Query 042352
Match_columns 445
No_of_seqs 190 out of 2139
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 09:00:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ka7_A Oxidoreductase; structu 100.0 1.7E-38 5.7E-43 312.6 32.3 369 49-445 1-397 (425)
2 4dgk_A Phytoene dehydrogenase; 100.0 1.2E-37 4.1E-42 313.0 25.8 393 48-445 1-463 (501)
3 3nrn_A Uncharacterized protein 100.0 7.7E-37 2.6E-41 300.2 29.2 363 49-445 1-377 (421)
4 2ivd_A PPO, PPOX, protoporphyr 100.0 1.9E-36 6.3E-41 302.5 28.9 381 46-445 14-446 (478)
5 3i6d_A Protoporphyrinogen oxid 100.0 3.3E-37 1.1E-41 307.2 19.9 387 48-445 5-441 (470)
6 1sez_A Protoporphyrinogen oxid 100.0 3.2E-36 1.1E-40 302.8 25.2 390 45-445 10-466 (504)
7 3lov_A Protoporphyrinogen oxid 100.0 8.4E-36 2.9E-40 297.5 24.2 388 47-445 3-438 (475)
8 4gde_A UDP-galactopyranose mut 100.0 4.5E-35 1.6E-39 295.1 25.0 380 46-445 8-448 (513)
9 1s3e_A Amine oxidase [flavin-c 100.0 1.9E-34 6.4E-39 290.7 29.0 384 47-445 3-424 (520)
10 3nks_A Protoporphyrinogen oxid 100.0 1.3E-35 4.6E-40 296.2 19.1 380 49-445 3-447 (477)
11 2vvm_A Monoamine oxidase N; FA 100.0 2.1E-32 7.1E-37 274.3 23.6 374 48-445 39-455 (495)
12 2yg5_A Putrescine oxidase; oxi 100.0 5.4E-33 1.8E-37 275.5 17.9 382 48-445 5-421 (453)
13 4dsg_A UDP-galactopyranose mut 100.0 6.5E-32 2.2E-36 268.6 25.3 361 47-429 8-406 (484)
14 2jae_A L-amino acid oxidase; o 100.0 4.7E-30 1.6E-34 256.8 17.6 335 45-403 8-401 (489)
15 2iid_A L-amino-acid oxidase; f 100.0 2.8E-29 9.4E-34 251.8 18.1 341 46-403 31-403 (498)
16 3k7m_X 6-hydroxy-L-nicotine ox 100.0 1E-26 3.5E-31 228.9 30.5 366 49-445 2-396 (431)
17 1b37_A Protein (polyamine oxid 100.0 1E-27 3.6E-32 238.5 21.9 375 47-445 3-428 (472)
18 1rsg_A FMS1 protein; FAD bindi 100.0 6E-28 2.1E-32 242.8 18.0 273 47-338 7-309 (516)
19 2bcg_G Secretory pathway GDP d 99.9 1.9E-26 6.4E-31 227.8 22.5 338 40-403 3-389 (453)
20 2b9w_A Putative aminooxidase; 99.9 1.1E-25 3.7E-30 221.0 21.7 331 47-400 5-355 (424)
21 1v0j_A UDP-galactopyranose mut 99.9 1E-26 3.4E-31 225.8 13.5 304 45-381 4-320 (399)
22 2xag_A Lysine-specific histone 99.9 6.8E-25 2.3E-29 228.8 24.0 155 238-405 562-739 (852)
23 3qj4_A Renalase; FAD/NAD(P)-bi 99.9 2.5E-24 8.7E-29 205.1 24.9 195 240-445 104-315 (342)
24 1d5t_A Guanine nucleotide diss 99.9 8.9E-25 3E-29 214.4 21.6 330 45-403 3-378 (433)
25 2z3y_A Lysine-specific histone 99.9 2.5E-24 8.4E-29 221.8 25.8 155 238-405 391-568 (662)
26 3hdq_A UDP-galactopyranose mut 99.9 5.2E-25 1.8E-29 211.1 17.3 292 46-378 27-327 (397)
27 2bi7_A UDP-galactopyranose mut 99.9 2.1E-24 7.1E-29 208.2 17.0 293 48-381 3-306 (384)
28 1i8t_A UDP-galactopyranose mut 99.9 1.5E-24 5E-29 208.1 13.6 292 49-379 2-301 (367)
29 4gut_A Lysine-specific histone 99.9 3.1E-23 1.1E-27 215.0 22.3 332 45-405 333-699 (776)
30 3p1w_A Rabgdi protein; GDI RAB 99.9 5.4E-23 1.8E-27 200.8 20.5 250 44-303 16-313 (475)
31 3ayj_A Pro-enzyme of L-phenyla 99.9 2.1E-23 7.2E-28 211.8 7.5 352 48-404 56-583 (721)
32 1yvv_A Amine oxidase, flavin-c 99.9 1.8E-20 6.3E-25 177.8 27.3 288 48-445 2-300 (336)
33 2e1m_A L-glutamate oxidase; L- 99.9 4E-21 1.4E-25 182.6 18.1 245 46-300 42-369 (376)
34 1vg0_A RAB proteins geranylger 99.8 1E-18 3.5E-23 175.3 30.9 186 182-378 309-508 (650)
35 3dje_A Fructosyl amine: oxygen 99.6 7E-14 2.4E-18 137.4 20.0 60 249-310 162-226 (438)
36 3dme_A Conserved exported prot 99.6 1.1E-13 3.7E-18 132.6 20.3 55 249-304 151-209 (369)
37 3nyc_A D-arginine dehydrogenas 99.5 1E-13 3.6E-18 133.4 11.7 53 249-304 155-209 (381)
38 3ps9_A TRNA 5-methylaminomethy 99.4 5.2E-13 1.8E-17 138.2 12.2 54 249-304 418-473 (676)
39 3pvc_A TRNA 5-methylaminomethy 99.4 1.1E-12 3.7E-17 136.0 12.5 55 248-304 412-469 (689)
40 3kkj_A Amine oxidase, flavin-c 99.4 3.5E-13 1.2E-17 123.7 7.6 65 48-112 2-66 (336)
41 3v76_A Flavoprotein; structura 99.4 4.2E-13 1.4E-17 130.2 7.6 42 46-87 25-66 (417)
42 1y56_B Sarcosine oxidase; dehy 99.4 1.2E-12 4.1E-17 126.1 10.5 54 249-304 150-205 (382)
43 2i0z_A NAD(FAD)-utilizing dehy 99.4 1.1E-12 3.9E-17 128.9 9.0 56 248-304 134-191 (447)
44 2gag_B Heterotetrameric sarcos 99.4 4.3E-12 1.5E-16 123.2 12.8 54 249-304 175-230 (405)
45 2uzz_A N-methyl-L-tryptophan o 99.3 1E-11 3.4E-16 119.2 12.4 59 249-311 150-210 (372)
46 3axb_A Putative oxidoreductase 99.3 8E-12 2.7E-16 123.0 9.6 39 47-85 22-61 (448)
47 3da1_A Glycerol-3-phosphate de 99.3 1.3E-10 4.3E-15 117.3 18.3 41 47-87 17-57 (561)
48 1ryi_A Glycine oxidase; flavop 99.3 1.4E-11 4.9E-16 118.5 10.9 41 45-85 14-54 (382)
49 2oln_A NIKD protein; flavoprot 99.3 2.9E-11 9.9E-16 117.1 13.0 38 47-84 3-40 (397)
50 2gqf_A Hypothetical protein HI 99.2 1.6E-11 5.3E-16 118.7 10.0 42 46-87 2-43 (401)
51 4at0_A 3-ketosteroid-delta4-5a 99.2 1E-10 3.5E-15 116.9 15.8 41 47-87 40-80 (510)
52 1pj5_A N,N-dimethylglycine oxi 99.2 5.2E-11 1.8E-15 126.0 13.8 54 249-304 152-207 (830)
53 3nlc_A Uncharacterized protein 99.2 7.4E-11 2.5E-15 117.6 13.4 54 250-304 222-277 (549)
54 3rp8_A Flavoprotein monooxygen 99.2 1.6E-11 5.4E-16 119.3 7.6 58 250-309 129-187 (407)
55 2gf3_A MSOX, monomeric sarcosi 99.2 7.7E-11 2.6E-15 113.6 12.0 53 249-304 151-205 (389)
56 2vou_A 2,6-dihydroxypyridine h 99.1 2.7E-10 9.4E-15 110.2 12.9 57 252-310 103-160 (397)
57 1qo8_A Flavocytochrome C3 fuma 99.1 6.7E-11 2.3E-15 119.7 7.7 41 47-87 120-160 (566)
58 1y0p_A Fumarate reductase flav 99.1 6.4E-10 2.2E-14 112.7 14.9 42 47-88 125-166 (571)
59 2xdo_A TETX2 protein; tetracyc 99.1 5.5E-10 1.9E-14 108.1 13.8 60 249-310 129-189 (398)
60 3i3l_A Alkylhalidase CMLS; fla 99.1 1.2E-10 4E-15 117.8 9.1 41 45-85 20-60 (591)
61 4ap3_A Steroid monooxygenase; 99.1 2.5E-10 8.7E-15 114.6 11.3 50 46-95 19-68 (549)
62 3cgv_A Geranylgeranyl reductas 99.1 1.3E-10 4.5E-15 112.3 7.5 39 47-85 3-41 (397)
63 3o0h_A Glutathione reductase; 99.1 2.4E-10 8.1E-15 113.5 9.2 41 47-88 25-65 (484)
64 2qa1_A PGAE, polyketide oxygen 99.1 1.8E-09 6.2E-14 107.4 15.2 42 43-84 6-47 (500)
65 1w4x_A Phenylacetone monooxyge 99.1 5.1E-10 1.7E-14 112.7 11.3 42 47-88 15-56 (542)
66 4hb9_A Similarities with proba 99.1 3.9E-10 1.3E-14 109.4 10.0 60 249-310 113-173 (412)
67 3gwf_A Cyclohexanone monooxyge 99.0 5.6E-10 1.9E-14 111.9 10.7 48 47-94 7-55 (540)
68 3nix_A Flavoprotein/dehydrogen 99.0 1.1E-09 3.9E-14 106.6 12.7 51 260-311 120-174 (421)
69 4fk1_A Putative thioredoxin re 99.0 1.5E-09 5.1E-14 100.9 12.8 40 45-85 3-42 (304)
70 3ab1_A Ferredoxin--NADP reduct 99.0 1.6E-09 5.3E-14 103.4 12.8 43 45-87 11-53 (360)
71 2x3n_A Probable FAD-dependent 99.0 8.7E-10 3E-14 106.7 10.7 51 260-311 122-174 (399)
72 1rp0_A ARA6, thiazole biosynth 99.0 1.6E-09 5.6E-14 99.6 11.9 40 47-86 38-78 (284)
73 4a9w_A Monooxygenase; baeyer-v 99.0 9.9E-10 3.4E-14 104.3 9.9 41 47-87 2-42 (357)
74 3alj_A 2-methyl-3-hydroxypyrid 99.0 2.9E-09 1E-13 102.2 13.2 39 47-85 10-48 (379)
75 2qa2_A CABE, polyketide oxygen 99.0 3.2E-09 1.1E-13 105.5 13.7 40 45-84 9-48 (499)
76 2rgh_A Alpha-glycerophosphate 99.0 6.9E-09 2.4E-13 104.8 16.2 39 47-85 31-69 (571)
77 3lzw_A Ferredoxin--NADP reduct 99.0 1.3E-09 4.5E-14 102.4 10.1 40 48-87 7-46 (332)
78 2qcu_A Aerobic glycerol-3-phos 99.0 1.5E-09 5.2E-14 108.2 11.0 39 47-85 2-40 (501)
79 2zbw_A Thioredoxin reductase; 99.0 3.1E-09 1E-13 100.2 12.2 41 47-87 4-44 (335)
80 1k0i_A P-hydroxybenzoate hydro 99.0 3.1E-09 1.1E-13 102.6 12.2 51 260-311 117-171 (394)
81 3uox_A Otemo; baeyer-villiger 99.0 2.1E-09 7.1E-14 107.9 11.0 42 47-88 8-49 (545)
82 1d4d_A Flavocytochrome C fumar 99.0 6.5E-10 2.2E-14 112.5 7.3 41 47-87 125-165 (572)
83 3ihg_A RDME; flavoenzyme, anth 99.0 7.6E-10 2.6E-14 111.4 7.6 38 47-84 4-41 (535)
84 3e1t_A Halogenase; flavoprotei 99.0 1.1E-09 3.7E-14 109.5 8.5 37 47-83 6-42 (512)
85 3lxd_A FAD-dependent pyridine 98.9 6.1E-09 2.1E-13 101.2 13.5 43 260-303 208-250 (415)
86 1mo9_A ORF3; nucleotide bindin 98.9 5E-09 1.7E-13 104.9 13.1 45 44-88 39-83 (523)
87 2wdq_A Succinate dehydrogenase 98.9 5.3E-09 1.8E-13 105.9 13.2 39 48-86 7-45 (588)
88 3c96_A Flavin-containing monoo 98.9 3.6E-09 1.2E-13 102.7 11.5 39 46-84 2-41 (410)
89 3f8d_A Thioredoxin reductase ( 98.9 4.5E-09 1.6E-13 98.2 11.8 39 48-88 15-53 (323)
90 4dna_A Probable glutathione re 98.9 9.1E-10 3.1E-14 108.7 7.0 40 48-88 5-44 (463)
91 3c4n_A Uncharacterized protein 98.9 1.1E-09 3.7E-14 106.2 7.4 38 48-85 36-75 (405)
92 3fmw_A Oxygenase; mithramycin, 98.9 2E-09 6.8E-14 108.6 8.9 38 47-84 48-85 (570)
93 3jsk_A Cypbp37 protein; octame 98.9 8.2E-09 2.8E-13 96.1 12.1 41 47-87 78-120 (344)
94 3fg2_P Putative rubredoxin red 98.9 1.2E-08 4E-13 98.8 13.4 54 249-303 185-240 (404)
95 2zxi_A TRNA uridine 5-carboxym 98.9 3.1E-09 1.1E-13 106.5 9.0 43 260-304 138-180 (637)
96 3itj_A Thioredoxin reductase 1 98.9 3.7E-09 1.3E-13 99.6 9.0 43 45-87 19-65 (338)
97 2bry_A NEDD9 interacting prote 98.9 1.3E-08 4.5E-13 101.1 13.3 41 45-85 89-129 (497)
98 2bs2_A Quinol-fumarate reducta 98.9 1.1E-08 3.8E-13 104.6 12.7 40 48-87 5-44 (660)
99 2gv8_A Monooxygenase; FMO, FAD 98.9 5.4E-09 1.8E-13 102.7 9.8 42 47-88 5-48 (447)
100 2h88_A Succinate dehydrogenase 98.9 1.9E-08 6.6E-13 102.0 13.9 40 47-86 17-56 (621)
101 3ces_A MNMG, tRNA uridine 5-ca 98.9 3.6E-09 1.2E-13 106.4 8.3 43 260-304 139-181 (651)
102 2gmh_A Electron transfer flavo 98.9 1.2E-08 4E-13 103.4 12.1 40 48-87 35-80 (584)
103 3iwa_A FAD-dependent pyridine 98.8 1.4E-08 4.9E-13 100.4 12.2 53 249-303 203-257 (472)
104 3atr_A Conserved archaeal prot 98.8 2.7E-09 9.1E-14 105.1 6.7 37 47-83 5-41 (453)
105 2gjc_A Thiazole biosynthetic e 98.8 2.4E-08 8.3E-13 92.4 12.5 41 47-87 64-106 (326)
106 3oz2_A Digeranylgeranylglycero 98.8 1.7E-09 5.8E-14 104.2 4.1 41 46-86 2-42 (397)
107 3s5w_A L-ornithine 5-monooxyge 98.8 1.5E-08 5.2E-13 99.9 10.9 38 47-84 29-71 (463)
108 2v3a_A Rubredoxin reductase; a 98.8 5E-08 1.7E-12 93.7 12.8 53 250-304 189-243 (384)
109 2aqj_A Tryptophan halogenase, 98.8 2.8E-08 9.6E-13 99.9 11.2 44 260-305 179-223 (538)
110 3cp8_A TRNA uridine 5-carboxym 98.7 1.2E-08 4E-13 102.7 7.7 40 46-85 19-59 (641)
111 3fpz_A Thiazole biosynthetic e 98.7 4.4E-09 1.5E-13 98.8 4.4 42 47-88 64-107 (326)
112 3ics_A Coenzyme A-disulfide re 98.7 1.2E-07 4.1E-12 96.4 15.0 39 46-84 34-74 (588)
113 2ywl_A Thioredoxin reductase r 98.7 4.4E-08 1.5E-12 83.3 10.0 33 49-81 2-34 (180)
114 2q0l_A TRXR, thioredoxin reduc 98.7 3.5E-08 1.2E-12 91.8 10.0 38 49-87 2-40 (311)
115 2weu_A Tryptophan 5-halogenase 98.7 5.2E-08 1.8E-12 97.4 11.4 44 260-305 187-231 (511)
116 1chu_A Protein (L-aspartate ox 98.7 1.6E-07 5.3E-12 94.2 13.7 40 47-87 7-46 (540)
117 3k30_A Histamine dehydrogenase 98.7 2.1E-08 7.2E-13 103.8 7.1 71 19-89 361-432 (690)
118 1q1r_A Putidaredoxin reductase 98.7 1.9E-07 6.4E-12 91.1 13.4 53 250-303 193-249 (431)
119 1kf6_A Fumarate reductase flav 98.7 1.8E-07 6.1E-12 94.9 13.4 39 48-86 5-45 (602)
120 2e5v_A L-aspartate oxidase; ar 98.7 7.9E-08 2.7E-12 94.8 10.6 36 50-86 1-36 (472)
121 1jnr_A Adenylylsulfate reducta 98.7 2.4E-07 8.4E-12 94.8 14.4 37 47-83 21-61 (643)
122 3oc4_A Oxidoreductase, pyridin 98.6 3.7E-08 1.3E-12 96.8 7.8 36 49-84 3-40 (452)
123 4gcm_A TRXR, thioredoxin reduc 98.6 1.9E-08 6.7E-13 93.7 5.5 40 48-88 6-45 (312)
124 3ef6_A Toluene 1,2-dioxygenase 98.6 4.8E-07 1.6E-11 87.6 15.1 42 260-303 199-240 (410)
125 4a5l_A Thioredoxin reductase; 98.6 2E-08 6.9E-13 93.5 5.0 37 45-81 1-37 (314)
126 3qvp_A Glucose oxidase; oxidor 98.6 1.6E-07 5.4E-12 94.4 11.6 50 260-309 241-298 (583)
127 3pl8_A Pyranose 2-oxidase; sub 98.6 2E-08 7E-13 102.2 5.0 85 1-87 1-85 (623)
128 3ntd_A FAD-dependent pyridine 98.6 3.6E-07 1.2E-11 92.4 13.1 36 49-84 2-39 (565)
129 3urh_A Dihydrolipoyl dehydroge 98.6 3.6E-08 1.2E-12 98.0 5.1 44 45-88 22-65 (491)
130 1c0p_A D-amino acid oxidase; a 98.5 6.4E-08 2.2E-12 92.2 5.9 40 46-85 4-43 (363)
131 3klj_A NAD(FAD)-dependent dehy 98.5 3.8E-07 1.3E-11 87.4 11.0 39 46-84 7-45 (385)
132 3cty_A Thioredoxin reductase; 98.5 6.6E-08 2.3E-12 90.3 5.0 44 45-89 13-56 (319)
133 4b63_A L-ornithine N5 monooxyg 98.5 3E-07 1E-11 91.4 9.5 42 44-85 35-76 (501)
134 3l8k_A Dihydrolipoyl dehydroge 98.5 5.3E-08 1.8E-12 96.1 3.8 42 47-88 3-44 (466)
135 3q9t_A Choline dehydrogenase a 98.5 2E-07 6.8E-12 93.8 7.6 50 260-309 220-275 (577)
136 1ps9_A 2,4-dienoyl-COA reducta 98.5 2.1E-07 7.3E-12 95.9 7.8 66 19-88 348-413 (671)
137 1o94_A Tmadh, trimethylamine d 98.4 1.7E-07 5.7E-12 97.5 5.9 71 19-89 359-430 (729)
138 2q7v_A Thioredoxin reductase; 98.4 1.4E-07 4.7E-12 88.4 4.7 42 47-89 7-48 (325)
139 2vdc_G Glutamate synthase [NAD 98.4 2.1E-07 7.3E-12 91.1 6.2 43 46-88 120-162 (456)
140 2hqm_A GR, grase, glutathione 98.4 1.4E-07 4.7E-12 93.4 4.2 45 43-88 6-50 (479)
141 3r9u_A Thioredoxin reductase; 98.4 1.5E-07 5.3E-12 87.4 4.3 42 47-89 3-45 (315)
142 3lad_A Dihydrolipoamide dehydr 98.4 2.3E-07 7.9E-12 91.8 5.6 41 47-87 2-42 (476)
143 2cul_A Glucose-inhibited divis 98.4 2.9E-07 9.9E-12 81.7 5.4 44 260-305 83-126 (232)
144 2qae_A Lipoamide, dihydrolipoy 98.4 2.1E-07 7E-12 91.9 4.8 41 48-88 2-42 (468)
145 2r0c_A REBC; flavin adenine di 98.4 2.7E-07 9.1E-12 92.9 5.5 38 48-85 26-63 (549)
146 3qfa_A Thioredoxin reductase 1 98.4 2.8E-07 9.6E-12 92.1 5.7 44 45-88 29-80 (519)
147 3dk9_A Grase, GR, glutathione 98.4 1.9E-07 6.4E-12 92.5 4.1 42 46-88 18-59 (478)
148 1ojt_A Surface protein; redox- 98.4 1.7E-07 6E-12 92.8 3.9 43 46-88 4-46 (482)
149 1zk7_A HGII, reductase, mercur 98.4 2.5E-07 8.6E-12 91.3 5.0 42 46-88 2-43 (467)
150 1v59_A Dihydrolipoamide dehydr 98.4 1.5E-07 5E-12 93.2 3.3 42 47-88 4-45 (478)
151 3vrd_B FCCB subunit, flavocyto 98.3 1.9E-06 6.6E-11 83.1 11.1 42 260-303 216-257 (401)
152 3d1c_A Flavin-containing putat 98.3 2.4E-07 8.2E-12 88.3 4.6 41 47-88 3-44 (369)
153 2dkh_A 3-hydroxybenzoate hydro 98.3 4.9E-07 1.7E-11 92.6 7.1 43 42-84 26-69 (639)
154 2a87_A TRXR, TR, thioredoxin r 98.3 2.4E-07 8.2E-12 87.2 4.4 43 45-88 11-53 (335)
155 2r9z_A Glutathione amide reduc 98.3 2.7E-07 9.1E-12 90.9 4.8 41 47-88 3-43 (463)
156 1zmd_A Dihydrolipoyl dehydroge 98.3 2.2E-07 7.6E-12 91.8 4.0 42 47-88 5-46 (474)
157 1dxl_A Dihydrolipoamide dehydr 98.3 3.6E-07 1.2E-11 90.2 5.4 42 47-88 5-46 (470)
158 1ges_A Glutathione reductase; 98.3 2.5E-07 8.4E-12 90.8 4.0 41 47-88 3-43 (450)
159 3g3e_A D-amino-acid oxidase; F 98.3 2.4E-07 8.3E-12 87.7 3.5 37 49-85 1-43 (351)
160 1vdc_A NTR, NADPH dependent th 98.3 2.5E-07 8.5E-12 86.9 3.5 43 47-89 7-53 (333)
161 1trb_A Thioredoxin reductase; 98.3 2.4E-07 8.2E-12 86.4 3.3 41 47-88 4-44 (320)
162 2yqu_A 2-oxoglutarate dehydrog 98.3 3.7E-07 1.3E-11 89.7 4.6 40 49-88 2-41 (455)
163 3fbs_A Oxidoreductase; structu 98.3 5.3E-07 1.8E-11 83.0 5.3 38 48-85 2-39 (297)
164 3ic9_A Dihydrolipoamide dehydr 98.3 3.3E-07 1.1E-11 90.9 3.9 39 48-87 8-46 (492)
165 3dgh_A TRXR-1, thioredoxin red 98.3 5.1E-07 1.7E-11 89.5 5.2 43 46-88 7-58 (483)
166 3fim_B ARYL-alcohol oxidase; A 98.3 3.4E-06 1.1E-10 84.6 11.2 50 260-309 222-281 (566)
167 2wpf_A Trypanothione reductase 98.3 2.8E-07 9.6E-12 91.5 3.2 43 260-303 249-291 (495)
168 3dgz_A Thioredoxin reductase 2 98.3 4.8E-07 1.6E-11 89.8 4.7 42 47-88 5-54 (488)
169 2jbv_A Choline oxidase; alcoho 98.2 1.4E-05 4.8E-10 80.1 15.0 50 260-309 223-278 (546)
170 1fec_A Trypanothione reductase 98.2 5.2E-07 1.8E-11 89.5 4.4 43 260-303 245-287 (490)
171 2xve_A Flavin-containing monoo 98.2 7.7E-07 2.6E-11 87.6 5.6 41 49-89 3-49 (464)
172 2a8x_A Dihydrolipoyl dehydroge 98.2 4.3E-07 1.5E-11 89.5 3.7 39 48-87 3-41 (464)
173 1lvl_A Dihydrolipoamide dehydr 98.2 4.9E-07 1.7E-11 88.9 3.9 41 47-88 4-44 (458)
174 3ihm_A Styrene monooxygenase A 98.2 7.1E-07 2.4E-11 87.0 4.3 34 48-81 22-55 (430)
175 2eq6_A Pyruvate dehydrogenase 98.2 6.3E-07 2.2E-11 88.3 3.9 39 48-87 6-44 (464)
176 3c4a_A Probable tryptophan hyd 98.2 1E-06 3.4E-11 84.5 5.1 35 49-83 1-37 (381)
177 1xdi_A RV3303C-LPDA; reductase 98.2 5.3E-07 1.8E-11 89.7 3.1 40 48-88 2-44 (499)
178 1ebd_A E3BD, dihydrolipoamide 98.2 8.8E-07 3E-11 87.0 4.4 39 48-87 3-41 (455)
179 1onf_A GR, grase, glutathione 98.2 1E-06 3.5E-11 87.6 4.9 40 48-88 2-41 (500)
180 2e4g_A Tryptophan halogenase; 98.2 1.5E-06 5.2E-11 87.4 5.8 43 260-304 209-252 (550)
181 3g5s_A Methylenetetrahydrofola 98.1 2E-06 6.8E-11 80.6 5.8 39 49-87 2-40 (443)
182 2pyx_A Tryptophan halogenase; 98.1 2E-06 6.9E-11 86.1 6.1 43 260-304 190-233 (526)
183 1fl2_A Alkyl hydroperoxide red 98.1 1.8E-06 6.1E-11 80.1 4.8 39 48-88 1-39 (310)
184 1pn0_A Phenol 2-monooxygenase; 98.1 1.7E-06 5.8E-11 88.9 5.0 59 48-121 8-71 (665)
185 1lqt_A FPRA; NADP+ derivative, 98.1 1.4E-06 4.7E-11 85.4 3.6 42 47-88 2-50 (456)
186 1y56_A Hypothetical protein PH 98.1 1.1E-06 3.7E-11 87.3 2.1 40 48-88 108-147 (493)
187 3kd9_A Coenzyme A disulfide re 98.0 2.7E-06 9.3E-11 83.4 4.9 40 47-86 2-43 (449)
188 2gag_A Heterotetrameric sarcos 98.0 2.8E-06 9.6E-11 90.9 5.1 42 47-88 127-168 (965)
189 1gte_A Dihydropyrimidine dehyd 98.0 4.1E-06 1.4E-10 90.3 5.8 41 47-87 186-227 (1025)
190 3gyx_A Adenylylsulfate reducta 98.0 3.5E-06 1.2E-10 86.0 5.1 38 48-85 22-65 (662)
191 1hyu_A AHPF, alkyl hydroperoxi 98.0 4E-06 1.4E-10 83.7 5.3 41 46-88 210-250 (521)
192 4b1b_A TRXR, thioredoxin reduc 98.0 3.8E-06 1.3E-10 83.8 4.8 52 250-303 265-318 (542)
193 2x8g_A Thioredoxin glutathione 98.0 4.1E-06 1.4E-10 85.3 4.8 35 46-80 105-139 (598)
194 3h28_A Sulfide-quinone reducta 98.0 3.9E-06 1.3E-10 81.8 4.3 38 49-86 3-42 (430)
195 2gqw_A Ferredoxin reductase; f 98.0 6.2E-06 2.1E-10 79.7 5.4 38 47-84 6-45 (408)
196 1ges_A Glutathione reductase; 98.0 2.8E-05 9.7E-10 76.1 10.1 43 260-303 222-264 (450)
197 1cjc_A Protein (adrenodoxin re 97.9 5.5E-06 1.9E-10 81.2 4.7 41 48-88 6-48 (460)
198 3h8l_A NADH oxidase; membrane 97.9 3.8E-06 1.3E-10 81.2 3.5 37 49-85 2-41 (409)
199 2bc0_A NADH oxidase; flavoprot 97.9 9.5E-06 3.2E-10 80.4 5.6 38 48-85 35-75 (490)
200 1kdg_A CDH, cellobiose dehydro 97.9 9.9E-06 3.4E-10 81.4 5.0 37 47-83 6-42 (546)
201 3sx6_A Sulfide-quinone reducta 97.9 7.9E-06 2.7E-10 79.7 4.2 35 48-82 4-41 (437)
202 1m6i_A Programmed cell death p 97.8 8.1E-06 2.8E-10 80.9 4.1 42 260-303 240-281 (493)
203 2cdu_A NADPH oxidase; flavoenz 97.8 9.9E-06 3.4E-10 79.4 4.7 37 49-85 1-39 (452)
204 1nhp_A NADH peroxidase; oxidor 97.8 9.7E-05 3.3E-09 72.2 11.3 37 47-83 148-184 (447)
205 3cgb_A Pyridine nucleotide-dis 97.8 1.2E-05 4E-10 79.5 4.7 38 48-85 36-75 (480)
206 1nhp_A NADH peroxidase; oxidor 97.8 1.3E-05 4.6E-10 78.3 4.7 36 49-84 1-38 (447)
207 2yqu_A 2-oxoglutarate dehydrog 97.8 0.00018 6.1E-09 70.5 12.5 43 260-304 222-264 (455)
208 2eq6_A Pyruvate dehydrogenase 97.8 8.8E-05 3E-09 72.9 10.0 36 48-83 169-204 (464)
