Query 042352
Match_columns 445
No_of_seqs 190 out of 2139
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1232 HemY Protoporphyrinoge 100.0 8.2E-39 1.8E-43 305.0 28.7 378 50-444 2-418 (444)
2 PLN02612 phytoene desaturase 100.0 9.5E-38 2.1E-42 314.5 36.6 394 47-445 92-518 (567)
3 PRK07233 hypothetical protein; 100.0 1.3E-37 2.9E-42 308.3 35.6 381 50-445 1-401 (434)
4 TIGR00562 proto_IX_ox protopor 100.0 8.9E-38 1.9E-42 311.6 33.2 380 48-445 2-433 (462)
5 PRK11883 protoporphyrinogen ox 100.0 2.2E-37 4.8E-42 308.2 34.8 384 50-445 2-425 (451)
6 PRK12416 protoporphyrinogen ox 100.0 4.5E-37 9.7E-42 306.1 34.0 386 49-445 2-434 (463)
7 PLN02576 protoporphyrinogen ox 100.0 2.2E-36 4.7E-41 303.9 33.6 386 47-445 11-460 (496)
8 PLN02487 zeta-carotene desatur 100.0 1.9E-35 4E-40 294.2 35.9 395 48-445 75-523 (569)
9 TIGR02732 zeta_caro_desat caro 100.0 1.5E-35 3.2E-40 293.3 32.0 392 50-445 1-447 (474)
10 TIGR02731 phytoene_desat phyto 100.0 9E-35 1.9E-39 288.7 35.3 391 50-445 1-426 (453)
11 PRK07208 hypothetical protein; 100.0 5.1E-35 1.1E-39 292.7 31.0 383 45-445 1-432 (479)
12 TIGR02734 crtI_fam phytoene de 100.0 4E-34 8.7E-39 287.6 32.7 389 51-445 1-464 (502)
13 TIGR02733 desat_CrtD C-3',4' d 100.0 8.9E-34 1.9E-38 284.2 34.9 391 49-445 2-464 (492)
14 TIGR02730 carot_isom carotene 100.0 7.4E-33 1.6E-37 277.1 32.0 354 49-405 1-412 (493)
15 COG1233 Phytoene dehydrogenase 100.0 1.2E-32 2.5E-37 273.3 27.3 393 47-445 2-455 (487)
16 PLN02268 probable polyamine ox 100.0 6.4E-32 1.4E-36 267.1 22.6 367 49-445 1-404 (435)
17 TIGR03467 HpnE squalene-associ 100.0 6.2E-30 1.3E-34 252.3 32.3 369 62-445 1-391 (419)
18 PLN02529 lysine-specific histo 100.0 1.6E-28 3.6E-33 249.1 29.8 347 19-403 139-516 (738)
19 KOG4254 Phytoene desaturase [C 100.0 1.6E-28 3.4E-33 225.2 23.7 208 236-445 252-520 (561)
20 KOG1276 Protoporphyrinogen oxi 100.0 1E-27 2.2E-32 219.2 26.8 366 48-423 11-448 (491)
21 PLN02568 polyamine oxidase 100.0 5.8E-28 1.3E-32 240.8 27.6 345 45-403 2-422 (539)
22 COG1231 Monoamine oxidase [Ami 100.0 2.5E-28 5.5E-33 227.3 20.5 374 46-445 5-417 (450)
23 PLN02676 polyamine oxidase 100.0 3.5E-27 7.7E-32 233.7 25.3 371 47-445 25-443 (487)
24 PLN03000 amine oxidase 100.0 1.4E-26 2.9E-31 235.7 28.9 368 47-445 183-593 (881)
25 PLN02328 lysine-specific histo 100.0 8.5E-27 1.8E-31 237.6 27.4 331 46-403 236-596 (808)
26 KOG0685 Flavin-containing amin 100.0 3.1E-27 6.8E-32 219.6 21.4 345 46-423 19-432 (498)
27 KOG0029 Amine oxidase [Seconda 99.9 3E-26 6.4E-31 224.4 23.5 337 46-403 13-379 (501)
28 PLN02976 amine oxidase 99.9 1.3E-25 2.8E-30 234.2 26.6 373 47-445 692-1156(1713)
29 COG2907 Predicted NAD/FAD-bind 99.9 5.3E-26 1.1E-30 202.3 20.2 282 47-336 7-309 (447)
30 PF01593 Amino_oxidase: Flavin 99.9 2.5E-26 5.4E-31 227.9 16.8 379 58-445 1-423 (450)
31 COG3349 Uncharacterized conser 99.9 8.9E-25 1.9E-29 207.7 21.7 394 49-445 1-433 (485)
32 PTZ00363 rab-GDP dissociation 99.9 2.6E-21 5.6E-26 187.9 28.9 249 45-302 1-288 (443)
33 COG3380 Predicted NAD/FAD-depe 99.9 4.7E-22 1E-26 171.7 10.7 287 49-445 2-304 (331)
34 TIGR00031 UDP-GALP_mutase UDP- 99.8 3.8E-18 8.2E-23 162.0 20.4 286 49-364 2-299 (377)
35 PRK13977 myosin-cross-reactive 99.8 2.8E-17 6.1E-22 161.2 20.2 233 47-307 21-296 (576)
36 PF13450 NAD_binding_8: NAD(P) 99.7 8.5E-17 1.8E-21 113.9 6.6 66 53-118 1-68 (68)
37 COG0562 Glf UDP-galactopyranos 99.7 1.7E-15 3.7E-20 134.5 13.0 236 48-309 1-246 (374)
38 COG2081 Predicted flavoprotein 99.6 8.9E-15 1.9E-19 135.0 13.3 162 46-302 1-165 (408)
39 PF00996 GDI: GDP dissociation 99.5 4.1E-13 8.9E-18 129.1 18.5 242 45-298 1-283 (438)
40 COG0579 Predicted dehydrogenas 99.5 1.3E-13 2.7E-18 131.6 13.8 204 46-312 1-221 (429)
41 PF03486 HI0933_like: HI0933-l 99.5 3.6E-14 7.9E-19 136.7 8.2 57 246-303 107-165 (409)
42 TIGR01373 soxB sarcosine oxida 99.5 1.5E-11 3.3E-16 120.7 24.8 40 46-85 28-69 (407)
43 PRK12409 D-amino acid dehydrog 99.5 2E-11 4.4E-16 120.0 25.6 40 49-88 2-41 (410)
44 PF01266 DAO: FAD dependent ox 99.5 1.6E-13 3.4E-18 132.3 9.6 69 240-311 136-209 (358)
45 COG1635 THI4 Ribulose 1,5-bisp 99.5 5.9E-13 1.3E-17 112.3 11.0 67 48-124 30-98 (262)
46 PRK00711 D-amino acid dehydrog 99.4 2.9E-11 6.3E-16 119.2 24.1 54 249-304 202-257 (416)
47 PRK11259 solA N-methyltryptoph 99.4 6.4E-11 1.4E-15 115.1 23.9 42 47-88 2-43 (376)
48 PRK11728 hydroxyglutarate oxid 99.4 9.2E-12 2E-16 121.6 13.8 60 248-310 149-212 (393)
49 KOG2820 FAD-dependent oxidored 99.3 6.7E-11 1.5E-15 106.3 16.9 68 240-311 149-218 (399)
50 TIGR01377 soxA_mon sarcosine o 99.3 2.1E-11 4.6E-16 118.7 13.9 37 49-85 1-37 (380)
51 TIGR03329 Phn_aa_oxid putative 99.3 4.9E-11 1.1E-15 118.7 15.0 52 249-304 184-237 (460)
52 PTZ00383 malate:quinone oxidor 99.3 1E-10 2.2E-15 115.8 16.0 43 261-305 232-274 (497)
53 PRK01747 mnmC bifunctional tRN 99.3 6E-11 1.3E-15 123.3 14.5 64 239-304 396-463 (662)
54 COG0665 DadA Glycine/D-amino a 99.3 3.7E-10 7.9E-15 110.3 18.5 40 46-85 2-41 (387)
55 PRK04176 ribulose-1,5-biphosph 99.2 5.8E-11 1.3E-15 108.0 11.5 41 47-87 24-64 (257)
56 TIGR00292 thiazole biosynthesi 99.2 9.3E-11 2E-15 106.3 12.6 41 47-87 20-60 (254)
57 PRK05257 malate:quinone oxidor 99.2 1.4E-10 3E-15 115.3 13.9 44 46-89 3-48 (494)
58 TIGR03364 HpnW_proposed FAD de 99.2 3E-10 6.6E-15 109.9 15.2 34 49-82 1-34 (365)
59 PRK11101 glpA sn-glycerol-3-ph 99.2 1.2E-10 2.6E-15 117.9 12.0 38 48-85 6-43 (546)
60 PF01946 Thi4: Thi4 family; PD 99.2 1.4E-11 3.1E-16 104.9 4.2 70 47-126 16-87 (230)
61 PRK08274 tricarballylate dehyd 99.2 1.4E-10 3E-15 115.9 11.9 43 45-87 1-45 (466)
62 COG0644 FixC Dehydrogenases (f 99.2 8.4E-10 1.8E-14 107.7 17.0 43 47-89 2-44 (396)
63 TIGR01320 mal_quin_oxido malat 99.2 1.6E-10 3.6E-15 114.7 11.8 41 49-89 1-43 (483)
64 PRK13339 malate:quinone oxidor 99.2 2.2E-10 4.8E-15 113.1 12.1 43 47-89 5-49 (497)
65 PRK06481 fumarate reductase fl 99.1 2E-10 4.3E-15 115.4 11.1 43 45-87 58-100 (506)
66 PLN02464 glycerol-3-phosphate 99.1 1.1E-08 2.3E-13 105.1 23.7 40 46-85 69-108 (627)
67 PF06100 Strep_67kDa_ant: Stre 99.1 1.6E-09 3.6E-14 103.7 15.9 230 48-303 2-273 (500)
68 KOG1439 RAB proteins geranylge 99.1 6.5E-10 1.4E-14 102.3 12.5 244 45-300 1-285 (440)
69 PRK07236 hypothetical protein; 99.1 1.5E-09 3.2E-14 105.9 15.4 58 250-309 102-160 (386)
70 PF13738 Pyr_redox_3: Pyridine 99.1 3.9E-10 8.4E-15 99.6 9.8 49 252-303 89-137 (203)
71 PLN02661 Putative thiazole syn 99.1 2.1E-09 4.6E-14 100.1 13.9 40 48-87 92-132 (357)
72 COG0654 UbiH 2-polyprenyl-6-me 99.1 8.2E-09 1.8E-13 100.6 18.3 81 249-331 105-190 (387)
73 PRK08773 2-octaprenyl-3-methyl 99.1 8.7E-10 1.9E-14 107.7 11.2 49 260-310 127-176 (392)
74 COG0578 GlpA Glycerol-3-phosph 99.1 1E-08 2.2E-13 100.4 18.2 42 47-88 11-52 (532)
75 PRK12266 glpD glycerol-3-phosp 99.1 7.8E-10 1.7E-14 111.1 10.9 43 45-87 3-45 (508)
76 TIGR02032 GG-red-SF geranylger 99.1 5.1E-08 1.1E-12 91.3 22.6 37 49-85 1-37 (295)
77 PRK10157 putative oxidoreducta 99.1 1.2E-09 2.5E-14 107.7 11.7 40 47-86 4-43 (428)
78 PRK13369 glycerol-3-phosphate 99.0 1.2E-09 2.5E-14 109.9 11.4 41 45-85 3-43 (502)
79 PRK06847 hypothetical protein; 99.0 1.1E-09 2.3E-14 106.5 10.6 44 260-305 121-164 (375)
80 PRK06184 hypothetical protein; 99.0 1.6E-09 3.4E-14 109.3 11.2 57 47-120 2-60 (502)
81 PRK07588 hypothetical protein; 99.0 1E-09 2.2E-14 107.3 9.4 56 252-309 107-164 (391)
82 PF00890 FAD_binding_2: FAD bi 99.0 1.4E-09 2.9E-14 107.4 10.3 59 246-305 139-204 (417)
83 PRK06753 hypothetical protein; 99.0 2.2E-09 4.7E-14 104.3 11.4 60 249-310 99-159 (373)
84 PRK06834 hypothetical protein; 99.0 2.6E-09 5.6E-14 106.7 11.6 49 260-310 114-163 (488)
85 TIGR00275 flavoprotein, HI0933 99.0 1.1E-09 2.4E-14 106.8 8.7 36 52-87 1-36 (400)
86 PRK07333 2-octaprenyl-6-methox 99.0 1.6E-09 3.4E-14 106.4 9.8 59 250-310 113-174 (403)
87 PRK09126 hypothetical protein; 99.0 7.9E-10 1.7E-14 108.1 7.6 49 260-310 125-174 (392)
88 PRK07364 2-octaprenyl-6-methox 99.0 3.6E-09 7.8E-14 104.3 12.0 43 41-83 11-53 (415)
89 PRK12845 3-ketosteroid-delta-1 99.0 1.6E-08 3.4E-13 102.6 16.5 42 46-88 14-55 (564)
90 PRK05714 2-octaprenyl-3-methyl 99.0 3.9E-09 8.5E-14 103.6 11.7 50 260-311 126-176 (405)
91 PRK07190 hypothetical protein; 99.0 8.2E-09 1.8E-13 103.1 13.7 50 260-311 123-173 (487)
92 PRK07045 putative monooxygenas 99.0 7.3E-09 1.6E-13 101.1 13.1 48 260-308 121-170 (388)
93 PRK05868 hypothetical protein; 99.0 6.7E-09 1.4E-13 100.5 12.6 59 251-311 108-168 (372)
94 PRK07121 hypothetical protein; 99.0 1.7E-08 3.8E-13 101.4 15.8 41 47-87 19-59 (492)
95 TIGR01988 Ubi-OHases Ubiquinon 99.0 2E-09 4.4E-14 105.0 8.8 59 250-310 108-170 (385)
96 PRK08850 2-octaprenyl-6-methox 99.0 3.7E-09 7.9E-14 103.8 10.5 50 260-311 126-176 (405)
97 PRK05192 tRNA uridine 5-carbox 98.9 4.8E-09 1E-13 104.8 11.3 41 46-86 2-43 (618)
98 TIGR03219 salicylate_mono sali 98.9 5.8E-09 1.3E-13 102.7 11.7 59 249-309 106-165 (414)
99 PRK08013 oxidoreductase; Provi 98.9 3E-09 6.5E-14 104.2 9.5 50 260-311 126-176 (400)
100 PRK08163 salicylate hydroxylas 98.9 8.7E-09 1.9E-13 100.9 12.7 38 47-84 3-40 (396)
101 PRK06116 glutathione reductase 98.9 3.7E-09 8E-14 105.2 10.0 42 46-88 2-43 (450)
102 PRK12844 3-ketosteroid-delta-1 98.9 2.4E-08 5.2E-13 101.4 15.0 41 47-87 5-45 (557)
103 KOG2844 Dimethylglycine dehydr 98.9 8.6E-09 1.9E-13 100.6 11.0 54 249-304 188-243 (856)
104 PRK06175 L-aspartate oxidase; 98.9 6E-09 1.3E-13 102.6 10.2 39 47-86 3-41 (433)
105 PRK08849 2-octaprenyl-3-methyl 98.9 6.7E-09 1.4E-13 101.2 10.4 49 260-310 125-174 (384)
106 PRK10015 oxidoreductase; Provi 98.9 1.3E-08 2.7E-13 100.2 12.4 39 47-85 4-42 (429)
107 PRK07494 2-octaprenyl-6-methox 98.9 6.5E-09 1.4E-13 101.5 10.3 38 46-83 5-42 (388)
108 PF05834 Lycopene_cycl: Lycope 98.9 5.2E-07 1.1E-11 87.4 22.9 126 260-403 100-228 (374)
109 PRK05329 anaerobic glycerol-3- 98.9 9.9E-09 2.1E-13 99.6 10.9 63 249-312 260-326 (422)
110 PLN02697 lycopene epsilon cycl 98.9 9E-07 1.9E-11 88.5 24.8 34 47-80 107-140 (529)
111 PRK07608 ubiquinone biosynthes 98.9 1.4E-08 3E-13 99.2 11.7 38 47-84 4-41 (388)
112 PRK12842 putative succinate de 98.9 1.7E-08 3.7E-13 103.1 12.6 41 48-88 9-49 (574)
113 TIGR01984 UbiH 2-polyprenyl-6- 98.9 7E-09 1.5E-13 101.0 9.2 50 260-311 120-170 (382)
114 PRK06183 mhpA 3-(3-hydroxyphen 98.9 3E-08 6.4E-13 100.9 13.9 39 46-84 8-46 (538)
115 PF12831 FAD_oxidored: FAD dep 98.9 2.1E-09 4.5E-14 105.8 5.3 39 50-88 1-39 (428)
116 PRK07573 sdhA succinate dehydr 98.9 1.2E-08 2.5E-13 105.0 10.8 39 47-85 34-72 (640)
117 KOG1399 Flavin-containing mono 98.9 2.4E-08 5.3E-13 97.0 12.4 44 46-89 4-47 (448)
118 TIGR01813 flavo_cyto_c flavocy 98.9 1.7E-08 3.7E-13 100.1 11.7 38 50-87 1-39 (439)
119 PRK08243 4-hydroxybenzoate 3-m 98.9 4.2E-08 9E-13 95.9 14.1 35 48-82 2-36 (392)
120 PLN00128 Succinate dehydrogena 98.9 2.5E-08 5.4E-13 102.3 12.9 40 47-86 49-88 (635)
121 PRK06185 hypothetical protein; 98.9 2.6E-08 5.7E-13 97.9 12.6 36 47-82 5-40 (407)
122 PRK05732 2-octaprenyl-6-methox 98.8 9.1E-09 2E-13 100.7 9.2 49 260-310 127-176 (395)
123 TIGR02485 CobZ_N-term precorri 98.8 1.1E-08 2.5E-13 101.1 9.5 59 243-302 118-181 (432)
124 PRK12834 putative FAD-binding 98.8 5.1E-08 1.1E-12 99.2 14.3 42 47-88 3-46 (549)
125 PF13454 NAD_binding_9: FAD-NA 98.8 7.9E-08 1.7E-12 80.7 13.0 41 260-302 114-155 (156)
126 PRK12839 hypothetical protein; 98.8 8.3E-08 1.8E-12 97.6 15.6 42 47-88 7-48 (572)
127 PRK11445 putative oxidoreducta 98.8 3.3E-08 7.2E-13 95.0 12.2 62 48-121 1-62 (351)
128 PLN02463 lycopene beta cyclase 98.8 5.3E-08 1.1E-12 95.7 13.6 37 46-82 26-62 (447)
129 PRK08132 FAD-dependent oxidore 98.8 8.1E-08 1.8E-12 98.0 15.3 38 46-83 21-58 (547)
130 PRK08020 ubiF 2-octaprenyl-3-m 98.8 3.9E-08 8.4E-13 96.1 12.5 49 260-310 127-176 (391)
131 PRK08958 sdhA succinate dehydr 98.8 3.5E-08 7.6E-13 100.8 12.4 40 47-86 6-45 (588)
132 PRK07843 3-ketosteroid-delta-1 98.8 6.1E-08 1.3E-12 98.6 14.1 42 47-88 6-47 (557)
133 TIGR03378 glycerol3P_GlpB glyc 98.8 2.5E-08 5.4E-13 95.7 10.2 62 249-311 264-329 (419)
134 PRK12843 putative FAD-binding 98.8 7.5E-08 1.6E-12 98.4 14.2 42 47-88 15-56 (578)
135 PRK09897 hypothetical protein; 98.8 5.5E-08 1.2E-12 97.1 12.9 41 49-89 2-45 (534)
136 TIGR01292 TRX_reduct thioredox 98.8 7.5E-08 1.6E-12 90.4 13.3 38 49-87 1-38 (300)
137 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 1.2E-07 2.7E-12 92.3 14.8 35 48-82 2-36 (390)
138 TIGR01812 sdhA_frdA_Gneg succi 98.8 4.6E-08 1E-12 100.0 12.3 38 50-87 1-38 (566)
139 PRK09078 sdhA succinate dehydr 98.8 4.9E-08 1.1E-12 100.0 12.4 40 47-86 11-50 (598)
140 PRK12835 3-ketosteroid-delta-1 98.8 1.4E-07 3E-12 96.3 15.6 41 46-86 9-49 (584)
141 TIGR00551 nadB L-aspartate oxi 98.8 5.5E-08 1.2E-12 97.6 12.5 39 48-87 2-40 (488)
142 PRK06126 hypothetical protein; 98.8 2.1E-08 4.5E-13 102.3 9.7 37 46-82 5-41 (545)
143 PRK08244 hypothetical protein; 98.8 3.2E-08 6.9E-13 99.7 10.9 56 48-120 2-59 (493)
144 COG5044 MRS6 RAB proteins gera 98.8 3.6E-07 7.8E-12 83.6 16.2 241 47-298 5-278 (434)
145 PRK07803 sdhA succinate dehydr 98.8 7.1E-08 1.5E-12 99.3 13.2 51 48-99 8-58 (626)
146 PTZ00139 Succinate dehydrogena 98.8 6.2E-08 1.3E-12 99.4 12.7 41 47-87 28-68 (617)
147 PRK05945 sdhA succinate dehydr 98.8 4.4E-08 9.5E-13 100.1 11.1 40 47-86 2-43 (575)
148 PRK06263 sdhA succinate dehydr 98.7 1.5E-07 3.2E-12 95.7 14.3 39 47-86 6-45 (543)
149 PRK06069 sdhA succinate dehydr 98.7 1.4E-07 3E-12 96.6 14.0 40 48-87 5-47 (577)
150 PRK06475 salicylate hydroxylas 98.7 4.1E-08 8.9E-13 96.2 9.6 35 49-83 3-37 (400)
151 PRK08401 L-aspartate oxidase; 98.7 5.8E-08 1.3E-12 96.7 10.6 33 49-81 2-34 (466)
152 PRK07057 sdhA succinate dehydr 98.7 8.9E-08 1.9E-12 97.9 12.0 41 47-87 11-51 (591)
153 PRK06134 putative FAD-binding 98.7 2.4E-07 5.3E-12 94.7 15.1 43 46-88 10-52 (581)
154 PRK06617 2-octaprenyl-6-methox 98.7 6.5E-08 1.4E-12 93.8 10.3 49 260-311 119-168 (374)
155 PF01134 GIDA: Glucose inhibit 98.7 1.6E-08 3.6E-13 95.7 5.9 41 260-302 110-150 (392)
156 PLN02927 antheraxanthin epoxid 98.7 6E-08 1.3E-12 98.6 10.3 55 249-305 195-249 (668)
157 PLN00093 geranylgeranyl diphos 98.7 2.2E-08 4.7E-13 98.9 6.9 69 9-81 4-72 (450)
158 PRK15317 alkyl hydroperoxide r 98.7 1.8E-07 3.8E-12 94.6 13.5 40 46-87 209-248 (517)
159 PRK07804 L-aspartate oxidase; 98.7 2.3E-07 4.9E-12 94.1 14.3 40 47-86 15-54 (541)
160 TIGR01790 carotene-cycl lycope 98.7 2.1E-07 4.6E-12 90.9 13.7 36 50-85 1-36 (388)
161 PLN02815 L-aspartate oxidase 98.7 1.3E-07 2.9E-12 96.2 12.4 41 46-87 27-67 (594)
162 TIGR03140 AhpF alkyl hydropero 98.7 1.8E-07 4E-12 94.4 13.3 40 46-87 210-249 (515)
163 PRK08626 fumarate reductase fl 98.7 2.6E-08 5.6E-13 102.8 7.3 39 48-86 5-43 (657)
164 PRK07538 hypothetical protein; 98.7 1.3E-07 2.7E-12 93.2 11.9 35 49-83 1-35 (413)
165 PRK08275 putative oxidoreducta 98.7 9.9E-08 2.2E-12 97.1 11.1 39 47-85 8-48 (554)
166 PRK06452 sdhA succinate dehydr 98.7 6.3E-08 1.4E-12 98.6 9.6 41 47-87 4-44 (566)
167 PRK07395 L-aspartate oxidase; 98.7 1E-07 2.2E-12 96.6 10.9 39 47-86 8-46 (553)
168 PRK06854 adenylylsulfate reduc 98.7 1.7E-07 3.7E-12 96.2 12.6 38 48-85 11-50 (608)
169 PRK08205 sdhA succinate dehydr 98.7 1.7E-07 3.6E-12 96.0 12.4 38 47-85 4-41 (583)
170 PTZ00306 NADH-dependent fumara 98.7 1.1E-07 2.5E-12 104.2 11.7 41 47-87 408-448 (1167)
171 PRK08071 L-aspartate oxidase; 98.7 9.8E-08 2.1E-12 96.0 10.3 39 48-87 3-41 (510)
172 TIGR01989 COQ6 Ubiquinone bios 98.7 7.5E-08 1.6E-12 95.4 9.3 51 260-311 134-191 (437)
173 PF06039 Mqo: Malate:quinone o 98.7 6.3E-08 1.4E-12 92.0 7.8 60 247-307 180-247 (488)
174 PF00732 GMC_oxred_N: GMC oxid 98.6 3.1E-07 6.8E-12 86.1 12.2 36 49-84 1-37 (296)
175 PRK06996 hypothetical protein; 98.6 4.1E-07 9E-12 89.0 12.7 62 46-120 9-74 (398)
176 PLN02172 flavin-containing mon 98.6 5E-08 1.1E-12 96.4 6.2 43 47-89 9-51 (461)
177 PRK07512 L-aspartate oxidase; 98.6 1.3E-07 2.8E-12 95.2 9.2 55 249-304 137-197 (513)
178 TIGR03197 MnmC_Cterm tRNA U-34 98.6 6.2E-06 1.4E-10 80.3 20.6 55 248-304 135-190 (381)
179 TIGR02462 pyranose_ox pyranose 98.6 1.1E-06 2.3E-11 87.9 15.0 37 49-85 1-37 (544)
180 TIGR01176 fum_red_Fp fumarate 98.6 4.1E-07 9E-12 92.7 12.2 40 48-87 3-44 (580)
181 KOG2404 Fumarate reductase, fl 98.6 3.2E-07 7E-12 82.3 9.6 39 50-88 11-49 (477)
182 PTZ00058 glutathione reductase 98.6 5.7E-08 1.2E-12 98.1 5.3 42 47-89 47-88 (561)
183 TIGR01811 sdhA_Bsu succinate d 98.6 4.4E-07 9.6E-12 92.9 11.8 35 51-85 1-35 (603)
184 PRK06115 dihydrolipoamide dehy 98.5 8.5E-08 1.8E-12 95.7 5.4 42 47-88 2-43 (466)
185 PRK05249 soluble pyridine nucl 98.5 8.4E-08 1.8E-12 95.8 5.4 44 46-89 3-46 (461)
186 COG2072 TrkA Predicted flavopr 98.5 1.5E-07 3.3E-12 92.6 6.9 54 44-97 4-58 (443)
187 KOG2665 Predicted FAD-dependen 98.5 3.2E-06 6.9E-11 75.9 14.3 79 46-124 46-133 (453)
188 COG3075 GlpB Anaerobic glycero 98.5 1.1E-06 2.3E-11 79.3 11.1 61 250-311 260-324 (421)
189 TIGR00136 gidA glucose-inhibit 98.5 1.1E-06 2.4E-11 87.9 12.4 38 49-86 1-38 (617)
190 PRK07251 pyridine nucleotide-d 98.5 1.6E-07 3.4E-12 93.2 5.5 42 47-88 2-44 (438)
191 PRK12779 putative bifunctional 98.5 1.7E-07 3.7E-12 100.1 6.0 43 46-88 304-346 (944)
192 PRK06467 dihydrolipoamide dehy 98.5 1.9E-07 4E-12 93.3 5.8 43 46-88 2-44 (471)
193 TIGR03315 Se_ygfK putative sel 98.5 2.2E-07 4.7E-12 98.6 6.5 43 47-89 536-578 (1012)
194 PRK09231 fumarate reductase fl 98.5 6.7E-07 1.5E-11 91.4 9.9 40 48-87 4-45 (582)
195 COG3573 Predicted oxidoreducta 98.5 2.5E-06 5.5E-11 77.1 12.2 43 46-88 3-47 (552)
196 PRK08010 pyridine nucleotide-d 98.5 1.8E-07 4E-12 92.8 5.6 43 47-89 2-45 (441)
197 PRK06370 mercuric reductase; V 98.5 1.9E-07 4.2E-12 93.2 5.6 44 45-89 2-45 (463)
198 PRK02106 choline dehydrogenase 98.5 3.3E-06 7.1E-11 86.4 14.6 36 47-82 4-40 (560)
199 PRK05976 dihydrolipoamide dehy 98.4 2.6E-07 5.6E-12 92.5 5.8 43 46-89 2-44 (472)
200 PRK12831 putative oxidoreducta 98.4 3.7E-07 8E-12 90.7 6.5 43 46-88 138-180 (464)
201 TIGR03143 AhpF_homolog putativ 98.4 3.4E-07 7.3E-12 93.2 6.3 43 46-89 2-44 (555)
202 TIGR01424 gluta_reduc_2 glutat 98.4 2.8E-07 6.1E-12 91.5 5.4 41 48-89 2-42 (446)
203 PLN02852 ferredoxin-NADP+ redu 98.4 4.1E-07 8.9E-12 89.9 6.5 43 47-89 25-69 (491)
204 TIGR01350 lipoamide_DH dihydro 98.4 3.3E-07 7.2E-12 91.6 5.8 41 48-89 1-41 (461)
205 PRK07818 dihydrolipoamide dehy 98.4 3.6E-07 7.8E-12 91.3 5.9 43 46-89 2-44 (466)
206 TIGR01421 gluta_reduc_1 glutat 98.4 3.3E-07 7.1E-12 91.0 5.4 40 48-88 2-41 (450)
207 PRK06292 dihydrolipoamide dehy 98.4 3.4E-07 7.4E-12 91.4 5.5 41 47-88 2-42 (460)
208 TIGR02352 thiamin_ThiO glycine 98.4 5.1E-05 1.1E-09 72.5 20.3 56 248-305 137-194 (337)
209 KOG1298 Squalene monooxygenase 98.4 1.2E-06 2.5E-11 80.7 7.8 40 41-80 38-77 (509)
210 PF01494 FAD_binding_3: FAD bi 98.4 3E-07 6.5E-12 88.4 4.4 35 49-83 2-36 (356)
211 PRK06416 dihydrolipoamide dehy 98.4 4.5E-07 9.7E-12 90.6 5.6 42 47-89 3-44 (462)
212 COG2509 Uncharacterized FAD-de 98.4 2.1E-06 4.5E-11 81.2 9.5 56 248-304 173-230 (486)
213 PLN02985 squalene monooxygenas 98.4 6.8E-07 1.5E-11 89.8 6.8 42 41-82 36-77 (514)
214 PRK09853 putative selenate red 98.4 5.6E-07 1.2E-11 95.1 6.3 44 46-89 537-580 (1019)
215 PF07156 Prenylcys_lyase: Pren 98.4 6.2E-06 1.3E-10 78.6 12.7 115 187-305 69-188 (368)
216 KOG4405 GDP dissociation inhib 98.4 1.4E-05 3E-10 74.2 14.4 49 45-93 5-53 (547)
217 COG1148 HdrA Heterodisulfide r 98.3 3.9E-07 8.4E-12 86.2 4.3 45 46-90 122-166 (622)
218 TIGR01810 betA choline dehydro 98.3 2.5E-06 5.4E-11 86.7 10.5 49 260-309 208-260 (532)
219 COG0492 TrxB Thioredoxin reduc 98.3 1.1E-06 2.4E-11 81.6 6.3 44 47-90 2-45 (305)
220 TIGR02028 ChlP geranylgeranyl 98.3 7.3E-07 1.6E-11 87.1 5.4 37 49-85 1-37 (398)
221 PF04820 Trp_halogenase: Trypt 98.3 1.1E-06 2.4E-11 86.9 6.7 43 260-304 168-211 (454)
222 PRK12837 3-ketosteroid-delta-1 98.3 1E-06 2.2E-11 88.9 6.1 40 47-87 6-45 (513)
223 TIGR02023 BchP-ChlP geranylger 98.3 7.4E-07 1.6E-11 87.0 5.0 32 49-80 1-32 (388)
224 PRK12769 putative oxidoreducta 98.3 1.2E-06 2.5E-11 91.2 6.6 43 47-89 326-368 (654)
225 PRK14694 putative mercuric red 98.3 1.1E-06 2.3E-11 88.0 5.9 42 47-89 5-46 (468)
226 PRK12775 putative trifunctiona 98.3 1.1E-06 2.3E-11 94.9 6.2 42 47-88 429-470 (1006)
227 TIGR02053 MerA mercuric reduct 98.3 9.5E-07 2.1E-11 88.3 5.5 39 49-88 1-39 (463)
228 TIGR01316 gltA glutamate synth 98.3 1.4E-06 2.9E-11 86.5 6.5 43 46-88 131-173 (449)
229 PRK06327 dihydrolipoamide dehy 98.3 1E-06 2.3E-11 88.2 5.5 43 47-89 3-51 (475)
230 PRK08294 phenol 2-monooxygenas 98.3 2.2E-06 4.8E-11 88.4 8.0 60 45-121 29-91 (634)
231 COG4716 Myosin-crossreactive a 98.2 6E-06 1.3E-10 75.8 9.5 68 49-117 23-96 (587)
232 PTZ00188 adrenodoxin reductase 98.2 1.7E-06 3.6E-11 84.4 6.3 44 47-90 38-82 (506)
233 PTZ00052 thioredoxin reductase 98.2 1.2E-06 2.7E-11 87.9 5.6 41 48-88 5-53 (499)
234 PF00743 FMO-like: Flavin-bind 98.2 9.9E-07 2.1E-11 88.6 4.8 41 49-89 2-42 (531)
235 PRK14727 putative mercuric red 98.2 1.5E-06 3.3E-11 87.0 5.7 43 47-89 15-57 (479)
236 PRK12778 putative bifunctional 98.2 1.7E-06 3.7E-11 91.4 6.2 43 46-88 429-471 (752)
237 PLN02546 glutathione reductase 98.2 3.5E-06 7.6E-11 85.3 8.0 43 47-89 78-129 (558)
238 PRK13748 putative mercuric red 98.2 1.4E-06 3.1E-11 89.2 5.4 41 47-88 97-137 (561)
239 KOG2415 Electron transfer flav 98.2 1.8E-06 4E-11 80.2 5.3 43 47-89 75-123 (621)
240 PRK10262 thioredoxin reductase 98.2 2.1E-06 4.5E-11 81.5 5.9 43 46-89 4-46 (321)
241 PRK12810 gltD glutamate syntha 98.2 2.5E-06 5.5E-11 85.2 6.6 42 47-88 142-183 (471)
242 KOG2960 Protein involved in th 98.2 5.1E-07 1.1E-11 76.2 1.0 67 48-124 76-146 (328)
243 COG1249 Lpd Pyruvate/2-oxoglut 98.2 2.4E-06 5.2E-11 83.6 5.8 45 46-90 2-46 (454)
244 PRK08641 sdhA succinate dehydr 98.2 2.2E-06 4.7E-11 87.8 5.6 40 47-86 2-41 (589)
245 PTZ00367 squalene epoxidase; P 98.2 2E-06 4.4E-11 87.0 5.3 36 46-81 31-66 (567)
246 PRK12814 putative NADPH-depend 98.2 3E-06 6.5E-11 87.9 6.3 42 47-88 192-233 (652)
247 PRK12809 putative oxidoreducta 98.1 3.3E-06 7.2E-11 87.5 6.6 42 47-88 309-350 (639)
248 PLN02507 glutathione reductase 98.1 2.6E-06 5.6E-11 85.6 5.5 44 46-89 23-75 (499)
249 TIGR01318 gltD_gamma_fam gluta 98.1 3.7E-06 8E-11 83.8 6.4 42 47-88 140-181 (467)
250 PRK11749 dihydropyrimidine deh 98.1 3.6E-06 7.7E-11 83.9 6.3 43 46-88 138-180 (457)
251 PRK06567 putative bifunctional 98.1 2.8E-06 6.1E-11 88.9 5.6 41 46-86 381-421 (1028)
252 TIGR01372 soxA sarcosine oxida 98.1 3.1E-06 6.8E-11 91.7 6.0 43 47-89 162-204 (985)
253 COG0493 GltD NADPH-dependent g 98.1 3.7E-06 8E-11 82.4 5.7 45 45-89 120-164 (457)
254 PRK05335 tRNA (uracil-5-)-meth 98.1 4E-06 8.6E-11 80.5 5.5 36 49-84 3-38 (436)
255 COG1252 Ndh NADH dehydrogenase 98.1 1.9E-05 4.1E-10 75.5 10.1 36 47-82 2-39 (405)
256 TIGR01789 lycopene_cycl lycope 98.1 3.4E-06 7.4E-11 81.4 5.1 37 50-86 1-39 (370)
257 KOG0399 Glutamate synthase [Am 98.1 3.8E-06 8.1E-11 86.7 5.4 44 46-89 1783-1826(2142)
258 KOG2614 Kynurenine 3-monooxyge 98.1 4.2E-06 9.1E-11 78.4 5.0 36 48-83 2-37 (420)
259 TIGR01423 trypano_reduc trypan 98.1 4.3E-06 9.3E-11 83.5 5.3 43 47-89 2-53 (486)
260 PTZ00153 lipoamide dehydrogena 98.0 9.6E-06 2.1E-10 83.3 7.5 42 48-89 116-158 (659)
261 COG0029 NadB Aspartate oxidase 98.0 2.6E-05 5.7E-10 74.8 9.6 54 249-303 134-195 (518)
262 TIGR01317 GOGAT_sm_gam glutama 98.0 8.3E-06 1.8E-10 81.7 6.0 42 47-88 142-183 (485)
263 PRK12771 putative glutamate sy 98.0 9.7E-06 2.1E-10 83.0 6.5 43 46-88 135-177 (564)
264 COG4529 Uncharacterized protei 98.0 6.3E-05 1.4E-09 72.3 11.3 38 48-85 1-41 (474)
265 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 7.4E-06 1.6E-10 79.2 5.1 36 50-85 2-37 (433)
266 COG0445 GidA Flavin-dependent 98.0 1.1E-05 2.3E-10 78.2 6.0 35 46-80 2-36 (621)
267 PRK14989 nitrite reductase sub 98.0 7.3E-05 1.6E-09 79.4 12.1 44 260-304 201-245 (847)
268 PF07992 Pyr_redox_2: Pyridine 97.9 9.8E-06 2.1E-10 71.2 4.6 33 50-82 1-33 (201)
269 PRK12770 putative glutamate sy 97.9 1.6E-05 3.5E-10 76.4 6.5 42 47-88 17-58 (352)
270 PF00070 Pyr_redox: Pyridine n 97.9 2E-05 4.4E-10 57.9 5.1 35 50-84 1-35 (80)
271 TIGR01438 TGR thioredoxin and 97.9 1.2E-05 2.7E-10 80.4 5.3 42 48-89 2-51 (484)
272 KOG0042 Glycerol-3-phosphate d 97.9 4.8E-05 1E-09 73.4 8.7 42 47-88 66-107 (680)
273 KOG1238 Glucose dehydrogenase/ 97.9 0.00017 3.7E-09 71.8 12.8 40 44-83 53-93 (623)
274 KOG2853 Possible oxidoreductas 97.9 1.7E-05 3.8E-10 72.0 5.0 37 47-83 85-125 (509)
275 COG1053 SdhA Succinate dehydro 97.9 1.7E-05 3.6E-10 80.0 5.4 42 46-87 4-45 (562)
276 PRK13984 putative oxidoreducta 97.9 2.3E-05 5E-10 81.0 6.3 43 46-88 281-323 (604)
277 PRK09077 L-aspartate oxidase; 97.8 2.1E-05 4.5E-10 79.9 5.5 39 47-86 7-45 (536)
278 PRK06912 acoL dihydrolipoamide 97.8 2.1E-05 4.5E-10 78.5 5.2 38 50-88 2-39 (458)
279 PRK07845 flavoprotein disulfid 97.8 2.3E-05 5E-10 78.3 5.4 40 49-89 2-41 (466)
280 KOG2852 Possible oxidoreductas 97.8 1.1E-05 2.4E-10 71.6 1.9 43 44-86 6-54 (380)
281 PF13434 K_oxygenase: L-lysine 97.7 0.00011 2.4E-09 69.8 8.5 36 48-83 2-38 (341)
282 KOG1800 Ferredoxin/adrenodoxin 97.7 4.7E-05 1E-09 70.4 5.4 42 48-89 20-63 (468)
283 PRK08255 salicylyl-CoA 5-hydro 97.7 3.3E-05 7.1E-10 81.7 5.1 33 50-82 2-36 (765)
284 TIGR02374 nitri_red_nirB nitri 97.7 0.00021 4.6E-09 75.9 11.0 42 260-303 196-237 (785)
285 TIGR02061 aprA adenosine phosp 97.7 3.8E-05 8.2E-10 78.6 5.1 33 50-82 1-37 (614)
286 KOG1335 Dihydrolipoamide dehyd 97.7 5.9E-05 1.3E-09 69.8 5.0 43 47-89 38-80 (506)
287 PRK09754 phenylpropionate diox 97.6 0.00068 1.5E-08 66.3 11.7 35 48-82 144-178 (396)
288 COG2303 BetA Choline dehydroge 97.6 7.3E-05 1.6E-09 75.7 4.7 37 44-80 3-39 (542)
289 TIGR03377 glycerol3P_GlpA glyc 97.6 0.0062 1.3E-07 61.8 18.6 44 260-304 142-190 (516)
290 PRK13800 putative oxidoreducta 97.5 7.8E-05 1.7E-09 80.3 4.8 36 47-82 12-47 (897)
291 TIGR03452 mycothione_red mycot 97.5 9E-05 2E-09 73.7 4.9 43 260-304 223-265 (452)
292 PRK07846 mycothione reductase; 97.5 9E-05 1.9E-09 73.7 4.7 44 260-305 220-263 (451)
293 PLN02785 Protein HOTHEAD 97.5 0.00014 3E-09 74.3 5.8 35 46-81 53-87 (587)
294 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.0025 5.3E-08 62.7 14.1 42 260-303 228-271 (454)
295 PRK04965 NADH:flavorubredoxin 97.5 0.0015 3.2E-08 63.5 12.1 43 260-304 197-239 (377)
296 TIGR01421 gluta_reduc_1 glutat 97.4 0.0014 2.9E-08 65.3 11.5 34 49-82 167-200 (450)
297 PRK05249 soluble pyridine nucl 97.4 0.0022 4.8E-08 64.1 12.8 43 260-304 230-272 (461)
298 TIGR03862 flavo_PP4765 unchara 97.4 0.0011 2.4E-08 63.5 9.8 62 240-305 77-142 (376)
299 KOG4716 Thioredoxin reductase 97.4 0.00028 6.1E-09 64.3 5.3 58 41-100 12-70 (503)
300 TIGR01350 lipoamide_DH dihydro 97.4 0.0018 3.9E-08 64.8 11.6 35 48-82 170-204 (461)
301 PRK09754 phenylpropionate diox 97.4 0.00026 5.7E-09 69.2 5.5 42 260-304 200-241 (396)
302 PRK13512 coenzyme A disulfide 97.3 0.00028 6E-09 70.0 5.3 36 49-84 2-39 (438)
303 PRK06416 dihydrolipoamide dehy 97.3 0.0024 5.2E-08 63.9 12.0 34 49-82 173-206 (462)
304 PRK09564 coenzyme A disulfide 97.3 0.00029 6.3E-09 70.1 4.9 35 50-84 2-38 (444)
305 KOG0405 Pyridine nucleotide-di 97.2 0.00047 1E-08 63.2 5.1 47 44-90 16-62 (478)
306 PRK07845 flavoprotein disulfid 97.1 0.004 8.7E-08 62.3 11.4 43 260-304 232-274 (466)
307 PLN02507 glutathione reductase 97.1 0.0042 9.1E-08 62.6 11.5 42 260-303 258-299 (499)
308 PTZ00318 NADH dehydrogenase-li 97.1 0.00053 1.2E-08 67.7 4.8 37 46-82 8-44 (424)
309 TIGR01423 trypano_reduc trypan 97.1 0.0045 9.7E-08 62.1 11.4 43 260-303 245-287 (486)
310 TIGR01424 gluta_reduc_2 glutat 97.1 0.0049 1.1E-07 61.3 11.5 42 260-303 221-262 (446)
311 COG0446 HcaD Uncharacterized N 97.0 0.00089 1.9E-08 65.8 5.0 60 48-122 136-195 (415)
312 COG1206 Gid NAD(FAD)-utilizing 96.8 0.0013 2.9E-08 59.8 3.8 36 49-84 4-39 (439)
313 PRK04965 NADH:flavorubredoxin 96.7 0.0026 5.7E-08 61.8 5.5 34 49-82 3-38 (377)
314 COG3486 IucD Lysine/ornithine 96.6 0.022 4.7E-07 53.9 10.3 38 45-82 2-40 (436)
315 KOG0404 Thioredoxin reductase 96.5 0.0048 1E-07 53.2 5.3 44 47-90 7-54 (322)
316 TIGR03169 Nterm_to_SelD pyridi 96.5 0.0027 5.8E-08 61.4 4.1 39 260-304 205-243 (364)
317 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.0032 6.8E-08 52.8 4.0 32 50-81 1-32 (157)
318 COG3634 AhpF Alkyl hydroperoxi 96.5 0.0017 3.6E-08 59.7 2.4 40 47-88 210-249 (520)
319 PRK01438 murD UDP-N-acetylmura 96.4 0.0051 1.1E-07 61.9 5.7 35 48-82 16-50 (480)
320 KOG3855 Monooxygenase involved 96.4 0.0057 1.2E-07 57.7 5.2 36 46-81 34-73 (481)
321 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.005 1.1E-07 52.9 4.4 33 50-82 1-33 (180)
322 KOG3923 D-aspartate oxidase [A 96.3 0.0032 6.9E-08 56.7 3.2 33 47-79 2-41 (342)
323 PF13434 K_oxygenase: L-lysine 96.3 0.076 1.7E-06 50.6 12.5 42 260-302 293-339 (341)
324 PRK02705 murD UDP-N-acetylmura 96.2 0.0057 1.2E-07 61.1 4.5 34 50-83 2-35 (459)
325 KOG2311 NAD/FAD-utilizing prot 96.1 0.0082 1.8E-07 57.6 4.9 35 46-80 26-60 (679)
326 PRK07251 pyridine nucleotide-d 95.9 0.012 2.6E-07 58.5 5.5 37 48-84 157-193 (438)
327 PRK07530 3-hydroxybutyryl-CoA 95.9 0.013 2.8E-07 54.7 5.2 36 46-81 2-37 (292)
328 PRK07066 3-hydroxybutyryl-CoA 95.9 0.013 2.8E-07 55.0 5.2 34 48-81 7-40 (321)
329 PF03721 UDPG_MGDP_dh_N: UDP-g 95.8 0.0088 1.9E-07 51.5 3.6 33 50-82 2-34 (185)
330 PRK05976 dihydrolipoamide dehy 95.8 0.012 2.6E-07 59.1 5.0 35 49-83 181-215 (472)
331 PRK07819 3-hydroxybutyryl-CoA 95.7 0.013 2.8E-07 54.4 4.6 34 49-82 6-39 (286)
332 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.012 2.6E-07 55.4 4.4 33 50-82 4-36 (308)
333 PF02558 ApbA: Ketopantoate re 95.7 0.015 3.3E-07 48.2 4.6 30 51-80 1-30 (151)
334 PRK08293 3-hydroxybutyryl-CoA 95.6 0.017 3.8E-07 53.7 4.8 33 49-81 4-36 (287)
335 TIGR02053 MerA mercuric reduct 95.5 0.018 3.8E-07 57.7 5.1 36 49-84 167-202 (463)
336 PRK05675 sdhA succinate dehydr 95.5 0.067 1.5E-06 54.9 9.0 56 248-304 126-189 (570)
337 PRK06370 mercuric reductase; V 95.5 0.021 4.5E-07 57.2 5.2 38 48-85 171-208 (463)
338 PRK06467 dihydrolipoamide dehy 95.4 0.021 4.6E-07 57.2 5.2 36 49-84 175-210 (471)
339 KOG1336 Monodehydroascorbate/f 95.4 0.24 5.1E-06 48.1 11.7 229 47-310 73-319 (478)
340 PRK07846 mycothione reductase; 95.3 0.023 4.9E-07 56.6 5.0 37 48-84 166-202 (451)
341 PRK06912 acoL dihydrolipoamide 95.3 0.024 5.1E-07 56.7 5.1 36 49-84 171-206 (458)
342 PRK05808 3-hydroxybutyryl-CoA 95.3 0.025 5.5E-07 52.5 4.8 33 49-81 4-36 (282)
343 PRK06115 dihydrolipoamide dehy 95.3 0.025 5.4E-07 56.6 5.1 37 48-84 174-210 (466)
344 PRK13512 coenzyme A disulfide 95.3 0.024 5.1E-07 56.3 4.8 36 49-84 149-184 (438)
345 PRK06292 dihydrolipoamide dehy 95.2 0.03 6.4E-07 56.1 5.5 38 48-85 169-206 (460)
346 PRK09260 3-hydroxybutyryl-CoA 95.2 0.023 5.1E-07 52.9 4.5 33 50-82 3-35 (288)
347 PRK07818 dihydrolipoamide dehy 95.2 0.025 5.5E-07 56.6 5.0 36 49-84 173-208 (466)
348 PRK06249 2-dehydropantoate 2-r 95.2 0.03 6.6E-07 52.8 5.3 34 48-81 5-38 (313)
349 COG0569 TrkA K+ transport syst 95.2 0.027 5.8E-07 50.2 4.5 33 50-82 2-34 (225)
350 cd01080 NAD_bind_m-THF_DH_Cycl 95.2 0.034 7.4E-07 46.9 4.8 35 46-80 42-77 (168)
351 TIGR03385 CoA_CoA_reduc CoA-di 95.2 0.028 6.1E-07 55.6 5.1 36 48-83 137-172 (427)
352 PRK14106 murD UDP-N-acetylmura 95.1 0.028 6.2E-07 56.0 5.1 34 48-81 5-38 (450)
353 PF13738 Pyr_redox_3: Pyridine 95.1 0.025 5.3E-07 49.6 4.0 35 47-81 166-200 (203)
354 PRK05708 2-dehydropantoate 2-r 95.0 0.037 8E-07 52.0 5.1 32 49-80 3-34 (305)
355 PRK06035 3-hydroxyacyl-CoA deh 95.0 0.032 6.9E-07 52.1 4.7 33 49-81 4-36 (291)
356 PLN02545 3-hydroxybutyryl-CoA 95.0 0.038 8.3E-07 51.7 5.1 34 48-81 4-37 (295)
357 PRK06130 3-hydroxybutyryl-CoA 95.0 0.036 7.8E-07 52.3 5.0 34 48-81 4-37 (311)
358 TIGR03452 mycothione_red mycot 95.0 0.037 8E-07 55.2 5.3 37 48-84 169-205 (452)
359 COG0686 Ald Alanine dehydrogen 95.0 0.026 5.7E-07 51.3 3.7 43 48-90 168-218 (371)
360 PRK11064 wecC UDP-N-acetyl-D-m 94.9 0.031 6.6E-07 54.9 4.5 35 48-82 3-37 (415)
361 PF01262 AlaDh_PNT_C: Alanine 94.9 0.04 8.6E-07 46.8 4.7 33 48-80 20-52 (168)
362 PF01488 Shikimate_DH: Shikima 94.9 0.057 1.2E-06 43.9 5.4 34 47-80 11-45 (135)
363 PRK06327 dihydrolipoamide dehy 94.9 0.035 7.6E-07 55.7 5.0 36 49-84 184-219 (475)
364 KOG2304 3-hydroxyacyl-CoA dehy 94.6 0.039 8.5E-07 47.7 3.8 39 45-83 8-46 (298)
365 PRK14618 NAD(P)H-dependent gly 94.6 0.056 1.2E-06 51.4 5.2 33 49-81 5-37 (328)
366 PRK08229 2-dehydropantoate 2-r 94.6 0.052 1.1E-06 51.9 5.0 32 49-80 3-34 (341)
367 PRK09564 coenzyme A disulfide 94.5 0.062 1.3E-06 53.5 5.5 36 48-83 149-184 (444)
368 TIGR02374 nitri_red_nirB nitri 94.5 0.046 1E-06 58.3 4.8 37 48-84 140-176 (785)
369 PRK06522 2-dehydropantoate 2-r 94.5 0.051 1.1E-06 51.0 4.7 31 50-80 2-32 (304)
370 PTZ00058 glutathione reductase 94.5 0.051 1.1E-06 55.4 4.8 37 48-84 237-273 (561)
371 PRK04148 hypothetical protein; 94.5 0.041 8.9E-07 44.2 3.3 33 49-82 18-50 (134)
372 KOG2755 Oxidoreductase [Genera 94.4 0.026 5.6E-07 50.1 2.3 33 51-83 2-36 (334)
373 TIGR01470 cysG_Nterm siroheme 94.4 0.069 1.5E-06 46.8 4.9 34 48-81 9-42 (205)
374 KOG1335 Dihydrolipoamide dehyd 94.4 0.028 6.1E-07 52.6 2.5 89 7-124 183-271 (506)
375 PRK12921 2-dehydropantoate 2-r 94.4 0.058 1.3E-06 50.7 4.8 30 50-79 2-31 (305)
376 PTZ00153 lipoamide dehydrogena 94.4 0.056 1.2E-06 56.1 5.0 37 49-85 313-349 (659)
377 TIGR03140 AhpF alkyl hydropero 94.3 0.054 1.2E-06 55.0 4.7 35 48-82 352-386 (515)
378 PRK14989 nitrite reductase sub 94.2 0.056 1.2E-06 57.9 4.8 37 48-84 145-181 (847)
379 PRK06116 glutathione reductase 94.1 0.069 1.5E-06 53.3 5.0 36 48-83 167-202 (450)
380 cd05292 LDH_2 A subgroup of L- 94.1 0.072 1.6E-06 50.0 4.8 32 50-81 2-35 (308)
381 TIGR01763 MalateDH_bact malate 94.1 0.085 1.8E-06 49.4 5.2 33 49-81 2-35 (305)
382 PRK10262 thioredoxin reductase 94.0 0.081 1.7E-06 50.1 5.0 35 48-82 146-180 (321)
