEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhh-cCCCceEEEEEEe
Q 042351 374 GKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS-FVGDSRTVMISCI 452 (716)
Q Consensus 374 skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqds-LgGnskT~mIa~I 452 (716)
|+|+|||||||||..+++..++++++|++.||+||++|++||.||..++.|||||+||||+||||+ |||||+|+|||||
T Consensus 280 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~i 359 (387)
T 2heh_A 280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATI 359 (387)
T ss_dssp EEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEE
T ss_pred eEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEEe
Confidence 999999999999998887777788889999999999999999999999999999999999999999 5999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccC
Q 042351 453 SPSSGSCEHTINTLRYADRVKSLSKG 478 (716)
Q Consensus 453 SP~~~~~eeTlsTLrfA~R~k~I~~~ 478 (716)
||+..+++||++||+||+|||+|+..
T Consensus 360 sP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 360 SPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999753
No 3
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.3e-84 Score=714.27 Aligned_cols=325 Identities=58% Similarity=0.841 Sum_probs=276.7
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
..++|+||||+||++..|...++.++|.+. +.+.+.+++++.+++.+.+.+.+.|.||+||+++++|++||+.+++|||
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~-~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV 147 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVP-SKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 147 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECC-SSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEEC-CCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHH
Confidence 368999999999999999999999999884 6778889999888888888888999999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC------------CCccchHHHHHHHhhh-ccccceeeEEEEEEEecCeeeecC
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP------------LPLKASHDILRLMHQM-HRSQGFQLYVSFFEIYGGKVFDLL 293 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G------------l~~~a~~~if~~i~~~-~~~~~~~V~vS~~EIYne~v~DLL 293 (716)
+.+|+|||+||||||||||||||||+| +.++++.+||..+... .....|.|+|||+|||||+|+|||
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL 227 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL 227 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECC
Confidence 999999999999999999999999977 4567888999888752 346789999999999999999999
Q ss_pred CCCCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeE
Q 042351 294 NDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLV 373 (716)
Q Consensus 294 ~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~ 373 (716)
+++..+.+++|++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|.|.+. ....
T Consensus 228 ~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~~ 299 (410)
T 1v8k_A 228 NKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--------GRLH 299 (410)
T ss_dssp TTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS--------SSEE
T ss_pred CCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC--------Ccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999764 2367
Q ss_pred EEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhh-cCCCceEEEEEEe
Q 042351 374 GKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS-FVGDSRTVMISCI 452 (716)
Q Consensus 374 skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqds-LgGnskT~mIa~I 452 (716)
|+|+|||||||||..+++..++++++|++.||+||++|++||.||..++.|||||+||||+||||+ |||||+|+|||||
T Consensus 300 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~i 379 (410)
T 1v8k_A 300 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMI 379 (410)
T ss_dssp EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEE
T ss_pred eEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEEEEEe
Confidence 999999999999998887777777789999999999999999999999999999999999999999 5999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccCCc
Q 042351 453 SPSSGSCEHTINTLRYADRVKSLSKGNI 480 (716)
Q Consensus 453 SP~~~~~eeTlsTLrfA~R~k~I~~~~~ 480 (716)
||+..+++|||+||+||+|||+|...|.
T Consensus 380 SP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 380 SPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999976653
No 4
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4.6e-84 Score=703.62 Aligned_cols=336 Identities=37% Similarity=0.553 Sum_probs=290.4
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhh
Q 042351 146 NNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPI 225 (716)
Q Consensus 146 ~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pL 225 (716)
...++|+|+||+||++..|...+...++.+++..+.+.+..++.. .....+.|.||+||+++++|++||+.+++||
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~----~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~pl 93 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGT----AHEMPKTFTFDAVYDWNAKQFELYDETFRPL 93 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCT----TTCCCEEEECSEEECTTCCHHHHHHHTHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCC----CCCCceEEEcCeEeCCcCchHHHHHHHHHHH
Confidence 456899999999999999999999999999888888998877532 1234678999999999999999999999999
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccCC---------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQP---------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR 296 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~G---------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~ 296 (716)
|+.+|+|||+||||||||||||||||+| ++|+++.+||..+.. .....|.|+|||+|||||+|+|||++.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~ 172 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSKD 172 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSSC
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEECCCCC
Confidence 9999999999999999999999999976 457889999998876 456789999999999999999999864
Q ss_pred --CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEE
Q 042351 297 --KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVG 374 (716)
Q Consensus 297 --~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~s 374 (716)
+.+.++++++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.....+.......|
T Consensus 173 ~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~s 252 (372)
T 3b6u_A 173 QTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVG 252 (372)
T ss_dssp TTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEE
T ss_pred CCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEE
Confidence 578999999999999999999999999999999999999999999999999999999999998865443434456789
Q ss_pred EEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC-CCCcCCCChhhHhhhhhcCCCceEEEEEEeC
Q 042351 375 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-GHIPFRGSKLTEVLRDSFVGDSRTVMISCIS 453 (716)
Q Consensus 375 kL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~-~hVPyRdSKLT~LLqdsLgGnskT~mIa~IS 453 (716)
+|+|||||||||..+++..+ .+.+|+..||+||++|++||.||.+++ .|||||+||||+||||+|||||+|+||+|||
T Consensus 253 kL~lVDLAGSEr~~~t~~~g-~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vs 331 (372)
T 3b6u_A 253 KLNLVDLAGSERQAKTGAQG-ERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVG 331 (372)
T ss_dssp EEEEEECCCCCE-----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEEC
T ss_pred EEEEEECCCCccccccCcch-hhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeC
Confidence 99999999999988877654 455699999999999999999998764 6999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccccCCcccCCCCC
Q 042351 454 PSSGSCEHTINTLRYADRVKSLSKGNISKRDPLS 487 (716)
Q Consensus 454 P~~~~~eeTlsTLrfA~R~k~I~~~~~~~~dp~~ 487 (716)
|+..+++||++||+||+|+|+|++.|.++.+|..
T Consensus 332 P~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~ 365 (372)
T 3b6u_A 332 PASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD 365 (372)
T ss_dssp CBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----
T ss_pred CcccCHHHHHHHHHHHHHHhhccccceecCChHH
Confidence 9999999999999999999999999999988743
No 5
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.5e-83 Score=697.32 Aligned_cols=327 Identities=36% Similarity=0.551 Sum_probs=263.0
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccc-ccc------------ccccccceEEEeceecCCCC
Q 042351 146 NNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKL-KVD------------LTEYVERHEFVFDAVLNEDV 212 (716)
Q Consensus 146 ~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~-~vd------------~t~~~~~~~F~FD~VFd~~a 212 (716)
...++|||+||+||++.+|...+...+|.+. +...+ +.+++. .+. .....+.+.|.||+||++++
T Consensus 7 d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~ 84 (355)
T 3lre_A 7 DLCHHMKVVVRVRPENTKEKAAGFHKVVHVV-DKHIL-VFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETS 84 (355)
T ss_dssp -----CEEEEEECCCCHHHHHTTCCBSEEEC-SSSEE-EEC------------------------CCEEEECSEEECTTC
T ss_pred hccCCCEEEEEeCcCChHHHhcCCceEEEec-CCceE-EecCCCCcceeecccccccccchhccCCCceEEeceEECCCC
Confidence 4568999999999999999999999999885 33433 333332 111 11233567899999999999
Q ss_pred CcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEec
Q 042351 213 TNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYG 286 (716)
Q Consensus 213 sQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYn 286 (716)
+|++||+.+++|+|+.+|+|||+||||||||||||||||+| +.++++.+||..+........|.|+|||+||||
T Consensus 85 ~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYn 164 (355)
T 3lre_A 85 TQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYN 164 (355)
T ss_dssp CHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEET
T ss_pred ChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEEC
Confidence 99999999999999999999999999999999999999976 567899999999988766778999999999999
Q ss_pred CeeeecCCCCCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCC
Q 042351 287 GKVFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD 366 (716)
Q Consensus 287 e~v~DLL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~ 366 (716)
|+|+|||++..++.+++|+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++......
T Consensus 165 E~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 244 (355)
T 3lre_A 165 EQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244 (355)
T ss_dssp TEEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC
T ss_pred CEEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765444
Q ss_pred CCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC---CCCcCCCChhhHhhhhhcCCC
Q 042351 367 SKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGD 443 (716)
Q Consensus 367 ~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~---~hVPyRdSKLT~LLqdsLgGn 443 (716)
.......|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||.+++ .|||||+||||+||||+||||
T Consensus 245 ~~~~~~~skl~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGn 323 (355)
T 3lre_A 245 INQNVRIAKMSLIDLAGSERASTSGAK-GTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGN 323 (355)
T ss_dssp TTCCCCCEEEEEEECCCCCC------------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTT
T ss_pred CCCCEEEEEEEEEECCCCCcCcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCC
Confidence 334456799999999999998877654 5566799999999999999999998643 599999999999999999999
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 042351 444 SRTVMISCISPSSGSCEHTINTLRYADRVKSL 475 (716)
Q Consensus 444 skT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I 475 (716)
|+|+||+||||+..+++||++||+||+|||+|
T Consensus 324 skt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 324 CQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999986
No 6
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=8.2e-84 Score=699.84 Aligned_cols=326 Identities=48% Similarity=0.781 Sum_probs=287.5
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhHHHH
Q 042351 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPLI 229 (716)
Q Consensus 150 ~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 229 (716)
+|||+||+||++..|...+..++|.+. ++.++.+.+++.+++.+.+.+.+.|.||+||+++++|++||+.+++|+|+++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~-~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 79 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVK-NNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDL 79 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEE-ETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEEC-CCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhh
Confidence 599999999999999999988999885 6678889888888887777778999999999999999999999999999999
Q ss_pred hc-CCCccEEEeCCCCCCCccccCC-----------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCCC
Q 042351 230 FH-RTKATCFAYGQTGSGKTYTMQP-----------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRK 297 (716)
Q Consensus 230 l~-G~N~tifAYGqTGSGKTyTm~G-----------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~~ 297 (716)
|+ ||||||||||||||||||||+| +.++++.+||..+........|.|+|||+|||||+|+|||++++
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 159 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK 159 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC--
T ss_pred ccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc
Confidence 96 9999999999999999999976 45688899999998766677899999999999999999999998
Q ss_pred cceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEE
Q 042351 298 KLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLS 377 (716)
Q Consensus 298 ~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~ 377 (716)
.+.++++++++++|.||+++.|.+++|++++|..|.++|++++|.||..|||||+||+|.|.+.. .....|+|+
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~------~~~~~skL~ 233 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN------KNTSLGKIA 233 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT------TTEEEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc------CCcceeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999998642 235679999
Q ss_pred EEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCC
Q 042351 378 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSG 457 (716)
Q Consensus 378 fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~ 457 (716)
|||||||||..+++..++++.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+..
T Consensus 234 lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~ 313 (360)
T 1ry6_A 234 FIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTIS 313 (360)
T ss_dssp EEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGG
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcc
Confidence 99999999999888877788889999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccCCccc
Q 042351 458 SCEHTINTLRYADRVKSLSKGNISK 482 (716)
Q Consensus 458 ~~eeTlsTLrfA~R~k~I~~~~~~~ 482 (716)
+++||++||+||+|+|+|++.++.+
T Consensus 314 ~~~ETlsTLrfA~rak~i~n~~~~~ 338 (360)
T 1ry6_A 314 CCEQTLNTLRYSSRVKNKGNSKLEG 338 (360)
T ss_dssp GHHHHHHHHHHHHHHCC--------
T ss_pred cHHHHHHHHHHHHHHhhcccCcccC
Confidence 9999999999999999999876544
No 7
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=7.9e-84 Score=700.44 Aligned_cols=332 Identities=36% Similarity=0.545 Sum_probs=279.4
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
....++|+|+||+||++..|...+...++.+++....+.+.... .......+.|.||+||+++++|++||+.+++|
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~----~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~p 79 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGG----LADKSSRKTYTFDMVFGASTKQIDVYRSVVCP 79 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEE----ETTEEEEEEEECSEEECTTCCHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCC----ccCCcCceEEeceEEEeccCchhHHHHHHHHH
Confidence 45568999999999999999999999999998877788775432 12233567899999999999999999999999
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccCC-----------------CCccchHHHHHHHhhhccccceeeEEEEEEEecC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQP-----------------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGG 287 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~G-----------------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne 287 (716)
||+.+|+|||+||||||||||||||||+| ++|+++.+||..+.. ....|.|+|||+|||||
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE 157 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNE 157 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETT
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCc
Confidence 99999999999999999999999999975 456677888877754 45679999999999999
Q ss_pred eeeecCCCC----CcceeEecC--CCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEe
Q 042351 288 KVFDLLNDR----KKLCMREDG--KQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRS 361 (716)
Q Consensus 288 ~v~DLL~~~----~~l~ired~--~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~ 361 (716)
+|+|||++. ..+.+++|+ +++++|.||+++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|...
T Consensus 158 ~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~ 237 (359)
T 1x88_A 158 ELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK 237 (359)
T ss_dssp EEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEE
T ss_pred eeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEe
Confidence 999999864 468899987 47899999999999999999999999999999999999999999999999999876
Q ss_pred eCCCCCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcC
Q 042351 362 ADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFV 441 (716)
Q Consensus 362 ~~~~~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLg 441 (716)
....+.......|+|+|||||||||..+++..+ .+.+|+..||+||++|++||.||..+..|||||+||||+||||+||
T Consensus 238 ~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g-~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLg 316 (359)
T 1x88_A 238 ETTIDGEELVKIGKLNLVDLAGSENIGRSGAVD-KRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLG 316 (359)
T ss_dssp EECTTSCEEEEEEEEEEEECCCCCC----------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSS
T ss_pred cccCCCCceEEEEEEEEEcCCCCCcccccCCcc-cchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhC
Confidence 433333334568999999999999988877654 4556999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcccC
Q 042351 442 GDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKR 483 (716)
Q Consensus 442 GnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~ 483 (716)
|||+|+||+||||+..+++||++||+||+|||+|+++|.+|+
T Consensus 317 Gnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 317 GRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp SSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred CCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999999998875
No 8
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2.3e-82 Score=687.76 Aligned_cols=328 Identities=34% Similarity=0.506 Sum_probs=295.7
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
..++|+|+||+||++..|...+...+|.+. +...+.+... ...+.|.||+||+++++|++||+.+++|+|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~~~~~---------~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 73 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQ-GPDTCTVDSK---------EAQGSFTFDRVFDMSCKQSDIFDFSIKPTV 73 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEEC-STTEEEECST---------TCCEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEc-CCCeEEEccC---------CCccEEeeCeEECCCCccHHHHHHHHHHHH
Confidence 357999999999999999998888899886 4444544321 235789999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC----------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP----------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR 296 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G----------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~ 296 (716)
+.+|+|||+||||||||||||||||+| +.|+++.+||..+........|.|+|||+|||||+|+|||++.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 153 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ 153 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTT
T ss_pred HHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCc
Confidence 999999999999999999999999976 4578899999998876667789999999999999999999875
Q ss_pred -CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEE
Q 042351 297 -KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGK 375 (716)
Q Consensus 297 -~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~sk 375 (716)
..+.+++|+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+..... .....|+
T Consensus 154 ~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~sk 230 (355)
T 1goj_A 154 NDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET---GSAKSGQ 230 (355)
T ss_dssp CCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT---TEEEEEE
T ss_pred cCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC---CceeeeE
Confidence 468999999999999999999999999999999999999999999999999999999999998865432 2456899
Q ss_pred EEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCC-CCCCcCCCChhhHhhhhhcCCCceEEEEEEeCC
Q 042351 376 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGDSRTVMISCISP 454 (716)
Q Consensus 376 L~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~-~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP 454 (716)
|+|||||||||..+++..+ .+.+|+..||+||++|++||.||..+ ..|||||+||||+||||+|||||+|+||+||||
T Consensus 231 L~lVDLAGSEr~~~t~~~g-~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP 309 (355)
T 1goj_A 231 LFLVDLAGSEKVGKTGASG-QTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSP 309 (355)
T ss_dssp EEEEECCCCSCCTTSSSCC-CCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECC
T ss_pred EEEEECCCCCcccccccch-hhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECc
Confidence 9999999999988876554 56669999999999999999999875 589999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCCcccCCCCCc
Q 042351 455 SSGSCEHTINTLRYADRVKSLSKGNISKRDPLSS 488 (716)
Q Consensus 455 ~~~~~eeTlsTLrfA~R~k~I~~~~~~~~dp~~~ 488 (716)
+..+++||++||+||+|+|+|++.+.++.++...
T Consensus 310 ~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 310 SSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp BGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred ccccHHHHHHHHHHHHHHhhccCCceeCCCCCHH
Confidence 9999999999999999999999999999877544
No 9
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-82 Score=693.15 Aligned_cols=334 Identities=30% Similarity=0.452 Sum_probs=249.8
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
....++|+|+||+||++..|...+...+|... +...+.+..++ ...+.+.|.||+||+++++|++||+.+++|
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~i~~~~------~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~p 89 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGM-DSCSLEIANWR------NHQETLKYQFDAFYGERSTQQDIYAGSVQP 89 (388)
T ss_dssp SSCCCCCEEEEEECCCC------------------------------------CEEEEECSEEECTTCCHHHHHHHHTGG
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEec-CCCeEEEecCC------CCCCeeEEEcceEecCCCCHhHHHHHHHHH
Confidence 35668999999999999999877666666543 34445444322 223457899999999999999999999999
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhh---ccccceeeEEEEEEEecCeeeecCCC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQM---HRSQGFQLYVSFFEIYGGKVFDLLND 295 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~---~~~~~~~V~vS~~EIYne~v~DLL~~ 295 (716)
||+.+|+|||+||||||||||||||||+| ++|+++.+||..+... ...+.|.|+|||+|||||+|+|||++
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 169 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDP 169 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSC
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhcc
Confidence 99999999999999999999999999975 6789999999998763 23467999999999999999999987
Q ss_pred C-CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEE
Q 042351 296 R-KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVG 374 (716)
Q Consensus 296 ~-~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~s 374 (716)
. ..+.+++|+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|.|.+...... .....|
T Consensus 170 ~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~--~~~~~s 247 (388)
T 3bfn_A 170 ASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP--FRQREG 247 (388)
T ss_dssp SSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTT--CCEEEE
T ss_pred CCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC--CceeEE
Confidence 5 4789999999999999999999999999999999999999999999999999999999999988654322 235689
Q ss_pred EEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCC
Q 042351 375 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISP 454 (716)
Q Consensus 375 kL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP 454 (716)
+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||
T Consensus 248 kL~lVDLAGSEr~~~t~~~-g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP 326 (388)
T 3bfn_A 248 KLYLIDLAGSEDNRRTGNK-GLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAP 326 (388)
T ss_dssp EEEEEECCCTTC---------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECC
T ss_pred EEEEEECCCCcccccccCc-cchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECC
Confidence 9999999999998887655 456679999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCCcccCCCCCc
Q 042351 455 SSGSCEHTINTLRYADRVKSLSKGNISKRDPLSS 488 (716)
Q Consensus 455 ~~~~~eeTlsTLrfA~R~k~I~~~~~~~~dp~~~ 488 (716)
+..+++||++||+||+|+|+|+++|.++.++...