209 1ju2_A HydroxynitrIle lyase; f 97.7 9E-06 3.1E-10 81.4 2.4 37 47-84 25-61 (536)
210 3t37_A Probable dehydrogenase; 97.7 1.6E-05 5.4E-10 79.6 4.0 49 260-309 225-276 (526)
211 1v59_A Dihydrolipoamide dehydr 97.7 8.6E-05 2.9E-09 73.2 8.8 36 48-83 183-218 (478)
212 1xhc_A NADH oxidase /nitrite r 97.7 2.1E-05 7.1E-10 74.8 4.1 36 47-83 7-42 (367)
213 2wpf_A Trypanothione reductase 97.7 0.00035 1.2E-08 69.1 13.0 36 48-83 191-229 (495)
214 3s5w_A L-ornithine 5-monooxyge 97.7 0.00067 2.3E-08 66.5 14.9 35 48-82 227-263 (463)
215 1fec_A Trypanothione reductase 97.7 0.00033 1.1E-08 69.2 12.6 37 48-84 187-226 (490)
216 1onf_A GR, grase, glutathione 97.7 0.00038 1.3E-08 69.0 13.0 44 260-304 231-275 (500)
217 2hqm_A GR, grase, glutathione 97.7 0.00038 1.3E-08 68.6 13.0 43 260-303 240-284 (479)
218 2r9z_A Glutathione amide reduc 97.7 0.00032 1.1E-08 68.8 12.4 42 260-303 221-263 (463)
219 1n4w_A CHOD, cholesterol oxida 97.7 3E-05 1E-09 77.0 5.0 38 47-84 4-41 (504)
220 4eqs_A Coenzyme A disulfide re 97.6 3.7E-05 1.3E-09 74.9 4.8 36 49-84 1-38 (437)
221 1coy_A Cholesterol oxidase; ox 97.6 5.3E-05 1.8E-09 75.2 5.0 37 46-82 9-45 (507)
222 2gqw_A Ferredoxin reductase; f 97.6 0.00087 3E-08 64.5 13.4 35 48-82 145-179 (408)
223 1xdi_A RV3303C-LPDA; reductase 97.5 0.00089 3E-08 66.3 13.4 43 260-304 237-279 (499)
224 1ebd_A E3BD, dihydrolipoamide 97.5 0.00025 8.6E-09 69.4 9.1 36 48-83 170-205 (455)
225 4g6h_A Rotenone-insensitive NA 97.5 5E-05 1.7E-09 75.3 4.0 37 46-82 40-76 (502)
226 3hyw_A Sulfide-quinone reducta 97.5 6.8E-05 2.3E-09 72.9 4.4 34 49-82 3-38 (430)
227 2bc0_A NADH oxidase; flavoprot 97.5 0.0015 5.1E-08 64.5 13.9 36 47-82 193-228 (490)
228 1gpe_A Protein (glucose oxidas 97.4 8.7E-05 3E-09 75.0 4.8 37 47-83 23-60 (587)
229 2cdu_A NADPH oxidase; flavoenz 97.4 0.00088 3E-08 65.4 11.6 35 48-82 149-183 (452)
230 1zmd_A Dihydrolipoyl dehydroge 97.4 0.0013 4.3E-08 64.8 12.6 36 48-83 178-213 (474)
231 1ojt_A Surface protein; redox- 97.4 0.00071 2.4E-08 66.7 10.5 35 48-82 185-219 (482)
232 2a8x_A Dihydrolipoyl dehydroge 97.3 0.0018 6.2E-08 63.4 12.7 35 48-82 171-205 (464)
233 1trb_A Thioredoxin reductase; 97.3 0.00067 2.3E-08 62.8 9.0 35 47-81 144-178 (320)
234 2qae_A Lipoamide, dihydrolipoy 97.3 0.002 6.7E-08 63.2 12.6 35 48-82 174-208 (468)
235 3itj_A Thioredoxin reductase 1 97.2 0.0014 4.7E-08 61.0 9.5 43 260-303 223-270 (338)
236 1dxl_A Dihydrolipoamide dehydr 97.1 0.0013 4.4E-08 64.6 9.3 36 48-83 177-212 (470)
237 3lad_A Dihydrolipoamide dehydr 97.1 0.0045 1.5E-07 60.8 13.2 35 48-82 180-214 (476)
238 1m6i_A Programmed cell death p 97.1 0.0029 1E-07 62.4 11.7 35 48-82 180-218 (493)
239 3dgh_A TRXR-1, thioredoxin red 97.1 0.0048 1.6E-07 60.7 12.7 43 260-303 241-288 (483)
240 4b1b_A TRXR, thioredoxin reduc 97.1 0.0051 1.7E-07 61.2 12.8 34 48-81 223-256 (542)
241 3urh_A Dihydrolipoyl dehydroge 97.0 0.003 1E-07 62.3 10.9 35 48-82 198-232 (491)
242 3dk9_A Grase, GR, glutathione 97.0 0.0045 1.5E-07 60.8 12.1 35 48-82 187-221 (478)
243 3dgz_A Thioredoxin reductase 2 96.9 0.01 3.5E-07 58.5 12.9 33 48-80 185-217 (488)
244 3r9u_A Thioredoxin reductase; 96.7 0.0049 1.7E-07 56.5 9.1 35 47-81 146-180 (315)
245 2g1u_A Hypothetical protein TM 96.6 0.0023 7.9E-08 52.3 5.1 40 43-82 14-53 (155)
246 3klj_A NAD(FAD)-dependent dehy 96.5 0.0024 8.3E-08 60.8 5.1 38 48-85 146-183 (385)
247 3fwz_A Inner membrane protein 96.3 0.007 2.4E-07 48.4 6.0 34 48-81 7-40 (140)
248 1lss_A TRK system potassium up 96.2 0.0046 1.6E-07 49.2 4.9 33 49-81 5-37 (140)
249 3llv_A Exopolyphosphatase-rela 96.2 0.0063 2.2E-07 48.7 5.5 34 48-81 6-39 (141)
250 4gcm_A TRXR, thioredoxin reduc 96.2 0.0036 1.2E-07 57.6 4.3 36 48-83 145-180 (312)
251 1id1_A Putative potassium chan 96.1 0.0082 2.8E-07 48.8 5.9 35 47-81 2-36 (153)
252 2v3a_A Rubredoxin reductase; a 96.1 0.0064 2.2E-07 57.8 5.8 38 48-85 145-182 (384)
253 1lvl_A Dihydrolipoamide dehydr 96.1 0.0045 1.5E-07 60.5 4.6 38 48-85 171-208 (458)
254 4e12_A Diketoreductase; oxidor 96.0 0.0062 2.1E-07 55.3 5.2 36 46-81 2-37 (283)
255 3lk7_A UDP-N-acetylmuramoylala 96.0 0.0058 2E-07 59.5 5.1 35 47-81 8-42 (451)
256 1xhc_A NADH oxidase /nitrite r 96.0 0.0059 2E-07 57.7 5.0 36 49-84 144-179 (367)
257 1f0y_A HCDH, L-3-hydroxyacyl-C 95.9 0.0082 2.8E-07 55.0 5.3 32 49-80 16-47 (302)
258 3ic5_A Putative saccharopine d 95.8 0.0078 2.7E-07 46.2 4.3 33 49-81 6-39 (118)
259 2x5o_A UDP-N-acetylmuramoylala 95.8 0.0065 2.2E-07 58.9 4.6 36 49-84 6-41 (439)
260 4a5l_A Thioredoxin reductase; 95.7 0.0076 2.6E-07 55.3 4.4 36 47-82 151-186 (314)
261 2e1m_B L-glutamate oxidase; L- 95.7 0.0049 1.7E-07 48.3 2.5 96 289-405 5-112 (130)
262 3ado_A Lambda-crystallin; L-gu 95.7 0.011 3.8E-07 54.2 5.2 34 48-81 6-39 (319)
263 2hmt_A YUAA protein; RCK, KTN, 95.5 0.015 5.1E-07 46.4 4.9 32 49-80 7-38 (144)
264 2dpo_A L-gulonate 3-dehydrogen 95.4 0.015 5.1E-07 53.6 5.2 34 48-81 6-39 (319)
265 3cgb_A Pyridine nucleotide-dis 95.4 0.01 3.5E-07 58.3 4.2 39 47-85 185-223 (480)
266 3c85_A Putative glutathione-re 95.4 0.018 6.1E-07 48.3 5.1 34 48-81 39-73 (183)
267 3ic9_A Dihydrolipoamide dehydr 95.3 0.017 5.9E-07 56.8 5.6 38 48-85 174-211 (492)
268 1q1r_A Putidaredoxin reductase 95.3 0.019 6.6E-07 55.5 5.8 37 48-84 149-185 (431)
269 3k6j_A Protein F01G10.3, confi 95.3 0.026 9E-07 54.5 6.6 37 46-82 52-88 (460)
270 1bg6_A N-(1-D-carboxylethyl)-L 95.2 0.016 5.5E-07 54.4 4.9 34 47-80 3-36 (359)
271 3ef6_A Toluene 1,2-dioxygenase 95.2 0.019 6.6E-07 55.0 5.4 38 47-84 142-179 (410)
272 3kd9_A Coenzyme A disulfide re 95.2 0.021 7.3E-07 55.4 5.7 38 48-85 148-185 (449)
273 3ghy_A Ketopantoate reductase 95.1 0.022 7.7E-07 52.9 5.5 32 49-80 4-35 (335)
274 3eag_A UDP-N-acetylmuramate:L- 95.1 0.021 7.1E-07 52.9 5.1 35 48-82 4-39 (326)
275 3i83_A 2-dehydropantoate 2-red 95.1 0.02 7E-07 52.8 5.0 33 49-81 3-35 (320)
276 4eqs_A Coenzyme A disulfide re 95.0 0.019 6.5E-07 55.6 4.9 37 48-84 147-183 (437)
277 1pzg_A LDH, lactate dehydrogen 95.0 0.023 7.8E-07 52.7 5.1 33 49-81 10-43 (331)
278 3hn2_A 2-dehydropantoate 2-red 94.9 0.021 7.1E-07 52.6 4.6 33 49-81 3-35 (312)
279 3d1c_A Flavin-containing putat 94.9 0.02 6.7E-07 53.9 4.6 35 48-82 166-200 (369)
280 3l6d_A Putative oxidoreductase 94.9 0.034 1.2E-06 51.0 6.0 35 47-81 8-42 (306)
281 3doj_A AT3G25530, dehydrogenas 94.9 0.024 8.4E-07 52.0 5.0 36 47-82 20-55 (310)
282 2q0l_A TRXR, thioredoxin reduc 94.9 0.023 7.8E-07 52.0 4.7 35 48-82 143-177 (311)
283 3l4b_C TRKA K+ channel protien 94.9 0.025 8.5E-07 49.0 4.7 32 50-81 2-33 (218)
284 2ewd_A Lactate dehydrogenase,; 94.8 0.024 8.3E-07 52.2 4.8 34 48-81 4-38 (317)
285 2ew2_A 2-dehydropantoate 2-red 94.8 0.025 8.7E-07 51.9 4.8 33 49-81 4-36 (316)
286 1t2d_A LDH-P, L-lactate dehydr 94.7 0.031 1.1E-06 51.5 5.2 34 48-81 4-38 (322)
287 2raf_A Putative dinucleotide-b 94.7 0.033 1.1E-06 47.9 5.0 35 48-82 19-53 (209)
288 1zej_A HBD-9, 3-hydroxyacyl-CO 94.7 0.028 9.7E-07 51.0 4.7 34 47-81 11-44 (293)
289 3gwf_A Cyclohexanone monooxyge 94.7 0.023 8E-07 56.6 4.6 36 47-82 177-212 (540)
290 3fg2_P Putative rubredoxin red 94.7 0.031 1E-06 53.5 5.2 37 48-84 142-178 (404)
291 3lxd_A FAD-dependent pyridine 94.7 0.035 1.2E-06 53.3 5.7 38 48-85 152-189 (415)
292 2xve_A Flavin-containing monoo 94.7 0.03 1E-06 54.6 5.2 37 47-83 196-232 (464)
293 1fl2_A Alkyl hydroperoxide red 94.7 0.026 8.9E-07 51.6 4.5 35 48-82 144-178 (310)
294 1zk7_A HGII, reductase, mercur 94.7 0.028 9.5E-07 55.0 5.0 37 48-84 176-212 (467)
295 4dio_A NAD(P) transhydrogenase 94.7 0.033 1.1E-06 52.7 5.2 36 47-82 189-224 (405)
296 2y0c_A BCEC, UDP-glucose dehyd 94.6 0.03 1E-06 54.7 4.9 33 48-80 8-40 (478)
297 3k96_A Glycerol-3-phosphate de 94.6 0.038 1.3E-06 51.8 5.4 33 48-80 29-61 (356)
298 1zcj_A Peroxisomal bifunctiona 94.5 0.034 1.1E-06 54.2 5.1 35 47-81 36-70 (463)
299 3g79_A NDP-N-acetyl-D-galactos 94.5 0.02 6.9E-07 55.7 3.4 36 47-82 17-54 (478)
300 3g17_A Similar to 2-dehydropan 94.5 0.029 9.9E-07 51.1 4.3 33 49-81 3-35 (294)
301 3uox_A Otemo; baeyer-villiger 94.4 0.027 9.3E-07 56.2 4.3 35 48-82 185-219 (545)
302 4a7p_A UDP-glucose dehydrogena 94.4 0.038 1.3E-06 53.4 5.2 35 48-82 8-42 (446)
303 1ks9_A KPA reductase;, 2-dehyd 94.4 0.039 1.3E-06 50.0 5.0 33 50-82 2-34 (291)
304 4ap3_A Steroid monooxygenase; 94.4 0.029 1E-06 56.0 4.5 35 48-82 191-225 (549)
305 3g0o_A 3-hydroxyisobutyrate de 94.4 0.038 1.3E-06 50.6 4.9 34 48-81 7-40 (303)
306 1vdc_A NTR, NADPH dependent th 94.4 0.031 1.1E-06 51.6 4.4 37 47-83 158-194 (333)
307 3qha_A Putative oxidoreductase 94.4 0.03 1E-06 51.1 4.2 35 48-82 15-49 (296)
308 3ntd_A FAD-dependent pyridine 94.4 0.038 1.3E-06 55.4 5.3 37 48-84 151-187 (565)
309 1evy_A Glycerol-3-phosphate de 94.3 0.019 6.5E-07 54.2 2.8 31 50-80 17-47 (366)
310 3dfz_A SIRC, precorrin-2 dehyd 94.3 0.043 1.5E-06 47.5 4.8 34 47-80 30-63 (223)
311 3oc4_A Oxidoreductase, pyridin 94.3 0.043 1.5E-06 53.4 5.4 37 48-84 147-183 (452)
312 4e21_A 6-phosphogluconate dehy 94.3 0.04 1.4E-06 51.6 4.9 37 45-81 19-55 (358)
313 2hjr_A Malate dehydrogenase; m 94.3 0.044 1.5E-06 50.7 5.2 33 49-81 15-48 (328)
314 2gv8_A Monooxygenase; FMO, FAD 94.3 0.041 1.4E-06 53.4 5.2 37 47-83 211-248 (447)
315 2a87_A TRXR, TR, thioredoxin r 94.3 0.035 1.2E-06 51.4 4.6 36 47-82 154-189 (335)
316 3tl2_A Malate dehydrogenase; c 94.3 0.045 1.5E-06 50.2 5.1 34 47-80 7-41 (315)
317 3l8k_A Dihydrolipoyl dehydroge 94.3 0.042 1.5E-06 53.6 5.3 37 48-84 172-208 (466)
318 2q7v_A Thioredoxin reductase; 94.3 0.033 1.1E-06 51.3 4.3 35 48-82 152-186 (325)
319 3mog_A Probable 3-hydroxybutyr 94.2 0.048 1.7E-06 53.3 5.5 34 48-81 5-38 (483)
320 3p2y_A Alanine dehydrogenase/p 94.2 0.035 1.2E-06 52.0 4.3 35 47-81 183-217 (381)
321 1lld_A L-lactate dehydrogenase 94.2 0.042 1.4E-06 50.6 4.9 33 49-81 8-42 (319)
322 4huj_A Uncharacterized protein 94.2 0.029 9.8E-07 48.7 3.5 34 48-81 23-57 (220)
323 3gg2_A Sugar dehydrogenase, UD 94.1 0.043 1.5E-06 53.1 4.9 33 49-81 3-35 (450)
324 3pid_A UDP-glucose 6-dehydroge 94.1 0.043 1.5E-06 52.6 4.7 34 47-81 35-68 (432)
325 2a9f_A Putative malic enzyme ( 94.1 0.042 1.4E-06 51.4 4.5 36 46-81 186-222 (398)
326 1kyq_A Met8P, siroheme biosynt 94.1 0.032 1.1E-06 49.9 3.6 35 47-81 12-46 (274)
327 3dtt_A NADP oxidoreductase; st 94.0 0.054 1.9E-06 47.8 5.0 35 47-81 18-52 (245)
328 2x8g_A Thioredoxin glutathione 94.0 0.047 1.6E-06 55.2 5.1 33 48-80 286-318 (598)
329 2zbw_A Thioredoxin reductase; 94.0 0.037 1.3E-06 51.2 4.0 35 48-82 152-186 (335)
330 2izz_A Pyrroline-5-carboxylate 93.9 0.054 1.9E-06 50.0 5.0 38 44-81 18-59 (322)
331 4dll_A 2-hydroxy-3-oxopropiona 93.9 0.051 1.7E-06 50.2 4.6 34 48-81 31-64 (320)
332 3gvi_A Malate dehydrogenase; N 93.8 0.062 2.1E-06 49.5 5.1 35 47-81 6-41 (324)
333 2vns_A Metalloreductase steap3 93.8 0.073 2.5E-06 45.9 5.3 33 49-81 29-61 (215)
334 1mo9_A ORF3; nucleotide bindin 93.8 0.054 1.9E-06 53.7 5.1 36 49-84 215-250 (523)
335 3hwr_A 2-dehydropantoate 2-red 93.8 0.055 1.9E-06 49.8 4.8 33 47-80 18-50 (318)
336 3cty_A Thioredoxin reductase; 93.8 0.042 1.4E-06 50.5 4.0 35 48-82 155-189 (319)
337 1vl6_A Malate oxidoreductase; 93.8 0.053 1.8E-06 50.6 4.5 35 46-80 190-225 (388)
338 2vdc_G Glutamate synthase [NAD 93.7 0.08 2.7E-06 51.4 6.0 36 47-82 263-299 (456)
339 3ego_A Probable 2-dehydropanto 93.7 0.059 2E-06 49.4 4.7 32 49-81 3-34 (307)
340 2uyy_A N-PAC protein; long-cha 93.7 0.079 2.7E-06 48.7 5.6 35 48-82 30-64 (316)
341 3ics_A Coenzyme A-disulfide re 93.7 0.068 2.3E-06 53.9 5.6 38 48-85 187-224 (588)
342 1z82_A Glycerol-3-phosphate de 93.6 0.063 2.2E-06 49.9 4.9 33 48-80 14-46 (335)
343 3qfa_A Thioredoxin reductase 1 93.6 0.076 2.6E-06 52.6 5.7 33 48-80 210-242 (519)
344 3pef_A 6-phosphogluconate dehy 93.6 0.061 2.1E-06 48.7 4.7 34 49-82 2-35 (287)
345 2v6b_A L-LDH, L-lactate dehydr 93.5 0.065 2.2E-06 49.0 4.7 32 50-81 2-35 (304)
346 3vtf_A UDP-glucose 6-dehydroge 93.5 0.068 2.3E-06 51.3 4.9 34 47-80 20-53 (444)
347 3pdu_A 3-hydroxyisobutyrate de 93.5 0.053 1.8E-06 49.1 4.0 34 49-82 2-35 (287)
348 3oj0_A Glutr, glutamyl-tRNA re 93.4 0.03 1E-06 44.9 2.0 33 48-80 21-53 (144)
349 2o3j_A UDP-glucose 6-dehydroge 93.3 0.062 2.1E-06 52.6 4.5 32 49-80 10-43 (481)
350 3p7m_A Malate dehydrogenase; p 93.3 0.088 3E-06 48.4 5.2 34 48-81 5-39 (321)
351 1hyu_A AHPF, alkyl hydroperoxi 93.3 0.054 1.8E-06 53.7 4.1 35 48-82 355-389 (521)
352 3ab1_A Ferredoxin--NADP reduct 93.3 0.061 2.1E-06 50.4 4.2 36 48-83 163-198 (360)
353 2q3e_A UDP-glucose 6-dehydroge 93.3 0.057 2E-06 52.7 4.1 33 48-80 5-39 (467)
354 2h78_A Hibadh, 3-hydroxyisobut 93.2 0.068 2.3E-06 48.8 4.3 33 49-81 4-36 (302)
355 1mv8_A GMD, GDP-mannose 6-dehy 93.2 0.064 2.2E-06 51.8 4.2 31 50-80 2-32 (436)
356 2wtb_A MFP2, fatty acid multif 93.1 0.093 3.2E-06 54.0 5.6 34 48-81 312-345 (725)
357 3f8d_A Thioredoxin reductase ( 93.1 0.084 2.9E-06 48.3 4.8 37 47-83 153-189 (323)
358 3cky_A 2-hydroxymethyl glutara 93.1 0.074 2.5E-06 48.4 4.4 34 48-81 4-37 (301)
359 3ktd_A Prephenate dehydrogenas 93.0 0.11 3.9E-06 48.1 5.6 33 49-81 9-41 (341)
360 3iwa_A FAD-dependent pyridine 93.0 0.081 2.8E-06 51.7 4.8 37 48-84 159-196 (472)
361 1x13_A NAD(P) transhydrogenase 93.0 0.089 3.1E-06 50.1 4.9 34 48-81 172-205 (401)
362 3gpi_A NAD-dependent epimerase 93.0 0.13 4.3E-06 46.4 5.7 35 48-82 3-37 (286)
363 4gwg_A 6-phosphogluconate dehy 92.9 0.11 3.7E-06 50.6 5.4 34 48-81 4-37 (484)
364 1guz_A Malate dehydrogenase; o 92.9 0.097 3.3E-06 48.0 4.8 32 50-81 2-35 (310)
365 3qsg_A NAD-binding phosphogluc 92.9 0.077 2.6E-06 48.7 4.1 33 48-80 24-57 (312)
366 1x0v_A GPD-C, GPDH-C, glycerol 92.8 0.051 1.7E-06 50.9 2.9 34 49-82 9-49 (354)
367 1l7d_A Nicotinamide nucleotide 92.8 0.11 3.8E-06 49.2 5.2 35 47-81 171-205 (384)
368 1ur5_A Malate dehydrogenase; o 92.8 0.11 3.7E-06 47.6 5.0 33 49-81 3-36 (309)
369 3ldh_A Lactate dehydrogenase; 92.8 0.13 4.4E-06 47.3 5.4 34 47-80 20-55 (330)
370 3e8x_A Putative NAD-dependent 92.7 0.11 3.7E-06 45.3 4.8 36 46-81 19-55 (236)
371 1pjc_A Protein (L-alanine dehy 92.7 0.11 3.9E-06 48.6 5.2 33 49-81 168-200 (361)
372 2zyd_A 6-phosphogluconate dehy 92.7 0.099 3.4E-06 51.1 4.9 35 46-80 13-47 (480)
373 4dna_A Probable glutathione re 92.7 0.11 3.7E-06 50.7 5.2 35 48-82 170-204 (463)
374 1y6j_A L-lactate dehydrogenase 92.7 0.11 3.9E-06 47.7 5.0 34 48-81 7-42 (318)
375 1nyt_A Shikimate 5-dehydrogena 92.7 0.12 4E-06 46.4 5.0 33 48-80 119-151 (271)
376 1txg_A Glycerol-3-phosphate de 92.7 0.082 2.8E-06 48.9 4.1 30 50-79 2-31 (335)
377 4ffl_A PYLC; amino acid, biosy 92.7 0.11 3.9E-06 48.6 5.2 34 49-82 2-35 (363)
378 3l9w_A Glutathione-regulated p 92.7 0.13 4.4E-06 49.2 5.5 34 49-82 5-38 (413)
379 4g65_A TRK system potassium up 92.7 0.047 1.6E-06 53.1 2.5 34 48-81 3-36 (461)
380 3o0h_A Glutathione reductase; 92.6 0.11 3.8E-06 50.9 5.2 36 48-83 191-226 (484)
381 2rcy_A Pyrroline carboxylate r 92.6 0.11 3.7E-06 46.2 4.6 34 49-82 5-42 (262)
382 3pqe_A L-LDH, L-lactate dehydr 92.6 0.11 3.7E-06 47.9 4.7 33 48-80 5-39 (326)
383 3tri_A Pyrroline-5-carboxylate 92.5 0.14 4.9E-06 46.1 5.4 34 48-81 3-39 (280)
384 2pv7_A T-protein [includes: ch 92.5 0.15 5.1E-06 46.4 5.5 34 49-82 22-56 (298)
385 3ggo_A Prephenate dehydrogenas 92.4 0.13 4.6E-06 47.1 5.1 34 48-81 33-68 (314)
386 3phh_A Shikimate dehydrogenase 92.4 0.14 4.8E-06 45.7 5.0 35 48-82 118-152 (269)
387 1jay_A Coenzyme F420H2:NADP+ o 92.4 0.12 4.2E-06 44.2 4.6 31 50-80 2-33 (212)
388 2i6t_A Ubiquitin-conjugating e 92.4 0.11 3.7E-06 47.4 4.3 34 48-81 14-49 (303)
389 3c24_A Putative oxidoreductase 92.3 0.15 5E-06 46.1 5.3 33 49-81 12-45 (286)
390 2cul_A Glucose-inhibited divis 92.3 0.13 4.5E-06 44.8 4.8 35 47-81 2-36 (232)
391 1dlj_A UDP-glucose dehydrogena 92.3 0.09 3.1E-06 50.2 3.9 31 50-81 2-32 (402)
392 2qyt_A 2-dehydropantoate 2-red 92.3 0.076 2.6E-06 48.7 3.3 31 49-79 9-45 (317)
393 1wdk_A Fatty oxidation complex 92.2 0.12 4.2E-06 53.1 5.1 34 48-81 314-347 (715)
394 3lzw_A Ferredoxin--NADP reduct 92.2 0.11 3.7E-06 47.7 4.3 35 48-82 154-188 (332)
395 4ezb_A Uncharacterized conserv 92.2 0.11 3.9E-06 47.7 4.4 33 49-81 25-58 (317)
396 2eez_A Alanine dehydrogenase; 92.2 0.15 5E-06 48.0 5.2 34 48-81 166-199 (369)
397 1a5z_A L-lactate dehydrogenase 92.2 0.11 3.7E-06 47.9 4.1 31 50-80 2-34 (319)
398 1hyh_A L-hicdh, L-2-hydroxyiso 92.1 0.11 3.8E-06 47.5 4.2 32 49-80 2-35 (309)
399 2p4q_A 6-phosphogluconate dehy 92.1 0.17 5.7E-06 49.6 5.6 34 48-81 10-43 (497)
400 1jw9_B Molybdopterin biosynthe 92.0 0.12 4.2E-06 45.6 4.2 34 48-81 31-65 (249)
401 4aj2_A L-lactate dehydrogenase 92.0 0.17 5.8E-06 46.6 5.3 35 46-80 17-53 (331)
402 1p77_A Shikimate 5-dehydrogena 91.9 0.12 4.1E-06 46.4 4.0 33 48-80 119-151 (272)
403 3zwc_A Peroxisomal bifunctiona 91.9 0.19 6.6E-06 51.6 6.0 36 46-81 314-349 (742)
404 2f1k_A Prephenate dehydrogenas 91.8 0.16 5.4E-06 45.7 4.8 32 50-81 2-33 (279)
405 1cjc_A Protein (adrenodoxin re 91.8 0.14 4.7E-06 49.8 4.6 35 48-82 145-200 (460)
406 2egg_A AROE, shikimate 5-dehyd 91.8 0.16 5.5E-06 46.2 4.8 33 48-80 141-174 (297)
407 3fbs_A Oxidoreductase; structu 91.7 0.11 3.7E-06 46.8 3.7 34 48-82 141-174 (297)
408 2g5c_A Prephenate dehydrogenas 91.7 0.17 5.9E-06 45.4 5.0 33 49-81 2-36 (281)
409 1yqg_A Pyrroline-5-carboxylate 91.7 0.14 4.6E-06 45.6 4.2 32 50-81 2-34 (263)
410 2qrj_A Saccharopine dehydrogen 91.7 0.14 4.7E-06 48.1 4.2 39 48-86 214-257 (394)
411 2gf2_A Hibadh, 3-hydroxyisobut 91.7 0.17 5.7E-06 45.9 4.8 32 50-81 2-33 (296)
412 3fi9_A Malate dehydrogenase; s 91.7 0.21 7.3E-06 46.2 5.5 35 46-80 6-43 (343)
413 1yj8_A Glycerol-3-phosphate de 91.6 0.13 4.3E-06 48.6 4.0 34 49-82 22-62 (375)
414 2vhw_A Alanine dehydrogenase; 91.6 0.19 6.4E-06 47.5 5.2 34 48-81 168-201 (377)
415 1edz_A 5,10-methylenetetrahydr 91.6 0.15 5E-06 46.6 4.2 34 47-80 176-210 (320)
416 2iz1_A 6-phosphogluconate dehy 91.6 0.19 6.4E-06 49.1 5.3 33 48-80 5-37 (474)
417 3gt0_A Pyrroline-5-carboxylate 91.5 0.22 7.6E-06 43.8 5.3 33 49-81 3-39 (247)
418 2cvz_A Dehydrogenase, 3-hydrox 91.5 0.16 5.4E-06 45.9 4.4 31 50-81 3-33 (289)
419 1oju_A MDH, malate dehydrogena 91.4 0.15 5.1E-06 46.2 4.1 32 50-81 2-35 (294)
420 2aef_A Calcium-gated potassium 91.4 0.076 2.6E-06 46.4 2.1 35 47-82 8-42 (234)
421 1ldn_A L-lactate dehydrogenase 91.3 0.18 6.3E-06 46.2 4.7 33 48-80 6-40 (316)
422 3d1l_A Putative NADP oxidoredu 91.3 0.16 5.6E-06 45.2 4.3 33 49-81 11-44 (266)
423 3vku_A L-LDH, L-lactate dehydr 91.3 0.18 6.3E-06 46.3 4.6 33 48-80 9-43 (326)
424 3ojo_A CAP5O; rossmann fold, c 91.2 0.15 5.1E-06 48.9 4.1 34 48-81 11-44 (431)