383 TIGR01316 gltA glutamate synth 94.0 0.081 1.8E-06 52.7 5.2 34 48-81 272-305 (449)
384 PF13241 NAD_binding_7: Putati 94.0 0.048 1.1E-06 42.0 2.8 34 47-80 6-39 (103)
385 PRK08010 pyridine nucleotide-d 94.0 0.084 1.8E-06 52.5 5.3 36 49-84 159-194 (441)
386 COG1004 Ugd Predicted UDP-gluc 93.9 0.072 1.6E-06 50.4 4.3 31 50-80 2-32 (414)
387 TIGR00518 alaDH alanine dehydr 93.9 0.086 1.9E-06 50.8 5.0 34 47-80 166-199 (370)
388 PRK01710 murD UDP-N-acetylmura 93.9 0.077 1.7E-06 53.0 4.8 33 49-81 15-47 (458)
389 TIGR03143 AhpF_homolog putativ 93.8 0.07 1.5E-06 54.7 4.5 36 48-83 143-178 (555)
390 PRK12770 putative glutamate sy 93.8 0.091 2E-06 50.5 5.0 34 48-81 172-206 (352)
391 cd00401 AdoHcyase S-adenosyl-L 93.8 0.11 2.5E-06 50.4 5.6 74 8-81 160-235 (413)
392 PLN02572 UDP-sulfoquinovose sy 93.7 0.15 3.2E-06 50.7 6.4 33 48-80 47-80 (442)
393 PLN02546 glutathione reductase 93.7 0.088 1.9E-06 53.7 4.9 37 48-84 252-288 (558)
394 PRK12831 putative oxidoreducta 93.7 0.098 2.1E-06 52.3 5.1 35 47-81 280-314 (464)
395 PRK06718 precorrin-2 dehydroge 93.7 0.12 2.6E-06 45.2 5.0 34 47-80 9-42 (202)
396 PRK08268 3-hydroxy-acyl-CoA de 93.7 0.11 2.4E-06 52.4 5.4 35 48-82 7-41 (507)
397 KOG3851 Sulfide:quinone oxidor 93.7 0.067 1.5E-06 48.9 3.4 35 46-80 37-73 (446)
398 PRK15317 alkyl hydroperoxide r 93.7 0.091 2E-06 53.4 4.9 35 48-82 351-385 (517)
399 PRK00094 gpsA NAD(P)H-dependen 93.6 0.1 2.2E-06 49.5 4.9 32 50-81 3-34 (325)
400 COG1748 LYS9 Saccharopine dehy 93.6 0.1 2.2E-06 50.0 4.8 32 49-80 2-34 (389)
401 PRK14694 putative mercuric red 93.6 0.1 2.3E-06 52.3 5.1 32 49-80 179-210 (468)
402 PRK04690 murD UDP-N-acetylmura 93.6 0.091 2E-06 52.6 4.6 34 48-81 8-41 (468)
403 TIGR03026 NDP-sugDHase nucleot 93.5 0.083 1.8E-06 51.9 4.2 33 50-82 2-34 (411)
404 TIGR02354 thiF_fam2 thiamine b 93.5 0.13 2.7E-06 45.0 4.8 34 47-80 20-54 (200)
405 TIGR01438 TGR thioredoxin and 93.5 0.11 2.5E-06 52.1 5.1 32 49-80 181-212 (484)
406 PRK14619 NAD(P)H-dependent gly 93.4 0.13 2.8E-06 48.5 5.2 33 49-81 5-37 (308)
407 PRK07531 bifunctional 3-hydrox 93.4 0.11 2.3E-06 52.4 4.9 32 50-81 6-37 (495)
408 PRK13748 putative mercuric red 93.4 0.1 2.3E-06 53.6 5.0 34 48-81 270-303 (561)
409 TIGR01292 TRX_reduct thioredox 93.4 0.12 2.5E-06 48.3 4.8 34 48-81 141-174 (300)
410 PTZ00052 thioredoxin reductase 93.3 0.12 2.5E-06 52.3 5.0 32 49-80 183-214 (499)
411 PF03446 NAD_binding_2: NAD bi 93.3 0.12 2.6E-06 43.6 4.3 33 49-81 2-34 (163)
412 PRK14727 putative mercuric red 93.3 0.12 2.7E-06 51.9 5.1 32 49-80 189-220 (479)
413 PRK06719 precorrin-2 dehydroge 93.3 0.16 3.4E-06 42.5 4.9 32 47-78 12-43 (157)
414 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.2 0.12 2.7E-06 51.9 5.0 34 49-82 6-39 (503)
415 PRK03369 murD UDP-N-acetylmura 93.2 0.12 2.6E-06 52.0 4.9 33 48-80 12-44 (488)
416 PRK14620 NAD(P)H-dependent gly 93.2 0.12 2.7E-06 49.0 4.7 32 50-81 2-33 (326)
417 COG0771 MurD UDP-N-acetylmuram 93.1 0.11 2.4E-06 50.8 4.3 36 48-83 7-42 (448)
418 COG1252 Ndh NADH dehydrogenase 93.1 0.079 1.7E-06 51.1 3.2 61 48-124 155-228 (405)
419 PRK09424 pntA NAD(P) transhydr 93.1 0.1 2.3E-06 52.1 4.2 34 47-80 164-197 (509)
420 PRK04308 murD UDP-N-acetylmura 93.0 0.15 3.3E-06 50.7 5.3 36 48-83 5-40 (445)
421 PRK02472 murD UDP-N-acetylmura 93.0 0.13 2.8E-06 51.2 4.8 34 48-81 5-38 (447)
422 PTZ00082 L-lactate dehydrogena 93.0 0.18 3.8E-06 47.7 5.3 35 48-82 6-41 (321)
423 PRK00421 murC UDP-N-acetylmura 92.9 0.13 2.7E-06 51.5 4.5 35 48-82 7-42 (461)
424 COG1250 FadB 3-hydroxyacyl-CoA 92.8 0.15 3.2E-06 47.3 4.5 33 48-80 3-35 (307)
425 PRK11730 fadB multifunctional 92.7 0.16 3.4E-06 53.7 5.1 35 48-82 313-347 (715)
426 cd05311 NAD_bind_2_malic_enz N 92.7 0.19 4.1E-06 44.8 4.9 35 47-81 24-61 (226)
427 PRK07417 arogenate dehydrogena 92.7 0.15 3.2E-06 47.3 4.4 32 50-81 2-33 (279)
428 PLN02353 probable UDP-glucose 92.7 0.15 3.2E-06 50.8 4.5 32 49-80 2-35 (473)
429 COG1251 NirB NAD(P)H-nitrite r 92.6 0.29 6.3E-06 50.1 6.4 42 260-303 201-242 (793)
430 PRK06223 malate dehydrogenase; 92.5 0.19 4.1E-06 47.3 4.9 34 49-82 3-37 (307)
431 PRK08306 dipicolinate synthase 92.4 0.21 4.4E-06 46.7 5.0 35 47-81 151-185 (296)
432 cd01075 NAD_bind_Leu_Phe_Val_D 92.4 0.25 5.4E-06 43.1 5.2 35 47-81 27-61 (200)
433 TIGR02437 FadB fatty oxidation 92.4 0.18 3.9E-06 53.1 5.1 36 47-82 312-347 (714)
434 PLN00016 RNA-binding protein; 92.3 0.17 3.6E-06 49.3 4.3 35 48-82 52-91 (378)
435 PRK12549 shikimate 5-dehydroge 92.2 0.21 4.6E-06 46.2 4.8 34 48-81 127-161 (284)
436 PRK00141 murD UDP-N-acetylmura 92.2 0.19 4.2E-06 50.4 4.8 32 49-80 16-47 (473)
437 PRK11749 dihydropyrimidine deh 92.2 0.23 5.1E-06 49.6 5.3 34 47-80 272-306 (457)
438 PRK01368 murD UDP-N-acetylmura 92.1 0.18 3.9E-06 50.2 4.5 32 48-80 6-37 (454)
439 PRK15057 UDP-glucose 6-dehydro 92.1 0.21 4.5E-06 48.6 4.7 31 50-81 2-32 (388)
440 PRK00683 murD UDP-N-acetylmura 92.1 0.19 4.2E-06 49.5 4.6 33 49-81 4-36 (418)
441 PTZ00318 NADH dehydrogenase-li 92.1 0.2 4.4E-06 49.4 4.8 35 49-83 174-222 (424)
442 TIGR02441 fa_ox_alpha_mit fatt 92.0 0.19 4.2E-06 53.0 4.7 36 47-82 334-369 (737)
443 PF00056 Ldh_1_N: lactate/mala 92.0 0.28 6.1E-06 40.1 4.8 31 50-80 2-35 (141)
444 cd05191 NAD_bind_amino_acid_DH 92.0 0.37 8.1E-06 35.6 5.0 33 47-79 22-55 (86)
445 cd05291 HicDH_like L-2-hydroxy 91.9 0.24 5.1E-06 46.6 4.7 33 50-82 2-36 (306)
446 PRK14573 bifunctional D-alanyl 91.9 0.2 4.3E-06 53.9 4.7 36 46-81 2-38 (809)
447 COG3634 AhpF Alkyl hydroperoxi 91.8 0.17 3.6E-06 47.0 3.4 38 42-79 348-385 (520)
448 PRK12778 putative bifunctional 91.7 0.27 5.9E-06 52.4 5.4 34 48-81 570-604 (752)
449 PF00070 Pyr_redox: Pyridine n 91.7 0.24 5.3E-06 35.9 3.6 27 260-287 54-80 (80)
450 cd05293 LDH_1 A subgroup of L- 91.7 0.3 6.5E-06 45.9 5.1 34 48-81 3-38 (312)
451 PF00899 ThiF: ThiF family; I 91.7 0.26 5.7E-06 39.9 4.2 33 48-80 2-35 (135)
452 PRK02006 murD UDP-N-acetylmura 91.6 0.23 5E-06 50.2 4.7 34 48-81 7-40 (498)
453 TIGR02440 FadJ fatty oxidation 91.6 0.24 5.2E-06 52.1 4.8 35 47-81 303-338 (699)
454 TIGR02853 spore_dpaA dipicolin 91.6 0.28 6.1E-06 45.5 4.8 34 48-81 151-184 (287)
455 TIGR01505 tartro_sem_red 2-hyd 91.6 0.23 5E-06 46.3 4.2 32 50-81 1-32 (291)
456 PF02254 TrkA_N: TrkA-N domain 91.5 0.33 7.1E-06 38.1 4.6 32 51-82 1-32 (116)
457 TIGR01915 npdG NADPH-dependent 91.5 0.28 6E-06 43.6 4.5 32 50-81 2-34 (219)
458 TIGR00561 pntA NAD(P) transhyd 91.5 0.26 5.5E-06 49.2 4.6 34 48-81 164-197 (511)
459 TIGR00936 ahcY adenosylhomocys 91.4 0.29 6.4E-06 47.4 4.9 74 8-81 153-228 (406)
460 COG1893 ApbA Ketopantoate redu 91.3 0.23 5.1E-06 46.5 3.9 33 50-82 2-34 (307)
461 cd01339 LDH-like_MDH L-lactate 91.3 0.25 5.4E-06 46.3 4.2 31 51-81 1-32 (300)
462 PRK11154 fadJ multifunctional 91.2 0.3 6.4E-06 51.6 5.0 35 47-81 308-343 (708)
463 PRK07688 thiamine/molybdopteri 90.9 0.38 8.2E-06 45.8 5.0 34 47-80 23-57 (339)
464 PTZ00117 malate dehydrogenase; 90.9 0.39 8.5E-06 45.3 5.1 34 48-81 5-39 (319)
465 PRK15461 NADH-dependent gamma- 90.9 0.32 6.9E-06 45.5 4.4 32 50-81 3-34 (296)
466 PRK01390 murD UDP-N-acetylmura 90.8 0.29 6.2E-06 49.0 4.4 32 49-80 10-41 (460)
467 PRK03803 murD UDP-N-acetylmura 90.8 0.37 8.1E-06 48.0 5.1 34 48-81 6-39 (448)
468 PRK11199 tyrA bifunctional cho 90.7 0.36 7.7E-06 46.7 4.8 35 47-81 97-132 (374)
469 PRK12475 thiamine/molybdopteri 90.7 0.38 8.3E-06 45.7 4.9 35 47-81 23-58 (338)
470 PRK00066 ldh L-lactate dehydro 90.7 0.43 9.2E-06 45.0 5.1 34 48-81 6-41 (315)
471 TIGR00507 aroE shikimate 5-deh 90.6 0.4 8.6E-06 44.2 4.8 33 48-80 117-149 (270)
472 cd01487 E1_ThiF_like E1_ThiF_l 90.6 0.48 1E-05 40.3 4.9 31 50-80 1-32 (174)
473 cd01078 NAD_bind_H4MPT_DH NADP 90.6 0.44 9.6E-06 41.4 4.8 34 47-80 27-61 (194)
474 PRK12548 shikimate 5-dehydroge 90.6 0.48 1E-05 44.1 5.3 34 48-81 126-160 (289)
475 cd01065 NAD_bind_Shikimate_DH 90.5 0.5 1.1E-05 39.2 5.0 34 48-81 19-53 (155)
476 PRK03806 murD UDP-N-acetylmura 90.5 0.38 8.3E-06 47.7 4.9 34 48-81 6-39 (438)
477 cd05290 LDH_3 A subgroup of L- 90.4 0.41 8.9E-06 44.8 4.7 31 50-80 1-33 (307)
478 PTZ00142 6-phosphogluconate de 90.3 0.34 7.5E-06 48.2 4.3 34 49-82 2-35 (470)
479 PLN02657 3,8-divinyl protochlo 90.3 0.8 1.7E-05 44.7 6.8 38 44-81 56-94 (390)
480 COG2072 TrkA Predicted flavopr 90.2 0.43 9.4E-06 47.3 5.0 36 47-82 174-209 (443)
481 PRK15116 sulfur acceptor prote 90.2 0.47 1E-05 43.3 4.7 36 47-82 29-65 (268)
482 PLN02172 flavin-containing mon 90.1 0.33 7.2E-06 48.4 4.1 35 47-81 203-237 (461)
483 PRK07502 cyclohexadienyl dehyd 90.0 0.47 1E-05 44.6 4.8 33 49-81 7-41 (307)
484 PRK11559 garR tartronate semia 89.9 0.48 1E-05 44.3 4.8 33 49-81 3-35 (296)
485 PRK08644 thiamine biosynthesis 89.8 0.63 1.4E-05 41.1 5.1 34 47-80 27-61 (212)
486 PF00670 AdoHcyase_NAD: S-aden 89.7 0.47 1E-05 39.5 3.9 35 47-81 22-56 (162)
487 PLN02602 lactate dehydrogenase 89.6 0.68 1.5E-05 44.2 5.5 33 49-81 38-72 (350)
488 TIGR02356 adenyl_thiF thiazole 89.6 0.64 1.4E-05 40.7 5.0 34 47-80 20-54 (202)
489 PLN02494 adenosylhomocysteinas 89.5 0.56 1.2E-05 46.1 5.0 36 46-81 252-287 (477)
490 PRK05866 short chain dehydroge 89.5 0.69 1.5E-05 43.1 5.5 36 46-81 38-74 (293)
491 TIGR02355 moeB molybdopterin s 89.5 0.59 1.3E-05 42.1 4.8 34 47-80 23-57 (240)
492 PRK12779 putative bifunctional 89.5 0.48 1E-05 51.6 4.9 34 48-81 447-480 (944)
493 PRK05476 S-adenosyl-L-homocyst 89.4 0.54 1.2E-05 45.9 4.8 35 47-81 211-245 (425)
494 PRK00258 aroE shikimate 5-dehy 89.3 0.6 1.3E-05 43.2 4.9 33 48-80 123-156 (278)
495 PLN02712 arogenate dehydrogena 89.2 1.1 2.3E-05 46.9 7.0 33 48-80 52-84 (667)
496 PRK12439 NAD(P)H-dependent gly 89.2 0.75 1.6E-05 44.0 5.6 32 48-80 7-38 (341)
497 cd01483 E1_enzyme_family Super 89.1 0.67 1.5E-05 37.9 4.6 31 50-80 1-32 (143)
498 PF13478 XdhC_C: XdhC Rossmann 89.1 0.41 8.8E-06 38.9 3.1 30 51-80 1-30 (136)
499 TIGR01087 murD UDP-N-acetylmur 89.0 0.5 1.1E-05 46.8 4.4 33 50-82 1-33 (433)
500 PRK05690 molybdopterin biosynt 89.0 0.66 1.4E-05 41.9 4.8 34 47-80 31-65 (245)
No 1
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=8.2e-39 Score=304.95 Aligned_cols=378 Identities=22% Similarity=0.313 Sum_probs=284.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee--
Q 042352 50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF-- 125 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~-- 125 (445)
.|+|||||++||+|||+|+|++ .+|+|||+.+++||.++|+..+|+.+|.|+|.|....+.+.++++++|++....
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~~ 81 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLWN 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhccC
Confidence 6999999999999999999999 999999999999999999999999999999988766678899999999975543
Q ss_pred -cCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHH
Q 042352 126 -YSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSII 204 (445)
Q Consensus 126 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~ 204 (445)
....+++.+|++++++.+.-..+.. ....+..... ..+..+. ....+...++.++++|+++ .++++++
T Consensus 82 ~~~~~~i~~~gkl~p~P~~~i~~ip~--------~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~sv~~f~r~-~fG~ev~ 150 (444)
T COG1232 82 STARKYIYYDGKLHPIPTPTILGIPL--------LLLSSEAGLA-RALQEFI-RPKSWEPKQDISVGEFIRR-RFGEEVV 150 (444)
T ss_pred CcccceEeeCCcEEECCccceeecCC--------ccccchhHHH-HHHHhhh-cccCCCCCCCcCHHHHHHH-HHhHHHH
Confidence 3334688999999987654211110 0000000000 0001111 1111233568899999987 5999999
Q ss_pred HHhhhhhhcccccCCccchHHHHHH-HHHH-----------Hhh---------cCCCccccCccccHHHHHHhcCCCCcE
Q 042352 205 DSFFRPFFGGIFFDKELETSSRLFD-FIFK-----------CLA---------LGDNTIPANGICQIPNQIASKLPFESI 263 (445)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~---------~g~~~~~~gG~~~l~~~l~~~l~g~~i 263 (445)
+.++.|++.+.|+++.+++|+.... .... ... .+...++.||+++++++|++.+ ..+|
T Consensus 151 ~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l-~~~i 229 (444)
T COG1232 151 ERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKL-EAKI 229 (444)
T ss_pred HHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHh-hhce
Confidence 9999999999999999999887221 1110 000 1235678999999999999999 4569
Q ss_pred EeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCCCCC--CC
Q 042352 264 LLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKDEIP--VQ 338 (445)
Q Consensus 264 ~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~~~~--~~ 338 (445)
++|++|++|.++.++ +.+.+.+|+++.+| .||+|+|++.+.+++++.. ...++.+.+..++.++++++..+ .+
T Consensus 230 ~~~~~V~~i~~~~~~-~~~~~~~g~~~~~D-~VI~t~p~~~l~~ll~~~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~ 307 (444)
T COG1232 230 RTGTEVTKIDKKGAG-KTIVDVGGEKITAD-GVISTAPLPELARLLGDEAVSKAAKELQYTSVVTVVVGLDEKDNPALPD 307 (444)
T ss_pred eecceeeEEEEcCCc-cEEEEcCCceEEcc-eEEEcCCHHHHHHHcCCcchhhhhhhccccceEEEEEEeccccccCCCC
Confidence 999999999999544 77888889889998 7999999999999999943 45678888999999999886322 23
Q ss_pred CCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCCC----CCCCChHHHHHHHHHHHhHhCCCcCCCceEeeE
Q 042352 339 EPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLF----ADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRT 414 (445)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~----~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~ 414 (445)
..++.+++.... +..++|+|++.|...|+|++++.+.+.... ..+++||+++.++++|.++++....+.| ..+
T Consensus 308 ~~g~~iad~~~~-~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~~~~--~~v 384 (444)
T COG1232 308 GYGLLIADDDPY-ILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPVF--VEV 384 (444)
T ss_pred ceEEEEecCCCc-ceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcchhh--eee
Confidence 334444554322 889999999999999999999998875442 3467999999999999999998776665 467
Q ss_pred eecCCCCCCCCCCCCCC----CCCcccCCCCeee
Q 042352 415 YRVRFAQPNQSPPTDLI----KNPKSEFSLAVYL 444 (445)
Q Consensus 415 ~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~ 444 (445)
+|+.+++|...+|.... |....+..||+++
T Consensus 385 ~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~ 418 (444)
T COG1232 385 TRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKS 418 (444)
T ss_pred eeccccCCccchhHHHHHHHHHHhhccccCCeEE
Confidence 88889999999988533 4343333466654
No 2
>PLN02612 phytoene desaturase
Probab=100.00 E-value=9.5e-38 Score=314.55 Aligned_cols=394 Identities=18% Similarity=0.272 Sum_probs=272.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-cCCeeecccccchhccChhHHHhhcccCCccee-
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK- 124 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~- 124 (445)
...||+|||||++||+||++|+++|++|+|+|+++++||++.++. .+|+.+|.|.|++.+.++++.++++++|+....
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~ 171 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQ 171 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccce
Confidence 457999999999999999999999999999999999999999986 478999999999999999999999999985432
Q ss_pred ecCCcEEE-e---CCeeEe--ccCCccchHHHHHhhc--CCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHH
Q 042352 125 FYSGAKVY-Y---NGQFHT--VADPFRHFWDSIKSLA--NPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRN 196 (445)
Q Consensus 125 ~~~~~~~~-~---~g~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 196 (445)
......++ . .+.+.. +++..+.+++....+. .+...+.+++................+..+++.|+.+|+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~ 251 (567)
T PLN02612 172 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRK 251 (567)
T ss_pred ecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHh
Confidence 12222221 2 133332 2221333333333322 23345566655433221111111222345678999999999
Q ss_pred cCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHh-h--cC-CCccccCcc-ccHHHHHHhcCC--CCcEEeCcee
Q 042352 197 IGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL-A--LG-DNTIPANGI-CQIPNQIASKLP--FESILLNTRV 269 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~g-~~~~~~gG~-~~l~~~l~~~l~--g~~i~~n~~V 269 (445)
.++++.+.+.++.+++.+++..++.+.+.......+..+ . .+ ...++.|+. ..+.++|++.+. |++|++|++|
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V 331 (567)
T PLN02612 252 QGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRI 331 (567)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCee
Confidence 999999888899999988888887777765443322222 1 11 234555554 567777777653 9999999999
Q ss_pred eEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhHHhhhcCCC----c---ccCCCCCcceEEEEEeecCCCCCCCCCe
Q 042352 270 LSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPEADKLLRQP----V---KFQRKPARSTVCLYFSADKDEIPVQEPV 341 (445)
Q Consensus 270 ~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p----~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 341 (445)
++|+.++++ +++|++.+|+++++| +||+|+|++.+.+|+++. + .+.+..+.+++++++.|+++++....+.
T Consensus 332 ~~I~~~~~g~v~~v~~~~G~~~~ad-~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~ 410 (567)
T PLN02612 332 KKIELNDDGTVKHFLLTNGSVVEGD-VYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHL 410 (567)
T ss_pred eEEEECCCCcEEEEEECCCcEEECC-EEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCce
Confidence 999987555 456888889889998 799999999998888762 1 2345678889999999999974222233
Q ss_pred EEecCCCCcceEEEEe-ecccCCCCCCCCceEEEEEec--CCCCCCCChHHHHHHHHHHHhHhCCCcCC-----CceEee
Q 042352 342 LFLNGSGKGIVNNMFF-ATNVAPLYGPLDKALISVSLI--GLFADVMDDNLTAEVIRELSDWFGKSTVG-----SWRHLR 413 (445)
Q Consensus 342 ~~~~~~~~~~~~~~~~-~s~~~p~~~p~g~~~l~~~~~--~~~~~~~~~e~~~~~~~~l~~~~~~~~~~-----~~~~~~ 413 (445)
+ +.... .. ...+ .|...+.+.+++++++.+.+. ..|.+++++++++.++++|+++||..... ......
T Consensus 411 ~-~~~~~--~~-~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~ 486 (567)
T PLN02612 411 L-FSRSP--LL-SVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYH 486 (567)
T ss_pred e-ecCCC--Cc-eeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEE
Confidence 2 22221 11 1111 133334556667777665543 24677899999999999999999975321 122233
Q ss_pred EeecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352 414 TYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC 445 (445)
Q Consensus 414 ~~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~ 445 (445)
..+.+++.+...||....||..+||++|||+|
T Consensus 487 ~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lA 518 (567)
T PLN02612 487 VVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLA 518 (567)
T ss_pred EeccCCceEEeCCCCcccCccccCccCCEEEe
Confidence 45566666677888888899999999999997
No 3
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=308.34 Aligned_cols=381 Identities=22% Similarity=0.269 Sum_probs=275.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcce--eecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQ--KFYS 127 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~--~~~~ 127 (445)
+|+|||||++||+||++|+++|++|+|+|+++++||++.++..+|+.+|.|+|++...++.+.++++++|+... ....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~ 80 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRET 80 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCceeeccC
Confidence 59999999999999999999999999999999999999999999999999999998888999999999998533 2233
Q ss_pred CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHHh
Q 042352 128 GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSF 207 (445)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ 207 (445)
...++++|....+.+ +... +..+.....++.......+... ........++.++.+|+++. .+++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l~~~-~~~~~~~~~ 150 (434)
T PRK07233 81 KTGYYVDGKLYPLGT----PLEL---LRFPHLSLIDKFRLGLLTLLAR--RIKDWRALDKVPAEEWLRRW-SGEGVYEVF 150 (434)
T ss_pred ceEEEECCeEecCCC----HHHH---HcCCCCCHHHHHHhHHHHHhhh--hcccccccccccHHHHHHHh-cCHHHHHHH
Confidence 344556665443322 1111 1112223334443322222111 01112345678999999885 577888899
Q ss_pred hhhhhcccccCCccchHHHHHHHHHHHh--h-----cCCCccccCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCC
Q 042352 208 FRPFFGGIFFDKELETSSRLFDFIFKCL--A-----LGDNTIPANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQN 278 (445)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~g~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~ 278 (445)
+++++...|+.++.++++......+... . .....+|.||++.++++|.+.++ |++|++|++|++|+.++++
T Consensus 151 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~ 230 (434)
T PRK07233 151 WEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGG 230 (434)
T ss_pred HHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCc
Confidence 9999999999888888775432222111 1 12367899999999999999885 8899999999999988766
Q ss_pred cCeEEeCCCceEEeccEEEEcCChhHHhhhcCC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceE
Q 042352 279 MPNVRLANGETLKSEIGVILAVEEPEADKLLRQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVN 353 (445)
Q Consensus 279 ~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (445)
++.+. .+|++++++ +||+|+|+..+.+|+++ +. ....+.+.+..++++.++++..+ ..++...+. ...+.
T Consensus 231 ~~~~~-~~~~~~~ad-~vI~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~-~~~~~ 305 (434)
T PRK07233 231 VTGVE-VDGEEEDFD-AVISTAPPPILARLVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTD--YYWLNINDP-GAPFG 305 (434)
T ss_pred eEEEE-eCCceEECC-EEEECCCHHHHHhhcCCCcHHHHhhhcccCccceEEEEEEecCCCCC--CceeeecCC-CCCcc
Confidence 43344 567789998 79999999999999866 22 34567788999999999987522 222222221 12345
Q ss_pred EEEeecccCCCCCCCCceEEEEE--ecCC--CCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCC
Q 042352 354 NMFFATNVAPLYGPLDKALISVS--LIGL--FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTD 429 (445)
Q Consensus 354 ~~~~~s~~~p~~~p~g~~~l~~~--~~~~--~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 429 (445)
.+++.++.+|...|+|++++.+. .... ...++++++++.++++|++++|+.....+......+.+++.+.+.||..
T Consensus 306 ~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~ 385 (434)
T PRK07233 306 GVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYL 385 (434)
T ss_pred eEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchh
Confidence 56667777887777777765332 2221 2356789999999999999999764444555667788899999989877
Q ss_pred CCCCCcccCCCCeeeC
Q 042352 430 LIKNPKSEFSLAVYLC 445 (445)
Q Consensus 430 ~~~~~~~t~~~g~~~~ 445 (445)
..+|...++++|||+|
T Consensus 386 ~~~~~~~~~~~~l~~a 401 (434)
T PRK07233 386 DKIPPYDTPIEGLYLA 401 (434)
T ss_pred hcCCCcccCcCCEEEe
Confidence 7778888899999997
No 4
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=8.9e-38 Score=311.59 Aligned_cols=380 Identities=22% Similarity=0.317 Sum_probs=277.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQ 123 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 123 (445)
+.||+|||||++||+||+.|+++ |++|+|+|+++++||+++|.+.+|+.+|.|+|++...++.+.++++++|+...
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV 81 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCcc
Confidence 36899999999999999999999 99999999999999999999999999999999999988889999999998643
Q ss_pred ee---cCCcEEEeC-CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCC
Q 042352 124 KF---YSGAKVYYN-GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGF 199 (445)
Q Consensus 124 ~~---~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 199 (445)
.. .....++.+ |+...++.. .. ..+......+.+++...+..+.. . ....+.|+.+|+++. +
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~p~~---~~---~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~d~s~~e~l~~~-~ 147 (462)
T TIGR00562 82 LVSDATGQRYVLVNRGKLMPVPTK---IA---PFVKTGLFSLGGKLRAGMDFIRP---A----SPGKDESVEEFVRRR-F 147 (462)
T ss_pred cccCCCCceEEEECCCceecCCCC---hH---HHhcCCCCCchhhHHhhhhhccC---C----CCCCCcCHHHHHHHh-c
Confidence 32 222344555 666655422 11 11222233334444333211110 0 122358999999874 8
Q ss_pred CHHHHHHhhhhhhcccccCCccchHHHHHH-----HH------H-HHh-h---------------cCC-CccccCccccH
Q 042352 200 SDSIIDSFFRPFFGGIFFDKELETSSRLFD-----FI------F-KCL-A---------------LGD-NTIPANGICQI 250 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~-~~~-~---------------~g~-~~~~~gG~~~l 250 (445)
++++.+.++.|++.+.|+.++.++++.... .. . ... . .+. ...+.||++.|
T Consensus 148 g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l 227 (462)
T TIGR00562 148 GDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETL 227 (462)
T ss_pred CHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHH
Confidence 899999999999999999988877765211 10 0 000 0 111 45689999999
Q ss_pred HHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC-Cc----ccCCCCCcceEE
Q 042352 251 PNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ-PV----KFQRKPARSTVC 325 (445)
Q Consensus 251 ~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~-p~----~~~~~~~~~~~~ 325 (445)
+++|++.+..++|++|++|++|+.++++ +.|++++|+++++| +||+|+|+..+.+|+++ |. .+..+.+.++.+
T Consensus 228 ~~~l~~~l~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad-~VI~t~P~~~~~~ll~~~~~~~~~~l~~l~~~~~~~ 305 (462)
T TIGR00562 228 PEEIEKRLKLTKVYKGTKVTKLSHRGSN-YTLELDNGVTVETD-SVVVTAPHKAAAGLLSELSNSASSHLDKIHSPPVAN 305 (462)
T ss_pred HHHHHHHhccCeEEcCCeEEEEEecCCc-EEEEECCCcEEEcC-EEEECCCHHHHHHHhcccCHHHHHHHhcCCCCceEE
Confidence 9999999854799999999999988765 67888888889998 79999999999999977 33 466788999999
Q ss_pred EEEeecCCCCCCC-CCeEEecCCC-CcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHh
Q 042352 326 LYFSADKDEIPVQ-EPVLFLNGSG-KGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSD 399 (445)
Q Consensus 326 v~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~ 399 (445)
+.+.|+++++... ..+.++.... ...+..+++.|+..|..+|+|..++.+++.+. +.+++++++++.++++|++
T Consensus 306 v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~ 385 (462)
T TIGR00562 306 VNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKK 385 (462)
T ss_pred EEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHH
Confidence 9999987754321 2333443332 22456788888888988998988887776543 3457899999999999999
Q ss_pred HhCCCcCCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352 400 WFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC 445 (445)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~ 445 (445)
+++.... .....++|+.++.|.+.+|.... ++...++-||||+|
T Consensus 386 ~~gi~~~--p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~ 433 (462)
T TIGR00562 386 VLNINNE--PEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLT 433 (462)
T ss_pred HhCCCCC--CcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEe
Confidence 9986432 33356788889999999987432 22222345799986
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=2.2e-37 Score=308.17 Aligned_cols=384 Identities=22% Similarity=0.297 Sum_probs=274.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee--
Q 042352 50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF-- 125 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~-- 125 (445)
+|+|||||++||+||+.|+++| ++|+|+|+++++||++++.+.+|+.+|.|+|++...++.+.++++++|+.....
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~ 81 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDELVAN 81 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccceecC
Confidence 6999999999999999999987 899999999999999999999999999999988887888999999999864322
Q ss_pred -cCCcEEEeCCeeEeccCCc--cchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHH
Q 042352 126 -YSGAKVYYNGQFHTVADPF--RHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDS 202 (445)
Q Consensus 126 -~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 202 (445)
.....++.+|++..++... ..+......+........+++...... ........++.|+.+|+++ .+++.
T Consensus 82 ~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~l~~-~~~~~ 154 (451)
T PRK11883 82 TTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADL------RPPRWKPGQDQSVGAFFRR-RFGDE 154 (451)
T ss_pred CCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHHHHH-hccHH
Confidence 2334666778776654321 001111111112222222222211110 0011122457899999986 58899
Q ss_pred HHHHhhhhhhcccccCCccchHHHHHHH-HH----------HH----h------hcCCCccccCccccHHHHHHhcCCCC
Q 042352 203 IIDSFFRPFFGGIFFDKELETSSRLFDF-IF----------KC----L------ALGDNTIPANGICQIPNQIASKLPFE 261 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~----~------~~g~~~~~~gG~~~l~~~l~~~l~g~ 261 (445)
..+.++.|++.++|+.++.++++..... +. .. . ....++++.||++.++++|++.++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~ 234 (451)
T PRK11883 155 VVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG 234 (451)
T ss_pred HHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC
Confidence 9999999999999999888877643210 00 00 0 01234578999999999999998522
Q ss_pred cEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCCCCC-C
Q 042352 262 SILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKDEIP-V 337 (445)
Q Consensus 262 ~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~~~~-~ 337 (445)
+|++|++|++|+.++++ +.|.+.+|+++.+| +||+|+|+..+.+++.+|. ......+.+..++++.|++++.. .
T Consensus 235 ~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d-~vI~a~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~ 312 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDG-YEIVLSNGGEIEAD-AVIVAVPHPVLPSLFVAPPAFALFKTIPSTSVATVALAFPESATNLP 312 (451)
T ss_pred eEEeCCEEEEEEEcCCe-EEEEECCCCEEEcC-EEEECCCHHHHHHhccChhHHHHHhCCCCCceEEEEEEeccccCCCC
Confidence 89999999999988765 67888899889998 7999999999999887754 45667888999999999988422 2
Q ss_pred CCCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCcCCCceEee
Q 042352 338 QEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLR 413 (445)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~ 413 (445)
..+.++++......+..+.+++...|..+|+|..++..++... ..+++++++++.++++|++++|... ...+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~--~~~~~~ 390 (451)
T PRK11883 313 DGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITG--DPEFTI 390 (451)
T ss_pred CceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCC--CceEEE
Confidence 2233444433333466777888888888888887777655321 3457899999999999999998533 233456
Q ss_pred EeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352 414 TYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC 445 (445)
Q Consensus 414 ~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~ 445 (445)
..++.+++|...||.... ++...+ ++|||+|
T Consensus 391 ~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~a 425 (451)
T PRK11883 391 VQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVA 425 (451)
T ss_pred EeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEE
Confidence 677888889888886422 223222 6789886
No 6
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=4.5e-37 Score=306.06 Aligned_cols=386 Identities=13% Similarity=0.196 Sum_probs=268.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ------GRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNL 122 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~------G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 122 (445)
.+|+|||||++||+||+.|++. |++|+|+|+++++||+++|.+.+|+.+|.|+|++...++.+.++++++|++.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~ 81 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEE 81 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCcc
Confidence 4799999999999999999986 3799999999999999999999999999999999888889999999999875
Q ss_pred eee---cCCcEEEeCCeeEeccCCcc--chHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHc
Q 042352 123 QKF---YSGAKVYYNGQFHTVADPFR--HFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNI 197 (445)
Q Consensus 123 ~~~---~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 197 (445)
... .....++.++....++.... .+......+.....++..++.... ...... ....++.|+.+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~sv~~~l~~- 154 (463)
T PRK12416 82 EMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALK----DFITKN--KEFTKDTSLALFLES- 154 (463)
T ss_pred ceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhh----hhccCC--CCCCCCCCHHHHHHH-
Confidence 432 12345556676665543210 011111111122222222221111 111110 012357899999987
Q ss_pred CCCHHHHHHhhhhhhcccccCCccchHHHH-HHHH----------HHHh----h----c--CCCccccCccccHHHHHHh
Q 042352 198 GFSDSIIDSFFRPFFGGIFFDKELETSSRL-FDFI----------FKCL----A----L--GDNTIPANGICQIPNQIAS 256 (445)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~----~----~--g~~~~~~gG~~~l~~~l~~ 256 (445)
.++++..+.++.|++.++|+.++.+.+... +..+ ...+ . . ...+++.||++.|+++|++
T Consensus 155 ~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~ 234 (463)
T PRK12416 155 FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEE 234 (463)
T ss_pred hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHH
Confidence 588999999999999999999888876532 1111 0000 0 1 1245789999999999999
Q ss_pred cCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCC
Q 042352 257 KLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKD 333 (445)
Q Consensus 257 ~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~ 333 (445)
.+++++|++|++|++|+.++++ +.|++.+|+++.++ +||+|+|++.+.+|+.+|+ ...++.+.++.++++.|+++
T Consensus 235 ~l~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad-~VI~a~p~~~~~~ll~~~~l~~~~~~~~~~~~~~v~l~~~~~ 312 (463)
T PRK12416 235 VLTETVVKKGAVTTAVSKQGDR-YEISFANHESIQAD-YVVLAAPHDIAETLLQSNELNEQFHTFKNSSLISIYLGFDIL 312 (463)
T ss_pred hcccccEEcCCEEEEEEEcCCE-EEEEECCCCEEEeC-EEEECCCHHHHHhhcCCcchhHHHhcCCCCceEEEEEEechh
Confidence 9865689999999999988766 67888888888998 7999999999999998865 45567788999999999976
Q ss_pred CCCCCCC-eEEe-cCCCCcceEEEEeecccCCCCCCCCceEEEEEecC--C----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352 334 EIPVQEP-VLFL-NGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG--L----FADVMDDNLTAEVIRELSDWFGKST 405 (445)
Q Consensus 334 ~~~~~~~-~~~~-~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~--~----~~~~~~~e~~~~~~~~l~~~~~~~~ 405 (445)
++.++.. +.++ +......+..+.+.|+..+...|++..++.+++.+ . +.+++++++.+.++++|+++||...