T Consensus 327 ~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~ 360 (388)
T 3bfn_A 327 ERRFYLDTVSALNFAARSKEVINRPFTNESLQPH 360 (388)
T ss_dssp SGGGHHHHHHHHHHHCSEEEEC------------
T ss_pred ccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHH
Confidence 9999999999999999999999999999887554
No 10
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=2.9e-82 Score=679.83 Aligned_cols=311 Identities=35% Similarity=0.543 Sum_probs=285.8
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
..++|+|+||+||+++.|...+...++.+. +.+++.+. .+.|.||+||+++++|++||+.+++|+|
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~-~~~~~~~~-------------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv 70 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQ-GEDTVVIA-------------SKPYAFDRVFQSSTSQEQVYNDCAKKIV 70 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEE-TTTEEEET-------------TEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEEC-CCCeEEEC-------------CEEEECCeEeCCCCCHHHHHHHHhhhhH
Confidence 457999999999999999998888888875 45555542 3579999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC---------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCC-C
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP---------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLND-R 296 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G---------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~-~ 296 (716)
+.+++|||+||||||||||||||||+| +.|+++.+||..+........|.|+|||+|||||+|+|||++ +
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 150 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK 150 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTC
T ss_pred HHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCC
Confidence 999999999999999999999999985 567899999999988777788999999999999999999986 4
Q ss_pred CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEE
Q 042351 297 KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKL 376 (716)
Q Consensus 297 ~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL 376 (716)
..+.+++|++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++..... .....|+|
T Consensus 151 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skl 227 (325)
T 1bg2_A 151 TNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT---EQKLSGKL 227 (325)
T ss_dssp CSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT---CCEEEEEE
T ss_pred CCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC---CcEEEEEE
Confidence 578999999999999999999999999999999999999999999999999999999999998865432 24578999
Q ss_pred EEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCC
Q 042351 377 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSS 456 (716)
Q Consensus 377 ~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~ 456 (716)
+|||||||||..+++..+ .+.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+.
T Consensus 228 ~lVDLAGSEr~~~t~~~g-~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~ 306 (325)
T 1bg2_A 228 YLVDLAGSEKVSKTGAEG-AVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSS 306 (325)
T ss_dssp EEEECCCSCCCCCCSSSC-TTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBG
T ss_pred EEEECCCCCcccccCCcc-ccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCcc
Confidence 999999999988877654 5566999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 042351 457 GSCEHTINTLRYADRVKSL 475 (716)
Q Consensus 457 ~~~eeTlsTLrfA~R~k~I 475 (716)
.+++||++||+||+|||+|
T Consensus 307 ~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 307 YNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp GGHHHHHHHHHHHHTSCCC
T ss_pred ccHHHHHHHHHHHHHhccC
Confidence 9999999999999999986
No 11
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-82 Score=691.23 Aligned_cols=332 Identities=32% Similarity=0.510 Sum_probs=277.5
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
....++|+|+||+||++..|...+...+|.+. ....+.+..+. .....+.|.||+||+++++|++||+.+++|
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~~~~~~------~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~p 91 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVV-GPREVVTRHTL------DSKLTKKFTFDRSFGPESKQCDVYSVVVSP 91 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEE-TTTEEEESSSS------SSTTCEEEECSEEECTTCCHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEc-CCCeEEEecCC------CCCCceEEeccEEeccccchhHHHHHHHHH
Confidence 34567999999999999999988888888886 44556554332 112357899999999999999999999999
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccCC-----------------CCccchHHHHHHHhhhccccceeeEEEEEEEecC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQP-----------------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGG 287 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~G-----------------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne 287 (716)
||+.+|+|||+||||||||||||||||+| ++|+++.+||..+... ...|.|+|||+|||||
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE 169 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNE 169 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETT
T ss_pred HHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCC
Confidence 99999999999999999999999999976 3467888999888653 4689999999999999
Q ss_pred eeeecCCCC--CcceeEecC--CCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeC
Q 042351 288 KVFDLLNDR--KKLCMREDG--KQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSAD 363 (716)
Q Consensus 288 ~v~DLL~~~--~~l~ired~--~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~ 363 (716)
+|+|||++. ..+.+++|. +++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|.|.....
T Consensus 170 ~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 249 (373)
T 2wbe_C 170 ELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIREN 249 (373)
T ss_dssp EEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTT
T ss_pred eEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecC
Confidence 999999864 457788874 5789999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCC
Q 042351 364 GSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGD 443 (716)
Q Consensus 364 ~~~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGn 443 (716)
+.........|+|+|||||||||..+++...+.+.+|+..||+||++|++||.||..+..|||||+||||+||||+||||
T Consensus 250 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGn 329 (373)
T 2wbe_C 250 GIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGR 329 (373)
T ss_dssp CTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSS
T ss_pred CCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCC
Confidence 43333445689999999999999988877656777899999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcccCCC
Q 042351 444 SRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRDP 485 (716)
Q Consensus 444 skT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~dp 485 (716)
|+|+||+||||+..+++||++||+||+|+|+|+++|.+|++.
T Consensus 330 skt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 330 TKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 999999999999999999999999999999999999888653
No 12
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=3.6e-82 Score=688.08 Aligned_cols=325 Identities=34% Similarity=0.506 Sum_probs=281.6
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCC--CCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcch
Q 042351 146 NNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPH--SNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVE 223 (716)
Q Consensus 146 ~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~--~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~ 223 (716)
+..++|+|+||+||++..|...+...++.+.+. ...+.+ ..+.|.||+||+++++|++||+.+++
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~-------------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~ 74 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-------------AGKVYLFDKVFKPNASQEKVYNEAAK 74 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE-------------TTEEEECSEEECTTCCHHHHHHHHTH
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE-------------CCEEEeCceEecCCCCHHHHHHHhhh
Confidence 456799999999999999998888888877543 333332 24679999999999999999999999
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccccCC---------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCC
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTMQP---------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLN 294 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm~G---------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~ 294 (716)
|||+.+|+|||+||||||||||||||||.| ++|+++.+||..+........|.|+|||+|||||+|+|||+
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 154 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLD 154 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeeccc
Confidence 999999999999999999999999999975 56788999999998766678899999999999999999998
Q ss_pred CC-CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeE
Q 042351 295 DR-KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLV 373 (716)
Q Consensus 295 ~~-~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~ 373 (716)
+. ..+.+++|+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+..... .....
T Consensus 155 ~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~ 231 (365)
T 2y65_A 155 VSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN---QKKLS 231 (365)
T ss_dssp TTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT---CCEEE
T ss_pred CCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC---CCEeE
Confidence 64 578999999999999999999999999999999999999999999999999999999999998865432 24578
Q ss_pred EEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCC-CCCCcCCCChhhHhhhhhcCCCceEEEEEEe
Q 042351 374 GKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGDSRTVMISCI 452 (716)
Q Consensus 374 skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~-~~hVPyRdSKLT~LLqdsLgGnskT~mIa~I 452 (716)
|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..+ ..|||||+||||+||||+|||||+|+||+||
T Consensus 232 skL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~i 310 (365)
T 2y65_A 232 GKLYLVDLAGSEKVSKTGAE-GTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICC 310 (365)
T ss_dssp EEEEEEECCCCCC-----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEE
T ss_pred EEEEEEECCCCCcchhcCCc-chhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEe
Confidence 99999999999998887654 456679999999999999999999876 5899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccCCcccCCCCC
Q 042351 453 SPSSGSCEHTINTLRYADRVKSLSKGNISKRDPLS 487 (716)
Q Consensus 453 SP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~dp~~ 487 (716)
||+..+++||++||+||+|||+|++.+.++.++..
T Consensus 311 sP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~ 345 (365)
T 2y65_A 311 SPASFNESETKSTLDFGRRAKTVKNVVCVNEELTA 345 (365)
T ss_dssp CCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCS
T ss_pred cCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCH
Confidence 99999999999999999999999999999887644
No 13
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=6e-82 Score=683.04 Aligned_cols=325 Identities=34% Similarity=0.519 Sum_probs=281.1
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
..++|+|+||+||++..|...++..++.+..+.+.+...+ ..+.|.||+||+++++|++||+.+++|+|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~-----------~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv 70 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD-----------GSKSFNFDRVFHGNETTKNVYEEIAAPII 70 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT-----------SSCEEECSCEECTTSCHHHHHHHTTHHHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC-----------CCeEEECCEEECCCCCHHHHHHHHHHHHH
Confidence 3589999999999999998777766665544444443211 24689999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC---C
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR---K 297 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~---~ 297 (716)
+.+|+|||+||||||||||||||||+| +.++++.+||..+... ....|.|+|||+|||||+|+|||++. +
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 149 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQKMK 149 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGC-TTEEEEEEEEEEEEETTEEEESSSSSCTTC
T ss_pred HHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhC-cCCcEEEEEEEEEEeCCEEEEccCCCCCCC
Confidence 999999999999999999999999985 6788999999988763 45689999999999999999999764 5
Q ss_pred cceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCC--CCCceeEEE
Q 042351 298 KLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD--SKPARLVGK 375 (716)
Q Consensus 298 ~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~--~~~~~~~sk 375 (716)
.+.+++|++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|.|++...... .......|+
T Consensus 150 ~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~sk 229 (349)
T 1t5c_A 150 PLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSH 229 (349)
T ss_dssp CEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEE
T ss_pred CceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEE
Confidence 789999999999999999999999999999999999999999999999999999999999987654322 123456899
Q ss_pred EEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC--CCCcCCCChhhHhhhhhcCCCceEEEEEEeC
Q 042351 376 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVLRDSFVGDSRTVMISCIS 453 (716)
Q Consensus 376 L~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~--~hVPyRdSKLT~LLqdsLgGnskT~mIa~IS 453 (716)
|+|||||||||..+++..+ .+.+|+..||+||++|++||.||..++ .|||||+||||+||||+|||||+|+||||||
T Consensus 230 L~lVDLAGSEr~~~t~~~g-~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~is 308 (349)
T 1t5c_A 230 LNLVDLAGSERAAQTGAAG-VRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTIT 308 (349)
T ss_dssp EEEEECCCGGGTC--------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEEC
T ss_pred EEEEECCCCccccccCCcc-ccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeC
Confidence 9999999999988876554 555699999999999999999998765 6999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccccCCcccCCCC
Q 042351 454 PSSGSCEHTINTLRYADRVKSLSKGNISKRDPL 486 (716)
Q Consensus 454 P~~~~~eeTlsTLrfA~R~k~I~~~~~~~~dp~ 486 (716)
|+ +++||++||+||+|||+|++.|.++.++.
T Consensus 309 P~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~ 339 (349)
T 1t5c_A 309 PV--SFDETLTALQFASTAKYMKNTPYVNEVST 339 (349)
T ss_dssp TT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC-
T ss_pred CC--CHHHHHHHHHHHHHHhhcccCceeccCCC
Confidence 97 58999999999999999999999988764
No 14
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.3e-81 Score=698.60 Aligned_cols=340 Identities=32% Similarity=0.497 Sum_probs=280.0
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccc-------cccccccceEEEeceecCC-------
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKV-------DLTEYVERHEFVFDAVLNE------- 210 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~v-------d~t~~~~~~~F~FD~VFd~------- 210 (716)
....++|+|+|||||+++.|...+...++.+++....+++..+.... ......+.+.|.||+||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 45568999999999999999999998999998776777766543211 0112335689999999975
Q ss_pred CCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhh---ccccceeeEEEE
Q 042351 211 DVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQM---HRSQGFQLYVSF 281 (716)
Q Consensus 211 ~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~---~~~~~~~V~vS~ 281 (716)
.++|++||+.+++|||+.+|+|||+||||||||||||||||+| ++++++.+||..+... ..+..|.|+|||
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 4899999999999999999999999999999999999999975 6789999999999874 245789999999
Q ss_pred EEEecCeeeecCCCC------CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEE
Q 042351 282 FEIYGGKVFDLLNDR------KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQ 355 (716)
Q Consensus 282 ~EIYne~v~DLL~~~------~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~ 355 (716)
+|||||+|+|||++. ..+.|+||+.++++|.||+++.|.+++|++++|..|.++|++++|.||..|||||+||+
T Consensus 194 lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ift 273 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273 (443)
T ss_dssp EEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEE
T ss_pred EEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEE
Confidence 999999999999862 35899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCC-CCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC------------
Q 042351 356 LAIKRSADGS-DSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ------------ 422 (716)
Q Consensus 356 I~v~~~~~~~-~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~------------ 422 (716)
|.|++..... ........|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..++
T Consensus 274 i~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~-g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~ 352 (443)
T 2owm_A 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEAT-GQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKS 352 (443)
T ss_dssp EEEEEEC-------CCEEEEEEEEEECCCCCC---------------CCSSHHHHHHHHHHHHHCC--------------
T ss_pred EEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCc-cccccchhhhcHHHHHHHHHHHHHhccccccccccccccc
Confidence 9998754221 1223456899999999999998877654 4566799999999999999999997643
Q ss_pred ----------CCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcccC-CCCC
Q 042351 423 ----------GHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKR-DPLS 487 (716)
Q Consensus 423 ----------~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~-dp~~ 487 (716)
.|||||+||||+||||+|||||+|+||+||||+ +++||++||+||+|+|+|++.+.++. |+..
T Consensus 353 g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~~ 426 (443)
T 2owm_A 353 GRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVS 426 (443)
T ss_dssp -----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC----
T ss_pred ccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCcc
Confidence 389999999999999999999999999999997 59999999999999999999999987 6543
No 15
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3.6e-81 Score=680.68 Aligned_cols=325 Identities=33% Similarity=0.484 Sum_probs=289.0
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
..++|+|+||+||++..|...+...++.. .+...+.+... ....+.|.||+||+++++|++||+. ++|+|
T Consensus 3 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~--------~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv 72 (369)
T 3cob_A 3 MKGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWK--------DDKAKQHMYDRVFDGNATQDDVFED-TKYLV 72 (369)
T ss_dssp -CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECT--------TSCEEEEECSEEECTTCCHHHHHHT-TTHHH
T ss_pred CCCCeEEEEECCCCChhhccCCCcEEEEc-CCcEEEEecCC--------CCCceEEecCEEECCCCCcceehhh-hhhhh
Confidence 35799999999999999987776544333 22223322111 1234789999999999999999999 79999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC----
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR---- 296 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~---- 296 (716)
+.+++|||+||||||||||||||||+| +.|+++.+||..+........|.|++||+|||||+|+|||++.
T Consensus 73 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 152 (369)
T 3cob_A 73 QSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKR 152 (369)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCC
T ss_pred HhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCC
Confidence 999999999999999999999999975 6789999999999886666789999999999999999999763
Q ss_pred CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEE
Q 042351 297 KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKL 376 (716)
Q Consensus 297 ~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL 376 (716)
..+.+++|++++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .....|+|
T Consensus 153 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL 229 (369)
T 3cob_A 153 LKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT---QAIARGKL 229 (369)
T ss_dssp CCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT---CCEEEEEE
T ss_pred cceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC---CcEEEEEE
Confidence 578999999999999999999999999999999999999999999999999999999999998875432 34578999
Q ss_pred EEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCC
Q 042351 377 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSS 456 (716)
Q Consensus 377 ~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~ 456 (716)
+|||||||||..+++..+ .+.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+|||||||+.
T Consensus 230 ~lVDLAGSEr~~~t~~~g-~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~ 308 (369)
T 3cob_A 230 SFVDLAGSERVKKSGSAG-NQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAE 308 (369)
T ss_dssp EEEECCCSSCCCCCSSCS-HHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBG
T ss_pred EEEeCCCCCcccccCccc-hhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCcc
Confidence 999999999988877654 5667999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccCCcccCCC
Q 042351 457 GSCEHTINTLRYADRVKSLSKGNISKRDP 485 (716)
Q Consensus 457 ~~~eeTlsTLrfA~R~k~I~~~~~~~~dp 485 (716)
.+++||++||+||+|+|+|+++|.++.++
T Consensus 309 ~~~~ETl~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 309 SNLDETHNSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp GGHHHHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred ccHHHHHHHHHHHHHHhhcccCCcccCCH
Confidence 99999999999999999999999988776
No 16
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.6e-81 Score=683.90 Aligned_cols=327 Identities=33% Similarity=0.519 Sum_probs=274.7
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCC--------CCcHHhhh
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNED--------VTNEEVYS 219 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~--------asQeeVy~ 219 (716)
.++|+|+||+||++..|...+...++.+. ++.+.+..++.. ....+.|.||+||+++ ++|++||+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~--~~~~~i~~~~~~-----~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~ 75 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMS--GSTTTIVNPKQP-----KETPKSFSFDYSYWSHTSPEDINYASQKQVYR 75 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEE--TTEEEECCTTCT-----TSCCEEEECSEEEECSSCTTSSSCCCHHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEEC--CCcEEEeccCCC-----CCCceEEecceEeecCccccccccCcHHHHHH
Confidence 36899999999999999988888888885 355556555422 1235789999999887 89999999
Q ss_pred hcchhhHHHHhcCCCccEEEeCCCCCCCccccCC--------CCccchHHHHHHHhhh-ccccceeeEEEEEEEecCeee
Q 042351 220 ETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP--------LPLKASHDILRLMHQM-HRSQGFQLYVSFFEIYGGKVF 290 (716)
Q Consensus 220 ~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G--------l~~~a~~~if~~i~~~-~~~~~~~V~vS~~EIYne~v~ 290 (716)
.+++|||+.+|+|||+||||||||||||||||+| ++++++.+||..+... .....|.|+|||+|||||+|+
T Consensus 76 ~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~ 155 (366)
T 2zfi_A 76 DIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVR 155 (366)
T ss_dssp HTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEE
Confidence 9999999999999999999999999999999975 5678899999999763 345689999999999999999
Q ss_pred ecCCCC--CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCC-C
Q 042351 291 DLLNDR--KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD-S 367 (716)
Q Consensus 291 DLL~~~--~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-~ 367 (716)
|||++. ..+.+++|+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|.|.+...... .