425 3dfu_A Uncharacterized protein 91.2 0.062 2.1E-06 46.7 1.3 32 49-80 7-38 (232)
426 1pjq_A CYSG, siroheme synthase 91.2 0.17 6E-06 49.0 4.6 33 48-80 12-44 (457)
427 3d0o_A L-LDH 1, L-lactate dehy 91.2 0.19 6.4E-06 46.2 4.6 34 47-80 5-40 (317)
428 3u62_A Shikimate dehydrogenase 91.2 0.27 9.3E-06 43.4 5.4 32 50-81 110-142 (253)
429 2pgd_A 6-phosphogluconate dehy 91.2 0.21 7.2E-06 48.8 5.2 33 49-81 3-35 (482)
430 1o94_A Tmadh, trimethylamine d 91.1 0.19 6.5E-06 52.0 5.0 35 47-81 527-563 (729)
431 3dhn_A NAD-dependent epimerase 91.1 0.17 5.6E-06 43.7 4.0 34 48-81 4-38 (227)
432 1vpd_A Tartronate semialdehyde 91.0 0.18 6E-06 45.8 4.2 33 49-81 6-38 (299)
433 2hk9_A Shikimate dehydrogenase 90.9 0.18 6.1E-06 45.3 4.1 33 48-80 129-161 (275)
434 2rir_A Dipicolinate synthase, 90.8 0.24 8.4E-06 45.0 5.0 35 47-81 156-190 (300)
435 1ez4_A Lactate dehydrogenase; 90.8 0.2 6.9E-06 46.0 4.4 34 47-80 4-39 (318)
436 3nep_X Malate dehydrogenase; h 90.8 0.19 6.6E-06 45.9 4.3 32 50-81 2-35 (314)
437 3don_A Shikimate dehydrogenase 90.8 0.21 7.3E-06 44.7 4.5 34 48-81 117-151 (277)
438 1hdo_A Biliverdin IX beta redu 90.8 0.28 9.7E-06 41.3 5.1 33 49-81 4-37 (206)
439 3c7a_A Octopine dehydrogenase; 90.8 0.12 4.1E-06 49.3 3.0 30 49-78 3-33 (404)
440 4hv4_A UDP-N-acetylmuramate--L 90.7 0.16 5.3E-06 49.9 3.8 35 47-81 21-56 (494)
441 1np3_A Ketol-acid reductoisome 90.7 0.29 9.7E-06 45.4 5.4 33 49-81 17-49 (338)
442 3d4o_A Dipicolinate synthase s 90.7 0.26 9E-06 44.6 5.1 35 47-81 154-188 (293)
443 4a9w_A Monooxygenase; baeyer-v 90.7 0.18 6.3E-06 46.6 4.2 32 48-80 163-194 (357)
444 3ius_A Uncharacterized conserv 90.7 0.2 6.8E-06 45.0 4.2 33 49-81 6-38 (286)
445 1pgj_A 6PGDH, 6-PGDH, 6-phosph 90.6 0.24 8.2E-06 48.3 5.0 31 50-80 3-33 (478)
446 2gag_A Heterotetrameric sarcos 90.6 0.13 4.4E-06 55.0 3.3 37 48-84 284-320 (965)
447 3b1f_A Putative prephenate deh 90.6 0.21 7.2E-06 45.1 4.3 34 48-81 6-41 (290)
448 3ond_A Adenosylhomocysteinase; 90.5 0.28 9.7E-06 47.4 5.3 35 47-81 264-298 (488)
449 2d5c_A AROE, shikimate 5-dehyd 90.5 0.29 9.9E-06 43.5 5.0 32 50-81 118-149 (263)
450 2ahr_A Putative pyrroline carb 90.4 0.21 7.3E-06 44.2 4.1 33 49-81 4-36 (259)
451 1gte_A Dihydropyrimidine dehyd 90.4 0.21 7.2E-06 53.8 4.8 33 49-81 333-366 (1025)
452 1w4x_A Phenylacetone monooxyge 90.4 0.21 7E-06 49.8 4.4 35 48-82 186-220 (542)
453 3tnl_A Shikimate dehydrogenase 90.3 0.3 1E-05 44.6 5.0 34 47-80 153-187 (315)
454 3pwz_A Shikimate dehydrogenase 90.2 0.31 1.1E-05 43.5 5.0 34 47-80 119-153 (272)
455 3k30_A Histamine dehydrogenase 90.1 0.28 9.5E-06 50.4 5.2 38 47-84 522-561 (690)
456 3fbt_A Chorismate mutase and s 90.1 0.28 9.6E-06 44.1 4.6 35 47-81 121-156 (282)
457 3ew7_A LMO0794 protein; Q8Y8U8 90.0 0.34 1.1E-05 41.4 5.0 32 50-81 2-34 (221)
458 3jyo_A Quinate/shikimate dehyd 90.0 0.33 1.1E-05 43.7 5.0 34 47-80 126-160 (283)
459 3orq_A N5-carboxyaminoimidazol 89.9 0.43 1.5E-05 45.0 6.0 37 46-82 10-46 (377)
460 4gbj_A 6-phosphogluconate dehy 89.9 0.21 7.2E-06 45.4 3.7 33 49-81 6-38 (297)
461 3vps_A TUNA, NAD-dependent epi 89.8 0.37 1.3E-05 43.9 5.4 35 48-82 7-42 (321)
462 3o8q_A Shikimate 5-dehydrogena 89.7 0.34 1.2E-05 43.5 4.9 34 47-80 125-159 (281)
463 4id9_A Short-chain dehydrogena 89.7 0.36 1.2E-05 44.7 5.3 36 47-82 18-54 (347)
464 3r6d_A NAD-dependent epimerase 89.6 0.49 1.7E-05 40.5 5.7 34 49-82 6-41 (221)
465 1yb4_A Tartronic semialdehyde 89.5 0.19 6.6E-06 45.4 3.2 32 49-81 4-35 (295)
466 1n4w_A CHOD, cholesterol oxida 89.5 0.39 1.3E-05 47.3 5.5 47 260-307 236-291 (504)
467 1i36_A Conserved hypothetical 89.5 0.27 9.3E-06 43.7 4.1 30 50-79 2-31 (264)
468 1nvt_A Shikimate 5'-dehydrogen 89.5 0.26 8.8E-06 44.5 3.9 32 48-80 128-159 (287)
469 3o38_A Short chain dehydrogena 89.5 0.41 1.4E-05 42.4 5.3 35 47-81 21-57 (266)
470 3k5i_A Phosphoribosyl-aminoimi 89.5 0.37 1.3E-05 45.9 5.2 38 41-78 17-54 (403)
471 3h2s_A Putative NADH-flavin re 89.4 0.39 1.3E-05 41.2 4.9 31 50-80 2-33 (224)
472 1ff9_A Saccharopine reductase; 89.2 0.3 1E-05 47.3 4.4 33 48-80 3-35 (450)
473 3t4e_A Quinate/shikimate dehyd 89.1 0.42 1.4E-05 43.6 5.1 34 47-80 147-181 (312)
474 1a4i_A Methylenetetrahydrofola 89.1 0.4 1.4E-05 43.1 4.8 34 47-80 164-198 (301)
475 1lqt_A FPRA; NADP+ derivative, 89.1 0.32 1.1E-05 47.2 4.5 35 48-82 147-202 (456)
476 2dvm_A Malic enzyme, 439AA lon 89.1 0.36 1.2E-05 46.2 4.7 32 47-78 185-219 (439)
477 2d4a_B Malate dehydrogenase; a 89.1 0.36 1.2E-05 44.1 4.6 32 50-81 1-33 (308)
478 2f00_A UDP-N-acetylmuramate--L 89.0 0.33 1.1E-05 47.6 4.6 35 47-81 18-53 (491)
479 3ngx_A Bifunctional protein fo 88.9 0.39 1.3E-05 42.6 4.5 35 46-80 148-183 (276)
480 1npy_A Hypothetical shikimate 88.9 0.44 1.5E-05 42.6 4.9 33 48-80 119-152 (271)
481 1n7h_A GDP-D-mannose-4,6-dehyd 88.9 0.4 1.4E-05 45.0 5.0 34 49-82 29-63 (381)
482 4a26_A Putative C-1-tetrahydro 88.8 0.42 1.4E-05 43.0 4.7 34 47-80 164-198 (300)
483 3rui_A Ubiquitin-like modifier 88.7 0.44 1.5E-05 43.8 4.9 33 48-80 34-67 (340)
484 2r6j_A Eugenol synthase 1; phe 88.7 0.48 1.6E-05 43.2 5.3 34 49-82 12-46 (318)
485 1kdg_A CDH, cellobiose dehydro 88.7 0.48 1.7E-05 47.1 5.7 58 250-309 201-266 (546)
486 3ce6_A Adenosylhomocysteinase; 88.7 0.46 1.6E-05 46.3 5.3 35 47-81 273-307 (494)
487 4b4o_A Epimerase family protei 88.6 0.52 1.8E-05 42.6 5.4 34 50-83 2-36 (298)
488 3obb_A Probable 3-hydroxyisobu 88.6 0.38 1.3E-05 43.7 4.3 34 48-81 3-36 (300)
489 3gvp_A Adenosylhomocysteinase 88.5 0.51 1.7E-05 44.8 5.3 35 47-81 219-253 (435)
490 3h8v_A Ubiquitin-like modifier 88.5 0.33 1.1E-05 43.8 3.8 33 48-80 36-69 (292)
491 2zqz_A L-LDH, L-lactate dehydr 88.4 0.42 1.4E-05 44.0 4.6 33 48-80 9-43 (326)
492 1zud_1 Adenylyltransferase THI 88.4 0.41 1.4E-05 42.2 4.4 33 48-80 28-61 (251)
493 1leh_A Leucine dehydrogenase; 88.3 0.55 1.9E-05 43.8 5.4 34 47-80 172-205 (364)
494 1gpj_A Glutamyl-tRNA reductase 88.3 0.39 1.3E-05 45.7 4.5 35 47-81 166-201 (404)
495 2dbq_A Glyoxylate reductase; D 88.3 0.53 1.8E-05 43.5 5.3 35 48-82 150-184 (334)
496 1lu9_A Methylene tetrahydromet 88.3 0.54 1.8E-05 42.4 5.2 34 47-80 118-152 (287)
497 2yjz_A Metalloreductase steap4 88.0 0.092 3.1E-06 44.7 0.0 35 48-82 19-53 (201)
498 1p3d_A UDP-N-acetylmuramate--a 88.2 0.35 1.2E-05 47.2 4.1 35 47-81 17-52 (475)
499 1coy_A Cholesterol oxidase; ox 88.2 0.52 1.8E-05 46.4 5.4 48 260-308 241-297 (507)
500 4g6h_A Rotenone-insensitive NA 88.2 0.3 1E-05 48.1 3.6 35 49-83 218-266 (502)
No 1
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=100.00 E-value=1.7e-38 Score=312.58 Aligned_cols=369 Identities=18% Similarity=0.179 Sum_probs=270.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhcccCCcceeec
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYNALNLQKFY 126 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~~~ 126 (445)
+||+|||||++||+||++|+++|++|+|||+++++||+++++..+|+.+|.|++++.+ .++.+.++++++|+......
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVR 80 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEe
Confidence 4899999999999999999999999999999999999999999999999999866543 34578889999887654322
Q ss_pred C-CcEEEeC-----------CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHH
Q 042352 127 S-GAKVYYN-----------GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELL 194 (445)
Q Consensus 127 ~-~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 194 (445)
. .....+. ++...+.. .. ......++...... +... .. ...++.++.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~-~~~~-~~----~~~~~~s~~~~l 142 (425)
T 3ka7_A 81 SEMTTVRVPLKKGNPDYVKGFKDISFND----FP--------SLLSYKDRMKIALL-IVST-RK----NRPSGSSLQAWI 142 (425)
T ss_dssp CCCCEEEEESSTTCCSSTTCEEEEEGGG----GG--------GGSCHHHHHHHHHH-HHHT-TT----SCCCSSBHHHHH
T ss_pred cCCceEEeecCCCcccccccccceehhh----hh--------hhCCHHHHHHHHHH-HHhh-hh----cCCCCCCHHHHH
Confidence 1 2222222 22222211 00 01122222211110 0000 00 123468999999
Q ss_pred HHcCCCHHHHHHhhhhhhcccccCCccchHHH-HHHHHHHHhhcCCCccccCccccHHHHHHhcCC--CCcEEeCceeeE
Q 042352 195 RNIGFSDSIIDSFFRPFFGGIFFDKELETSSR-LFDFIFKCLALGDNTIPANGICQIPNQIASKLP--FESILLNTRVLS 271 (445)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~ 271 (445)
++. ++++.++.++.++....++.++.+.+.. .+..+......++..++.||++.++++|++.++ |++|++|++|++
T Consensus 143 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~ 221 (425)
T 3ka7_A 143 KSQ-VSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKGIIDALETVISANGGKIHTGQEVSK 221 (425)
T ss_dssp HHH-CCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred HHh-cCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCEEEECCceeE
Confidence 886 6778888888888877777777777664 333333334557788999999999999998885 999999999999
Q ss_pred EEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCC------c----ccCCCCCcceEEEEEeecCCCCCCCCCe
Q 042352 272 IDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQP------V----KFQRKPARSTVCLYFSADKDEIPVQEPV 341 (445)
Q Consensus 272 I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p------~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 341 (445)
|..+++++++|+++ |++++|+ .||+|+|++.+.+|++++ . .+....+.+.+++++.++++. +.++.
T Consensus 222 i~~~~~~~~gv~~~-g~~~~ad-~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~--~~~~~ 297 (425)
T 3ka7_A 222 ILIENGKAAGIIAD-DRIHDAD-LVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPL--VGHTG 297 (425)
T ss_dssp EEEETTEEEEEEET-TEEEECS-EEEECSCHHHHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCS--SCSSS
T ss_pred EEEECCEEEEEEEC-CEEEECC-EEEECCCHHHHHHhcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCc--cCcCE
Confidence 99988776668775 7789998 799999999999999742 1 234566777889999999885 45565
Q ss_pred EEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCC-ChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCC
Q 042352 342 LFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVM-DDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFA 420 (445)
Q Consensus 342 ~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~-~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 420 (445)
+.++... ..+..++++|..+|+++|+|++++.++....+.... .++.++.++++|+++||+ .+|+...+.+++.+
T Consensus 298 ~~~~~~~-~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~---~~~~~~~v~~~~~~ 373 (425)
T 3ka7_A 298 VLLTPYT-RRINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLKEIFPG---KRYEVLLIQSYHDE 373 (425)
T ss_dssp EEECCSS-SSEEEEECGGGTCGGGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHHHHHHSTT---CCEEEEEEEEEBTT
T ss_pred EEECCCh-hhcceEEeccCCCCCcCCCCCeEEEEEeccccccccchHHHHHHHHHHHHHhCCC---CceEEEEEEEECCC
Confidence 5555542 346678999999999999999999887654443221 246679999999999998 35666677778888
Q ss_pred CCCCCCCCCCCCCCcccCCCCeeeC
Q 042352 421 QPNQSPPTDLIKNPKSEFSLAVYLC 445 (445)
Q Consensus 421 ~~~~~~g~~~~~~~~~t~~~g~~~~ 445 (445)
.|.+.+|.. .+|...||++|||||
T Consensus 374 ~P~~~~~~~-~~~~~~~p~~gL~la 397 (425)
T 3ka7_A 374 WPVNRAASG-TDPGNETPFSGLYVV 397 (425)
T ss_dssp BCSBSSCTT-CCCCSBCSSBTEEEC
T ss_pred ccccccccC-CCCCCCCCcCCeEEe
Confidence 888888844 568899999999998
No 2
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=100.00 E-value=1.2e-37 Score=312.96 Aligned_cols=393 Identities=16% Similarity=0.178 Sum_probs=214.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCC------c
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL------N 121 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl------~ 121 (445)
+++|||||||++||+||++|+++|++|+|||+++++||++++++.+|+.+|.|++++.. ...+.++++.++. +
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~-~~~~~~l~~~~g~~~~~~~~ 79 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD-PSAIEELFALAGKQLKEYVE 79 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBSC-THHHHHHHHTTTCCGGGTCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeecC-chhHHHHHHHhcchhhhcee
Confidence 46899999999999999999999999999999999999999999999999999998753 2344556665553 3
Q ss_pred ceeecCCcEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhh----------------hhcchHHHhc
Q 042352 122 LQKFYSGAKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRV----------------LIKTDEQILT 184 (445)
Q Consensus 122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 184 (445)
+.+..+...+.+ +|....+..........+..+.........++......... .......+..
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (501)
T 4dgk_A 80 LLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAK 159 (501)
T ss_dssp EEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTT
T ss_pred eEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence 333444433333 45555444333333332222211000001111100000000 0000000000
Q ss_pred CC-CCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCC--CC
Q 042352 185 SS-EVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLP--FE 261 (445)
Q Consensus 185 ~~-~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g~ 261 (445)
.. ..++.+++.+. +.++.++.++.... ..++..+...+ ..+.++.......+.++|+||++.|+++|++.++ |+
T Consensus 160 l~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~g~~p~~~~-~~~~~~~~~~~~~G~~~p~GG~~~l~~aL~~~~~~~Gg 236 (501)
T 4dgk_A 160 LQAWRSVYSKVASY-IEDEHLRQAFSFHS-LLVGGNPFATS-SIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGG 236 (501)
T ss_dssp SHHHHHHHHHHHTT-CCCHHHHHHHHHHH-HHHHSCC--CC-CTHHHHHHHHSCCCEEEETTHHHHHHHHHHHHHHHTTC
T ss_pred hhhcccHHHHHHHH-hccHHHHhhhhhhh-cccCCCcchhh-hhhhhhhhhhccCCeEEeCCCCcchHHHHHHHHHHhCC
Confidence 00 12455555543 44444554443211 11222222222 2223333444456778999999999999998875 99
Q ss_pred cEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcCC-Cc------cc-CCCCCcceEEEEEeecC
Q 042352 262 SILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLRQ-PV------KF-QRKPARSTVCLYFSADK 332 (445)
Q Consensus 262 ~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~~-p~------~~-~~~~~~~~~~v~~~~~~ 332 (445)
+|++|++|++|..+++++++|+++||+++.|| +||++++++.+ .+|+++ +. .. ......+.+++++++++
T Consensus 237 ~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad-~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~ 315 (501)
T 4dgk_A 237 EVVLNARVSHMETTGNKIEAVHLEDGRRFLTQ-AVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLNH 315 (501)
T ss_dssp EEECSCCEEEEEEETTEEEEEEETTSCEEECS-CEEECCC---------------------------CCEEEEEEEEESS
T ss_pred ceeeecceeEEEeeCCeEEEEEecCCcEEEcC-EEEECCCHHHHHHHhccccccchhhhhhhhccccCCceeEEEecccC
Confidence 99999999999999988889999999999998 69999988865 567766 22 11 22346778999999998
Q ss_pred CCCCCCCCeEEecCCCC--------------cceEEEEeecccCCCCCCCCceEEEEEecCCCC---C--C--CChHHHH
Q 042352 333 DEIPVQEPVLFLNGSGK--------------GIVNNMFFATNVAPLYGPLDKALISVSLIGLFA---D--V--MDDNLTA 391 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~---~--~--~~~e~~~ 391 (445)
......++.+++..... .....+.++|..||+.+|+|++.+.++....+. + | .++++.+
T Consensus 316 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 395 (501)
T 4dgk_A 316 HHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPHLGTANLDWTVEGPKLRD 395 (501)
T ss_dssp CCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECCTTTSCCCHHHHHHHHHH
T ss_pred CccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCccccccccHHHHHHHHHH
Confidence 86445566665544321 123456778999999999999988876543322 1 1 1467888
Q ss_pred HHHHHHHhHh-CCCcC----------CCceEeeEeecCCC-CCCCCCCC-CCCCCCc-ccCCCCeeeC
Q 042352 392 EVIRELSDWF-GKSTV----------GSWRHLRTYRVRFA-QPNQSPPT-DLIKNPK-SEFSLAVYLC 445 (445)
Q Consensus 392 ~~~~~l~~~~-~~~~~----------~~~~~~~~~~~~~~-~~~~~~g~-~~~~~~~-~t~~~g~~~~ 445 (445)
.+++.|++.+ |+.+. .+|++..-...|.. .....+.+ ..+||.. .||+||||||
T Consensus 396 ~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~ 463 (501)
T 4dgk_A 396 RIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLV 463 (501)
T ss_dssp HHHHHHHHHTCTTHHHHEEEEEEECTTTTC------------------------------CCTTEEEC
T ss_pred HHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEE
Confidence 9999998755 76431 12322100000110 11111122 2357764 5899999998
No 3
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=100.00 E-value=7.7e-37 Score=300.20 Aligned_cols=363 Identities=18% Similarity=0.187 Sum_probs=255.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhc--cChhHHHhhcccCCcc--ee
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT--AYPEAQKLLDYNALNL--QK 124 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~--~~ 124 (445)
+||+|||||++||+||++|+++|++|+|+||++++||+++++..+|+.+|.|++.+.+ ..+.+.++++++++.. ..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVN 80 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEE
Confidence 3899999999999999999999999999999999999999999999999999876544 3457888899888754 34
Q ss_pred ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHH
Q 042352 125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSII 204 (445)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~ 204 (445)
..+...++++|....++..... . ...++... .......... ....++.++.+|+++.+++++.+
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~--------l----~~~~~~~~--~~~~~~~~~~--~~~~~~~s~~~~l~~~g~~~~~~ 144 (421)
T 3nrn_A 81 SNPKGKILWEGKIFHYRESWKF--------L----SVKEKAKA--LKLLAEIRMN--KLPKEEIPADEWIKEKIGENEFL 144 (421)
T ss_dssp CSSSCEEEETTEEEEGGGGGGG--------C----C----------CCHHHHHTT--CCCCCCSBHHHHHHHHTCCCHHH
T ss_pred CCCCeEEEECCEEEEcCCchhh--------C----CHhHHHHH--HHHHHHHHhc--cCCCCCCCHHHHHHHhcCCcHHH
Confidence 4445566677777665432211 0 11111100 0000000000 11223579999999877888888
Q ss_pred HHhhhhhhcccccCCccchHHH-HHHHHHHHhhcCCCccccCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCe
Q 042352 205 DSFFRPFFGGIFFDKELETSSR-LFDFIFKCLALGDNTIPANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPN 281 (445)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~ 281 (445)
+.++.++....++.++.+.++. .+..+......++.++|.||++.++++|++.++ |++|++|++|++|+.++++ +
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-v- 222 (421)
T 3nrn_A 145 LSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEKK-V- 222 (421)
T ss_dssp HHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTE-E-
T ss_pred HHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhcCCcceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCE-E-
Confidence 8888898888888777777664 333333334456788999999999999998774 8999999999999988766 4
Q ss_pred EEeCCCceEEeccEEEEcCChhHHhhhcCC---Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEE
Q 042352 282 VRLANGETLKSEIGVILAVEEPEADKLLRQ---PV----KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNN 354 (445)
Q Consensus 282 V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~---p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (445)
| +.+|++++|+ .||+|++++.+.+|++. |. .+.+..+.+.++++++++++. ...+.+++..+.. +..