T Consensus 313 ~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~ 392 (463)
T PRK12416 313 DEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG 392 (463)
T ss_pred hcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC
Confidence 5433322 2233 32222235567788887777667666666655431 2 4567899999999999999998643
Q ss_pred CCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352 406 VGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC 445 (445)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~ 445 (445)
.+. +..+.++.++.|...+|.... ++.-..+.|||++|
T Consensus 393 ~p~--~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~a 434 (463)
T PRK12416 393 EPE--VVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLA 434 (463)
T ss_pred Cce--EEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEe
Confidence 222 345666777777777765211 11222335788886
No 7
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=2.2e-36 Score=303.87 Aligned_cols=386 Identities=20% Similarity=0.239 Sum_probs=272.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCccee-
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK- 124 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~- 124 (445)
.++||+|||||++||+||++|+++ |++|+|+|+++++||+++|.+.+|+.+|.|+|++...++.+..++++ ++.-..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~~~ 89 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDLV 89 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc-CChhhee
Confidence 457999999999999999999999 99999999999999999999999999999999998888888888877 664221
Q ss_pred -ec--CCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCH
Q 042352 125 -FY--SGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSD 201 (445)
Q Consensus 125 -~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 201 (445)
.. ....++.+|+...++... ...+......+.+++......+... .. ....++.|+.+|+++ .+++
T Consensus 90 ~~~~~~~~~~~~~g~~~~~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~sv~~~l~~-~~g~ 158 (496)
T PLN02576 90 FPDPQAPRYVVWNGKLRPLPSNP------IDLPTFDLLSAPGKIRAGLGAFGWK--RP--PPPGREESVGEFVRR-HLGD 158 (496)
T ss_pred cCCCCceEEEEECCEEEEcCCCh------HHhcCcCcCChhHHHHHhHHHhhcc--CC--CCCCCCCcHHHHHHH-hcCH
Confidence 11 223556688777664321 1111223334444443322222110 00 012457899999987 4899
Q ss_pred HHHHHhhhhhhcccccCCccchHHHHHH-HHH---------------HHh------------------hcCCCccccCcc
Q 042352 202 SIIDSFFRPFFGGIFFDKELETSSRLFD-FIF---------------KCL------------------ALGDNTIPANGI 247 (445)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~------------------~~g~~~~~~gG~ 247 (445)
+.++.+++|++.++|+.++.++++.... .+. ... .....+.+.||+
T Consensus 159 ~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 238 (496)
T PLN02576 159 EVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGL 238 (496)
T ss_pred HHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchH
Confidence 9999999999999999999888775321 100 000 001236779999
Q ss_pred ccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeC--CCc-eEEeccEEEEcCChhHHhhhcCC--Cc---ccCCCC
Q 042352 248 CQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLA--NGE-TLKSEIGVILAVEEPEADKLLRQ--PV---KFQRKP 319 (445)
Q Consensus 248 ~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~--~g~-~i~a~~~VV~a~~~~~~~~ll~~--p~---~~~~~~ 319 (445)
+.|+++|++.++.++|++|++|++|+..+++.+.|++. +|+ ++++| +||+|+|+..+..|+.+ |+ .+..+.
T Consensus 239 ~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad-~VI~a~P~~~l~~ll~~~~~~~~~~l~~~~ 317 (496)
T PLN02576 239 QTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAK-AVVMTAPLYVVSEMLRPKSPAAADALPEFY 317 (496)
T ss_pred HHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeC-EEEECCCHHHHHHHhcccCHHHHHHhccCC
Confidence 99999999988326899999999999887653445443 553 68998 79999999999999886 22 456788
Q ss_pred CcceEEEEEeecCCCCCC------C-CCeEEecCCCCc-ceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCCh
Q 042352 320 ARSTVCLYFSADKDEIPV------Q-EPVLFLNGSGKG-IVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDD 387 (445)
Q Consensus 320 ~~~~~~v~~~~~~~~~~~------~-~~~~~~~~~~~~-~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~ 387 (445)
+.++.++++.|++++|.. + ..+.++.....+ ...++.+.|...|.+.|++..++..+..+. +.+++++
T Consensus 318 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~e 397 (496)
T PLN02576 318 YPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEE 397 (496)
T ss_pred CCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHH
Confidence 999999999999876432 1 122222222112 345678888888888888877776665442 4567899
Q ss_pred HHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCCccc---CC--CCeeeC
Q 042352 388 NLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSE---FS--LAVYLC 445 (445)
Q Consensus 388 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t---~~--~g~~~~ 445 (445)
++++.++++|++++|......+.....+++.++.|...+|.....+..+. .. +|||+|
T Consensus 398 e~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~a 460 (496)
T PLN02576 398 ELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLG 460 (496)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEe
Confidence 99999999999999964423344456778889999999988532111111 12 789986
No 8
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=1.9e-35 Score=294.17 Aligned_cols=395 Identities=16% Similarity=0.208 Sum_probs=278.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-cCCeeecccccchhccChhHHHhhcccCCcceeec
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFY 126 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~ 126 (445)
..+|+|||||++||++|+.|+++|++|+|+|+++.+||++.++. .+|+.+|.|.|++.+.++++.++++++|++-....
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~~ 154 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLV 154 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccccc
Confidence 46999999999999999999999999999999999999999985 57899999999999989999999999998644322
Q ss_pred CC-cEEE--eCCeeEecc--CCccchHHHHHhh-cCCccchHHHHHHhhhhhhh-hhc-------chHHHhcCCCCcHHH
Q 042352 127 SG-AKVY--YNGQFHTVA--DPFRHFWDSIKSL-ANPIGSVLDKLLIGLTRIRV-LIK-------TDEQILTSSEVPIIE 192 (445)
Q Consensus 127 ~~-~~~~--~~g~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~s~~~ 192 (445)
+. ...+ .+|....+. -++..++.....+ ..+...+.+++......... ... ....+...++.|+.+
T Consensus 155 ~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~~ 234 (569)
T PLN02487 155 KDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFSD 234 (569)
T ss_pred cccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCCcHHH
Confidence 22 1112 234433222 1233444333333 34445666666543222110 000 012233456799999
Q ss_pred HHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhh-c---CCCccccCcccc-HHHHHHhcCC--CCcEEe
Q 042352 193 LLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLA-L---GDNTIPANGICQ-IPNQIASKLP--FESILL 265 (445)
Q Consensus 193 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---g~~~~~~gG~~~-l~~~l~~~l~--g~~i~~ 265 (445)
|+++++.+++.++.+++|++.+.+..+.++.|+......+..+. . +...++.||... |++.+++.|+ |++|++
T Consensus 235 ~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l 314 (569)
T PLN02487 235 WFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHL 314 (569)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEe
Confidence 99998877779999999999999999999999886665554432 1 236789999995 9999999886 999999
Q ss_pred CceeeEEEecC--CC---cCeEEe---CCCceEEeccEEEEcCChhHHhhhcCCC--c-----ccCCCCCcceEEEEEee
Q 042352 266 NTRVLSIDFDE--QN---MPNVRL---ANGETLKSEIGVILAVEEPEADKLLRQP--V-----KFQRKPARSTVCLYFSA 330 (445)
Q Consensus 266 n~~V~~I~~~~--~~---~~~V~~---~~g~~i~a~~~VV~a~~~~~~~~ll~~p--~-----~~~~~~~~~~~~v~~~~ 330 (445)
+++|++|+.++ ++ +++|++ .+++++.+| +||+|+|++.+.+|+++. . .+..+.+.+++.+++.|
T Consensus 315 ~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~ 393 (569)
T PLN02487 315 RWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRY 393 (569)
T ss_pred CCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEe
Confidence 99999999874 22 467777 344568887 799999999999999882 1 24456678899999999
Q ss_pred cCCCCCCCC--------CeEEec----CCCCcc-eE-EEEeecccCCCCC-CCCceEEEEEe--cCCCCCCCChHHHHHH
Q 042352 331 DKDEIPVQE--------PVLFLN----GSGKGI-VN-NMFFATNVAPLYG-PLDKALISVSL--IGLFADVMDDNLTAEV 393 (445)
Q Consensus 331 ~~~~~~~~~--------~~~~~~----~~~~~~-~~-~~~~~s~~~p~~~-p~g~~~l~~~~--~~~~~~~~~~e~~~~~ 393 (445)
|++.-.... +...+. ...... +. .+...+..+ .+. .+| ..+.+.+ .+.+..++++++++.+
T Consensus 394 d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~-~~~~~~g-~~l~~vis~a~~~~~~~~~ei~~~~ 471 (569)
T PLN02487 394 NGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPED-YYKEGEG-SLIQAVLTPGDPYMPLSNDKIVEKV 471 (569)
T ss_pred cccccccccccccccccccccccccccccCCCcceEeeeecCCHHH-HcccCCc-eEEEEEEcCCccccCCCHHHHHHHH
Confidence 987511110 011111 111111 10 111111100 011 223 4444443 3457789999999999
Q ss_pred HHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352 394 IRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC 445 (445)
Q Consensus 394 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~ 445 (445)
+++|+++||........+..+.+...+.+...||.+.+||...||+||||||
T Consensus 472 ~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LA 523 (569)
T PLN02487 472 HKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLA 523 (569)
T ss_pred HHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEe
Confidence 9999999998654434456788899999999999999999999999999997
No 9
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=1.5e-35 Score=293.28 Aligned_cols=392 Identities=16% Similarity=0.215 Sum_probs=266.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee-ccCCeeecccccchhccChhHHHhhcccCCcceeecC-
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD-SVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYS- 127 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~- 127 (445)
+|+|||||++||+||+.|+++|++|+|+|+++.+||+++++ ..+|+.+|.|+|++...++.+.++++++|+.-.....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 58999999999999999999999999999999999999997 4679999999999998889999999999986332111
Q ss_pred CcEEEe--CCeeEec--cCCccchHHHHHhh-cCCccchHHHHHHhhhhhh-hhhc-------chHHHhcCCCCcHHHHH
Q 042352 128 GAKVYY--NGQFHTV--ADPFRHFWDSIKSL-ANPIGSVLDKLLIGLTRIR-VLIK-------TDEQILTSSEVPIIELL 194 (445)
Q Consensus 128 ~~~~~~--~g~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~s~~~~l 194 (445)
....+. ++....+ ..+.+.++.....+ ..+...+.+++........ .... ....+...++.|+.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l 160 (474)
T TIGR02732 81 HTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAEWF 160 (474)
T ss_pred ceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHHHH
Confidence 111122 2332221 12233343333232 3455677776654332211 0010 01223345679999999
Q ss_pred HHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhc---C-CCccccCcccc-HHHHHHhcCC--CCcEEeCc
Q 042352 195 RNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLAL---G-DNTIPANGICQ-IPNQIASKLP--FESILLNT 267 (445)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g-~~~~~~gG~~~-l~~~l~~~l~--g~~i~~n~ 267 (445)
++.+.++..++.+++|++.+.+..+.++.|+......+..+.. + ...+++||.+. +.+.|.+.|+ |++|++|+
T Consensus 161 ~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~ 240 (474)
T TIGR02732 161 LSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRH 240 (474)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCC
Confidence 9988887889999999999999999998888765433323222 1 34567777665 3444555553 99999999
Q ss_pred eeeEEEecC--CC---cCeEEeCCC---ceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecC
Q 042352 268 RVLSIDFDE--QN---MPNVRLANG---ETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADK 332 (445)
Q Consensus 268 ~V~~I~~~~--~~---~~~V~~~~g---~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~ 332 (445)
+|++|+.++ ++ +++|++.+| +++.+| +||+|+|++.+.+|+++.. .+..+.+.++.++++.|++
T Consensus 241 ~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~ 319 (474)
T TIGR02732 241 KVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDG 319 (474)
T ss_pred EEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEecc
Confidence 999999864 22 455566554 458898 7999999999999998721 3455677899999999987
Q ss_pred CCCCCCC-----CeE----Eec----CCCCcceEEEEee-cccCC-CCCCCCc-eEEEEEec--CCCCCCCChHHHHHHH
Q 042352 333 DEIPVQE-----PVL----FLN----GSGKGIVNNMFFA-TNVAP-LYGPLDK-ALISVSLI--GLFADVMDDNLTAEVI 394 (445)
Q Consensus 333 ~~~~~~~-----~~~----~~~----~~~~~~~~~~~~~-s~~~p-~~~p~g~-~~l~~~~~--~~~~~~~~~e~~~~~~ 394 (445)
+. .... ..+ .+. ..... + .++.. +...+ .+.+.+. .++.+.+. +.+.+++++++++.++
T Consensus 320 ~v-~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 396 (474)
T TIGR02732 320 WV-TELQDLAKRKQLKRAAGLDNLLYTADAD-F-SCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVD 396 (474)
T ss_pred cc-ccccchhhhhcccccccccccccccCcc-c-eeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHH
Confidence 64 1111 000 011 01000 1 00011 11112 1333343 33433332 3466789999999999
Q ss_pred HHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352 395 RELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC 445 (445)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~ 445 (445)
++|+++||.....+.....+++..++.+...||....||..+||+||||+|
T Consensus 397 ~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lA 447 (474)
T TIGR02732 397 KQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLA 447 (474)
T ss_pred HHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEe
Confidence 999999997543334445689999999999999999999999999999998
No 10
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=9e-35 Score=288.73 Aligned_cols=391 Identities=19% Similarity=0.274 Sum_probs=260.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-cCCeeecccccchhccChhHHHhhcccCCccee-ecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK-FYS 127 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~-~~~ 127 (445)
+|+|||||++||+||++|+++|++|+|+|+++++||++.++. .+|+.+|.|.|++...++++.++++++|+.... ...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 589999999999999999999999999999999999999974 578999999999999899999999999986432 222
Q ss_pred CcEEEe----CCeeEecc-CCccchHHHHHhhc--CCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352 128 GAKVYY----NGQFHTVA-DPFRHFWDSIKSLA--NPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS 200 (445)
Q Consensus 128 ~~~~~~----~g~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 200 (445)
...++. .+....+. ...+.+++....+. .+...+.+++..............+.+..++++|+.+|+++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 160 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGVP 160 (453)
T ss_pred CceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCCC
Confidence 222221 12222111 11223333322221 123445555543322111111111223346789999999999999
Q ss_pred HHHHHHhhhhhhcccccCCccchHHHHHHHHHHH-hh-cCC--CccccCc-cccHHHHHHhcCC--CCcEEeCceeeEEE
Q 042352 201 DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKC-LA-LGD--NTIPANG-ICQIPNQIASKLP--FESILLNTRVLSID 273 (445)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~--~~~~~gG-~~~l~~~l~~~l~--g~~i~~n~~V~~I~ 273 (445)
+.+.+.++.|++.++++.++.+.|+......+.. .. .++ ..+..|+ .+.+.++|.+.+. |++|++|++|++|.
T Consensus 161 ~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~ 240 (453)
T TIGR02731 161 ERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIV 240 (453)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEE
Confidence 9988899999999998888887777654322222 11 111 1223333 3566677766663 89999999999998
Q ss_pred ecCCC-cCeEEeCCCc-----eEEeccEEEEcCChhHHhhhcCCC---c----ccCCCCCcceEEEEEeecCCCCCCCCC
Q 042352 274 FDEQN-MPNVRLANGE-----TLKSEIGVILAVEEPEADKLLRQP---V----KFQRKPARSTVCLYFSADKDEIPVQEP 340 (445)
Q Consensus 274 ~~~~~-~~~V~~~~g~-----~i~a~~~VV~a~~~~~~~~ll~~p---~----~~~~~~~~~~~~v~~~~~~~~~~~~~~ 340 (445)
.++++ +++|++.+|+ ++.|+ .||+|+|++.+.+|++++ . ....+.+.+.+++++.++++++.. ..
T Consensus 241 ~~~~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~~ 318 (453)
T TIGR02731 241 LNEDGSVKHFVLADGEGQRRFEVTAD-AYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTV-DH 318 (453)
T ss_pred ECCCCCEEEEEEecCCCCceeEEECC-EEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCC-Cc
Confidence 76554 5678887765 78898 799999999999998762 1 123445778999999999986322 22
Q ss_pred eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecC--CCCCCCChHHHHHHHHHHHhHhCCC----cCCCceEeeE
Q 042352 341 VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG--LFADVMDDNLTAEVIRELSDWFGKS----TVGSWRHLRT 414 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~--~~~~~~~~e~~~~~~~~l~~~~~~~----~~~~~~~~~~ 414 (445)
++ +.... ........|.......+++++++.+.+.. .+.+++++|+++.++++|+++||.. ....+.....
T Consensus 319 ~~-~~~~~--~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~ 395 (453)
T TIGR02731 319 LL-FSRSP--LLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKV 395 (453)
T ss_pred ee-eeCCC--cceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEE
Confidence 22 22221 11101111111122344556777765432 3567899999999999999999963 1222333344
Q ss_pred eecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352 415 YRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC 445 (445)
Q Consensus 415 ~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~ 445 (445)
.+.+++.+...||....+|...||+++||+|
T Consensus 396 ~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~A 426 (453)
T TIGR02731 396 VKTPRSVYKTTPGRQQYRPHQKTPIPNFFLA 426 (453)
T ss_pred EECCCceeccCCCChhhCccccCccCCEEEe
Confidence 5778887777788766788889999999987
No 11
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=292.70 Aligned_cols=383 Identities=21% Similarity=0.228 Sum_probs=266.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc--c
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN--L 122 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~--~ 122 (445)
|+++.||+|||||++||+||+.|+++|++|+|+|+++++||++.+...+|+.+|.|+|++...++.+.+++++++.. +
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~ 80 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDF 80 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCCCcc
Confidence 46678999999999999999999999999999999999999999999999999999999988899999999998752 2
Q ss_pred eeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHH
Q 042352 123 QKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDS 202 (445)
Q Consensus 123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 202 (445)
........++++|++..++... .+.+.. ....+........+..... ...++.|+.+|+++ .++++
T Consensus 81 ~~~~~~~~~~~~g~~~~~p~~~---~~~l~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~e~l~~-~~g~~ 146 (479)
T PRK07208 81 LLRPRLSRIYYRGKFFDYPLKA---FDALKN-----LGLWRTAKCGASYLKARLR-----PRKEEDSFEDWVIN-RFGRR 146 (479)
T ss_pred ccccccceEEECCEEecCCcch---hHHHHh-----CCHhHHHHHHHHHHHHhcC-----CCCCCCCHHHHHHH-hhCHH
Confidence 2223445667788776554221 111111 1111221111111111000 11257899999987 58899
Q ss_pred HHHHhhhhhhcccccCCccchHHHHHH----------HHHHHhh----------------cCCCccccCccccHHHHHHh
Q 042352 203 IIDSFFRPFFGGIFFDKELETSSRLFD----------FIFKCLA----------------LGDNTIPANGICQIPNQIAS 256 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~----------------~g~~~~~~gG~~~l~~~l~~ 256 (445)
+.+.++.|++.++|+.++.+++..+.. .+..... .....+|+||++.++++|++
T Consensus 147 ~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~ 226 (479)
T PRK07208 147 LYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAE 226 (479)
T ss_pred HHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHH
Confidence 999999999999999998887765311 1111111 01345789999999999998
Q ss_pred cCC--CCcEEeCceeeEEEecCCCcC-eEEe--CCCc--eEEeccEEEEcCChhHHhhhcCC--Cc----ccCCCCCcce
Q 042352 257 KLP--FESILLNTRVLSIDFDEQNMP-NVRL--ANGE--TLKSEIGVILAVEEPEADKLLRQ--PV----KFQRKPARST 323 (445)
Q Consensus 257 ~l~--g~~i~~n~~V~~I~~~~~~~~-~V~~--~~g~--~i~a~~~VV~a~~~~~~~~ll~~--p~----~~~~~~~~~~ 323 (445)
.+. |++|++|++|++|..++++.+ .+.. .+|+ ++.|+ +||+|+|++.+.+++.+ |. ....+.+.+.
T Consensus 227 ~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 305 (479)
T PRK07208 227 KLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTAD-QVISSMPLRELVAALDPPPPPEVRAAAAGLRYRDF 305 (479)
T ss_pred HHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcC-EEEECCCHHHHHHhcCCCCCHHHHHHHhCCCccee
Confidence 885 899999999999999877633 3333 2453 58888 79999999998888864 22 3456778888
Q ss_pred EEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecccCCCCCCCCce-EEEEEe--c--CCCCCCCChHHHHHHHHHHH
Q 042352 324 VCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKA-LISVSL--I--GLFADVMDDNLTAEVIRELS 398 (445)
Q Consensus 324 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~-~l~~~~--~--~~~~~~~~~e~~~~~~~~l~ 398 (445)
+++++.++++. ....+++++++.. ..+..+...++..|...|+|++ .+.+.+ . ....+++++++++.++++|.
T Consensus 306 ~~v~l~~~~~~-~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~ 383 (479)
T PRK07208 306 ITVGLLVKELN-LFPDNWIYIHDPD-VKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELA 383 (479)
T ss_pred EEEEEEecCCC-CCCCceEEecCCC-CccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHH
Confidence 99999999874 2344455554432 1233344456666788888874 333222 1 23446789999999999999
Q ss_pred hHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCC---cccCCCCeeeC
Q 042352 399 DWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNP---KSEFSLAVYLC 445 (445)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~t~~~g~~~~ 445 (445)
++.+ ..........+.+..++.|.+.+|.....+. ..++.||||+|
T Consensus 384 ~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~la 432 (479)
T PRK07208 384 RLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLV 432 (479)
T ss_pred HcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceee
Confidence 9743 2233444566788889999888877533221 23568899986
No 12
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=4e-34 Score=287.60 Aligned_cols=389 Identities=18% Similarity=0.176 Sum_probs=244.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc------cee
Q 042352 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN------LQK 124 (445)
Q Consensus 51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~------~~~ 124 (445)
|||||||++||+||++|+++|++|+|+||++++||++++++.+|+.+|.|++++.. ...+.++++++|++ +.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~-~~~~~~l~~~lg~~l~~~l~~~~ 79 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM-PEALEELFALAGRDLADYVELVP 79 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc-ccHHHHHHHHcCCChhheEEEEE
Confidence 68999999999999999999999999999999999999999999999999998753 23466777777643 233
Q ss_pred ecCCcEEEeC-CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhh-----h----hcch---------HHHhcC
Q 042352 125 FYSGAKVYYN-GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRV-----L----IKTD---------EQILTS 185 (445)
Q Consensus 125 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~---------~~~~~~ 185 (445)
..+...+.+. |....+........+.+..++........++......+.. . .... ......
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (502)
T TIGR02734 80 LDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALL 159 (502)
T ss_pred CCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhcc
Confidence 3333334333 4444443333333333333221111111111111111000 0 0000 111223
Q ss_pred CCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCC--CCcE
Q 042352 186 SEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLP--FESI 263 (445)
Q Consensus 186 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g~~i 263 (445)
...++.+++++. +.++.++.++.. ....++.++.+.++ .+..+......++.+++.||++.++++|.+.++ |++|
T Consensus 160 ~~~s~~~~~~~~-~~~~~l~~~l~~-~~~~~g~~p~~~~~-~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~~G~~i 236 (502)
T TIGR02734 160 AWRSLYSKVARF-FSDERLRQAFSF-HALFLGGNPFRTPS-IYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGEL 236 (502)
T ss_pred CcCCHHHHHHhh-cCCHHHHHHhcc-cceeeccCcccchH-HHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHHCCCEE
Confidence 467888999875 566667766642 22334445544443 333333333346677899999999999998775 9999
Q ss_pred EeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCCCc-------c-cCCCCCcceEEEEEeec---
Q 042352 264 LLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQPV-------K-FQRKPARSTVCLYFSAD--- 331 (445)
Q Consensus 264 ~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~p~-------~-~~~~~~~~~~~v~~~~~--- 331 (445)
+++++|++|..+++++++|++.+|++++|+ .||+|+++..+ ..|++++. . .....+.+.+++|++++
T Consensus 237 ~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad-~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~ 315 (502)
T TIGR02734 237 RLNAEVIRIETEGGRATAVHLADGERLDAD-AVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVD 315 (502)
T ss_pred EECCeEEEEEeeCCEEEEEEECCCCEEECC-EEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeecccc
Confidence 999999999988777788999999889998 69999999765 45665521 1 12234678899999998
Q ss_pred CCCCCCCCCeEEecCCCC--------------cceEEEEeecccCCCCCCCCceEEEEEecCCCC-----CC--CChHHH
Q 042352 332 KDEIPVQEPVLFLNGSGK--------------GIVNNMFFATNVAPLYGPLDKALISVSLIGLFA-----DV--MDDNLT 390 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~-----~~--~~~e~~ 390 (445)
+++-...+|.+++..+.. .+...+..+|..||+.+|+|++++.+....... +| .++++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 395 (502)
T TIGR02734 316 GHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSVEGPRYR 395 (502)
T ss_pred CcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHHHHHHHH
Confidence 443113345555433221 234556778999999999999888765532221 23 246789
Q ss_pred HHHHHHHHhH-hCCCcCCCceEe--------eEee--cCCCCC--CCCCCC-CCCCCC-cccCCCCeeeC
Q 042352 391 AEVIRELSDW-FGKSTVGSWRHL--------RTYR--VRFAQP--NQSPPT-DLIKNP-KSEFSLAVYLC 445 (445)
Q Consensus 391 ~~~~~~l~~~-~~~~~~~~~~~~--------~~~~--~~~~~~--~~~~g~-~~~~~~-~~t~~~g~~~~ 445 (445)
+.+++.|++. +|+.+. .+... +.|. .+-+.. .....+ ..+||. ..|+++|||+|
T Consensus 396 ~~il~~l~~~~~p~l~~-~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~ 464 (502)
T TIGR02734 396 DRILAYLEERAIPGLRD-RIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLV 464 (502)
T ss_pred HHHHHHHHHhcCCChhH-heEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEe
Confidence 9999999998 998642 12211 1111 111111 111121 235775 57899999997
No 13
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=8.9e-34 Score=284.20 Aligned_cols=391 Identities=17% Similarity=0.213 Sum_probs=237.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccC--hhHHHhhcccCCcce---
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAY--PEAQKLLDYNALNLQ--- 123 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~--~~~~~l~~~lgl~~~--- 123 (445)
.||+|||||++||+||..|+++|++|+|+|+++++||++++++.+|+.+|.|+|++.... .....+++++|+++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 589999999999999999999999999999999999999999999999999999986532 235677888887643
Q ss_pred eecCCcEEEeC-C-eeEeccCCccchHHHHHhhcCCccchHHHHHHhhhh---------------hhhh------hcch-
Q 042352 124 KFYSGAKVYYN-G-QFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTR---------------IRVL------IKTD- 179 (445)
Q Consensus 124 ~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~------~~~~- 179 (445)
...+...+.+. | ....+........+.+...+.....+...+...... .... ....
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDT 161 (492)
T ss_pred cCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhh
Confidence 23333344443 3 222222222222222222111111111111100000 0000 0000
Q ss_pred HHHhcCCCCcHHHHHHHcC-CCHHHHHHhhhhhhcccccCCccchHHHHHHH-HHHHh-hcCCCccccCccccHHHHHHh
Q 042352 180 EQILTSSEVPIIELLRNIG-FSDSIIDSFFRPFFGGIFFDKELETSSRLFDF-IFKCL-ALGDNTIPANGICQIPNQIAS 256 (445)
Q Consensus 180 ~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~~gG~~~l~~~l~~ 256 (445)
.....+...|+.+|+++.+ +.++.++.++.... ..+...+....+..+.. +.... ...+.+++.||++.|+++|++
T Consensus 162 ~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l~~aL~~ 240 (492)
T TIGR02733 162 LLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQL-KLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTLSDRLVE 240 (492)
T ss_pred hhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHH-hhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHHHHHHHHH
Confidence 0011123578999998754 45666777775433 23444444333344432 22222 224577899999999999999
Q ss_pred cCC--CCcEEeCceeeEEEecCCCcCeEEeCCC-----ceEEeccEEEEcCChhHHhhhcCCCc-------ccCCC-CCc
Q 042352 257 KLP--FESILLNTRVLSIDFDEQNMPNVRLANG-----ETLKSEIGVILAVEEPEADKLLRQPV-------KFQRK-PAR 321 (445)
Q Consensus 257 ~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g-----~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~-~~~ 321 (445)
.++ |++|++|++|++|..+++++.+|.+.+| +++.|+ +||+|+|+..+.+|++++. ..+.. ...
T Consensus 241 ~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~ 319 (492)
T TIGR02733 241 ALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPS 319 (492)
T ss_pred HHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCC
Confidence 885 8999999999999998876667776665 578898 7999999999988987522 22233 455
Q ss_pred ceEEEEEeecCCCCCC--CCCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC---CCCC-------CChHH
Q 042352 322 STVCLYFSADKDEIPV--QEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL---FADV-------MDDNL 389 (445)
Q Consensus 322 ~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~---~~~~-------~~~e~ 389 (445)
+.+++|+++++...++ ..++...... .+ ...+.. +..+|+.+|+|++++.+....+ |..+ .++++
T Consensus 320 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~-~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~ 396 (492)
T TIGR02733 320 GAFVFYLGVKRAALPVDCPPHLQFLSDH-QG-SLFVSI-SQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQY 396 (492)
T ss_pred ceEEEEEeecccccCCCCCcceeeccCC-Cc-eEEEEe-CCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHH
Confidence 5779999998743222 2333222221 22 222333 3357889999999987654433 2211 14568
Q ss_pred HHHHHHHHHhHhCCCcCCCceEee--------Ee--e-cCCC-CCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352 390 TAEVIRELSDWFGKSTVGSWRHLR--------TY--R-VRFA-QPNQSPPTD-LIKNPKSEFSLAVYLC 445 (445)
Q Consensus 390 ~~~~~~~l~~~~~~~~~~~~~~~~--------~~--~-~~~~-~~~~~~g~~-~~~~~~~t~~~g~~~~ 445 (445)
.+.+++.|++.+|+.+. ++.... .| . .|.. .....+.+. .+|+..+|+++|||+|
T Consensus 397 ~~~il~~le~~~p~l~~-~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~ 464 (492)
T TIGR02733 397 TQTIIERLGHYFDLLEE-NWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLC 464 (492)
T ss_pred HHHHHHHHHHHCCCccc-cEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEe
Confidence 89999999999998642 222111 11 0 0111 111122221 2456668999999997
No 14
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=7.4e-33 Score=277.07 Aligned_cols=354 Identities=17% Similarity=0.157 Sum_probs=221.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhcc----Ch-hHHHhhcccCCcce
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA----YP-EAQKLLDYNALNLQ 123 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~----~~-~~~~l~~~lgl~~~ 123 (445)
+||+|||||++||+||.+|+++|++|+|+||++.+||++++++.+|+.+|.|++++.+. .+ .+.++++.++..+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 59999999999999999999999999999999999999999999999999999987542 22 24455555554333
Q ss_pred eecCC--cEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhh----h-h---cc--------------
Q 042352 124 KFYSG--AKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRV----L-I---KT-------------- 178 (445)
Q Consensus 124 ~~~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~---~~-------------- 178 (445)
..... ..+.+ +|....+........+.+.+.+.......+++......... . . ..
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLA 160 (493)
T ss_pred ccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhh
Confidence 22211 12222 33333333333333333333221111111111111000000 0 0 00
Q ss_pred hHHHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccC-CccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhc
Q 042352 179 DEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFD-KELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASK 257 (445)
Q Consensus 179 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~ 257 (445)
...+..+...++.+++++. +.++.++.++...+. .++. +..+.+.......+.....++.++|.||++.++++|.+.
T Consensus 161 ~~~~~~~~~~s~~~~~~~~-~~~~~l~~~l~~~~~-~~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~ 238 (493)
T TIGR02730 161 CLGLAKYLPQNAGDIARRY-IRDPGLLKFIDIECF-CWSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAESLVKG 238 (493)
T ss_pred hhHHHHHhhccHHHHHHHh-cCCHHHHHHHHHHHH-hccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHHHHHH
Confidence 0001112246788888775 455556666543221 1222 223333222222222233467889999999999999988
Q ss_pred CC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCCC---c----c-cCCCCCcceEEE
Q 042352 258 LP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQP---V----K-FQRKPARSTVCL 326 (445)
Q Consensus 258 l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~p---~----~-~~~~~~~~~~~v 326 (445)
++ |++|+++++|++|..+++++.+|++.+|++++|+ .||+|++++.+ .+|+++. . . .......+.+++
T Consensus 239 ~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad-~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~ 317 (493)
T TIGR02730 239 LEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAK-RIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSL 317 (493)
T ss_pred HHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcC-EEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEE
Confidence 86 9999999999999988877889999999889998 69999988765 5687652 1 1 122446678999
Q ss_pred EEeecCCCCCC--CCCeEEecCCC----CcceEEEEeecccCCCCCCCCceEEEEEecCC---CCC-----C--CChHHH
Q 042352 327 YFSADKDEIPV--QEPVLFLNGSG----KGIVNNMFFATNVAPLYGPLDKALISVSLIGL---FAD-----V--MDDNLT 390 (445)
Q Consensus 327 ~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~---~~~-----~--~~~e~~ 390 (445)
|++++....|. ..+.+.+.... ......+.++|..||+++|+|++++.+..... |.+ | .++++.
T Consensus 318 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~ 397 (493)
T TIGR02730 318 HLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADA 397 (493)
T ss_pred EEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHH
Confidence 99998854221 11222222111 11244567788899999999999987765322 221 2 246689
Q ss_pred HHHHHHHHhHhCCCc
Q 042352 391 AEVIRELSDWFGKST 405 (445)
Q Consensus 391 ~~~~~~l~~~~~~~~ 405 (445)
+.+++.|++++|+.+
T Consensus 398 ~~il~~l~~~~p~l~ 412 (493)
T TIGR02730 398 ERIIDRLEKIFPGLD 412 (493)
T ss_pred HHHHHHHHHHCCChh
Confidence 999999999999864
No 15
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-32 Score=273.30 Aligned_cols=393 Identities=21% Similarity=0.245 Sum_probs=237.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccCh-hH-HHhh--cccCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYP-EA-QKLL--DYNALNL 122 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~-~~-~~l~--~~lgl~~ 122 (445)
..+||||||||++||+||.+|+++|++|+|+||++.+||++++++.+|+.||.|++++..... .+ .++- +..++.+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~~~~~~l~~l~~~~l~~ 81 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPGPLFRELGNLDADGLDL 81 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchHHHHHHhccCcccceee
Confidence 468999999999999999999999999999999999999999999999999999987654322 22 2222 2233333
Q ss_pred eeecCCcEEEeC-CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhh----hhh-hh-----------c---chHHH
Q 042352 123 QKFYSGAKVYYN-GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTR----IRV-LI-----------K---TDEQI 182 (445)
Q Consensus 123 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-----------~---~~~~~ 182 (445)
....+....... |........+...................++...+.+ +.. .. . ..-..
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (487)
T COG1233 82 LPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRL 161 (487)
T ss_pred eccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHH
Confidence 333333334443 4444443333333333332222222222222111111 000 00 0 00001
Q ss_pred hcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCC--C
Q 042352 183 LTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLP--F 260 (445)
Q Consensus 183 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g 260 (445)
......+..+++... +..+.++..+.......+ .++.+.. .++.++......+++.+|+||++.|+++|++.++ |
T Consensus 162 ~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~-a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~~~~G 238 (487)
T COG1233 162 LGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP-ALYLLLSHLGLSGGVFYPRGGMGALVDALAELAREHG 238 (487)
T ss_pred HHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh-HHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHHHHcC
Confidence 112345666666665 666666665543322222 3444444 5555666666677899999999999999999886 9
Q ss_pred CcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc----ccCCCCCcceEEEEEeecCCCCC
Q 042352 261 ESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV----KFQRKPARSTVCLYFSADKDEIP 336 (445)
Q Consensus 261 ~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~----~~~~~~~~~~~~v~~~~~~~~~~ 336 (445)
|+|+++++|++|..++++.+++++.+|+.++++ .||++........+.+... .....+..+.+..+++++....+
T Consensus 239 g~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad-~vv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~al~~~~g~~~~~~~ 317 (487)
T COG1233 239 GEIRTGAEVSQILVEGGKGVGVRTSDGENIEAD-AVVSNADPALLARLLGEARRPRYRGSYLKSLSALSLYLGLKGDLLP 317 (487)
T ss_pred CEEECCCceEEEEEeCCcceEEeccccceeccc-eeEecCchhhhhhhhhhhhhhccccchhhhhHHHHhccCCCCCCcc
Confidence 999999999999999988788888888678888 7999999954555555411 22334566677777877764112
Q ss_pred CCCC-eEEecCCCC---cc---------eEEEEeecccCCCCCCCCceEEEEEecCCC--CC--CCChHHHHHHHHHHHh
Q 042352 337 VQEP-VLFLNGSGK---GI---------VNNMFFATNVAPLYGPLDKALISVSLIGLF--AD--VMDDNLTAEVIRELSD 399 (445)
Q Consensus 337 ~~~~-~~~~~~~~~---~~---------~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~--~~--~~~~e~~~~~~~~l~~ 399 (445)
..++ .++..++.. .. +..+..||..||+++|+|++.+...+..-+ .. -.++++.+. +.++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 396 (487)
T COG1233 318 LAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESLADA-IDALEE 396 (487)
T ss_pred hhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHHHHHHH-HHHHhh
Confidence 3233 333333321 11 347888999999999999872222221111 11 123444444 568899
Q ss_pred HhCCCcCCCceEeeEeec-----------C--CCCCCCCCCCCCCCCCc-ccCCCCeeeC
Q 042352 400 WFGKSTVGSWRHLRTYRV-----------R--FAQPNQSPPTDLIKNPK-SEFSLAVYLC 445 (445)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~g~~~~~~~~-~t~~~g~~~~ 445 (445)
++|+.+... .+...+.. | +............||.. +||++|||+|
T Consensus 397 ~~p~~~~~i-v~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~ 455 (487)
T COG1233 397 LAPGLRDRI-VAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLV 455 (487)
T ss_pred cCCCcccce-eEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEe
Confidence 999866322 22122111 1 11112222233557765 5999999997
No 16
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=6.4e-32 Score=267.05 Aligned_cols=367 Identities=18% Similarity=0.179 Sum_probs=226.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhcc--ChhHHHhhcccCCcceeec
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA--YPEAQKLLDYNALNLQKFY 126 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~~~~~ 126 (445)
.+|+|||||++||+||+.|.++|++|+|||+++++|||+.|.+.+|+.+|+|++|+.+. .+.+.++++++|++..+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 47999999999999999999999999999999999999999888899999999998753 3358899999999765432
Q ss_pred CCc-EEEeCC-e-eEeccCC-ccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcC----
Q 042352 127 SGA-KVYYNG-Q-FHTVADP-FRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIG---- 198 (445)
Q Consensus 127 ~~~-~~~~~g-~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~---- 198 (445)
... .++..+ . ...+... ...+.... ..+...+.++....... .....++.|+.+|+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~ 148 (435)
T PLN02268 81 GDNSVLYDHDLESYALFDMDGNQVPQELV-----------TKVGETFERILEETEKV-RDEHEEDMSLLQAISIVLERHP 148 (435)
T ss_pred CCccccccccccccceecCCCCCCCHHHH-----------HHHHHHHHHHHHHHHHH-HhccCCCcCHHHHHHHHhhhCc
Confidence 221 112111 0 0000000 00011111 01111111111100000 011346788888875421
Q ss_pred ------CCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEE
Q 042352 199 ------FSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSI 272 (445)
Q Consensus 199 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I 272 (445)
+.++++..++.+ +.+.++.+..+++...+.. .....|++..+.+|+++++++|++. ++|++|++|++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~~~g~~~~~~~G~~~l~~~l~~~---~~i~~~~~V~~i 222 (435)
T PLN02268 149 ELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EELLEGGHGLMVRGYDPVINTLAKG---LDIRLNHRVTKI 222 (435)
T ss_pred ccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--ccccCCCceeecCCHHHHHHHHhcc---CceeCCCeeEEE
Confidence 234444444445 3345666666665442211 0011244567788999999999874 479999999999
Q ss_pred EecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhh--cCCC---c----ccCCCCCcceEEEEEeecCCCCCCCCCeEE
Q 042352 273 DFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKL--LRQP---V----KFQRKPARSTVCLYFSADKDEIPVQEPVLF 343 (445)
Q Consensus 273 ~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~l--l~~p---~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 343 (445)
..++++ +.|++.+|+++.|+ +||+|+|+..++++ ...| + .++...+....++++.|+++||+.. ....
T Consensus 223 ~~~~~~-v~v~~~~g~~~~ad-~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g 299 (435)
T PLN02268 223 VRRYNG-VKVTVEDGTTFVAD-AAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLG 299 (435)
T ss_pred EEcCCc-EEEEECCCcEEEcC-EEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceee
Confidence 988765 67888899889998 79999999998642 2223 2 3456778889999999999987532 2211
Q ss_pred -ecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCc------CCCceEe
Q 042352 344 -LNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKST------VGSWRHL 412 (445)
Q Consensus 344 -~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~------~~~~~~~ 412 (445)
+.+... .+.+.++.. .+.|..++.++..+. +.+++++++++.++++|+++||... ..+|...
T Consensus 300 ~~~~~~~----~~~~~~~~~---~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~d 372 (435)
T PLN02268 300 VVAPTSY----GCSYFLNLH---KATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSD 372 (435)
T ss_pred ccCCCCC----CceEEEecc---cCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCC
Confidence 111101 111212211 124566666655443 4568899999999999999998642 3455432
Q ss_pred eEeecCCCCCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352 413 RTYRVRFAQPNQSPPTD-LIKNPKSEFSLAVYLC 445 (445)
Q Consensus 413 ~~~~~~~~~~~~~~g~~-~~~~~~~t~~~g~~~~ 445 (445)
+-.+.+|+.+ .||+. ...+.-.+|+.+||+|
T Consensus 373 p~~~G~~~~~--~~g~~~~~~~~l~~p~~~l~FA 404 (435)
T PLN02268 373 PNSLGCYSYD--LVGKPHDLYERLRAPVDNLFFA 404 (435)
T ss_pred CCCCccCCCC--CCCCCHHHHHHHhCCCCCeEEe
Confidence 2222234433 46653 2233345567778876
No 17
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.98 E-value=6.2e-30 Score=252.33 Aligned_cols=369 Identities=19% Similarity=0.256 Sum_probs=243.2
Q ss_pred HHHHHHHHCCCCEEEEecCCCCCcceeeeccCCe--eecccccchhccChhHHHhhcccCCcceee-cCCcEEEe-CC-e
Q 042352 62 AAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGF--LLDRGFQIFITAYPEAQKLLDYNALNLQKF-YSGAKVYY-NG-Q 136 (445)
Q Consensus 62 saA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~--~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~-~~~~~~~~-~g-~ 136 (445)
+||++|+++|++|+|+|+++++||++.|++.+|+ .+|.|+|++.+.++.+.++++++|++.... ......+. .+ .
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~ 80 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGGR 80 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCCC
Confidence 5899999999999999999999999999988865 499999999888899999999999865432 11122222 12 2
Q ss_pred eEec-cCCccchHHHHHhh-cCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcc
Q 042352 137 FHTV-ADPFRHFWDSIKSL-ANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGG 214 (445)
Q Consensus 137 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (445)
...+ ..+++.+......+ ..+.....++...... +..... . .....++.|+.+|+++.+++++..+.++.+++.+
T Consensus 81 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~-~-~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~ 157 (419)
T TIGR03467 81 LSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARA-LLALRR-T-RFRALDDTTVGDWLQAAGQSERLIERLWEPLLLS 157 (419)
T ss_pred ceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHh-c-CccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1111 11233333322222 1122233333221111 001000 0 0124567999999999888889899899999999
Q ss_pred cccCCccchHHHHHHHHHH-Hhhc----CCCccccCccccHH-HHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCC
Q 042352 215 IFFDKELETSSRLFDFIFK-CLAL----GDNTIPANGICQIP-NQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLAN 286 (445)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~-~~~~----g~~~~~~gG~~~l~-~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~ 286 (445)
.|+.++.++++......+. .+.. ....+|.||+++++ ++|++.++ |++|++|++|++|+.+++++..+...+
T Consensus 158 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~ 237 (419)
T TIGR03467 158 ALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSG 237 (419)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecC
Confidence 9999988888765443332 1211 24678899988776 44777663 899999999999999887633222346
Q ss_pred CceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecccCC
Q 042352 287 GETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAP 363 (445)
Q Consensus 287 g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p 363 (445)
|+++.|| .||+|+|++.+.+|++++. .+....+.++.++++.|++++|. +.....+... .. ..++...