T Consensus 156 DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 235 (366)
T 2zfi_A 156 DLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235 (366)
T ss_dssp ETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTT
T ss_pred EccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCC
Confidence 999875 4689999999999999999999999999999999999999999999999999999999999987643322 1
Q ss_pred CCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhC------------CCCCCcCCCChhhHh
Q 042351 368 KPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN------------DQGHIPFRGSKLTEV 435 (716)
Q Consensus 368 ~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~------------~~~hVPyRdSKLT~L 435 (716)
......|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||.. +..|||||+||||+|
T Consensus 236 ~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~l 314 (366)
T 2zfi_A 236 ITTEKVSKISLVDLAGSERADSTGAK-GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWL 314 (366)
T ss_dssp CEEEEEEEEEEEECCCGGGC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHH
T ss_pred ccceeEeEEEEEeCCCCccccccCCC-ccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHH
Confidence 22346799999999999998877654 45667999999999999999999975 357999999999999
Q ss_pred hhhhcCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCccc
Q 042351 436 LRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISK 482 (716)
Q Consensus 436 LqdsLgGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~ 482 (716)
|||+|||||+|+||+||||+..+++||++||+||+|||+|++.+.+.
T Consensus 315 LqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~ 361 (366)
T 2zfi_A 315 LRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361 (366)
T ss_dssp TGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC---------
T ss_pred HHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 99999999999999999999999999999999999999999987654
No 17
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-80 Score=668.58 Aligned_cols=315 Identities=35% Similarity=0.543 Sum_probs=271.2
Q ss_pred CCCeEEEEEeCCCCchhhhcC-CCCeEEEeCCCCEE-EEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhh
Q 042351 148 VAKIKVVVRKRPLNKKEIAKK-EEDIITIQPHSNYL-TVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPI 225 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~-~~~~v~~~~~~~~v-~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pL 225 (716)
.++|+|+||+||+++.|.... ...++.+++..+.+ .+.. ..+.+.|.||+||+++++|++||+. +.|+
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~l 72 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH---------KGKPVSFELDKVFSPQASQQDVFQE-VQAL 72 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE---------TTEEEEEECSEEECTTCCHHHHHTT-THHH
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC---------CCCeeEEecCeEeCCCCCcHhHHHH-HHHH
Confidence 579999999999999986543 34567776544433 3221 1235789999999999999999998 6999
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCC--C
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDR--K 297 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~--~ 297 (716)
|+.+++|||+||||||||||||||||+| +.++++.+||..+........|.|+|||+|||||+|+|||++. .
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 152 (330)
T 2h58_A 73 VTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQE 152 (330)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCC
T ss_pred HHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccc
Confidence 9999999999999999999999999986 6789999999999876666789999999999999999999754 3
Q ss_pred cc--eeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEE
Q 042351 298 KL--CMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGK 375 (716)
Q Consensus 298 ~l--~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~sk 375 (716)
.+ .+++|++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++..... .....|+
T Consensus 153 ~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~sk 229 (330)
T 2h58_A 153 KLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST---GLRTTGK 229 (330)
T ss_dssp CCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT---TEEEEEE
T ss_pred cceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC---CcEEEEE
Confidence 34 445688999999999999999999999999999999999999999999999999999998864332 3457899
Q ss_pred EEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCC
Q 042351 376 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPS 455 (716)
Q Consensus 376 L~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~ 455 (716)
|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+
T Consensus 230 L~lVDLAGSEr~~~t~~~-g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~ 308 (330)
T 2h58_A 230 LNLVDLAGSERVGKSGAE-GSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPV 308 (330)
T ss_dssp EEEEECCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCB
T ss_pred EEEEeCCCCCcccccCCc-hhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCc
Confidence 999999999998887655 4566799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccc
Q 042351 456 SGSCEHTINTLRYADRVKSLS 476 (716)
Q Consensus 456 ~~~~eeTlsTLrfA~R~k~I~ 476 (716)
..+++||++||+||+|+|+|+
T Consensus 309 ~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 309 EKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp GGGHHHHHHHHHHHHHHC---
T ss_pred cccHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999985
No 18
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.2e-80 Score=672.68 Aligned_cols=314 Identities=38% Similarity=0.612 Sum_probs=264.8
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhh
Q 042351 146 NNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPI 225 (716)
Q Consensus 146 ~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pL 225 (716)
...++|+|+||+||++.+|...+...++.+.+....+.+. ..+.|.||+||+++++|++||+.+++|+
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~------------~~~~f~FD~Vf~~~~~Q~~vy~~~~~pl 75 (344)
T 4a14_A 8 AEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG------------RDRHFGFHVVLAEDAGQEAVYQACVQPL 75 (344)
T ss_dssp -CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET------------TTEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred ccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec------------ccceEEEEEEEecCcchhHHHHHHHHHH
Confidence 4467999999999999999998888999988777766653 2467999999999999999999999999
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccCC------------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecC
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQP------------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLL 293 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~G------------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL 293 (716)
|+.+|+|||+||||||||||||||||.| +.|+++.+||..+... ....|.|+|||+|||||+|+|||
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL 154 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLL 154 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHH
Confidence 9999999999999999999999999964 5678899999998763 45789999999999999999999
Q ss_pred CC---CCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCC-----
Q 042351 294 ND---RKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGS----- 365 (716)
Q Consensus 294 ~~---~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~----- 365 (716)
++ .+.+.+++|++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.....
T Consensus 155 ~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 234 (344)
T 4a14_A 155 EVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPR 234 (344)
T ss_dssp SSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC--------
T ss_pred HhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCC
Confidence 74 4579999999999999999999999999999999999999999999999999999999999998764221
Q ss_pred CCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCC---CCCCcCCCChhhHhhhhhcCC
Q 042351 366 DSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND---QGHIPFRGSKLTEVLRDSFVG 442 (716)
Q Consensus 366 ~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~---~~hVPyRdSKLT~LLqdsLgG 442 (716)
........|+|+|||||||||..+++..+ .+.+|+..||+||++|++||.||.+. ..|||||+||||+||||+|||
T Consensus 235 ~~~~~~~~skl~lVDLAGSEr~~~t~~~g-~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgG 313 (344)
T 4a14_A 235 PAPGQLLVSKFHFVDLAGSERVLKTGSTG-ERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGG 313 (344)
T ss_dssp ----CEEEEEEEEEECCCCCCC---------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSST
T ss_pred ccccceeeeeeeEEecccchhhcccCCch-hhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCC
Confidence 12234568999999999999988877654 55669999999999999999999764 469999999999999999999
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 042351 443 DSRTVMISCISPSSGSCEHTINTLRYADRVK 473 (716)
Q Consensus 443 nskT~mIa~ISP~~~~~eeTlsTLrfA~R~k 473 (716)
||+|+||+||||+..+++||++||+||+|||
T Consensus 314 nskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 314 NAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp TSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred CcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999999999999996
No 19
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.3e-80 Score=672.08 Aligned_cols=323 Identities=34% Similarity=0.537 Sum_probs=258.2
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEcccccccc-ccccccceEEEeceec--------CCCCCcHHhhh
Q 042351 149 AKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVD-LTEYVERHEFVFDAVL--------NEDVTNEEVYS 219 (716)
Q Consensus 149 ~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd-~t~~~~~~~F~FD~VF--------d~~asQeeVy~ 219 (716)
.+|+|+||+||++++|...+...++.++ ++.+.+..+..... .......+.|.||+|| ++.++|++||+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~--~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~ 78 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVD--ANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFK 78 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEE--TTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeC--CCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHH
Confidence 4899999999999999998888888885 45566655443221 1123346789999999 56689999999
Q ss_pred hcchhhHHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhh-hccccceeeEEEEEEEecCeeeec
Q 042351 220 ETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFDL 292 (716)
Q Consensus 220 ~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~-~~~~~~~~V~vS~~EIYne~v~DL 292 (716)
.++.|+|+.+|+|||+||||||||||||||||+| ++|+++.+||..+.. ......|.|+|||+|||||+|+||
T Consensus 79 ~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DL 158 (354)
T 3gbj_A 79 CLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDL 158 (354)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEET
T ss_pred HhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEc
Confidence 9999999999999999999999999999999975 678899999998875 344567999999999999999999
Q ss_pred CCCC---CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCC-CCCC
Q 042351 293 LNDR---KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADG-SDSK 368 (716)
Q Consensus 293 L~~~---~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~-~~~~ 368 (716)
|++. ..+.+++++.++++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|.+.... ....
T Consensus 159 L~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 238 (354)
T 3gbj_A 159 LDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGT 238 (354)
T ss_dssp TC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCE
T ss_pred cCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCC
Confidence 9863 57999999999999999999999999999999999999999999999999999999999999875322 2222
Q ss_pred CceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhC------CCCCCcCCCChhhHhhhhhcCC
Q 042351 369 PARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN------DQGHIPFRGSKLTEVLRDSFVG 442 (716)
Q Consensus 369 ~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~------~~~hVPyRdSKLT~LLqdsLgG 442 (716)
.....|+|+|||||||||..+++..+ .+.+|+..||+||++|++||.||.. +..|||||+||||+||||+|||
T Consensus 239 ~~~~~skL~lVDLAGSEr~~~t~~~g-~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgG 317 (354)
T 3gbj_A 239 SGEKVGKLSLVDLAGSERATKTGAAG-DRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGG 317 (354)
T ss_dssp EEEEEEEEEEEECCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHST
T ss_pred CCeeEEEEEEEECCCCCchhhcCCcc-ccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCC
Confidence 34567999999999999988877655 4556999999999999999999974 4579999999999999999999
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Q 042351 443 DSRTVMISCISPSSGSCEHTINTLRYADRVKS 474 (716)
Q Consensus 443 nskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~ 474 (716)
||+|+||+||||+..+++|||+|||||+||+.
T Consensus 318 nskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 318 NSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp TCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred CCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999985
No 20
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.8e-80 Score=674.13 Aligned_cols=327 Identities=29% Similarity=0.423 Sum_probs=249.1
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEe------CCCCEEEEcccccc-c---cccccccceEEEeceecCCCCCc
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQ------PHSNYLTVHETKLK-V---DLTEYVERHEFVFDAVLNEDVTN 214 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~------~~~~~v~v~~~k~~-v---d~t~~~~~~~F~FD~VFd~~asQ 214 (716)
....++|+|+||+||+++.|...+...++... .+...+.+..+... . ........+.|.||+||+++++|
T Consensus 18 ~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q 97 (376)
T 2rep_A 18 GSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQ 97 (376)
T ss_dssp -----CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCH
T ss_pred hccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccc
Confidence 45568999999999999999766433221110 13445555442111 0 01122345789999999999999
Q ss_pred HHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC----------CCccchHHHHHHHhhh-ccccceeeEEEEEE
Q 042351 215 EEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP----------LPLKASHDILRLMHQM-HRSQGFQLYVSFFE 283 (716)
Q Consensus 215 eeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G----------l~~~a~~~if~~i~~~-~~~~~~~V~vS~~E 283 (716)
++||+. +.|+|+.+|+|||+||||||||||||||||+| ++|+++.+||..+... ...+.|.|+|||+|
T Consensus 98 ~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E 176 (376)
T 2rep_A 98 DEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVE 176 (376)
T ss_dssp HHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE
T ss_pred hhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEE
Confidence 999998 56999999999999999999999999999976 5678899999998874 34578999999999
Q ss_pred EecCeeeecCCCC------CcceeEec--CCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEE
Q 042351 284 IYGGKVFDLLNDR------KKLCMRED--GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQ 355 (716)
Q Consensus 284 IYne~v~DLL~~~------~~l~ired--~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~ 355 (716)
||||+|+|||++. ..+.++++ +.++++|.||+++.|.+++|++++|..|.++|++++|.||..|||||+||+
T Consensus 177 IYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ift 256 (376)
T 2rep_A 177 IYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQ 256 (376)
T ss_dssp EETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEE
T ss_pred EECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEE
Confidence 9999999999863 36788988 678999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCCCCceeEEEEEEEeCCCCCCCCCCCCCc---hhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChh
Q 042351 356 LAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDND---KQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKL 432 (716)
Q Consensus 356 I~v~~~~~~~~~~~~~~~skL~fVDLAGSEr~~~t~~~~---~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKL 432 (716)
|.|.+..... .....|+|+|||||||||..+++..+ +.+.+|+..||+||++|++||.||.+++.|||||+|||
T Consensus 257 i~v~~~~~~~---~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkL 333 (376)
T 2rep_A 257 LQISGEHSSR---GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKL 333 (376)
T ss_dssp EEEEEEESSS---CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGGSHH
T ss_pred EEEEEEecCC---CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCCHH
Confidence 9998865433 24567999999999999988776544 26777999999999999999999999999999999999
Q ss_pred hHhhhhhcCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 042351 433 TEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSL 475 (716)
Q Consensus 433 T~LLqdsLgGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I 475 (716)
|+||||+|||||+|+||+||||+..+++|||+||+||+|++++
T Consensus 334 T~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 334 TYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999863
No 21
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=4.9e-79 Score=660.15 Aligned_cols=319 Identities=34% Similarity=0.504 Sum_probs=261.1
Q ss_pred CCCeEEEEEeCCCCc-hhhhcCCCCeEEEeCC-----CCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhc
Q 042351 148 VAKIKVVVRKRPLNK-KEIAKKEEDIITIQPH-----SNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSET 221 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~-~E~~~~~~~~v~~~~~-----~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~ 221 (716)
.++|+|+||+||+++ .| .....++.+... ...+.+..+. ...+.+.|.||+||+++++|++||+.
T Consensus 2 k~nIrV~vRvRP~~~~~e--~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~f~FD~Vf~~~~~Q~~Vy~~- 72 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLE--NSDTSLINVNEFDDNSGVQSMEVTKIQ------NTAQVHEFKFDKIFDQQDTNVDVFKE- 72 (347)
T ss_dssp -CEEEEEEEECCCCTTTC--CCTTEEEEECCCBTTTTBEEEEEEEGG------GTTCEEEEEESEEECTTCCHHHHHHH-
T ss_pred CCCeEEEEEeCCCCcccc--cCCCceEEEecccCCCCceEEEEecCC------CCcCceEEeeCEEECCCCCHHHHHHH-
Confidence 479999999999987 34 233445555321 1234443321 12245789999999999999999998
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC----CCCccchHHHHHHHhhh-ccccceeeEEEEEEEecCeeeecCCCC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ----PLPLKASHDILRLMHQM-HRSQGFQLYVSFFEIYGGKVFDLLNDR 296 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~----Gl~~~a~~~if~~i~~~-~~~~~~~V~vS~~EIYne~v~DLL~~~ 296 (716)
+.|+|+.+|+|||+||||||||||||||||+ |++|+++.+||..+... ...+.|.|+|||+|||||+|+|||++.