T Consensus 223 V-~~~g~~~~ad-~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~--~~~~~~~~~~~~~--~~~ 296 (421)
T 3nrn_A 223 Y-TRDNEEYSFD-VAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEP--RIGNTIVFTPGLM--ING 296 (421)
T ss_dssp E-ETTCCEEECS-EEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESSC--SSCSSEEECTTSS--SCE
T ss_pred E-EeCCcEEEeC-EEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEEEEEcCCc--ccCCeEEEcCCcc--eee
Confidence 5 4577789998 79999999999999973 22 234566778999999999884 4455555555444 778
Q ss_pred EEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCC
Q 042352 355 MFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNP 434 (445)
Q Consensus 355 ~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 434 (445)
++++|+.+|+++|+|++++.++.... ..+.++..+.++++|++++|. .+..++.+|+.+.+.+...+|.+ ++
T Consensus 297 i~~~s~~~p~~ap~G~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~p~---~~~~~~~~~~~~~p~~~~~~~~~-~~-- 368 (421)
T 3nrn_A 297 FNEPSALDKSLAREGYTLIMAHMALK--NGNVKKAIEKGWEELLEIFPE---GEPLLAQVYRDGNPVNRTRAGLH-IE-- 368 (421)
T ss_dssp EECGGGTCGGGSCTTEEEEEEEEECT--TCCHHHHHHHHHHHHHHHCTT---CEEEEEEEC-------------C-CC--
T ss_pred EeccCCCCCCcCCCCceEEEEEEeec--cccHHHHHHHHHHHHHHHcCC---CeEEEeeeccCCCCcccccCCCC-CC--
Confidence 89999999999999999988765321 223356699999999999991 23333455555444444455554 22
Q ss_pred cccCCCCeeeC
Q 042352 435 KSEFSLAVYLC 445 (445)
Q Consensus 435 ~~t~~~g~~~~ 445 (445)
.|+ ||||+|
T Consensus 369 -~~~-~gl~la 377 (421)
T 3nrn_A 369 -WPL-NEVLVV 377 (421)
T ss_dssp -CCC-SSEEEC
T ss_pred -CCC-CcEEEE
Confidence 788 999998
No 4
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=100.00 E-value=1.9e-36 Score=302.50 Aligned_cols=381 Identities=19% Similarity=0.229 Sum_probs=270.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF 125 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 125 (445)
...+||+|||||++||+||+.|+++|++|+|+|+++++||++++.+.+|+.+|.|++++...++.+.++++++|+.....
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~ 93 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIR 93 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCcceee
Confidence 34689999999999999999999999999999999999999999999999999999999877888999999999863222
Q ss_pred -----cCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352 126 -----YSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS 200 (445)
Q Consensus 126 -----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 200 (445)
.....++.+|+...++..... . +......+.++.... . ....... ...++.++.+|+++ .++
T Consensus 94 ~~~~~~~~~~~~~~g~~~~~p~~~~~---~---~~~~~~~~~~~~~~~-~---~~~~~~~--~~~~~~s~~~~l~~-~~~ 160 (478)
T 2ivd_A 94 AADPAAKRRYVYTRGRLRSVPASPPA---F---LASDILPLGARLRVA-G---ELFSRRA--PEGVDESLAAFGRR-HLG 160 (478)
T ss_dssp CSCSSCCCEEEEETTEEEECCCSHHH---H---HTCSSSCHHHHHHHH-G---GGGCCCC--CTTCCCBHHHHHHH-HTC
T ss_pred ecCccccceEEEECCEEEECCCCHHH---h---ccCCCCCHHHHHHHh-h---hhhcCCC--CCCCCCCHHHHHHH-hhC
Confidence 123456677876665433211 1 111222333332211 1 1111100 12467899999987 488
Q ss_pred HHHHHHhhhhhhcccccCCccchHHHHHH-HH--------------HHH----------h-hc----CCCccccCccccH
Q 042352 201 DSIIDSFFRPFFGGIFFDKELETSSRLFD-FI--------------FKC----------L-AL----GDNTIPANGICQI 250 (445)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~----------~-~~----g~~~~~~gG~~~l 250 (445)
++..+.++.+++...|+.++.+.+..... .+ ... . .. ++.+++.||++.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l 240 (478)
T 2ivd_A 161 HRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVL 240 (478)
T ss_dssp HHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHH
T ss_pred HHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHHHH
Confidence 99999999999988888877776543211 00 000 0 11 5678899999999
Q ss_pred HHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEe---CCCceEEeccEEEEcCChhHHhhhcCC-Cc----ccCCCCCcc
Q 042352 251 PNQIASKLPFESILLNTRVLSIDFDEQNMPNVRL---ANGETLKSEIGVILAVEEPEADKLLRQ-PV----KFQRKPARS 322 (445)
Q Consensus 251 ~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~---~~g~~i~a~~~VV~a~~~~~~~~ll~~-p~----~~~~~~~~~ 322 (445)
+++|++.+ |++|++|++|++|+.++++ +.|++ .+|++++|+ +||+|+|++.+.+|+++ |. .+....+.+
T Consensus 241 ~~~l~~~l-g~~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~ad-~vV~a~~~~~~~~ll~~l~~~~~~~l~~~~~~~ 317 (478)
T 2ivd_A 241 IDALAASL-GDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVA-QVVLAAPAHATAKLLRPLDDALAALVAGIAYAP 317 (478)
T ss_dssp HHHHHHHH-GGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECS-EEEECSCHHHHHHHHTTTCHHHHHHHHTCCBCC
T ss_pred HHHHHHHh-hhhEEcCCEEEEEEecCCe-EEEEEeecCCCceEEcC-EEEECCCHHHHHHHhhccCHHHHHHHhcCCCCc
Confidence 99999998 7899999999999988766 88888 778789998 79999999999999876 33 345677889
Q ss_pred eEEEEEeecCCCCCCCCCe-EEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHH
Q 042352 323 TVCLYFSADKDEIPVQEPV-LFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIREL 397 (445)
Q Consensus 323 ~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l 397 (445)
..++++.+++++|+....+ +.++......+..+.+++..+|..+|+|..++.+++.+. +.+.+++++.+.++++|
T Consensus 318 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 397 (478)
T 2ivd_A 318 IAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREEL 397 (478)
T ss_dssp EEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHHH
T ss_pred EEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCCHHHHHHHHHHHH
Confidence 9999999998875542222 223221222355678888777777788888887776554 33568899999999999
Q ss_pred HhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352 398 SDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC 445 (445)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~ 445 (445)
+++||......+ ...+++.++.+...+|.... ++...+ ++|||+|
T Consensus 398 ~~~~~~~~~p~~--~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~a 446 (478)
T 2ivd_A 398 KALAGVTARPSF--TRVFRWPLGIPQYNLGHLERVAAIDAALQR-LPGLHLI 446 (478)
T ss_dssp HHHHCCCSCCSE--EEEEEESSCCBCCBTTHHHHHHHHHHHHHT-STTEEEC
T ss_pred HHHhCCCCCCcE--EEEEECCCcccCCCcCHHHHHHHHHHHHhh-CCCEEEE
Confidence 999997543333 34567777777777775311 112222 6899987
No 5
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=100.00 E-value=3.3e-37 Score=307.25 Aligned_cols=387 Identities=18% Similarity=0.236 Sum_probs=272.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC------CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG------RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN 121 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G------~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 121 (445)
++||+|||||++||+||++|+++| ++|+|||+++++||++.+...+|+.+|.|++++...++.+.++++++|+.
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 84 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLE 84 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHHTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHHcCCc
Confidence 479999999999999999999999 99999999999999999999999999999999888889999999999987
Q ss_pred ceee---cCCcEEEeCCeeEeccCCc--cchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHH
Q 042352 122 LQKF---YSGAKVYYNGQFHTVADPF--RHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRN 196 (445)
Q Consensus 122 ~~~~---~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 196 (445)
.... .....++.+++...++... ..+......+........+++......+ .. .....++.++.+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~s~~~~~~~ 158 (470)
T 3i6d_A 85 HLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFI----LP--ASKTKDDQSLGEFFRR 158 (470)
T ss_dssp TTEEECCCCCEEEECSSCEEECCC---------------------CCSHHHHHHHH----SC--CCSSSSCCBHHHHHHH
T ss_pred ceeecCCCCccEEEECCEEEECCCCcccCCcCchHHhhccCcCCHHHHHHHhcCcc----cC--CCCCCCCcCHHHHHHH
Confidence 5432 2334556677766654321 0111110000011111111111111100 00 0123457899999987
Q ss_pred cCCCHHHHHHhhhhhhcccccCCccchHHHHHHH-----------HHHH---------------hhcCCCccccCccccH
Q 042352 197 IGFSDSIIDSFFRPFFGGIFFDKELETSSRLFDF-----------IFKC---------------LALGDNTIPANGICQI 250 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---------------~~~g~~~~~~gG~~~l 250 (445)
.++.+..+.++.+++.++|..+..+.+...... +... ...+..+++.+|++.+
T Consensus 159 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l 237 (470)
T 3i6d_A 159 -RVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTL 237 (470)
T ss_dssp -HSCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-------------------------------EEEETTCTHHH
T ss_pred -hcCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHHHH
Confidence 478888999999999999998877766532110 0000 0023466889999999
Q ss_pred HHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEE
Q 042352 251 PNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLY 327 (445)
Q Consensus 251 ~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~ 327 (445)
+++|++.++.++|++|++|++|+.++++ +.|++.+|++++|+ +||+|+|++.+.+|+.+++ .+..+.+.++.+++
T Consensus 238 ~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~ad-~vi~a~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~ 315 (470)
T 3i6d_A 238 VEEIEKQLKLTKVYKGTKVTKLSHSGSC-YSLELDNGVTLDAD-SVIVTAPHKAAAGMLSELPAISHLKNMHSTSVANVA 315 (470)
T ss_dssp HHHHHHTCCSEEEECSCCEEEEEECSSS-EEEEESSSCEEEES-EEEECSCHHHHHHHTTTSTTHHHHHTCEEEEEEEEE
T ss_pred HHHHHHhcCCCEEEeCCceEEEEEcCCe-EEEEECCCCEEECC-EEEECCCHHHHHHHcCCchhhHHHhcCCCCceEEEE
Confidence 9999999854799999999999988765 78999999889998 7999999999999988754 45667888999999
Q ss_pred EeecCCCCCCCC--CeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHh
Q 042352 328 FSADKDEIPVQE--PVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWF 401 (445)
Q Consensus 328 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~ 401 (445)
+.|++++|+... ..+.++......+..++|+|...+...|+|..++.+++.+. +.+++++++++.++++|+++|
T Consensus 316 l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (470)
T 3i6d_A 316 LGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVM 395 (470)
T ss_dssp EEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGGS
T ss_pred EEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHHHHh
Confidence 999999864321 22233433333456778888878888888888888776543 346789999999999999999
Q ss_pred CCCcCCCceEeeEeecCCCCCCCCCCCCC----CCCCcccCCCCeeeC
Q 042352 402 GKSTVGSWRHLRTYRVRFAQPNQSPPTDL----IKNPKSEFSLAVYLC 445 (445)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~t~~~g~~~~ 445 (445)
|..... .....++++++.|...+|... .++...++.+|||+|
T Consensus 396 g~~~~p--~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~a 441 (470)
T 3i6d_A 396 NINGEP--EMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMT 441 (470)
T ss_dssp CCCSCC--SEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEEC
T ss_pred CCCCCc--eEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 875322 234556666777777777531 233344568899987
No 6
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=100.00 E-value=3.2e-36 Score=302.79 Aligned_cols=390 Identities=18% Similarity=0.193 Sum_probs=267.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK 124 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 124 (445)
|.+.+||+|||||++||+||+.|+++|++|+|+|+++++||++.+...+|+.+|.|++++...++.+.++++++|+....
T Consensus 10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~~ 89 (504)
T 1sez_A 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQ 89 (504)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGE
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCcccc
Confidence 34568999999999999999999999999999999999999999999999999999999987788899999999986432
Q ss_pred ec----CCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352 125 FY----SGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS 200 (445)
Q Consensus 125 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 200 (445)
.. ....++.+|+...++.... ... ........+++......+........ ....++.++.+|+++. ++
T Consensus 90 ~~~~~~~~~~~~~~g~~~~~p~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~l~~~-~~ 161 (504)
T 1sez_A 90 QFPLSQNKRYIARNGTPVLLPSNPI---DLI---KSNFLSTGSKLQMLLEPILWKNKKLS-QVSDSHESVSGFFQRH-FG 161 (504)
T ss_dssp ECCSSCCCEEEESSSSEEECCSSHH---HHH---HSSSSCHHHHHHHHTHHHHC-----------CCCBHHHHHHHH-HC
T ss_pred eeccCCCceEEEECCeEEECCCCHH---HHh---ccccCCHHHHHHHhHhhhccCccccc-ccCCCCccHHHHHHHH-cC
Confidence 21 1233455666665543211 111 11222223333222111111000000 0123468999999875 88
Q ss_pred HHHHHHhhhhhhcccccCCccchHHHHH-----HHH-----------HHHh------------------hcCCCccccCc
Q 042352 201 DSIIDSFFRPFFGGIFFDKELETSSRLF-----DFI-----------FKCL------------------ALGDNTIPANG 246 (445)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~------------------~~g~~~~~~gG 246 (445)
++.++.++.+++.+.|+.++.+.+.... ... ...+ ...+.+++.||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG 241 (504)
T 1sez_A 162 KEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGG 241 (504)
T ss_dssp HHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTC
T ss_pred HHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcH
Confidence 9999999999999989888777654321 110 0000 01246789999
Q ss_pred cccHHHHHHhcCCCCcEEeCceeeEEEecCCCc-----CeEEeC--CC---ceEEeccEEEEcCChhHHhhhcCC----C
Q 042352 247 ICQIPNQIASKLPFESILLNTRVLSIDFDEQNM-----PNVRLA--NG---ETLKSEIGVILAVEEPEADKLLRQ----P 312 (445)
Q Consensus 247 ~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~-----~~V~~~--~g---~~i~a~~~VV~a~~~~~~~~ll~~----p 312 (445)
++.|+++|++.++.++|++|++|++|..++++. +.|++. +| ++++|| +||+|+|++.+.+++.+ |
T Consensus 242 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad-~VI~a~p~~~l~~ll~~~~~~~ 320 (504)
T 1sez_A 242 MQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFD-AVIMTAPLCDVKSMKIAKRGNP 320 (504)
T ss_dssp THHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEES-EEEECSCHHHHHTSEEESSSSB
T ss_pred HHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECC-EEEECCCHHHHHHHhhcccCCc
Confidence 999999999998327999999999999887663 566664 45 578898 79999999999998831 1
Q ss_pred --c-ccCCCCCcceEEEEEeecCCCCCC--CCCeEEecCCCC---cceEEEEeecccCCCCCCCCceEEEEEecCC----
Q 042352 313 --V-KFQRKPARSTVCLYFSADKDEIPV--QEPVLFLNGSGK---GIVNNMFFATNVAPLYGPLDKALISVSLIGL---- 380 (445)
Q Consensus 313 --~-~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~---- 380 (445)
. .+....+.+..++++.|++++|+. ....+.++.... ..+.++++.|..+|..+|+|.+++.++..+.
T Consensus 321 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~ 400 (504)
T 1sez_A 321 FLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRE 400 (504)
T ss_dssp CCCTTSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGG
T ss_pred ccHHHHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEEeCCCCccc
Confidence 1 345667778999999999887542 223334433221 1345677778888888898988887776543
Q ss_pred CCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCC---CCcccCCCCeeeC
Q 042352 381 FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIK---NPKSEFSLAVYLC 445 (445)
Q Consensus 381 ~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~t~~~g~~~~ 445 (445)
+..++++++++.++++|++++|......+ ....++.++.|...+|..... +...++++|||+|
T Consensus 401 ~~~~~~ee~~~~v~~~L~~~~g~~~~p~~--~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~a 466 (504)
T 1sez_A 401 LAKASRTELKEIVTSDLKQLLGAEGEPTY--VNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYA 466 (504)
T ss_dssp GTTCCHHHHHHHHHHHHHHHHCBCSCCSS--EEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEEC
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCCCCeE--EEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999999999999997432222 445566666777777753211 1234678999997
No 7
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=100.00 E-value=8.4e-36 Score=297.48 Aligned_cols=388 Identities=18% Similarity=0.238 Sum_probs=277.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK 124 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 124 (445)
.++||+|||||++||+||++|+++| ++|+|+|+++++||++.+...+|+.+|.|++++...++.+.++++++|++...
T Consensus 3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~~ 82 (475)
T 3lov_A 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGEKL 82 (475)
T ss_dssp CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCGGGE
T ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCcceE
Confidence 3579999999999999999999999 99999999999999999999999999999999888888999999999987544
Q ss_pred e---cCCcEEEeCCeeEeccCCc--cchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCC
Q 042352 125 F---YSGAKVYYNGQFHTVADPF--RHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGF 199 (445)
Q Consensus 125 ~---~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 199 (445)
. .....++.+|+...++... ..+......+........++. ....+.... ........++.++.+|+++ .+
T Consensus 83 ~~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~s~~~~l~~-~~ 158 (475)
T 3lov_A 83 VRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQ--EVADLLLHP-SDSLRIPEQDIPLGEYLRP-RL 158 (475)
T ss_dssp EECCCCCEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCHHHHH--HHHHHHHSC-CTTCCCCSSCCBHHHHHHH-HH
T ss_pred eecCCCceEEEECCEEEECCCcccccCcCchHHHhhccCCChhHHH--HhhCcccCC-cccccCCCCCcCHHHHHHH-Hh
Confidence 3 2335566788877765432 111111111222333333333 111111100 0000113457899999987 47
Q ss_pred CHHHHHHhhhhhhcccccCCccchHHH-----HHHH------HHHH-h-----------------hcCCCccccCccccH
Q 042352 200 SDSIIDSFFRPFFGGIFFDKELETSSR-----LFDF------IFKC-L-----------------ALGDNTIPANGICQI 250 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~~-~-----------------~~g~~~~~~gG~~~l 250 (445)
+.+..+.++.+++.+.|+.+..+.+.. +... +... . ..+..+++.+|++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l 238 (475)
T 3lov_A 159 GDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESL 238 (475)
T ss_dssp CHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETTCHHHH
T ss_pred CHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCChHHHH
Confidence 789999999999999999887766532 1110 0000 0 123567899999999
Q ss_pred HHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc--ccCCCCCcceEEEEE
Q 042352 251 PNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV--KFQRKPARSTVCLYF 328 (445)
Q Consensus 251 ~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~--~~~~~~~~~~~~v~~ 328 (445)
+++|++.++.++|++|++|++|+.++++ +.|++.+| +++|+ +||+|+|++.+.+|++++. .+..+.+.++.++++
T Consensus 239 ~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g-~~~ad-~vV~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~v~l 315 (475)
T 3lov_A 239 IERLEEVLERSEIRLETPLLAISREDGR-YRLKTDHG-PEYAD-YVLLTIPHPQVVQLLPDAHLPELEQLTTHSTATVTM 315 (475)
T ss_dssp HHHHHHHCSSCEEESSCCCCEEEEETTE-EEEECTTC-CEEES-EEEECSCHHHHHHHCTTSCCHHHHTCCEEEEEEEEE
T ss_pred HHHHHhhccCCEEEcCCeeeEEEEeCCE-EEEEECCC-eEECC-EEEECCCHHHHHHHcCccCHHHHhcCCCCeEEEEEE
Confidence 9999999854799999999999988765 77888899 79998 7999999999999998753 345678889999999
Q ss_pred eecCCCCCCCC-C-eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhC
Q 042352 329 SADKDEIPVQE-P-VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFG 402 (445)
Q Consensus 329 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~ 402 (445)
.|++++ ..+. . .+.++......+..++|.|...+...|+ ..++.+++.+. +.+++++++++.++++|+++||
T Consensus 316 ~~~~~~-~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~g 393 (475)
T 3lov_A 316 IFDQQQ-SLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPD-HTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICG 393 (475)
T ss_dssp EEECCS-SCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTT-EEEEEEEECBTTBCGGGGSCHHHHHHHHHHHHHHHHS
T ss_pred EECCcC-CCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCC-cEEEEEEeCCCCCCcccCCCHHHHHHHHHHHHHHHhC
Confidence 999886 2221 2 2233333233466788888888888887 66676665433 3467899999999999999999
Q ss_pred CCcCCCceEeeEeecCCCCCCCCCCCC----CCCCCcccCCCCeeeC
Q 042352 403 KSTVGSWRHLRTYRVRFAQPNQSPPTD----LIKNPKSEFSLAVYLC 445 (445)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~t~~~g~~~~ 445 (445)
......+ ..++++.++.|...+|.. ..++...++++|||+|
T Consensus 394 ~~~~p~~--~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~a 438 (475)
T 3lov_A 394 RTLEPKQ--VIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLA 438 (475)
T ss_dssp SCCCCSE--EEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEEC
T ss_pred CCCCCeE--EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Confidence 7543333 455667777787888763 2234444668999997
No 8
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=100.00 E-value=4.5e-35 Score=295.09 Aligned_cols=380 Identities=16% Similarity=0.170 Sum_probs=262.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcceeee-ccCCeeecccccchhccChhHHHhhcccCC---
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGRVRTD-SVDGFLLDRGFQIFITAYPEAQKLLDYNAL--- 120 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl--- 120 (445)
...+||+|||||++||+||++|+++ |++|+|||+++++||+++|. ..+|+.+|.|+|+|+..++.+.+++++++.
T Consensus 8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~~e~~~~~~ 87 (513)
T 4gde_A 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKED 87 (513)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHHHHHSCSGG
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHHHHhCCccc
Confidence 3468999999999999999999984 99999999999999999985 678999999999998888999999988764
Q ss_pred cceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352 121 NLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS 200 (445)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 200 (445)
++....+...++++|++..++- ...+... ......+....+..... ..........++.+|+.+ .++
T Consensus 88 ~~~~~~~~~~i~~~g~~~~~p~--~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~-~~g 154 (513)
T 4gde_A 88 DWYTHQRISYVRCQGQWVPYPF--QNNISML------PKEEQVKCIDGMIDAAL----EARVANTKPKTFDEWIVR-MMG 154 (513)
T ss_dssp GEEEEECCEEEEETTEEEESSG--GGGGGGS------CHHHHHHHHHHHHHHHH----HHHTCCSCCCSHHHHHHH-HHH
T ss_pred eeEEecCceEEEECCeEeecch--hhhhhhc------chhhHHHHHHHHHHHHH----hhhcccccccCHHHHHHH-hhh
Confidence 3445566678888998876642 1111100 00000111111111000 011123446789999976 477
Q ss_pred HHHHHHhhhhhhcccccCCccchHHHHH----------HHHHHHh---hcC-------CCccccCccccHHHHHHhcCC-
Q 042352 201 DSIIDSFFRPFFGGIFFDKELETSSRLF----------DFIFKCL---ALG-------DNTIPANGICQIPNQIASKLP- 259 (445)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~---~~g-------~~~~~~gG~~~l~~~l~~~l~- 259 (445)
+.+.+.++.++..++|+.+..+.+..+. ....... ..+ ..+.++||++.++++|++.++
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~ 234 (513)
T 4gde_A 155 TGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPK 234 (513)
T ss_dssp HHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSSHHHHHHHHHHHTSCG
T ss_pred hhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccCCHHHHHHHHHHHHHh
Confidence 8888999999999998887766543211 1111111 111 123458999999999999997
Q ss_pred -CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc---ccCCCCCcceEEEEEeecCCCC
Q 042352 260 -FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV---KFQRKPARSTVCLYFSADKDEI 335 (445)
Q Consensus 260 -g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~---~~~~~~~~~~~~v~~~~~~~~~ 335 (445)
|++|++|++|++|..+++ .|++.+|+++.|+ +||+|+|+..+.+++.++. ....+.+.+...+++.++....
T Consensus 235 ~g~~i~~~~~V~~I~~~~~---~v~~~~G~~~~ad-~vI~t~P~~~l~~~l~~~~~~~~~~~l~y~~~~~v~l~~~~~~~ 310 (513)
T 4gde_A 235 EKTRFGEKGKVTKVNANNK---TVTLQDGTTIGYK-KLVSTMAVDFLAEAMNDQELVGLTKQLFYSSTHVIGVGVRGSRP 310 (513)
T ss_dssp GGEEESGGGCEEEEETTTT---EEEETTSCEEEEE-EEEECSCHHHHHHHTTCHHHHHHHTTCCEEEEEEEEEEEESSCC
T ss_pred cCeeeecceEEEEEEccCC---EEEEcCCCEEECC-EEEECCCHHHHHHhcCchhhHhhhhcccCCceEEEEEEEecccc
Confidence 899999999999998763 5778999999998 7999999999999998743 4567889999999999876642
Q ss_pred C--CCCCeEEecCCCCcceEEEEeecccCCCCCCCCceEE---------------------EEEec----CCCCCCCChH
Q 042352 336 P--VQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALI---------------------SVSLI----GLFADVMDDN 388 (445)
Q Consensus 336 ~--~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l---------------------~~~~~----~~~~~~~~~e 388 (445)
. .+.+++++++. .-.+.++..+++..|...|++...+ ..++. .....+++++
T Consensus 311 ~~~~~~~~~y~~~~-~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~ 389 (513)
T 4gde_A 311 ERIGDKCWLYFPED-NCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQET 389 (513)
T ss_dssp TTTTTCCEEECCST-TCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCTTT
T ss_pred ccccccceeeccCC-CCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEecccchhccCCCHHH
Confidence 1 23344444433 2234455555555555555443322 22211 1244678999
Q ss_pred HHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352 389 LTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC 445 (445)
Q Consensus 389 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~ 445 (445)
+++.++++|.++.+...........+.|+++++|.+.+|.... ++.-. -+|||+|
T Consensus 390 l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~--~~~l~~~ 448 (513)
T 4gde_A 390 ILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQ--DKDIWSR 448 (513)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHH--HTTEEEC
T ss_pred HHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHh--hcCcEEe
Confidence 9999999999998876555566667788889999998887421 33223 2578875
No 9
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=100.00 E-value=1.9e-34 Score=290.70 Aligned_cols=384 Identities=18% Similarity=0.147 Sum_probs=253.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC-CeeecccccchhccChhHHHhhcccCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD-GFLLDRGFQIFITAYPEAQKLLDYNALNLQKF 125 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 125 (445)
+++||+|||||++||+||+.|+++|++|+|+|+++++||++.+.+.+ |+.+|.|++++.+.++.+.++++++|++....
T Consensus 3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 82 (520)
T 1s3e_A 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKV 82 (520)
T ss_dssp CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEEC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCcceec
Confidence 45799999999999999999999999999999999999999999885 99999999998877788899999999876543
Q ss_pred cCC--cEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhc---c--hHHHhcCCCCcHHHHHHHcC
Q 042352 126 YSG--AKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIK---T--DEQILTSSEVPIIELLRNIG 198 (445)
Q Consensus 126 ~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~s~~~~l~~~~ 198 (445)
... ..++.+|+...++..++......... ...++...+.++..... . .......++.++.+|+++..
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (520)
T 1s3e_A 83 NEVERLIHHVKGKSYPFRGPFPPVWNPITYL------DHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLC 156 (520)
T ss_dssp CCSSEEEEEETTEEEEECSSSCCCCSHHHHH------HHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHC
T ss_pred ccCCceEEEECCEEEEecCCCCCCCCHHHHH------HHHHHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhC
Confidence 222 23345666555433222100000000 00011111111111000 0 00011235689999999875
Q ss_pred CCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHH-------h---hcCCCccccCccccHHHHHHhcCCCCcEEeCce
Q 042352 199 FSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKC-------L---ALGDNTIPANGICQIPNQIASKLPFESILLNTR 268 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~ 268 (445)
.+ +.++.++.+++...++.++.+.+...+...+.. + ..+..+++.||++.++++|++.+ |++|++|++
T Consensus 157 ~~-~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l-g~~i~~~~~ 234 (520)
T 1s3e_A 157 WT-ESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL-GDRVKLERP 234 (520)
T ss_dssp SS-HHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHH-GGGEESSCC
T ss_pred CC-HHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHHc-CCcEEcCCe
Confidence 54 456888888888888888777766544222211 1 12345789999999999999988 789999999
Q ss_pred eeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCC-
Q 042352 269 VLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEP- 340 (445)
Q Consensus 269 V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~- 340 (445)
|++|+.++++ +.|++.+|+++.|| +||+|+|+..+.+++.+|. .++...+.+..++++.|++++|+....