T Consensus 238 g~~~~~d-~vi~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~~~---~~-~~~~~~~--- 308 (419)
T TIGR03467 238 GETLPAD-AVVLAVPPRHAASLLPGEDLGALLTALGYSPITTVHLRLDRAVRL-PAPMVGLVGG---LA-QWLFDRG--- 308 (419)
T ss_pred CccccCC-EEEEcCCHHHHHHhCCCchHHHHHhhcCCcceEEEEEEeCCCcCC-CCCeeeecCC---ce-eEEEECC---
Confidence 7788998 7999999999999998733 45667888899999999998742 2222222221 11 1222211
Q ss_pred CCCCCCceEEEEEec--CCCCCCCChHHHHHHHHHHHhHhCCCcC--CCceEeeEeecCCCCCCCCCCCCCCCCCcccCC
Q 042352 364 LYGPLDKALISVSLI--GLFADVMDDNLTAEVIRELSDWFGKSTV--GSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFS 439 (445)
Q Consensus 364 ~~~p~g~~~l~~~~~--~~~~~~~~~e~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~~ 439 (445)
...+. ..++.+... ..+.+++++++++.++++|+++||.... ..|. .+++..++.+...||....+|...+|+
T Consensus 309 ~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~ 385 (419)
T TIGR03467 309 QLAGE-PGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWA--RVIKEKRATFAATPGLNRLRPGARTPW 385 (419)
T ss_pred cCCCC-CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccce--EEEEccCCccccCCcccccCCCCCCCc
Confidence 11111 123333222 2356789999999999999999997522 2343 344445566667778776788888899
Q ss_pred CCeeeC
Q 042352 440 LAVYLC 445 (445)
Q Consensus 440 ~g~~~~ 445 (445)
+|||+|
T Consensus 386 ~~l~~a 391 (419)
T TIGR03467 386 PNLFLA 391 (419)
T ss_pred CCEEEe
Confidence 999997
No 18
>PLN02529 lysine-specific histone demethylase 1
Probab=99.97 E-value=1.6e-28 Score=249.13 Aligned_cols=347 Identities=18% Similarity=0.177 Sum_probs=215.2
Q ss_pred cCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC--C--
Q 042352 19 SKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD--G-- 94 (445)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g-- 94 (445)
...+.|..++++.+. . .+....+||+|||||++||+||..|+++|++|+|+|+++++||++.+...+ |
T Consensus 139 ~~~inc~vnp~~~~~------~--~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~ 210 (738)
T PLN02529 139 NGYINFGVSPSFASP------I--PEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQF 210 (738)
T ss_pred CCCcceeecccccCC------C--CcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCc
Confidence 456788888755431 1 112356799999999999999999999999999999999999999998774 3
Q ss_pred eeecccccchhccChh-HHHhhcccCCcceeecCCcEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhh
Q 042352 95 FLLDRGFQIFITAYPE-AQKLLDYNALNLQKFYSGAKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRI 172 (445)
Q Consensus 95 ~~~d~G~~~~~~~~~~-~~~l~~~lgl~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (445)
..+|+|++|+.+...+ +..+.+++++++........++. +|...... ..... . ....++. .++
T Consensus 211 ~~~DlGaswi~g~~~npl~~la~~lgl~~~~~~~~~~~~~~~G~~v~~~--~~~~~---~-------~~~~~~l---~~~ 275 (738)
T PLN02529 211 AAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGALVDKE--IDSNI---E-------FIFNKLL---DKV 275 (738)
T ss_pred eEEecCCeeccccccchHHHHHHHhCCCccccCCCceEEeCCCcCcchh--hhhhH---H-------HHHHHHH---HHH
Confidence 4899999999875444 67788999988766544433333 33322110 00000 0 0001111 111
Q ss_pred hhhhcchHHHhcCCCCcHHHHHHHcC------CCHHHHHHhhhhhhccc---ccCCccchHHHHHHHHHHHhhcCCCccc
Q 042352 173 RVLIKTDEQILTSSEVPIIELLRNIG------FSDSIIDSFFRPFFGGI---FFDKELETSSRLFDFIFKCLALGDNTIP 243 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~s~~~~l~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 243 (445)
.......+ ...++.|+.+++++.. +++. .+.++.-....+ +......++...+.........|.+..+
T Consensus 276 ~~l~~~~~--~~~~d~Sl~~~le~~~~~~~~~~t~~-e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i 352 (738)
T PLN02529 276 TELRQIMG--GFANDISLGSVLERLRQLYGVARSTE-ERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFL 352 (738)
T ss_pred HHHHHhcc--cCccCCCHHHHHHHHHhhhccCCCHH-HHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEE
Confidence 11100111 1345789999987532 2222 122222222112 2222222332222111011123457788
Q ss_pred cCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh--hcCC---Cc----c
Q 042352 244 ANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK--LLRQ---PV----K 314 (445)
Q Consensus 244 ~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~--ll~~---p~----~ 314 (445)
.||+++|+++|++.+ .|++|++|++|..++++ +.|++ +++++.|+ +||+|+|+.++++ +... |+ +
T Consensus 353 ~GG~~~Li~aLA~~L---~IrLnt~V~~I~~~~dG-VtV~t-~~~~~~AD-~VIVTVPlgVLk~~~I~F~PpLP~~K~~A 426 (738)
T PLN02529 353 AGGNWRLINALCEGV---PIFYGKTVDTIKYGNDG-VEVIA-GSQVFQAD-MVLCTVPLGVLKKRTIRFEPELPRRKLAA 426 (738)
T ss_pred CCcHHHHHHHHHhcC---CEEcCCceeEEEEcCCe-EEEEE-CCEEEEcC-EEEECCCHHHHHhccccCCCCCCHHHHHH
Confidence 999999999999865 69999999999998766 56665 44578998 7999999999973 3333 32 4
Q ss_pred cCCCCCcceEEEEEeecCCCCCCCCCeEEecC-C--CCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCCh
Q 042352 315 FQRKPARSTVCLYFSADKDEIPVQEPVLFLNG-S--GKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDD 387 (445)
Q Consensus 315 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~ 387 (445)
++.+.+....++++.|+++||+.....+.+.. . ..+.+ ..+.+.. .+.+..++.++..+. +..++++
T Consensus 427 I~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~--~~~~~~~----~~~ggpvLvafv~G~~A~~le~lsde 500 (738)
T PLN02529 427 IDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEF--FLFYGYH----TVSGGPALVALVAGEAAQRFENTDPS 500 (738)
T ss_pred HHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceE--EEEecCC----CCCCCCEEEEEECchhhHHHhcCCHH
Confidence 67788899999999999998754333322221 1 11222 2222211 122335565655543 4568899
Q ss_pred HHHHHHHHHHHhHhCC
Q 042352 388 NLTAEVIRELSDWFGK 403 (445)
Q Consensus 388 e~~~~~~~~l~~~~~~ 403 (445)
++++.++++|+++|+.
T Consensus 501 eii~~vl~~L~~ifgp 516 (738)
T PLN02529 501 TLLHRVLSVLRGIYNP 516 (738)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999999973
No 19
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.97 E-value=1.6e-28 Score=225.24 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=141.8
Q ss_pred hcCCCccccCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC-
Q 042352 236 ALGDNTIPANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ- 311 (445)
Q Consensus 236 ~~g~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~- 311 (445)
..+++.||.||++.+.+++++.++ |++|.+++.|.+|..+++++++|.+.||+++.++ .||+++.+|.+ .+|++.
T Consensus 252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk-~VvSNAt~~~Tf~kLlp~e 330 (561)
T KOG4254|consen 252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSK-IVVSNATPWDTFEKLLPGE 330 (561)
T ss_pred cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEee-eeecCCchHHHHHHhCCCc
Confidence 456899999999999999999887 9999999999999999988999999999999997 89999999876 589988
Q ss_pred --Cc--ccCCCCCcc-eE----EEEEeecCC-CCCCCCCeE--E------------ecCCCC-----cceEEEEeecccC
Q 042352 312 --PV--KFQRKPARS-TV----CLYFSADKD-EIPVQEPVL--F------------LNGSGK-----GIVNNMFFATNVA 362 (445)
Q Consensus 312 --p~--~~~~~~~~~-~~----~v~~~~~~~-~~~~~~~~~--~------------~~~~~~-----~~~~~~~~~s~~~ 362 (445)
|+ .+++..+.+ .. -.++..+.. ..|.+++.+ . +.+++. .++..+++||..|
T Consensus 331 ~LPeef~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lD 410 (561)
T KOG4254|consen 331 ALPEEFVIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSLD 410 (561)
T ss_pred cCCchhhhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccccC
Confidence 44 233332222 12 123332222 123333321 1 111111 2356789999999
Q ss_pred CCCCCCCceEEEEEecC---CCCCC-------CChHHHHHHHHHHHhHhCCCcCCCceEee--------E--eecCCCCC
Q 042352 363 PLYGPLDKALISVSLIG---LFADV-------MDDNLTAEVIRELSDWFGKSTVGSWRHLR--------T--YRVRFAQP 422 (445)
Q Consensus 363 p~~~p~g~~~l~~~~~~---~~~~~-------~~~e~~~~~~~~l~~~~~~~~~~~~~~~~--------~--~~~~~~~~ 422 (445)
|+.+|+|+|++..+... .|... -++++.+.+.+.+++++|+.... .+... + -+.+-...
T Consensus 411 ptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsss-v~~~dvgTP~t~qr~l~~~~Gn~~ 489 (561)
T KOG4254|consen 411 PTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSS-VESYDVGTPPTHQRFLGRPGGNIF 489 (561)
T ss_pred CCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccce-EEEEecCCCchhhHHhcCCCCccc
Confidence 99999999999887533 23321 25789999999999999987532 22111 1 11112222
Q ss_pred CCCCCCCCC---CCCc-----ccCCCCeeeC
Q 042352 423 NQSPPTDLI---KNPK-----SEFSLAVYLC 445 (445)
Q Consensus 423 ~~~~g~~~~---~~~~-----~t~~~g~~~~ 445 (445)
..+-+.+.. ||.. .|||||||||
T Consensus 490 ~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlc 520 (561)
T KOG4254|consen 490 HGAMGLDQGYLHRPVMAWSNYSTPIPGLYLC 520 (561)
T ss_pred CcccccccccccCCccccccCCCCCCceEEe
Confidence 211233322 7777 9999999998
No 20
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.96 E-value=1e-27 Score=219.18 Aligned_cols=366 Identities=22% Similarity=0.254 Sum_probs=249.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCE--EEEecCCCCCcceee-eccCCeeecccccchhccCh---hHHHhhcccCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPF--VLLEASDAVGGRVRT-DSVDGFLLDRGFQIFITAYP---EAQKLLDYNALN 121 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V--~vlE~~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~---~~~~l~~~lgl~ 121 (445)
..+|+|+|||++||+|||+|++++.+| +|+|+.+++||.++| ...+|++||.|+..+.+..+ .+.++++++|++
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~ 90 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE 90 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence 468999999999999999999997755 569999999999999 55678999999999988766 688999999995
Q ss_pred --ceeecC------CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHH
Q 042352 122 --LQKFYS------GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIEL 193 (445)
Q Consensus 122 --~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 193 (445)
+.++.. ..++++.|++...+..+.... ......+...+..++.+-. .+. ..-....++|+++|
T Consensus 91 ~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~------~~~l~p~~k~L~~a~l~e~--fr~-~~~~~~~dESV~sF 161 (491)
T KOG1276|consen 91 DELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSL------KFSLQPFGKPLLEAFLREL--FRK-KVSDPSADESVESF 161 (491)
T ss_pred ceeeecCCCChhhhheeeccCcccccCCccccccc------ccccCcccchhHHHHHhhh--ccc-cCCCCCccccHHHH
Confidence 444332 245566777776654432211 0001111111222211110 000 00112347899999
Q ss_pred HHHcCCCHHHHHHhhhhhhcccccCCccchHHHH-HHHHH---------------HHhh------------------cCC
Q 042352 194 LRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRL-FDFIF---------------KCLA------------------LGD 239 (445)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~~------------------~g~ 239 (445)
+++ +|++++.+.+++|++.++|++++.+.|... +..++ ..+. ...
T Consensus 162 ~~R-rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~ 240 (491)
T KOG1276|consen 162 ARR-RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWT 240 (491)
T ss_pred HHH-hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccc
Confidence 988 599999999999999999999999887642 11111 1110 113
Q ss_pred CccccCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeC--CCceEEeccEEEEcCChhHHhhhcCCCc--
Q 042352 240 NTIPANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLA--NGETLKSEIGVILAVEEPEADKLLRQPV-- 313 (445)
Q Consensus 240 ~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~--~g~~i~a~~~VV~a~~~~~~~~ll~~p~-- 313 (445)
++-.+||++.+++++.+.|. .+.|.++-++..|.....+.+.+++. ++++..-.++++.|.|+..+.+|++...
T Consensus 241 ~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~~s 320 (491)
T KOG1276|consen 241 MFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQNS 320 (491)
T ss_pred hhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccccchh
Confidence 55679999999999999996 77888999999987765554656654 4443222224666999999999998832
Q ss_pred ---ccCCCCCcceEEEEEeecCCC--CCCCCCeEEec--CCCCcceEEEEeecccCCCCCCCCceEEEEEecC----CCC
Q 042352 314 ---KFQRKPARSTVCLYFSADKDE--IPVQEPVLFLN--GSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG----LFA 382 (445)
Q Consensus 314 ---~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~----~~~ 382 (445)
++.+++++++..|++.|+++. .|++.-.+.++ ......+.+++|+|...|.+.|.+++++.+...+ ...
T Consensus 321 ls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~ 400 (491)
T KOG1276|consen 321 LSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLA 400 (491)
T ss_pred hhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccCcCC
Confidence 577889999999999998753 33433333344 2223357889999988888888775555443211 122
Q ss_pred CCCChHHHHHHHHHHHhHhCCCc------CCCceE-eeEeecCCCCCC
Q 042352 383 DVMDDNLTAEVIRELSDWFGKST------VGSWRH-LRTYRVRFAQPN 423 (445)
Q Consensus 383 ~~~~~e~~~~~~~~l~~~~~~~~------~~~~~~-~~~~~~~~~~~~ 423 (445)
..+.+|+++.+.++|+++++... ++-|.. +++|++||....
T Consensus 401 ~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~l 448 (491)
T KOG1276|consen 401 VPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVL 448 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHH
Confidence 34689999999999999998643 223332 677777775543
No 21
>PLN02568 polyamine oxidase
Probab=99.96 E-value=5.8e-28 Score=240.78 Aligned_cols=345 Identities=19% Similarity=0.221 Sum_probs=202.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCC-----CCEEEEecCCCCCcceeeeccCCeeecccccchhcc-ChhHHHhhccc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQG-----RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA-YPEAQKLLDYN 118 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G-----~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~-~~~~~~l~~~l 118 (445)
|++..||+|||||++||+||+.|++.| ++|+|+|+++++||++.+.+..|+.+|.|++++.+. ...+.++++++
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~ 81 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEA 81 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHh
Confidence 345689999999999999999999987 899999999999999999999999999999999864 45688999999
Q ss_pred CCcceeec--C-----CcEEEe--CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhh------h--hhhhhhcchH-
Q 042352 119 ALNLQKFY--S-----GAKVYY--NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGL------T--RIRVLIKTDE- 180 (445)
Q Consensus 119 gl~~~~~~--~-----~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~- 180 (445)
|+...... . ....++ +|.. ++.. ..+.+..+. ..+.+...... . .+..+.....
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 153 (539)
T PLN02568 82 GSLESDEPWECMDGFPDRPKTVAEGGFE--VDPS---IVESISTLF---RGLMDDAQGKLIEPSEVDEVDFVKLAAKAAR 153 (539)
T ss_pred CCccccCcceecccccccceEEccCCcC--CCHH---HHHHHHHHH---HHHHHHhhcccccccccccccccccchhccc
Confidence 88432210 0 001111 1110 1000 000000000 00000000000 0 0000000000
Q ss_pred HHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHH-HHHHHHHH-----------------H-----hhc
Q 042352 181 QILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSS-RLFDFIFK-----------------C-----LAL 237 (445)
Q Consensus 181 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~-----~~~ 237 (445)
....-.+.++.+|+++. ++. .+..+.++...+.+.......+. ..+..+.. . ...
T Consensus 154 ~~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~ 231 (539)
T PLN02568 154 VCESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFP 231 (539)
T ss_pred hhccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecC
Confidence 00011234888888752 222 22222233333333333222111 01100000 0 012
Q ss_pred CCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh------hcCC
Q 042352 238 GDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK------LLRQ 311 (445)
Q Consensus 238 g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~------ll~~ 311 (445)
|..+.+.||++.|+++|++.+++.+|++|++|++|..++++ +.|++.+|+++.|+ +||+|+|+..+++ +..+
T Consensus 232 g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~-v~V~~~dG~~~~aD-~VIvTvPl~vL~~~~~~~~i~F~ 309 (539)
T PLN02568 232 GEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEP-VKLHFADGSTMTAD-HVIVTVSLGVLKAGIGEDSGLFS 309 (539)
T ss_pred CCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCe-EEEEEcCCCEEEcC-EEEEcCCHHHHhhccccccceec
Confidence 34667899999999999999976689999999999988765 77889999889998 7999999999874 2233
Q ss_pred C---c----ccCCCCCcceEEEEEeecCCCCCCCC-----CeEEec-CCCCcce---EEEEeec---ccCCCCCCCCceE
Q 042352 312 P---V----KFQRKPARSTVCLYFSADKDEIPVQE-----PVLFLN-GSGKGIV---NNMFFAT---NVAPLYGPLDKAL 372 (445)
Q Consensus 312 p---~----~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~-~~~~~~~---~~~~~~s---~~~p~~~p~g~~~ 372 (445)
| + +++.+.+....++++.|+++||.... ..+.+. ....... ....|.. ...+. ..+..+
T Consensus 310 P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v 387 (539)
T PLN02568 310 PPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI--HKNSSV 387 (539)
T ss_pred CCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccccc--CCCCCE
Confidence 3 2 45677888999999999999864311 111111 1000000 0000100 01111 124566
Q ss_pred EEEEecCC----CCCCCChHHHHHHHHHHHhHhCC
Q 042352 373 ISVSLIGL----FADVMDDNLTAEVIRELSDWFGK 403 (445)
Q Consensus 373 l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~ 403 (445)
|..++.+. +..++++++++.+++.|+++||.
T Consensus 388 L~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~ 422 (539)
T PLN02568 388 LLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKR 422 (539)
T ss_pred EEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCC
Confidence 66665554 56789999999999999999974
No 22
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.5e-28 Score=227.27 Aligned_cols=374 Identities=16% Similarity=0.107 Sum_probs=227.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF 125 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 125 (445)
+...||||||||++||+||+.|.|.|++|+|+|+++++|||+.+.+..|...|.|++++.+.++.+..+.+++|+...++
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~f 84 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGVPLEPF 84 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCCCCCce
Confidence 45689999999999999999999999999999999999999999988889999999999998888999999999998876
Q ss_pred cC--CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHh--hhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCH
Q 042352 126 YS--GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIG--LTRIRVLIKTDEQILTSSEVPIIELLRNIGFSD 201 (445)
Q Consensus 126 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 201 (445)
.. ...+.+.+.....+......... +.. ........+ ...+...... ...+.+.+++.+| . ..+
T Consensus 85 i~~g~~~~~~~~~~~~~p~~~~~~~~d---~~~---~~~~~~~~a~~~~~~~~~~t~--~~~e~~~~~~~~W-~--~~~- 152 (450)
T COG1231 85 IRDGDNVIGYVGSSKSTPKRSLTAAAD---VRG---LVAELEAKARSAGELDPGLTP--EDRELDLESLAAW-K--TSS- 152 (450)
T ss_pred eccCcccccccccccccchhccchhhh---hcc---hhhhhhhhhhcccccCcccCc--chhhhhhHHHHhh-h--hcc-
Confidence 54 22222222222111100000000 000 000000000 0000000000 0112233455555 0 000
Q ss_pred HHHHHhhhhhhccc-cc-CCccchH---HHHHHHHHH-------HhhcCCCccccCccccHHHHHHhcCCCCcEEeCcee
Q 042352 202 SIIDSFFRPFFGGI-FF-DKELETS---SRLFDFIFK-------CLALGDNTIPANGICQIPNQIASKLPFESILLNTRV 269 (445)
Q Consensus 202 ~~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~-------~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V 269 (445)
.+.+-.+....+ ++ .+..+.+ ......... ......++.+.|||+.|++++++.+ |..|+++.+|
T Consensus 153 --~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql-~~~I~~~~~V 229 (450)
T COG1231 153 --LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQL-GTRILLNEPV 229 (450)
T ss_pred --ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHh-hceEEecCce
Confidence 001101111111 11 1111111 011111111 1111235566799999999999999 7899999999
Q ss_pred eEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCC-C-
Q 042352 270 LSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQE-P- 340 (445)
Q Consensus 270 ~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~-~- 340 (445)
.+|.+++++ |.|++.+..++++| .||||+|+.++.++..+|. +.....+.+.+++.+.|+++||.... .
T Consensus 230 ~rI~q~~~g-V~Vt~~~~~~~~ad-~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~ 307 (450)
T COG1231 230 RRIDQDGDG-VTVTADDVGQYVAD-YVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILG 307 (450)
T ss_pred eeEEEcCCe-EEEEeCCcceEEec-EEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCC
Confidence 999999877 78999884579998 6999999999988877753 34557899999999999999975443 1
Q ss_pred eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEe-cCC----CCCCCChHHHHHHHHHHHhHhCCCc--------CC
Q 042352 341 VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSL-IGL----FADVMDDNLTAEVIRELSDWFGKST--------VG 407 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~-~~~----~~~~~~~e~~~~~~~~l~~~~~~~~--------~~ 407 (445)
...+.+. .+..++++|. .. .+|..+|..++ .+. +..+++++.++.++..+.++||+.. ..
T Consensus 308 G~~~tD~---~~~~i~~~s~-~~---~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~ 380 (450)
T COG1231 308 GESLTDL---GLGFISYPSA-PF---ADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASV 380 (450)
T ss_pred ceEeecC---CcceEecCcc-cc---CCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceee
Confidence 1122222 2445667766 22 24555655533 232 6678999999999999999999542 34
Q ss_pred CceEeeEeecCCCCCCCCCCCCC-CCCCcccCCCCeeeC
Q 042352 408 SWRHLRTYRVRFAQPNQSPPTDL-IKNPKSEFSLAVYLC 445 (445)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~t~~~g~~~~ 445 (445)
+|. -..|.-| ......||+.. .-|-...|...+++|
T Consensus 381 ~W~-~dpwt~G-~~aa~~~g~~~~~~~~l~~p~gRIh~A 417 (450)
T COG1231 381 DWS-KDPWTLG-GTAAYPPGQRTKLYPTLPAPHGRIHFA 417 (450)
T ss_pred ecc-cCCcCCc-cccccCCcccccccccccCCCCceEEe
Confidence 554 2334445 34445555532 233333344445543
No 23
>PLN02676 polyamine oxidase
Probab=99.96 E-value=3.5e-27 Score=233.70 Aligned_cols=371 Identities=16% Similarity=0.190 Sum_probs=217.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcceeeeccCCeeecccccchhc----cChhHHHhhcccCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT----AYPEAQKLLDYNALN 121 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lgl~ 121 (445)
..+||+|||||++||+||+.|+++|. +|+|+|+++++||++.+...+|+.+|.|++|+.. ....+.++++++|+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~ 104 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLR 104 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCc
Confidence 45799999999999999999999998 6999999999999999999999999999999854 345677888988887
Q ss_pred ceeec-C--CcEEE-eCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcH--HHHHH
Q 042352 122 LQKFY-S--GAKVY-YNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPI--IELLR 195 (445)
Q Consensus 122 ~~~~~-~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~ 195 (445)
..... . ...++ .+|+... ......+. ...+.+......+... ......++.++ .+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~~ 168 (487)
T PLN02676 105 TFYSDFDNLSSNIYKQDGGLYP--------KKVVQKSM----KVADASDEFGENLSIS----LSAKKAVDISILTAQRLF 168 (487)
T ss_pred eeecCccccceeEECCCCCCCC--------HHHHHHHH----HHHHHHHHHHHHHHHh----hcccCCCCccHHHHHHHH
Confidence 55321 1 11122 1232220 00000000 0000100000000000 00112344555 33343
Q ss_pred HcC-CC-HHHHHHhhhhhhcccccCCccchHHHHHHHHHHHh-h-cCCCccc--cCccccHHHHHHhcCC--------CC
Q 042352 196 NIG-FS-DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL-A-LGDNTIP--ANGICQIPNQIASKLP--------FE 261 (445)
Q Consensus 196 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~~--~gG~~~l~~~l~~~l~--------g~ 261 (445)
+.. .. ......++. ....++.++.+.+...+.. ...+ . .+..+.. .+|+++|+++|++.+. +.
T Consensus 169 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~~-~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~ 245 (487)
T PLN02676 169 GQVPKTPLEMVIDYYN--YDYEFAEPPRVTSLKNTEP-NPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDP 245 (487)
T ss_pred hhCCCCHHHHHHHHHh--ccceeccCccccchhhcCc-ccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCC
Confidence 321 01 111111111 0111444544444332110 0111 1 1223344 6899999999998762 26
Q ss_pred cEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh--hcCCCc-------ccCCCCCcceEEEEEeecC
Q 042352 262 SILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK--LLRQPV-------KFQRKPARSTVCLYFSADK 332 (445)
Q Consensus 262 ~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~--ll~~p~-------~~~~~~~~~~~~v~~~~~~ 332 (445)
+|++|++|++|+.++++ +.|++.+|++++|+ +||+|+|+..+++ +...|+ +++...+....|+++.|++
T Consensus 246 ~I~l~~~V~~I~~~~~g-V~V~~~~G~~~~a~-~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~ 323 (487)
T PLN02676 246 RLKLNKVVREISYSKNG-VTVKTEDGSVYRAK-YVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPY 323 (487)
T ss_pred ceecCCEeeEEEEcCCc-EEEEECCCCEEEeC-EEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCC
Confidence 79999999999998765 78999999889998 7999999999875 544443 3456778889999999999
Q ss_pred CCCCCCC--CeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCc-
Q 042352 333 DEIPVQE--PVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKST- 405 (445)
Q Consensus 333 ~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~- 405 (445)
+||+... ......+...+.. ..+.+ .+. .+++..++.+.+.++ +..+++++.++.++++|+++||...
T Consensus 324 ~FW~~~~~~~~~~~~~~~~~~~--~~~~~-~~~--~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~ 398 (487)
T PLN02676 324 KFWPSGPGTEFFLYAHERRGYY--PFWQH-LEN--EYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIP 398 (487)
T ss_pred CCCCCCCCceeeeeeccccccc--hhhhh-ccc--CCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCC
Confidence 9975321 1111111100100 01111 111 123444555554443 4568899999999999999998432
Q ss_pred ------CCCceEeeEeecCCCCCCCCCCCCC-CCCCcccCCCCeeeC
Q 042352 406 ------VGSWRHLRTYRVRFAQPNQSPPTDL-IKNPKSEFSLAVYLC 445 (445)
Q Consensus 406 ------~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~t~~~g~~~~ 445 (445)
..+|...+-.+.+|+. ..||... .++.-..|+..||+|
T Consensus 399 ~p~~~~~~~W~~dp~s~Gsys~--~~pG~~~~~~~~L~~P~gri~FA 443 (487)
T PLN02676 399 EATDILVPRWWSNRFFKGSYSN--WPIGVSRYEFDQIRAPVGRVYFT 443 (487)
T ss_pred CcceEEecccCCCCCCCcccCC--CCCCCChhHHHHHhCCCCceEEe
Confidence 3466654444444443 3466532 223334566678876
No 24
>PLN03000 amine oxidase
Probab=99.96 E-value=1.4e-26 Score=235.73 Aligned_cols=368 Identities=17% Similarity=0.161 Sum_probs=216.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC----CeeecccccchhccCh-hHHHhhcccCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD----GFLLDRGFQIFITAYP-EAQKLLDYNALN 121 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~-~~~~l~~~lgl~ 121 (445)
...||+|||||++||+||+.|++.|++|+|+|+++++||++.+.+.. ++.+|+|++|+.+... .+..+++++|+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~ 262 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSS 262 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCc
Confidence 45899999999999999999999999999999999999999998764 4789999999987654 455678999988
Q ss_pred ceeecCCcE-EEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHH----
Q 042352 122 LQKFYSGAK-VYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRN---- 196 (445)
Q Consensus 122 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~---- 196 (445)
+........ +..+|+.... .... ..... ...+......+...... ...+.++.++++.
T Consensus 263 l~~~~~~~~ly~~~Gk~v~~--~~~~---~ve~~-------fn~lLd~~~~lr~l~~~-----~~~D~SLg~aLe~~~~~ 325 (881)
T PLN03000 263 LYKVRDKCPLYRVDGKPVDP--DVDL---KVEVA-------FNQLLDKASKLRQLMGD-----VSMDVSLGAALETFRQV 325 (881)
T ss_pred eeecCCCCeEEEeCCcCCch--hhhh---hHHHH-------HHHHHHHHHHHHHHhcc-----cCcCCcHHHHHHHHHHH
Confidence 665443333 3344543210 0000 00000 01111001111110000 0113344433321
Q ss_pred --cCCCHHHHHHhhhhhhccc---ccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeE
Q 042352 197 --IGFSDSIIDSFFRPFFGGI---FFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLS 271 (445)
Q Consensus 197 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~ 271 (445)
..+.++. ..++...+..+ ++......+...+.........+.++.+.||++.|+++|++.+ .|++|++|++
T Consensus 326 ~g~~~t~e~-~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L---~I~Ln~~Vt~ 401 (881)
T PLN03000 326 SGNDVATEE-MGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENV---PILYEKTVQT 401 (881)
T ss_pred HcccCCHHH-HHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhC---CcccCCcEEE
Confidence 1122211 11112111111 1122112221111100001123457778999999999999987 4999999999
Q ss_pred EEecCCCcCeEEeCCCceEEeccEEEEcCChhHHh--hhc--CC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeE
Q 042352 272 IDFDEQNMPNVRLANGETLKSEIGVILAVEEPEAD--KLL--RQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVL 342 (445)
Q Consensus 272 I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~--~ll--~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 342 (445)
|++++++ +.|++.+ ++++|| +||+|+|+.+++ .+. ++ |+ +++.+.+....+|++.|+++||......+
T Consensus 402 I~~~~dg-V~V~~~~-~~~~AD-~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~F 478 (881)
T PLN03000 402 IRYGSNG-VKVIAGN-QVYEGD-MVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTF 478 (881)
T ss_pred EEECCCe-EEEEECC-cEEEec-eEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCce
Confidence 9998765 6677654 479998 799999999998 333 33 33 56788899999999999999975432222
Q ss_pred -EecCCCCcceEEEEeecccCCCCCC-CCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCC----------cC
Q 042352 343 -FLNGSGKGIVNNMFFATNVAPLYGP-LDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKS----------TV 406 (445)
Q Consensus 343 -~~~~~~~~~~~~~~~~s~~~p~~~p-~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~----------~~ 406 (445)
.+............+.+ +.| .|..+|.++..++ +..++++++++.++++|+++|+.. .+
T Consensus 479 G~l~~~~~~rg~~~~f~s-----~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~iv 553 (881)
T PLN03000 479 GHLTEDPNYRGEFFLFYS-----YAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVC 553 (881)
T ss_pred eEEecCCCCCceeEEEeC-----CCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEE
Confidence 22211111111122322 222 4556777666554 567899999999999999999731 14
Q ss_pred CCceEeeEeecCCCCCCCCCCCCC-CCCCcccCC--CCeeeC
Q 042352 407 GSWRHLRTYRVRFAQPNQSPPTDL-IKNPKSEFS--LAVYLC 445 (445)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~t~~--~g~~~~ 445 (445)
.+|...+-.+.+|+.. .||+.. .+..-..|+ ..||+|
T Consensus 554 trW~~DPysrGSYS~~--~pG~~~~~~d~LaePv~~GRIfFA 593 (881)
T PLN03000 554 TRWGGDPFSLGSYSNV--AVGASGDDYDILAESVGDGRLFFA 593 (881)
T ss_pred ccCCCCCCCCccccCC--CCCCchHHHHHHhCcCCCCcEEEe
Confidence 6666544444444443 466532 111112333 357775
No 25
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.96 E-value=8.5e-27 Score=237.57 Aligned_cols=331 Identities=21% Similarity=0.190 Sum_probs=200.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCC----eeecccccchhccCh-hHHHhhcccCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG----FLLDRGFQIFITAYP-EAQKLLDYNAL 120 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g----~~~d~G~~~~~~~~~-~~~~l~~~lgl 120 (445)
....+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....| ..+|+|++++.+... .+..+++++|+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl 315 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGL 315 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCC
Confidence 3568999999999999999999999999999999999999999988765 368999999987543 46778899998
Q ss_pred cceeecCCcEEE-eCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHc--
Q 042352 121 NLQKFYSGAKVY-YNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNI-- 197 (445)
Q Consensus 121 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-- 197 (445)
+.........++ .+|..... ....... .+ ..++......+... ........+.|+.+++++.
T Consensus 316 ~~~~~~~~~~~~~~dG~~~~~--~~~~~v~---~~-------f~~lL~~~~klr~~---~~~~~~~~D~SLg~~le~~~~ 380 (808)
T PLN02328 316 PLHKVRDICPLYLPDGKAVDA--EIDSKIE---AS-------FNKLLDRVCKLRQA---MIEEVKSVDVNLGTALEAFRH 380 (808)
T ss_pred ceEecCCCceEEeCCCcCcch--hhhhhHH---HH-------HHHHHHHHHHHHHh---hhhcccccCcCHHHHHHHHhh
Confidence 776554433333 33332211 0000000 00 01111100111000 0000112356888888632
Q ss_pred --CC-CHHHHHHhhhhhhccc---ccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeE
Q 042352 198 --GF-SDSIIDSFFRPFFGGI---FFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLS 271 (445)
Q Consensus 198 --~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~ 271 (445)
+. .......++...+..+ ++......+...+.........+.++.+.||++.|+++|++.+ .|++|++|++
T Consensus 381 ~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L---~I~ln~~V~~ 457 (808)
T PLN02328 381 VYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDL---PIFYERTVES 457 (808)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhhC---CcccCCeeEE
Confidence 11 1111122222222111 1111111111111000001112457778999999999999987 4999999999
Q ss_pred EEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh----hcCC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeE
Q 042352 272 IDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK----LLRQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVL 342 (445)
Q Consensus 272 I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~----ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 342 (445)
|...+++ +.| +.+|+++.|| +||+|+|+.++++ +.++ |+ +++.+.+..+.++++.|+++||......+
T Consensus 458 I~~~~dg-V~V-~~~G~~~~AD-~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~f 534 (808)
T PLN02328 458 IRYGVDG-VIV-YAGGQEFHGD-MVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTF 534 (808)
T ss_pred EEEcCCe-EEE-EeCCeEEEcC-EEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCce
Confidence 9998765 455 4578789998 7999999999873 3333 33 56788999999999999999865332221
Q ss_pred -EecCC--CCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCC
Q 042352 343 -FLNGS--GKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGK 403 (445)
Q Consensus 343 -~~~~~--~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~ 403 (445)
++... ..+.+ ..+.+.. .+.|..++..+..+. +.+++++++++.++++|+++|+.
T Consensus 535 G~l~~d~s~rG~~--~lf~s~s----~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp 596 (808)
T PLN02328 535 GHLTEDPSMRGEF--FLFYSYS----SVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHP 596 (808)
T ss_pred EEEeecCCCCceE--EEEecCC----CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCc
Confidence 22211 11111 2222211 123556777766554 44678899999999999999974
No 26
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.96 E-value=3.1e-27 Score=219.61 Aligned_cols=345 Identities=21% Similarity=0.279 Sum_probs=211.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcceeeeccCCeeecccccchhc-cChhHHHhhcccC-Ccc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT-AYPEAQKLLDYNA-LNL 122 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lg-l~~ 122 (445)
....+|+|||||+|||+||..|.+.|. +|+|+|+.+++|||++++...+-.+|+|++|+++ ....+.++.++.| +..
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~ 98 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKL 98 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccce
Confidence 345689999999999999999997765 8999999999999999999988899999999998 5667889988776 222
Q ss_pred ee-----ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhh-hhcchHH-HhcCCCCcHHHHHH
Q 042352 123 QK-----FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRV-LIKTDEQ-ILTSSEVPIIELLR 195 (445)
Q Consensus 123 ~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~s~~~~l~ 195 (445)
.. ..+......+|+.... . ....+..+.. ......+ ....+..|+++++.
T Consensus 99 ~~~tg~~~~~~~~~~~~g~~V~~--------~---------------~~~~~~~~~~~~~~~~r~~~~~~~~~SvG~~ln 155 (498)
T KOG0685|consen 99 LEVTGPAYVDNFHTRSNGEVVPE--------E---------------LLDELNEITVTLSDKLREAEIAHDEGSVGEYLN 155 (498)
T ss_pred eccCCccccceeEEEecCccCcH--------H---------------HHHHHHHHHHhhhhhcccccccCccccHHHHHH
Confidence 11 1111122233332211 1 1111111100 0000000 01134456666665
Q ss_pred HcC-----C------CHHHHHHhhhhhhc---ccccC-CccchHHHHHHHHHHHhhcC--CCccccCccccHHHHHHhcC
Q 042352 196 NIG-----F------SDSIIDSFFRPFFG---GIFFD-KELETSSRLFDFIFKCLALG--DNTIPANGICQIPNQIASKL 258 (445)
Q Consensus 196 ~~~-----~------~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~g--~~~~~~gG~~~l~~~l~~~l 258 (445)
..- . .......++..+.. ...+. +..+++...+. ......| .......|+..+.+.|++.+
T Consensus 156 ~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~--ey~~~~ge~~~~~~~kGy~~iL~~l~~~~ 233 (498)
T KOG0685|consen 156 SEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALL--EYTECPGEELLIWNKKGYKRILKLLMAVI 233 (498)
T ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhcc--ceeecCchhhheechhHHHHHHHHHhccC
Confidence 310 0 01112222222221 12222 22222221111 0111122 34455778999999999988
Q ss_pred CCCc--------EEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh----hcCC--Cc----ccCCCCC
Q 042352 259 PFES--------ILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK----LLRQ--PV----KFQRKPA 320 (445)
Q Consensus 259 ~g~~--------i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~----ll~~--p~----~~~~~~~ 320 (445)
+... +++|++|.+|+.++.+.+.|++.||+.+.|| |||||++..++++ |+.+ |. +++.+..
T Consensus 234 p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~ad-hVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgf 312 (498)
T KOG0685|consen 234 PAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHAD-HVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGF 312 (498)
T ss_pred CCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEecc-EEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccC
Confidence 6444 4455999999999777799999999999998 8999999999866 6665 33 5778889
Q ss_pred cceEEEEEeecCCCCCCCCCe---EEecCCCC---c----ceEE--EEeecccCCCCCCCCceEEEEEecCC----CCCC
Q 042352 321 RSTVCLYFSADKDEIPVQEPV---LFLNGSGK---G----IVNN--MFFATNVAPLYGPLDKALISVSLIGL----FADV 384 (445)
Q Consensus 321 ~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~---~----~~~~--~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~ 384 (445)
.+..++++.|.++|||.+-.. ++..+... . +... .+.+... .| ++|...+.|. ++.+
T Consensus 313 Gtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~----~~---~vL~gWiaG~~~~~me~l 385 (498)
T KOG0685|consen 313 GTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSW----AP---NVLLGWIAGREARHMETL 385 (498)
T ss_pred CccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCc----ch---hhhheeccCCcceehhhC
Confidence 999999999999997754332 33333310 0 1111 1222221 12 5555555443 5688
Q ss_pred CChHHHHHHHHHHHhHhCCCc--------CCCceEeeEeecCCCCCC
Q 042352 385 MDDNLTAEVIRELSDWFGKST--------VGSWRHLRTYRVRFAQPN 423 (445)
Q Consensus 385 ~~~e~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 423 (445)
+++++.+.+...|++++++.. -..|..-+.+|..|++..
T Consensus 386 sdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~s 432 (498)
T KOG0685|consen 386 SDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRS 432 (498)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEee
Confidence 999999999999999998643 355665555665555543
No 27
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=3e-26 Score=224.41 Aligned_cols=337 Identities=21% Similarity=0.259 Sum_probs=195.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCee-ecccccchhccCh-hHHHhhcccCCcce
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFL-LDRGFQIFITAYP-EAQKLLDYNALNLQ 123 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~-~~~~l~~~lgl~~~ 123 (445)
.+.++|||||||+|||+||.+|.+.|++|+|||+.+++|||++|+...+.. +|+|++++.+.+. .+.-+.+++|++..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~ 92 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELY 92 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccc
Confidence 456799999999999999999999999999999999999999999876554 9999999998776 67777888999876
Q ss_pred eecCCcEEEeC-CeeE-eccCC-----ccchHHHHHhhcCCcc----ch-HHHHHHhhhhhhhhhcchHHHhcCCCCcHH
Q 042352 124 KFYSGAKVYYN-GQFH-TVADP-----FRHFWDSIKSLANPIG----SV-LDKLLIGLTRIRVLIKTDEQILTSSEVPII 191 (445)
Q Consensus 124 ~~~~~~~~~~~-g~~~-~~~~~-----~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 191 (445)
.......++.. +... ...+. ....+.....+..... .. .+.+..+...+... .. .....
T Consensus 93 ~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~--~~~~~ 163 (501)
T KOG0029|consen 93 KVRDTCPLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSA-------SR--LMKTL 163 (501)
T ss_pred eecccccccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHH-------HH--HHHhh
Confidence 64444333322 2111 00000 0000000000000000 00 00000000000000 00 00111
Q ss_pred HHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhc-CCCccccCccccHHHHHHhcCCCCcEEeCceee
Q 042352 192 ELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLAL-GDNTIPANGICQIPNQIASKLPFESILLNTRVL 270 (445)
Q Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~ 270 (445)
.+++.++.........+..+. ..+.......+...+ .....+.. +.+....+|+..++..+++ |..|+++..|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~G~~~v~~~la~---~l~I~~~~~v~ 238 (501)
T KOG0029|consen 164 LELLLEGEADKVLQWHLVNLE-LTFIAHLENASARLW-DQDELFGGGGIHLLMKGGYEPVVNSLAE---GLDIHLNKRVR 238 (501)
T ss_pred HHHhhhhhhhHHHHHHHHHHH-HHhhccHhHhhHHhh-hhhhhcccccchhHhhCCccHHHhhcCC---CcceeeceeeE
Confidence 111222211121222221111 111111111111111 11122222 2457789999999999998 56999999999
Q ss_pred EEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh--hcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCCe
Q 042352 271 SIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK--LLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEPV 341 (445)
Q Consensus 271 ~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~--ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 341 (445)
+|.+.+++.+.+++.++..+.+| .||+++|..+++. +...|+ +++........++.+.|++.||..+..+
T Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~d-~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~ 317 (501)
T KOG0029|consen 239 KIKYGDDGAVKVTVETGDGYEAD-AVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDF 317 (501)
T ss_pred EEEEecCCceEEEEECCCeeEee-EEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCe
Confidence 99999877556776777668998 6999999999866 444443 4567788889999999999997533333
Q ss_pred EE-ecCCCCcceEEE-EeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCC
Q 042352 342 LF-LNGSGKGIVNNM-FFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGK 403 (445)
Q Consensus 342 ~~-~~~~~~~~~~~~-~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~ 403 (445)
.. .+... ..... .+.+- .|.. +..++.....+. +..++++++++.++..|+++|+.
T Consensus 318 fg~~~~~~--~~~~~~~f~~~-~~~~---~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~ 379 (501)
T KOG0029|consen 318 FGIVPETS--VLRGLFTFYDC-KPVA---GHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGS 379 (501)
T ss_pred EEEccccc--cccchhhhhhc-CccC---CCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhcc
Confidence 22 22211 11110 11111 1111 222344333332 56789999999999999999994
No 28
>PLN02976 amine oxidase
Probab=99.95 E-value=1.3e-25 Score=234.24 Aligned_cols=373 Identities=17% Similarity=0.170 Sum_probs=212.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc-CCeeecccccchhccCh--------h-HHHhhc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITAYP--------E-AQKLLD 116 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~--------~-~~~l~~ 116 (445)
..+||+|||||++|+++|+.|.+.|++|+|||+++.+||++.+... .|+.+|+|++++.+... + ...+++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ 771 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA 771 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence 3589999999999999999999999999999999999999998764 57889999998876321 2 223577
Q ss_pred ccCCcceeecCCcEEE--eCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHH
Q 042352 117 YNALNLQKFYSGAKVY--YNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELL 194 (445)
Q Consensus 117 ~lgl~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 194 (445)
.+|+...........+ .+|... + .+....+......+.+.... ..... -....++++.++|
T Consensus 772 qlGl~l~~~~~~~~~yd~~~G~~V--~------~e~~~~v~~~fn~lld~~~~-------~~~~~--g~~a~d~SLgd~L 834 (1713)
T PLN02976 772 QLGLELTVLNSDCPLYDVVTGEKV--P------ADLDEALEAEYNSLLDDMVL-------LVAQK--GEHAMKMSLEDGL 834 (1713)
T ss_pred hcCCccccccCCCceeEccCCcCC--C------HHHHHHHHHHHHHHHHHHHH-------HHhhc--ccCccCCCHHHHH
Confidence 7888765443222211 122211 0 00000000000000000000 00000 0001123344433
Q ss_pred HHcC------------------------------------CC--------HHHHHHhhhhhhccc---ccCCccchHHHH
Q 042352 195 RNIG------------------------------------FS--------DSIIDSFFRPFFGGI---FFDKELETSSRL 227 (445)
Q Consensus 195 ~~~~------------------------------------~~--------~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 227 (445)
+... .. ....+.++.-.+... ++.+..+++...