T Consensus 73 v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 152 (347)
T 1f9v_A 73 VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSD 152 (347)
T ss_dssp HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--
T ss_pred HHHHHHHhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCc
Confidence 6799999999999999999999999999996 68899999999999874 345789999999999999999999764
Q ss_pred C----------cceeEec-CCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCC
Q 042351 297 K----------KLCMRED-GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGS 365 (716)
Q Consensus 297 ~----------~l~ired-~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 365 (716)
. ++.++++ ..++++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 153 ~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 232 (347)
T 1f9v_A 153 NNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT 232 (347)
T ss_dssp -----------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--
T ss_pred cccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC
Confidence 3 3667776 4678999999999999999999999999999999999999999999999999998764322
Q ss_pred CCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC---CCCcCCCChhhHhhhhhcCC
Q 042351 366 DSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVG 442 (716)
Q Consensus 366 ~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~---~hVPyRdSKLT~LLqdsLgG 442 (716)
.....|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..++ .|||||+||||+||||+|||
T Consensus 233 ---~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgG 308 (347)
T 1f9v_A 233 ---GAHSYGTLNLVDLAGSERINVSQVV-GDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTG 308 (347)
T ss_dssp ---CCEEEEEEEEEECCCCCCCCGGGCC-HHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHST
T ss_pred ---CceeeeEEEEEECCCCccccccccc-hhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCC
Confidence 2456899999999999998777654 4666799999999999999999998766 89999999999999999999
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCC
Q 042351 443 DSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGN 479 (716)
Q Consensus 443 nskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~ 479 (716)
||+|+||+||||+..+++||++||+||+|+++|+.++
T Consensus 309 nskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 309 DSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp TCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred CccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999999999999998765
No 22
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=9.4e-79 Score=658.66 Aligned_cols=321 Identities=32% Similarity=0.477 Sum_probs=255.3
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCC---CCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPH---SNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~---~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
.++|||+||+||++..|...+...++..... ...+.+..+. .....+.|.||+||+++++|++||+. +.|
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~ 76 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNE------GRILSYNFQFDMIFEPSHTNKEIFEE-IRQ 76 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--------CEEEEEEESEEECTTCCHHHHHHH-HHH
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCC------CcccceeeecCEEECCCccHHHHHHH-HHH
Confidence 4799999999999999876544333322111 1234443221 12235789999999999999999998 679
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC----CCCccchHHHHHHHhhh-ccccceeeEEEEEEEecCeeeecCCCC---
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ----PLPLKASHDILRLMHQM-HRSQGFQLYVSFFEIYGGKVFDLLNDR--- 296 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~----Gl~~~a~~~if~~i~~~-~~~~~~~V~vS~~EIYne~v~DLL~~~--- 296 (716)
+|+.+++|||+||||||||||||||||+ |+.|+++.+||..+... ...+.|.|+|||+|||||+|+|||++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 156 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSH 156 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-----
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccc
Confidence 9999999999999999999999999995 67899999999998873 445789999999999999999999753
Q ss_pred ---------CcceeEecC-CCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCC
Q 042351 297 ---------KKLCMREDG-KQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSD 366 (716)
Q Consensus 297 ---------~~l~ired~-~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~ 366 (716)
..+.++++. +++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 157 ~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~- 235 (349)
T 3t0q_A 157 DNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT- 235 (349)
T ss_dssp ----------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT-
T ss_pred cccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC-
Confidence 356777765 467999999999999999999999999999999999999999999999999998875433
Q ss_pred CCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCC---CCCcCCCChhhHhhhhhcCCC
Q 042351 367 SKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGD 443 (716)
Q Consensus 367 ~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~---~hVPyRdSKLT~LLqdsLgGn 443 (716)
.....|+|+|||||||||..+++..+ .+.+|+..||+||++|++||.||..++ .|||||+||||+||||+||||
T Consensus 236 --~~~~~~kL~lVDLAGSEr~~~t~~~g-~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGn 312 (349)
T 3t0q_A 236 --GETSQGKLNLVDLAGSERINSSAVTG-ERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGD 312 (349)
T ss_dssp --CCEEEEEEEEEECCCCCCCC----CC-HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTT
T ss_pred --CCeeEEEEEEEeCCCCCccccccCcc-ccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 24568999999999999988876654 566699999999999999999998765 499999999999999999999
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCC
Q 042351 444 SRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGN 479 (716)
Q Consensus 444 skT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~ 479 (716)
|+|+||+||||+..+++||++||+||+|+++|+.++
T Consensus 313 skt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 313 SKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp CEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999999997653
No 23
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-79 Score=661.97 Aligned_cols=320 Identities=29% Similarity=0.459 Sum_probs=257.4
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccc--cccccccceEEEeceecCCCCCcHHhhhhcch
Q 042351 146 NNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKV--DLTEYVERHEFVFDAVLNEDVTNEEVYSETVE 223 (716)
Q Consensus 146 ~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~v--d~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~ 223 (716)
...++||||||+||++..|. .++.+.++...+.++.++... ........+.|.||+||+ +++|++||+.+++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~ 94 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 94 (359)
T ss_dssp ---CCEEEEEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CCCCCEEEEEEcCCCCcccc-----cceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHH
Confidence 34579999999999976553 456666667777776654321 123344567899999997 5899999999999
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccccCC---------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCC
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTMQP---------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLN 294 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm~G---------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~ 294 (716)
|||+.+|+|||+||||||||||||||||+| +.|+++.+||+.+.. .....|.|+|||+|||||+|+|||+
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~-~~~~~~~v~vS~~EIYnE~i~DLL~ 173 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEE-RPTHAITVRVSYLEIYNESLFDLLS 173 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHT-CTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhc-CCCCcEEEEEEEEEEeccccccccc
Confidence 999999999999999999999999999975 567889999998875 4457899999999999999999997
Q ss_pred CC-------CcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCC
Q 042351 295 DR-------KKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDS 367 (716)
Q Consensus 295 ~~-------~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~ 367 (716)
+. ..+.+++++. +++|.|++++.|.+.+|++++|..|.++|.+++|.+|..|||||+||+|+|........
T Consensus 174 ~~~~~~~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~- 251 (359)
T 3nwn_A 174 TLPYVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS- 251 (359)
T ss_dssp SSTTSCTTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred cccccccccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccccc-
Confidence 52 3456777764 69999999999999999999999999999999999999999999999999977543322
Q ss_pred CCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhC-CCCCCcCCCChhhHhhhhhcCCCceE
Q 042351 368 KPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN-DQGHIPFRGSKLTEVLRDSFVGDSRT 446 (716)
Q Consensus 368 ~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~-~~~hVPyRdSKLT~LLqdsLgGnskT 446 (716)
......|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||.+ ++.|||||+||||+||||+|||||+|
T Consensus 252 ~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt 330 (359)
T 3nwn_A 252 EEKYITSKINLVDLAGSERLGKSGSE-GQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNM 330 (359)
T ss_dssp --CCEEEEEEEEECCCCC-----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEE
T ss_pred CcccccccceeeeccccccccccCCc-hhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccE
Confidence 22456799999999999998877654 45667999999999999999999986 45799999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 042351 447 VMISCISPSSGSCEHTINTLRYADRVKSL 475 (716)
Q Consensus 447 ~mIa~ISP~~~~~eeTlsTLrfA~R~k~I 475 (716)
+||+||||+..+++||++||+||+|||+|
T Consensus 331 ~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 331 VLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999986
No 24
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=5.8e-78 Score=664.00 Aligned_cols=325 Identities=28% Similarity=0.441 Sum_probs=263.4
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhh
Q 042351 146 NNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPI 225 (716)
Q Consensus 146 ~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pL 225 (716)
...++|+||||+||++..|..... .++.+ ++..++.+..+... .......+.|.||+||+++++|++||+. +.|+
T Consensus 56 ~l~gnIrV~vRvRP~~~~E~~~~~-~~~~~-~~~~~v~~~~~~~~--~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~pl 130 (412)
T 3u06_A 56 DLRDNIRVFCRIRPPLESEENRMC-CTWTY-HDESTVELQSIDAQ--AKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPL 130 (412)
T ss_dssp HHTCSEEEEEEECCCCGGGTTSCB-CEEEE-EETTEEEEECCC---------CCCEEECSEEECTTCCHHHHHTT-THHH
T ss_pred HhCCCEEEEEEcCCCCchhccCcc-eEEEe-cCCCEEEEecCCcc--cccccCceEEeeCeEcCCCCCHHHHHHH-HHHH
Confidence 446899999999999998865433 22333 35566666543211 1112235789999999999999999985 7899
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhh-ccccceeeEEEEEEEecCeeeecCCCCC-
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQM-HRSQGFQLYVSFFEIYGGKVFDLLNDRK- 297 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~-~~~~~~~V~vS~~EIYne~v~DLL~~~~- 297 (716)
|+.+|+|||+||||||||||||||||+| ++|+++.+||..+... ...+.|.|+|||+|||||+|+|||++..
T Consensus 131 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 210 (412)
T 3u06_A 131 IQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQK 210 (412)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCC
T ss_pred HHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCC
Confidence 9999999999999999999999999975 6789999999999873 3467899999999999999999997643
Q ss_pred c--ceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEE
Q 042351 298 K--LCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGK 375 (716)
Q Consensus 298 ~--l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~sk 375 (716)
. +.+.++++++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .....|+
T Consensus 211 ~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~~k 287 (412)
T 3u06_A 211 DMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK---QEISVGS 287 (412)
T ss_dssp CCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT---TEEEEEE
T ss_pred CceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC---CCEEEEE
Confidence 3 4555788899999999999999999999999999999999999999999999999999998765332 3457899
Q ss_pred EEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCC
Q 042351 376 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPS 455 (716)
Q Consensus 376 L~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~ 455 (716)
|+|||||||||... +.+..|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+
T Consensus 288 L~lVDLAGSEr~~~-----~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~ 362 (412)
T 3u06_A 288 INLVDLAGSESPKT-----STRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF 362 (412)
T ss_dssp EEEEECCCCCC---------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCB
T ss_pred EEEEECCCCCcCCc-----cchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCC
Confidence 99999999999642 2466799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccccCCcccC
Q 042351 456 SGSCEHTINTLRYADRVKSLSKGNISKR 483 (716)
Q Consensus 456 ~~~~eeTlsTLrfA~R~k~I~~~~~~~~ 483 (716)
..+++||++||+||+|+++++.++..+.
T Consensus 363 ~~~~~ETl~TLrfA~rv~~i~~~~~~~n 390 (412)
T 3u06_A 363 QDCFQESVKSLRFAASVNSCKMTKAKRN 390 (412)
T ss_dssp GGGHHHHHHHHHHHHHHHHHCC------
T ss_pred hhhHHHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999999999987765543
No 25
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=2.6e-78 Score=656.30 Aligned_cols=320 Identities=30% Similarity=0.466 Sum_probs=260.7
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEcccccccc--ccccccceEEEeceecCCCCCcHHhhhhcch
Q 042351 146 NNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVD--LTEYVERHEFVFDAVLNEDVTNEEVYSETVE 223 (716)
Q Consensus 146 ~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd--~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~ 223 (716)
+..++|||+||+||+.+. +..++.++++...+.++.++.... .......+.|.||+||+ +++|++||+.+++
T Consensus 20 ~~~g~IrV~vRvRP~~~~-----~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~ 93 (358)
T 2nr8_A 20 GTRKKVHAFVRVKPTDDF-----AHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 93 (358)
T ss_dssp ---CCEEEEEEECCCSSC-----CTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CCCCCeEEEEEcCCCCCC-----ccceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHH
Confidence 456899999999998653 346788887888888876653211 12223457899999995 7899999999999
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccccCC---------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCC
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTMQP---------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLN 294 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm~G---------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~ 294 (716)
|+|+.+|+|||+||||||||||||||||+| ++|+++.+||..+.. .....|.|+|||+|||||+|+|||+
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEE-RPTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHT-CTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhh-cCCceEEEEEEEEEEeCCeeeECcC
Confidence 999999999999999999999999999965 567889999999876 3456799999999999999999998
Q ss_pred C-------CCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCC
Q 042351 295 D-------RKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDS 367 (716)
Q Consensus 295 ~-------~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~ 367 (716)
+ ..++.+++++ .+++|.||+++.|.+.+|++++|..|.++|++++|.+|..|||||+||+|.|++......
T Consensus 173 ~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~- 250 (358)
T 2nr8_A 173 TLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS- 250 (358)
T ss_dssp SSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred CccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCC-
Confidence 5 3468899998 679999999999999999999999999999999999999999999999999987543222
Q ss_pred CCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCC-CCCCcCCCChhhHhhhhhcCCCceE
Q 042351 368 KPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGDSRT 446 (716)
Q Consensus 368 ~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~-~~hVPyRdSKLT~LLqdsLgGnskT 446 (716)
......|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||.++ ..|||||+||||+||||+|||||+|
T Consensus 251 ~~~~~~skL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt 329 (358)
T 2nr8_A 251 EEKYITSKINLVDLAGSERLGKSGSE-GQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNM 329 (358)
T ss_dssp --CCEEEEEEEEECCCCC-----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEE
T ss_pred CCCEEEEEEEEEECCCCCcccccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeE
Confidence 22346799999999999998877654 566779999999999999999999864 4799999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 042351 447 VMISCISPSSGSCEHTINTLRYADRVKSL 475 (716)
Q Consensus 447 ~mIa~ISP~~~~~eeTlsTLrfA~R~k~I 475 (716)
+||+||||+..+++||++||+||+|||.|
T Consensus 330 ~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 330 VLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2.5e-77 Score=645.38 Aligned_cols=305 Identities=29% Similarity=0.501 Sum_probs=242.4
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEeC--CCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcch
Q 042351 146 NNVAKIKVVVRKRPLNKKEIAKKEEDIITIQP--HSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVE 223 (716)
Q Consensus 146 ~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~--~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~ 223 (716)
...++|||+||+||++..| ..++..++.+.+ +...+.+ +.+.|.||+||+++++|++||+.+++
T Consensus 19 ~~~~~VrV~vRvRP~~~~e-~~~~~~~v~~~~~~~~~~~~~-------------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~ 84 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFL-GRREPSVVQFPPWSDGKSLIV-------------DQNEFHFDHAFPATISQDEMYQALIL 84 (344)
T ss_dssp CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEE-------------TTEEEECSEEECTTCCHHHHHHHHTH
T ss_pred CCCCCeEEEEECCCCCccc-ccCCceEEEecCCCCCceEEe-------------cCcEEEcceEECCCCCHHHHHHhhcc
Confidence 4567999999999999877 345566776643 1223322 24689999999999999999999999
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccccC------------CCCccchHHHHHHHhhhcc--ccceeeEEEEEEEecCee
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTMQ------------PLPLKASHDILRLMHQMHR--SQGFQLYVSFFEIYGGKV 289 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm~------------Gl~~~a~~~if~~i~~~~~--~~~~~V~vS~~EIYne~v 289 (716)
|||+.+|+|||+||||||||||||||||. |++|+++.+||..+..... ...|.|+|||+|||||+|
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i 164 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKP 164 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCE
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCee
Confidence 99999999999999999999999999996 5678899999999976433 346999999999999999
Q ss_pred eecCCCCCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCC
Q 042351 290 FDLLNDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKP 369 (716)
Q Consensus 290 ~DLL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~ 369 (716)
+|||++.....+... .+.|++++.|.+.+|++++|..|.++|++++|.+|..|||||+||+|+|++.
T Consensus 165 ~DLL~~~~~~~~~~~-----~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------- 231 (344)
T 3dc4_A 165 FDLLGSTPHMPMVAA-----RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-------- 231 (344)
T ss_dssp EETTSSCTTSBCCSS-----TTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS--------
T ss_pred EEccCCCCCCccccc-----cccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec--------
Confidence 999987654333222 2358999999999999999999999999999999999999999999999742
Q ss_pred ceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEE
Q 042351 370 ARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMI 449 (716)
Q Consensus 370 ~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mI 449 (716)
...|+|+|||||||||..+++.. +.+++|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||
T Consensus 232 -~~~skl~lVDLAGSEr~~~t~~~-g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI 309 (344)
T 3dc4_A 232 -THHSRMNIVDLAGSEGVRRTGHE-GVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFL 309 (344)
T ss_dssp -SCEEEEEEEECCCCCCC--------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEE
T ss_pred -CcEEEEEEEECCCCccccccccc-cchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEE
Confidence 24799999999999998877654 5667799999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhcccccCC
Q 042351 450 SCISPSSGSCEHTINTLRYADRVKSLSKGN 479 (716)
Q Consensus 450 a~ISP~~~~~eeTlsTLrfA~R~k~I~~~~ 479 (716)
+||||+..+++|||+||+||+||+.....+
T Consensus 310 a~isP~~~~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 310 ACISPHQCDLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999986544
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-77 Score=655.10 Aligned_cols=321 Identities=34% Similarity=0.504 Sum_probs=263.7
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeC---CCC--EEEEccccccccccccccceEEEeceecCCCCCcHHhhhhc
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQP---HSN--YLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSET 221 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~---~~~--~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~ 221 (716)
..++|+|||||||+...+.. ....++.+.. ... .+.+... ......+.|.||+||+++++|++||+.
T Consensus 57 lkgnIrV~vRvRP~~~~~e~-~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~F~FD~VF~~~~~Q~~Vf~~- 128 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLEN-SDTSLINVNEFDDNSGVQSMEVTKI------QNTAQVHEFKFDKIFDQQDTNVDVFKE- 128 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSC-SCCTTEEECCCBTTTTBEEEEEEEC------SSSCEEEEEEESEEECTTCCHHHHHHH-
T ss_pred cCCCeEEEEEeCCCCCcccc-cCCCeeEEeeccCCCCceEEEEecC------CCCcCceEEEcCEEECCCCchHHHHHH-
Confidence 45899999999999876322 2233444431 111 2222211 122345789999999999999999998
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC----CCCccchHHHHHHHhhh-ccccceeeEEEEEEEecCeeeecCCCC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ----PLPLKASHDILRLMHQM-HRSQGFQLYVSFFEIYGGKVFDLLNDR 296 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~----Gl~~~a~~~if~~i~~~-~~~~~~~V~vS~~EIYne~v~DLL~~~ 296 (716)
+.|+|+.+|+|||+||||||||||||||||+ |+.|+++.+||..+... ...+.|.|+|||+|||||+|+|||++.