T Consensus 235 V~~i~~~~~~-v~v~~~~g~~~~ad-~VI~a~p~~~l~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~ 312 (520)
T 1s3e_A 235 VIYIDQTREN-VLVETLNHEMYEAK-YVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYC 312 (520)
T ss_dssp EEEEECSSSS-EEEEETTSCEEEES-EEEECSCGGGGGGSEEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGGGGGTEE
T ss_pred eEEEEECCCe-EEEEECCCeEEEeC-EEEECCCHHHHcceeeCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcccCCCCC
Confidence 9999988765 56889999889998 7999999999988875432 356677888999999999998643221
Q ss_pred eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecC----CCCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEee
Q 042352 341 VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG----LFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYR 416 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~----~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 416 (445)
...+......++. .++++. ..+.+..++..++.+ .+.+++++++++.++++|+++||........+...++
T Consensus 313 g~~~~~~~~~~~~-~~~d~~----~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~ 387 (520)
T 1s3e_A 313 GTMIIDGEEAPVA-YTLDDT----KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKN 387 (520)
T ss_dssp EEEEECSTTCSCS-EEEECC----CTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEE
T ss_pred ceeeccCCCCceE-EEeeCC----CCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCccccCCccEEEEEe
Confidence 1111111122222 233322 122234566655544 2567789999999999999999874221222233333
Q ss_pred c-------CCCCCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352 417 V-------RFAQPNQSPPTD-LIKNPKSEFSLAVYLC 445 (445)
Q Consensus 417 ~-------~~~~~~~~~g~~-~~~~~~~t~~~g~~~~ 445 (445)
+ |...+...||.. ..++...+|++|||+|
T Consensus 388 W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fA 424 (520)
T 1s3e_A 388 WCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFA 424 (520)
T ss_dssp GGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEEC
T ss_pred eCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEe
Confidence 3 222223455542 2355667889999997
No 10
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=296.22 Aligned_cols=380 Identities=17% Similarity=0.199 Sum_probs=267.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCCCCcceeeecc-CCeeecccccchhcc---ChhHHHhhcccCCcc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITA---YPEAQKLLDYNALNL 122 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~---~~~~~~l~~~lgl~~ 122 (445)
+||+|||||++||+||++|+++|+ +|+|||+++++||++++... +|+.+|.|++++... ++.+.++++++|++.
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 82 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDS 82 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGG
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcc
Confidence 699999999999999999999999 99999999999999999765 589999999987553 567889999999873
Q ss_pred eee--c------CCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHH
Q 042352 123 QKF--Y------SGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELL 194 (445)
Q Consensus 123 ~~~--~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 194 (445)
... . ....++.+|+...++............+..+. .... +. ..... ....++.++.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~---~~~~---~~---~~~~~---~~~~~~~s~~~~~ 150 (477)
T 3nks_A 83 EVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPL---FWAG---LR---ELTKP---RGKEPDETVHSFA 150 (477)
T ss_dssp GEEEECTTSHHHHCEEEEETTEEEECCCSSCC---CCTTSCSCS---SHHH---HT---TTTSC---CCCSSCCBHHHHH
T ss_pred eeeecCCCCchhcceEEEECCEEEECCCChhhcccccchhhhHH---HHHH---HH---hhhcC---CCCCCCcCHHHHH
Confidence 322 1 12456678888877654332221111111100 0000 00 11110 1123568999999
Q ss_pred HHcCCCHHHHHHhhhhhhcccccCCccchHHHHH-HHHHH-----------H-------------------hhcCCCccc
Q 042352 195 RNIGFSDSIIDSFFRPFFGGIFFDKELETSSRLF-DFIFK-----------C-------------------LALGDNTIP 243 (445)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~-------------------~~~g~~~~~ 243 (445)
++ .++.++.+.++.+++.++|..+..+.+.... ..+.. . ......+++
T Consensus 151 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (477)
T 3nks_A 151 QR-RLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSL 229 (477)
T ss_dssp HH-HHCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEE
T ss_pred HH-hhCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEE
Confidence 87 5788989999999999999988887765432 11111 0 012246789
Q ss_pred cCccccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC--Cc---ccC
Q 042352 244 ANGICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ--PV---KFQ 316 (445)
Q Consensus 244 ~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~--p~---~~~ 316 (445)
.||++.++++|++.++ |++|++|++|++|+.++++.+.|++ +|.++.|+ +||+|+|++.+.+|+++ |+ .+.
T Consensus 230 ~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad-~vv~a~p~~~~~~ll~~~~~~~~~~l~ 307 (477)
T 3nks_A 230 RGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEAD-HVISAIPASVLSELLPAEAAPLARALS 307 (477)
T ss_dssp TTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEES-EEEECSCHHHHHHHSCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcC-EEEECCCHHHHHHhccccCHHHHHHHh
Confidence 9999999999999885 8999999999999988765567776 45579998 79999999999999876 22 355
Q ss_pred CCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecccCCCCC-CCCceEEEEEecCCC--------CCCCCh
Q 042352 317 RKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYG-PLDKALISVSLIGLF--------ADVMDD 387 (445)
Q Consensus 317 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~-p~g~~~l~~~~~~~~--------~~~~~~ 387 (445)
.+.+.++.++++.|++++|+.....+.++......+..+++.|...|... |+|..++.+++.+.+ .+++++
T Consensus 308 ~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~ 387 (477)
T 3nks_A 308 AITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQE 387 (477)
T ss_dssp TCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHH
T ss_pred cCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHH
Confidence 67888999999999998865433333333332344667888888777654 447888887765432 245899
Q ss_pred HHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCC----CCCcccCCCCeeeC
Q 042352 388 NLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLI----KNPKSEFSLAVYLC 445 (445)
Q Consensus 388 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~t~~~g~~~~ 445 (445)
++++.++++|+++||..... ....++++.++.|.+.+|.... +....+..+|||+|
T Consensus 388 ~~~~~~~~~L~~~~g~~~~~--~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~ 447 (477)
T 3nks_A 388 LFQQRAQEAAATQLGLKEMP--SHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLA 447 (477)
T ss_dssp HHHHHHHHHHHHHHCCCSCC--SEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCC--cEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999864333 2345677778888888886532 11111124678887
No 11
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=100.00 E-value=2.1e-32 Score=274.29 Aligned_cols=374 Identities=14% Similarity=0.046 Sum_probs=243.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCC--cceee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNAL--NLQKF 125 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl--~~~~~ 125 (445)
.+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.+.+|+.+|.|++++.+.++.+.++++++|+ ++...
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~~~~~ 118 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPS 118 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCTTCEEES
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCcceeecc
Confidence 3899999999999999999999999999999999999999999999999999999998888899999999998 44443
Q ss_pred c---C-C-cEEEeC--CeeEeccCCccchHHHHHhhcCCccchHHHHHH----hhhhhhh-hhcc--hHHHhcCCCCcHH
Q 042352 126 Y---S-G-AKVYYN--GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLI----GLTRIRV-LIKT--DEQILTSSEVPII 191 (445)
Q Consensus 126 ~---~-~-~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~--~~~~~~~~~~s~~ 191 (445)
. . . ..++.+ +....++. ......... ...++.. ....+.. .... ...+..+++.|+.
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 189 (495)
T 2vvm_A 119 FNFSRGVNHFQLRTNPTTSTYMTH--EAEDELLRS-------ALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYS 189 (495)
T ss_dssp CCCSSSCCEEEEESSTTCCEEECH--HHHHHHHHH-------HHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTSBHH
T ss_pred cccCCCceEEEecCCCCceeecCH--HHHHHHHHH-------HHHHHHccchhhhhhcCCCCCCcccCcchhhhhhhhHH
Confidence 2 1 1 222333 34333321 000111000 0001100 0000000 0000 0011234578999
Q ss_pred HHHHHcC--CCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHH--------hhcCCCccccCccccHHHHHHhcCC--
Q 042352 192 ELLRNIG--FSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKC--------LALGDNTIPANGICQIPNQIASKLP-- 259 (445)
Q Consensus 192 ~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~gG~~~l~~~l~~~l~-- 259 (445)
+|+++.+ +++. .+.++.+++...++.+..+.+.......+.. ....+.+++.||++.++++|.+.++
T Consensus 190 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~ 268 (495)
T 2vvm_A 190 ERIDQIRDELSLN-ERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGT 268 (495)
T ss_dssp HHHHHHGGGCCHH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhccCCHH-HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHHHHHHHHHHHhhhc
Confidence 9999876 6655 5678888888888777776665433222111 1122466789999999999999874
Q ss_pred C-CcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeec
Q 042352 260 F-ESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSAD 331 (445)
Q Consensus 260 g-~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~ 331 (445)
| ++|++|++|++|+.++++ +.|++.+|++++|+ +||+|+|+..+.+++.+|. +++...+.+..++++.|+
T Consensus 269 g~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad-~vI~a~~~~~l~~i~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~ 346 (495)
T 2vvm_A 269 GRLGYVFGCPVRSVVNERDA-ARVTARDGREFVAK-RVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSMCTKVHAEVD 346 (495)
T ss_dssp TCEEEESSCCEEEEEECSSS-EEEEETTCCEEEEE-EEEECCCGGGGGGSEEESCCCHHHHHHHHHCCCCCCEEEEEEES
T ss_pred CceEEEeCCEEEEEEEcCCE-EEEEECCCCEEEcC-EEEECCCHHHHhheeeCCCCCHHHHHHHHhcCCCceeEEEEEEC
Confidence 5 889999999999987755 77888899889998 7999999999988864432 345567888999999999
Q ss_pred CCCCCCCCCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHHhHhCCCcCCCceE
Q 042352 332 KDEIPVQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRH 411 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~ 411 (445)
+++| . .+..+... ...+ ...+.+. ..|.|..++.++. +....+++++..+.++++|++++|+. .....
T Consensus 347 ~~~~--~-~~~g~~~~-~~~~-~~~~~~~----~~~~~~~vl~~~~-~~~~~~~~~e~~~~~~~~L~~~~~~~--~~~~~ 414 (495)
T 2vvm_A 347 NKDM--R-SWTGIAYP-FNKL-CYAIGDG----TTPAGNTHLVCFG-NSANHIQPDEDVRETLKAVGQLAPGT--FGVKR 414 (495)
T ss_dssp CGGG--G-GEEEEECS-SCSS-CEEEEEE----ECTTSCEEEEEEE-CSTTCCCTTTCHHHHHHHHHTTSTTS--CCEEE
T ss_pred CccC--C-CceeEecC-CCCc-EEEecCC----CCCCCCeEEEEEe-CccccCCCHHHHHHHHHHHHHhcCCC--CCceE
Confidence 8864 2 33222222 1222 2233222 2355666666543 43333667778899999999999862 22233
Q ss_pred eeEeecC------CCCCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352 412 LRTYRVR------FAQPNQSPPTD-LIKNPKSEFSLAVYLC 445 (445)
Q Consensus 412 ~~~~~~~------~~~~~~~~g~~-~~~~~~~t~~~g~~~~ 445 (445)
+..+++. .+++...||.. ..++...+|+++||+|
T Consensus 415 ~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fA 455 (495)
T 2vvm_A 415 LVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFA 455 (495)
T ss_dssp EEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEEC
T ss_pred EEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEe
Confidence 3333332 23344455653 1234445678899987
No 12
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=100.00 E-value=5.4e-33 Score=275.52 Aligned_cols=382 Identities=17% Similarity=0.155 Sum_probs=241.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceeec-
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKFY- 126 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~- 126 (445)
.+||+|||||++||+||++|+++|++|+|+|+++++||++.+...+|+.+|.|++++...++.+.++++++|+......
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~ 84 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYR 84 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCCEEECCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCccccccc
Confidence 5799999999999999999999999999999999999999998889999999999987777788899999998764432
Q ss_pred CCcEEEeC--CeeEeccCCcc-chHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHH
Q 042352 127 SGAKVYYN--GQFHTVADPFR-HFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSI 203 (445)
Q Consensus 127 ~~~~~~~~--g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 203 (445)
....++.. |....+....+ ........+.. .....+++...+...... . .......++.++.+|+++.+.+ +.
T Consensus 85 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~~~~l~~~~~~-~~ 160 (453)
T 2yg5_A 85 EGESVYISSAGERTRYTGDSFPTNETTKKEMDR-LIDEMDDLAAQIGAEEPW-A-HPLARDLDTVSFKQWLINQSDD-AE 160 (453)
T ss_dssp CSEEEEECTTSCEEEECSSSCSCCHHHHHHHHH-HHHHHHHHHHHHCSSCGG-G-STTHHHHHSSBHHHHHHHHCSC-HH
T ss_pred CCCEEEEeCCCceeeccCCCCCCChhhHHHHHH-HHHHHHHHHhhcCCCCCC-C-CcchhhhhhccHHHHHHhhcCC-HH
Confidence 22333332 44443322211 00000000000 000011111000000000 0 0011123468999999987554 45
Q ss_pred HHHhhhhhhcccccCCcc-chHHHHHHHHHHHh---------hcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEE
Q 042352 204 IDSFFRPFFGGIFFDKEL-ETSSRLFDFIFKCL---------ALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSID 273 (445)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~ 273 (445)
++.++.+++...++.++. +.+........... ..+..+++.||++.++++|++.+ |++|++|++|++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l-g~~i~~~~~V~~i~ 239 (453)
T 2yg5_A 161 ARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEAL-GDDVFLNAPVRTVK 239 (453)
T ss_dssp HHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHH-GGGEECSCCEEEEE
T ss_pred HHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhccCCCcceEEEcCChHHHHHHHHHhc-CCcEEcCCceEEEE
Confidence 677888888777877776 66654332222111 01236789999999999999988 78999999999999
Q ss_pred ecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCC---c----ccCCCCCcceEEEEEeecCCCCCCCC-CeEEec
Q 042352 274 FDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQP---V----KFQRKPARSTVCLYFSADKDEIPVQE-PVLFLN 345 (445)
Q Consensus 274 ~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p---~----~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~ 345 (445)
.++++.+.|++ +|++++|+ +||+|+|++.+.+|+.+| . ..+...+.+.+++++.|++++|+... ....+.
T Consensus 240 ~~~~~~v~v~~-~~~~~~ad-~VI~a~p~~~~~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~ 317 (453)
T 2yg5_A 240 WNESGATVLAD-GDIRVEAS-RVILAVPPNLYSRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFG 317 (453)
T ss_dssp EETTEEEEEET-TTEEEEEE-EEEECSCGGGGGGSEEESCCCHHHHHHGGGEEECCEEEEEEEESSCGGGGGTEEEEEEC
T ss_pred EeCCceEEEEE-CCeEEEcC-EEEEcCCHHHHhcCEeCCCCCHHHHHHHhcCCCcceEEEEEEECCCCCCCCCCCceeec
Confidence 87754255766 67789998 799999999998887543 2 34556677889999999998754321 111122
Q ss_pred CCCCcceEEEEeecccCCCCCCCC-ceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCcCCCceEeeEeecC--
Q 042352 346 GSGKGIVNNMFFATNVAPLYGPLD-KALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVR-- 418 (445)
Q Consensus 346 ~~~~~~~~~~~~~s~~~p~~~p~g-~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 418 (445)
. ...+ ..++++. .|++ ..++.+++.+. |.+++++++++.++++|+++||.... ........++.
T Consensus 318 ~--~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~-~p~~~~~~~W~~~ 388 (453)
T 2yg5_A 318 A--SEVV-QEVYDNT-----NHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAE-EPVVYYESDWGSE 388 (453)
T ss_dssp T--TSSS-CEEEECC-----CTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGG-CCSEEEECCTTTC
T ss_pred C--CCCe-EEEEeCC-----CCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCccCC-CccEEEEeecCCC
Confidence 1 1222 2333322 2334 45666555432 45578899999999999999986321 11112222221
Q ss_pred -CC----CCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352 419 -FA----QPNQSPPTD-LIKNPKSEFSLAVYLC 445 (445)
Q Consensus 419 -~~----~~~~~~g~~-~~~~~~~t~~~g~~~~ 445 (445)
+. .+...||.. ..++...+|++|||+|
T Consensus 389 ~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~a 421 (453)
T 2yg5_A 389 EWTRGCYAASFDLGGLHRYGADSRTPVGPIHFS 421 (453)
T ss_dssp TTTCSSSCEEECTTHHHHHGGGTTCCBTTEEEC
T ss_pred CCCCCCCcCcCCCCccccchHHHhCCcCceEEe
Confidence 11 112344421 2245567889999998
No 13
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=100.00 E-value=6.5e-32 Score=268.58 Aligned_cols=361 Identities=19% Similarity=0.207 Sum_probs=260.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCcceeee-ccCCeeecccccchhccChhHHHhhcccCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTD-SVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQK 124 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 124 (445)
..+||+|||||++||+||+.|+++| .+|+|+|+++++||++++. ..+|+.+|.|++++...++.+.++++++.-++..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 87 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWAVQGWNV 87 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHHCSCEEE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHHhhhhhh
Confidence 4589999999999999999999998 7999999999999999995 7889999999999987778888888876545555
Q ss_pred ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHH--HHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHH
Q 042352 125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKL--LIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDS 202 (445)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 202 (445)
......++.+|++..++- ...+.. + ....+. ...+.... ......++.++.+|+++. ++.+
T Consensus 88 ~~~~~~~~~~g~~~~~P~--~~~~~~---l-----~~~~~~~~~~~ll~~~------~~~~~~~~~s~~e~~~~~-~g~~ 150 (484)
T 4dsg_A 88 LQRESWVWVRGRWVPYPF--QNNIHR---L-----PEQDRKRCLDELVRSH------ARTYTEPPNNFEESFTRQ-FGEG 150 (484)
T ss_dssp EECCCEEEETTEEEESSG--GGCGGG---S-----CHHHHHHHHHHHHHHH------HCCCSSCCSSHHHHHHHH-HHHH
T ss_pred ccCceEEEECCEEEEeCc--cchhhh---C-----CHHHHHHHHHHHHHHH------hccCCCCCCCHHHHHHHH-hHHH
Confidence 666677888998877641 111100 0 111111 11111110 001224578999999875 7888
Q ss_pred HHHHhhhhhhcccccCCccchHHHH----------HHHHHHHhhc--C-------CCccc-cCccccHHHHHHhcCCCCc
Q 042352 203 IIDSFFRPFFGGIFFDKELETSSRL----------FDFIFKCLAL--G-------DNTIP-ANGICQIPNQIASKLPFES 262 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--g-------~~~~~-~gG~~~l~~~l~~~l~g~~ 262 (445)
+++.++.+++.+.|+.++.++++.. ...+...+.. + ...+| .||++.++++|++.++..+
T Consensus 151 ~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG~~~l~~~la~~l~~~~ 230 (484)
T 4dsg_A 151 IADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPSEK 230 (484)
T ss_dssp HCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSCTHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCCHHHHHHHHHhhhhhCe
Confidence 8889999999999998887765421 1112222111 1 11234 5899999999999985338
Q ss_pred EEeC--ceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC-----Cc----ccCCCCCcceEEEEEeec
Q 042352 263 ILLN--TRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ-----PV----KFQRKPARSTVCLYFSAD 331 (445)
Q Consensus 263 i~~n--~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~-----p~----~~~~~~~~~~~~v~~~~~ 331 (445)
|++| ++|++|..+++ +|++.+|+++.|+ +||+|+|++.+.+++.+ |+ .+..+.+.+..++++.++
T Consensus 231 i~~~~~~~V~~I~~~~~---~v~~~~G~~~~ad-~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~ 306 (484)
T 4dsg_A 231 LTFNSGFQAIAIDADAK---TITFSNGEVVSYD-YLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVK 306 (484)
T ss_dssp EEECGGGCEEEEETTTT---EEEETTSCEEECS-EEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEE
T ss_pred EEECCCceeEEEEecCC---EEEECCCCEEECC-EEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEc
Confidence 9999 56999998765 4667889889998 79999999999998854 22 355688999999999998
Q ss_pred CCCCC--CCCCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecC-CCCCCCChHHHHHHHHHHHhHhCCCcCCC
Q 042352 332 KDEIP--VQEPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIG-LFADVMDDNLTAEVIRELSDWFGKSTVGS 408 (445)
Q Consensus 332 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~-~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 408 (445)
++... .+.+.+++++. ...+..+++.++.+|..+|+|++++.+.+.. ...+.+++++++.++++|.++.+-.....
T Consensus 307 ~~~~~~~~~~~~i~vp~~-~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~~~~d~~l~~~a~~~L~~~~~~~~~~~ 385 (484)
T 4dsg_A 307 GTPPPHLKTACWLYFPED-TSPFYRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNHSTLIEDCIVGCLASNLLLPEDL 385 (484)
T ss_dssp SCCCGGGTTCCEEECCST-TCSCSEEECGGGTCGGGSCTTEEEEEEEEEEBTTBCCCTTSHHHHHHHHHHHTTSCCTTCC
T ss_pred CCCcccCCCCeEEEEEcC-CCeEEEEEeecCCCcccCCCCeEEEEEEEecCcCCcCCHHHHHHHHHHHHHHcCCCCccce
Confidence 87421 23455555544 3356678889999999999998887766543 34567899999999999999864322222
Q ss_pred ceEeeEeecCCCCCCCCCCCC
Q 042352 409 WRHLRTYRVRFAQPNQSPPTD 429 (445)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~g~~ 429 (445)
.....+.|+.+++|.+.+|..
T Consensus 386 ~~~~~v~r~~~~yP~y~~~~~ 406 (484)
T 4dsg_A 386 LVSKWHYRIEKGYPTPFIGRN 406 (484)
T ss_dssp EEEEEEEEEEEEEECCBTTHH
T ss_pred EEEEEEEEeCccccCCCccHH
Confidence 333446777888899888864
No 14
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.97 E-value=4.7e-30 Score=256.79 Aligned_cols=335 Identities=17% Similarity=0.170 Sum_probs=204.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc-----------------CCeeecccccchhcc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-----------------DGFLLDRGFQIFITA 107 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-----------------~g~~~d~G~~~~~~~ 107 (445)
+++.+||+|||||++||+||+.|+++|++|+|+|+++++||++.+... +|..++.|++++...
T Consensus 8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 87 (489)
T 2jae_A 8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQS 87 (489)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETT
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccH
Confidence 345689999999999999999999999999999999999999988764 577889999888765
Q ss_pred ChhHHHhhcccCCcceeecC---CcEEE-eC-----CeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcc
Q 042352 108 YPEAQKLLDYNALNLQKFYS---GAKVY-YN-----GQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKT 178 (445)
Q Consensus 108 ~~~~~~l~~~lgl~~~~~~~---~~~~~-~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (445)
+ .+.++++++|+....... ...++ .+ |....++. ....+. .....+.. .... ...
T Consensus 88 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~----~~~~~l~~---~~~~-~~~ 151 (489)
T 2jae_A 88 H-ITLDYCRELGVEIQGFGNQNANTFVNYQSDTSLSGQSVTYRA-------AKADTF----GYMSELLK---KATD-QGA 151 (489)
T ss_dssp S-THHHHHHHHTCCEEEECCCCTTSEEECCCSSTTTTCCEEHHH-------HHHHHH----HHHHHHHH---HHHH-HTT
T ss_pred H-HHHHHHHHcCCceEEccccCCCceEEecCCcccCCccccHHH-------Hhhhhh----ccHHHHHH---HHHh-ccc
Confidence 5 888999999998655432 23444 44 33322211 000000 00000000 0000 000
Q ss_pred hHH-HhcCCCCcHHHHHHHcCC-------CHHHHHHhhhh-hhcccccC--CccchHHHHHHHHHHH-------hhcCCC
Q 042352 179 DEQ-ILTSSEVPIIELLRNIGF-------SDSIIDSFFRP-FFGGIFFD--KELETSSRLFDFIFKC-------LALGDN 240 (445)
Q Consensus 179 ~~~-~~~~~~~s~~~~l~~~~~-------~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~g~~ 240 (445)
.+. +...++.++.+|+++.+- .......++.+ .....++. ...+........+... ...+.+
T Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (489)
T 2jae_A 152 LDQVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMM 231 (489)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGGGCTTTSSSE
T ss_pred cccccchhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhhhccccCccE
Confidence 000 000112377777775211 00001111110 00000000 0111111111101111 112356
Q ss_pred ccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCC---ceEEeccEEEEcCChhHHhhhcCC-Cc---
Q 042352 241 TIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANG---ETLKSEIGVILAVEEPEADKLLRQ-PV--- 313 (445)
Q Consensus 241 ~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g---~~i~a~~~VV~a~~~~~~~~ll~~-p~--- 313 (445)
+++.||++.|+++|++.++.++|++|++|++|+.++++ +.|++.+| ++++|+ +||+|+|+..+.+|..+ |+
T Consensus 232 ~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~~~~ad-~vI~a~p~~~l~~l~~~l~~~~~ 309 (489)
T 2jae_A 232 FTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEG-VTVEYTAGGSKKSITAD-YAICTIPPHLVGRLQNNLPGDVL 309 (489)
T ss_dssp EEETTCTTHHHHHHHHHHCGGGEETTCEEEEEEEETTE-EEEEEEETTEEEEEEES-EEEECSCHHHHTTSEECCCHHHH
T ss_pred EeecCCHHHHHHHHHHhcCCCeEEECCEEEEEEEcCCe-EEEEEecCCeEEEEECC-EEEECCCHHHHHhCccCCCHHHH
Confidence 78999999999999999832799999999999988765 66888776 578998 79999999999888764 43
Q ss_pred -ccCCCCCcceEEEEEeecCCCCCCCCCe---EEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCC
Q 042352 314 -KFQRKPARSTVCLYFSADKDEIPVQEPV---LFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVM 385 (445)
Q Consensus 314 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~ 385 (445)
.++.+.+.+.+++++.|++++|+..... +... ...+..+.++|...+ .|++ .++..+..+. +..++
T Consensus 310 ~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~---~~~~~~~~~~s~~~~--~~~~-~l~~~~~~g~~~~~~~~~~ 383 (489)
T 2jae_A 310 TALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNT---DKDISQIMFPYDHYN--SDRG-VVVAYYSSGKRQEAFESLT 383 (489)
T ss_dssp HHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEE---SSTTCEEECCSSSTT--SSCE-EEEEEEEETHHHHHHHTSC
T ss_pred HHHHhCCCccceEEEEEeCCCCccCCCCcccccccC---CCCceEEEeCCCCCC--CCCC-EEEEEeeCCchhhhhhcCC
Confidence 3556778899999999999875422121 1111 123445666765443 2322 4443444432 55678
Q ss_pred ChHHHHHHHHHHHhHhCC
Q 042352 386 DDNLTAEVIRELSDWFGK 403 (445)
Q Consensus 386 ~~e~~~~~~~~l~~~~~~ 403 (445)
++++++.++++|+++||.
T Consensus 384 ~~~~~~~~l~~L~~~~~~ 401 (489)
T 2jae_A 384 HRQRLAKAIAEGSEIHGE 401 (489)
T ss_dssp HHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 999999999999999987
No 15
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.96 E-value=2.8e-29 Score=251.79 Aligned_cols=341 Identities=16% Similarity=0.120 Sum_probs=214.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec--cCCeeecccccchhccChhHHHhhcccCCcce
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS--VDGFLLDRGFQIFITAYPEAQKLLDYNALNLQ 123 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 123 (445)
...+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|+.+|.|++++...++.+.++++++|+...
T Consensus 31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~ 110 (498)
T 2iid_A 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN 110 (498)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCce
Confidence 3468999999999999999999999999999999999999998876 57899999999987777889999999998765
Q ss_pred ee---cCCcEEEeCCeeEeccCCccchHHHHHhhcCC-----c-cchHHHHHHhhhhhhhhh--cch-HHHhcCCCCcHH
Q 042352 124 KF---YSGAKVYYNGQFHTVADPFRHFWDSIKSLANP-----I-GSVLDKLLIGLTRIRVLI--KTD-EQILTSSEVPII 191 (445)
Q Consensus 124 ~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~s~~ 191 (445)
.+ .....+..+|....... .......+... . ....+.+......+.... ... .....++..++.
T Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 186 (498)
T 2iid_A 111 EFSQENDNAWYFIKNIRKKVGE----VKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTK 186 (498)
T ss_dssp EECSCCTTSEEEETTEEEEHHH----HHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSBHH
T ss_pred eecccCCccEEEeCCeeecccc----cccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHHhhhhhHH
Confidence 43 22334455554332110 00000000000 0 000111111111100000 000 112234668999
Q ss_pred HHHHHcC-CCHHHHHHhhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceee
Q 042352 192 ELLRNIG-FSDSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVL 270 (445)
Q Consensus 192 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~ 270 (445)
+|+++.+ ++....+.+ ..++......... ........ .........+++.||++.|+++|++.++ .+|++|++|+
T Consensus 187 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~gG~~~l~~~l~~~l~-~~i~~~~~V~ 262 (498)
T 2iid_A 187 EYLIKEGDLSPGAVDMI-GDLLNEDSGYYVS-FIESLKHD-DIFAYEKRFDEIVDGMDKLPTAMYRDIQ-DKVHFNAQVI 262 (498)
T ss_dssp HHHHHTSCCCHHHHHHH-HHHTTCGGGTTSB-HHHHHHHH-HHHTTCCCEEEETTCTTHHHHHHHHHTG-GGEESSCEEE
T ss_pred HHHHHccCCCHHHHHHH-HHhcCcccchhHH-HHHHHHHH-hccccCcceEEeCCcHHHHHHHHHHhcc-cccccCCEEE
Confidence 9998865 455443322 2222111000000 00111110 1111223566889999999999999984 4999999999
Q ss_pred EEEecCCCcCeEEeCCCc----eEEeccEEEEcCChhHHhhhcCC---Cc----ccCCCCCcceEEEEEeecCCCCCCCC
Q 042352 271 SIDFDEQNMPNVRLANGE----TLKSEIGVILAVEEPEADKLLRQ---PV----KFQRKPARSTVCLYFSADKDEIPVQE 339 (445)
Q Consensus 271 ~I~~~~~~~~~V~~~~g~----~i~a~~~VV~a~~~~~~~~ll~~---p~----~~~~~~~~~~~~v~~~~~~~~~~~~~ 339 (445)
+|+.++++ +.|++.+|+ +++|+ +||+|+|+..+.++... |. +++.+.+.+..++++.|++++|+...
T Consensus 263 ~I~~~~~~-v~v~~~~~~~~~~~~~ad-~vI~t~p~~~~~~i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w~~~~ 340 (498)
T 2iid_A 263 KIQQNDQK-VTVVYETLSKETPSVTAD-YVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDG 340 (498)
T ss_dssp EEEECSSC-EEEEEECSSSCCCEEEES-EEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGGGT
T ss_pred EEEECCCe-EEEEEecCCcccceEEeC-EEEECCChHHHhheecCCCCCHHHHHHHHhCCCcceeEEEEEeCCCCccCCC
Confidence 99998765 678887775 47998 79999999988887543 32 34567888899999999999864321
Q ss_pred C--eEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCC
Q 042352 340 P--VLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFGK 403 (445)
Q Consensus 340 ~--~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~ 403 (445)
. ...+.+ .....+.+++.. .|+|..+|..+..+. +..++++++.+.++++|+++||.
T Consensus 341 ~~~~~~~~~---~~~~~~~~~s~~----~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~ 403 (498)
T 2iid_A 341 IHGGKSTTD---LPSRFIYYPNHN----FTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQL 403 (498)
T ss_dssp CCSSEEEES---STTCEEECCSSC----CTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTC
T ss_pred ccCCcccCC---CCcceEEECCCC----CCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHHHHHHcCC
Confidence 0 111111 122344555522 366677776655432 56788999999999999999983
No 16
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.96 E-value=1e-26 Score=228.87 Aligned_cols=366 Identities=15% Similarity=0.160 Sum_probs=227.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC---Ceeecccccchhcc-ChhHHHhhcccCCccee
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD---GFLLDRGFQIFITA-YPEAQKLLDYNALNLQK 124 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~---g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~ 124 (445)
+||+|||||++||+||+.|+++|++|+|||+++++||++.+.+.+ |..++.|++++... ++.+.++++++|++...
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTAA 81 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEEE
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeeee
Confidence 699999999999999999999999999999999999999998777 99999999998777 78888888889987655
Q ss_pred ecCCcEEEe---CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhc-chHHHhcCCCCcHHHHHHHcCCC
Q 042352 125 FYSGAKVYY---NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIK-TDEQILTSSEVPIIELLRNIGFS 200 (445)
Q Consensus 125 ~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~l~~~~~~ 200 (445)
........+ ++++............... ....++......+..... ........+ .++.+++++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~d-~s~~~~l~~~~~~ 153 (431)
T 3k7m_X 82 ASEFTSFRHRLGPTAVDQAFPIPGSEAVAVE-------AATYTLLRDAHRIDLEKGLENQDLEDLD-IPLNEYVDKLDLP 153 (431)
T ss_dssp CCCCCEECCBSCTTCCSSSSCCCGGGHHHHH-------HHHHHHHHHHTTCCTTTCTTSSSCGGGC-SBHHHHHHHHTCC
T ss_pred cCCCCcEEEEecCCeecCCCCCCHHHHHHHH-------HHHHHHHHHHHhcCCCCCccCcchhhhc-CCHHHHHHhcCCC
Confidence 433322222 2211111000000011000 001111111111100000 001112234 7899999887665
Q ss_pred HHHHHHhhhhhhcccccCCccchHHHHHHHHHHH--------hhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEE
Q 042352 201 DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFKC--------LALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSI 272 (445)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I 272 (445)
.. ...++.++....++.+..+.+.......... +..... .+.+|++.+++++++.+ | +|++|++|++|
T Consensus 154 ~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~~~~~~-g-~i~~~~~V~~i 229 (431)
T 3k7m_X 154 PV-SRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDE-VFSNGSADLVDAMSQEI-P-EIRLQTVVTGI 229 (431)
T ss_dssp HH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCE-EETTCTHHHHHHHHTTC-S-CEESSCCEEEE
T ss_pred HH-HHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecchhh-hcCCcHHHHHHHHHhhC-C-ceEeCCEEEEE
Confidence 54 4455666666666666655544332211111 111122 67999999999999887 6 99999999999
Q ss_pred EecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCCeEEec
Q 042352 273 DFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEPVLFLN 345 (445)
Q Consensus 273 ~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 345 (445)
+.++++ +.|++.+|++++|| +||+|+|+..+.++...|. ......+...+++++.|++++ . +++. .
T Consensus 230 ~~~~~~-v~v~~~~g~~~~ad-~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~--~--~i~~-~ 302 (431)
T 3k7m_X 230 DQSGDV-VNVTVKDGHAFQAH-SVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIHVRGAE--A--GIEC-V 302 (431)
T ss_dssp ECSSSS-EEEEETTSCCEEEE-EEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCC--T--TEEE-E
T ss_pred EEcCCe-EEEEECCCCEEEeC-EEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEEECCCC--c--CceE-c
Confidence 988766 67899999889998 7999999999888754432 234456677799999999885 1 3333 2
Q ss_pred CCCCcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHHhHhCCCc-----CCCceEeeEeecCCC
Q 042352 346 GSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELSDWFGKST-----VGSWRHLRTYRVRFA 420 (445)
Q Consensus 346 ~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~ 420 (445)
+.. . ....+++... ..+..++..+..+...+..++ +.+.+.|++++|+.. ..+|...+-.+..|+
T Consensus 303 ~d~--~-~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~W~~d~~~~G~~~ 372 (431)
T 3k7m_X 303 GDG--I-FPTLYDYCEV----SESERLLVAFTDSGSFDPTDI---GAVKDAVLYYLPEVEVLGIDYHDWIADPLFEGPWV 372 (431)
T ss_dssp BSS--S-SSEEEEEEEC----SSSEEEEEEEEETTTCCTTCH---HHHHHHHHHHCTTCEEEEEECCCTTTCTTTSSSSC
T ss_pred CCC--C-EEEEEeCcCC----CCCCeEEEEEeccccCCCCCH---HHHHHHHHHhcCCCCccEeEecccCCCCCCCCCCC
Confidence 221 1 1222332211 123455554444443222232 357788999998743 356664333343443
Q ss_pred CCCCCCCCC-CCCCCcccCCCCeeeC
Q 042352 421 QPNQSPPTD-LIKNPKSEFSLAVYLC 445 (445)
Q Consensus 421 ~~~~~~g~~-~~~~~~~t~~~g~~~~ 445 (445)
...||+. ..++.-..|..+||+|
T Consensus 373 --~~~~g~~~~~~~~l~~p~g~~~fA 396 (431)
T 3k7m_X 373 --APRVGQFSRVHKELGEPAGRIHFV 396 (431)
T ss_dssp --CCCTTTTTTSSGGGGSCBTTEEEC
T ss_pred --CcCCCCCcccHHHHhCCCCcEEEE
Confidence 3566763 4466667778889987
No 17
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.96 E-value=1e-27 Score=238.52 Aligned_cols=375 Identities=17% Similarity=0.163 Sum_probs=217.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcceeeeccCCeeecccccchhc----cChhHHHhhcc-cCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFIT----AYPEAQKLLDY-NAL 120 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~----~~~~~~~l~~~-lgl 120 (445)
..+||+|||||++||++|+.|++.|+ +|+|+|+++++||++.+...+|..+|.|++++.+ ....+.+++++ +++
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl 82 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKL 82 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCC
Confidence 45799999999999999999999999 8999999999999999999999999999999873 23467888998 888
Q ss_pred cceeecC-C--cEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHH--HH
Q 042352 121 NLQKFYS-G--AKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIE--LL 194 (445)
Q Consensus 121 ~~~~~~~-~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~l 194 (445)
....... . ..++. +|+.... ....... ............+...... ...++.++.+ ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~g~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~l 146 (472)
T 1b37_A 83 RNFRSDFDYLAQNVYKEDGGVYDE--------DYVQKRI----ELADSVEEMGEKLSATLHA----SGRDDMSILAMQRL 146 (472)
T ss_dssp CEEECCCTTGGGCEECSSSSBCCH--------HHHHHHH----HHHHHHHHHHHHHHHTSCT----TCTTCCBHHHHHHH
T ss_pred ceeeccCccccceeEcCCCCCCCH--------HHHHHHH----HHHHHHHHHHHHHHHhhcc----ccchhhhHHHHHHH
Confidence 6543211 1 11222 3433211 0000000 0001100000001000000 1223455543 55
Q ss_pred HHcCC--CHHHHHHhhhhhhc-ccccCCccchHHHHH--HHHHHHhhcCCC--ccccCccccHHHHHHhcCC--------
Q 042352 195 RNIGF--SDSIIDSFFRPFFG-GIFFDKELETSSRLF--DFIFKCLALGDN--TIPANGICQIPNQIASKLP-------- 259 (445)
Q Consensus 195 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~g~~--~~~~gG~~~l~~~l~~~l~-------- 259 (445)
.+... .....+.++.++.. ..+..+....+.... ...+... .+.. ..+.||++.++++|++.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~ 225 (472)
T 1b37_A 147 NEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDF-GDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGK 225 (472)
T ss_dssp HHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSCHHHHHH-CSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCC
T ss_pred hhhcccccccHHHHHHHHHHHhhhhcccccccchhhcccccccccc-CCceeeeecCCcHHHHHHHHHHhcccccccccc
Confidence 44321 11112223333321 112222222111000 0000111 1212 2347999999999998863
Q ss_pred --CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcC--CCc-------ccCCCCCcceEEEEE
Q 042352 260 --FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLR--QPV-------KFQRKPARSTVCLYF 328 (445)
Q Consensus 260 --g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~--~p~-------~~~~~~~~~~~~v~~ 328 (445)
|++|++|++|++|+.++++ +.|++.+|++++|+ +||+|+|++.+.+++. .|. .++...+.+..++++
T Consensus 226 i~~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad-~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l 303 (472)
T 1b37_A 226 IVDPRLQLNKVVREIKYSPGG-VTVKTEDNSVYSAD-YVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFL 303 (472)
T ss_dssp BCCTTEESSCCEEEEEECSSC-EEEEETTSCEEEES-EEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEE
T ss_pred ccccEEEcCCEEEEEEEcCCc-EEEEECCCCEEEcC-EEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEE
Confidence 5799999999999998766 66999999889998 7999999999887542 222 344566778899999
Q ss_pred eecCCCCCCC--CCeEEecCCCCcceEEEEeecccCCCCCCCCceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhC
Q 042352 329 SADKDEIPVQ--EPVLFLNGSGKGIVNNMFFATNVAPLYGPLDKALISVSLIGL----FADVMDDNLTAEVIRELSDWFG 402 (445)
Q Consensus 329 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~ 402 (445)
.|++++|+.. ..++.......+.. ..|.+ .++. .| +.+++.+++.+. +..++++++.+.++++|+++||
T Consensus 304 ~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~-~p-~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~P 378 (472)
T 1b37_A 304 KFPRKFWPEGKGREFFLYASSRRGYY--GVWQE-FEKQ-YP-DANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFP 378 (472)
T ss_dssp ECSSCCSCCSTTCSEEEECCSSTTSS--CEEEE-CTTT-ST-TCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHCT
T ss_pred ECCCcCCCCCCCcceEEecccCCccc--eeeec-ccCC-CC-CCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHcC
Confidence 9999987542 12222222211111 12221 1222 34 445665555432 5578899999999999999997
Q ss_pred CCcCCCceEeeEeec------CCCCCCCCCCCCC-CCCCcccCCCCeeeC
Q 042352 403 KSTVGSWRHLRTYRV------RFAQPNQSPPTDL-IKNPKSEFSLAVYLC 445 (445)
Q Consensus 403 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~-~~~~~~t~~~g~~~~ 445 (445)
+............++ ..++....||... .++...||+++||+|
T Consensus 379 g~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fA 428 (472)
T 1b37_A 379 GKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFT 428 (472)
T ss_dssp TSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEEC
T ss_pred CCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEe
Confidence 643221111112222 1122223456542 245567899999997
No 18
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.95 E-value=6e-28 Score=242.80 Aligned_cols=273 Identities=20% Similarity=0.188 Sum_probs=164.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCcceeeecc-CCeeecccccchhcc-ChhHHHhhcccCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITA-YPEAQKLLDYNALNLQ 123 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~ 123 (445)
..+||+|||||++||+||+.|+++| ++|+|||+++++||++.+... +|+.+|+|++++.+. ...+.+++.++++...
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~~~~ 86 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSLNDG 86 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHHHHC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCCCCc
Confidence 3479999999999999999999999 999999999999999999886 799999999998754 3345555555554211
Q ss_pred eecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHc------
Q 042352 124 KFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNI------ 197 (445)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------ 197 (445)
. ....+.++....+......... ........+...+..+.... .......++.++.+++++.
T Consensus 87 ~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~s~~~~l~~~l~~~~~ 154 (516)
T 1rsg_A 87 R---TRFVFDDDNFIYIDEERGRVDH-------DKELLLEIVDNEMSKFAELE--FHQHLGVSDCSFFQLVMKYLLQRRQ 154 (516)
T ss_dssp C---CCEECCCCCCEEEETTTEECTT-------CTTTCHHHHHHHHHHHHHHH--C-------CCBHHHHHHHHHHHHGG
T ss_pred c---eeEEECCCCEEEEcCCCccccc-------cHHHHHHHHHHHHHHHHHHH--hhhccCCCCCCHHHHHHHHHHHhhc
Confidence 0 0111111221111110000000 00000111111111111100 0001123457888776541
Q ss_pred CCCHHHHHHhhhhhhc---ccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEe
Q 042352 198 GFSDSIIDSFFRPFFG---GIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDF 274 (445)
Q Consensus 198 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~ 274 (445)
.+.+. ...++..++. ..++.+....+.... . ....+...++.| ++.|+++|++.+++++|++|++|++|..
T Consensus 155 ~l~~~-~~~~~~~~~~~~~~~~g~~~~~~s~~~~-~---~~~~~~~~~~~g-~~~l~~~l~~~l~~~~i~~~~~V~~I~~ 228 (516)
T 1rsg_A 155 FLTND-QIRYLPQLCRYLELWHGLDWKLLSAKDT-Y---FGHQGRNAFALN-YDSVVQRIAQSFPQNWLKLSCEVKSITR 228 (516)
T ss_dssp GSCHH-HHHHHHHHHGGGHHHHTBCTTTSBHHHH-C---CCCSSCCEEESC-HHHHHHHHHTTSCGGGEETTCCEEEEEE
T ss_pred ccCHH-HHHHHHHHHHHHHHHhCCChHHCChHHH-H---hhccCcchhhhC-HHHHHHHHHHhCCCCEEEECCEEEEEEE
Confidence 11111 1112222221 112233333332211 0 012234456677 9999999999987678999999999998
Q ss_pred cCCCcCeEEeCCCceEEeccEEEEcCChhHHhh-------------hcCC-Cc----ccCCCCCcceEEEEEeecCCCCC
Q 042352 275 DEQNMPNVRLANGETLKSEIGVILAVEEPEADK-------------LLRQ-PV----KFQRKPARSTVCLYFSADKDEIP 336 (445)
Q Consensus 275 ~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~-------------ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~ 336 (445)
++++.+.|++.+|++++|+ +||+|+|+..+.. +.++ |. +++.+.+.+..+|++.|+++||+
T Consensus 229 ~~~~~v~v~~~~g~~~~ad-~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~ 307 (516)
T 1rsg_A 229 EPSKNVTVNCEDGTVYNAD-YVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWS 307 (516)
T ss_dssp CTTSCEEEEETTSCEEEEE-EEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSC
T ss_pred cCCCeEEEEECCCcEEECC-EEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCC
Confidence 7545588999999889998 7999999998853 2333 32 46778889999999999999976
Q ss_pred CC
Q 042352 337 VQ 338 (445)
Q Consensus 337 ~~ 338 (445)
..
T Consensus 308 ~~ 309 (516)
T 1rsg_A 308 NE 309 (516)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 19
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=99.95 E-value=1.9e-26 Score=227.77 Aligned_cols=338 Identities=14% Similarity=0.161 Sum_probs=195.9
Q ss_pred cccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCC-ee---------------ecccccc
Q 042352 40 SLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDG-FL---------------LDRGFQI 103 (445)
Q Consensus 40 ~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g-~~---------------~d~G~~~ 103 (445)
+.+..++..+||||||||++||+||+.|+++|++|+|+|+++++||++++++.+| +. ++.|.++
T Consensus 3 ~~~~~~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~ 82 (453)
T 2bcg_G 3 MDQETIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDW 82 (453)
T ss_dssp ----CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGC
T ss_pred CchhhccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccce
Confidence 3345566779999999999999999999999999999999999999999987655 22 3344444
Q ss_pred hhc-------cChhHHHhhcccCCc----ceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHH--HHhhh
Q 042352 104 FIT-------AYPEAQKLLDYNALN----LQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKL--LIGLT 170 (445)
Q Consensus 104 ~~~-------~~~~~~~l~~~lgl~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 170 (445)
... ....+.++++++|+. +.... ..+.+.+|+...++... ...+........++. ...+.
T Consensus 83 ~~~l~P~~l~~~~~l~~ll~~lg~~~~l~~~~~~-~~~~~~~g~~~~~p~~~------~~~~~~~l~~~~~~~~~~~~~~ 155 (453)
T 2bcg_G 83 NVDLIPKFLMANGELTNILIHTDVTRYVDFKQVS-GSYVFKQGKIYKVPANE------IEAISSPLMGIFEKRRMKKFLE 155 (453)
T ss_dssp CEESSCCBEETTSHHHHHHHHHTGGGTCCEEECC-CEEEEETTEEEECCSSH------HHHHHCTTSCHHHHHHHHHHHH
T ss_pred eeccccceeecCcHHHHHHHhcCCccceEEEEcc-ceeEEeCCeEEECCCCh------HHHHhhhccchhhHHHHHHHHH
Confidence 322 234677888887763 22322 34455677766654331 111112222222211 11111
Q ss_pred hhhhhhcch-HHH--hcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcc----cccCCccchHH-HHHHHHH--HHhhcCCC
Q 042352 171 RIRVLIKTD-EQI--LTSSEVPIIELLRNIGFSDSIIDSFFRPFFGG----IFFDKELETSS-RLFDFIF--KCLALGDN 240 (445)
Q Consensus 171 ~~~~~~~~~-~~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~--~~~~~g~~ 240 (445)
......... ..+ ......++.+|+++.+.++... .++...+.. .+...+..... .+..+.. ..+..+.+
T Consensus 156 ~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~ 234 (453)
T 2bcg_G 156 WISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTK-EFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPY 234 (453)
T ss_dssp HHHHCBTTBGGGSTTCCTTTSBHHHHHHHTTCCHHHH-HHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSCSE
T ss_pred HHHHhccCCchhhhccccccCCHHHHHHHhCCCHHHH-HHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHhhcCCce
Confidence 111100000 000 1245789999999887776644 333221110 11212211111 1111111 12233445
Q ss_pred ccccCccccHHHHHHhcCC--CCcEEeCceeeEEEec--CCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccC
Q 042352 241 TIPANGICQIPNQIASKLP--FESILLNTRVLSIDFD--EQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQ 316 (445)
Q Consensus 241 ~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~--~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~ 316 (445)
.+|.||++.++++|++.+. |++|++|++|++|..+ ++++++|++ +|+++.|+ .||+|++++.- ++- ...
T Consensus 235 ~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad-~VV~a~~~~~~-~l~----~~~ 307 (453)
T 2bcg_G 235 LYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAP-LVIADPTYFPE-KCK----STG 307 (453)
T ss_dssp EEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECS-CEEECGGGCGG-GEE----EEE
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECC-EEEECCCccch-hhc----ccC
Confidence 5999999999999998774 9999999999999987 666567877 57789998 69999998731 221 000
Q ss_pred CCCCcceEEEEEeecCCCCC---C-CCCeEEecCCC--CcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHH
Q 042352 317 RKPARSTVCLYFSADKDEIP---V-QEPVLFLNGSG--KGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLT 390 (445)
Q Consensus 317 ~~~~~~~~~v~~~~~~~~~~---~-~~~~~~~~~~~--~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~ 390 (445)
. ...+.+++ ++++. + . .++.+.++... ......+..+|..+ +.+|+|++++.++...+.. + ..
T Consensus 308 ~-~~~~~~~i---~~~~~-~~~~~~~~~~ii~~~~~~~~~~~~~v~~~s~~d-~~aP~G~~~~~v~~~~~~~--~---~~ 376 (453)
T 2bcg_G 308 Q-RVIRAICI---LNHPV-PNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAH-NVCSKGHYLAIISTIIETD--K---PH 376 (453)
T ss_dssp E-EEEEEEEE---ESSCC-TTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGG-TSSCTTCEEEEEEEECCSS--C---HH
T ss_pred C-cceeEEEE---Ecccc-CCCCCCccEEEEeCccccCCCCCEEEEEeCCCC-CCCCCCcEEEEEEEecCCC--C---HH
Confidence 0 23333333 56654 3 1 23344444321 12345677788877 8899999999887654321 2 22
Q ss_pred HHHHHHHHhHhCC
Q 042352 391 AEVIRELSDWFGK 403 (445)
Q Consensus 391 ~~~~~~l~~~~~~ 403 (445)
+.+...++++.|.
T Consensus 377 ~~l~~~~~~l~~~ 389 (453)
T 2bcg_G 377 IELEPAFKLLGPI 389 (453)
T ss_dssp HHTHHHHGGGCSC
T ss_pred HHHHHHHHHhhhH
Confidence 3344555555543
No 20
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.94 E-value=1.1e-25 Score=221.01 Aligned_cols=331 Identities=18% Similarity=0.215 Sum_probs=202.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALNLQKF 125 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 125 (445)
+.+||+|||||++||+||++|+++| ++|+|+|+++++||++.+.+.+|+.+|.|++++...++.+.++++++|++....
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~~~~~ 84 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQEIMDRTGDKVDGP 84 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCTTCHHHHHHHHHHCCCCCSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecCCcHHHHHHHHHhCCccccc
Confidence 4579999999999999999999999 999999999999999999999999999999998777888999999999876542
Q ss_pred cCCcEEE-eCCeeEecc-CCccchHHHHHhhcCCccchHHHHHHhhhh-hhhhhc--chHHHhcCCCCcHHHHHHHcCCC
Q 042352 126 YSGAKVY-YNGQFHTVA-DPFRHFWDSIKSLANPIGSVLDKLLIGLTR-IRVLIK--TDEQILTSSEVPIIELLRNIGFS 200 (445)
Q Consensus 126 ~~~~~~~-~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~s~~~~l~~~~~~ 200 (445)
.....+. .+|...... ++... .... ...+++...+.. +..... ........+..++.+|+++.+.+
T Consensus 85 ~~~~~~~~~~g~~~~~~~~~~~~-~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 155 (424)
T 2b9w_A 85 KLRREFLHEDGEIYVPEKDPVRG-PQVM--------AAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNGCE 155 (424)
T ss_dssp CCCEEEECTTSCEECGGGCTTHH-HHHH--------HHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHHTTCG
T ss_pred cccceeEcCCCCEeccccCcccc-hhHH--------HHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHhhCcH
Confidence 2222222 234332110 11100 0000 001111110000 000000 00001112357999999988765
Q ss_pred HHHHHHhhhhhhcccccCCccchHHHHH-HHH----HHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEec
Q 042352 201 DSIIDSFFRPFFGGIFFDKELETSSRLF-DFI----FKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFD 275 (445)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~ 275 (445)
.+.+.+..+++...|+.+ .+.++... .+. ......++.+.+.+|++.++++|.+.+ +.+|++|++|++|..+
T Consensus 156 -~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l-~~~v~~~~~V~~i~~~ 232 (424)
T 2b9w_A 156 -AARDLWINPFTAFGYGHF-DNVPAAYVLKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNATL-EHPAERNVDITRITRE 232 (424)
T ss_dssp -GGHHHHTTTTCCCCCCCT-TTSBHHHHHHHSCHHHHHHHHHTCCBCCTTCHHHHHHHHHHHS-SSCCBCSCCEEEEECC
T ss_pred -HHHHHHHHHHHhhccCCh-HhcCHHHHHHhhhHhhhhcccCCceEEeCChHHHHHHHHHHhh-cceEEcCCEEEEEEEE
Confidence 456667777777666543 33433221 110 011223456688999999999999998 5789999999999988
Q ss_pred CCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC-Cc---ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcc
Q 042352 276 EQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ-PV---KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGI 351 (445)
Q Consensus 276 ~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~-p~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
+++ +.|++.+|+ ++|+ +||+|+|++.+.+++++ |+ ...+..+... .+.+.+...+ +. ...+++......