T Consensus 835 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~ 914 (1713)
T PLN02976 835 EYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPY 914 (1713)
T ss_pred HHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhh
Confidence 3100 00 000011111111111 123333333332
Q ss_pred HHHHHHH-hhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecC---------CCcCeEEeCCCceEEeccEEE
Q 042352 228 FDFIFKC-LALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDE---------QNMPNVRLANGETLKSEIGVI 297 (445)
Q Consensus 228 ~~~~~~~-~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~---------~~~~~V~~~~g~~i~a~~~VV 297 (445)
+.....+ ...|..+.+.||++.|+++|++.+ .|++|++|++|.+.+ +..+.|++.+|++++|+ +||
T Consensus 915 ~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L---~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftAD-aVI 990 (1713)
T PLN02976 915 WNQDDVYGGFGGAHCMIKGGYSNVVESLAEGL---DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGD-AVL 990 (1713)
T ss_pred hhcccccccCCCceEEeCCCHHHHHHHHHhhC---CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEec-eEE
Confidence 2100000 013456778999999999999976 599999999999852 23478889999889998 799
Q ss_pred EcCChhHHh--hhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecccCCCCCCC
Q 042352 298 LAVEEPEAD--KLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPL 368 (445)
Q Consensus 298 ~a~~~~~~~--~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~ 368 (445)
+|+|+.++. .+...|+ +++.+.+....++++.|+++||+....++....... .....++. .++...+.
T Consensus 991 VTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edt-dlrG~~~~--~wnlr~ps 1067 (1713)
T PLN02976 991 ITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEET-DLRGQCFM--FWNVKKTV 1067 (1713)
T ss_pred EeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccC-CCCceEEE--eccCCCCC
Confidence 999999986 3444443 356778888999999999999764333322111100 01111122 12222344
Q ss_pred CceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCc--------CCCceEeeEeecCCCCCCCCCCCCC-CCCCc
Q 042352 369 DKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKST--------VGSWRHLRTYRVRFAQPNQSPPTDL-IKNPK 435 (445)
Q Consensus 369 g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 435 (445)
|..+|..++.+. +..++++++++.+++.|+++||... ..+|...+-.+..|+ ...||... .+..-
T Consensus 1068 G~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYS--y~~PGs~~~d~d~L 1145 (1713)
T PLN02976 1068 GAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYS--YVAIGASGEDYDIL 1145 (1713)
T ss_pred CCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCcccc--CCCCCCCchHHHHH
Confidence 556666665553 4568899999999999999999532 456665444444443 33566532 12223
Q ss_pred ccCCCC-eeeC
Q 042352 436 SEFSLA-VYLC 445 (445)
Q Consensus 436 ~t~~~g-~~~~ 445 (445)
..|+.| ||+|
T Consensus 1146 AePVggRLFFA 1156 (1713)
T PLN02976 1146 GRPVENCLFFA 1156 (1713)
T ss_pred hCCCCCcEEEE
Confidence 345555 8776
No 29
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.95 E-value=5.3e-26 Score=202.31 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=198.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec----cCCeeecccccchhc-cChhHHHhhcccCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS----VDGFLLDRGFQIFIT-AYPEAQKLLDYNALN 121 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~----~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~ 121 (445)
.+.+|+|||+|++|||||+.|+++ ++||++|++.++||++.|.. -+|+.+|.|...++. .||++..|++++|++
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 356899999999999999999987 89999999999999999984 346789999998887 899999999999998
Q ss_pred ceeecCCcEEEeC-CeeEeccCCccchHH-HHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCC
Q 042352 122 LQKFYSGAKVYYN-GQFHTVADPFRHFWD-SIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGF 199 (445)
Q Consensus 122 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 199 (445)
.+...-.-.+..+ |.++.-..+....+. ....+..+ -.-.+.+.+.++..............+.++.+||++.++
T Consensus 86 t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~p---Rf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~f 162 (447)
T COG2907 86 TKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRP---RFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQRNF 162 (447)
T ss_pred CcccceeEEEEecCCceeeccCCCccchhhccccccch---hHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhcCc
Confidence 7653222222222 323222111111110 00001011 112223333443332222222334568899999999999
Q ss_pred CHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhh---------cCCCccccCccccHHHHHHhcCCCCcEEeCceee
Q 042352 200 SDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLA---------LGDNTIPANGICQIPNQIASKLPFESILLNTRVL 270 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~ 270 (445)
+..+.+.++.|+..++|+++..+........++..+. ...+..+.||....++.|.+.+ +++|+++++|.
T Consensus 163 ~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~-~~~i~t~~~V~ 241 (447)
T COG2907 163 GRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADI-RGRIETRTPVC 241 (447)
T ss_pred cHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccc-cceeecCCcee
Confidence 9999999999999999999988776654444333221 2246678999999999999988 67999999999
Q ss_pred EEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-----ccCCCCCcceEEEEEeecCCCCC
Q 042352 271 SIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-----KFQRKPARSTVCLYFSADKDEIP 336 (445)
Q Consensus 271 ~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-----~~~~~~~~~~~~v~~~~~~~~~~ 336 (445)
+|..-.++ +.|...+|++-+.| +||+|+-++.+..||++|. .+..+.|.....++.. |..+.|
T Consensus 242 ~l~rlPdG-v~l~~~~G~s~rFD-~vViAth~dqAl~mL~e~sp~e~qll~a~~Ys~n~aVlht-d~~lmP 309 (447)
T COG2907 242 RLRRLPDG-VVLVNADGESRRFD-AVVIATHPDQALALLDEPSPEERQLLGALRYSANTAVLHT-DASLMP 309 (447)
T ss_pred eeeeCCCc-eEEecCCCCccccc-eeeeecChHHHHHhcCCCCHHHHHHHHhhhhhhceeEEee-cccccc
Confidence 99988876 55666779876676 7999999999999999953 4555666666655543 443333
No 30
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.94 E-value=2.5e-26 Score=227.89 Aligned_cols=379 Identities=25% Similarity=0.298 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC--CeeecccccchhccChhHHHhhcccCCc--ceeec--CCcEE
Q 042352 58 LAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD--GFLLDRGFQIFITAYPEAQKLLDYNALN--LQKFY--SGAKV 131 (445)
Q Consensus 58 ~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g~~~d~G~~~~~~~~~~~~~l~~~lgl~--~~~~~--~~~~~ 131 (445)
||||+||++|+++|++|+|||+++++||+++|++.+ |+.+|.|+++|...++.+..+++++++. ..... .....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSLETFPFPQIPFV 80 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTEEEEEESSEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccccccccccceee
Confidence 699999999999999999999999999999999998 9999999999988778888888887764 22211 11111
Q ss_pred EeCCe--eEec-cCCccchHHHH---Hhh--cCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHH
Q 042352 132 YYNGQ--FHTV-ADPFRHFWDSI---KSL--ANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSI 203 (445)
Q Consensus 132 ~~~g~--~~~~-~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 203 (445)
..... .... ........... ... .........+.......... ............++.+++....+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (450)
T PF01593_consen 81 YWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFN--KAEPEFLEDDLESFLEFLDSQSFSEIF 158 (450)
T ss_dssp EEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccchhhhhhccccccccccccchhccchhhhh--hhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 11111 1100 00011100000 000 00000000000000000000 001111111223444544433222222
Q ss_pred HHHhhhhhhcccccCCccchHHHHHHHHHH---------HhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEe
Q 042352 204 IDSFFRPFFGGIFFDKELETSSRLFDFIFK---------CLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDF 274 (445)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~ 274 (445)
...++.+.............+......... ....+......|+...+.+.+.+.+ |++|++|++|++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-g~~i~l~~~V~~I~~ 237 (450)
T PF01593_consen 159 RESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEEL-GGEIRLNTPVTRIER 237 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHH-GGGEESSEEEEEEEE
T ss_pred HHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhc-CceeecCCcceeccc
Confidence 221222332222222222222222111111 1111222334555566666665555 779999999999999
Q ss_pred cCCCcCeEEeCCCceEEeccEEEEcCChhHHhh--hcCC-Cc----ccCCCCCcceEEEEEeecCCCCCCC--CCeEEec
Q 042352 275 DEQNMPNVRLANGETLKSEIGVILAVEEPEADK--LLRQ-PV----KFQRKPARSTVCLYFSADKDEIPVQ--EPVLFLN 345 (445)
Q Consensus 275 ~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~--ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~ 345 (445)
++++ +.|.+.+|+++.|| +||+|+|+..+.+ +.+. |. +.+...+.+..++++.+++++|+.. ...+...
T Consensus 238 ~~~~-v~v~~~~g~~~~ad-~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 315 (450)
T PF01593_consen 238 EDGG-VTVTTEDGETIEAD-AVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYS 315 (450)
T ss_dssp ESSE-EEEEETTSSEEEES-EEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEE
T ss_pred cccc-cccccccceEEecc-eeeecCchhhhhhhhhcccccccccccccccccCcceeEEEeeecccccccccccceecc
Confidence 9865 78999999999998 7999999999984 5544 22 3566788888999999999986543 1222222
Q ss_pred CCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCC--
Q 042352 346 GSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRF-- 419 (445)
Q Consensus 346 ~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 419 (445)
+. ......+..++. .+.. + +..++..++.+. +.+.+++++.+.++++|++++|......+....+.++..
T Consensus 316 ~~-~~~~~~~~~~~~-~~~~-~-~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~ 391 (450)
T PF01593_consen 316 DG-FSPIGYVSDPSK-FPGR-P-GGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDP 391 (450)
T ss_dssp SS-TSSEEEEEEECC-TTSC-T-TSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTST
T ss_pred cC-cccccccccccc-Cccc-c-cCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccccccccc
Confidence 22 223333344443 3333 3 444555444332 567889999999999999999963333333323333322
Q ss_pred ----CCCCCCCCCC-CCCCCcccCC-CCeeeC
Q 042352 420 ----AQPNQSPPTD-LIKNPKSEFS-LAVYLC 445 (445)
Q Consensus 420 ----~~~~~~~g~~-~~~~~~~t~~-~g~~~~ 445 (445)
++....++.. ..++...+|+ ||||+|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 423 (450)
T PF01593_consen 392 YPRGSYSYFPPGQSSQFRPALRTPIDPGLYFA 423 (450)
T ss_dssp TTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-
T ss_pred ccccccccccccccccccccccCCcceEEEEe
Confidence 1112222222 1356677778 799998
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=8.9e-25 Score=207.71 Aligned_cols=394 Identities=18% Similarity=0.147 Sum_probs=249.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc-CCeeecccccchhccChhHHHhhcccCCcceeecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYS 127 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~ 127 (445)
.+|+|+|||++||+||++|+++|++|+|+|+++++||++.+++. +|...|+|.|.|++.|.++..++++++........
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 37999999999999999999999999999999999999999865 78999999999999999999999998876433211
Q ss_pred C-cEEE-----eCCeeEeccCC-ccchHHHHHh-hcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCC
Q 042352 128 G-AKVY-----YNGQFHTVADP-FRHFWDSIKS-LANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGF 199 (445)
Q Consensus 128 ~-~~~~-----~~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 199 (445)
. ..++ ..|.+..+..+ .+.+...... +..+.....++....+........+...+.++++.++.+||++++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~g~ 160 (485)
T COG3349 81 EHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEKGA 160 (485)
T ss_pred hhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHhCC
Confidence 1 1111 11222212111 1122222211 2223333333333222211111112445667889999999999998
Q ss_pred CHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHh-----hcCCCccccCcc-ccHHHHHHhcCC--CCcEEeCceeeE
Q 042352 200 SDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL-----ALGDNTIPANGI-CQIPNQIASKLP--FESILLNTRVLS 271 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~gG~-~~l~~~l~~~l~--g~~i~~n~~V~~ 271 (445)
.....+..+.++.......+++..+++...-....+ ...-+..+.|+. ..+...+.+.++ |++++.+.+|+.
T Consensus 161 ~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~ 240 (485)
T COG3349 161 REGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKE 240 (485)
T ss_pred CchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeee
Confidence 888888888888877766666766664433222211 112344556654 344666666665 999999999999
Q ss_pred EEecCC----CcCeEEeCCCce---EEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCC
Q 042352 272 IDFDEQ----NMPNVRLANGET---LKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPV 337 (445)
Q Consensus 272 I~~~~~----~~~~V~~~~g~~---i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~ 337 (445)
|..+.. .++++... +.. ..+. .++.+.....+.++++.+. .+....-.+..++++.++...+..
T Consensus 241 l~l~~~~~~~~~~g~~~~-~~~~e~~~~~-~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~ 318 (485)
T COG3349 241 LDLDGARGLAKVTGGDVT-GPEQEQQAAL-AVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTEL 318 (485)
T ss_pred eeccccccccceEeeeec-CcceEeeehh-hhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCccccc
Confidence 988762 24555555 432 3344 5777777777777776632 344567778899999998654322
Q ss_pred CC--Ce-EEecCCCC-cceEEEEeec-ccCCCCCCCCc-eEEEEEec--CCCCCCCChHHHHHHHHHHHhHhCCCcCCCc
Q 042352 338 QE--PV-LFLNGSGK-GIVNNMFFAT-NVAPLYGPLDK-ALISVSLI--GLFADVMDDNLTAEVIRELSDWFGKSTVGSW 409 (445)
Q Consensus 338 ~~--~~-~~~~~~~~-~~~~~~~~~s-~~~p~~~p~g~-~~l~~~~~--~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~ 409 (445)
.. +. +..+..+. .......+.+ ...+.+..+|. ..+..... ..+...+++++.+.+.+++...+|.....+
T Consensus 319 ~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~- 397 (485)
T COG3349 319 TDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAK- 397 (485)
T ss_pred cccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhccc-
Confidence 11 11 11111111 1111222221 11223333343 22222211 225567899999999999999999875444
Q ss_pred eEeeEeecCCCCCCCCCCCCCCCCCcccCCCCeeeC
Q 042352 410 RHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLC 445 (445)
Q Consensus 410 ~~~~~~~~~~~~~~~~~g~~~~~~~~~t~~~g~~~~ 445 (445)
......+...+....+||....||.+.||+++|+++
T Consensus 398 ~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~la 433 (485)
T COG3349 398 LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLA 433 (485)
T ss_pred ccccceeccccccccCCCccccCCCCCCCccchhhc
Confidence 223455566888899999999999999999999985
No 32
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.90 E-value=2.6e-21 Score=187.92 Aligned_cols=249 Identities=20% Similarity=0.280 Sum_probs=156.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCC--------------------eeecccccch
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG--------------------FLLDRGFQIF 104 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g--------------------~~~d~G~~~~ 104 (445)
|++.+||||||+|++|+.+|..|+++|++|+++|++++.||+.+|++.++ +.+|+.++.+
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 46789999999999999999999999999999999999999999874322 3345556555
Q ss_pred hccChhHHHhhcccCCc----ceeecCCcEEE-eCCeeEeccCCccchHHHHHhhcCCccchHHHHHHh--hhhhhhhhc
Q 042352 105 ITAYPEAQKLLDYNALN----LQKFYSGAKVY-YNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIG--LTRIRVLIK 177 (445)
Q Consensus 105 ~~~~~~~~~l~~~lgl~----~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 177 (445)
.... .+..++.+.++. +.... +.+++ .+|+++..|. .....+..+.+.+.+|.+.. +........
T Consensus 81 ~~~G-~lv~lL~~s~v~ryleF~~l~-g~~v~~~~g~~~~vP~------s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~ 152 (443)
T PTZ00363 81 MASG-ELVKILLHTDVTRYLEFKVID-GSYVYQKEGKIHKVPA------TDMEALSSPLMGFFEKNRCKNFLQYVSNYDE 152 (443)
T ss_pred ecCC-hHHHHHhhcCccceeeeEEec-eEEEEecCCeEEECCC------CHHHHhhCCCcchhhHHHHHHHHHHHHhhcc
Confidence 4433 344555544442 32222 33444 5677766543 33344455555665554321 111111111
Q ss_pred -chHHHhc--CCCCcHHHHHHHcCCCHHHHHH---hhhhhhcccccC-CccchHHHHHHHH--HHHhhcCCCccccCccc
Q 042352 178 -TDEQILT--SSEVPIIELLRNIGFSDSIIDS---FFRPFFGGIFFD-KELETSSRLFDFI--FKCLALGDNTIPANGIC 248 (445)
Q Consensus 178 -~~~~~~~--~~~~s~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~g~~~~~~gG~~ 248 (445)
....+.. ++..|+.+|+++.++++..... ++.......+.. +..+....+..+. +..+......+|.||++
T Consensus 153 ~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g 232 (443)
T PTZ00363 153 NDPETHKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLG 232 (443)
T ss_pred CChhhhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHH
Confidence 1011111 3468999999999988764442 222221111222 2222222222222 23333345678999999
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCC-CcCeEEeCCCceEEeccEEEEcCCh
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQ-NMPNVRLANGETLKSEIGVILAVEE 302 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~-~~~~V~~~~g~~i~a~~~VV~a~~~ 302 (445)
.|+++|++.+. |+++++|++|++|..+++ ++++|++.+|++++|+ .||+....
T Consensus 233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~-~VV~~~s~ 288 (443)
T PTZ00363 233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCK-LVICDPSY 288 (443)
T ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECC-EEEECccc
Confidence 99999997664 999999999999998754 5678999999999998 68875544
No 33
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.87 E-value=4.7e-22 Score=171.70 Aligned_cols=287 Identities=21% Similarity=0.300 Sum_probs=189.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceeecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFYSG 128 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 128 (445)
.+|+|||+||+||+||+.|+.+|+.|+|+||..-+|||..|.+.++-.+|.|+++|....+.+.++.+.+.-+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~------- 74 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDD------- 74 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhC-------
Confidence 4699999999999999999999999999999999999999999999889999999987777665554432100
Q ss_pred cEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHHhh
Q 042352 129 AKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSFF 208 (445)
Q Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 208 (445)
|+=+.
T Consensus 75 ---------------------------------------------------------------------glV~~------ 79 (331)
T COG3380 75 ---------------------------------------------------------------------GLVDV------ 79 (331)
T ss_pred ---------------------------------------------------------------------Cceee------
Confidence 00000
Q ss_pred hhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCc
Q 042352 209 RPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGE 288 (445)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~ 288 (445)
....+|.-.....++. .....|.-.-||.+|++.|+..+ +|+++++|++|...+ +.+.+++++|.
T Consensus 80 --W~~~~~~~~~~~~~~~---------~d~~pyvg~pgmsalak~LAtdL---~V~~~~rVt~v~~~~-~~W~l~~~~g~ 144 (331)
T COG3380 80 --WTPAVWTFTGDGSPPR---------GDEDPYVGEPGMSALAKFLATDL---TVVLETRVTEVARTD-NDWTLHTDDGT 144 (331)
T ss_pred --ccccccccccCCCCCC---------CCCCccccCcchHHHHHHHhccc---hhhhhhhhhhheecC-CeeEEEecCCC
Confidence 0000000000000000 00111344668999999998876 899999999999884 45999997775
Q ss_pred -eEEeccEEEEcCChhHHhhhcCC-----Cc----ccCCCCCcceEEEEEeecCCC-CCCCCCeEEecCCCCcceEEEEe
Q 042352 289 -TLKSEIGVILAVEEPEADKLLRQ-----PV----KFQRKPARSTVCLYFSADKDE-IPVQEPVLFLNGSGKGIVNNMFF 357 (445)
Q Consensus 289 -~i~a~~~VV~a~~~~~~~~ll~~-----p~----~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 357 (445)
...+| .||+|.|++.+..|+.. |. .+....|.+++.+.++|+.+. .|++. .++.+. .....-
T Consensus 145 ~~~~~d-~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~vdg~----~laWla 217 (331)
T COG3380 145 RHTQFD-DVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFVDGH----PLAWLA 217 (331)
T ss_pred cccccc-eEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCC--cccCCC----eeeeee
Confidence 45676 69999999999888854 22 345677888888888888553 23433 222222 222222
Q ss_pred ecccCCCCCCCCceEEEEEecCCC----CCCCChHHHHHHHHHHHhHhCC-CcCCCceEeeEeecCCCCCCCCCCCCCCC
Q 042352 358 ATNVAPLYGPLDKALISVSLIGLF----ADVMDDNLTAEVIRELSDWFGK-STVGSWRHLRTYRVRFAQPNQSPPTDLIK 432 (445)
Q Consensus 358 ~s~~~p~~~p~g~~~l~~~~~~~~----~~~~~~e~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 432 (445)
-++..|++.|.|. ++.+....+| .+.+++..++.........++. ...+.|.+ ..++.|+.|..+.++..+-
T Consensus 218 ~d~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~--~H~WrYA~P~~~~~~~~L~ 294 (331)
T COG3380 218 RDASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSD--AHRWRYAIPNDAVAGPPLD 294 (331)
T ss_pred ccccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHH--hhccccccccccccCCccc
Confidence 3445677888886 4444444433 4567788887777777777774 34567754 4556688888887776542
Q ss_pred CCcccCCCCeeeC
Q 042352 433 NPKSEFSLAVYLC 445 (445)
Q Consensus 433 ~~~~t~~~g~~~~ 445 (445)
-.. =-+||+|
T Consensus 295 ad~---~~~l~~c 304 (331)
T COG3380 295 ADR---ELPLYAC 304 (331)
T ss_pred cCC---CCceeee
Confidence 111 2347776
No 34
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.80 E-value=3.8e-18 Score=162.01 Aligned_cols=286 Identities=13% Similarity=0.110 Sum_probs=182.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCee-ecccccchhccChhHHHhhcccCCcceeecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFL-LDRGFQIFITAYPEAQKLLDYNALNLQKFYS 127 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~ 127 (445)
+||+|||||++||++|+.|++.|.+|+|+|+++.+||.+.+...+|.. .+.|+|++....+.+.+++..+- ++..+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~-~~~~~~~ 80 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFF-ELNNYQH 80 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhc-cccceeE
Confidence 699999999999999999999999999999999999999987766644 58999999887777777766532 2223333
Q ss_pred CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHH---HHcCCCHHHH
Q 042352 128 GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELL---RNIGFSDSII 204 (445)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l---~~~~~~~~~~ 204 (445)
...++.+|++..+|- ..+.+..+... ...+.+...+...... . ...+...+.+|. .+ .+++.+.
T Consensus 81 ~~~~~~~g~~~~~P~----~~~~i~~l~~~--~~~~~~~~~l~~~~~~--~----~~~~~~~~~e~~d~~~~-~~G~~ly 147 (377)
T TIGR00031 81 RVLALYNNLDLTLPF----NFNQFRKLLGV--KDAQELQNFFNAQFKY--G----DHVPLEELQEIADPDIQ-LLYQFLY 147 (377)
T ss_pred EEEEEECCeEEccCC----CHHHHHHhccc--chHHHHHHHHHHHhhc--c----cCCCCCCHHHHHHHHHH-HHHHHHH
Confidence 356678888776643 22222222211 1112121111111000 0 011123455554 43 4779999
Q ss_pred HHhhhhhhcccccCCccchHHHHHHHHH-------HHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCC
Q 042352 205 DSFFRPFFGGIFFDKELETSSRLFDFIF-------KCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQ 277 (445)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~ 277 (445)
+.++.++...+|+.++.++++.+...+. ..+...-..+|.+|++++++.|.+.- +.+|++|+.+..|+..++
T Consensus 148 e~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~-~i~v~l~~~~~~~~~~~~ 226 (377)
T TIGR00031 148 QKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHP-LIDVKLNCHINLLKDKDS 226 (377)
T ss_pred HHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcC-CCEEEeCCccceeecccc
Confidence 9999999999999999998877554221 12222346689999999999999774 679999998888875432
Q ss_pred CcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEee-cCCCCCCCCCeEEecCCCCcceEEEE
Q 042352 278 NMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSA-DKDEIPVQEPVLFLNGSGKGIVNNMF 356 (445)
Q Consensus 278 ~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (445)
.+.+..+ .+. + .||.|.|++.+-+ . ...++++.+... .+.. +... -.+.+++..+ ..-.+.+++
T Consensus 227 ---~~~~~~~-~~~-~-~vi~Tg~id~~f~---~--~~g~L~yrsl~f-~~e~~~~~~-~q~~~~vnyp--~~~~~tRI~ 291 (377)
T TIGR00031 227 ---QLHFANK-AIR-K-PVIYTGLIDQLFG---Y--RFGALQYRSLKF-EWERHEFKN-FQGYAVVNFP--LNVPITRIV 291 (377)
T ss_pred ---ceeeccc-ccc-C-cEEEecCchHHHh---h--ccCcccceeEEE-EEEEecccc-CCCCeEEEcC--CCCCcceEE
Confidence 2444433 333 5 5999999887543 1 333456666544 3333 4332 1334444444 234566777
Q ss_pred eecccCCC
Q 042352 357 FATNVAPL 364 (445)
Q Consensus 357 ~~s~~~p~ 364 (445)
...+..+.
T Consensus 292 e~k~f~~~ 299 (377)
T TIGR00031 292 EYKHLTYV 299 (377)
T ss_pred eeecCCCC
Confidence 77665543
No 35
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.77 E-value=2.8e-17 Score=161.20 Aligned_cols=233 Identities=18% Similarity=0.193 Sum_probs=138.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCcceeeec--cCCeeecccccchhccChhHHHhhcccC-
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAVGGRVRTDS--VDGFLLDRGFQIFITAYPEAQKLLDYNA- 119 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~l~~~lg- 119 (445)
+..+|+|||||++||+||++|++. |.+|+|+|+++.+||++.++. .+|+.++.|.. +...++.+.++++.++
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~ips 99 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSIPS 99 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhccc
Confidence 457999999999999999999996 689999999999999998754 67899988866 4566788888886652
Q ss_pred -----Ccce----eecCC------cEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHh
Q 042352 120 -----LNLQ----KFYSG------AKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQIL 183 (445)
Q Consensus 120 -----l~~~----~~~~~------~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (445)
..+. .+... ..+.. +|... ......+..+.+..+.++ .... ..
T Consensus 100 le~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~----------------d~~~~~L~~k~r~~Ll~l--~l~~---e~ 158 (576)
T PRK13977 100 LEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEIL----------------DTDKFGLSKKDRKELLKL--LLTP---EE 158 (576)
T ss_pred cCCCCcccccceeeeecCCcccceeeEEcCCCCEE----------------ECcCCCCCHHHHHHHHHH--hccC---HH
Confidence 1111 11100 00110 11111 111112223333332222 1122 23
Q ss_pred cCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHh----h-cC---CC-ccccCccccHHHHH
Q 042352 184 TSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCL----A-LG---DN-TIPANGICQIPNQI 254 (445)
Q Consensus 184 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~g---~~-~~~~gG~~~l~~~l 254 (445)
++++.++.+|+++..+.. .... +...+|+-.. ..|+..+...+..+ . .. +. +....-+.+|++.|
T Consensus 159 ~Ld~~tI~d~f~~~Ff~t-~Fw~----~w~t~FaF~~-whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL 232 (576)
T PRK13977 159 KLDDKTIEDWFSPEFFET-NFWY----YWRTMFAFEK-WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPL 232 (576)
T ss_pred HhCCcCHHHHHhhcCchh-HHHH----HHHHHHCCch-hhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHH
Confidence 467899999999865533 2333 3334444443 33443332222211 1 11 11 11122347788888
Q ss_pred HhcCC--CCcEEeCceeeEEEec--C--CCcCeEEeC-CCc----eEEeccEEEEcCChhHHhh
Q 042352 255 ASKLP--FESILLNTRVLSIDFD--E--QNMPNVRLA-NGE----TLKSEIGVILAVEEPEADK 307 (445)
Q Consensus 255 ~~~l~--g~~i~~n~~V~~I~~~--~--~~~~~V~~~-~g~----~i~a~~~VV~a~~~~~~~~ 307 (445)
.+.++ ||+|++|++|++|..+ + +.+++|.+. +|+ .+.++|.||+|++-..-..
T Consensus 233 ~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 233 IKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcccc
Confidence 88775 9999999999999885 3 235677764 332 2566668999988755433
No 36
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.68 E-value=8.5e-17 Score=113.92 Aligned_cols=66 Identities=38% Similarity=0.643 Sum_probs=59.6
Q ss_pred EECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhccc
Q 042352 53 VIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYN 118 (445)
Q Consensus 53 IIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l 118 (445)
|||||++||+||+.|+++|++|+|+|+++.+||++.+...+|+.+|.|++++.. .++.+.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 899999999999999999999999999999999999999999999999999877 367888988864
No 37
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.7e-15 Score=134.55 Aligned_cols=236 Identities=14% Similarity=0.155 Sum_probs=155.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc--CC-eeecccccchhccChhHHHhhcccCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV--DG-FLLDRGFQIFITAYPEAQKLLDYNALNLQK 124 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g-~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 124 (445)
++|++|||||++|+..|..|++.|++|+|+||.+.+||.|.+... .| ...-.|+|+|+..+..+++.+..+ .++.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F-~e~~~ 79 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQF-TEFNP 79 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhh-hhhhh
Confidence 479999999999999999999999999999999999999999755 46 456789999999888888877642 12333
Q ss_pred ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHH
Q 042352 125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSII 204 (445)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~ 204 (445)
+........+|....+ +..++.+.+++..... .+.....+..... +....+..++++-.-+ -+++...
T Consensus 80 Y~hrVla~~ng~~~~l----P~nl~ti~ql~G~~~~-p~~a~~~i~~~~~------~~~~~~~q~~ee~ais-~vg~~LY 147 (374)
T COG0562 80 YQHRVLALVNGQLYPL----PFNLNTINQLFGKNFT-PDEARKFIEEQAA------EIDIAEPQNLEEQAIS-LVGRDLY 147 (374)
T ss_pred hccceeEEECCeeeec----cccHHHHHHHhCccCC-HHHHHHHHHHhhc------cccccchhhhhhHHHH-HHHHHHH
Confidence 3333444566766644 4445555555432211 1111111111110 0011112233332222 1457788
Q ss_pred HHhhhhhhcccccCCccchHHHHHHHHH-------HHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCC
Q 042352 205 DSFFRPFFGGIFFDKELETSSRLFDFIF-------KCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQ 277 (445)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~ 277 (445)
+.++.++....|+.++.++.+.+..-+. +.+..--...|.+|+..+.+.|++.- ..+|++||.-..|.....
T Consensus 148 ~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp-~I~V~Lntd~~~~~~~~~ 226 (374)
T COG0562 148 EAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHP-NIDVRLNTDFFDVKDQLR 226 (374)
T ss_pred HHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCC-CceEEecCcHHHHhhhhc
Confidence 8999999999999999988877654332 22333345579999999999999864 679999998777654421
Q ss_pred CcCeEEeCCCceEEeccEEEEcCChhHHhhhc
Q 042352 278 NMPNVRLANGETLKSEIGVILAVEEPEADKLL 309 (445)
Q Consensus 278 ~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll 309 (445)
+ +.+. .||-+.+.+.+-.-.
T Consensus 227 ---------~--~~~~-~VvytG~iD~~Fdy~ 246 (374)
T COG0562 227 ---------A--IPFA-PVVYTGPIDAYFDYC 246 (374)
T ss_pred ---------c--cCCC-ceEEecchHhhhccc
Confidence 1 3344 599999888764433
No 38
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.61 E-value=8.9e-15 Score=134.97 Aligned_cols=162 Identities=23% Similarity=0.298 Sum_probs=108.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF 125 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 125 (445)
++.+||||||||++||.||..++++|++|+|||+++.+|-++.- .-|+...+.+.....+++...+=
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~--------sGgGrCN~Tn~~~~~~~ls~~p~----- 67 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILM--------SGGGRCNFTNSEAPDEFLSRNPG----- 67 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEe--------cCCCCccccccccHHHHHHhCCC-----
Confidence 45789999999999999999999999999999999999865542 12222222222223333332110
Q ss_pred cCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHH
Q 042352 126 YSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIID 205 (445)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~ 205 (445)
+| ..+..+ +..+....+.+|+++.|+.-.
T Consensus 68 --------~~---------------------------~fl~sa-------------l~~ft~~d~i~~~e~~Gi~~~--- 96 (408)
T COG2081 68 --------NG---------------------------HFLKSA-------------LARFTPEDFIDWVEGLGIALK--- 96 (408)
T ss_pred --------cc---------------------------hHHHHH-------------HHhCCHHHHHHHHHhcCCeeE---
Confidence 00 001111 112334466677776653111
Q ss_pred HhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCcccc-CccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeE
Q 042352 206 SFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPA-NGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNV 282 (445)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V 282 (445)
. ...+..+|. ...+.|+++|.+.++ ||+|+++++|.+|+++++ ...+
T Consensus 97 -----------e------------------~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-~f~l 146 (408)
T COG2081 97 -----------E------------------EDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-GFRL 146 (408)
T ss_pred -----------E------------------ccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-eEEE
Confidence 0 012233343 778899999999886 999999999999999984 4889
Q ss_pred EeCCCceEEeccEEEEcCCh
Q 042352 283 RLANGETLKSEIGVILAVEE 302 (445)
Q Consensus 283 ~~~~g~~i~a~~~VV~a~~~ 302 (445)
.+.+|++++|+ .+|+|++-
T Consensus 147 ~t~~g~~i~~d-~lilAtGG 165 (408)
T COG2081 147 DTSSGETVKCD-SLILATGG 165 (408)
T ss_pred EcCCCCEEEcc-EEEEecCC
Confidence 99999889999 69999984
No 39
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.54 E-value=4.1e-13 Score=129.08 Aligned_cols=242 Identities=21% Similarity=0.315 Sum_probs=138.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC---------------------Ceeecccccc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD---------------------GFLLDRGFQI 103 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~---------------------g~~~d~G~~~ 103 (445)
|++.+||||+|.|+.-.-.|..|++.|++|+.+|+|+.-||...++... .+.+|+-+..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 4578999999999999999999999999999999999999999987421 3566777766
Q ss_pred hhccChhHHHhhcccC----CcceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHH--Hhhhhhhhhhc
Q 042352 104 FITAYPEAQKLLDYNA----LNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLL--IGLTRIRVLIK 177 (445)
Q Consensus 104 ~~~~~~~~~~l~~~lg----l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 177 (445)
+....+.+.-|.+ -+ ++++... +.+++.+++++..|.. ....+.....++.+|.+ +.+........
T Consensus 81 l~a~g~LV~lLi~-S~V~rYLEFk~V~-~~~v~~~~~l~kVP~s------r~dvf~s~~lsl~eKR~lmkFl~~v~~~~~ 152 (438)
T PF00996_consen 81 LYARGPLVKLLIS-SGVTRYLEFKAVD-GSYVYKNGKLHKVPCS------REDVFKSKLLSLFEKRRLMKFLKFVANYEE 152 (438)
T ss_dssp EETTSHHHHHHHH-CTGGGGSEEEEES-EEEEEETTEEEE--SS------HHHHHC-TTS-HHHHHHHHHHHHHHHHGCT
T ss_pred hhccCHHHHHHHh-CCcccceEEEEcc-eeEEEeCCEEeeCCCC------HHHhhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 6554444443333 23 2333333 3466778888877543 23334445555555432 11111111111
Q ss_pred chH---HHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCcc------chHHHHHHHHHHH--hhcCCCccccCc
Q 042352 178 TDE---QILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKEL------ETSSRLFDFIFKC--LALGDNTIPANG 246 (445)
Q Consensus 178 ~~~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~g~~~~~~gG 246 (445)
... +.......++.++++.+++++.....+...+ +++..+.. +...++..++... +..+...+|..|
T Consensus 153 ~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai--aL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG 230 (438)
T PF00996_consen 153 DDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAI--ALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYG 230 (438)
T ss_dssp TBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT--S-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-
T ss_pred CCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhh--hhccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccC
Confidence 111 1122446899999999999877554443222 22222211 1222222222222 233467789999
Q ss_pred cccHHHHHHhcCC--CCcEEeCceeeEEEecCC-CcCeEEeCCCceEEeccEEEE
Q 042352 247 ICQIPNQIASKLP--FESILLNTRVLSIDFDEQ-NMPNVRLANGETLKSEIGVIL 298 (445)
Q Consensus 247 ~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~-~~~~V~~~~g~~i~a~~~VV~ 298 (445)
.+.|++++++... |+...||++|.+|..+++ +.++|.. +|++++|+ +||.
T Consensus 231 ~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k-~vI~ 283 (438)
T PF00996_consen 231 LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAK-KVIG 283 (438)
T ss_dssp TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEES-EEEE
T ss_pred CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcC-EEEE
Confidence 9999999998765 999999999999998654 4566765 78899998 5774
No 40
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=131.63 Aligned_cols=204 Identities=19% Similarity=0.223 Sum_probs=116.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcceeeec----cCCeeeccc---ccchhccChhHHHhhc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDS----VDGFLLDRG---FQIFITAYPEAQKLLD 116 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~----~~g~~~d~G---~~~~~~~~~~~~~l~~ 116 (445)
++++||+|||||+.|+++|++|++.+ .+|+|+||.+.+|...++.+ +.|.....| +..-...+....++++
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 35799999999999999999999997 99999999999997776632 223222222 0111112334577788
Q ss_pred ccCCcceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHH
Q 042352 117 YNALNLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRN 196 (445)
Q Consensus 117 ~lgl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 196 (445)
++++++... +..+...+. ...+.+.....+... ..+. ..
T Consensus 81 q~~~~f~~~--g~l~vA~~e-----------------------~e~~~L~~l~~~~~~--ngv~---------~~----- 119 (429)
T COG0579 81 QLGIPFINC--GKLSVATGE-----------------------EEVERLEKLYERGKA--NGVF---------DL----- 119 (429)
T ss_pred HhCCccccc--CeEEEEECh-----------------------HHHHHHHHHHHHHhh--CCCc---------ce-----
Confidence 877666543 111111110 001111111111100 0000 00
Q ss_pred cCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCc---cccHHHHHHhcCC--CCcEEeCceeeE
Q 042352 197 IGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANG---ICQIPNQIASKLP--FESILLNTRVLS 271 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG---~~~l~~~l~~~l~--g~~i~~n~~V~~ 271 (445)
..++.+-++. ++|.+..- ..++.+.|.+| ...+..+|++.++ |+++++|++|+.
T Consensus 120 ~~ld~~~i~~-~eP~l~~~--------------------~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~ 178 (429)
T COG0579 120 EILDKEEIKE-LEPLLNEG--------------------AVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTG 178 (429)
T ss_pred eecCHHHHHh-hCcccccc--------------------ceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeE
Confidence 0111111211 12333200 01122333333 2345566666554 999999999999
Q ss_pred EEecCCCcCeEEeCCCce-EEeccEEEEcCChhHH--hhhcCCC
Q 042352 272 IDFDEQNMPNVRLANGET-LKSEIGVILAVEEPEA--DKLLRQP 312 (445)
Q Consensus 272 I~~~~~~~~~V~~~~g~~-i~a~~~VV~a~~~~~~--~~ll~~p 312 (445)
|++.+++++.+.+.+|++ ++|+ .||.+++.... .++...+
T Consensus 179 i~~~~dg~~~~~~~~g~~~~~ak-~Vin~AGl~Ad~la~~~g~~ 221 (429)
T COG0579 179 IEKQSDGVFVLNTSNGEETLEAK-FVINAAGLYADPLAQMAGIP 221 (429)
T ss_pred EEEeCCceEEEEecCCcEEEEee-EEEECCchhHHHHHHHhCCC
Confidence 999988767788888877 9998 79999999763 5555554
No 41
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.50 E-value=3.6e-14 Score=136.75 Aligned_cols=57 Identities=28% Similarity=0.339 Sum_probs=40.5
Q ss_pred ccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 246 GICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 246 G~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
-..++++.|.+.+. |++|+++++|++|+.++++.+.|.+++++++.|+ .||+|++-.
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~-~vILAtGG~ 165 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEAD-AVILATGGK 165 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEES-EEEE----S
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCC-EEEEecCCC
Confidence 35677888877765 9999999999999998877788999777789998 699998853
No 42
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.48 E-value=1.5e-11 Score=120.74 Aligned_cols=40 Identities=35% Similarity=0.444 Sum_probs=34.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CC-CEEEEecCCCCCc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQ-GR-PFVLLEASDAVGG 85 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~-G~-~V~vlE~~~~~GG 85 (445)
...+||+|||||+.|+++|++|+++ |. +|+|+||+...+|
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 3568999999999999999999996 85 9999999764433
No 43
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.48 E-value=2e-11 Score=119.96 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=35.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+||+|||||++|+++|++|++.|++|+|+||++.+|+.++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as 41 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS 41 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence 6999999999999999999999999999999987664443
No 44
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.47 E-value=1.6e-13 Score=132.32 Aligned_cols=69 Identities=28% Similarity=0.355 Sum_probs=50.4
Q ss_pred CccccCc---cccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC
Q 042352 240 NTIPANG---ICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ 311 (445)
Q Consensus 240 ~~~~~gG---~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~ 311 (445)
.+.+.+| ...+.++|.+.+. |++|+.+++|++|..+++++.+|.+.+|+ ++|+ +||+|++++.. .|+..
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad-~vV~a~G~~s~-~l~~~ 209 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRAD-RVVLAAGAWSP-QLLPL 209 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEEC-EEEE--GGGHH-HHHHT
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccc-eeEecccccce-eeeec
Confidence 3344555 4566777776553 99999999999999998886679999997 9998 79999999863 34433
No 45
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.46 E-value=5.9e-13 Score=112.33 Aligned_cols=67 Identities=30% Similarity=0.460 Sum_probs=53.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhcccCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYNALNLQK 124 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~ 124 (445)
..||+|||||++||+|||+|+++|.+|+|+||+-.+||-++ .|+..|+. ......++++++|++++.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~ye~ 98 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRYEE 98 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCccee
Confidence 57999999999999999999999999999999999998665 45555543 234566677777776654
No 46
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.44 E-value=2.9e-11 Score=119.21 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=41.9
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
.+.++|.+.+. |++|+.+++|++|+.++++++.|++.++ +++|+ +||+|++.+.
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~-~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITAD-AYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCC-EEEECCCcch
Confidence 44555554442 9999999999999988766556777765 78998 7999999985
No 47
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.41 E-value=6.4e-11 Score=115.13 Aligned_cols=42 Identities=29% Similarity=0.223 Sum_probs=36.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.++||+|||||+.|+++|++|+++|++|+|+|+....++..+
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~s 43 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGS 43 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcC
Confidence 358999999999999999999999999999999876544333
No 48
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.36 E-value=9.2e-12 Score=121.60 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=45.5
Q ss_pred ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH--HhhhcC
Q 042352 248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE--ADKLLR 310 (445)
Q Consensus 248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~--~~~ll~ 310 (445)
..+.++|.+.+. |++++++++|++|+.++++ +.|.+.+| ++.++ .||+|++.+. +.++++
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad-~vV~A~G~~s~~l~~~~g 212 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQG-EYEAR-TLINCAGLMSDRLAKMAG 212 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECCC-EEEeC-EEEECCCcchHHHHHHhC
Confidence 456666665553 9999999999999887655 57888777 78998 7999999975 344444
No 49
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.34 E-value=6.7e-11 Score=106.29 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=49.4
Q ss_pred CccccCccccHHHHHHhcCCCCcEEeCceeeEEEecC--CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC
Q 042352 240 NTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDE--QNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ 311 (445)
Q Consensus 240 ~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~--~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~ 311 (445)
+.++......+-+.+.+. ||.++-+..|+.|+..+ +..+.|.|.+|..+.|++ +|+|+++|. .+||+.
T Consensus 149 vi~a~kslk~~~~~~~~~--G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akk-iI~t~GaWi-~klL~~ 218 (399)
T KOG2820|consen 149 VINAAKSLKALQDKAREL--GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKK-IIFTVGAWI-NKLLPT 218 (399)
T ss_pred EeeHHHHHHHHHHHHHHc--CeEEecCcceeeEeeccCCCceeEEEeccCCeeecce-EEEEecHHH-HhhcCc
Confidence 333333333444444433 99999999999998653 345889999998899995 999999996 567765
No 50
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.32 E-value=2.1e-11 Score=118.68 Aligned_cols=37 Identities=41% Similarity=0.498 Sum_probs=34.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
+||+|||||++|+++|++|+++|.+|+|+|+.+..++
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~ 37 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHS 37 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence 5999999999999999999999999999999876543
No 51
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.29 E-value=4.9e-11 Score=118.74 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=39.4
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
.+++.|.+.+. |++|+.+++|++|+. + +.+.|++.+| +++|+ +||+|++.|.
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~-~~~~v~t~~g-~v~A~-~VV~Atga~s 237 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-G-QPAVVRTPDG-QVTAD-KVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-C-CceEEEeCCc-EEECC-EEEEcccccc
Confidence 34455554442 999999999999985 3 3467888877 68998 6999999875
No 52
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.28 E-value=1e-10 Score=115.83 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=37.3
Q ss_pred CcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352 261 ESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 261 ~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~ 305 (445)
++|++|++|++|+.++++.+.|++.+| +++|+ .||+|++.|..