T Consensus 129 v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 208 (403)
T 4etp_A 129 VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSD 208 (403)
T ss_dssp HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC-
T ss_pred HHHHHHHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCc
Confidence 6699999999999999999999999999995 67899999999999873 446789999999999999999999754
Q ss_pred C----------cceeEecC-CCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCC
Q 042351 297 K----------KLCMREDG-KQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGS 365 (716)
Q Consensus 297 ~----------~l~ired~-~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 365 (716)
. ++.+++++ .++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 209 ~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 288 (403)
T 4etp_A 209 NNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 288 (403)
T ss_dssp -------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT
T ss_pred cccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC
Confidence 2 46677765 567999999999999999999999999999999999999999999999999998875433
Q ss_pred CCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCC---CCcCCCChhhHhhhhhcCC
Q 042351 366 DSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG---HIPFRGSKLTEVLRDSFVG 442 (716)
Q Consensus 366 ~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~---hVPyRdSKLT~LLqdsLgG 442 (716)
.....|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.||..+.. |||||+||||+||||+|||
T Consensus 289 ---~~~~~~kL~lVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgG 364 (403)
T 4etp_A 289 ---GAHSYGTLNLVDLAGSERINVSQVV-GDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTG 364 (403)
T ss_dssp ---CCEEEEEEEEEECCCCCCCCCSSCC-HHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTST
T ss_pred ---CCeeEEEEEEEECCCCccccccCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCC
Confidence 2456799999999999998777655 45667999999999999999999987554 9999999999999999999
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCC
Q 042351 443 DSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGN 479 (716)
Q Consensus 443 nskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~ 479 (716)
||+|+||+||||+..+++||++||+||+|+++++.++
T Consensus 365 nskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 365 DSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp TCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred CceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999998765
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=5.5e-72 Score=657.83 Aligned_cols=320 Identities=30% Similarity=0.484 Sum_probs=249.5
Q ss_pred CCCCCeEEEEEeC----CCCchhhhcCCCCeEEEeC-------CCCEEEEccccccccccccccceEEEeceecCCCCCc
Q 042351 146 NNVAKIKVVVRKR----PLNKKEIAKKEEDIITIQP-------HSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTN 214 (716)
Q Consensus 146 ~~~~~IkV~vRvR----Pl~~~E~~~~~~~~v~~~~-------~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQ 214 (716)
.-.++++|||||| |....|...+. +++.+.+ ..+.+++..+ .....+.+.|.||+||+++++|
T Consensus 371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~f~fd~vf~~~~~q 444 (715)
T 4h1g_A 371 ALKGNIRVFCRIRNVSSSSSSSSSSSSE-DIIQYEAPQDINDESKQELVITRN-----INNNFSNLRFLFDKIFEREQSN 444 (715)
T ss_dssp SSSCSEEEEEEECCCC--------------BCEEECCC-------CEEEEEEE-----ETTEEEEEEEECSEEECSSCCH
T ss_pred HHHhcCeEEEEEeccccccccccccccc-cceeccCCCCCCCCCCCeEEEcCC-----CCCCCCCeEEEeceEeCCCCCH
Confidence 4558999999999 44444444333 3333322 2234444332 2334467899999999999999
Q ss_pred HHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC----CCCccchHHHHHHHhhh-ccccceeeEEEEEEEecCee
Q 042351 215 EEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ----PLPLKASHDILRLMHQM-HRSQGFQLYVSFFEIYGGKV 289 (716)
Q Consensus 215 eeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~----Gl~~~a~~~if~~i~~~-~~~~~~~V~vS~~EIYne~v 289 (716)
++||+. +.|+|+.+|+|||+||||||||||||||||. |++++++.+||+.+... .....|.|+|||+|||||+|
T Consensus 445 ~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i 523 (715)
T 4h1g_A 445 DLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAI 523 (715)
T ss_dssp HHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEE
T ss_pred HHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEE
Confidence 999986 6799999999999999999999999999997 58899999999999873 44568999999999999999
Q ss_pred eecCCCC----CcceeEec-CCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCC
Q 042351 290 FDLLNDR----KKLCMRED-GKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADG 364 (716)
Q Consensus 290 ~DLL~~~----~~l~ired-~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~ 364 (716)
+|||++. ..+.++++ ..++++|.||+++.|.+.+|++++|..|.++|++++|.+|..|||||+||+|+|++....
T Consensus 524 ~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~ 603 (715)
T 4h1g_A 524 VDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL 603 (715)
T ss_dssp EESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT
T ss_pred EECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC
Confidence 9999753 34666654 556699999999999999999999999999999999999999999999999999887543
Q ss_pred CCCCCceeEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHh-CCCCCCcCCCChhhHhhhhhcCCC
Q 042351 365 SDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALD-NDQGHIPFRGSKLTEVLRDSFVGD 443 (716)
Q Consensus 365 ~~~~~~~~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~-~~~~hVPyRdSKLT~LLqdsLgGn 443 (716)
. .....|+|+|||||||||..+++.. +.+.+|+..||+||++|++||.+|. .++.|||||+||||+||||+||||
T Consensus 604 ~---~~~~~~~l~lvDLAGsEr~~~~~~~-g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn 679 (715)
T 4h1g_A 604 T---KESSYGTLNLIDLAGSERLNNSRAE-GDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGN 679 (715)
T ss_dssp T---CCEEEEEEEEEECCCCCC----------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTT
T ss_pred C---CCEeEEEEEEEeCCCcccccccCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCC
Confidence 3 2457899999999999998877654 4667799999999999999999996 456899999999999999999999
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc
Q 042351 444 SRTVMISCISPSSGSCEHTINTLRYADRVKSLS 476 (716)
Q Consensus 444 skT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~ 476 (716)
|+|+|||||||+..+++||++||+||+|+|+|+
T Consensus 680 ~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 680 SKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred ceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.93 E-value=1.7e-27 Score=212.89 Aligned_cols=85 Identities=36% Similarity=0.539 Sum_probs=80.2
Q ss_pred HHHhHhHHHHHHHHHHHhCC-CCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCc
Q 042351 402 AEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNI 480 (716)
Q Consensus 402 ~~INkSL~aL~~vI~AL~~~-~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~ 480 (716)
..||+||++||+||.+|..+ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|.|++.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 46999999999999999876 68999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCC
Q 042351 481 SKRDPL 486 (716)
Q Consensus 481 ~~~dp~ 486 (716)
++.++.
T Consensus 82 ~n~~~~ 87 (100)
T 2kin_B 82 VNLELT 87 (100)
T ss_dssp CEEECC
T ss_pred eccCCC
Confidence 887653
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.90 E-value=6.7e-25 Score=201.99 Aligned_cols=81 Identities=37% Similarity=0.550 Sum_probs=76.9
Q ss_pred hHhHHHHHHHHHHHhCC-CCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCcccC
Q 042351 405 NKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKR 483 (716)
Q Consensus 405 NkSL~aL~~vI~AL~~~-~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~~~ 483 (716)
|+||++||+||.||..+ ..|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|.|++.+.++.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999876 47999999999999999999999999999999999999999999999999999999988876
Q ss_pred CC
Q 042351 484 DP 485 (716)
Q Consensus 484 dp 485 (716)
++
T Consensus 81 ~~ 82 (117)
T 3kin_B 81 EL 82 (117)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.2e-24 Score=220.20 Aligned_cols=262 Identities=11% Similarity=0.126 Sum_probs=171.8
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcH--Hhhhhcchhh
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNE--EVYSETVEPI 225 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQe--eVy~~~v~pL 225 (716)
.|+||||||+||..-. ....|.. ....+.+ .. ..+.|.||+||++.+.|+ +||++ +.++
T Consensus 23 KGnIRVFcrvrp~~~p-----~~~~v~y--~~~~I~v-~~----------~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~ 83 (298)
T 2o0a_A 23 KGTMRCYAYVMEQNLP-----ENLLFDY--ENGVITQ-GL----------SEHVYKFNRVIPHLKVSEDKFFTQE-YSVY 83 (298)
T ss_dssp HTCCEEEEEECGGGSC-----TTEEEET--TTTEEEE-TT----------TCCEEECSEEEETTTSCHHHHHHHT-THHH
T ss_pred hCceEEEEEeccccCC-----ccceeec--Cccceee-cC----------CCceEEeeeEECccccccHHHHHHH-HHHH
Confidence 4899999999995311 1112333 2233544 11 126899999999999999 99999 9999
Q ss_pred HHHHhc-CCCccEEEeCCCCCCCccccCCCCccchHHHHHHHhhhccccceeeEEEEEEEe-cCeeeecCCCC---Ccce
Q 042351 226 VPLIFH-RTKATCFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQGFQLYVSFFEIY-GGKVFDLLNDR---KKLC 300 (716)
Q Consensus 226 V~~vl~-G~N~tifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~~~~~~~~V~vS~~EIY-ne~v~DLL~~~---~~l~ 300 (716)
|+.+++ |||+||||||||||||| ++++..+|........ +.|.+.+||+||| ||.++|||... .++.
T Consensus 84 i~scLd~GyNvcIfSyGQTGsGKT-------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~e 155 (298)
T 2o0a_A 84 HDMCLNQKKNFNLISLSTTPHGSL-------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDS 155 (298)
T ss_dssp HHHHHHTTCCEEEEEECSSCCHHH-------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------
T ss_pred HHHHHhCCCceEEEEECCCCCCcc-------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcce
Confidence 999999 99999999999999999 6777777765543122 7899999999999 99999999632 2567
Q ss_pred eEecCCCcEEEeCcEEEEecC-HHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEE
Q 042351 301 MREDGKQQVCIVGLQEYRVSN-VDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFI 379 (716)
Q Consensus 301 ired~~~~v~v~gLte~~V~s-~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fV 379 (716)
|+.+.++...+.|++.+.|.+ .+|+..++..+... ..|. +.-.|+.+.+.......+.......--++|+
T Consensus 156 Ik~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~ 226 (298)
T 2o0a_A 156 IKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFI 226 (298)
T ss_dssp CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEE
T ss_pred EEecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccccccCCCCceEEEEE
Confidence 888888999999999999999 89988877222211 1111 2244555555432111111101112457888
Q ss_pred eCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCH
Q 042351 380 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSC 459 (716)
Q Consensus 380 DLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~ 459 (716)
.+.-. +. ...|. +++..+ -+-.|+++-+|+--|. ..+.++++++.-+.
T Consensus 227 e~~~~-----------~~----------~~~l~---~~~~~~----~~~~spi~~il~~ll~-~tks~~~~~l~~~~--- 274 (298)
T 2o0a_A 227 ELNNL-----------KS----------IEQFD---KSIFKK----ESCETPIALVLKKLIS-DTKSFFLLNLNDSK--- 274 (298)
T ss_dssp EECSH-----------HH----------HHHHH---HHHHTC-----CCCSHHHHHHHHHHH-HSBCEEEEEECCGG---
T ss_pred EeCCH-----------HH----------HHHHH---hhcccc----cccCCcHHHHHHHHHh-cCcceEEEEecCCC---
Confidence 76321 11 11121 233333 3456899999987774 56778999996433
Q ss_pred HHHHHHHHHHHHhcccccC
Q 042351 460 EHTINTLRYADRVKSLSKG 478 (716)
Q Consensus 460 eeTlsTLrfA~R~k~I~~~ 478 (716)
+.-.-|..+++++.+.+.
T Consensus 275 -~~~~lL~~s~~i~~~~~~ 292 (298)
T 2o0a_A 275 -NVNKLLTISEEVQTQLCK 292 (298)
T ss_dssp -GHHHHHHHHHHHHHHTC-
T ss_pred -chhHHHHHHHHhhcccCc
Confidence 233378899999888654
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.22 E-value=0.027 Score=53.61 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=34.9
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
++||.....+..|+++++. +..++..+--.....++-||++|+|||+.+.
T Consensus 7 ~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 5788766655567777765 5555554433334567889999999999874
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.60 E-value=0.1 Score=50.40 Aligned_cols=51 Identities=22% Similarity=0.152 Sum_probs=32.5
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCC-ccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTK-ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N-~tifAYGqTGSGKTyTm~ 252 (716)
.++||........+..+++. +..++...-.+.. ..++-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 35777765544456666664 4444443322222 678999999999999873
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.23 E-value=0.19 Score=52.73 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=31.2
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
++||.+......+..++.. +..++...-.+....++-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 4676654333344555552 4444444333335678999999999999985
No 35
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.49 E-value=4.8 Score=42.44 Aligned_cols=240 Identities=11% Similarity=0.143 Sum_probs=126.8
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCC-CcHHhhhhcchhhH
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDV-TNEEVYSETVEPIV 226 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~a-sQeeVy~~~v~pLV 226 (716)
.|.||+|+=+-.-. ..+-+.++-.+.+++ .. .+.+.|.|++|++... +..+++..-++..+
T Consensus 58 KG~IRcFAYi~~~~-------~p~~~~idY~~~~It--~~---------~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~ 119 (333)
T 4etp_B 58 KGTMRVYAYVMEQN-------LPENLLFDYENGVIT--QG---------LSEHVYKFNRVIPHLKVSEDCFFTQEYSVYH 119 (333)
T ss_dssp HTCCEEEEEECCSS-------CCSSCEEETTTTEEE--C-----------CCCEEECSEEEETTTCCHHHHHHHTTHHHH
T ss_pred cCcEEEEEEECccc-------CCccEEEecccceEe--ec---------CCcceEEEeeeechhhcchHHHHHHHHHHHH
Confidence 47889988776621 222355655566664 11 1357899999997765 34455555599999
Q ss_pred HHHh-cCCCccEEEeCCCCCCCccccCCCCccchHHHHHHHhhh---ccccceeeEEEEEEEecCe-eeecCCCCC----
Q 042351 227 PLIF-HRTKATCFAYGQTGSGKTYTMQPLPLKASHDILRLMHQM---HRSQGFQLYVSFFEIYGGK-VFDLLNDRK---- 297 (716)
Q Consensus 227 ~~vl-~G~N~tifAYGqTGSGKTyTm~Gl~~~a~~~if~~i~~~---~~~~~~~V~vS~~EIYne~-v~DLL~~~~---- 297 (716)
+-++ .+.|+.||..|..- -...-..++..+... + .++|.|.+-|+.+-.+. ..|||....
T Consensus 120 DmcL~~~~NfslIsis~~~----------w~~Lr~~lL~fi~~k~~~Y-~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~ 188 (333)
T 4etp_B 120 DMALNQKKNFNLISLSTTP----------HGSLRESLIKFLAEKDTIY-QKQYVITLQFVFLSDDEFSQDMLLDYSHNDK 188 (333)
T ss_dssp HHHHHTTCCEEEEEEESSC----------CCHHHHHHHHHHHSTTCHH-HHHEEEEEEEEECCSSSCCEESSCC------
T ss_pred HHHHccCCCeeEEEecCCC----------cHHHHHHHHHHHHhccccc-ccceEEEEEEEEEcCCCchhhhhccccccCC
Confidence 9999 79999999998651 011123344444332 1 25789999998887776 699997632
Q ss_pred -c--ceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEE
Q 042351 298 -K--LCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVG 374 (716)
Q Consensus 298 -~--l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~s 374 (716)
. +.+.++ -.--+-+.+.+.+..+.+.++.+ ..+. .......-.|+.+.+.......+.......-
T Consensus 189 ~~I~lkiee~----sI~ldS~~i~i~~~~~~l~~~~k-------l~~~-~~~~~~GI~IlKfqf~~~~~~~~~n~~~~~~ 256 (333)
T 4etp_B 189 DSIKLKFEKH----SISLDSKLVIIENGLEDLPLNFS-------ADEH-PNLPHSGMGIIKVQFFPRDSKSDGNNDPVPV 256 (333)
T ss_dssp ----CEEETT----EEECCSCCEEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC--------CCCE
T ss_pred CCceEEeecc----eEeecceEEEeccccccchhhhc-------cccC-CCCCCCCceEEEEEEEecCcccccccCCcce
Confidence 1 222221 11123334555554432222110 0000 0001123446666665543221111111234
Q ss_pred EEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCC
Q 042351 375 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISP 454 (716)
Q Consensus 375 kL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP 454 (716)
.++||.+-+.. .+..|.++|.- + -.-.|+++-+||--| -..+.++|.++.-
T Consensus 257 ~fYFiEi~~~~---------------------ti~~l~~~i~~---~----~~~~spi~~ilkkLl-~~TKS~flfnl~~ 307 (333)
T 4etp_B 257 DFYFIELNNLK---------------------SIEQFDKSIFK---K----ESAETPIALVLKKLI-SDTKSFFLLNLND 307 (333)
T ss_dssp EEEEEEECSHH---------------------HHHHHHSCC-----------CCCCHHHHHHHHHH-HHSBCEEEEEECC
T ss_pred eEEEEEecChh---------------------HHHHHHhhcCc---c----cccCCCHHHHHHHHH-hhCcceEEEEcCC
Confidence 78999875432 11222222221 1 134578888888766 4567899999975
Q ss_pred CCC
Q 042351 455 SSG 457 (716)
Q Consensus 455 ~~~ 457 (716)
...
T Consensus 308 ~~~ 310 (333)
T 4etp_B 308 SKN 310 (333)
T ss_dssp STT
T ss_pred cch
Confidence 444
No 36
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=80.64 E-value=0.53 Score=43.56 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=23.1
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+..++..+..+....++-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 4444555555666778999999999999874
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.54 E-value=0.6 Score=48.35 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=23.4
Q ss_pred HHhhhhcchhhHHHHhc--CC--CccEEEeCCCCCCCcccc
Q 042351 215 EEVYSETVEPIVPLIFH--RT--KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 215 eeVy~~~v~pLV~~vl~--G~--N~tifAYGqTGSGKTyTm 251 (716)
..+.+.++..++...+. |. ...|+-||++|+|||+..
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 34444445555554443 22 236888999999999976
No 38
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=76.96 E-value=0.59 Score=43.28 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=23.1
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+..++..+..+....++-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 3445555555667778999999999999874
No 39
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=75.99 E-value=0.81 Score=46.02 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=21.8
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.|+||.+.+.+..-..+.+ .+..+. .....|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 3788888764432222222 222222 23567889999999999876
No 40
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=73.91 E-value=1.2 Score=41.36 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=15.2
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
-.++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 356779999999999984
No 41
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.12 E-value=0.65 Score=48.33 Aligned_cols=45 Identities=18% Similarity=0.405 Sum_probs=28.9
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..|.|+.+++. +.+... +...++.+....|+-||++|+|||+...
T Consensus 19 ~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHHH
T ss_pred CCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHHH
Confidence 34788887764 333322 2333444444569999999999999763
No 42
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=71.66 E-value=0.97 Score=47.88 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=20.6
Q ss_pred HHhcCCCccEEEeCCCCCCCccccC
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+-.|...+++-||++|+|||.++.
T Consensus 39 ~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 39 SLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3345777899999999999999873
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=71.04 E-value=1.2 Score=46.12 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=29.9
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|+||.... ...+...+.. +..++..-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 478887653 2344555543 333333211 133578999999999999874
No 44
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=70.99 E-value=1.3 Score=42.75 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=27.0
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHh-cCCCccEEEeCCCCCCCccccC
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIF-HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl-~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+.||.++.. ..++.++.. +..+. .+....++-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-----LKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-----HHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-----HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 455555442 234444443 22333 3356678999999999999874
No 45
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=70.70 E-value=0.86 Score=45.73 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=30.8
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhH-HHHhc----CCCccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIV-PLIFH----RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV-~~vl~----G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+.|+.+.+.+...+.+.+. +..+- ...+. .....++-||++|+|||+.+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 46788888776555555432 22211 01111 224458999999999999873
No 46
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=69.96 E-value=1 Score=47.08 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=25.2
Q ss_pred CCcHHhhhhcchhhHHHHh-cCCCccEEEeCCCCCCCccccC
Q 042351 212 VTNEEVYSETVEPIVPLIF-HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 212 asQeeVy~~~v~pLV~~vl-~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..+++..+.+ ...+..++ .+....++-||++|+|||+.+.