T Consensus 233 ~~~-v~v~~~~g~-~~ad-~Vv~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~ 305 (424)
T 2b9w_A 233 DGK-VHIHTTDWD-RESD-VLVLTVPLEKFLDYSDADDDEREYFSKIIHQQY-MVDACLVKEY-PT--ISGYVPDNMRPE 305 (424)
T ss_dssp TTC-EEEEESSCE-EEES-EEEECSCHHHHTTSBCCCHHHHHHHTTCEEEEE-EEEEEEESSC-CS--SEEECGGGGSGG
T ss_pred CCE-EEEEECCCe-EEcC-EEEECCCHHHHhhccCCCHHHHHHHhcCCccee-EEEEEEeccC-Cc--ccccccCCCCCc
Confidence 766 568888885 8998 79999999998888766 32 2334444432 2333333333 11 122333321110
Q ss_pred eE--EEEeecccCCCCCCCCceEEEEEecC---CCCCCCChHHHHHHHHHHHhH
Q 042352 352 VN--NMFFATNVAPLYGPLDKALISVSLIG---LFADVMDDNLTAEVIRELSDW 400 (445)
Q Consensus 352 ~~--~~~~~s~~~p~~~p~g~~~l~~~~~~---~~~~~~~~e~~~~~~~~l~~~ 400 (445)
.. .+..... .+. .| ..++..+..+ .+.+.+++++++.+++.|+++
T Consensus 306 ~~g~~~~~~~~-~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 355 (424)
T 2b9w_A 306 RLGHVMVYYHR-WAD-DP--HQIITTYLLRNHPDYADKTQEECRQMVLDDMETF 355 (424)
T ss_dssp GTTSCCEEEEC-CTT-CT--TSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHT
T ss_pred CCCcceEEeee-cCC-CC--ceEEEEEeccCCCcccccChHHHHHHHHHHHHHc
Confidence 10 1111111 111 11 2334444332 244567789999999999994
No 21
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1e-26 Score=225.80 Aligned_cols=304 Identities=13% Similarity=0.091 Sum_probs=207.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcceeeecc--CCeee-cccccchhccChhHHHhhcccCC
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGRVRTDSV--DGFLL-DRGFQIFITAYPEAQKLLDYNAL 120 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~l~~~lgl 120 (445)
|.+++||+|||||++||+||+.|+++ |++|+|+|+++++||++.+... +|+.+ +.|++++...++.+.++++++++
T Consensus 4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~g~ 83 (399)
T 1v0j_A 4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQFTD 83 (399)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTTCC
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHhhh
Confidence 44578999999999999999999999 9999999999999999999887 68877 59999998888999999999887
Q ss_pred cceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCC
Q 042352 121 NLQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFS 200 (445)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 200 (445)
+..+.....++++|+...++.... .+..+..... ..++....+.... ... ...+..++.+|+.+ .++
T Consensus 84 -~~~~~~~~~~~~~G~~~~~p~~~~----~~~~l~~~~~-~~~~~~~~l~~~~---~~~---~~~~~~s~~e~l~~-~~g 150 (399)
T 1v0j_A 84 -FTDYRHRVFAMHNGQAYQFPMGLG----LVSQFFGKYF-TPEQARQLIAEQA---AEI---DTADAQNLEEKAIS-LIG 150 (399)
T ss_dssp -BCCCCCCEEEEETTEEEEESSSHH----HHHHHHTSCC-CHHHHHHHHHHHG---GGS---CTTC----CCHHHH-HHC
T ss_pred -hhccccceEEEECCEEEeCCCCHH----HHHHHhcccC-CHHHHHHHHHHHh---hcc---CCCCcccHHHHHHH-HHh
Confidence 344455566778888877654321 1222222111 1222221111111 111 12346789999987 588
Q ss_pred HHHHHHhhhhhhcccccCCccchHHHHHHHHHH--HhhcC----CC-ccccCccccHHHHHHhcCCCCcEEeCceeeEEE
Q 042352 201 DSIIDSFFRPFFGGIFFDKELETSSRLFDFIFK--CLALG----DN-TIPANGICQIPNQIASKLPFESILLNTRVLSID 273 (445)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g----~~-~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~ 273 (445)
+.+++.++.+++.+.|+.++.++++.....+.. ....+ .+ .+|.||+++++++|++.+ |++|++|++|++|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~-g~~I~l~~~V~~I~ 229 (399)
T 1v0j_A 151 RPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADH-RIEVRLNTDWFDVR 229 (399)
T ss_dssp HHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHHHHHHHHHTCST-TEEEECSCCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccHHHHHHHHHhcC-CeEEEECCchhhhh
Confidence 999999999999999998888776543210000 00011 12 288999999999999977 78999999999996
Q ss_pred ecCCCcCeEEeCCCceE-EeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcce
Q 042352 274 FDEQNMPNVRLANGETL-KSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIV 352 (445)
Q Consensus 274 ~~~~~~~~V~~~~g~~i-~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (445)
.. | + ++ .+| +||+|+|++.+.++. +..+.+.+...+.+.++.+.+ .+..++.++.. ...+
T Consensus 230 ~~------v---~--~~~~aD-~VI~t~p~~~l~~~~-----l~~l~y~s~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~ 290 (399)
T 1v0j_A 230 GQ------L---R--PGSPAA-PVVYTGPLDRYFDYA-----EGRLGWRTLDFEVEVLPIGDF-QGTAVMNYNDL-DVPY 290 (399)
T ss_dssp HH------H---T--TTSTTC-CEEECSCHHHHTTTT-----TCCCCEEEEEEEEEEESSSCS-SSSSEEEECCT-TSSC
T ss_pred hh------h---h--hcccCC-EEEECCcHHHHHhhh-----hCCCCcceEEEEEEEEccccC-CCCeEEEeCCC-CCCc
Confidence 42 2 1 34 677 699999999887663 235678888888888876542 22334455443 2234
Q ss_pred EEEEeecccCCCCC-CCCceEEEEEecCCC
Q 042352 353 NNMFFATNVAPLYG-PLDKALISVSLIGLF 381 (445)
Q Consensus 353 ~~~~~~s~~~p~~~-p~g~~~l~~~~~~~~ 381 (445)
..+++.++..|... |+++.++...+...|
T Consensus 291 ~ri~~~~~~~~~~~~~~~~~~v~~e~~~~~ 320 (399)
T 1v0j_A 291 TRIHEFRHFHPERDYPTDKTVIMREYSRFA 320 (399)
T ss_dssp SEEEEGGGGCTTSCCCSSCEEEEEEEEEEC
T ss_pred ceeEeecCCCCCCcCCCCCeEEEEeecccc
Confidence 45677777667776 667777766554433
No 22
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.93 E-value=6.8e-25 Score=228.76 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=111.3
Q ss_pred CCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCC------CceEEeccEEEEcCChhHHhhhc--
Q 042352 238 GDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLAN------GETLKSEIGVILAVEEPEADKLL-- 309 (445)
Q Consensus 238 g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~------g~~i~a~~~VV~a~~~~~~~~ll-- 309 (445)
+.++.+.||++.|+++|++.+ +|++|++|++|..++++ +.|++.+ |++++|+ +||+|+|+.++.+++
T Consensus 562 g~~~~~~gG~~~L~~aLa~~l---~I~Lnt~V~~I~~~~~g-V~V~~~~~~~~~~g~~i~AD-~VIvTvPl~vLk~l~~~ 636 (852)
T 2xag_A 562 GSHLTVRNGYSCVPVALAEGL---DIKLNTAVRQVRYTASG-CEVIAVNTRSTSQTFIYKCD-AVLCTLPLGVLKQQPPA 636 (852)
T ss_dssp SCCEEETTCTTHHHHHHTTTC---CEECSEEEEEEEEETTE-EEEEEEESSSTTCEEEEEES-EEEECCCHHHHHCSSCS
T ss_pred CceEEecCcHHHHHHHHHhCC---CEEeCCeEEEEEEcCCc-EEEEEeecccCCCCeEEECC-EEEECCCHHHHHhhhcc
Confidence 456788999999999999865 79999999999998765 6677765 5679998 799999999998742
Q ss_pred ----CC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCC--CcceEEEEeecccCCCCCCCCceEEEEEec
Q 042352 310 ----RQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSG--KGIVNNMFFATNVAPLYGPLDKALISVSLI 378 (445)
Q Consensus 310 ----~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~ 378 (445)
++ |. +++.+.+.+..+|++.|+++||+.....+.+.... ......++|++. +..+|.+++.
T Consensus 637 I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~--------~~pvLl~~v~ 708 (852)
T 2xag_A 637 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY--------KAPILLALVA 708 (852)
T ss_dssp SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECS--------SSSEEEEEEC
T ss_pred cccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccCCCCceEEEecCC--------CCCEEEEEec
Confidence 22 32 34567788999999999999976433443322111 111123445442 1235555554
Q ss_pred CC----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352 379 GL----FADVMDDNLTAEVIRELSDWFGKST 405 (445)
Q Consensus 379 ~~----~~~~~~~e~~~~~~~~l~~~~~~~~ 405 (445)
+. +..++++++++.++++|+++||...
T Consensus 709 G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~ 739 (852)
T 2xag_A 709 GEAAGIMENISDDVIVGRCLAILKGIFGSSA 739 (852)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHHCTTT
T ss_pred CcCHHHHhcCCHHHHHHHHHHHHHHHhCccc
Confidence 43 5578999999999999999998743
No 23
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.93 E-value=2.5e-24 Score=205.07 Aligned_cols=195 Identities=10% Similarity=0.060 Sum_probs=138.0
Q ss_pred CccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC--C---c-
Q 042352 240 NTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ--P---V- 313 (445)
Q Consensus 240 ~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~--p---~- 313 (445)
.+...+|++.++++|++.+ |++|++|++|++|+.++++ +.|++.+|++++++ .||+|+|++.+.+|+.+ | +
T Consensus 104 ~~~~~~g~~~l~~~l~~~~-g~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~ad-~vV~A~p~~~~~~ll~~~~~~l~~~ 180 (342)
T 3qj4_A 104 NFVAPQGISSIIKHYLKES-GAEVYFRHRVTQINLRDDK-WEVSKQTGSPEQFD-LIVLTMPVPEILQLQGDITTLISEC 180 (342)
T ss_dssp EEECTTCTTHHHHHHHHHH-TCEEESSCCEEEEEECSSS-EEEEESSSCCEEES-EEEECSCHHHHTTCBSTHHHHSCHH
T ss_pred ceecCCCHHHHHHHHHHhc-CCEEEeCCEEEEEEEcCCE-EEEEECCCCEEEcC-EEEECCCHHHHHHHhcccccccCHH
Confidence 4566889999999999987 8999999999999998765 77889899878998 79999999999999976 2 1
Q ss_pred ---ccCCCCCcceEEEEEeecCCCC-CCCCCeEEecCCCCcceEEEEeecccCCCCC-CCCceEEEEEecC----CCCCC
Q 042352 314 ---KFQRKPARSTVCLYFSADKDEI-PVQEPVLFLNGSGKGIVNNMFFATNVAPLYG-PLDKALISVSLIG----LFADV 384 (445)
Q Consensus 314 ---~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~-p~g~~~l~~~~~~----~~~~~ 384 (445)
.+..+.+.++.++++.|+++++ +.+...+.++. ...+..+++.+.+ |.+. +++...+.++..+ .+.+.
T Consensus 181 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~k-~~r~~~~~~~~~v~~~~~~~~~~~~~~ 257 (342)
T 3qj4_A 181 QRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITS--NPCIRFVSIDNKK-RNIESSEIGPSLVIHTTVPFGVTYLEH 257 (342)
T ss_dssp HHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSS--CSSEEEEEEHHHH-TTCCCC-CCCEEEEEECHHHHHHTTTS
T ss_pred HHHHHhcCCccccEEEEEEECCCCccCCceeeEEccC--CcceEEEEccccC-CCCCCCCCCceEEEECCHHHHHHhhcC
Confidence 4567889999999999998742 22222222332 1223334455554 4432 3333344444433 25678
Q ss_pred CChHHHHHHHHHHHhHhCCCcCCCceEeeEeecCCCCCCCCCCCCCCCCCcc--cCCCCeeeC
Q 042352 385 MDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKS--EFSLAVYLC 445 (445)
Q Consensus 385 ~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--t~~~g~~~~ 445 (445)
+++++.+.++++|++++|....+.| ....|+.++.|.+..+ .+|... ...|||+||
T Consensus 258 ~~~~~~~~~~~~l~~~~g~~~~p~~--~~v~rW~~a~p~~~~~---~~~~~~~~~~~~~l~la 315 (342)
T 3qj4_A 258 SIEDVQELVFQQLENILPGLPQPIA--TKCQKWRHSQVTNAAA---NCPGQMTLHHKPFLACG 315 (342)
T ss_dssp CHHHHHHHHHHHHHHHSCSCCCCSE--EEEEEETTCSBSSCCS---SSCSCEEEETTTEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCCCce--eeeccccccccccccC---CCcceeEecCCccEEEE
Confidence 8999999999999999996544444 4567777888765431 234433 368999998
No 24
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=99.93 E-value=8.9e-25 Score=214.38 Aligned_cols=330 Identities=14% Similarity=0.162 Sum_probs=198.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-c--------------------CCeeecccccc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-V--------------------DGFLLDRGFQI 103 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~--------------------~g~~~d~G~~~ 103 (445)
|+..+||+|||||++||++|+.|+++|++|+|+|+++.+||++++++ . .++.+|+|+++
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~ 82 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF 82 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence 45678999999999999999999999999999999999999999987 1 34677888887
Q ss_pred hhccChhHHHhhcccCCc----ceeecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHH--HHhhhhhhhhhc
Q 042352 104 FITAYPEAQKLLDYNALN----LQKFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKL--LIGLTRIRVLIK 177 (445)
Q Consensus 104 ~~~~~~~~~~l~~~lgl~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 177 (445)
+... ..+.++++++|+. +.... ..+++.+|+...++.... ..+........++. ...+..+.....
T Consensus 83 l~~~-~~l~~ll~~lgl~~~l~~~~~~-~~~~~~~g~~~~~p~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 154 (433)
T 1d5t_A 83 LMAN-GQLVKMLLYTEVTRYLDFKVVE-GSFVYKGGKIYKVPSTET------EALASNLMGMFEKRRFRKFLVFVANFDE 154 (433)
T ss_dssp EETT-SHHHHHHHHHTGGGGCCEEECC-EEEEEETTEEEECCCSHH------HHHHCSSSCHHHHHHHHHHHHHHHHCCT
T ss_pred eecc-chHHHHHHHcCCccceEEEEeC-ceEEeeCCEEEECCCCHH------HHhhCcccChhhHHHHHHHHHHHHhhcc
Confidence 6543 4567788887764 22222 233455776665543310 11111222222211 111111111000
Q ss_pred c---hHHHhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhccccc-CCccchHH--HHHHHHHHHh-----hcCCCccccCc
Q 042352 178 T---DEQILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFF-DKELETSS--RLFDFIFKCL-----ALGDNTIPANG 246 (445)
Q Consensus 178 ~---~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~-----~~g~~~~~~gG 246 (445)
. ..........++.+|+++.+.++.. +.++...+ .++. ..+.+.++ .++.+..... ..+..++|.||
T Consensus 155 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~l-~~~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~g~~~~~~p~gG 232 (433)
T 1d5t_A 155 NDPKTFEGVDPQNTSMRDVYRKFDLGQDV-IDFTGHAL-ALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYG 232 (433)
T ss_dssp TCGGGGTTCCTTTSBHHHHHHHTTCCHHH-HHHHHHHT-SCCSSSGGGGSBSHHHHHHHHHHHHSCCSSSCCSEEEETTC
T ss_pred cCchhccccccccCCHHHHHHHcCCCHHH-HHHHHHHH-HhccCCCccCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCcC
Confidence 0 0011134678999999988776664 44433221 1222 12211111 1222222211 12236689999
Q ss_pred cccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceE
Q 042352 247 ICQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTV 324 (445)
Q Consensus 247 ~~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~ 324 (445)
++.++++|++.+. |++|++|++|++|..+++++++|++ +|++++|+ +||+|++++.. .+.. .. ...+.+
T Consensus 233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~~~~ad-~VV~a~~~~~~--~~~~---~~--~~~~~~ 303 (433)
T 1d5t_A 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-EGEVARCK-QLICDPSYVPD--RVRK---AG--QVIRII 303 (433)
T ss_dssp TTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-TTEEEECS-EEEECGGGCGG--GEEE---EE--EEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-CCeEEECC-EEEECCCCCcc--cccc---cC--cceeEE
Confidence 9999999998775 9999999999999988776566664 78789998 79999999842 1211 11 122223
Q ss_pred EEEEeecCCCCCC----CCCeEEecCCC--CcceEEEEeecccCCCCCCCCceEEEEEecCCCCCCCChHHHHHHHHHHH
Q 042352 325 CLYFSADKDEIPV----QEPVLFLNGSG--KGIVNNMFFATNVAPLYGPLDKALISVSLIGLFADVMDDNLTAEVIRELS 398 (445)
Q Consensus 325 ~v~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~~~~~~~~~~e~~~~~~~~l~ 398 (445)
.+ ++++. ++ .++.++++... ......+..+| .+|+.+|+|++++.++...+.. +..+.+...++
T Consensus 304 ~i---l~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s-~d~~~aP~G~~~~~~~~~~p~~-----~~~~~l~~~~~ 373 (433)
T 1d5t_A 304 CI---LSHPI-KNTNDANSCQIIIPQNQVNRKSDIYVCMIS-YAHNVAAQGKYIAIASTTVETT-----DPEKEVEPALG 373 (433)
T ss_dssp EE---ESSCC-TTSTTCSSEEEEECGGGTTCSSCEEEEEEE-GGGTSSCTTCEEEEEEEECCSS-----CHHHHTHHHHT
T ss_pred EE---EcCcc-cccCCCceEEEEeCccccCCCCCEEEEEEC-CCCcccCCCCEEEEEEEecCCC-----CHHHHHHHHHH
Confidence 22 56653 32 34555655421 22455677788 8999999999999877654322 12234555555
Q ss_pred hHhCC
Q 042352 399 DWFGK 403 (445)
Q Consensus 399 ~~~~~ 403 (445)
++.|.
T Consensus 374 ~l~~~ 378 (433)
T 1d5t_A 374 LLEPI 378 (433)
T ss_dssp TTCSC
T ss_pred HhhhH
Confidence 55443
No 25
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.93 E-value=2.5e-24 Score=221.84 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=112.2
Q ss_pred CCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCC------CceEEeccEEEEcCChhHHhhh---
Q 042352 238 GDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLAN------GETLKSEIGVILAVEEPEADKL--- 308 (445)
Q Consensus 238 g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~------g~~i~a~~~VV~a~~~~~~~~l--- 308 (445)
+.++.+.||++.|+++|++. .+|++|++|++|..++++ +.|++.+ |++++|+ +||+|+|+.+++++
T Consensus 391 g~~~~~~gG~~~l~~~La~~---l~I~l~~~V~~I~~~~~~-v~V~~~~~~~~~~~~~~~Ad-~VI~tvP~~vL~~l~~~ 465 (662)
T 2z3y_A 391 GSHLTVRNGYSCVPVALAEG---LDIKLNTAVRQVRYTASG-CEVIAVNTRSTSQTFIYKCD-AVLCTLPLGVLKQQPPA 465 (662)
T ss_dssp SCCEEETTCTTHHHHHHTTT---CEEETTEEEEEEEEETTE-EEEEEEESSCTTCEEEEEES-EEEECCCHHHHHCSSCS
T ss_pred CceeeecCcHHHHHHHHHhc---CceecCCeEEEEEECCCc-EEEEEeecccCCCCeEEEeC-EEEECCCHHHHhcccCc
Confidence 45678899999999999985 489999999999998765 6777766 5679998 79999999999873
Q ss_pred ---cCC-Cc----ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCC--CCcceEEEEeecccCCCCCCCCceEEEEEec
Q 042352 309 ---LRQ-PV----KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGS--GKGIVNNMFFATNVAPLYGPLDKALISVSLI 378 (445)
Q Consensus 309 ---l~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~ 378 (445)
.++ |. +++.+.+.+..+|++.|+++||+.....+..... .......+++++. +..+|..++.
T Consensus 466 i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~--------~~~vL~~~~~ 537 (662)
T 2z3y_A 466 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY--------KAPILLALVA 537 (662)
T ss_dssp SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCS--------SSSEEEEEEC
T ss_pred eEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCCCCCceeEEEeCC--------CCCEEEEEec
Confidence 233 32 3556778899999999999997644344332211 1111233444432 2235555554
Q ss_pred CC----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352 379 GL----FADVMDDNLTAEVIRELSDWFGKST 405 (445)
Q Consensus 379 ~~----~~~~~~~e~~~~~~~~l~~~~~~~~ 405 (445)
+. +..++++++++.++++|+++||...
T Consensus 538 G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~ 568 (662)
T 2z3y_A 538 GEAAGIMENISDDVIVGRCLAILKGIFGSSA 568 (662)
T ss_dssp THHHHHHTTSCHHHHHHHHHHHHHHHHCTTS
T ss_pred cHhHHHHHhCCHHHHHHHHHHHHHHHhCCcc
Confidence 43 4578999999999999999998743
No 26
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=99.93 E-value=5.2e-25 Score=211.06 Aligned_cols=292 Identities=13% Similarity=0.120 Sum_probs=207.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeec-cCCee-ecccccchhccChhHHHhhcccCCcce
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDS-VDGFL-LDRGFQIFITAYPEAQKLLDYNALNLQ 123 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~-~d~G~~~~~~~~~~~~~l~~~lgl~~~ 123 (445)
...+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|.. ++.|+|++...++.+.+++++++. +.
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~ 105 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTE-WR 105 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTSCC-EE
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHhhh-cc
Confidence 3568999999999999999999999999999999999999999876 67876 599999998888899999999884 33
Q ss_pred eecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHH
Q 042352 124 KFYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSI 203 (445)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 203 (445)
.......++.+|++..++.... .+..+....... +....+.. . ......++.++++|+.+ .+++++
T Consensus 106 ~~~~~~~~~~~g~l~~lP~~~~----~~~~l~~~~~~~--~~~~~~l~--~-----~~~~~~~~~s~~e~~~~-~~G~~~ 171 (397)
T 3hdq_A 106 PYQHRVLASVDGQLLPIPINLD----TVNRLYGLNLTS--FQVEEFFA--S-----VAEKVEQVRTSEDVVVS-KVGRDL 171 (397)
T ss_dssp ECCCBEEEEETTEEEEESCCHH----HHHHHHTCCCCH--HHHHHHHH--H-----HCCCCSSCCBHHHHHHH-HHHHHH
T ss_pred cccccceEEECCEEEEcCCChH----HHHHhhccCCCH--HHHHHHHh--h-----cccCCCCCcCHHHHHHH-hcCHHH
Confidence 4444556778999888754422 122222211111 11111111 0 11123457899999986 488999
Q ss_pred HHHhhhhhhcccccCCccchHHHHHHHHHHHhhcC-----CC--ccccCccccHHHHHHhcCCCCcEEeCceeeEEEecC
Q 042352 204 IDSFFRPFFGGIFFDKELETSSRLFDFIFKCLALG-----DN--TIPANGICQIPNQIASKLPFESILLNTRVLSIDFDE 276 (445)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~--~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~ 276 (445)
++.++++++.+.|+.++.++++.+...+....... +. .+|.||+++++++|++.. |++|++|++|++|
T Consensus 172 ~e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~~~~-g~~V~l~~~v~~~---- 246 (397)
T 3hdq_A 172 YNKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNMLSSP-NIKVMLNTDYREI---- 246 (397)
T ss_dssp HHHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHTCST-TEEEEESCCGGGT----
T ss_pred HHHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCHHHHHHHHHhcc-CCEEEECCeEEec----
Confidence 99999999999999999998876442111000111 11 369999999999999876 8999999999833
Q ss_pred CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEE
Q 042352 277 QNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMF 356 (445)
Q Consensus 277 ~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (445)
+.++.++ +||+|+|++.+... ...++.+.+...+++.++.+.+ .+..++.+++. . ++.+++
T Consensus 247 ----------~~~~~~d-~vI~T~P~d~~~~~-----~~g~L~yrsl~~~~~~~~~~~~-~~~~~vn~~d~-~-p~tRi~ 307 (397)
T 3hdq_A 247 ----------ADFIPFQ-HMIYTGPVDAFFDF-----CYGKLPYRSLEFRHETHDTEQL-LPTGTVNYPND-Y-AYTRVS 307 (397)
T ss_dssp ----------TTTSCEE-EEEECSCHHHHTTT-----TTCCCCEEEEEEEEEEESSSCS-CSSSEEECSSS-S-SCSEEE
T ss_pred ----------cccccCC-EEEEcCCHHHHHHH-----hcCCCCCceEEEEEEEeccccC-CCCeEEEeCCC-C-cceEEE
Confidence 3345687 79999999876432 2335789999999999986653 34556665544 3 777888
Q ss_pred eecccCCCCCCCCceEEEEEec
Q 042352 357 FATNVAPLYGPLDKALISVSLI 378 (445)
Q Consensus 357 ~~s~~~p~~~p~g~~~l~~~~~ 378 (445)
..++. +.. +.++.++..-+.
T Consensus 308 e~k~~-~~~-~~~~t~i~~Ey~ 327 (397)
T 3hdq_A 308 EFKHI-TGQ-RHHQTSVVYEYP 327 (397)
T ss_dssp EHHHH-HCC-CCSSEEEEEEEE
T ss_pred eeccc-CCC-CCCCEEEEEEEC
Confidence 87765 332 446677665543
No 27
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.92 E-value=2.1e-24 Score=208.18 Aligned_cols=293 Identities=13% Similarity=0.115 Sum_probs=202.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc--CCeee-cccccchhccChhHHHhhcccCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV--DGFLL-DRGFQIFITAYPEAQKLLDYNALNLQK 124 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~l~~~lgl~~~~ 124 (445)
.+||+|||||++||++|+.|+++|++|+|+|+++++||++.+... +|+.+ +.|++++...++.+.+++++++. +.+
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~-~~~ 81 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAE-MMP 81 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTSC-EEE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHHhh-hcc
Confidence 479999999999999999999999999999999999999999877 78775 99999998888999999999885 334
Q ss_pred ecCCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHH
Q 042352 125 FYSGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSII 204 (445)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~ 204 (445)
......++.+|+...++.... .+..++..... .++....+.. ..... ..++.++.+|+.+. +++.+.
T Consensus 82 ~~~~~~~~~~g~~~~~P~~~~----~~~~l~~~~~~-~~~~~~~l~~---~~~~~----~~~~~sl~e~~~~~-~g~~~~ 148 (384)
T 2bi7_A 82 YVNRVKATVNGQVFSLPINLH----TINQFFSKTCS-PDEARALIAE---KGDST----IADPQTFEEEALRF-IGKELY 148 (384)
T ss_dssp CCCCEEEEETTEEEEESCCHH----HHHHHTTCCCC-HHHHHHHHHH---HSCCS----CSSCCBHHHHHHHH-HCHHHH
T ss_pred cccceEEEECCEEEECCCChh----HHHHHhcccCC-HHHHHHHHHH---hhhcc----CCCCcCHHHHHHHh-hcHHHH
Confidence 444456677887776654322 22222222111 1222111111 11111 23578999999875 789999
Q ss_pred HHhhhhhhcccccCCccchHHHHHHHHH--HHhh----cCCCc-cccCccccHHHHHHhcCCCCcEEeCceee-EEEecC
Q 042352 205 DSFFRPFFGGIFFDKELETSSRLFDFIF--KCLA----LGDNT-IPANGICQIPNQIASKLPFESILLNTRVL-SIDFDE 276 (445)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~g~~~-~~~gG~~~l~~~l~~~l~g~~i~~n~~V~-~I~~~~ 276 (445)
+.++.|++.+.|+.++.++++.....+. ..+. .+.+. +|+||+++++++|++.. |++|++|++|+ +|..
T Consensus 149 ~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~-g~~I~l~~~V~~~i~~-- 225 (384)
T 2bi7_A 149 EAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHE-NIKVDLQREFIVEERT-- 225 (384)
T ss_dssp HHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCST-TEEEEESCCCCGGGGG--
T ss_pred HHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCHHHHHHHHHhcC-CCEEEECCeeehhhhc--
Confidence 9999999999999998887765421000 0000 12222 89999999999999865 78999999999 7752
Q ss_pred CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEE
Q 042352 277 QNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMF 356 (445)
Q Consensus 277 ~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (445)
.+| +||+|+|++.+.+++-. .+.+.+...+++.+|... .+..++.+++. ...+..++
T Consensus 226 --------------~~d-~VI~a~p~~~~~~~~lg-----~l~y~s~~~v~~~~d~~~--~~~~~~n~~~~-~~~~~ri~ 282 (384)
T 2bi7_A 226 --------------HYD-HVFYSGPLDAFYGYQYG-----RLGYRTLDFKKFTYQGDY--QGCAVMNYCSV-DVPYTRIT 282 (384)
T ss_dssp --------------GSS-EEEECSCHHHHTTTTTC-----CCCEEEEEEEEEEEESCS--SSSSEEEECST-TSSSSEEE
T ss_pred --------------cCC-EEEEcCCHHHHHHhhcC-----CCCcceEEEEEEEeCCCC--CCCEEEEecCC-CCCeeeEE
Confidence 166 79999999998775422 467888888888887332 23334344432 22344566
Q ss_pred eecccCCCCCCCCceEEEEEecCCC
Q 042352 357 FATNVAPLYGPLDKALISVSLIGLF 381 (445)
Q Consensus 357 ~~s~~~p~~~p~g~~~l~~~~~~~~ 381 (445)
+.++..|...+ ++.++...+...|
T Consensus 283 ~~~~~~~~~~~-~~~~v~~e~~~~~ 306 (384)
T 2bi7_A 283 EHKYFSPWEQH-DGSVCYKEYSRAC 306 (384)
T ss_dssp EGGGGCTTSCC-SEEEEEEEEEEEC
T ss_pred EeeccCCCCCC-CCEEEEEEEeccc
Confidence 66666666653 5566665554433
No 28
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.91 E-value=1.5e-24 Score=208.06 Aligned_cols=292 Identities=11% Similarity=0.113 Sum_probs=200.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeec-ccccchhccChhHHHhhcccCCcceeecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLD-RGFQIFITAYPEAQKLLDYNALNLQKFYS 127 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d-~G~~~~~~~~~~~~~l~~~lgl~~~~~~~ 127 (445)
+||+|||||++||+||+.|+++|++|+|+|+++++||++.+...+|..++ .|++++...++.+.+++++++. +.+...