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~-~VVvaAG~~S~ 274 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNRG-EIRAR-FVVVSACGYSL 274 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECCC-EEEeC-EEEECcChhHH
Confidence 679999999999988666678888888 69998 69999999864
No 53
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.27 E-value=6e-11 Score=123.28 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=48.5
Q ss_pred CCccccCcc---ccHHHHHHhcCC-CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 239 DNTIPANGI---CQIPNQIASKLP-FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 239 ~~~~~~gG~---~~l~~~l~~~l~-g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
+.+++.+|. ..+.++|.+.+. |++|+.+++|++|..++++ +.|.+.+|..+.++ .||+|++.+.
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~ad-~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDG-WQLDFAGGTLASAP-VVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCE-EEEEECCCcEEECC-EEEECCCCCc
Confidence 344444443 366777777665 7999999999999887655 56888888767898 7999999985
No 54
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.25 E-value=3.7e-10 Score=110.29 Aligned_cols=40 Identities=43% Similarity=0.658 Sum_probs=36.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
+.++||+|||||++||++||+|+++|.+|+|+|++...+|
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g 41 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence 4578999999999999999999999999999999776653
No 55
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.25 E-value=5.8e-11 Score=107.99 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||+.|++.|++|+|+|++..+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 35899999999999999999999999999999999998754
No 56
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.24 E-value=9.3e-11 Score=106.27 Aligned_cols=41 Identities=41% Similarity=0.567 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||+.|+++|++|+|+||+..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 36899999999999999999999999999999999998754
No 57
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.22 E-value=1.4e-10 Score=115.31 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=37.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s 89 (445)
+..+||+|||||+.|+++|++|++. |.+|+|+||.+.+|+..++
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~ 48 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN 48 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence 3568999999999999999999985 7899999999877765544
No 58
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.21 E-value=3e-10 Score=109.90 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+||+|||||++|+++|++|+++|++|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999865
No 59
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.19 E-value=1.2e-10 Score=117.93 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=34.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
.+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 58999999999999999999999999999999765444
No 60
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.19 E-value=1.4e-11 Score=104.88 Aligned_cols=70 Identities=29% Similarity=0.381 Sum_probs=48.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhcccCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYNALNLQK 124 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~ 124 (445)
..+||+|||||++||+||++|+++|++|+|+|++..+||... .|+..|+. ..+....+++++|++++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~----------~Gg~lf~~iVVq~~a~~iL~elgi~y~~ 85 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW----------GGGMLFNKIVVQEEADEILDELGIPYEE 85 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT----------S-CTT---EEEETTTHHHHHHHT---EE
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc----------ccccccchhhhhhhHHHHHHhCCceeEE
Confidence 358999999999999999999999999999999999998764 34444433 234567889999998876
Q ss_pred ec
Q 042352 125 FY 126 (445)
Q Consensus 125 ~~ 126 (445)
..
T Consensus 86 ~~ 87 (230)
T PF01946_consen 86 YG 87 (230)
T ss_dssp -S
T ss_pred eC
Confidence 54
No 61
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.18 E-value=1.4e-10 Score=115.88 Aligned_cols=43 Identities=37% Similarity=0.502 Sum_probs=37.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC--CCcce
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA--VGGRV 87 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~--~GG~~ 87 (445)
|+..+||+|||||++||+||+.|+++|.+|+|+||.+. .||.+
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNS 45 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence 35678999999999999999999999999999999874 56643
No 62
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.18 E-value=8.4e-10 Score=107.70 Aligned_cols=43 Identities=33% Similarity=0.480 Sum_probs=39.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.++||+|||||++|++||+.|+++|++|+|+|+++.+|-+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 5699999999999999999999999999999999999976643
No 63
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.18 E-value=1.6e-10 Score=114.72 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=36.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceee
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s 89 (445)
+||+|||||++|+++|+.|++. |.+|+|+||.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 5999999999999999999997 9999999998877754444
No 64
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.17 E-value=2.2e-10 Score=113.09 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s 89 (445)
..+||+|||||++|+++|+.|++. |.+|+|+||.+.+|-..+.
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~ 49 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN 49 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCC
Confidence 467999999999999999999998 8999999997777755543
No 65
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.15 E-value=2e-10 Score=115.43 Aligned_cols=43 Identities=35% Similarity=0.551 Sum_probs=39.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
...++||+|||||++||+||+.++++|.+|+||||.+..||..
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 4457999999999999999999999999999999999999854
No 66
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.15 E-value=1.1e-08 Score=105.14 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=36.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
.+.+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 3569999999999999999999999999999999977666
No 67
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.13 E-value=1.6e-09 Score=103.72 Aligned_cols=230 Identities=18% Similarity=0.256 Sum_probs=123.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCcceeeec--cCCeeecccccchhccChhHHHhhcccCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAVGGRVRTDS--VDGFLLDRGFQIFITAYPEAQKLLDYNALN 121 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 121 (445)
..++-|||+|+++|+||.+|.+. |.+|+|||+.+..||.+.+.. ..||..--| ......+.-+++|+..+.-.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgG-R~~~~~~eclwdLls~IPSl 80 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGG-RMMEFHYECLWDLLSSIPSL 80 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCC-ccccchhHHHHHHHHhCCCC
Confidence 35788999999999999999997 569999999999999887654 346665443 33334456677776653311
Q ss_pred cee----------ec---C---CcE-EEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhc
Q 042352 122 LQK----------FY---S---GAK-VYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILT 184 (445)
Q Consensus 122 ~~~----------~~---~---~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (445)
-.+ ++ + ... +.-+|+.... .....+..+.+..+.++. ..+. ..
T Consensus 81 e~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------------~~~~~Ls~k~r~eL~kL~--l~~E---~~ 140 (500)
T PF06100_consen 81 EDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------------DSKFGLSEKDRMELIKLL--LTPE---ED 140 (500)
T ss_pred CCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------------cCcCCCCHHHHHHHHHHh--cCCH---HH
Confidence 000 00 0 000 0011111100 000112222222222221 1111 12
Q ss_pred CCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhc-C------C-CccccCccccHHHHHHh
Q 042352 185 SSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLAL-G------D-NTIPANGICQIPNQIAS 256 (445)
Q Consensus 185 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g------~-~~~~~gG~~~l~~~l~~ 256 (445)
+.+.++.+|+...-|... +--+...+|+-.++.....+-..+.+..+. . + ......-+.+|+..|.+
T Consensus 141 L~~~~I~d~F~~~FF~Sn-----FW~~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~ 215 (500)
T PF06100_consen 141 LGDKRIEDWFSESFFESN-----FWYMWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIR 215 (500)
T ss_pred hCcccHHHhcchhhhcCc-----hhHhHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHH
Confidence 446677777765322222 223444555545544333333333322221 1 1 12233446788999988
Q ss_pred cCC--CCcEEeCceeeEEEecCC--C--cCeEEe-CCCc----eEEeccEEEEcCChh
Q 042352 257 KLP--FESILLNTRVLSIDFDEQ--N--MPNVRL-ANGE----TLKSEIGVILAVEEP 303 (445)
Q Consensus 257 ~l~--g~~i~~n~~V~~I~~~~~--~--~~~V~~-~~g~----~i~a~~~VV~a~~~~ 303 (445)
.|+ ||++++|++|+.|..+.+ . +..+.+ .+|+ .+..+|.|+++.+.-
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 886 999999999999987632 2 123333 4553 255677677766553
No 68
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.5e-10 Score=102.32 Aligned_cols=244 Identities=20% Similarity=0.278 Sum_probs=142.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC---------------------Ceeecccccc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD---------------------GFLLDRGFQI 103 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~---------------------g~~~d~G~~~ 103 (445)
|++.|||+|+|-|+.-..-+..|+..|.+|+.+|||+.-||-.+|.... .+.+|+-+..
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~ 80 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF 80 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence 3456999999999999999999999999999999999999988875311 1334444444
Q ss_pred hhccChhHHHhhcccCCc----ceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHH--hhhhhhhhhc
Q 042352 104 FITAYPEAQKLLDYNALN----LQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLI--GLTRIRVLIK 177 (445)
Q Consensus 104 ~~~~~~~~~~l~~~lgl~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 177 (445)
++.... +..++-+-++. ++. -++.+++-+|+++++|.. ....+.++.+.+.++-.. .+.......+
T Consensus 81 lmAn~~-Lvk~Li~T~V~~YL~fk~-i~gsfv~~~~k~~KVP~t------~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e 152 (440)
T KOG1439|consen 81 LMANGE-LVKILIHTGVTRYLEFKS-ISGSFVYKKGKIYKVPAT------EAEALTSPLMGLFEKRRVMKFLKFVLNYDE 152 (440)
T ss_pred hhccch-HHHHHHHhchhhheEEEe-ecceEEEECCeEEECCCC------HHHHhcCCccchhHHHHHHHHHHHHhhhhh
Confidence 443333 33333333432 222 235566777888877543 334455666666554321 1111111111
Q ss_pred chHH-Hhc--CCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCC------ccchHHHH--HHHHHHHhhcCCCccccCc
Q 042352 178 TDEQ-ILT--SSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDK------ELETSSRL--FDFIFKCLALGDNTIPANG 246 (445)
Q Consensus 178 ~~~~-~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~g~~~~~~gG 246 (445)
...+ +.. ....++.+++.+.++.......... .+ +++.++ ..+..-++ |...+..+......+|..|
T Consensus 153 ~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh-~~-al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yG 230 (440)
T KOG1439|consen 153 EDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIGH-AI-ALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYPLYG 230 (440)
T ss_pred hccccccccccccchHHHHHHHhcccccceeeeee-ee-EEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceecccC
Confidence 1111 111 2245899999888776654332211 11 122222 11221122 2222233333346799999
Q ss_pred cccHHHHHHhcCC--CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcC
Q 042352 247 ICQIPNQIASKLP--FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAV 300 (445)
Q Consensus 247 ~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~ 300 (445)
.+.|++.+++... |+++.+|.++.+|....++ +++|... ++...++ .||+-.
T Consensus 231 lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~-~~v~~~k-~vi~dp 285 (440)
T KOG1439|consen 231 LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSG-GEVAKCK-KVICDP 285 (440)
T ss_pred cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecC-Cceeecc-eEEecC
Confidence 9999999998664 9999999999999995443 3444433 2345565 355543
No 69
>PRK07236 hypothetical protein; Provisional
Probab=99.12 E-value=1.5e-09 Score=105.86 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhc
Q 042352 250 IPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLL 309 (445)
Q Consensus 250 l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll 309 (445)
+.+.|.+.+++++|+++++|++|+.++++ +.|++.+|++++++ .||.|-+.+.. .+.+
T Consensus 102 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad-~vIgADG~~S~vR~~l 160 (386)
T PRK07236 102 LYRALRAAFPAERYHLGETLVGFEQDGDR-VTARFADGRRETAD-LLVGADGGRSTVRAQL 160 (386)
T ss_pred HHHHHHHhCCCcEEEcCCEEEEEEecCCe-EEEEECCCCEEEeC-EEEECCCCCchHHHHh
Confidence 44455555556689999999999987655 67888999999998 79999887653 4433
No 70
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.11 E-value=3.9e-10 Score=99.58 Aligned_cols=49 Identities=29% Similarity=0.340 Sum_probs=35.0
Q ss_pred HHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 252 NQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 252 ~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
+.+++.. +.+|+++++|++|..++++ +.|++.++++++|+ +||+|++..
T Consensus 89 ~~~~~~~-~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~-~VVlAtG~~ 137 (203)
T PF13738_consen 89 QEYAERF-GLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRAD-RVVLATGHY 137 (203)
T ss_dssp HHHHHHT-TGGEETS--EEEEEEETTT-EEEEETTS-EEEEE-EEEE---SS
T ss_pred HHHHhhc-CcccccCCEEEEEEEeccE-EEEEEEecceeeee-eEEEeeecc
Confidence 3444444 6789999999999999877 99999999889998 799999964
No 71
>PLN02661 Putative thiazole synthesis
Probab=99.08 E-value=2.1e-09 Score=100.11 Aligned_cols=40 Identities=33% Similarity=0.537 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~~ 87 (445)
++||+|||||++||+||+.|+++ |++|+|+|++..+||..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 68999999999999999999986 89999999999998744
No 72
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.07 E-value=8.2e-09 Score=100.55 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=53.3
Q ss_pred cHHHHHHhcCC---CCcEEeCceeeEEEecCCCcCeEEeC-CCceEEeccEEEEcCChhH-HhhhcCCCcccCCCCCcce
Q 042352 249 QIPNQIASKLP---FESILLNTRVLSIDFDEQNMPNVRLA-NGETLKSEIGVILAVEEPE-ADKLLRQPVKFQRKPARST 323 (445)
Q Consensus 249 ~l~~~l~~~l~---g~~i~~n~~V~~I~~~~~~~~~V~~~-~g~~i~a~~~VV~a~~~~~-~~~ll~~p~~~~~~~~~~~ 323 (445)
.+.+.|.+.+. +++++.+++|+.++.+++.+ .|++. +|++++|+ .||-|-+.+. +.+.++.............
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v-~v~l~~dG~~~~a~-llVgADG~~S~vR~~~~~~~~~~~~y~~~~ 182 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGV-TVTLSFDGETLDAD-LLVGADGANSAVRRAAGIAEFSGRDYGQTA 182 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCce-EEEEcCCCcEEecC-EEEECCCCchHHHHhcCCCCccCCCCCceE
Confidence 44555555552 58999999999999998764 48888 99999998 5777777765 4666662111111334444
Q ss_pred EEEEEeec
Q 042352 324 VCLYFSAD 331 (445)
Q Consensus 324 ~~v~~~~~ 331 (445)
+.+.+..+
T Consensus 183 l~~~~~~~ 190 (387)
T COG0654 183 LVANVEPE 190 (387)
T ss_pred EEEEeecC
Confidence 55555443
No 73
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.06 E-value=8.7e-10 Score=107.75 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=40.0
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR 310 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~ 310 (445)
|++++.+++|++|+.++++ +.|++.+|++++++ .||.|.+.+. +.+.++
T Consensus 127 gv~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~-~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 127 GVQLHCPARVVALEQDADR-VRLRLDDGRRLEAA-LAIAADGAASTLRELAG 176 (392)
T ss_pred CCEEEcCCeEEEEEecCCe-EEEEECCCCEEEeC-EEEEecCCCchHHHhhc
Confidence 8999999999999987765 56888888889998 7999998875 344543
No 74
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.06 E-value=1e-08 Score=100.38 Aligned_cols=42 Identities=31% Similarity=0.463 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+.+||+|||||++|+.+|..++.+|++|+++|+++...|..+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 779999999999999999999999999999999999888554
No 75
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.06 E-value=7.8e-10 Score=111.10 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=38.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
|++.+||+|||||++|+++|+.|+++|++|+|+||++..+|-.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 3467999999999999999999999999999999998766644
No 76
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.06 E-value=5.1e-08 Score=91.30 Aligned_cols=37 Identities=41% Similarity=0.478 Sum_probs=34.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
+||+|||||++||++|+.|++.|.+|+|+|++..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999887654
No 77
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.06 E-value=1.2e-09 Score=107.69 Aligned_cols=40 Identities=33% Similarity=0.541 Sum_probs=37.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
+.+||+|||||++|++||+.|+++|++|+|+||.+.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999999888754
No 78
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.04 E-value=1.2e-09 Score=109.90 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=37.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
|+.++||+|||||++|+++|+.|+++|++|+|+||++..+|
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 45679999999999999999999999999999999976555
No 79
>PRK06847 hypothetical protein; Provisional
Probab=99.04 E-value=1.1e-09 Score=106.48 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=37.9
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~ 305 (445)
|++|+++++|++|+.++++ +.|++.+|+++.++ .||.|.+.+..
T Consensus 121 gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad-~vI~AdG~~s~ 164 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYD-LVVGADGLYSK 164 (375)
T ss_pred CCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcC-EEEECcCCCcc
Confidence 8899999999999887655 67888899889998 79999998753
No 80
>PRK06184 hypothetical protein; Provisional
Probab=99.02 E-value=1.6e-09 Score=109.34 Aligned_cols=57 Identities=28% Similarity=0.424 Sum_probs=45.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc--ceeeeccCCeeecccccchhccChhHHHhhcccCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG--RVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL 120 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG--~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl 120 (445)
+++||+|||||++||++|..|++.|++|+|+||++.+.- ++. ...+...++++++|+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~-----------------~l~~~~~e~l~~lGl 60 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGK-----------------GIQPRTQEVFDDLGV 60 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccce-----------------eecHHHHHHHHHcCc
Confidence 568999999999999999999999999999999876531 111 124667777887775
No 81
>PRK07588 hypothetical protein; Provisional
Probab=99.02 E-value=1e-09 Score=107.26 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=42.2
Q ss_pred HHHHhcCC-CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhc
Q 042352 252 NQIASKLP-FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLL 309 (445)
Q Consensus 252 ~~l~~~l~-g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll 309 (445)
+.|.+.++ +++|+++++|++|+.++++ +.|++++|++++++ .||.|.+.+.. .+.+
T Consensus 107 ~~L~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~d-~vIgADG~~S~vR~~~ 164 (391)
T PRK07588 107 AAIYTAIDGQVETIFDDSIATIDEHRDG-VRVTFERGTPRDFD-LVIGADGLHSHVRRLV 164 (391)
T ss_pred HHHHHhhhcCeEEEeCCEEeEEEECCCe-EEEEECCCCEEEeC-EEEECCCCCccchhhc
Confidence 33333333 6899999999999988765 66888999889997 79999888653 4443
No 82
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.01 E-value=1.4e-09 Score=107.35 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=42.4
Q ss_pred ccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeC---CCc--eEEeccEEEEcCChhHH
Q 042352 246 GICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLA---NGE--TLKSEIGVILAVEEPEA 305 (445)
Q Consensus 246 G~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~---~g~--~i~a~~~VV~a~~~~~~ 305 (445)
+-..+.+.|.+.++ |++|+++++|++|..+++++++|... +|+ +++|+ .||+|++-...
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEES-EEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeee-EEEeccCcccc
Confidence 33456666666553 89999999999999998888888876 454 48898 89999998664
No 83
>PRK06753 hypothetical protein; Provisional
Probab=99.01 E-value=2.2e-09 Score=104.25 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=44.6
Q ss_pred cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352 249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR 310 (445)
Q Consensus 249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~ 310 (445)
.+.+.|.+.+++.+|+++++|++|+.++++ +.|++.+|++++++ .||-|-+.+. +.+.+.
T Consensus 99 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~~-~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 99 TLIDIIKSYVKEDAIFTGKEVTKIENETDK-VTIHFADGESEAFD-LCIGADGIHSKVRQSVN 159 (373)
T ss_pred HHHHHHHHhCCCceEEECCEEEEEEecCCc-EEEEECCCCEEecC-EEEECCCcchHHHHHhC
Confidence 445555555555689999999999877654 77888899889997 6888888765 455544
No 84
>PRK06834 hypothetical protein; Provisional
Probab=99.00 E-value=2.6e-09 Score=106.73 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=39.9
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR 310 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~ 310 (445)
|++|+.+++|++|+.++++ +.|++.+|++++++ .||.|.+.+.. .+.++
T Consensus 114 gv~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~a~-~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTG-VDVELSDGRTLRAQ-YLVGCDGGRSLVRKAAG 163 (488)
T ss_pred CCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeC-EEEEecCCCCCcHhhcC
Confidence 8999999999999988765 66777888889998 69999988763 44553
No 85
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.00 E-value=1.1e-09 Score=106.79 Aligned_cols=36 Identities=39% Similarity=0.661 Sum_probs=33.9
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 52 IVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 52 iIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
+|||||++||+||+.|+++|++|+|+||++.+|+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~ 36 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKL 36 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence 699999999999999999999999999999998754
No 86
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.99 E-value=1.6e-09 Score=106.43 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=43.6
Q ss_pred HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352 250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR 310 (445)
Q Consensus 250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~ 310 (445)
+.+.|.+.+. |++++.+++|++|+.++++ +.|++.+|++++++ .||.|.+.+. +.+.++
T Consensus 113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad-~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRDEG-VTVTLSDGSVLEAR-LLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEECCCCEEEeC-EEEEcCCCChHHHHHcC
Confidence 3444444332 8999999999999887765 66888889889998 7999988865 344443
No 87
>PRK09126 hypothetical protein; Provisional
Probab=98.99 E-value=7.9e-10 Score=108.12 Aligned_cols=49 Identities=27% Similarity=0.307 Sum_probs=39.7
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR 310 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~ 310 (445)
|++|+.+++|++++.+++. +.|++.+|++++|+ .||.|.+... +.+.++
T Consensus 125 g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~-~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 125 GIELLTGTRVTAVRTDDDG-AQVTLANGRRLTAR-LLVAADSRFSATRRQLG 174 (392)
T ss_pred CcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeC-EEEEeCCCCchhhHhcC
Confidence 8999999999999887654 67888889889998 6999998864 445553
No 88
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.98 E-value=3.6e-09 Score=104.30 Aligned_cols=43 Identities=33% Similarity=0.456 Sum_probs=37.7
Q ss_pred ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
+++.+...+||+|||||++||++|..|++.|++|+|+|+++..
T Consensus 11 ~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 11 LPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 3444556799999999999999999999999999999998764
No 89
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.98 E-value=1.6e-08 Score=102.60 Aligned_cols=42 Identities=33% Similarity=0.590 Sum_probs=38.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...+||+|||+| +|++||..+++.|.+|+|+||.+.+||.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 347999999999 899999999999999999999999999654
No 90
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.97 E-value=3.9e-09 Score=103.62 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=41.5
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~ 311 (445)
|++|+.+++|++|+.++++ +.|++.+|++++|+ .||.|.+.+. +.++++.
T Consensus 126 gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~-~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 126 DIGLLANARLEQMRRSGDD-WLLTLADGRQLRAP-LVVAADGANSAVRRLAGC 176 (405)
T ss_pred CCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeC-EEEEecCCCchhHHhcCC
Confidence 8999999999999988765 67888899889998 6999999876 4566654
No 91
>PRK07190 hypothetical protein; Provisional
Probab=98.97 E-value=8.2e-09 Score=103.07 Aligned_cols=50 Identities=24% Similarity=0.225 Sum_probs=40.5
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~ 311 (445)
|++|+.+++|++|+.++++ +.+.+.+|++++|+ .||.|.+.... .+.++-
T Consensus 123 Gv~v~~~~~v~~l~~~~~~-v~v~~~~g~~v~a~-~vVgADG~~S~vR~~lgi 173 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAG-CLTTLSNGERIQSR-YVIGADGSRSFVRNHFNV 173 (487)
T ss_pred CCEEEeCCEEEEEEEcCCe-eEEEECCCcEEEeC-EEEECCCCCHHHHHHcCC
Confidence 8999999999999988766 55677788889998 69999998764 555543
No 92
>PRK07045 putative monooxygenase; Reviewed
Probab=98.96 E-value=7.3e-09 Score=101.11 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=39.4
Q ss_pred CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhH-Hhhh
Q 042352 260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPE-ADKL 308 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~l 308 (445)
|++++++++|+.|+.++++ ++.|++.+|++++++ .||.|.+... +.+.
T Consensus 121 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~-~vIgADG~~S~vR~~ 170 (388)
T PRK07045 121 NVRLRFETSIERIERDADGTVTSVTLSDGERVAPT-VLVGADGARSMIRDD 170 (388)
T ss_pred CeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECC-EEEECCCCChHHHHH
Confidence 7899999999999987665 357888899889998 6888888876 4553
No 93
>PRK05868 hypothetical protein; Validated
Probab=98.96 E-value=6.7e-09 Score=100.52 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=43.5
Q ss_pred HHHHHhcCC-CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352 251 PNQIASKLP-FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ 311 (445)
Q Consensus 251 ~~~l~~~l~-g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~ 311 (445)
.+.|.+.+. |++++++++|++|+.++++ +.|+++||++++++ .||-|-+.+. +.+.+..
T Consensus 108 ~~~l~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~ad-lvIgADG~~S~vR~~~~~ 168 (372)
T PRK05868 108 VELLYGATQPSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFD-LVIGADGLHSNVRRLVFG 168 (372)
T ss_pred HHHHHHhccCCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeC-EEEECCCCCchHHHHhcC
Confidence 333433333 8899999999999876544 77889999999998 6888888765 4555544
No 94
>PRK07121 hypothetical protein; Validated
Probab=98.96 E-value=1.7e-08 Score=101.39 Aligned_cols=41 Identities=32% Similarity=0.526 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||+.++++|.+|+|+||....||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 46899999999999999999999999999999999988854
No 95
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.95 E-value=2e-09 Score=104.95 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=42.9
Q ss_pred HHHHHHhcCC--C-CcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352 250 IPNQIASKLP--F-ESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR 310 (445)
Q Consensus 250 l~~~l~~~l~--g-~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~ 310 (445)
+.+.|.+.+. | ++|+.+++|++|+.++++ +.|++.+|++++++ .||.|.+.+. +.+.+.
T Consensus 108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~-~vi~adG~~S~vr~~l~ 170 (385)
T TIGR01988 108 LQQALWERLQEYPNVTLLCPARVVELPRHSDH-VELTLDDGQQLRAR-LLVGADGANSKVRQLAG 170 (385)
T ss_pred HHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-eEEEECCCCEEEee-EEEEeCCCCCHHHHHcC
Confidence 3444444332 4 899999999999887755 67888899889998 6888888764 344443
No 96
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.95 E-value=3.7e-09 Score=103.79 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=40.6
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~ 311 (445)
|++++++++|++|+.++++ +.|++.+|++++|+ .||.|.+... +.+.+..
T Consensus 126 ~v~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~-lvIgADG~~S~vR~~~~~ 176 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESE-AWLTLDNGQALTAK-LVVGADGANSWLRRQMDI 176 (405)
T ss_pred CeEEEcCCeeEEEEeeCCe-EEEEECCCCEEEeC-EEEEeCCCCChhHHHcCC
Confidence 7899999999999887655 67888899999998 7999998865 4555544
No 97
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.95 E-value=4.8e-09 Score=104.78 Aligned_cols=41 Identities=34% Similarity=0.458 Sum_probs=36.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGGR 86 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~-~~~GG~ 86 (445)
+..+||+|||||++|+.||+.+++.|.+|+++|++ +.+|+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 45699999999999999999999999999999997 466653
No 98
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.94 E-value=5.8e-09 Score=102.67 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=47.3
Q ss_pred cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhc
Q 042352 249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLL 309 (445)
Q Consensus 249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll 309 (445)
.+.+.|.+.++++.++++++|++|+.++++ +.|++++|++++++ .||.|.+.+.. .+.+
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad-~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCD-LLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEecCCc-EEEEEcCCCEEEee-EEEECCCccHHHHHHh
Confidence 566777777766679999999999987665 77888899889998 79999999874 4444
No 99
>PRK08013 oxidoreductase; Provisional
Probab=98.94 E-value=3e-09 Score=104.15 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=40.3
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~ 311 (445)
|++++++++|++|+.++++ +.|++.+|++++|+ .||-|-+.+. +.+.+.-
T Consensus 126 ~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~-lvVgADG~~S~vR~~~~~ 176 (400)
T PRK08013 126 DITLLAPAELQQVAWGENE-AFLTLKDGSMLTAR-LVVGADGANSWLRNKADI 176 (400)
T ss_pred CcEEEcCCeeEEEEecCCe-EEEEEcCCCEEEee-EEEEeCCCCcHHHHHcCC
Confidence 7899999999999887765 67888899999998 6888888765 4555544
No 100
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.94 E-value=8.7e-09 Score=100.91 Aligned_cols=38 Identities=39% Similarity=0.658 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
...||+|||||++||++|..|++.|++|+|+||++.++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 45799999999999999999999999999999987653
No 101
>PRK06116 glutathione reductase; Validated
Probab=98.94 E-value=3.7e-09 Score=105.17 Aligned_cols=42 Identities=36% Similarity=0.567 Sum_probs=38.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+.+|||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 35699999999999999999999999999999985 8899764
No 102
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.91 E-value=2.4e-08 Score=101.45 Aligned_cols=41 Identities=32% Similarity=0.512 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
.++||+|||+|.+||+||..|+++|.+|+|||+....||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 36899999999999999999999999999999998888854
No 103
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.91 E-value=8.6e-09 Score=100.58 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=45.3
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
.+..+|+...+ |+.|..||+|++|....++..+|+|..| .+++. +||.|++.|.
T Consensus 188 ~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~-~~VNaaGvWA 243 (856)
T KOG2844|consen 188 GLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETE-CVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecc-eEEechhHHH
Confidence 34455554443 9999999999999999888889999999 58998 6999999997
No 104
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.91 E-value=6e-09 Score=102.59 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
..+||+|||+|.+||+||..++ +|.+|+|+||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999974 79999999999887774
No 105
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.91 E-value=6.7e-09 Score=101.15 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=40.6
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR 310 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~ 310 (445)
+++++.+++|++++.++++ +.|++++|++++++ .||.|.+.+.. .+.+.
T Consensus 125 ~i~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~~~-lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEG-NRVTLESGAEIEAK-WVIGADGANSQVRQLAG 174 (384)
T ss_pred CeEEECCCceeEEEEcCCe-EEEEECCCCEEEee-EEEEecCCCchhHHhcC
Confidence 7899999999999988765 67889999999998 79999998764 44443
No 106
>PRK10015 oxidoreductase; Provisional
Probab=98.91 E-value=1.3e-08 Score=100.25 Aligned_cols=39 Identities=36% Similarity=0.516 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
.++||+|||||++|++||+.|+++|++|+|+||.+.+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 469999999999999999999999999999999988764
No 107
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.91 E-value=6.5e-09 Score=101.51 Aligned_cols=38 Identities=34% Similarity=0.494 Sum_probs=34.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
++.+||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 45689999999999999999999999999999998754
No 108
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.89 E-value=5.2e-07 Score=87.38 Aligned_cols=126 Identities=20% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQE 339 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~ 339 (445)
++.++++++|++|+.+++. +.|++.+|++++|+ .||-|.++... ... ..-.....-+.+.++++.+....
T Consensus 100 ~~~~~~~~~V~~i~~~~~~-~~v~~~~g~~i~a~-~VvDa~g~~~~----~~~----~~~~Q~f~G~~v~~~~~~f~~~~ 169 (374)
T PF05834_consen 100 GGVIRLNARVTSIEETGDG-VLVVLADGRTIRAR-VVVDARGPSSP----KAR----PLGLQHFYGWEVETDEPVFDPDT 169 (374)
T ss_pred CCeEEEccEEEEEEecCce-EEEEECCCCEEEee-EEEECCCcccc----ccc----ccccceeEEEEEeccCCCCCCCc
Confidence 5689999999999998864 77889999999998 69888885432 110 01122233334455555222222
Q ss_pred CeEE-ec-CCC-CcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHHhHhCC
Q 042352 340 PVLF-LN-GSG-KGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGK 403 (445)
Q Consensus 340 ~~~~-~~-~~~-~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~ 403 (445)
..+. +. ... .++...+..|-. +++.+++..........+.+++.+.+.+-|++ .+.
T Consensus 170 ~~lMD~r~~~~~~~~~F~Y~lP~~-------~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~-~g~ 228 (374)
T PF05834_consen 170 ATLMDFRVPQSADGPSFLYVLPFS-------EDRALVEETSFSPRPALPEEELKARLRRYLER-LGI 228 (374)
T ss_pred eEEEEecccCCCCCceEEEEEEcC-------CCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHH-cCC
Confidence 2221 11 000 112222333321 24456654333433446788888888888888 443
No 109
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.89 E-value=9.9e-09 Score=99.60 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=47.1
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCc--eEEeccEEEEcCChhHHhhhcCCC
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGE--TLKSEIGVILAVEEPEADKLLRQP 312 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~--~i~a~~~VV~a~~~~~~~~ll~~p 312 (445)
.+.+.|.+.+. |++|+++++|++++.+++++..+.+.+|+ .++++ .||+|++......|..+.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD-~VVLAtGrf~s~GL~a~~ 326 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRAR-HFVLATGSFFSGGLVAER 326 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECC-EEEEeCCCcccCceeccC
Confidence 56777776663 99999999999999877665555555553 48898 799999987666666553
No 110
>PLN02697 lycopene epsilon cyclase
Probab=98.89 E-value=9e-07 Score=88.55 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+||+|||||++||++|..|++.|++|+|+|+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 4689999999999999999999999999999975
No 111
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.88 E-value=1.4e-08 Score=99.22 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+||+|||||++||++|+.|++.|++|+|+|++....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 45899999999999999999999999999999987753
No 112
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.88 E-value=1.7e-08 Score=103.12 Aligned_cols=41 Identities=37% Similarity=0.535 Sum_probs=38.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.+||+|||||++||+||+.++++|.+|+|+||....||.+.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 68999999999999999999999999999999999998764
No 113
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.87 E-value=7e-09 Score=101.04 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=40.9
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~ 311 (445)
|++++.+++|++|+.++++ +.|++.+|++++|+ .||.|.+.+. +.+.+..
T Consensus 120 gv~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad-~vV~AdG~~S~vr~~l~~ 170 (382)
T TIGR01984 120 NIQLYCPARYKEIIRNQDY-VRVTLDNGQQLRAK-LLIAADGANSKVRELLSI 170 (382)
T ss_pred CcEEEcCCeEEEEEEcCCe-EEEEECCCCEEEee-EEEEecCCChHHHHHcCC
Confidence 7899999999999887665 67888888889998 7999999875 4555544
No 114
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.87 E-value=3e-08 Score=100.88 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=35.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
+..+||+|||||++||++|..|++.|++|+|+||+..++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456899999999999999999999999999999997654
No 115
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.86 E-value=2.1e-09 Score=105.81 Aligned_cols=39 Identities=36% Similarity=0.575 Sum_probs=33.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
||+|||||++|++||..+++.|.+|+|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 899999999999999999999999999999999999764
No 116
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=1.2e-08 Score=105.04 Aligned_cols=39 Identities=38% Similarity=0.456 Sum_probs=35.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+||+|||||++||+||..+++.|.+|+|+|+...+|+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 368999999999999999999999999999999877764
No 117
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.86 E-value=2.4e-08 Score=96.96 Aligned_cols=44 Identities=43% Similarity=0.600 Sum_probs=40.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
+...+|+|||||+|||++|..|.+.|++|+|+||.+.+||....
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 34679999999999999999999999999999999999996654
No 118
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.86 E-value=1.7e-08 Score=100.13 Aligned_cols=38 Identities=42% Similarity=0.694 Sum_probs=36.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCcce
Q 042352 50 RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRV 87 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG~~ 87 (445)
||+|||||++||+||+.++++| .+|+|+||.+..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999988854
No 119
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.86 E-value=4.2e-08 Score=95.87 Aligned_cols=35 Identities=40% Similarity=0.538 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999874
No 120
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.86 E-value=2.5e-08 Score=102.33 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
..+||+|||||++||+||..++++|.+|+|+||....||.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 4589999999999999999999999999999998877763
No 121
>PRK06185 hypothetical protein; Provisional
Probab=98.85 E-value=2.6e-08 Score=97.91 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 468999999999999999999999999999999754
No 122
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.85 E-value=9.1e-09 Score=100.75 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-HhhhcC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLLR 310 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~ 310 (445)
|++++.+++|++|..++++ +.|++.+|++++++ .||.|.+.+. +.+.++
T Consensus 127 g~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~-~vI~AdG~~S~vr~~~~ 176 (395)
T PRK05732 127 GVTLHCPARVANVERTQGS-VRVTLDDGETLTGR-LLVAADGSHSALREALG 176 (395)
T ss_pred CcEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeC-EEEEecCCChhhHHhhC
Confidence 7899999999999877655 66888888889998 6999999875 344443
No 123
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.84 E-value=1.1e-08 Score=101.05 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=43.3
Q ss_pred ccCccccHHHHHHhcCC--CCcEEeCceeeEEEec--CCCcCeEEeCC-CceEEeccEEEEcCCh
Q 042352 243 PANGICQIPNQIASKLP--FESILLNTRVLSIDFD--EQNMPNVRLAN-GETLKSEIGVILAVEE 302 (445)
Q Consensus 243 ~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~--~~~~~~V~~~~-g~~i~a~~~VV~a~~~ 302 (445)
+.++...+.+.|.+.++ |++|+++++|++|..+ ++.+++|...+ +.+++|+ .||+|++-
T Consensus 118 ~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak-~VIlAtGG 181 (432)
T TIGR02485 118 LRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQ-ALVLAAGG 181 (432)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcC-EEEEcCCC
Confidence 33455567777766554 9999999999999876 34556666543 3478897 79999995
No 124
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.83 E-value=5.1e-08 Score=99.18 Aligned_cols=42 Identities=43% Similarity=0.718 Sum_probs=38.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--CCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD--AVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~--~~GG~~~ 88 (445)
..+||+|||+|.+||+||..+++.|.+|+||||.+ ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 7888653
No 125
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.83 E-value=7.9e-08 Score=80.72 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=33.7
Q ss_pred CCcEE-eCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCCh
Q 042352 260 FESIL-LNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEE 302 (445)
Q Consensus 260 g~~i~-~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~ 302 (445)
|++|. .+.+|+.|...+++ +.|.+.+|..+.++ +||+|++.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d-~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRAD-AVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeC-EEEECCCC
Confidence 54554 56799999998876 78889999999998 79999974
No 126
>PRK12839 hypothetical protein; Provisional
Probab=98.83 E-value=8.3e-08 Score=97.62 Aligned_cols=42 Identities=29% Similarity=0.505 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||+|.+||+||+.|+++|.+|+|+|+...+||.+.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 468999999999999999999999999999999999999765
No 127
>PRK11445 putative oxidoreductase; Provisional
Probab=98.83 E-value=3.3e-08 Score=94.96 Aligned_cols=62 Identities=26% Similarity=0.290 Sum_probs=44.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN 121 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 121 (445)
++||+|||||++|+++|..|++. ++|+|+|+++..+-.-... ..|. ...+...++++++|+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~-------~~g~----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSK-------PCGG----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccC-------cCcC----ccCHHHHHHHHHcCCC
Confidence 37999999999999999999999 9999999987643110000 1111 1245677778877764
No 128
>PLN02463 lycopene beta cyclase
Probab=98.83 E-value=5.3e-08 Score=95.70 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 3468999999999999999999999999999998653
No 129
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.82 E-value=8.1e-08 Score=97.97 Aligned_cols=38 Identities=45% Similarity=0.707 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
+..+||+|||||++||++|+.|++.|++|+|+||++.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 45689999999999999999999999999999998754
No 130
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.82 E-value=3.9e-08 Score=96.14 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=40.1
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR 310 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~ 310 (445)
|++++.+++|++|+.++++ +.|++.+|++++|+ .||.|.+.+.. .+.++
T Consensus 127 gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~-~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 127 NVTLRCPASLQALQRDDDG-WELTLADGEEIQAK-LVIGADGANSQVRQMAG 176 (391)
T ss_pred CcEEEcCCeeEEEEEcCCe-EEEEECCCCEEEeC-EEEEeCCCCchhHHHcC
Confidence 8899999999999877655 67888888889998 79999998763 45554
No 131
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=3.5e-08 Score=100.75 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
..+||+|||||.+||+||..+++.|.+|+|+||....||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 3589999999999999999999999999999999887764
No 132
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.82 E-value=6.1e-08 Score=98.59 Aligned_cols=42 Identities=31% Similarity=0.508 Sum_probs=38.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||+|.+|++||..++++|.+|+||||....||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 468999999999999999999999999999999998888543
No 133
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.81 E-value=2.5e-08 Score=95.68 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=48.9
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCC--ceEEeccEEEEcCChhHHhhhcCC
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANG--ETLKSEIGVILAVEEPEADKLLRQ 311 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g--~~i~a~~~VV~a~~~~~~~~ll~~ 311 (445)
.+.++|.+.++ |++|+.+++|++|..+++++..|.+.++ ..++|+ +||+|++.|....|+.+
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD-~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRAD-HFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECC-EEEEccCCCcCHHHHhh
Confidence 44555555553 9999999999999998887777887776 379998 79999999976667655
No 134
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.80 E-value=7.5e-08 Score=98.38 Aligned_cols=42 Identities=40% Similarity=0.529 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||+|.+|++||+.++++|++|+|+|+++.+||.+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 468999999999999999999999999999999999999664
No 135
>PRK09897 hypothetical protein; Provisional
Probab=98.80 E-value=5.5e-08 Score=97.11 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=35.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCC-cceee
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVG-GRVRT 89 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~G-G~~~s 89 (445)
++|+|||||++|+++|..|.+.+ .+|+|+|++..+| |.+.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 58999999999999999999874 5899999998888 55443
No 136
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.80 E-value=7.5e-08 Score=90.43 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=34.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
+||+|||||++||+||..|++.|++|+|+|+++ +||++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~ 38 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQL 38 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence 689999999999999999999999999999876 67644
No 137
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.79 E-value=1.2e-07 Score=92.34 Aligned_cols=35 Identities=40% Similarity=0.562 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999999874
No 138
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.79 E-value=4.6e-08 Score=100.05 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=35.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
||+|||||++||+||..++++|.+|+|+||....||.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999998877644
No 139
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=4.9e-08 Score=99.96 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=36.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
..+||+|||||++||+||..+++.|.+|+|+||....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4689999999999999999999999999999998776663
No 140
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.79 E-value=1.4e-07 Score=96.33 Aligned_cols=41 Identities=32% Similarity=0.543 Sum_probs=38.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
...+||+|||+|++||+||+.++++|.+|+||||....||.
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 35689999999999999999999999999999999988884
No 141
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.79 E-value=5.5e-08 Score=97.56 Aligned_cols=39 Identities=41% Similarity=0.622 Sum_probs=35.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
.+||+|||||++||+||..+++.|. |+|+||.+..||.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s 40 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS 40 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence 4799999999999999999999998 99999998877743
No 142
>PRK06126 hypothetical protein; Provisional
Probab=98.79 E-value=2.1e-08 Score=102.29 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...+||+|||||++||++|..|+++|++|+|+||++.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3468999999999999999999999999999998754
No 143
>PRK08244 hypothetical protein; Provisional
Probab=98.79 E-value=3.2e-08 Score=99.67 Aligned_cols=56 Identities=30% Similarity=0.445 Sum_probs=44.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC--cceeeeccCCeeecccccchhccChhHHHhhcccCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG--GRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL 120 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G--G~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl 120 (445)
++||+|||||++||++|..|++.|++|+|+||++... |++ ...++...++++++|+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra-----------------~~l~~~~~e~l~~lGl 59 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKA-----------------LTLHPRTLEILDMRGL 59 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce-----------------eEecHHHHHHHHhcCc
Confidence 3799999999999999999999999999999986531 111 1235667778887776
No 144
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.6e-07 Score=83.60 Aligned_cols=241 Identities=15% Similarity=0.203 Sum_probs=131.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC--------------------Ceeecccccchhc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD--------------------GFLLDRGFQIFIT 106 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------------------g~~~d~G~~~~~~ 106 (445)
+.+||+|+|.|+--..-+..|+..|.+|+++|+|+.-|+-.++.... .+.+|+-+..++.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A 84 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFA 84 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcc
Confidence 46999999999999999999999999999999999999988875211 1344555554444
Q ss_pred cChhHHHhhcccCCc----ceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHH-hhhhh-hhhhcchH
Q 042352 107 AYPEAQKLLDYNALN----LQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLI-GLTRI-RVLIKTDE 180 (445)
Q Consensus 107 ~~~~~~~l~~~lgl~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 180 (445)
... +..++.+-++. +++. ++.+++-++++++++. +....+.++.+++..+-.. .+..+ ........
T Consensus 85 ~s~-l~~iLi~t~v~~YLefk~i-~~~~~~~~~k~~kVP~------ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~~~~ 156 (434)
T COG5044 85 NSE-LLKILIETGVTEYLEFKQI-SGSFLYRPGKIYKVPY------NEAEIFTSPLLSLFEKRRVMRFLKWVSNYAEQKS 156 (434)
T ss_pred cch-HHHHHHHhChHhheeeeec-cccEEecCCcEEECCc------cHHhhhcCCCcchhhHHHHHHHHHHHHhHHhhhh
Confidence 333 33333333432 2221 2345556677777753 3333445555555554321 11111 11111000
Q ss_pred HHhc--CCCCcHHHHHHHcCCCHHHHHHhhhhhhccc-ccCCccchHHHHHHHH--HHHhhcCCCccccCccccHHHHHH
Q 042352 181 QILT--SSEVPIIELLRNIGFSDSIIDSFFRPFFGGI-FFDKELETSSRLFDFI--FKCLALGDNTIPANGICQIPNQIA 255 (445)
Q Consensus 181 ~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~gG~~~l~~~l~ 255 (445)
.+.. .+..++....+..+++.+..+.+...++-.+ ...+..+..-++...+ +..+......+|..|.+.|.+.++
T Consensus 157 ~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ldl~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~El~QGFa 236 (434)
T COG5044 157 TLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLDLDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGELSQGFA 236 (434)
T ss_pred hchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhccccCCchHHHHHHHHHHHhhcccCCCcceeeccCchhhhHHHH
Confidence 1111 1122333334446665543333322221111 1111222222222222 122223357789999999999999
Q ss_pred hcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEE
Q 042352 256 SKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVIL 298 (445)
Q Consensus 256 ~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~ 298 (445)
+... |+++.+|+++.+|....+ +-+|.. ++.+..|.+ ||.
T Consensus 237 Rssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~K-iI~ 278 (434)
T COG5044 237 RSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGK-IIS 278 (434)
T ss_pred HhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCc-ccC
Confidence 8664 999999999999988764 212222 233567764 443
No 145
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=7.1e-08 Score=99.26 Aligned_cols=51 Identities=27% Similarity=0.225 Sum_probs=40.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDR 99 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~ 99 (445)
.+||+|||||++||+||..+++.|.+|+|+||....||. +....+|.....