T Consensus 22 ~gr~~~~~~l-~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 22 PHREAELRRL-AEVLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp TTCHHHHHHH-HHTTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 3445555442 22333333 3455689999999999999873
No 47
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=69.18 E-value=0.82 Score=46.29 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=29.7
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHh----cCCCccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIF----HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl----~G~N~tifAYGqTGSGKTyTm 251 (716)
.+.||.+.+.+..-+.+.+.+..++.. .++ -.....++-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 467888776544334443333222211 111 124456899999999999876
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.94 E-value=1.6 Score=41.19 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.3
Q ss_pred cCCCccEEEeCCCCCCCccccC
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+....++-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3444459999999999999873
No 49
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=68.63 E-value=1.8 Score=42.00 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=18.5
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
+..+++|.+ ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445667766 78899999999987
No 50
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=68.26 E-value=0.57 Score=46.83 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=15.0
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.++-||++|+|||+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999999874
No 51
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=67.80 E-value=1.9 Score=41.01 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=17.9
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
+..+++|.+ ++..++||||||.+
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHH
Confidence 445667765 67788999999987
No 52
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=67.59 E-value=2.3 Score=40.51 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=18.0
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
++.+++|.+ ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 445567755 678899999999754
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=66.28 E-value=1.1 Score=46.49 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=29.8
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHhc----CCCccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH----RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~----G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+.||.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 356777766544334444433333211 1111 234568999999999998763
No 54
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=65.99 E-value=2.3 Score=42.93 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=20.8
Q ss_pred hHHHHh---cCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIF---HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl---~G~N~tifAYGqTGSGKTyTm~ 252 (716)
++..+. ......++-||++|+|||+...
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHHHH
Confidence 444443 4456789999999999999763
No 55
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=65.97 E-value=2.1 Score=44.94 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=31.6
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCc--cEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKA--TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~--tifAYGqTGSGKTyTm~ 252 (716)
.+.||.+.+. +.+... +..++..+-.|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3567777653 344332 44556666666654 79999999999998873
No 56
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.49 E-value=2.4 Score=41.79 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=18.6
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
+..+++|.+ ++..++||||||.+
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 455677876 68889999999987
No 57
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.40 E-value=2.3 Score=44.07 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=20.7
Q ss_pred hhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 223 EPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 223 ~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..+...+..|....++-||++|+|||+++.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 334444445533448999999999999874
No 58
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=62.90 E-value=1.4 Score=46.74 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=28.9
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHH-H---hcCCCccEEEeCCCCCCCccccC
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPL-I---FHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~-v---l~G~N~tifAYGqTGSGKTyTm~ 252 (716)
..||.+.+.+..-+.+.+.+..|+... + +.+....|+-||++|+|||+.+.
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 467777654333333333322222111 1 23455679999999999998773
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=62.71 E-value=2 Score=47.15 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=28.5
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|+||.... ...+...+.. +..+... .|..-.++-||++|+|||+.+.
T Consensus 101 ~~tfd~fv~-g~~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 101 DYTFENFVV-GPGNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TCSGGGCCC-CTTTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCChhhcCC-CCchHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 478887542 2234444433 2233222 1213468999999999999984
No 60
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=62.61 E-value=2.5 Score=46.40 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=21.2
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
++..++..-...+.-.|+||||||.||.
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3444455556678899999999999984
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=62.01 E-value=1.7 Score=42.92 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=18.8
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 61 i~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 61 IIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445667766 688999999999873
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=61.70 E-value=2.9 Score=40.92 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=18.3
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 445667766 577889999999863
No 63
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=61.69 E-value=0.97 Score=45.97 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=15.0
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.++-||++|+|||+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCcChHHHHHH
Confidence 38999999999999874
No 64
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=61.66 E-value=4 Score=40.28 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=16.6
Q ss_pred CCccEEEeCCCCCCCccccC
Q 042351 233 TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~ 252 (716)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34568999999999999874
No 65
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=61.66 E-value=1.7 Score=44.18 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=30.2
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHhc---CCCccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH---RTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~---G~N~tifAYGqTGSGKTyTm 251 (716)
...||.+.+.+..-+.+.+.+..|+.. .++. .....++-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 356777776544334444333333221 1222 23567999999999999876
No 66
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=61.42 E-value=3.2 Score=45.61 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=31.7
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHHHHhcCCC--ccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTK--ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N--~tifAYGqTGSGKTyTm 251 (716)
.+.||.+.+ |+++.+. +..++..+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 356777764 5555544 4456666666654 36888999999999876
No 67
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.40 E-value=2.3 Score=44.44 Aligned_cols=42 Identities=26% Similarity=0.422 Sum_probs=25.7
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|+.+++ |+.+.+ .|-..+-.|.-..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3555553 444443 33333344543337889999999999884
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=61.02 E-value=2.4 Score=42.74 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=18.6
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
++..++.|.+ ++..++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 3445667766 68899999999986
No 69
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=60.66 E-value=3.6 Score=41.88 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCCccEEEeCCCCCCCcccc
Q 042351 232 RTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm 251 (716)
.....++-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34446999999999999976
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=60.63 E-value=4.1 Score=42.56 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=25.3
Q ss_pred CcHHhhhhcchhhHHHHhcCCC-c--cEEEeCCCCCCCccccC
Q 042351 213 TNEEVYSETVEPIVPLIFHRTK-A--TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 213 sQeeVy~~~v~pLV~~vl~G~N-~--tifAYGqTGSGKTyTm~ 252 (716)
.+++..+. +...+..++.|.. . +++-||++|+|||+++.
T Consensus 21 gr~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 21 HREQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62 (389)
T ss_dssp TCHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred ChHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence 34444444 3334555555543 4 68999999999999873
No 71
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.54 E-value=3 Score=45.99 Aligned_cols=52 Identities=21% Similarity=0.396 Sum_probs=32.2
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHH-HHhc--CC--CccEEEeCCCCCCCcccc
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH--RT--KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G~--N~tifAYGqTGSGKTyTm 251 (716)
..-+||.|-+-+.--+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||...
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 3456777766554444455444444432 3333 32 335999999999999876
No 72
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.16 E-value=2.7 Score=45.03 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.+..++.-....+.-.|+||||||.+|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4444555555588889999999999983
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=59.92 E-value=3.3 Score=39.99 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=18.4
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 445667766 677889999999864
No 74
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=59.70 E-value=4.2 Score=44.89 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 211 DVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 211 ~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
-..|+.+... ...|...+-.|.-..++-||++|+|||+..
T Consensus 28 ivGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 28 YIGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CCSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred hCCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 3456666643 355555555666678999999999999886
No 75
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.26 E-value=5.6 Score=43.88 Aligned_cols=52 Identities=25% Similarity=0.297 Sum_probs=36.1
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHH-HHhc--C--CCccEEEeCCCCCCCcccc
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH--R--TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G--~N~tifAYGqTGSGKTyTm 251 (716)
..-+||.|-+-+.--+++.+.++.|+.. ..|. | .--.|+-||+.|+|||.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 3457888877766566666666666653 4444 3 2346999999999999765
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=58.58 E-value=1.2 Score=45.68 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=26.7
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHH-HHhcCCC----ccEEEeCCCCCCCcccc
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVP-LIFHRTK----ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~G~N----~tifAYGqTGSGKTyTm 251 (716)
.+||.|-+.+.--+++.+.++.|+-. .++++++ ..++-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 46666655444444444444444432 3344332 23899999999999876
No 77
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=58.54 E-value=3.3 Score=40.26 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=18.1
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 51 i~~~~~~~~--~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGID--LIVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667766 477899999999863
No 78
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.49 E-value=2.4 Score=44.17 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=17.4
Q ss_pred CCCccEEEeCCCCCCCccccC
Q 042351 232 RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm~ 252 (716)
+....++-||++|+|||+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 445688999999999998873
No 79
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=58.21 E-value=3.5 Score=42.63 Aligned_cols=26 Identities=31% Similarity=0.545 Sum_probs=20.2
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..++.|..--+++.++||||||.+.
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45667774456899999999999873
No 80
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=57.63 E-value=3.7 Score=40.70 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=18.1
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667766 577789999999764
No 81
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=57.61 E-value=1.8 Score=41.22 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=17.4
Q ss_pred HHHhcCCCccEEEeCCCCCCCcccc
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+.+++|.+ ++..++||+|||.+.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34456654 677899999999976
No 82
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=57.01 E-value=2 Score=45.04 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=29.5
Q ss_pred EEeceecCCCCCcHHhhhhcchhhH-HHHhcCC---CccEEEeCCCCCCCccccC
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIV-PLIFHRT---KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV-~~vl~G~---N~tifAYGqTGSGKTyTm~ 252 (716)
..||.|.+.+..-+.+.+.+..|+- ..++.|. ...|+-||++|+|||+...
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 3667766544333333333333332 1344442 2468999999999998773
No 83
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=56.42 E-value=3.3 Score=40.92 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=18.7
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.++..+..|. .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3445555664 4678899999999765
No 84
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.13 E-value=4.5 Score=42.61 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=19.3
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 71 i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 71 ILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred hHHHhCCCC--EEEECCCCCcccHHH
Confidence 456677877 688999999999873
No 85
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.73 E-value=3.8 Score=45.26 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=33.0
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHhc--CC--CccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH--RT--KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G~--N~tifAYGqTGSGKTyTm 251 (716)
..+||.|-+-+..-+++-+.+.-|+.. ..|. |. --.|+-||+.|+|||.+.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 456787776554445555555555542 3443 32 346999999999999875
No 86
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=55.32 E-value=4.3 Score=39.73 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=17.6
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
+..+++|.| ++..++||||||.+
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 345667766 57788999999987
No 87
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=54.87 E-value=4.4 Score=40.44 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=18.0
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 445667765 577789999999874
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=54.70 E-value=3.9 Score=40.38 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=17.8
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 60 i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCcCHHHHHH
Confidence 445667876 566779999999873
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=54.38 E-value=4.2 Score=41.42 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=16.3
Q ss_pred CCccEEEeCCCCCCCccccC
Q 042351 233 TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~ 252 (716)
-...+.-.|+||||||+++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34567788999999999984
No 90
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=53.97 E-value=5.5 Score=41.22 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=27.8
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHh--cCCCccEEEeCCCCCCCcccc
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIF--HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl--~G~N~tifAYGqTGSGKTyTm 251 (716)
.|+.+. .++.+.+. +..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~ii----G~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYI----GQESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCC----SCHHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhC----ChHHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 355544 44555544 344444443 234567999999999999876
No 91
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.95 E-value=6.9 Score=39.99 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=26.7
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhc--CCCccEEEeCCCCCCCccccC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFH--RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~--G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|+.+.+ ++.+... +..++..+.. +....++-||++|+|||+...
T Consensus 10 ~~~~~ig----~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 10 TLDEYIG----QERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp STTTCCS----CHHHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHH
T ss_pred cHHHhhC----HHHHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHHH
Confidence 4555444 3444333 3333443332 345678999999999998763
No 92
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=53.86 E-value=5.8 Score=39.41 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.1
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...++-||++|+|||+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4468999999999998873
No 93
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=52.81 E-value=4.8 Score=42.14 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=25.2
Q ss_pred CcHHhhhhcchhhHHHHhcC-CCccEEEeCCCCCCCccccC
Q 042351 213 TNEEVYSETVEPIVPLIFHR-TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 213 sQeeVy~~~v~pLV~~vl~G-~N~tifAYGqTGSGKTyTm~ 252 (716)
.+++..+. +...+..++.| ....++-||++|+|||+++.
T Consensus 24 gr~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 24 FREDILRD-AAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp TCHHHHHH-HHHHHHHHHTTCCCCEEEEEECTTSSHHHHHH
T ss_pred ChHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 34444444 33344454444 34579999999999999773
No 94
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=52.25 E-value=4.6 Score=36.75 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=17.1
Q ss_pred CCCccEEEeCCCCCCCcccc
Q 042351 232 RTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm 251 (716)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45667999999999999876
No 95
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=51.56 E-value=3.1 Score=44.12 Aligned_cols=50 Identities=22% Similarity=0.486 Sum_probs=29.3
Q ss_pred EEeceecCCCCCcHHhhhhcchhhH-HHHhcCC---CccEEEeCCCCCCCcccc
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIV-PLIFHRT---KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV-~~vl~G~---N~tifAYGqTGSGKTyTm 251 (716)
..|+.|.+.+..-+.+.+.+..|+- ..++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 4677776654433444443333321 1233332 245889999999999876
No 96
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=51.25 E-value=3.3 Score=40.10 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.0
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
++.+++|.+ ++..++||||||.+.
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667765 577889999999873
No 97
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=51.17 E-value=5.5 Score=41.82 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=20.7
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345666775567889999999999873
No 98
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=51.04 E-value=2.6 Score=43.91 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=28.3
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHH-HHhcCC---CccEEEeCCCCCCCcccc
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVP-LIFHRT---KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~G~---N~tifAYGqTGSGKTyTm 251 (716)
..||.|.+.+..-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 46777766443333333333323221 222332 346999999999999976
No 99
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=50.92 E-value=5.4 Score=44.03 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=28.1
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.||.|.+. ++. +..++..+..+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr----~~~----i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGR----SKE----IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCC----HHH----HHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----HHH----HHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 46666554 332 3345555545666678999999999999874
No 100
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=50.90 E-value=5 Score=43.76 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=20.3
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
+..++.|.+..++..|+||||||..
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 123 LPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHcCCCCcEEEEcCCCCchhHH
Confidence 4556677667789999999999977
No 101
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=50.77 E-value=5 Score=38.07 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.5
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998773
No 102
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=49.98 E-value=5.3 Score=42.21 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=18.6
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 445667876 678899999999764
No 103
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=49.88 E-value=5.1 Score=40.48 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.3
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...++-||++|+|||++..
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578999999999999873
No 104
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=49.81 E-value=6 Score=41.10 Aligned_cols=26 Identities=35% Similarity=0.637 Sum_probs=19.8
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
++.++.|....++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 45566774456788999999999864
No 105
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=49.80 E-value=2.7 Score=45.04 Aligned_cols=53 Identities=19% Similarity=0.390 Sum_probs=30.1
Q ss_pred eEEEeceecCCCCCcHHhhhhcchhhHH-HHhc---CCCccEEEeCCCCCCCccccC
Q 042351 200 HEFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH---RTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 200 ~~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~---G~N~tifAYGqTGSGKTyTm~ 252 (716)
..+.||.+.+.+.--+.+...+..++.. .++. .....|+-||++|+|||+...
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHH
Confidence 3467888876543333333332222221 1111 234579999999999998763
No 106
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=48.30 E-value=4.2 Score=37.01 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=17.9
Q ss_pred CCCccEEEeCCCCCCCccccCCC
Q 042351 232 RTKATCFAYGQTGSGKTYTMQPL 254 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm~Gl 254 (716)
..+..|+-||++|+|||+....+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 34556888999999999887543
No 107
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=47.48 E-value=5.8 Score=40.30 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=23.1
Q ss_pred CcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 213 TNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 213 sQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.++++.+. +...+-.|....++-||+.|+|||++..
T Consensus 29 g~~~~~~~----l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 29 GQEHIVKR----LKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp SCHHHHHH----HHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHHHH----HHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 35555443 2223334544458999999999999874
No 108
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=47.37 E-value=5.6 Score=42.69 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=16.6
Q ss_pred CCccEEEeCCCCCCCccccC
Q 042351 233 TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~ 252 (716)
....+.-.|+||||||++|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44568889999999999984
No 109
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=47.06 E-value=6.4 Score=41.31 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=18.4
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 445667766 678899999999763
No 110
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=46.82 E-value=6.4 Score=39.93 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=18.0
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
++.+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 345566765 677889999999865
No 111
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=46.82 E-value=33 Score=28.45 Aligned_cols=30 Identities=30% Similarity=0.425 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 673 DIYICKLNALLSKKAAVIVQLQTRLAQFQR 702 (716)
Q Consensus 673 D~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~ 702 (716)
|.=|..|+..|++|-+.|..||..|..||.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666777777777777777777777753
No 112
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=46.66 E-value=5 Score=40.09 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHHHhcCC--CccEEEeCCCCCCCccccC
Q 042351 226 VPLIFHRT--KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 226 V~~vl~G~--N~tifAYGqTGSGKTyTm~ 252 (716)
+..++.|. .-+++-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 33455552 2469999999999998864
No 113
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=46.41 E-value=5.7 Score=39.55 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=16.8
Q ss_pred HHhcCCCccEEEeCCCCCCCcccc
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.++++.+ ++.+|+||+|||+..
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHH
Confidence 4455554 677889999999986
No 114
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=46.23 E-value=7.8 Score=43.00 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=19.9
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|..-.++..++||||||.+.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 34566775566788999999999873
No 115
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=45.75 E-value=7.7 Score=40.02 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=22.8
Q ss_pred hhHHHHhcCC---CccEEEeCCCCCCCccccC
Q 042351 224 PIVPLIFHRT---KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 224 pLV~~vl~G~---N~tifAYGqTGSGKTyTm~ 252 (716)
..+..+++|. .-||+-||+.|+|||+...
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3466777876 3479999999999998763
No 116
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=45.41 E-value=7.6 Score=42.47 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=20.1
Q ss_pred hhHHHHhcCCCccEEEeCCCCCCCccc
Q 042351 224 PIVPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 224 pLV~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
.++..+++|.+. ++..++||||||.+
T Consensus 10 ~~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 10 EVDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 345667788664 57789999999997
No 117
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=45.26 E-value=5.4 Score=40.36 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.3
Q ss_pred cCCCccEEEeCCCCCCCccccC
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|....++-||+.|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 3544458999999999999763
No 118
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=44.90 E-value=7.2 Score=41.13 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=18.1
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
++.+++|.+ ++..++||||||.+.