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~-s~~a~Ggi~a~~ 58 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH-TVMAEGGCAAAM 58 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc-ceecCccceeec
Confidence 589999999999999999999999999999999876653 333334444433
No 146
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.77 E-value=6.2e-08 Score=99.43 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=37.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||..++++|.+|+|+||....||.+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t 68 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT 68 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence 46899999999999999999999999999999988877643
No 147
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=4.4e-08 Score=100.09 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=35.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~ 86 (445)
..+||+|||||++||+||..+++. |.+|+|+||....||.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 457999999999999999999987 4899999998877763
No 148
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=1.5e-07 Score=95.69 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA-VGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~-~GG~ 86 (445)
..+||+|||||.+||+||..+ +.|.+|+|+||... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 357999999999999999999 89999999999865 4443
No 149
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=1.4e-07 Score=96.57 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=36.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG---RPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G---~~V~vlE~~~~~GG~~ 87 (445)
.+||+|||||++||+||..+++.| .+|+|+||....||.+
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 579999999999999999999998 8999999998877743
No 150
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.74 E-value=4.1e-08 Score=96.19 Aligned_cols=35 Identities=31% Similarity=0.595 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
.+|+|||||++||++|..|+++|++|+|+|+.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 58999999999999999999999999999998654
No 151
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.73 E-value=5.8e-08 Score=96.73 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+||+|||||++||+||..++++|.+|+|+||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999975
No 152
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=8.9e-08 Score=97.94 Aligned_cols=41 Identities=27% Similarity=0.398 Sum_probs=37.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||.+||+||..+++.|.+|+|+||....||.+
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 46899999999999999999999999999999987777644
No 153
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.72 E-value=2.4e-07 Score=94.73 Aligned_cols=43 Identities=33% Similarity=0.510 Sum_probs=39.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...+||+|||+|.+|++||+.++++|++|+|||+++..||.+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 3468999999999999999999999999999999999998664
No 154
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.72 E-value=6.5e-08 Score=93.84 Aligned_cols=49 Identities=6% Similarity=0.074 Sum_probs=38.1
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~ 311 (445)
+++++.+++|++|..++++ +.|.+.++ +++|+ .||-|-+.+.. .+.+..
T Consensus 119 ~v~~~~~~~v~~i~~~~~~-v~v~~~~~-~~~ad-lvIgADG~~S~vR~~l~~ 168 (374)
T PRK06617 119 LITLIDNNQYQEVISHNDY-SIIKFDDK-QIKCN-LLIICDGANSKVRSHYFA 168 (374)
T ss_pred CcEEECCCeEEEEEEcCCe-EEEEEcCC-EEeeC-EEEEeCCCCchhHHhcCC
Confidence 4789999999999887765 66888776 89998 79988888753 455544
No 155
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.72 E-value=1.6e-08 Score=95.75 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=35.2
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCCh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEE 302 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~ 302 (445)
+.+|. +.+|++|..+++++++|.+.+|+.+.++ .||+|++.
T Consensus 110 nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~-~vVlaTGt 150 (392)
T PF01134_consen 110 NLTII-QGEVTDLIVENGKVKGVVTKDGEEIEAD-AVVLATGT 150 (392)
T ss_dssp TEEEE-ES-EEEEEECTTEEEEEEETTSEEEEEC-EEEE-TTT
T ss_pred CeEEE-EcccceEEecCCeEEEEEeCCCCEEecC-EEEEeccc
Confidence 66774 6899999999989999999999999998 79999999
No 156
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.72 E-value=6e-08 Score=98.64 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=42.6
Q ss_pred cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352 249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~ 305 (445)
.+.+.|.+.++...++.+++|++|+.++++ +.|++.+|++++++ .||.|-+.+..
T Consensus 195 ~L~~~L~~alg~~~i~~g~~V~~I~~~~d~-VtV~~~dG~ti~aD-lVVGADG~~S~ 249 (668)
T PLN02927 195 TLQQILARAVGEDVIRNESNVVDFEDSGDK-VTVVLENGQRYEGD-LLVGADGIWSK 249 (668)
T ss_pred HHHHHHHhhCCCCEEEcCCEEEEEEEeCCE-EEEEECCCCEEEcC-EEEECCCCCcH
Confidence 456666666643347889999999987765 66888999889998 79999998763
No 157
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.72 E-value=2.2e-08 Score=98.87 Aligned_cols=69 Identities=26% Similarity=0.184 Sum_probs=48.6
Q ss_pred cccccccccccCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 9 SLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+.|.+++...-+..|+.-.+...++....+ ....++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 4 VSSFLPSAPSSAAKSVSRPGLRVLAAAASKK----LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred ccccccccccccccccccccceeeecCCCCC----cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4445555555556666664444444332222 22346999999999999999999999999999999974
No 158
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.71 E-value=1.8e-07 Score=94.62 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=35.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
...+||+|||||++||+||.+|++.|++|+|+|. .+||++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~ 248 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQV 248 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCee
Confidence 3469999999999999999999999999999985 478865
No 159
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.71 E-value=2.3e-07 Score=94.11 Aligned_cols=40 Identities=30% Similarity=0.517 Sum_probs=37.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
..+||+|||||++||+||..+++.|.+|+|+||....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 4689999999999999999999999999999999887763
No 160
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.71 E-value=2.1e-07 Score=90.88 Aligned_cols=36 Identities=39% Similarity=0.544 Sum_probs=34.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
||+|||||++|+++|+.|++.|++|+|+|+++..||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999987765
No 161
>PLN02815 L-aspartate oxidase
Probab=98.70 E-value=1.3e-07 Score=96.20 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=37.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
...+||+|||||++||+||..+++.| +|+|+||....||..
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 34689999999999999999999999 999999999888743
No 162
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.70 E-value=1.8e-07 Score=94.36 Aligned_cols=40 Identities=33% Similarity=0.466 Sum_probs=35.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
...+||+|||||++||+||.+|++.|++|+|+|. ++||++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~ 249 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV 249 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence 3469999999999999999999999999999974 577754
No 163
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.70 E-value=2.6e-08 Score=102.76 Aligned_cols=39 Identities=33% Similarity=0.423 Sum_probs=35.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
.+||+|||||++||+||..++++|.+|+|+|+....+|.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH 43 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 589999999999999999999999999999998876653
No 164
>PRK07538 hypothetical protein; Provisional
Probab=98.70 E-value=1.3e-07 Score=93.18 Aligned_cols=35 Identities=34% Similarity=0.638 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
.||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 38999999999999999999999999999998654
No 165
>PRK08275 putative oxidoreductase; Provisional
Probab=98.69 E-value=9.9e-08 Score=97.13 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG 85 (445)
..+||+|||||.+||+||..++++ |.+|+|+||....+|
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~ 48 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRS 48 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence 358999999999999999999987 789999999887443
No 166
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=6.3e-08 Score=98.62 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=36.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||.+||+||..+++.|.+|+|+||....||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 35899999999999999999999999999999988766633
No 167
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.69 E-value=1e-07 Score=96.59 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
..+||+|||||++||+||..++ +|.+|+|+||.+..||.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 4689999999999999999986 59999999999887774
No 168
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.69 E-value=1.7e-07 Score=96.16 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG 85 (445)
.+||+|||||.+||+||..+++. |.+|+|+||....++
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 58999999999999999999998 999999999876443
No 169
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=1.7e-07 Score=95.99 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+||+|||||++||+||+.+++. .+|+|+||....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 458999999999999999999987 99999999876555
No 170
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.68 E-value=1.1e-07 Score=104.25 Aligned_cols=41 Identities=44% Similarity=0.636 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||+|.+||+||..+++.|.+|+|+||.+..||.+
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 46899999999999999999999999999999999999854
No 171
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.67 E-value=9.8e-08 Score=96.03 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=35.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
.+||+|||+|.+||+||..+++ |.+|+|+||.+..||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 5799999999999999999976 89999999998877743
No 172
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.67 E-value=7.5e-08 Score=95.37 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=38.8
Q ss_pred CCcEEeCceeeEEEec------CCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC
Q 042352 260 FESILLNTRVLSIDFD------EQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~------~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~ 311 (445)
+++++++++|++|+.+ ++..+.|++.+|++++|+ .||-|-+.... .+.+.-
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~-llVgADG~~S~vR~~~gi 191 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTK-LLIGADGSNSNVRKAANI 191 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEee-EEEEecCCCChhHHHcCC
Confidence 4799999999999753 223478888999999998 68888888754 555543
No 173
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.66 E-value=6.3e-08 Score=92.02 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=47.2
Q ss_pred cccHHHHHHhcCC---CCcEEeCceeeEEEecCCCcCeEEeCC---C--ceEEeccEEEEcCChhHHhh
Q 042352 247 ICQIPNQIASKLP---FESILLNTRVLSIDFDEQNMPNVRLAN---G--ETLKSEIGVILAVEEPEADK 307 (445)
Q Consensus 247 ~~~l~~~l~~~l~---g~~i~~n~~V~~I~~~~~~~~~V~~~~---g--~~i~a~~~VV~a~~~~~~~~ 307 (445)
++.+.+.|.+.+. |+++++|++|+.|++.+++.+.|.+.| | .+++|+ .|++.++...+.-
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~-FVfvGAGG~aL~L 247 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAK-FVFVGAGGGALPL 247 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECC-EEEECCchHhHHH
Confidence 3566777776663 899999999999999988878887642 2 469998 7999999987643
No 174
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.64 E-value=3.1e-07 Score=86.11 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~G 84 (445)
||+||||||.+|+.+|..|+++| .+|+|||+.....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 6999999975543
No 175
>PRK06996 hypothetical protein; Provisional
Probab=98.62 E-value=4.1e-07 Score=89.04 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=44.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC----CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQG----RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL 120 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G----~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl 120 (445)
.+.+||+|||||++|+++|+.|++.| .+|+|+|+.+...- ... .. -...++...++++.+|+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~------~~~------~r-~~~l~~~~~~~L~~lg~ 74 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS------AND------PR-AIALSHGSRVLLETLGA 74 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC------CCC------ce-EEEecHHHHHHHHhCCC
Confidence 45689999999999999999999987 47999999764320 000 00 01235667778888775
No 176
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.62 E-value=5e-08 Score=96.41 Aligned_cols=43 Identities=42% Similarity=0.594 Sum_probs=40.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
..++|+|||||++||+||.+|.++|++|+|+|+++.+||....
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 4579999999999999999999999999999999999998754
No 177
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.61 E-value=1.3e-07 Score=95.18 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=40.4
Q ss_pred cHHHHHHhcC---CCCcEEeCceeeEEEecCCCcCeEEeCC-Cc--eEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKL---PFESILLNTRVLSIDFDEQNMPNVRLAN-GE--TLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l---~g~~i~~n~~V~~I~~~~~~~~~V~~~~-g~--~i~a~~~VV~a~~~~~ 304 (445)
.+.+.|.+.+ .|++|+.++.|++|..+++++++|.+.+ ++ .+.|+ .||+|++-..
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~ 197 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPAR-AVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECC-EEEEcCCCCc
Confidence 4666665544 2799999999999987766667776643 32 47888 7999999864
No 178
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.61 E-value=6.2e-06 Score=80.27 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=46.4
Q ss_pred ccHHHHHHhcCC-CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 248 CQIPNQIASKLP-FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 248 ~~l~~~l~~~l~-g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
..+.++|.+.+. |++|+.+++|++|+.++++ +.|++.+|+.+.|+ .||+|++.|.
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~-~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLERDGEG-WQLLDANGEVIAAS-VVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcC-EEEEcCCccc
Confidence 467777777766 8999999999999987655 77888888778998 6999999986
No 179
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.60 E-value=1.1e-06 Score=87.90 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=35.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
+||+|||||++|+++|+.|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999999986
No 180
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.59 E-value=4.1e-07 Score=92.71 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=35.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~ 87 (445)
.+||+|||||++||+||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 47999999999999999999987 58999999998887744
No 181
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.58 E-value=3.2e-07 Score=82.30 Aligned_cols=39 Identities=41% Similarity=0.721 Sum_probs=36.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
-|+|||+|++||+|+..+...|-.|+++|++..+||...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 599999999999999999999888999999999999654
No 182
>PTZ00058 glutathione reductase; Provisional
Probab=98.57 E-value=5.7e-08 Score=98.08 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=38.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
..|||+|||||++|++||..+++.|.+|+|+|++ .+||.|-.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 5699999999999999999999999999999995 79997744
No 183
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.57 E-value=4.4e-07 Score=92.94 Aligned_cols=35 Identities=43% Similarity=0.514 Sum_probs=32.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
|+|||||++||+||..+++.|.+|+|+||...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 68999999999999999999999999999886653
No 184
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.54 E-value=8.5e-08 Score=95.65 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
++|||+|||||++|++||..+++.|++|+|+|+++.+||.|-
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 459999999999999999999999999999998889999873
No 185
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.54 E-value=8.4e-08 Score=95.84 Aligned_cols=44 Identities=30% Similarity=0.422 Sum_probs=40.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
+..+||+|||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 35699999999999999999999999999999999899998753
No 186
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.53 E-value=1.5e-07 Score=92.63 Aligned_cols=54 Identities=43% Similarity=0.664 Sum_probs=45.4
Q ss_pred cCCCCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCCCCcceeeeccCCeee
Q 042352 44 KLERKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASDAVGGRVRTDSVDGFLL 97 (445)
Q Consensus 44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~~~GG~~~s~~~~g~~~ 97 (445)
..++.+||+|||||++||++|+.|.++|.. ++||||++.+||.-+....++...
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~ 58 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRL 58 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEE
Confidence 345679999999999999999999999998 999999999999766544444433
No 187
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.52 E-value=3.2e-06 Score=75.87 Aligned_cols=79 Identities=18% Similarity=0.295 Sum_probs=52.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceeee----ccCCeeecccc---cchhccChhHHHhhc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRTD----SVDGFLLDRGF---QIFITAYPEAQKLLD 116 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s~----~~~g~~~d~G~---~~~~~~~~~~~~l~~ 116 (445)
..++|++|||||+-||+.|..|.-+ +.+|.|+|+....+=..++- -+.|..+-.|. ...........++++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 4579999999999999999999877 89999999998876433322 22233332221 122223345566777
Q ss_pred ccCCccee
Q 042352 117 YNALNLQK 124 (445)
Q Consensus 117 ~lgl~~~~ 124 (445)
+.++..+.
T Consensus 126 e~~IpyKk 133 (453)
T KOG2665|consen 126 EKKIPYKK 133 (453)
T ss_pred hcCCChhh
Confidence 66665543
No 188
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.51 E-value=1.1e-06 Score=79.34 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=49.6
Q ss_pred HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCc--eEEeccEEEEcCChhHHhhhcCC
Q 042352 250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGE--TLKSEIGVILAVEEPEADKLLRQ 311 (445)
Q Consensus 250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~--~i~a~~~VV~a~~~~~~~~ll~~ 311 (445)
+-++|.+.++ |+.+..+-+|.+.+..++++..|.+.+.. .++|+ .+|+|++....+.|..+
T Consensus 260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~-~~VLAsGsffskGLvae 324 (421)
T COG3075 260 LHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRAD-FYVLASGSFFSKGLVAE 324 (421)
T ss_pred HHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChh-Heeeeccccccccchhh
Confidence 4455555443 99999999999999999888888888764 37898 69999999888888877
No 189
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.51 E-value=1.1e-06 Score=87.94 Aligned_cols=38 Identities=37% Similarity=0.371 Sum_probs=33.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
+||+|||||++|+.||..+++.|.+|+|+|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 69999999999999999999999999999997544443
No 190
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.48 E-value=1.6e-07 Score=93.19 Aligned_cols=42 Identities=40% Similarity=0.532 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA-VGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~-~GG~~~ 88 (445)
+.+||+|||||++|++||..|++.|++|+|+|+++. +||.|-
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 469999999999999999999999999999999864 699764
No 191
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.47 E-value=1.7e-07 Score=100.07 Aligned_cols=43 Identities=35% Similarity=0.550 Sum_probs=40.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.+..+|+|||||+|||+||++|+++|++|+|||+.+.+||..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 3468999999999999999999999999999999999999875
No 192
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.47 E-value=1.9e-07 Score=93.32 Aligned_cols=43 Identities=40% Similarity=0.502 Sum_probs=39.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+.+|||+|||||++|++||..|++.|++|+|+|+.+.+||.|-
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 4579999999999999999999999999999999888999774
No 193
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.47 E-value=2.2e-07 Score=98.56 Aligned_cols=43 Identities=40% Similarity=0.627 Sum_probs=40.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
..+||+|||||++||+||++|+++|++|+|+|+.+.+||.++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4589999999999999999999999999999999999998854
No 194
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.47 E-value=6.7e-07 Score=91.39 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~ 87 (445)
.+||+|||||++||+||..+++. |.+|+|+||....||.+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 47999999999999999999987 47999999998877733
No 195
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.47 E-value=2.5e-06 Score=77.11 Aligned_cols=43 Identities=40% Similarity=0.669 Sum_probs=37.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC--CCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS--DAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~--~~~GG~~~ 88 (445)
+...||||||||++||.||.+|+.+|++|+|+|+. ..+||++.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 34689999999999999999999999999999876 44777764
No 196
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.46 E-value=1.8e-07 Score=92.78 Aligned_cols=43 Identities=33% Similarity=0.475 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD-AVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~-~~GG~~~s 89 (445)
+.|||+|||||++|++||..|+++|++|+|+|+.+ .+||.|..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 46999999999999999999999999999999976 47998754
No 197
>PRK06370 mercuric reductase; Validated
Probab=98.46 E-value=1.9e-07 Score=93.19 Aligned_cols=44 Identities=34% Similarity=0.466 Sum_probs=39.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
|+.++||+|||||++|++||..|++.|++|+|+|+. .+||.|..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 556799999999999999999999999999999985 67777653
No 198
>PRK02106 choline dehydrogenase; Validated
Probab=98.45 E-value=3.3e-06 Score=86.39 Aligned_cols=36 Identities=39% Similarity=0.491 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHS-QGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE~~~~ 82 (445)
..+|+||||||.+|+.+|..|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 45899999999999999999999 7999999999753
No 199
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.43 E-value=2.6e-07 Score=92.49 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=39.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
...|||+|||||++|++||..|++.|++|+|+|+. .+||.|-.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 45799999999999999999999999999999995 88998854
No 200
>PRK12831 putative oxidoreductase; Provisional
Probab=98.42 E-value=3.7e-07 Score=90.75 Aligned_cols=43 Identities=35% Similarity=0.527 Sum_probs=40.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.+.+||+|||||++||+||++|++.|++|+|+|+++.+||.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 4568999999999999999999999999999999999999875
No 201
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.42 E-value=3.4e-07 Score=93.22 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=38.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.+.+||+|||||++||+||..|+++|++|+|+|++ ..||.+..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 45699999999999999999999999999999995 78888764
No 202
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.41 E-value=2.8e-07 Score=91.51 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=38.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
+|||+|||||++|++||..+++.|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 58999999999999999999999999999999 589998763
No 203
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.41 E-value=4.1e-07 Score=89.89 Aligned_cols=43 Identities=30% Similarity=0.393 Sum_probs=39.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHS--QGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~--~G~~V~vlE~~~~~GG~~~s 89 (445)
...+|+|||||++||+||..|++ .|++|+|||+.+.+||..+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 45789999999999999999997 69999999999999998874
No 204
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.40 E-value=3.3e-07 Score=91.61 Aligned_cols=41 Identities=34% Similarity=0.498 Sum_probs=38.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.|||+|||||++|++||..|++.|++|+|+|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 38999999999999999999999999999999 889998764
No 205
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.40 E-value=3.6e-07 Score=91.33 Aligned_cols=43 Identities=30% Similarity=0.371 Sum_probs=38.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
+.++||+|||||++|++||..|++.|++|+|+|+ ..+||.|..
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~ 44 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLN 44 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceec
Confidence 3469999999999999999999999999999998 478888754
No 206
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.40 E-value=3.3e-07 Score=91.01 Aligned_cols=40 Identities=35% Similarity=0.563 Sum_probs=37.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.|||+|||||++|++||..|++.|++|+|+|+ +.+||.|-
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence 58999999999999999999999999999999 46899774
No 207
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=3.4e-07 Score=91.44 Aligned_cols=41 Identities=44% Similarity=0.613 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..|||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 569999999999999999999999999999999 78899775
No 208
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.39 E-value=5.1e-05 Score=72.46 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=44.0
Q ss_pred ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352 248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~ 305 (445)
..+...|.+.+. |++++.+++|++|+.+++++++|.+.+| +++|+ .||+|++++.-
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~-~vV~a~G~~~~ 194 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQAD-QVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECC-EEEEcCChhhh
Confidence 344555554443 9999999999999987766667888777 78998 79999999864
No 209
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.37 E-value=1.2e-06 Score=80.73 Aligned_cols=40 Identities=33% Similarity=0.534 Sum_probs=35.1
Q ss_pred ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.........||||||||++|.+-|+.|+|.|.+|+|+||.
T Consensus 38 ~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 38 VEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred hhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3334445789999999999999999999999999999996
No 210
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.37 E-value=3e-07 Score=88.44 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 69999999999999999999999999999998664
No 211
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.36 E-value=4.5e-07 Score=90.65 Aligned_cols=42 Identities=36% Similarity=0.487 Sum_probs=38.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
..|||+|||||++|++||..|++.|++|+|+|+.. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 45899999999999999999999999999999977 9998754
No 212
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.36 E-value=2.1e-06 Score=81.17 Aligned_cols=56 Identities=25% Similarity=0.371 Sum_probs=46.8
Q ss_pred ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
..+++.+.+.++ |++|+++++|..|+..++.+..|.+++|+++.++ +||+|.+-..
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~-~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEAD-YVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecC-EEEEccCcch
Confidence 345566666554 9999999999999999887788999999999998 7999998753
No 213
>PLN02985 squalene monooxygenase
Probab=98.36 E-value=6.8e-07 Score=89.78 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=36.4
Q ss_pred ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+......+||+|||||++|+++|+.|+++|++|+|+||...
T Consensus 36 ~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 36 AEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 334455678999999999999999999999999999999753
No 214
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.36 E-value=5.6e-07 Score=95.07 Aligned_cols=44 Identities=43% Similarity=0.669 Sum_probs=40.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
....+|+|||||++||+||++|+++|++|+|+|+.+.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45689999999999999999999999999999999999998764
No 215
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.35 E-value=6.2e-06 Score=78.55 Aligned_cols=115 Identities=18% Similarity=0.118 Sum_probs=83.8
Q ss_pred CCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeC
Q 042352 187 EVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLN 266 (445)
Q Consensus 187 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n 266 (445)
..+..+||++.|+++.+++.++.+.++..|+.+. ++.+ +.+.+.-.-..++.+.++||..+|++.|.+.- ++++ +|
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a-~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S-~A~v-l~ 144 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHA-FAGLVSLAGATGGLWSVEGGNWQIFEGLLEAS-GANV-LN 144 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhh-hhhheeeeeccCCceEecCCHHHHHHHHHHHc-cCcE-ec
Confidence 4688999999999999999999999999999863 3322 22221111134678899999999999999986 8999 99
Q ss_pred ceeeEE-EecCCCc--CeEEeCC--CceEEeccEEEEcCChhHH
Q 042352 267 TRVLSI-DFDEQNM--PNVRLAN--GETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 267 ~~V~~I-~~~~~~~--~~V~~~~--g~~i~a~~~VV~a~~~~~~ 305 (445)
++|++| ...+++. +.|...+ +......|.||+|+|....
T Consensus 145 ~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 145 TTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred ceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 999999 4444432 3555543 2233444589999999643
No 216
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=1.4e-05 Score=74.21 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=45.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD 93 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~ 93 (445)
.+..+||||||.|+.-...|...++.|.+|+-+|.+++.||...++..+
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 4567999999999999999999999999999999999999999988654
No 217
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.35 E-value=3.9e-07 Score=86.24 Aligned_cols=45 Identities=38% Similarity=0.590 Sum_probs=41.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD 90 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 90 (445)
+...+++|||||++|++||..|++.|++|.++|+++.+||+....
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 346789999999999999999999999999999999999997653
No 218
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.34 E-value=2.5e-06 Score=86.69 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=38.0
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCC-c--e-EEeccEEEEcCChhHHhhhc
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANG-E--T-LKSEIGVILAVEEPEADKLL 309 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g-~--~-i~a~~~VV~a~~~~~~~~ll 309 (445)
+.+|+.++.|++|..+++++++|++.++ + + +.++ .||+|++...+.+||
T Consensus 208 nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak-~VIlaAGai~SP~LL 260 (532)
T TIGR01810 208 NLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANK-EVILSAGAINSPQLL 260 (532)
T ss_pred CeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEee-eEEEccCCCCCHHHH
Confidence 7999999999999998777788887543 2 2 4566 799999986655544
No 219
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.1e-06 Score=81.62 Aligned_cols=44 Identities=34% Similarity=0.481 Sum_probs=36.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD 90 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 90 (445)
+.+||+|||||++||+||.+++++|.+++|++....+||.....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~ 45 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT 45 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc
Confidence 56899999999999999999999999955555557777776654
No 220
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.31 E-value=7.3e-07 Score=87.10 Aligned_cols=37 Identities=41% Similarity=0.443 Sum_probs=33.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
+||+|||||++|++||+.|+++|++|+|+|++...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~ 37 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK 37 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 5899999999999999999999999999999865543
No 221
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.30 E-value=1.1e-06 Score=86.88 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=31.7
Q ss_pred CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++++.++ |+++..++++ +..|++++|++++|+ .||=|++...
T Consensus 168 Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad-~~IDASG~~s 211 (454)
T PF04820_consen 168 GVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEAD-FFIDASGRRS 211 (454)
T ss_dssp T-EEEET--EEEEEE-TTSEEEEEEETTSEEEEES-EEEE-SGGG-
T ss_pred CCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEe-EEEECCCccc
Confidence 99998875 8888777655 568999999999998 6998888764
No 222
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.29 E-value=1e-06 Score=88.92 Aligned_cols=40 Identities=35% Similarity=0.574 Sum_probs=37.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+||||| +||+||+.++++|.+|+||||....||.+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 47899999999 99999999999999999999999888854
No 223
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.29 E-value=7.4e-07 Score=86.96 Aligned_cols=32 Identities=41% Similarity=0.515 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
|||+|||||++|++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 224
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.28 E-value=1.2e-06 Score=91.24 Aligned_cols=43 Identities=35% Similarity=0.543 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
...+|+|||||++||+||+.|++.|++|+|+|+.+.+||....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 5679999999999999999999999999999999999998753
No 225
>PRK14694 putative mercuric reductase; Provisional
Probab=98.27 E-value=1.1e-06 Score=87.99 Aligned_cols=42 Identities=29% Similarity=0.486 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
..+||+|||||++|++||..|++.|++|+|+|+. .+||.|..
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 5799999999999999999999999999999985 78997753
No 226
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.27 E-value=1.1e-06 Score=94.94 Aligned_cols=42 Identities=38% Similarity=0.548 Sum_probs=39.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...||+|||||++||+||++|+++|++|+|+|+.+.+||..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 467999999999999999999999999999999999999775
No 227
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.27 E-value=9.5e-07 Score=88.29 Aligned_cols=39 Identities=28% Similarity=0.509 Sum_probs=36.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
|||+|||||++|++||..|++.|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999965 788764
No 228
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.27 E-value=1.4e-06 Score=86.54 Aligned_cols=43 Identities=42% Similarity=0.608 Sum_probs=39.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...+||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 3568999999999999999999999999999999999999764
No 229
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.26 E-value=1e-06 Score=88.17 Aligned_cols=43 Identities=37% Similarity=0.509 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec------CCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA------SDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~------~~~~GG~~~s 89 (445)
..||++|||||++|++||.+|++.|.+|+|+|+ ...+||.|..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 469999999999999999999999999999998 3677887753
No 230
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.26 E-value=2.2e-06 Score=88.41 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=47.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCC--CcceeeeccCCeeecccccchhccChhHHHhhcccCCc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHS-QGRPFVLLEASDAV--GGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN 121 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE~~~~~--GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 121 (445)
|++++||+|||||++||++|..|++ .|.+|+|||+.+.. .|++. +..+...++++.+|+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~-----------------gl~prtleiL~~lGl~ 91 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD-----------------GIACRTMEMFQAFGFA 91 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee-----------------EEChHHHHHHHhccch
Confidence 5568999999999999999999999 59999999987542 12221 2356788888888863
No 231
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.25 E-value=6e-06 Score=75.84 Aligned_cols=68 Identities=26% Similarity=0.395 Sum_probs=49.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCcceeeec--cCCeeecccccchhccChhHHHhhcc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAVGGRVRTDS--VDGFLLDRGFQIFITAYPEAQKLLDY 117 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~l~~~ 117 (445)
..+-|||+|++||++|.+|.+. |.++.|+|.-+..||..-... +.|+... |++.+-..+..+++|+..
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~R-GGRemEnhfEc~WDlfrs 96 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVR-GGREMENHFECLWDLFRS 96 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeec-CcHHHHHHHHHHHHHHhc
Confidence 5688999999999999999986 669999999999999876543 3466553 443333334455566544
No 232
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.25 E-value=1.7e-06 Score=84.43 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCCEEEEecCCCCCcceeee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLH-SQGRPFVLLEASDAVGGRVRTD 90 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~-~~G~~V~vlE~~~~~GG~~~s~ 90 (445)
...+|+|||||++||+||.+|. +.|++|+|+|+.+.+||..+.-
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 3468999999999999999765 5699999999999999999863
No 233
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.24 E-value=1.2e-06 Score=87.92 Aligned_cols=41 Identities=29% Similarity=0.533 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--------CCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD--------AVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~--------~~GG~~~ 88 (445)
.|||+|||||++|++||..|++.|++|+|+|+.. .+||.|-
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~ 53 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV 53 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence 5899999999999999999999999999999732 4899874
No 234
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.24 E-value=9.9e-07 Score=88.57 Aligned_cols=41 Identities=49% Similarity=0.654 Sum_probs=35.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.+|+|||||++||+||..|.+.|++|+++||++.+||.-+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 57999999999999999999999999999999999998753
No 235
>PRK14727 putative mercuric reductase; Provisional
Probab=98.22 E-value=1.5e-06 Score=86.98 Aligned_cols=43 Identities=30% Similarity=0.503 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.++|++|||||++|+++|..|++.|.+|+|+|+.+.+||.|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 4689999999999999999999999999999998899998854
No 236
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.21 E-value=1.7e-06 Score=91.43 Aligned_cols=43 Identities=35% Similarity=0.577 Sum_probs=39.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...+||+|||||++||+||++|+++|++|+|+|+.+.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3568999999999999999999999999999999999999875
No 237
>PLN02546 glutathione reductase
Probab=98.21 E-value=3.5e-06 Score=85.28 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=37.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec---------CCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA---------SDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~---------~~~~GG~~~s 89 (445)
.+|||+|||||.+|+.||..+++.|++|+|+|+ ...+||-|-.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 369999999999999999999999999999996 2567886654
No 238
>PRK13748 putative mercuric reductase; Provisional
Probab=98.21 E-value=1.4e-06 Score=89.25 Aligned_cols=41 Identities=39% Similarity=0.527 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||++|++||..|++.|++|+|+|++ .+||.|-
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 3699999999999999999999999999999997 8999874
No 239
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.20 E-value=1.8e-06 Score=80.21 Aligned_cols=43 Identities=35% Similarity=0.557 Sum_probs=38.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ------GRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~------G~~V~vlE~~~~~GG~~~s 89 (445)
..+||+|||||++||+||..|.+. ..+|+|+|+...+||++-|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 469999999999999999999773 4699999999999998865
No 240
>PRK10262 thioredoxin reductase; Provisional
Probab=98.20 E-value=2.1e-06 Score=81.51 Aligned_cols=43 Identities=26% Similarity=0.463 Sum_probs=37.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.+.+||+|||||++||+||..|+++|++|+++|+. ..||.+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 35689999999999999999999999999999964 67887654
No 241
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.19 E-value=2.5e-06 Score=85.20 Aligned_cols=42 Identities=40% Similarity=0.689 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999764
No 242
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.18 E-value=5.1e-07 Score=76.17 Aligned_cols=67 Identities=28% Similarity=0.385 Sum_probs=51.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceeeeccCCeeecccccchhcc--ChhHHHhhcccCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITA--YPEAQKLLDYNALNLQ 123 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~~ 123 (445)
..||+|||||-+||+|||+.+++ ..+|.|+|++-.+||-++ +|++.|... .....-+++++|+.++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~EigvpYe 145 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGVPYE 145 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCCCcc
Confidence 57999999999999999999976 679999999999998665 566665431 2233345788887665
Q ss_pred e
Q 042352 124 K 124 (445)
Q Consensus 124 ~ 124 (445)
.
T Consensus 146 d 146 (328)
T KOG2960|consen 146 D 146 (328)
T ss_pred c
Confidence 3
No 243
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.17 E-value=2.4e-06 Score=83.58 Aligned_cols=45 Identities=36% Similarity=0.492 Sum_probs=41.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD 90 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 90 (445)
+.+||++|||||++|.+||..+++.|.+|+++|+...+||-|--+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 467999999999999999999999999999999988999988653
No 244
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.17 E-value=2.2e-06 Score=87.80 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=36.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
.+.||+|||||++||+||..+++.|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4569999999999999999999999999999999887663
No 245
>PTZ00367 squalene epoxidase; Provisional
Probab=98.17 E-value=2e-06 Score=86.96 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+.++||+|||||++|+++|+.|+++|++|+|+||+.
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 356899999999999999999999999999999975
No 246
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.15 E-value=3e-06 Score=87.87 Aligned_cols=42 Identities=38% Similarity=0.642 Sum_probs=39.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..++|+|||||++||+||+.|++.|++|+|+|+++.+||...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999875
No 247
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.15 E-value=3.3e-06 Score=87.46 Aligned_cols=42 Identities=36% Similarity=0.581 Sum_probs=39.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 468999999999999999999999999999999999999865
No 248
>PLN02507 glutathione reductase
Probab=98.15 E-value=2.6e-06 Score=85.58 Aligned_cols=44 Identities=30% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec---------CCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA---------SDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~---------~~~~GG~~~s 89 (445)
+-+||++|||||++|+.||..+++.|.+|+|+|+ .+.+||.|-.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 3469999999999999999999999999999996 3678998854
No 249
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.14 E-value=3.7e-06 Score=83.81 Aligned_cols=42 Identities=40% Similarity=0.592 Sum_probs=39.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...+|+|||||++||+||+.|++.|++|+|+|+.+.+||..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 467999999999999999999999999999999999999875
No 250
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.13 E-value=3.6e-06 Score=83.92 Aligned_cols=43 Identities=47% Similarity=0.701 Sum_probs=39.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...++|+|||||++||++|+.|+++|++|+|+|+++.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 3457999999999999999999999999999999999998764
No 251
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.13 E-value=2.8e-06 Score=88.86 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=36.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
.+..+|+|||||++||+||++|+++|++|+|+|+.+..|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 45689999999999999999999999999999998766554
No 252
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.12 E-value=3.1e-06 Score=91.72 Aligned_cols=43 Identities=35% Similarity=0.535 Sum_probs=40.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
..+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998864
No 253
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.11 E-value=3.7e-06 Score=82.36 Aligned_cols=45 Identities=38% Similarity=0.471 Sum_probs=41.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.....+|+|||||++||+||+.|++.|++|+|+|+.+.+||++..
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 334589999999999999999999999999999999999998864
No 254
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.10 E-value=4e-06 Score=80.54 Aligned_cols=36 Identities=44% Similarity=0.514 Sum_probs=33.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.||+|||||++|+.||+.|+++|++|+|+|+.+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 589999999999999999999999999999876654
No 255
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.10 E-value=1.9e-05 Score=75.54 Aligned_cols=36 Identities=33% Similarity=0.603 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~ 82 (445)
.+.+|+|||||.+||.+|..|.++- .+|+++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 3568999999999999999999974 89999999876
No 256
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.10 E-value=3.4e-06 Score=81.39 Aligned_cols=37 Identities=35% Similarity=0.574 Sum_probs=34.2
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcc
Q 042352 50 RVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGR 86 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~ 86 (445)
||+|||||++||++|+.|++. |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999877763
No 257
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.09 E-value=3.8e-06 Score=86.73 Aligned_cols=44 Identities=43% Similarity=0.636 Sum_probs=40.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
...++|+|||+|++||+||-.|.|.|+.|+|+||.+++||....
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 34689999999999999999999999999999999999998763
No 258
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.08 E-value=4.2e-06 Score=78.38 Aligned_cols=36 Identities=36% Similarity=0.702 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
+.+|+|||||++||++|..|.++|.+|+|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 458999999999999999999999999999987554
No 259
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.07 E-value=4.3e-06 Score=83.52 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=38.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecC--------CCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEAS--------DAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~--------~~~GG~~~s 89 (445)
.+|||+|||||++|..||..+++. |.+|+|+|+. +.+||-|-.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 469999999999999999999997 9999999984 578997754
No 260
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.05 E-value=9.6e-06 Score=83.34 Aligned_cols=42 Identities=29% Similarity=0.509 Sum_probs=38.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcceee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGGRVRT 89 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~-~~~GG~~~s 89 (445)
+|||+|||||.+|..||..+++.|.+|+|+|+. +.+||-|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 689999999999999999999999999999974 478997754
No 261
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.04 E-value=2.6e-05 Score=74.82 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=39.7
Q ss_pred cHHHHHHhcC---CCCcEEeCceeeEEEecCCCcC-eEEeCCC----ceEEeccEEEEcCChh
Q 042352 249 QIPNQIASKL---PFESILLNTRVLSIDFDEQNMP-NVRLANG----ETLKSEIGVILAVEEP 303 (445)
Q Consensus 249 ~l~~~l~~~l---~g~~i~~n~~V~~I~~~~~~~~-~V~~~~g----~~i~a~~~VV~a~~~~ 303 (445)
.|.++|.+.+ ++++|+-++.+.+|..+++..+ +|.+.+. .++.|+ .||+|++--
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~ 195 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAK-AVVLATGGL 195 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecC-eEEEecCCC
Confidence 3455666555 2899999999999998887444 7877543 357888 799999873
No 262
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.01 E-value=8.3e-06 Score=81.66 Aligned_cols=42 Identities=38% Similarity=0.628 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...+|+|||||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 347999999999999999999999999999999999999775
No 263
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.00 E-value=9.7e-06 Score=82.97 Aligned_cols=43 Identities=42% Similarity=0.669 Sum_probs=39.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
....+|+|||||++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4567999999999999999999999999999999999999764
No 264
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=6.3e-05 Score=72.28 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ---GRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~---G~~V~vlE~~~~~GG 85 (445)
+++|+|||+|++|++.|.+|.+. ...|.|+|+....|+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 36899999999999999999996 223999999999885
No 265
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.99 E-value=7.4e-06 Score=79.21 Aligned_cols=36 Identities=42% Similarity=0.487 Sum_probs=33.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
||+|||||++|+.||+.|+++|++|+|+|+++..|-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999998777554
No 266
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=1.1e-05 Score=78.21 Aligned_cols=35 Identities=37% Similarity=0.477 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+..|||||||||.+|+-||+..++.|.+++++--+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 34599999999999999999999999999998754
No 267
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.95 E-value=7.3e-05 Score=79.44 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=36.5
Q ss_pred CCcEEeCceeeEEEecC-CCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDE-QNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~-~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++|++++.|++|..++ +....|.+.+|+++.+| .||++++...
T Consensus 201 GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D-~Vv~A~G~rP 245 (847)
T PRK14989 201 GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVD-FIVFSTGIRP 245 (847)
T ss_pred CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcC-EEEECCCccc
Confidence 99999999999998654 23456888899999998 7999998753
No 268
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.94 E-value=9.8e-06 Score=71.19 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
||+|||||++||+||..|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987543
No 269
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.94 E-value=1.6e-05 Score=76.38 Aligned_cols=42 Identities=36% Similarity=0.447 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...+|+|||||++||++|..|++.|++|+++|+.+.+||...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 346899999999999999999999999999999999999764
No 270
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.91 E-value=2e-05 Score=57.85 Aligned_cols=35 Identities=40% Similarity=0.644 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
+|+|||||..|+-.|..|++.|.+|+++|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999987765
No 271
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.91 E-value=1.2e-05 Score=80.41 Aligned_cols=42 Identities=36% Similarity=0.536 Sum_probs=36.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--------CCCcceee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD--------AVGGRVRT 89 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~--------~~GG~~~s 89 (445)
.||++|||||++|+.||..+++.|.+|+++|+.. .+||.|-.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 4899999999999999999999999999999731 57887643
No 272
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.90 E-value=4.8e-05 Score=73.38 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||.+|..||.-.+-+|.+|.++|+++...|-.+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 459999999999999999999999999999999999777443
No 273
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.90 E-value=0.00017 Score=71.76 Aligned_cols=40 Identities=35% Similarity=0.491 Sum_probs=35.1
Q ss_pred cCCCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCC
Q 042352 44 KLERKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAV 83 (445)
Q Consensus 44 ~~~~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~ 83 (445)
+....||.||||||-+|...|..|++. ..+|++||+....
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 355689999999999999999999998 6799999996554
No 274
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.88 E-value=1.7e-05 Score=72.00 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~~~ 83 (445)
.++||+|||||..|+|+|++|.++ |.+|+|+|+++..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 479999999999999999999885 7999999998764
No 275
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.87 E-value=1.7e-05 Score=79.97 Aligned_cols=42 Identities=33% Similarity=0.394 Sum_probs=38.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..++||+|||||.+||.||..++++|.+|+|+||....+|.+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence 457899999999999999999999999999999998888644
No 276
>PRK13984 putative oxidoreductase; Provisional
Probab=97.86 E-value=2.3e-05 Score=80.99 Aligned_cols=43 Identities=33% Similarity=0.549 Sum_probs=39.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.+..+|+|||||++|++||..|++.|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4568899999999999999999999999999999999999765
No 277
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.84 E-value=2.1e-05 Score=79.88 Aligned_cols=39 Identities=33% Similarity=0.522 Sum_probs=35.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
..+||+|||+|++||+||..+++. .+|+|+||....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 458999999999999999999987 899999999887774
No 278
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.82 E-value=2.1e-05 Score=78.50 Aligned_cols=38 Identities=32% Similarity=0.613 Sum_probs=34.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+|+|||||++|++||..|++.|.+|+|+|++ ..||.|-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 7999999999999999999999999999996 5777664
No 279
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.82 E-value=2.3e-05 Score=78.27 Aligned_cols=40 Identities=28% Similarity=0.499 Sum_probs=36.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.|++|||||.+|+.||..|++.|.+|+|+|++ .+||.|-.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 48999999999999999999999999999986 58997754
No 280
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.76 E-value=1.1e-05 Score=71.57 Aligned_cols=43 Identities=19% Similarity=0.503 Sum_probs=37.6
Q ss_pred cCCCCCcEEEECCCHHHHHHHHHHHHCC------CCEEEEecCCCCCcc
Q 042352 44 KLERKDRVIVIGAGLAGLAAATRLHSQG------RPFVLLEASDAVGGR 86 (445)
Q Consensus 44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G------~~V~vlE~~~~~GG~ 86 (445)
++.+..+|+|||||+.|.++||+|++++ ..|+|+|.....||.
T Consensus 6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 4445689999999999999999999987 699999998888763
No 281
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.74 E-value=0.00011 Score=69.80 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~ 83 (445)
.+|+|+||.|+++|+-|..|.+.+ .+++.||+++..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 479999999999999999999986 899999987653
No 282
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.73 E-value=4.7e-05 Score=70.35 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=38.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcceee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~~s 89 (445)
.+.|+|||+|++|+.+|+.|.++ +.+|+|+|+.+.++|..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 45899999999999999999995 7899999999999998876
No 283
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.73 E-value=3.3e-05 Score=81.72 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~ 82 (445)
+|+|||||++||++|..|++. |++|+|+|+++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 799999999999999999998 899999999876
No 284
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.72 E-value=0.00021 Score=75.85 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=35.8
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++|++++.|++|..++ ....|++.||+++.+| .||++++..
T Consensus 196 GV~v~~~~~v~~i~~~~-~~~~v~~~dG~~i~~D-~Vi~a~G~~ 237 (785)
T TIGR02374 196 GLTFLLEKDTVEIVGAT-KADRIRFKDGSSLEAD-LIVMAAGIR 237 (785)
T ss_pred CCEEEeCCceEEEEcCC-ceEEEEECCCCEEEcC-EEEECCCCC
Confidence 99999999999997653 4467888999999998 799999874
No 285
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.72 E-value=3.8e-05 Score=78.57 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHH----HCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLH----SQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~----~~G~~V~vlE~~~~ 82 (445)
||+|||||++||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 8999999999999999998 67999999999876
No 286
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.66 E-value=5.9e-05 Score=69.79 Aligned_cols=43 Identities=28% Similarity=0.408 Sum_probs=40.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.++|++|||+|++|-.||...++.|++.+.+|++..+||-|--
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 5799999999999999999999999999999999999997753
No 287
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.59 E-value=0.00068 Score=66.33 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 46799999999999999999999999999998654
No 288
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.57 E-value=7.3e-05 Score=75.75 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=34.0
Q ss_pred cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+..++|+||||+|.+|.+.|..|++.|++|+|||+.
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 3456799999999999999999999889999999986
No 289
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.56 E-value=0.0062 Score=61.82 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=36.4
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeC---CCc--eEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLA---NGE--TLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~---~g~--~i~a~~~VV~a~~~~~ 304 (445)
|++|+.+++|++|+.+++++++|++. +|+ +++|+ .||+|+++|.
T Consensus 142 Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~wa 190 (516)
T TIGR03377 142 GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIWA 190 (516)
T ss_pred CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcch
Confidence 99999999999999887766666653 343 68998 7999999986
No 290
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.55 E-value=7.8e-05 Score=80.33 Aligned_cols=36 Identities=36% Similarity=0.467 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+||+|||||.+||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 458999999999999999999999999999999875
No 291
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.54 E-value=9e-05 Score=73.71 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=35.4
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++++++++|++|+.++++ +.|++.+|+++.+| .|+++++...
T Consensus 223 gI~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~~D-~vl~a~G~~p 265 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQDGDG-VTLTLDDGSTVTAD-VLLVATGRVP 265 (452)
T ss_pred CCEEEeCCEEEEEEEcCCe-EEEEEcCCCEEEcC-EEEEeeccCc
Confidence 8899999999999876544 56777788889998 7999998654
No 292
>PRK07846 mycothione reductase; Reviewed
Probab=97.53 E-value=9e-05 Score=73.67 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=35.8
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~ 305 (445)
+++++++++|++|+.++++ +.|++.+|+++.+| .||+|++...-
T Consensus 220 ~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~~D-~vl~a~G~~pn 263 (451)
T PRK07846 220 RWDVRLGRNVVGVSQDGSG-VTLRLDDGSTVEAD-VLLVATGRVPN 263 (451)
T ss_pred CeEEEeCCEEEEEEEcCCE-EEEEECCCcEeecC-EEEEEECCccC
Confidence 8899999999999876543 56777788889998 79999887543
No 293
>PLN02785 Protein HOTHEAD
Probab=97.50 E-value=0.00014 Score=74.26 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=32.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...||+||||||.+|+..|..|++ +.+|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 446999999999999999999999 69999999965
No 294
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.50 E-value=0.0025 Score=62.73 Aligned_cols=42 Identities=31% Similarity=0.495 Sum_probs=36.4
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCc--eEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGE--TLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~--~i~a~~~VV~a~~~~ 303 (445)
|++++++++|++++..+++ +.|++++|+ +++++ .|++|++-.
T Consensus 228 gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad-~vLvAiGR~ 271 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEAD-AVLVAIGRK 271 (454)
T ss_pred CeEEEccceEEEEEecCCe-EEEEEecCCCCEEEee-EEEEccCCc
Confidence 8899999999999998876 888888886 68898 699999874
No 295
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.46 E-value=0.0015 Score=63.50 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=35.9
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++++++++|++|..+++. +.|++.+|+++.+| .||+|++...
T Consensus 197 gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D-~vI~a~G~~p 239 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVD-AVIAAAGLRP 239 (377)
T ss_pred CCEEEECCeEEEEEccCCE-EEEEEcCCcEEECC-EEEECcCCCc
Confidence 8899999999999876543 56788899899998 7999988753
No 296
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.42 E-value=0.0014 Score=65.33 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+++|||||.+|+-.|..|++.|.+|+++|+.++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 5899999999999999999999999999998644
No 297
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.39 E-value=0.0022 Score=64.12 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=35.3
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++++++++|++|+.++++ +.+++.+|+++.++ .||+|++...
T Consensus 230 gI~v~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D-~vi~a~G~~p 272 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDDG-VIVHLKSGKKIKAD-CLLYANGRTG 272 (461)
T ss_pred CCEEEECCEEEEEEEeCCe-EEEEECCCCEEEeC-EEEEeecCCc
Confidence 8899999999999876544 55677788889998 7999998754
No 298
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.38 E-value=0.0011 Score=63.46 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=46.3
Q ss_pred Cccc-cCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCC-ceEEeccEEEEcCChhHH
Q 042352 240 NTIP-ANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANG-ETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 240 ~~~~-~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g-~~i~a~~~VV~a~~~~~~ 305 (445)
..|| ..-.+.++++|.+.+. ||+|+++++|++| +++ ...|.+.++ .+++|+ .||+|++-...
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-~~~v~~~~~~~~~~a~-~vIlAtGG~s~ 142 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-TLRFETPDGQSTIEAD-AVVLALGGASW 142 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-cEEEEECCCceEEecC-EEEEcCCCccc
Confidence 4444 4557788999988775 9999999999999 222 367777543 468998 69999997543
No 299
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00028 Score=64.29 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=43.3
Q ss_pred ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcceeeeccCCeeeccc
Q 042352 41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGGRVRTDSVDGFLLDRG 100 (445)
Q Consensus 41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~-~~~GG~~~s~~~~g~~~d~G 100 (445)
.......+||.||||||-+||+||-+.+..|.+|.++|-- +.+-| .++-.+|..++.|
T Consensus 12 ~~~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~G--tsWGlGGTCvNVG 70 (503)
T KOG4716|consen 12 ARLFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQG--TSWGLGGTCVNVG 70 (503)
T ss_pred hhhcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCC--CccccCceeeecc
Confidence 3344456899999999999999999999999999999953 22322 4455556555555
No 300
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.36 E-value=0.0018 Score=64.78 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||||.+|+.+|..|++.|.+|+++|+.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 36899999999999999999999999999998653
No 301
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.35 E-value=0.00026 Score=69.23 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=35.0
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++++++++|++|+. + +.+.|++.+|+++.+| .||++++...
T Consensus 200 GV~i~~~~~V~~i~~-~-~~~~v~l~~g~~i~aD-~Vv~a~G~~p 241 (396)
T PRK09754 200 GVRILLNNAIEHVVD-G-EKVELTLQSGETLQAD-VVIYGIGISA 241 (396)
T ss_pred CCEEEeCCeeEEEEc-C-CEEEEEECCCCEEECC-EEEECCCCCh
Confidence 999999999999976 3 3356788899889998 7999998754
No 302
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.32 E-value=0.00028 Score=69.99 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G 84 (445)
.+|+|||||++|++||..|++. +++|+|+|+++..+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 3799999999999999999987 67999999987654
No 303
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.0024 Score=63.92 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+++|||||.+|+-+|..|++.|.+|+++|+.++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 5899999999999999999999999999998654
No 304
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.28 E-value=0.00029 Score=70.10 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVG 84 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~G 84 (445)
+|+|||||++||+||..|++.+ .+|+|+|+++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 6999999999999999999975 5899999998764
No 305
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.23 E-value=0.00047 Score=63.17 Aligned_cols=47 Identities=30% Similarity=0.362 Sum_probs=41.9
Q ss_pred cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeee
Q 042352 44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTD 90 (445)
Q Consensus 44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~ 90 (445)
.....+|..|||||-+|+.+|...++.|.+|.|+|..-.+||-|--.
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~ 62 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV 62 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence 34458999999999999999999999999999999988999988653
No 306
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.14 E-value=0.004 Score=62.29 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=34.9
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++++++++|++|+.++++ +.|.+.+|+++.+| .||++++...
T Consensus 232 gV~i~~~~~v~~v~~~~~~-~~v~~~~g~~l~~D-~vl~a~G~~p 274 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDG-VVVTLTDGRTVEGS-HALMAVGSVP 274 (466)
T ss_pred CcEEEcCCEEEEEEEeCCE-EEEEECCCcEEEec-EEEEeecCCc
Confidence 8899999999999876554 55777788889998 7999977643
No 307
>PLN02507 glutathione reductase
Probab=97.14 E-value=0.0042 Score=62.59 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=34.6
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++|+++++|++|+.++++ +.|.+.+|+++.+| .|+++++..
T Consensus 258 GI~i~~~~~V~~i~~~~~~-~~v~~~~g~~i~~D-~vl~a~G~~ 299 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGG-IKVITDHGEEFVAD-VVLFATGRA 299 (499)
T ss_pred CCEEEeCCEEEEEEEeCCe-EEEEECCCcEEEcC-EEEEeecCC
Confidence 8899999999999876544 56777788889998 799998764
No 308
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.12 E-value=0.00053 Score=67.68 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+.+.+|+|||||.+|+++|..|.+.+++|+|+|+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 3567999999999999999999877899999998765
No 309
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.12 E-value=0.0045 Score=62.07 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|+++++++.|++|..++++...|++.+|+++.++ .||++++..
T Consensus 245 GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D-~vl~a~G~~ 287 (486)
T TIGR01423 245 GINIMTNENPAKVTLNADGSKHVTFESGKTLDVD-VVMMAIGRV 287 (486)
T ss_pred CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcC-EEEEeeCCC
Confidence 8899999999999876555456777788889998 699988864
No 310
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.10 E-value=0.0049 Score=61.32 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=34.6
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++++++++|++|..++++ +.|++.+|+++.+| .||+|++..
T Consensus 221 gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D-~viva~G~~ 262 (446)
T TIGR01424 221 GIRIHPQTSLTSITKTDDG-LKVTLSHGEEIVAD-VVLFATGRS 262 (446)
T ss_pred CCEEEeCCEEEEEEEcCCe-EEEEEcCCcEeecC-EEEEeeCCC
Confidence 8899999999999876544 56777788889998 699998864
No 311
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.98 E-value=0.00089 Score=65.78 Aligned_cols=60 Identities=33% Similarity=0.527 Sum_probs=47.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNL 122 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 122 (445)
..+++|||+|..||.+|..|+++|++|+++|+.+++||+... ......+.+++++.|+++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~---------------~~~~~~~~~~l~~~gi~~ 195 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD---------------PEVAEELAELLEKYGVEL 195 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh---------------HHHHHHHHHHHHHCCcEE
Confidence 479999999999999999999999999999999999986531 122345666666666544
No 312
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0013 Score=59.84 Aligned_cols=36 Identities=42% Similarity=0.621 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..|.|||||++|.-|||.++++|..|.++|=.+.-+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 469999999999999999999999999999665543
No 313
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.68 E-value=0.0026 Score=61.82 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~ 82 (445)
.||+|||||++|+++|..|.+. ..+|+|+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 5899999999999999999886 458999998763
No 314
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.57 E-value=0.022 Score=53.91 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=33.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCC
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDA 82 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~ 82 (445)
|++.+|+|.||-|+.-|+-|..|...+ .+++.+||.+.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 456799999999999999999999974 78999999754
No 315
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0048 Score=53.19 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=37.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC----CCCCcceeee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS----DAVGGRVRTD 90 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~----~~~GG~~~s~ 90 (445)
..-+|+|||+|+++-+||.+++++..+.+++|.- -.+||+..+.
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 3458999999999999999999999999999942 3458888764
No 316
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.49 E-value=0.0027 Score=61.42 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++++++++|++|+.+ .|.+.+|+++.+| .||++++...
T Consensus 205 gV~v~~~~~v~~i~~~-----~v~~~~g~~i~~D-~vi~a~G~~p 243 (364)
T TIGR03169 205 GIEVHEGAPVTRGPDG-----ALILADGRTLPAD-AILWATGARA 243 (364)
T ss_pred CCEEEeCCeeEEEcCC-----eEEeCCCCEEecC-EEEEccCCCh
Confidence 9999999999998532 4777888889998 7999998653
No 317
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.48 E-value=0.0032 Score=52.83 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|+|||||-.|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999998864
No 318
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0017 Score=59.67 Aligned_cols=40 Identities=35% Similarity=0.450 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..|||.|||+|++|-+||.+.+++|.+.-++- .+.||+.-
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvl 249 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVL 249 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeec
Confidence 46999999999999999999999999876652 56788663
No 319
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.41 E-value=0.0051 Score=61.89 Aligned_cols=35 Identities=34% Similarity=0.529 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+++|..|+++|++|+++|+.+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 45799999999999999999999999999997653
No 320
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.37 E-value=0.0057 Score=57.67 Aligned_cols=36 Identities=39% Similarity=0.608 Sum_probs=31.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQ----GRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~----G~~V~vlE~~~ 81 (445)
...+||+|||||+.|++-|..|... ..+|+++|..+
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 3479999999999999999999875 56999999873
No 321
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.33 E-value=0.005 Score=52.87 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.|+|||||..|...|..++..|++|+++|.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999998533
No 322
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0032 Score=56.67 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-------CCEEEEec
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQG-------RPFVLLEA 79 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G-------~~V~vlE~ 79 (445)
...+|+|||||+.||++|..+.+.+ .+|+|++-
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 3568999999999999998888843 58899863
No 323
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.26 E-value=0.076 Score=50.62 Aligned_cols=42 Identities=36% Similarity=0.362 Sum_probs=29.4
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCC---C--ceEEeccEEEEcCCh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLAN---G--ETLKSEIGVILAVEE 302 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~---g--~~i~a~~~VV~a~~~ 302 (445)
..+|+.+++|++++..+++.+.+++.+ | .++.+| .||+||+.
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D-~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVD-AVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEES-EEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecC-EEEEcCCc
Confidence 468999999999999986557777765 2 358888 79999975
No 324
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.16 E-value=0.0057 Score=61.14 Aligned_cols=34 Identities=38% Similarity=0.502 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
+|.|||+|.+|+++|..|.++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 325
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.0082 Score=57.58 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=31.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...+||||||||.+|.-||...++-|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 35699999999999999999999999998888654
No 326
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.92 E-value=0.012 Score=58.45 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 193 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL 193 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence 3579999999999999999999999999999987764
No 327
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.88 E-value=0.013 Score=54.74 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=32.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
++..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 344679999999999999999999999999999763
No 328
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.87 E-value=0.013 Score=55.00 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...|+|||+|..|..-|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999764
No 329
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.84 E-value=0.0088 Score=51.51 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=27.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+|.|||.|..||..|..|+++|++|+-+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 699999999999999999999999999997643
No 330
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.80 E-value=0.012 Score=59.06 Aligned_cols=35 Identities=29% Similarity=0.558 Sum_probs=33.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
.+++|||||.+|+-+|..|++.|.+|+++|+.+++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 58999999999999999999999999999998765
No 331
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.74 E-value=0.013 Score=54.40 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+|+|||+|..|...|..|+++|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999998654
No 332
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.74 E-value=0.012 Score=55.44 Aligned_cols=33 Identities=39% Similarity=0.481 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+|.|||+|..|.+.|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999998743
No 333
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.73 E-value=0.015 Score=48.24 Aligned_cols=30 Identities=37% Similarity=0.587 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
|+|||+|..|+..|+.|++.|++|+++-+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999999999874
No 334
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.57 E-value=0.017 Score=53.69 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|+|||+|..|.+.|..|+++|++|+++|++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999764
No 335
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.55 E-value=0.018 Score=57.72 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=33.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+++|||+|.+|+-+|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 202 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL 202 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence 689999999999999999999999999999987654
No 336
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.46 E-value=0.067 Score=54.92 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=42.1
Q ss_pred ccHHHHHHhcCC--CCcEEeCceeeEEEec-CCCcCeEEe---CCCc--eEEeccEEEEcCChhH
Q 042352 248 CQIPNQIASKLP--FESILLNTRVLSIDFD-EQNMPNVRL---ANGE--TLKSEIGVILAVEEPE 304 (445)
Q Consensus 248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~-~~~~~~V~~---~~g~--~i~a~~~VV~a~~~~~ 304 (445)
..|.+.|.+.+. |++|+.++.++++..+ ++++++|.. .+|+ .+.|+ .||+||+-..
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSK-ATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecC-eEEECCCCcc
Confidence 346666666543 8999999999999875 556777765 3564 47888 7999999865
No 337
>PRK06370 mercuric reductase; Validated
Probab=95.45 E-value=0.021 Score=57.19 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 208 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP 208 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence 36899999999999999999999999999999887653
No 338
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.42 E-value=0.021 Score=57.18 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=33.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+++|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 589999999999999999999999999999987754
No 339
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.41 E-value=0.24 Score=48.08 Aligned_cols=229 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK 124 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 124 (445)
....++|||+|.+|..|+-.|.+.|. +++++-+....-=-- .+..+.....|. .......+++++.++++..
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr--~~Ls~~~~~~~~----~~a~r~~e~Yke~gIe~~~ 146 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDR--ARLSKFLLTVGE----GLAKRTPEFYKEKGIELIL 146 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccc--hhcccceeeccc----cccccChhhHhhcCceEEE
Q ss_pred ecCCcEEEeCCeeEeccCCccchHHHHHhhcCC---ccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC-
Q 042352 125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANP---IGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS- 200 (445)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~- 200 (445)
-..-..+....+.....+......+.+--.... ..............++... .........+..
T Consensus 147 ~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireie------------da~~l~~~~~~~~ 214 (478)
T KOG1336|consen 147 GTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIE------------DANRLVAAIQLGG 214 (478)
T ss_pred cceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHH------------HHHHHHHHhccCc
Q ss_pred -----------HHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCcee
Q 042352 201 -----------DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRV 269 (445)
Q Consensus 201 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V 269 (445)
-++...+...-.....-.+.......++...... .+.+.+++. |+++++++.+
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~--------------~~~~y~e~k--gVk~~~~t~~ 278 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQ--------------FYEDYYENK--GVKFYLGTVV 278 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHH--------------HHHHHHHhc--CeEEEEecce
Q ss_pred eEEEecC-CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcC
Q 042352 270 LSIDFDE-QNMPNVRLANGETLKSEIGVILAVEEPEADKLLR 310 (445)
Q Consensus 270 ~~I~~~~-~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~ 310 (445)
.+++-+. +++..|.+.||+++.|| .||+.++....-+++.
T Consensus 279 s~l~~~~~Gev~~V~l~dg~~l~ad-lvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEVKLKDGKTLEAD-LVVVGIGIKPNTSFLE 319 (478)
T ss_pred eecccCCCCcEEEEEeccCCEeccC-eEEEeecccccccccc
No 340
>PRK07846 mycothione reductase; Reviewed
Probab=95.34 E-value=0.023 Score=56.65 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||||..|+-.|..|++.|.+|+++|+.+++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 3689999999999999999999999999999987654
No 341
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.32 E-value=0.024 Score=56.70 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=33.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+++|||||.+|+-+|..|.+.|.+|+++|+.+.+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll 206 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL 206 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 589999999999999999999999999999987653
No 342
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.27 E-value=0.025 Score=52.49 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999754
No 343
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.27 E-value=0.025 Score=56.62 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il 210 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 4689999999999999999999999999999977653
No 344
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.25 E-value=0.024 Score=56.31 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=33.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+++|||||..|+-.|..|++.|.+|+++|+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 589999999999999999999999999999987764
No 345
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.24 E-value=0.03 Score=56.06 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+++|||+|.+|+-.|..|++.|.+|+++|+.+++..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 36899999999999999999999999999999887653
No 346
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.23 E-value=0.023 Score=52.87 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+|+|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 699999999999999999999999999998643
No 347
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.23 E-value=0.025 Score=56.62 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+++|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l 208 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL 208 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 589999999999999999999999999999876653
No 348
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.23 E-value=0.03 Score=52.81 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|+|||+|..|.+-|..|+++|++|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3579999999999999999999999999998853
No 349
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.027 Score=50.23 Aligned_cols=33 Identities=33% Similarity=0.669 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+++|||+|--|.+.|..|.+.|++|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 699999999999999999999999999998744
No 350
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.17 E-value=0.034 Score=46.92 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCCCcEEEECCCH-HHHHHHHHHHHCCCCEEEEecC
Q 042352 46 ERKDRVIVIGAGL-AGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGaG~-~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
-...+|+|||+|- .|..+|.+|.++|.+|+++.++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3568999999995 7999999999999999999975
No 351
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.16 E-value=0.028 Score=55.61 Aligned_cols=36 Identities=28% Similarity=0.621 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 368999999999999999999999999999988765
No 352
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.028 Score=56.00 Aligned_cols=34 Identities=35% Similarity=0.631 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|+|||+|.+|+.+|..|+++|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999864
No 353
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.11 E-value=0.025 Score=49.55 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=29.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|+|||+|.++.-+|..|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 35789999999999999999999999999998764
No 354
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.01 E-value=0.037 Score=51.99 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+|+|||+|..|...|+.|++.|.+|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 47999999999999999999999999999985
No 355
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.00 E-value=0.032 Score=52.06 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 356
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.98 E-value=0.038 Score=51.65 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||+|..|...|..|++.|++|+++|++.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3569999999999999999999999999999764
No 357
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.98 E-value=0.036 Score=52.27 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999754
No 358
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.98 E-value=0.037 Score=55.17 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||||..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll 205 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL 205 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc
Confidence 3589999999999999999999999999999977653
No 359
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.95 E-value=0.026 Score=51.30 Aligned_cols=43 Identities=35% Similarity=0.556 Sum_probs=38.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC--------CCCCcceeee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS--------DAVGGRVRTD 90 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~--------~~~GG~~~s~ 90 (445)
.-+|+|||+|..|.-||..+.-.|.+|+|+|.+ +..|||+.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~ 218 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL 218 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE
Confidence 568999999999999999999999999999988 5568887765
No 360
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.95 E-value=0.031 Score=54.90 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|.|||.|..|++.|..|+++|++|+++|++..
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 35799999999999999999999999999997643
No 361
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.94 E-value=0.04 Score=46.75 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...|+|+|+|..|+.||..|...|++|+++|.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 478999999999999999999999999999974
No 362
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.94 E-value=0.057 Score=43.90 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~ 80 (445)
+..+++|||||-+|-++++.|.+.|.+ |+|+-|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457899999999999999999999987 9999875
No 363
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=94.93 E-value=0.035 Score=55.74 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=33.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 219 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL 219 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC
Confidence 589999999999999999999999999999987653
No 364
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.63 E-value=0.039 Score=47.71 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=34.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
+.....|.|||||..|...|...+..|++|.+++++...
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 345678999999999999999999999999999987543
No 365
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.57 E-value=0.056 Score=51.41 Aligned_cols=33 Identities=39% Similarity=0.423 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|+++|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 379999999999999999999999999999853
No 366
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.55 E-value=0.052 Score=51.92 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+|.|||+|..|.+.|..|+++|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999974
No 367
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.49 E-value=0.062 Score=53.48 Aligned_cols=36 Identities=25% Similarity=0.545 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+|+|||||.+|+-+|..|.+.|.+|+++++.+++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 368999999999999999999999999999987654
No 368
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.47 E-value=0.046 Score=58.35 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 3579999999999999999999999999999887753
No 369
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.47 E-value=0.051 Score=50.98 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+|+|||+|..|...|..|++.|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999984
No 370
>PTZ00058 glutathione reductase; Provisional
Probab=94.46 E-value=0.051 Score=55.45 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4689999999999999999999999999999987653
No 371
>PRK04148 hypothetical protein; Provisional
Probab=94.45 E-value=0.041 Score=44.17 Aligned_cols=33 Identities=15% Similarity=0.444 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.++++||.| .|.+.|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999997755
No 372
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.45 E-value=0.026 Score=50.06 Aligned_cols=33 Identities=36% Similarity=0.608 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCC
Q 042352 51 VIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAV 83 (445)
Q Consensus 51 viIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~ 83 (445)
.+|||||++|.+||-.|+.. ..+|+++-+++.+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 68999999999999999986 5689999887654
No 373
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.39 E-value=0.069 Score=46.83 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|+|||||-.|...|..|.+.|.+|+|+....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3589999999999999999999999999997643
No 374
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=94.38 E-value=0.028 Score=52.63 Aligned_cols=89 Identities=25% Similarity=0.358 Sum_probs=59.8
Q ss_pred cccccccccccccCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 7 SSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
|.-.+||-+++-.+.+.-|- ...++... ..+.+|||||..||--+..-.+.|.+||++|-.+.+||.
T Consensus 183 SeV~~~PGI~IDekkIVSSt-----gALsL~~v--------Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 183 SEVTPFPGITIDEKKIVSST-----GALSLKEV--------PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred CccCCCCCeEecCceEEecC-----CccchhhC--------cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 44556666666555544333 22222221 246999999999999999999999999999999998874
Q ss_pred eeeeccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352 87 VRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK 124 (445)
Q Consensus 87 ~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 124 (445)
.-. .....++.+++.-|+++..
T Consensus 250 mD~----------------Eisk~~qr~L~kQgikF~l 271 (506)
T KOG1335|consen 250 MDG----------------EISKAFQRVLQKQGIKFKL 271 (506)
T ss_pred cCH----------------HHHHHHHHHHHhcCceeEe
Confidence 210 2245666777666766543
No 375
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.37 E-value=0.058 Score=50.69 Aligned_cols=30 Identities=37% Similarity=0.544 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEA 79 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~ 79 (445)
+|+|||+|..|...|..|+++|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999987
No 376
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.35 E-value=0.056 Score=56.06 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
.+|+|||||..|+-.|..|++.|.+|+++|+.+++..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 5799999999999999999999999999999887653
No 377
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.30 E-value=0.054 Score=54.95 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||||..|+-+|..|++.|.+|+++|+.+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 46899999999999999999999999999986543
No 378
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.23 E-value=0.056 Score=57.94 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 3579999999999999999999999999999987653
No 379
>PRK06116 glutathione reductase; Validated
Probab=94.13 E-value=0.069 Score=53.26 Aligned_cols=36 Identities=33% Similarity=0.397 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 368999999999999999999999999999987654
No 380
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.09 E-value=0.072 Score=50.04 Aligned_cols=32 Identities=31% Similarity=0.581 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~ 81 (445)
+|+|||+|..|.++|+.|+.+| ..|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999999 4899999864
No 381
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.09 E-value=0.085 Score=49.43 Aligned_cols=33 Identities=36% Similarity=0.609 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
.+|+|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 379999999999999999999887 899999743
No 382
>PRK10262 thioredoxin reductase; Provisional
Probab=94.03 E-value=0.081 Score=50.13 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 46899999999999999999999999999998643
No 383
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.00 E-value=0.081 Score=52.68 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999998754
No 384
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.00 E-value=0.048 Score=41.95 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+..+|+|||+|-.|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3568999999999999999999999999999875
No 385
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.99 E-value=0.084 Score=52.50 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 194 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999976553
No 386
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.92 E-value=0.072 Score=50.44 Aligned_cols=31 Identities=29% Similarity=0.553 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+|.|||+|.-||+.|..|++.|++|+.+|..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 6999999999999999999999999999864
No 387
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.92 E-value=0.086 Score=50.84 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...+|+|||+|..|+.+|..|.+.|.+|+++|++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 3467999999999999999999999999999985
No 388
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.90 E-value=0.077 Score=53.02 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999765
No 389
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.85 E-value=0.07 Score=54.68 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+|+|||||..|+-.|..|++.|.+|+++++.+.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 468999999999999999999999999999988753
No 390
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.82 E-value=0.091 Score=50.50 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~ 81 (445)
..+++|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 35799999999999999999999997 99998753
No 391
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.78 E-value=0.11 Score=50.37 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=46.8
Q ss_pred ccccccccccccCCCCcccccccc-CCCCcccccc-cccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 8 SSLLFPSFTINSKPHRFTFNIQAS-SSSSSKQLSL-NSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+.||=++.+.=+.|.-++..-. .++.....+. .........|+|+|+|..|+.+|..|...|.+|+++|.++
T Consensus 160 ~~l~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 160 GKLKFPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCCCEEEecchhhcccccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 346777777665555555544210 0110111111 1112345789999999999999999999999999999864
No 392
>PLN02572 UDP-sulfoquinovose synthase
Probab=93.73 E-value=0.15 Score=50.66 Aligned_cols=33 Identities=33% Similarity=0.600 Sum_probs=29.8
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...|+|.|| |..|...+..|+++|++|+++++.
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~ 80 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL 80 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 457999997 999999999999999999999853
No 393
>PLN02546 glutathione reductase
Probab=93.70 E-value=0.088 Score=53.72 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il 288 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL 288 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence 4589999999999999999999999999999877654
No 394
>PRK12831 putative oxidoreductase; Provisional
Probab=93.70 E-value=0.098 Score=52.29 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34689999999999999999999999999998753
No 395
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.69 E-value=0.12 Score=45.24 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3468999999999999999999999999999764
No 396
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.67 E-value=0.11 Score=52.38 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...|.|||+|..|...|..|+++|++|+++|++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35699999999999999999999999999997754
No 397
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.67 E-value=0.067 Score=48.93 Aligned_cols=35 Identities=23% Similarity=0.533 Sum_probs=30.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CC-CEEEEecC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQ-GR-PFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~-G~-~V~vlE~~ 80 (445)
.++++|+|||||.+|++.|..+.++ |. +|.|+|-.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 3679999999999999999999987 54 89999854
No 398
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.66 E-value=0.091 Score=53.38 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 46899999999999999999999999999987543
No 399
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.60 E-value=0.1 Score=49.51 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||+|..|...|..|++.|++|++++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999863
No 400
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.59 E-value=0.1 Score=49.98 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG-RPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~ 80 (445)
.+|+|||||-.|.++|+.|+++| .+|+|.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 57999999999999999999998 899999987
No 401
>PRK14694 putative mercuric reductase; Provisional
Probab=93.58 E-value=0.1 Score=52.26 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 58999999999999999999999999999874
No 402
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.56 E-value=0.091 Score=52.57 Aligned_cols=34 Identities=26% Similarity=0.186 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 3579999999999999999999999999999654
No 403
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.53 E-value=0.083 Score=51.95 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998644
No 404
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.46 E-value=0.13 Score=45.00 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
...+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999998 69999975
No 405
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=93.45 E-value=0.11 Score=52.13 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 47999999999999999999999999999873
No 406
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.44 E-value=0.13 Score=48.45 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|.+.|..|+++|++|++++++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999864
No 407
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.44 E-value=0.11 Score=52.43 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||+|..|..-|..|+++|++|+++|+++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999763
No 408
>PRK13748 putative mercuric reductase; Provisional
Probab=93.43 E-value=0.1 Score=53.60 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+++|||||..|+-.|..|++.|.+|+|+++..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 3589999999999999999999999999999753
No 409
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.37 E-value=0.12 Score=48.28 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|+|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4689999999999999999999999999999854
No 410
>PTZ00052 thioredoxin reductase; Provisional
Probab=93.34 E-value=0.12 Score=52.28 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999873
No 411
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.32 E-value=0.12 Score=43.58 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=28.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||-|..|...|..|.++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 479999999999999999999999999999763
No 412
>PRK14727 putative mercuric reductase; Provisional
Probab=93.30 E-value=0.12 Score=51.88 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 57999999999999999999999999999974
No 413
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.26 E-value=0.16 Score=42.50 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEe
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLE 78 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE 78 (445)
+..+|+|||||-.|..-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 35689999999999999999999999999995
No 414
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.23 E-value=0.12 Score=51.86 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+|.|||+|..|...|..|+++|++|+++|++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998733
No 415
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.18 E-value=0.12 Score=51.97 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...|+|+|.|.+|++++..|.+.|++|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999999999999999999999999999965
No 416
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.17 E-value=0.12 Score=48.97 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||||..|.+-|..|+++|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999853
No 417
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.13 E-value=0.11 Score=50.80 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+|+|+|-|.+|++||..|.+.|.+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 568999999999999999999999999999976665
No 418
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.10 E-value=0.079 Score=51.13 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=42.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-------------CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHh
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG-------------RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKL 114 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G-------------~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l 114 (445)
..+++|||||++|.=.|..|++.- .+|+++|+.+++.- ++-........+.
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp----------------~~~~~l~~~a~~~ 218 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP----------------MFPPKLSKYAERA 218 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc----------------CCCHHHHHHHHHH
Confidence 357999999999999999998741 27888887766531 1001123456778
Q ss_pred hcccCCccee
Q 042352 115 LDYNALNLQK 124 (445)
Q Consensus 115 ~~~lgl~~~~ 124 (445)
++++|+++..
T Consensus 219 L~~~GV~v~l 228 (405)
T COG1252 219 LEKLGVEVLL 228 (405)
T ss_pred HHHCCCEEEc
Confidence 8888887643
No 419
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.10 E-value=0.1 Score=52.06 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...+|+|||+|..||.|+..+...|.+|.++|.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999999999999999999999875
No 420
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.02 E-value=0.15 Score=50.69 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
...|+|+|.|-+|+++|..|+++|++|++.|.....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 357999999999999999999999999999976543
No 421
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.99 E-value=0.13 Score=51.21 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...++|+|+|-+|+++|..|++.|++|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3569999999999999999999999999999754
No 422
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.98 E-value=0.18 Score=47.68 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~ 82 (445)
..+|+|||||-.|.+.|+.|+..|+ +|+++|.+..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4689999999999999999999996 8999998654
No 423
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.92 E-value=0.13 Score=51.53 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 357999999999999 59999999999999997654
No 424
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.83 E-value=0.15 Score=47.31 Aligned_cols=33 Identities=36% Similarity=0.470 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...|.|||||..|-..|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 357999999999999999999988999999987
No 425
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.74 E-value=0.16 Score=53.66 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...|+|||||..|...|+.++..|++|+++|.+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 45799999999999999999999999999998643
No 426
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.72 E-value=0.19 Score=44.82 Aligned_cols=35 Identities=29% Similarity=0.532 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR---PFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~---~V~vlE~~~ 81 (445)
+..+++|+|||-+|..+|..|.+.|. +|.|++++.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 34689999999999999999999997 499999873
No 427
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.72 E-value=0.15 Score=47.29 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||.|..|.+.|..|.++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999753
No 428
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.67 E-value=0.15 Score=50.78 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=28.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~ 80 (445)
.+|+|||+|..|+..|..|+++| ++|+.+|.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 36999999999999999999985 789999865
No 429
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=92.59 E-value=0.29 Score=50.08 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=37.1
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|.++++++.+++|.. .+++.+|.+.||..+.|+ .||.|++..
T Consensus 201 Gi~~~l~~~t~ei~g-~~~~~~vr~~DG~~i~ad-~VV~a~GIr 242 (793)
T COG1251 201 GIKVLLEKNTEEIVG-EDKVEGVRFADGTEIPAD-LVVMAVGIR 242 (793)
T ss_pred cceeecccchhhhhc-CcceeeEeecCCCcccce-eEEEecccc
Confidence 999999999999987 456789999999999998 899999873
No 430
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.53 E-value=0.19 Score=47.29 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~ 82 (445)
.+|+|||+|..|.+.|+.|+..|. +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999998543
No 431
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.44 E-value=0.21 Score=46.66 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+++|||+|..|..+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35789999999999999999999999999999874
No 432
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.44 E-value=0.25 Score=43.15 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
....++|+|.|-.|..+|..|.+.|++|++.|++.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 44679999999999999999999999999998763
No 433
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.44 E-value=0.18 Score=53.06 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
....|+|||||..|...|+.++.+|++|+++|.+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 446799999999999999999999999999997643
No 434
>PLN00016 RNA-binding protein; Provisional
Probab=92.27 E-value=0.17 Score=49.25 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=30.9
Q ss_pred CCcEEEE----CC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVI----GA-GLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviII----Ga-G~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|+ || |..|...+..|.++|++|+++.|+..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCc
Confidence 3579999 76 99999999999999999999998643
No 435
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.25 E-value=0.21 Score=46.23 Aligned_cols=34 Identities=32% Similarity=0.503 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
..+|+|||+|-+|-++|+.|++.|. +|+|++|+.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3579999999999999999999997 799998863
No 436
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.21 E-value=0.19 Score=50.36 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+|.|+|.|-+|+++|..|.++|++|++.|+.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 46999999999999999999999999999975
No 437
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.15 E-value=0.23 Score=49.57 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
...+|+|||+|..|+-+|..|.+.|. +|+++++.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 35689999999999999999999998 89999874
No 438
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.14 E-value=0.18 Score=50.16 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=28.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3579999999999999999995 9999999954
No 439
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.14 E-value=0.21 Score=48.56 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=27.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||.|..|+..|..++. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 59999999999999988875 99999999763
No 440
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.12 E-value=0.19 Score=49.50 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||-|.+|+++|..|.++|++|++.|++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999754
No 441
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=92.12 E-value=0.2 Score=49.44 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHH--------------CCCCEEEEecCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHS--------------QGRPFVLLEASDAV 83 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~--------------~G~~V~vlE~~~~~ 83 (445)
.+++|||||.+|+-.|..|++ .+.+|+++|+.+.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 379999999999999999986 37889999986553
No 442
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=92.04 E-value=0.19 Score=53.04 Aligned_cols=36 Identities=33% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
....|.|||||..|...|+.++..|++|+++|.++.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 345799999999999999999999999999997643
No 443
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.04 E-value=0.28 Score=40.13 Aligned_cols=31 Identities=39% Similarity=0.559 Sum_probs=28.4
Q ss_pred cEEEECC-CHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 50 RVIVIGA-GLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 50 dviIIGa-G~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
+|+|||| |.-|-+.|+.|...+. ++.++|.+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 6999999 9999999999999965 79999986
No 444
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.03 E-value=0.37 Score=35.56 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=29.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEec
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEA 79 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~ 79 (445)
...+++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346799999999999999999998 678999987
No 445
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.91 E-value=0.24 Score=46.57 Aligned_cols=33 Identities=36% Similarity=0.635 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~ 82 (445)
+|+|||+|-.|.+.|+.|+..| .+|+++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999998 47999998643
No 446
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.90 E-value=0.2 Score=53.92 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=32.2
Q ss_pred CCCCcEEEECCCHHHHHH-HHHHHHCCCCEEEEecCC
Q 042352 46 ERKDRVIVIGAGLAGLAA-ATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsa-A~~L~~~G~~V~vlE~~~ 81 (445)
+...+|.|||.|-+|+++ |..|.++|++|++.|.+.
T Consensus 2 ~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 2 MKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred CCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 445579999999999999 999999999999999754
No 447
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.17 Score=46.96 Aligned_cols=38 Identities=37% Similarity=0.441 Sum_probs=31.5
Q ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352 42 NSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA 79 (445)
Q Consensus 42 ~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~ 79 (445)
..+.-+.+||+|||+|-+|+-||.-|+--=..|+++|=
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF 385 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 385 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeec
Confidence 34455678999999999999999999865568999984
No 448
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.69 E-value=0.27 Score=52.45 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~ 81 (445)
..+|+|||||..|+-+|..|.+.|.+ |+++++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 99998753
No 449
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=91.69 E-value=0.24 Score=35.93 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=24.4
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANG 287 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g 287 (445)
|+++++|+.|++|+.++++ +.|+++||
T Consensus 54 gV~v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 54 GVEVHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp TEEEEESEEEEEEEEETTS-EEEEEETS
T ss_pred CCEEEeCCEEEEEEEeCCE-EEEEEecC
Confidence 9999999999999999887 55988886
No 450
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.67 E-value=0.3 Score=45.89 Aligned_cols=34 Identities=29% Similarity=0.644 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
+.+|+|||+|-.|.++|+.|+..|. .+.++|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4589999999999999999999876 699999754
No 451
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.65 E-value=0.26 Score=39.94 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=29.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
..+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 3579999999999999999999998 79999963
No 452
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.64 E-value=0.23 Score=50.21 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...|.|||.|.+|+++|..|.+.|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3569999999999999999999999999999754
No 453
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.60 E-value=0.24 Score=52.14 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLH-SQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~-~~G~~V~vlE~~~ 81 (445)
....|+|||||..|...|..++ +.|++|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3457999999999999999998 5899999999764
No 454
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.59 E-value=0.28 Score=45.47 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...++|||+|-.|.+.|..|...|.+|++++|+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 455
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.56 E-value=0.23 Score=46.31 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999999874
No 456
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.54 E-value=0.33 Score=38.06 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
|+|+|.|-.|...|..|.+.+.+|+++|++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999998779999998743
No 457
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.50 E-value=0.28 Score=43.61 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=28.9
Q ss_pred cEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIG-AGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.||| +|..|.+.|..|+++|++|+++.++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 599997 79999999999999999999998754
No 458
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.48 E-value=0.26 Score=49.25 Aligned_cols=34 Identities=38% Similarity=0.524 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+++|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998753
No 459
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.44 E-value=0.29 Score=47.43 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=47.0
Q ss_pred ccccccccccccCCCCccccccccCCCCccccc-cc-ccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 8 SSLLFPSFTINSKPHRFTFNIQASSSSSSKQLS-LN-SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..|.||=++.+-=+.|.-+++.-.-.-+.-.-. .. .-+.....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus 153 ~~L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 153 GVLKFPAINVNDAYTKSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCCCCcEEEecchhhchhhhcccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 346777777665455555443221111111101 11 112345789999999999999999999999999999765
No 460
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.26 E-value=0.23 Score=46.50 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+|.|+|+|..|...|+.|++.|.+|+++=|.++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 699999999999999999999988888876553
No 461
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.26 E-value=0.25 Score=46.28 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 51 VIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 51 viIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
|+|||||..|.+.|+.|+..|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999999876 999999864
No 462
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.19 E-value=0.3 Score=51.55 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLH-SQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~-~~G~~V~vlE~~~ 81 (445)
....|+|||||..|...|+.++ ..|++|+++|.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3467999999999999999999 8899999999753
No 463
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.91 E-value=0.38 Score=45.80 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
...+|+|||+|--|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35789999999999999999999998 89999974
No 464
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.87 E-value=0.39 Score=45.32 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~ 81 (445)
..+|+|||||..|.+.|+.|+..| .++.++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999999999999999998 5899999764
No 465
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.85 E-value=0.32 Score=45.47 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||.|..|...|..|+++|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999863
No 466
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.82 E-value=0.29 Score=49.00 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+|.|||.|-+|+++|.+|.+.|++|++.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 47999999999999999999999999999965
No 467
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.77 E-value=0.37 Score=47.99 Aligned_cols=34 Identities=32% Similarity=0.602 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+--|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 3458999999999999999999999999999764
No 468
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.74 E-value=0.36 Score=46.74 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIG-AGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
....|+||| .|..|-+.|..|.++|++|+++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 346799999 89999999999999999999999864
No 469
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.70 E-value=0.38 Score=45.72 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
...+|+|||+|--|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34689999999999999999999998 899999753
No 470
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.68 E-value=0.43 Score=44.98 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
..+|+|||+|-.|-++|+.|+..|. ++.++|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3689999999999999999999987 799999753
No 471
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.64 E-value=0.4 Score=44.17 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...++|+|+|-.|.++|+.|++.|++|+|++|+
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457999999999999999999999999999875
No 472
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.58 E-value=0.48 Score=40.35 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
+|+|||+|-.|...|..|++.|. +++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999998 59999975
No 473
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.57 E-value=0.44 Score=41.38 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=30.2
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...+++|+|| |..|..+|..|++.|++|+++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3468999997 999999999999999999999775
No 474
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.56 E-value=0.48 Score=44.07 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~ 81 (445)
...++|+|||=+|.++|+.|++.|.+ |+|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 45799999999999999999999986 99998864
No 475
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.54 E-value=0.5 Score=39.22 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~ 81 (445)
..+++|||+|..|.+.|..|.+.| .+|++++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 457999999999999999999996 7899998753
No 476
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.51 E-value=0.38 Score=47.74 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||-|-+|++++..|++.|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3579999999999999999999999999999754
No 477
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.37 E-value=0.41 Score=44.83 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=28.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
+|+|||+|-.|.++|+.|..+|. ++.++|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 48999999999999999999876 69999974
No 478
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.25 E-value=0.34 Score=48.18 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+|.|||.|..|.+.|..|+++|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998644
No 479
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.25 E-value=0.8 Score=44.69 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=32.9
Q ss_pred cCCCCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 44 KLERKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 44 ~~~~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+.....|+|+|| |..|...+..|.++|++|+++.|+.
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 3445678999998 9999999999999999999998864
No 480
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=90.21 E-value=0.43 Score=47.31 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..++|+|||+|.||.-.|..|++.|.+|+++=|++.
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 458999999999999999999999999999977544
No 481
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.21 E-value=0.47 Score=43.33 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~ 82 (445)
....|+|||+|-.|..+|..|++.| .+++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 3568999999999999999999999 48999997533
No 482
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.13 E-value=0.33 Score=48.38 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|+|||+|.+|+=.|..|++.+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 45789999999999999999999999999998854
No 483
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.98 E-value=0.47 Score=44.63 Aligned_cols=33 Identities=36% Similarity=0.483 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
.+|+|||+|..|.+.|..|.+.|. +|++++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999985 899998753
No 484
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.94 E-value=0.48 Score=44.30 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 369999999999999999999999999999764
No 485
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.81 E-value=0.63 Score=41.05 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
...+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35789999999999999999999998 59999974
No 486
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.71 E-value=0.47 Score=39.48 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=28.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
....++|+|=|.-|-.+|..|+..|.+|+|.|..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 45789999999999999999999999999999864
No 487
>PLN02602 lactate dehydrogenase
Probab=89.58 E-value=0.68 Score=44.20 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
.+|+|||+|-.|.++|+.|+..|. .+.++|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999999876 699999754
No 488
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.55 E-value=0.64 Score=40.69 Aligned_cols=34 Identities=32% Similarity=0.486 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
...+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 45789999999999999999999997 89999874
No 489
>PLN02494 adenosylhomocysteinase
Probab=89.53 E-value=0.56 Score=46.13 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=32.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 346789999999999999999999999999999865
No 490
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.52 E-value=0.69 Score=43.14 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=30.5
Q ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 46 ERKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+....++|.|| |-.|...|..|+++|++|.++.++.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34467899997 8889999999999999999998763
No 491
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.50 E-value=0.59 Score=42.12 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
...+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35789999999999999999999997 78998874
No 492
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.45 E-value=0.48 Score=51.57 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|+|||||-.|+-+|..+.+.|.+|+++.+.+
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4689999999999999999999999999998764
No 493
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.43 E-value=0.54 Score=45.94 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 45689999999999999999999999999999765
No 494
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=89.32 E-value=0.6 Score=43.16 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~ 80 (445)
..+++|+|+|-+|.++|+.|++.| .+|+|+.|+
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467999999999999999999999 689999886
No 495
>PLN02712 arogenate dehydrogenase
Probab=89.20 E-value=1.1 Score=46.94 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+|.|||.|..|-+.|..|.+.|++|++++++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467999999999999999999999999999876
No 496
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.19 E-value=0.75 Score=43.95 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+.+|.|||+|.-|.+.|..|+++| .|+++-++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~ 38 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRS 38 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence 357999999999999999999999 67777654
No 497
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.15 E-value=0.67 Score=37.94 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999998 79999975
No 498
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=89.10 E-value=0.41 Score=38.86 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=26.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 51 VIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 51 viIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
++|+|||..+...|..++.-|++|+|+|-.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 589999999999999999999999999965
No 499
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=89.04 E-value=0.5 Score=46.84 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+|.|||-|-+|+++|..|.++|++|++.|....
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 378999999999999999999999999997543
No 500
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.03 E-value=0.66 Score=41.95 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35789999999999999999999997 89999864
Done!