T Consensus 46 i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHccCCC--EEEEcCCCCHHHHHH
Confidence 345667776 577899999999754
No 119
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=44.43 E-value=12 Score=38.57 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=22.2
Q ss_pred cchhhHHHHhcCC-----CccEEEeCCCCCCCcccc
Q 042351 221 TVEPIVPLIFHRT-----KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 221 ~v~pLV~~vl~G~-----N~tifAYGqTGSGKTyTm 251 (716)
++..++..++.++ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4555666666553 245888999999999875
No 120
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=44.38 E-value=6.5 Score=44.21 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=16.2
Q ss_pred cCCCccEEEeCCCCCCCccccC
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|.+ +.-.|+||||||+||.
T Consensus 259 ~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHHH
Confidence 4554 6778999999999983
No 121
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.81 E-value=15 Score=40.61 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=31.5
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHhc--C--CCccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH--R--TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G--~N~tifAYGqTGSGKTyTm 251 (716)
.-+||.|=+-+.--+++.+.+.-|+.. ..|. | .--.|+-||+.|+|||...
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 456777765544444555544444432 3343 3 2357999999999999754
No 122
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.45 E-value=13 Score=40.55 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=33.9
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHhc--CC--CccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH--RT--KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G~--N~tifAYGqTGSGKTyTm 251 (716)
.-+||.|-+-+.--+++-+.+.-|+.. .+|. |. --.|+-||+.|+|||...
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 356777776655555666665556543 3444 32 346999999999999765
No 123
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=43.23 E-value=4.1 Score=44.68 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=28.3
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHhcC---CCccEEEeCCCCCCCccccC
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIFHR---TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~G---~N~tifAYGqTGSGKTyTm~ 252 (716)
...||.|.+.+..-+.+.+.+..|+-. .++.| ....|+-||++|+|||+...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 356777765432222222222222211 22333 23468999999999998873
No 124
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=42.04 E-value=5.2 Score=40.65 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=15.3
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
..++-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999876
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=41.43 E-value=11 Score=38.62 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.5
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888899999999874
No 126
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=41.43 E-value=6.6 Score=43.84 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=29.0
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHH-HHh----cCCCccEEEeCCCCCCCcccc
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVP-LIF----HRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~-~vl----~G~N~tifAYGqTGSGKTyTm 251 (716)
..|+.+.+.+..-+.+.+.+..++-. .++ ......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 46666665444344444443322111 111 234567999999999999876
No 127
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=41.08 E-value=7.6 Score=43.73 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=17.8
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
+++.+.+|..-+++ .++||||||.++.
T Consensus 190 ~~~~~~~~~~~~ll-~~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLI-TMATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEE-EECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEE-EecCCCChHHHHH
Confidence 33444446554444 4999999999963
No 128
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=40.71 E-value=6.2 Score=40.81 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.4
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..|+-||++|+|||+.+.
T Consensus 47 ~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEESCCCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 368889999999999874
No 129
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.32 E-value=31 Score=28.22 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 674 IYICKLNALLSKKAAVIVQLQTRLAQFQRHLN 705 (716)
Q Consensus 674 ~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~ 705 (716)
.=+..|+.-|..|-+.|.+|+..|.+|+.-|.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566777799999999999999999988765
No 130
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.94 E-value=9.6 Score=38.58 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=16.9
Q ss_pred cCCCccEEEeCCCCCCCccccC
Q 042351 231 HRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 231 ~G~N~tifAYGqTGSGKTyTm~ 252 (716)
.|.-..++-||+.|+|||+...
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4443348999999999998873
No 131
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=39.49 E-value=9.5 Score=39.69 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=18.2
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||+|||.+.
T Consensus 39 i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 39 IPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 445667765 677789999999864
No 132
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=39.45 E-value=9.5 Score=40.53 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=18.1
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.| ++..++||||||...
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 445567765 688999999999843
No 133
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.65 E-value=4.3 Score=45.18 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=32.4
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHhc--C--CCccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIFH--R--TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G--~N~tifAYGqTGSGKTyTm 251 (716)
..+||.|-+-+.--+++.+.+.-|+.. ..|. | .--.|+-||+.|+|||.+.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 467787766554445555544444433 3444 3 2446999999999999764
No 134
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=38.63 E-value=7.3 Score=41.05 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=19.7
Q ss_pred HHHhcC---CCccEEE--eCCCCCCCccccC
Q 042351 227 PLIFHR---TKATCFA--YGQTGSGKTYTMQ 252 (716)
Q Consensus 227 ~~vl~G---~N~tifA--YGqTGSGKTyTm~ 252 (716)
..+..| ....++- ||+.|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 444555 4557888 9999999999873
No 135
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=38.58 E-value=14 Score=42.16 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=19.5
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+|+.+++|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 3456677877 688899999999864
No 136
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=38.43 E-value=11 Score=41.92 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
.++.++.|.+--++..++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 34556656556789999999999986
No 137
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=37.95 E-value=9 Score=44.68 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=28.6
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G 253 (716)
.||.+++. ++. ++.+++.+.......++-||++|+|||+.+.+
T Consensus 184 ~~d~~iGr----~~~----i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 184 GIDPLIGR----EKE----LERAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp CSCCCCSC----HHH----HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCccCC----HHH----HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 56666553 333 33355555555666788999999999998753
No 138
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=37.95 E-value=13 Score=38.88 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.0
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
-.++-||++|+|||+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 347779999999999873
No 139
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=37.61 E-value=38 Score=31.95 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 042351 672 LDIYICKLNALLS 684 (716)
Q Consensus 672 iD~Yvt~L~~ILs 684 (716)
+.+|.......|.
T Consensus 105 L~~~~~~~~~~l~ 117 (152)
T 4fla_A 105 LVEYTQNQKDVLS 117 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 140
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=37.19 E-value=6.6 Score=39.72 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=15.7
Q ss_pred HHhcCCCccEEEeCCCCCCCcccc
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.++.+.++ +..++||+|||.+.
T Consensus 124 ~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 124 EGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHhcCCe--EEEcCCCCCcHHHH
Confidence 34455443 44999999999886
No 141
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.98 E-value=65 Score=34.68 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=35.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 042351 627 DDDLNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAA-----VIVQLQTRLAQFQ 701 (716)
Q Consensus 627 ~e~I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~-----~I~~Lq~rL~~F~ 701 (716)
...|+.|=++=+.+...|.. +-..+++=|++|.....-..|.|+=+.++..-|.+++. +..+|+ +|..+|
T Consensus 66 ~~rIe~L~~~L~~~s~s~~~----~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq 140 (390)
T 1deq_A 66 TSRINKLRDSLFNYQKNSKD----SNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 34555555544455555543 33333333444444444445555555555555554433 334455 555555
Q ss_pred HHHH
Q 042351 702 RHLN 705 (716)
Q Consensus 702 ~~L~ 705 (716)
.-|+
T Consensus 141 ~~l~ 144 (390)
T 1deq_A 141 KNVR 144 (390)
T ss_pred HHHH
Confidence 4443
No 142
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=36.89 E-value=12 Score=41.01 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=18.9
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+..++.|.+ ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455667766 677889999999874
No 143
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=36.85 E-value=16 Score=37.91 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=15.9
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...++-||+.|+|||+++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSEEEEESCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4468899999999999873
No 144
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.39 E-value=8.3 Score=36.13 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.4
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.+.-.|++|||||+.+.
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45678999999999884
No 145
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=36.29 E-value=12 Score=36.29 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=23.3
Q ss_pred chhhHHHHhcC---CCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHR---TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G---~N~tifAYGqTGSGKTyTm~ 252 (716)
.-+-++.++.| ....+.-+|++|+|||..+.
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 44567788865 24467789999999999874
No 146
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=35.89 E-value=14 Score=39.95 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=18.4
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..++.|.+ +++.++||||||.+.
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 445667866 688889999999863
No 147
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=35.49 E-value=2e+02 Score=27.61 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q 042351 652 MDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAAVIVQLQTRL----AQFQRHLNEY 707 (716)
Q Consensus 652 meivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq~rL----~~F~~~L~ee 707 (716)
|.-.++|+.-|...+.|| -.. + ...++.|.+||++| ..|+..|++|
T Consensus 94 l~akr~EL~aL~~a~~~D--eak----I----~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 94 LISKRYEYNALLTASSPD--TAK----I----NAVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHTSSSCC--HHH----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCC--HHH----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566766555555555 222 2 23344444444444 4566666666
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.38 E-value=9.3 Score=39.60 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=14.5
Q ss_pred EEEeCCCCCCCccccC
Q 042351 237 CFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 237 ifAYGqTGSGKTyTm~ 252 (716)
++-||+.|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999874
No 149
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.98 E-value=9.3 Score=45.43 Aligned_cols=43 Identities=26% Similarity=0.514 Sum_probs=28.7
Q ss_pred EeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCC
Q 042351 203 VFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP 253 (716)
Q Consensus 203 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~G 253 (716)
.||.|++. ++ .+..+++.+..+....++-||++|+|||+.+.+
T Consensus 168 ~ld~viGr----~~----~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGR----DE----EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSC----HH----HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCc----HH----HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 55665553 32 344455555566666788899999999998753
No 150
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=34.85 E-value=14 Score=40.43 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.3
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..++.|.+ ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445567766 577899999999873
No 151
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=34.70 E-value=12 Score=38.40 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=17.8
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|. ..++..++||||||.+.
T Consensus 37 i~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHHhCCC-CCEEEECCCCChHHHHH
Confidence 34455663 24677899999999874
No 152
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.64 E-value=29 Score=27.21 Aligned_cols=35 Identities=6% Similarity=0.227 Sum_probs=24.3
Q ss_pred CCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 669 GNQ---LDIYICKLNALLSKKAAVIVQLQTRLAQFQRH 703 (716)
Q Consensus 669 g~d---iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~ 703 (716)
||+ ||+|..++..-+..-.+-+.+|+.++...+.+
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555 78888888888887788888888888766544
No 153
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=34.55 E-value=8.2 Score=40.16 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=18.3
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667766 577899999999873
No 154
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=34.15 E-value=11 Score=37.58 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.2
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
..|+..|+.|||||+..
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999854
No 155
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=34.08 E-value=11 Score=36.62 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=14.5
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..+.-.|++|||||..+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 345668999999999874
No 156
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=33.46 E-value=13 Score=36.32 Aligned_cols=25 Identities=44% Similarity=0.562 Sum_probs=17.2
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+++.+-.|-- +.-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 3444544543 445899999999987
No 157
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=33.39 E-value=13 Score=40.29 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=16.7
Q ss_pred HHhcCCCccEEEeCCCCCCCcccc
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.++++.+ ++..++||+|||.+.
T Consensus 104 ~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 104 RWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHhcCC--EEEEeCCCCCHHHHH
Confidence 4455544 677899999999986
No 158
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=33.11 E-value=11 Score=39.78 Aligned_cols=18 Identities=44% Similarity=0.602 Sum_probs=15.9
Q ss_pred CccEEEeCCCCCCCcccc
Q 042351 234 KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm 251 (716)
...++-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999876
No 159
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=32.78 E-value=14 Score=40.45 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 212 VTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 212 asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
..|.+++..+ +..+..+ ...++..|..|||||+++
T Consensus 28 ~~Q~~av~~~----~~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 28 EGQKNAFNIV----MKAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp HHHHHHHHHH----HHHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHHH----HHHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 4566665543 2233333 348899999999999987
No 160
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=32.73 E-value=12 Score=33.87 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.5
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|..|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999865
No 161
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=32.70 E-value=1.9e+02 Score=26.37 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 648 VEETMDVVREEMNLLVE-ADQPGNQLDIYICKLNALLSKKAAVIVQLQ 694 (716)
Q Consensus 648 IeetmeivkEEm~LL~~-vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq 694 (716)
+++..+++.+|-.+|.. -| +..|..|..+|...|..|.
T Consensus 20 l~~L~~lL~~E~~~L~~~~d---------~~~L~~i~~~K~~ll~~L~ 58 (154)
T 3opc_A 20 VVEFLHALEAETEALMDRRA---------HESLQAAVQRKETLADDLA 58 (154)
T ss_dssp HHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHHHH
Confidence 34455555555555543 22 2245555555544444443
No 162
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=32.70 E-value=13 Score=35.51 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=21.7
Q ss_pred chhhHHHHhcC-C--CccEEEeCCCCCCCcccc
Q 042351 222 VEPIVPLIFHR-T--KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 222 v~pLV~~vl~G-~--N~tifAYGqTGSGKTyTm 251 (716)
.-+-++.++.| . ...+.-+|++|||||..+
T Consensus 10 G~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 10 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SCHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 34556777754 2 345777899999999887
No 163
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=32.47 E-value=13 Score=35.65 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=13.9
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
-.|.-.|++|||||+.+
T Consensus 23 ~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLS 39 (208)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35566799999999876
No 164
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=32.45 E-value=14 Score=38.16 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.3
Q ss_pred CCCccEEEeCCCCCCCcccc
Q 042351 232 RTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm 251 (716)
.....|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45778999999999999865
No 165
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=32.28 E-value=11 Score=40.20 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=16.1
Q ss_pred CCccEEEeCCCCCCCccccC
Q 042351 233 TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~ 252 (716)
.|.-++..|+||||||+++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHH
Confidence 34556788999999999884
No 166
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=32.25 E-value=15 Score=35.08 Aligned_cols=30 Identities=17% Similarity=0.032 Sum_probs=20.5
Q ss_pred hhhHHHHhc-CC--CccEEEeCCCCCCCccccC
Q 042351 223 EPIVPLIFH-RT--KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 223 ~pLV~~vl~-G~--N~tifAYGqTGSGKTyTm~ 252 (716)
-+-++.++. |. ...+.-+|++|+|||+.+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 344566665 32 2356668999999999873
No 167
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=32.10 E-value=12 Score=39.41 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=15.6
Q ss_pred CccEEEeCCCCCCCcccc
Q 042351 234 KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm 251 (716)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457889999999999876
No 168
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=31.88 E-value=14 Score=35.39 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=19.5
Q ss_pred hhhHHHHhc---CCCccEEEeCCCCCCCcccc
Q 042351 223 EPIVPLIFH---RTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 223 ~pLV~~vl~---G~N~tifAYGqTGSGKTyTm 251 (716)
..+++.+.. .....|...|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 344454443 22346777899999999876
No 169
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=31.88 E-value=11 Score=35.66 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.1
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.+.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3556799999999876
No 170
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=31.86 E-value=16 Score=34.78 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=22.4
Q ss_pred hhhHHHHhc-CC--CccEEEeCCCCCCCccccC
Q 042351 223 EPIVPLIFH-RT--KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 223 ~pLV~~vl~-G~--N~tifAYGqTGSGKTyTm~ 252 (716)
-+-++.++. |. ...+.-+|.+|+|||..+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 355777776 43 3467889999999998874
No 171
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=31.72 E-value=15 Score=41.84 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=19.0
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+|+.+++|.+ ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445666766 688899999999875
No 172
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=31.34 E-value=11 Score=43.04 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.6
Q ss_pred CccEEEeCCCCCCCcccc
Q 042351 234 KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm 251 (716)
+..++..|++|||||+|+
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 456889999999999986
No 173
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=31.01 E-value=17 Score=40.81 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=19.4
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
+|..++.|.+--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34556655555678899999999986
No 174
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.96 E-value=28 Score=28.85 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=31.1
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042351 664 EADQPGNQLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYNVLA 711 (716)
Q Consensus 664 ~vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE~ls 711 (716)
.++.+|. |..|...|.+|.+-|.....++.....+|.|-+.+.
T Consensus 14 ~~~~mgt-----i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 14 SIEGRGS-----LRDLQYALQEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp -----CH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 888899999998888888888888888888766553
No 175
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=30.94 E-value=15 Score=38.67 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=17.6
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..+++| .++..++||+|||.++
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHH
Confidence 4455666 5677899999999986
No 176
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=30.61 E-value=12 Score=35.31 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.4
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=30.51 E-value=12 Score=36.19 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.6
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4666899999999876
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=30.30 E-value=12 Score=35.21 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.8
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
+.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999887
No 179
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=29.67 E-value=12 Score=35.86 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.8
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999987
No 180
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.48 E-value=22 Score=41.42 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=22.8
Q ss_pred chhhHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 222 VEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 222 v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
++.++..+..+....++-||++|+|||....
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 3344555555666678999999999998864
No 181
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=28.90 E-value=20 Score=40.48 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.9
Q ss_pred HHhcCCCccEEEeCCCCCCCcccc
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.++.-.+..++..|..|||||+|+
T Consensus 16 ~av~~~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 16 EAVAAPRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp HHHTCCSSCEEEEECTTSCHHHHH
T ss_pred HHHhCCCCCEEEEECCCCCHHHHH
Confidence 334444667889999999999998
No 182
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=28.88 E-value=17 Score=41.56 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=15.1
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++..|+.|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 456789999999999973
No 183
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=28.52 E-value=12 Score=40.35 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.4
Q ss_pred CCccEEEeCCCCCCCcccc
Q 042351 233 TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm 251 (716)
.+.-++.+|.||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3567899999999999987
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=28.22 E-value=13 Score=40.59 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.9
Q ss_pred HhcCCCccEEEeCCCCCCCcccc
Q 042351 229 IFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 229 vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+++|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999876
No 185
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=27.90 E-value=14 Score=42.47 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=17.9
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
|..++.... ..+-.|+.|||||+|+.
T Consensus 198 V~~al~~~~-~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQKE-LAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHCSS-EEEEECCTTSCHHHHHH
T ss_pred HHHHhcCCC-ceEEECCCCCCHHHHHH
Confidence 444443322 45677999999999974
No 186
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=27.87 E-value=22 Score=40.51 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.1
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..++.|.| ++..++||||||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 345567766 578889999999863
No 187
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=27.83 E-value=14 Score=35.23 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=12.8
Q ss_pred EEEeCCCCCCCcccc
Q 042351 237 CFAYGQTGSGKTYTM 251 (716)
Q Consensus 237 ifAYGqTGSGKTyTm 251 (716)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999987
No 188
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=27.60 E-value=13 Score=34.74 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.8
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|.-.|+.|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999876
No 189
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=27.48 E-value=16 Score=33.47 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.6
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|..|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5788999999999854
No 190
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=26.97 E-value=19 Score=35.11 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=9.2
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.+.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999887
No 191
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=26.90 E-value=15 Score=37.06 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=16.7
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 4568999999999999985
No 192
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=26.82 E-value=17 Score=35.64 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=23.1
Q ss_pred EEEeCCCCCCCcccc------CCCCccchHHHHHH
Q 042351 237 CFAYGQTGSGKTYTM------QPLPLKASHDILRL 265 (716)
Q Consensus 237 ifAYGqTGSGKTyTm------~Gl~~~a~~~if~~ 265 (716)
|+-.|+.||||++-- +|++.....+|++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~ 37 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILRE 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHH
Confidence 677899999998753 57777777888775
No 193
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=26.63 E-value=17 Score=33.75 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.8
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+..|.+|||||+..
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999865
No 194
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=26.43 E-value=17 Score=33.43 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.5
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
..|+-.|..|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999876
No 195
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=26.43 E-value=20 Score=34.65 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=20.9
Q ss_pred hhhHHHHhcC---CCccEEEeCCCCCCCcccc
Q 042351 223 EPIVPLIFHR---TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 223 ~pLV~~vl~G---~N~tifAYGqTGSGKTyTm 251 (716)
-+-++.++.| ....+.-+|++|+|||..+
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 3446677654 2346778999999999985
No 196
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=26.33 E-value=24 Score=41.93 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=34.7
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHhcCCC----ccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIFHRTK----ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~G~N----~tifAYGqTGSGKTyTm 251 (716)
...||.|-+-+..-+++.+.+.-||-. .+|.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 356788877666556665554445542 4555544 36999999999999875
No 197
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=26.02 E-value=16 Score=34.45 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.5
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999876
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.00 E-value=18 Score=37.68 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.0
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
..+.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35556799999999998
No 199
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=25.99 E-value=18 Score=35.84 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=23.8
Q ss_pred cEEEeCCCCCCCcccc------CCCCccchHHHHHH
Q 042351 236 TCFAYGQTGSGKTYTM------QPLPLKASHDILRL 265 (716)
Q Consensus 236 tifAYGqTGSGKTyTm------~Gl~~~a~~~if~~ 265 (716)
.||-.|+.||||++-. +|++.....++++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~ 66 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRA 66 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHH
Confidence 4788999999998754 57777777888765
No 200
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.81 E-value=74 Score=26.57 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042351 672 LDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLNEYN 708 (716)
Q Consensus 672 iD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~eeE 708 (716)
.|+-|..|+.++-+....|..|+.+|..+..+|++-+
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567888999999999999999999999999988644
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=25.79 E-value=13 Score=38.38 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=16.8
Q ss_pred HHhcCCCccEEEeCCCCCCCcccc
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367889999999999999999876
No 202
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=25.71 E-value=18 Score=33.50 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.6
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
..|+..|..|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999876
No 203
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.70 E-value=30 Score=40.38 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=15.1
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.++-||++|+|||++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999999763
No 204
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=25.68 E-value=16 Score=34.22 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.4
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.+.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999987
No 205
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=25.59 E-value=24 Score=37.22 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=14.3
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
..+.-.|++|+|||+|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35666899999999988
No 206
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=25.47 E-value=16 Score=37.92 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.4
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.+.-.|++|||||+++.
T Consensus 102 vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 56678999999999983
No 207
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=25.16 E-value=17 Score=34.97 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.1
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
++.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999887
No 208
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=25.08 E-value=15 Score=39.00 Aligned_cols=16 Identities=50% Similarity=0.623 Sum_probs=13.0
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.+.-.|+||||||+++
T Consensus 177 ~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 177 VIVVAGETGSGKTTLM 192 (361)
T ss_dssp CEEEEESSSSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455599999999987
No 209
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=25.06 E-value=26 Score=37.93 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=14.0
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4788999999999984
No 210
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=24.76 E-value=1.4e+02 Score=27.46 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=28.0
Q ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcC
Q 042351 628 DDLNALLKEEEDLVSA-HRKQVEETMDVVREEMNLLVEADQ 667 (716)
Q Consensus 628 e~I~~ILeEEE~LIaa-HR~~IeetmeivkEEm~LL~~vdq 667 (716)
+.+..||++|..+|.. +. ++....++++...||..+++
T Consensus 21 ~~L~~lL~~E~~~L~~~~d--~~~L~~i~~~K~~ll~~L~~ 59 (154)
T 3opc_A 21 VEFLHALEAETEALMDRRA--HESLQAAVQRKETLADDLAQ 59 (154)
T ss_dssp HHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877 65 56778888888788775554
No 211
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.65 E-value=22 Score=39.57 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=15.8
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++-||++|+|||+++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578999999999999873
No 212
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=24.63 E-value=33 Score=38.38 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.6
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999987
No 213
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=24.60 E-value=16 Score=38.39 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=13.6
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.+.-.|+||||||+++
T Consensus 173 ~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp CEEEEESTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999987
No 214
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=24.58 E-value=27 Score=42.45 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=17.6
Q ss_pred HHHHhcCCCccEEEeCCCCCCCccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYT 250 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyT 250 (716)
|..+++|. .++..++||||||.+
T Consensus 48 I~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHcCC--CEEEEECCCCcHHHH
Confidence 44566775 478899999999964
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=24.51 E-value=15 Score=37.46 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.3
Q ss_pred CccEEEeCCCCCCCcccc
Q 042351 234 KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm 251 (716)
+-++...|++|+|||..|
T Consensus 2 ~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEEESSSSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 446778899999999887
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=24.30 E-value=31 Score=38.35 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.1
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999986
No 217
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=24.25 E-value=4.7e+02 Score=26.26 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=59.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 628 DDLNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLN 705 (716)
Q Consensus 628 e~I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~ 705 (716)
..+..|...|-.+|.+|.+.--+.+..=++ ...-...+ |-||.+=.++|..+|..=.+.-..+-.++.++|.+||
T Consensus 23 r~L~~LIk~EK~vi~s~e~~are~~~~A~~-Ls~WG~~e--dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK 97 (234)
T 3plt_A 23 RKLSQLVKTEKGVLRAMEVVASERREAAKQ-LSLWGADN--DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLK 97 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHhcCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999886666655443 22223333 6699999999999999999999999999999999988
No 218
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=24.03 E-value=25 Score=39.39 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=19.0
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~ 252 (716)
++..++.|. .|+-||++|+|||+...
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHHH
Confidence 344444453 67889999999999874
No 219
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=23.98 E-value=18 Score=35.26 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.1
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.+.-.|++|||||..+
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999887
No 220
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=23.81 E-value=32 Score=40.85 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=15.4
Q ss_pred ccEEEeCCCCCCCcccc
Q 042351 235 ATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm 251 (716)
..++-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57999999999999876
No 221
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=23.58 E-value=23 Score=36.03 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.8
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++-+|+.|+|||..+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 678899999999998873
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=23.52 E-value=35 Score=39.67 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.7
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
+.++-||++|+|||++..
T Consensus 489 ~~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 478999999999998873
No 223
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=23.39 E-value=22 Score=32.53 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.9
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999865
No 224
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=23.34 E-value=26 Score=36.09 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=14.2
Q ss_pred CccEEEeCCCCCCCcccc
Q 042351 234 KATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm 251 (716)
...|.-.|.+|||||+.+
T Consensus 31 ~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345666799999999876
No 225
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=23.27 E-value=28 Score=40.84 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=18.5
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..++.|.+ ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 445567765 677899999999874
No 226
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=23.21 E-value=28 Score=37.99 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=13.3
Q ss_pred cEEEeCCCCCCCccc
Q 042351 236 TCFAYGQTGSGKTYT 250 (716)
Q Consensus 236 tifAYGqTGSGKTyT 250 (716)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 467889999999998
No 227
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=23.20 E-value=19 Score=34.61 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=14.1
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.+.-.|++|+|||.++.
T Consensus 3 ~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CEEEESCCSSCHHHHHH
T ss_pred EEEEECCCCChHHHHHH
Confidence 45678999999999883
No 228
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=23.14 E-value=21 Score=35.70 Aligned_cols=16 Identities=44% Similarity=0.495 Sum_probs=13.1
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|++|||||..-
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678999999999743
No 229
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=23.11 E-value=18 Score=42.86 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=33.0
Q ss_pred EEEeceecCCCCCcHHhhhhcchhhHH-HHhcC----CCccEEEeCCCCCCCcccc
Q 042351 201 EFVFDAVLNEDVTNEEVYSETVEPIVP-LIFHR----TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 201 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~G----~N~tifAYGqTGSGKTyTm 251 (716)
.+.||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|+|||+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 467888887766555555554443332 22322 2346899999999999876
No 230
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=22.90 E-value=22 Score=32.81 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.8
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999865
No 231
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=22.85 E-value=19 Score=33.43 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.9
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678899999999876
No 232
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=22.68 E-value=26 Score=39.84 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.9
Q ss_pred CccEEEeCCCCCCCccccC
Q 042351 234 KATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 234 N~tifAYGqTGSGKTyTm~ 252 (716)
+..++..|..|||||+++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3567789999999999974
No 233
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.66 E-value=2.8e+02 Score=30.62 Aligned_cols=29 Identities=10% Similarity=0.004 Sum_probs=11.1
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 042351 664 EADQPGNQLDIYICKLNALLSKKAAVIVQ 692 (716)
Q Consensus 664 ~vdqpg~diD~Yvt~L~~ILs~K~~~I~~ 692 (716)
+..+-..+++.|+..+..+|-.+.+-+.+
T Consensus 76 ~~s~s~~~s~~y~~~~~~~lk~~~~q~~d 104 (491)
T 1m1j_A 76 DSQNKYKTSNRVIVETINILKPGLEGAQQ 104 (491)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHhhhcc
Confidence 33333333444444444333333333333
No 234
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=22.64 E-value=23 Score=38.79 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=16.4
Q ss_pred HHhcCCCccEEEeCCCCCCCcccc
Q 042351 228 LIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 228 ~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
.++.|.+ ++..|+||||||.+.
T Consensus 124 ~~~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 124 EGLVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHHSE--EEEECCSTTTHHHHH
T ss_pred HHHhcCC--cEEEeCCCCCHHHHH
Confidence 3445533 577899999999986
No 235
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=22.56 E-value=29 Score=37.68 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=15.6
Q ss_pred hcCCCccEEEeCCCCCCCcccc
Q 042351 230 FHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 230 l~G~N~tifAYGqTGSGKTyTm 251 (716)
++|.+ ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 34554 578899999999984
No 236
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=22.47 E-value=23 Score=33.64 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=14.1
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999875
No 237
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=22.26 E-value=47 Score=38.27 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=51.0
Q ss_pred EEeceecCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCCCC-------------ccchHHHHHHHhh
Q 042351 202 FVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLP-------------LKASHDILRLMHQ 268 (716)
Q Consensus 202 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~Gl~-------------~~a~~~if~~i~~ 268 (716)
|..-.-|.|...|..-++. +++.+-.|.. .....|.||||||++|..+. ...+..++..+..
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~-~~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKK-HQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCS-EEEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCC-cEEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 5556667888888877655 4555555643 24567999999999995311 1123456666666
Q ss_pred hccccceeeEEEEEEEec
Q 042351 269 MHRSQGFQLYVSFFEIYG 286 (716)
Q Consensus 269 ~~~~~~~~V~vS~~EIYn 286 (716)
.........+.||+.-|.
T Consensus 80 ~~~~~~v~~fps~yd~~~ 97 (661)
T 2d7d_A 80 FFPNNAVEYFVSYYDYYQ 97 (661)
T ss_dssp HCTTSEEEEECCCEEEEE
T ss_pred HcCCCcEEEccccccccC
Confidence 544445667777766665
No 238
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=22.24 E-value=17 Score=40.54 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=18.4
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+|+.+++|.+ ++..++||+|||.+.
T Consensus 33 ~i~~il~g~d--~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRD--CLVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCcHHHHHH
Confidence 3455677876 466789999999864
No 239
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.12 E-value=74 Score=20.68 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042351 688 AVIVQLQTRLAQFQRHLN 705 (716)
Q Consensus 688 ~~I~~Lq~rL~~F~~~L~ 705 (716)
..+..||.||..++..|+
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456788999998888875
No 240
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=22.02 E-value=27 Score=33.16 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=15.0
Q ss_pred CCccEEEeCCCCCCCcccc
Q 042351 233 TKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm 251 (716)
....|.-.|.+|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3446677899999999876
No 241
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=22.00 E-value=19 Score=34.38 Aligned_cols=17 Identities=29% Similarity=0.220 Sum_probs=14.5
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999875
No 242
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.92 E-value=16 Score=36.36 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.2
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++-||..|+|||..+.
T Consensus 13 ~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELI 30 (223)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 467788999999998875
No 243
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.89 E-value=27 Score=41.42 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=15.1
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++..|+.|||||+|+.
T Consensus 376 ~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 346789999999999974
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=21.81 E-value=22 Score=36.83 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=14.6
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..+.-.|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999984
No 245
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=21.76 E-value=28 Score=40.19 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=41.5
Q ss_pred cCCCCCcHHhhhhcchhhHHHHhcCCCccEEEeCCCCCCCccccCCCC-------------ccchHHHHHHHhhhccccc
Q 042351 208 LNEDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLP-------------LKASHDILRLMHQMHRSQG 274 (716)
Q Consensus 208 Fd~~asQeeVy~~~v~pLV~~vl~G~N~tifAYGqTGSGKTyTm~Gl~-------------~~a~~~if~~i~~~~~~~~ 274 (716)
|.+.-.|..-+.. +++.+-.|... ....|.||||||+||..+. ...+..++..+........
T Consensus 7 ~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~~~~~~~ 81 (664)
T 1c4o_A 7 PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPENA 81 (664)
T ss_dssp CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCTTSE
T ss_pred CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHHHCCCCe
Confidence 3677777766554 45555556432 4567999999999995311 0123456666665544444
Q ss_pred eeeEEEEE
Q 042351 275 FQLYVSFF 282 (716)
Q Consensus 275 ~~V~vS~~ 282 (716)
...+.||+
T Consensus 82 V~~fps~y 89 (664)
T 1c4o_A 82 VEYFISYY 89 (664)
T ss_dssp EEECCCGG
T ss_pred EEEcCchh
Confidence 55556653
No 246
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=21.71 E-value=29 Score=41.70 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=18.3
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcccc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTyTm 251 (716)
+..++.|.+ ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 445567866 577899999999874
No 247
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=21.66 E-value=30 Score=40.87 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=16.1
Q ss_pred CCCccEEEeCCCCCCCcccc
Q 042351 232 RTKATCFAYGQTGSGKTYTM 251 (716)
Q Consensus 232 G~N~tifAYGqTGSGKTyTm 251 (716)
+....++..|+||||||...
T Consensus 387 ~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 387 EKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp SSCCCCEEECCSSSSHHHHH
T ss_pred cCCCcEEEEcCCCCCHHHHH
Confidence 44456889999999999875
No 248
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=21.64 E-value=24 Score=31.98 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=13.5
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999865
No 249
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=21.37 E-value=29 Score=41.15 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=15.2
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++..|+.|||||+|+.
T Consensus 372 ~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 356789999999999974
No 250
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=21.23 E-value=26 Score=40.13 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=17.2
Q ss_pred CCccEEEeCCCCCCCccccC
Q 042351 233 TKATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 233 ~N~tifAYGqTGSGKTyTm~ 252 (716)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46678889999999999984
No 251
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=21.21 E-value=22 Score=32.64 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.8
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|..|||||+.+
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5777899999999875
No 252
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=20.98 E-value=22 Score=37.97 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.5
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.+.-.|++|||||+|+.
T Consensus 159 vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 56678999999999983
No 253
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=20.48 E-value=27 Score=33.33 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.4
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999765
No 254
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.26 E-value=27 Score=32.29 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.7
Q ss_pred cEEEeCCCCCCCcccc
Q 042351 236 TCFAYGQTGSGKTYTM 251 (716)
Q Consensus 236 tifAYGqTGSGKTyTm 251 (716)
.|+-.|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999864
No 255
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=20.20 E-value=27 Score=35.51 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=15.9
Q ss_pred ccEEEeCCCCCCCccccC
Q 042351 235 ATCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 235 ~tifAYGqTGSGKTyTm~ 252 (716)
..++-+|+.|+|||..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 588999999999998873
No 256
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=20.15 E-value=37 Score=41.47 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHhcCCCccEEEeCCCCCCCcc
Q 042351 226 VPLIFHRTKATCFAYGQTGSGKTY 249 (716)
Q Consensus 226 V~~vl~G~N~tifAYGqTGSGKTy 249 (716)
+..+++|.| ++..++||||||.
T Consensus 65 i~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 65 AKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHhCCC--EEEEcCCCCCHHH
Confidence 445667765 6788999999995
No 257
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=20.05 E-value=32 Score=38.61 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.3
Q ss_pred cEEEeCCCCCCCccccC
Q 042351 236 TCFAYGQTGSGKTYTMQ 252 (716)
Q Consensus 236 tifAYGqTGSGKTyTm~ 252 (716)
.|.-.|.+|||||.++.
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 46677999999999983
No 258
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.02 E-value=2.4e+02 Score=21.23 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042351 671 QLDIYICKLNALLSKKAAVIVQLQTRLAQFQRHLN 705 (716)
Q Consensus 671 diD~Yvt~L~~ILs~K~~~I~~Lq~rL~~F~~~L~ 705 (716)
|+++-|.+|+.-|+.=.-....|.+.....|..|+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766544444444444444555554
Done!