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~-~~~~~~ 80 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLVE-FNRFTN 80 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHTTSC-BCCCCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecCCCHHHHHHHHHhhh-hhhccc
Confidence 69999999999999999999999999999999999999999888899885 9999998878888889888775 333444
Q ss_pred CcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHHh
Q 042352 128 GAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDSF 207 (445)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ 207 (445)
....+.+|+...++... ..+..++... ..++....+. ..... ....++.++.+|+.+. +++++.+.+
T Consensus 81 ~~~~~~~g~~~~~p~~~----~~~~~l~~~~--~~~~~~~~l~---~~~~~---~~~~~~~s~~~~~~~~-~g~~~~~~~ 147 (367)
T 1i8t_A 81 SPLAIYKDKLFNLPFNM----NTFHQMWGVK--DPQEAQNIIN---AQKKK---YGDKVPENLEEQAISL-VGEDLYQAL 147 (367)
T ss_dssp CCEEEETTEEEESSBSH----HHHHHHHCCC--CHHHHHHHHH---HHTTT---TCCCCCCSHHHHHHHH-HHHHHHHHH
T ss_pred cceEEECCeEEEcCCCH----HHHHHHhccC--CHHHHHHHHH---HHhhc---cCCCCCccHHHHHHHH-HhHHHHHHH
Confidence 45667788877664332 2222222211 1111111111 11111 1123578999999886 889999999
Q ss_pred hhhhhcccccCCccchHHHHHHHHHHHh--h----cCCCc-cccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcC
Q 042352 208 FRPFFGGIFFDKELETSSRLFDFIFKCL--A----LGDNT-IPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMP 280 (445)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~g~~~-~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~ 280 (445)
+.|++.+.|+.++.++++.....+...+ . .+.+. +|+||+++++++|++ |++|++|++|++|...
T Consensus 148 ~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~---g~~i~l~~~V~~i~~~----- 219 (367)
T 1i8t_A 148 IKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLE---GVDVKLGIDFLKDKDS----- 219 (367)
T ss_dssp THHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHT---TSEEECSCCGGGSHHH-----
T ss_pred HHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHHHHHhc---CCEEEeCCceeeechh-----
Confidence 9999999999999888764321010000 0 11222 899999999999998 5799999999988621
Q ss_pred eEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeecc
Q 042352 281 NVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATN 360 (445)
Q Consensus 281 ~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 360 (445)
| ++.+| +||+|+|++.+.++. +..+.+.+...+++.++++.++ +..++.+.+. ...+..+++.++
T Consensus 220 -v------~~~~D-~VV~a~p~~~~~~~~-----l~~l~y~s~~~v~~~~d~~~~~-~~~~~~~~~~-~~~~~ri~~~~~ 284 (367)
T 1i8t_A 220 -L------ASKAH-RIIYTGPIDQYFDYR-----FGALEYRSLKFETERHEFPNFQ-GNAVINFTDA-NVPYTRIIEHKH 284 (367)
T ss_dssp -H------HTTEE-EEEECSCHHHHTTTT-----TCCCCEEEEEEEEEEESSSCSS-SSSEEEECCT-TSSCSEEEEGGG
T ss_pred -h------hccCC-EEEEeccHHHHHHHh-----hCCCCCceEEEEEEEeccccCC-CCeEEEeCCC-CCceeeEEeecc
Confidence 1 13577 799999999876542 3357888989999999877543 3444455432 223456666666
Q ss_pred cCCCCCCCCceEEEEEecC
Q 042352 361 VAPLYGPLDKALISVSLIG 379 (445)
Q Consensus 361 ~~p~~~p~g~~~l~~~~~~ 379 (445)
..|. +.+++++..-+..
T Consensus 285 ~~~~--~~~~~~v~~e~~~ 301 (367)
T 1i8t_A 285 FDYV--ETKHTVVTKEYPL 301 (367)
T ss_dssp GSCC--CCSCEEEEEEEEE
T ss_pred cCCC--CCCCEEEEEEEec
Confidence 6554 3345666544433
No 29
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.91 E-value=3.1e-23 Score=215.03 Aligned_cols=332 Identities=21% Similarity=0.250 Sum_probs=193.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeecc-CCeeecccccchhccC-hhHHHhhcccCCcc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSV-DGFLLDRGFQIFITAY-PEAQKLLDYNALNL 122 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~-~~~~~l~~~lgl~~ 122 (445)
.+..+||+|||||++||+||+.|++.|++|+|+|+++++||++.+... +|..+|.|++++.+.. ..+..+++++|+..
T Consensus 333 ~~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~lGl~~ 412 (776)
T 4gut_A 333 DYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISM 412 (776)
T ss_dssp GGTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHHHTCCC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHHhCCcc
Confidence 345689999999999999999999999999999999999999998754 6899999999887643 35667888888876
Q ss_pred eeecCCcEEEe-CCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHH--------HH
Q 042352 123 QKFYSGAKVYY-NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPII--------EL 193 (445)
Q Consensus 123 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------~~ 193 (445)
........++. +|..... ........ ....+......+... . ....+.++. ++
T Consensus 413 ~~~~~~~~l~~~~g~~~~~-----~~~~~~~~-------~~~~ll~~~~~~~~~--~----~~~~d~sl~~~~~~~~~~~ 474 (776)
T 4gut_A 413 HKFGERCDLIQEGGRITDP-----TIDKRMDF-------HFNALLDVVSEWRKD--K----TQLQDVPLGEKIEEIYKAF 474 (776)
T ss_dssp EECCSCCCEECTTSCBCCH-----HHHHHHHH-------HHHHHHHHHHHHGGG--C----CGGGCCBHHHHHHHHHHHH
T ss_pred cccccccceEccCCcccch-----hHHHHHHH-------HHHHHHHHHHHHhhc--c----cccccccHHHHHHHHHHHH
Confidence 55433322222 2222100 00000000 000110000010000 0 001122333 33
Q ss_pred HHHcCCCHHHHH----HhhhhhhcccccCCccchHHHHHHHH-HHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCce
Q 042352 194 LRNIGFSDSIID----SFFRPFFGGIFFDKELETSSRLFDFI-FKCLALGDNTIPANGICQIPNQIASKLPFESILLNTR 268 (445)
Q Consensus 194 l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~ 268 (445)
++..++...... .+..+.+....+......+...+... ......+....+.+|++.++++|++ |++|++|++
T Consensus 475 l~~~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~~~~~~G~~~l~~aLa~---gl~I~l~t~ 551 (776)
T 4gut_A 475 IKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAE---GLDIQLKSP 551 (776)
T ss_dssp HHHSCCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSCEEECTTCTHHHHHHHHT---TSCEESSCC
T ss_pred HHhcCCCccchhHHHHHHHHHHHHHhcCCChHHcChhhhhhhhhHHhcCCCeEEECChHHHHHHHHHh---CCcEEcCCe
Confidence 333332211000 00000000001111111110000000 0000123455678999999999987 568999999
Q ss_pred eeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhh----hcCC-Cc----ccCCCCCcceEEEEEeecCCCCCC--
Q 042352 269 VLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADK----LLRQ-PV----KFQRKPARSTVCLYFSADKDEIPV-- 337 (445)
Q Consensus 269 V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~----ll~~-p~----~~~~~~~~~~~~v~~~~~~~~~~~-- 337 (445)
|++|+.++++ +.|++.+|++++|+ +||+|+|+..+.+ +.++ |+ ++..+.+.+..++++.|+++||..
T Consensus 552 V~~I~~~~~~-v~V~~~~G~~i~Ad-~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~ 629 (776)
T 4gut_A 552 VQCIDYSGDE-VQVTTTDGTGYSAQ-KVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKV 629 (776)
T ss_dssp EEEEECSSSS-EEEEETTCCEEEES-EEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTHHHH
T ss_pred eEEEEEcCCE-EEEEECCCcEEEcC-EEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccccccC
Confidence 9999988766 77899999889998 7999999999865 2222 32 344566778899999999998642
Q ss_pred -CCCeEE-ecCCC-CcceEEEEeecccCCCCCCCC-ceEEEEEecCC----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352 338 -QEPVLF-LNGSG-KGIVNNMFFATNVAPLYGPLD-KALISVSLIGL----FADVMDDNLTAEVIRELSDWFGKST 405 (445)
Q Consensus 338 -~~~~~~-~~~~~-~~~~~~~~~~s~~~p~~~p~g-~~~l~~~~~~~----~~~~~~~e~~~~~~~~l~~~~~~~~ 405 (445)
....+. +.... ...+..+++++ .|+| ..+|..++.+. +.+++++++++.++++|+++||...
T Consensus 630 ~g~~~fG~l~~~~~~~~~~~~~~d~------~p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg~~~ 699 (776)
T 4gut_A 630 QGADFFGHVPPSASKRGLFAVFYDM------DPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQE 699 (776)
T ss_dssp TTCSEEEECCSSGGGTTEEEEEEES------CTTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCceEEeecCCcCCCceEEEEecC------CCCCCceEEEEEecchhHHHHHcCCHHHHHHHHHHHHHHHhCccc
Confidence 122322 22111 11233344432 2333 35666555543 4678999999999999999998643
No 30
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=99.90 E-value=5.4e-23 Score=200.76 Aligned_cols=250 Identities=16% Similarity=0.228 Sum_probs=162.0
Q ss_pred cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccC--------------------Ceeecccccc
Q 042352 44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVD--------------------GFLLDRGFQI 103 (445)
Q Consensus 44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------------------g~~~d~G~~~ 103 (445)
++++.+||+|||||++|+++|+.|+++|++|+|+|+++.+||++.+++.+ +|.+|+++++
T Consensus 16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~ 95 (475)
T 3p1w_A 16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKF 95 (475)
T ss_dssp -CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCB
T ss_pred cccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeE
Confidence 35567999999999999999999999999999999999999999987532 4678888887
Q ss_pred hhccChhHHHhhcccCCc----ceeecCCcEEEe---------CCeeEeccCCccchHHHHHhhcCCccchHHHHHHh--
Q 042352 104 FITAYPEAQKLLDYNALN----LQKFYSGAKVYY---------NGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIG-- 168 (445)
Q Consensus 104 ~~~~~~~~~~l~~~lgl~----~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (445)
+.. ...+.+++.+.++. ++.... .+++. +|+..+++.. ....+..+..++.++....
T Consensus 96 l~~-~g~L~~lL~~~gv~~ylef~~~~~-~y~~~~~~~~~~~~~g~~~~VPss------~~e~~~~~lLs~~eK~~l~kF 167 (475)
T 3p1w_A 96 ILV-GGNLVKILKKTRVTNYLEWLVVEG-SYVYQHQKKGFLTSEKFIHKVPAT------DMEALVSPLLSLMEKNRCKNF 167 (475)
T ss_dssp EET-TSHHHHHHHHTTCGGGSCEEECSE-EEEEEEECCCSSSCCEEEEECCCS------HHHHHTCTTSCHHHHHHHHHH
T ss_pred eec-CcHHHHHHHHCCchheeEEEecCc-ceEEecCccccccCCCceEeCCCC------HHHHhhccCCCHHHHHHHHHH
Confidence 643 44667777666653 333322 22222 3445544332 2223344555666655421
Q ss_pred hhhhhhhhcchH-HH--hcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchH-----HHHHHHH--HHHhhcC
Q 042352 169 LTRIRVLIKTDE-QI--LTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETS-----SRLFDFI--FKCLALG 238 (445)
Q Consensus 169 ~~~~~~~~~~~~-~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~g 238 (445)
+........... .+ ...+..++.+|+++.++++.....+..++.-... .+..+.+ ..+..+. +..+...
T Consensus 168 L~~l~~~~~~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~-~~~~~~~a~~~l~ri~~y~~Sl~~yg~s 246 (475)
T 3p1w_A 168 YQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLN-DDYLKQPAYLTLERIKLYMQSISAFGKS 246 (475)
T ss_dssp HHHHHHCCTTCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSS-SGGGGSBHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhhccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCcccCCHHHHHHHHHHHHHHHhhcCCC
Confidence 111111101100 11 1235789999999999988866544333221111 1111111 1222222 2233334
Q ss_pred CCccccCccccHHHHHHhcCC--CCcEEeCceeeEEEe-cCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 239 DNTIPANGICQIPNQIASKLP--FESILLNTRVLSIDF-DEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 239 ~~~~~~gG~~~l~~~l~~~l~--g~~i~~n~~V~~I~~-~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
...+|.||++.|+++|++.+. |++|++|++|++|.. +++++++|++.+|++++|+ +||++++..
T Consensus 247 ~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad-~VI~a~~~~ 313 (475)
T 3p1w_A 247 PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCD-KVICDPSYV 313 (475)
T ss_dssp SEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEE-EEEECGGGC
T ss_pred ceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECC-EEEECCCcc
Confidence 678999999999999998775 999999999999998 6666789999999889998 699998765
No 31
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.88 E-value=2.1e-23 Score=211.80 Aligned_cols=352 Identities=13% Similarity=0.062 Sum_probs=192.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--------CCEEEEecCC-CC----------------Ccceeeecc-------CCe
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG--------RPFVLLEASD-AV----------------GGRVRTDSV-------DGF 95 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G--------~~V~vlE~~~-~~----------------GG~~~s~~~-------~g~ 95 (445)
.++|+|||||++||+||+.|+++| ++|+|+|+++ ++ ||++.+... ++.
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~ 135 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDT 135 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCc
Confidence 468999999999999999999998 9999999999 99 999999866 458
Q ss_pred eecccccchhccChhHHHhhccc-CCc--ceeec----CCcEE-------EeCCee-EeccCCc---cchHHHHHhh---
Q 042352 96 LLDRGFQIFITAYPEAQKLLDYN-ALN--LQKFY----SGAKV-------YYNGQF-HTVADPF---RHFWDSIKSL--- 154 (445)
Q Consensus 96 ~~d~G~~~~~~~~~~~~~l~~~l-gl~--~~~~~----~~~~~-------~~~g~~-~~~~~~~---~~~~~~~~~~--- 154 (445)
.+|+|++++...++.+.++++++ |++ ...+. ....+ +++|.. ..+.+.. +.....+...
T Consensus 136 ~~e~G~~~~~~~~~~~~~~~~~l~gl~~~~~~~~~~~~~~~~i~~~~~i~~~~g~~~~~~~~~~~p~p~~~~~v~~~~~~ 215 (721)
T 3ayj_A 136 IYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPTEFVFGNRVDRYVGSDPKDWEDPDSPTLKVLGVVAGGLVG 215 (721)
T ss_dssp EEECSCCCEETTCHHHHHHHHHHHCTTCBCCBCCCBTTBCEEEEETTEEEEESSSCGGGBSSTTCHHHHHHHHHHHHHTC
T ss_pred EEecCCEEecCccHHHHHHHHHhcCCcccccccccCCCCceEEEecCceeeecCccceecccccccCHHHHHHHHHHHHH
Confidence 99999999988888889999998 885 22221 12334 344433 2222111 1111111110
Q ss_pred -cCC--c-----c--ch--HHHHHH-h------hhhhhh-----h---------hcchHHH--hcCCCCcH---HHHHHH
Q 042352 155 -ANP--I-----G--SV--LDKLLI-G------LTRIRV-----L---------IKTDEQI--LTSSEVPI---IELLRN 196 (445)
Q Consensus 155 -~~~--~-----~--~~--~~~~~~-~------~~~~~~-----~---------~~~~~~~--~~~~~~s~---~~~l~~ 196 (445)
... . . .- .+.+.. . +..+.. . ......+ .++++.|+ .+|++.
T Consensus 216 ~~~e~~~~~~~~~~~~p~~v~~ll~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~w~~lla~~~d~~S~~~~~~~L~~ 295 (721)
T 3ayj_A 216 NPQGENVAMYPIANVDPAKIAAILNAATPPADALERIQTKYWPEFIAQYDGLTLGAAVREIVTVAFEKGTLPPVDGVLDV 295 (721)
T ss_dssp CSSSSCCCSSCBTTBCHHHHHHHHTCSSCCHHHHHHHHHTHHHHHHHHHTTBBHHHHHHHHHHHHHHHTSSCCGGGTSCH
T ss_pred HhhhcccccccccccchhhHHHHHHhhhcchhhhhhhhhhhhhhhhhhhccchhhhHHHHHHHHhhcccchhHHHHHHHh
Confidence 000 0 0 00 000000 0 000000 0 0000000 12233344 444422
Q ss_pred c-CCCHHHHHHhhhhhhccccc-CCccchHHH-HHHHHHHHhhcCCCccccCccccHHHHHHhcC-CCCcEEeCceee--
Q 042352 197 I-GFSDSIIDSFFRPFFGGIFF-DKELETSSR-LFDFIFKCLALGDNTIPANGICQIPNQIASKL-PFESILLNTRVL-- 270 (445)
Q Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l-~g~~i~~n~~V~-- 270 (445)
. .++ .....+..+..+..+ .+....+.. .+..... .....++.+.||+++|+++|++.+ +|+.|++|++|+
T Consensus 296 ~~~~s--~~~~~~~~~~~~~gg~~~~~~~S~le~L~~~~~-~~~~~~~~i~GG~~~L~~aLa~~l~~g~~I~l~~~V~~~ 372 (721)
T 3ayj_A 296 DESIS--YYVELFGRFGFGTGGFKPLYNISLVEMMRLILW-DYSNEYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQE 372 (721)
T ss_dssp HHHHH--HHHHHHHHHCSSSSCCGGGTTBBHHHHHHHHHT-TTTCEECCSSSSTHHHHHHHHHHHHHHTTTSEEEEEECE
T ss_pred ccccH--HHHHHHHHHhhccCCCCCccchhHHHHHHHHhc-CCccceeEECCcHHHHHHHHHHhcccCCceEeCCEEEee
Confidence 0 111 111222222111111 111122211 1111111 112346789999999999999987 357899999999
Q ss_pred EEEecCCC------cCeE-EeCCCc--eEEeccEEEEcCChhHHhh------hc-----------------------CC-
Q 042352 271 SIDFDEQN------MPNV-RLANGE--TLKSEIGVILAVEEPEADK------LL-----------------------RQ- 311 (445)
Q Consensus 271 ~I~~~~~~------~~~V-~~~~g~--~i~a~~~VV~a~~~~~~~~------ll-----------------------~~- 311 (445)
+|..++++ .+.| ...+|+ +++|| +||+|+|+..+.. +- ++
T Consensus 373 ~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD-~VIvTvP~~~L~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ppl 451 (721)
T 3ayj_A 373 RVANACHSGTASARAQLLSYDSHNAVHSEAYD-FVILAVPHDQLTPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPL 451 (721)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTCCEEEEEES-EEEECSCHHHHHHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSS
T ss_pred eEEECCCCCccccceEEEEEecCCceEEEEcC-EEEECCCHHHHhhccccccccccccccccccccccccccccccCCcc
Confidence 99987544 2666 445676 68898 7999999988743 21 11
Q ss_pred --C-------c----ccCCCCCcceEEEEEee-----cCCCCCCCCC-eEEecCCCCcceEEE-EeecccCCCCCCCCce
Q 042352 312 --P-------V----KFQRKPARSTVCLYFSA-----DKDEIPVQEP-VLFLNGSGKGIVNNM-FFATNVAPLYGPLDKA 371 (445)
Q Consensus 312 --p-------~----~~~~~~~~~~~~v~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~s~~~p~~~p~g~~ 371 (445)
| . +++...+....|+++.| +++||..... .+....++ ..+..+ ++|+-...+..+++..
T Consensus 452 Llp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~~g~~i~~s~TD-~~~r~~~~~p~p~~~d~~~~~~g 530 (721)
T 3ayj_A 452 LLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQWRGEPIKAVVSD-SGLAASYVVPSPIVEDGQAPEYS 530 (721)
T ss_dssp CCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEETTEECCEEEET-TTTEEEEEEECSCC----CCSEE
T ss_pred cCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcccccCCCCceeeecC-CCcceEEEeccCcccccCCCCCc
Confidence 2 2 45678899999999999 8998754311 11111111 122222 2232110112344444
Q ss_pred EEEEE-ecCC----C------CCCCChHH-------HHHHHHHHH--hHhCCC
Q 042352 372 LISVS-LIGL----F------ADVMDDNL-------TAEVIRELS--DWFGKS 404 (445)
Q Consensus 372 ~l~~~-~~~~----~------~~~~~~e~-------~~~~~~~l~--~~~~~~ 404 (445)
++.++ ..++ + ..+++++. ++.++++|. +++|+.
T Consensus 531 vlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~~~l~~la~~~~~p~~ 583 (721)
T 3ayj_A 531 SLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRYVKYAGA 583 (721)
T ss_dssp EEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHHHHHHHTCCEECCTTC
T ss_pred EEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHHHHHHHHhhhccCccc
Confidence 44443 3322 3 34455555 999999999 898863
No 32
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.88 E-value=1.8e-20 Score=177.81 Aligned_cols=288 Identities=17% Similarity=0.189 Sum_probs=185.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc-ceeec
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN-LQKFY 126 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~-~~~~~ 126 (445)
++||+|||||++||++|+.|+++|.+|+||||++.+||+..+....+..++.|...+....+.+.++++.+... ...
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQAQGHVA-- 79 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHHHHHTSEE--
T ss_pred CceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCCeEecCCHHHHHHHHHHHhCCCee--
Confidence 36999999999999999999999999999999999999999988888889998887765555555554432110 000
Q ss_pred CCcEEEeCCeeEeccCCccchHHHHHhhcCCccchHHHHHHhhhhhhhhhcchHHHhcCCCCcHHHHHHHcCCCHHHHHH
Q 042352 127 SGAKVYYNGQFHTVADPFRHFWDSIKSLANPIGSVLDKLLIGLTRIRVLIKTDEQILTSSEVPIIELLRNIGFSDSIIDS 206 (445)
Q Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~ 206 (445)
.+.+.+... ... .+
T Consensus 80 -----~~~~~~~~~---------------------------------------------~~~---------~~------- 93 (336)
T 1yvv_A 80 -----EWTPLLYNF---------------------------------------------HAG---------RL------- 93 (336)
T ss_dssp -----EECCCEEEE---------------------------------------------SSS---------BC-------
T ss_pred -----eccccceec---------------------------------------------cCc---------cc-------
Confidence 000000000 000 00
Q ss_pred hhhhhhcccccCCccchHHHHHHHHHHHhhcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCC
Q 042352 207 FFRPFFGGIFFDKELETSSRLFDFIFKCLALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLAN 286 (445)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~ 286 (445)
.... .....+....|++.+.++|.+ |++|+++++|++|+.++++ +.|++.+
T Consensus 94 ----------~~~~---------------~~~~~~~~~~~~~~l~~~l~~---g~~i~~~~~v~~i~~~~~~-~~v~~~~ 144 (336)
T 1yvv_A 94 ----------SPSP---------------DEQVRWVGKPGMSAITRAMRG---DMPVSFSCRITEVFRGEEH-WNLLDAE 144 (336)
T ss_dssp ----------CCCC---------------TTSCEEEESSCTHHHHHHHHT---TCCEECSCCEEEEEECSSC-EEEEETT
T ss_pred ----------ccCC---------------CCCccEEcCccHHHHHHHHHc---cCcEEecCEEEEEEEeCCE-EEEEeCC
Confidence 0000 000122335678888888887 6799999999999988765 7788999
Q ss_pred CceEE-eccEEEEcCChhHHhhhcCC-Cc---ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeeccc
Q 042352 287 GETLK-SEIGVILAVEEPEADKLLRQ-PV---KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNV 361 (445)
Q Consensus 287 g~~i~-a~~~VV~a~~~~~~~~ll~~-p~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 361 (445)
|+.+. ++ .||+|+|+..+.+++.. |+ ......+.+..++++.++++++. .....+..+ +++ .+.+.+..
T Consensus 145 g~~~~~a~-~vV~a~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~-~~l~~~~~ 218 (336)
T 1yvv_A 145 GQNHGPFS-HVIIATPAPQASTLLAAAPKLASVVAGVKMDPTWAVALAFETPLQT-PMQGCFVQD---SPL-DWLARNRS 218 (336)
T ss_dssp SCEEEEES-EEEECSCHHHHGGGGTTCHHHHHHHTTCCEEEEEEEEEEESSCCSC-CCCEEEECS---SSE-EEEEEGGG
T ss_pred CcCccccC-EEEEcCCHHHHHHhhccCHHHHHHHhhcCccceeEEEEEecCCCCC-CCCeEEeCC---Cce-eEEEecCc
Confidence 97664 77 79999999998888755 33 35667788999999999988632 222323322 333 44555544
Q ss_pred CCCCCCCCceEEEEEecC----CCCCCCChHHHHHHHHHHHhHhCCCc-CCCceEeeEeecCCCCCCCCCCCCCCCCCcc
Q 042352 362 APLYGPLDKALISVSLIG----LFADVMDDNLTAEVIRELSDWFGKST-VGSWRHLRTYRVRFAQPNQSPPTDLIKNPKS 436 (445)
Q Consensus 362 ~p~~~p~g~~~l~~~~~~----~~~~~~~~e~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 436 (445)
.|...+.+..++ ++... ...+++++++.+.+++.+.+++|... ...|... .|+.++.+....+... ..
T Consensus 219 ~p~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~~~~~p~~~~~--~rw~~a~~~~~~~~~~----~~ 291 (336)
T 1yvv_A 219 KPERDDTLDTWI-LHATSQWSRQNLDASREQVIEHLHGAFAELIDCTMPAPVFSLA--HRWLYARPAGAHEWGA----LS 291 (336)
T ss_dssp STTCCCSSEEEE-EEECHHHHHHTTTSCHHHHHHHHHHHHHTTCSSCCCCCSEEEE--EEEEEEEESSCCCCSC----EE
T ss_pred CCCCCCCCcEEE-EEeCHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEc--cccCccCCCCCCCCCe----ee
Confidence 555444333333 33222 25577899999999999999998632 2344433 3333444444433322 12
Q ss_pred cCCCCeeeC
Q 042352 437 EFSLAVYLC 445 (445)
Q Consensus 437 t~~~g~~~~ 445 (445)
.+.+||+||
T Consensus 292 ~~~~rl~la 300 (336)
T 1yvv_A 292 DADLGIYVC 300 (336)
T ss_dssp ETTTTEEEC
T ss_pred cCCCCEEEE
Confidence 346888886
No 33
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.87 E-value=4e-21 Score=182.56 Aligned_cols=245 Identities=19% Similarity=0.227 Sum_probs=143.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcceeeec----------cCCeeecccccchhccChhHHHh
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS-DAVGGRVRTDS----------VDGFLLDRGFQIFITAYPEAQKL 114 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~-~~~GG~~~s~~----------~~g~~~d~G~~~~~~~~~~~~~l 114 (445)
...+||+|||||++||+||+.|+++|++|+|+|++ +++||++.+.. .+++.+|.|++++...++.+.++
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~ 121 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLAL 121 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHH
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHH
Confidence 45689999999999999999999999999999999 99999999987 35789999999988778889999
Q ss_pred hcccCCcceeecC--------------------------------------------CcEEEeCCeeEeccCCccchHHH
Q 042352 115 LDYNALNLQKFYS--------------------------------------------GAKVYYNGQFHTVADPFRHFWDS 150 (445)
Q Consensus 115 ~~~lgl~~~~~~~--------------------------------------------~~~~~~~g~~~~~~~~~~~~~~~ 150 (445)
++++|+....+.. ...++.+|....... .......
T Consensus 122 ~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~~~-~~~~~~~ 200 (376)
T 2e1m_A 122 IDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQ-YATDPSS 200 (376)
T ss_dssp HHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEHHH-HHHCTHH
T ss_pred HHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceecccc-cccCHHH
Confidence 9999987654321 123333443221100 0000000
Q ss_pred HHhhcCC-c----cchHHHHHHhhhhhhhhh------------------cch-HHHhcCCCCcHHHHHH-HcCCCHHHHH
Q 042352 151 IKSLANP-I----GSVLDKLLIGLTRIRVLI------------------KTD-EQILTSSEVPIIELLR-NIGFSDSIID 205 (445)
Q Consensus 151 ~~~~~~~-~----~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~~s~~~~l~-~~~~~~~~~~ 205 (445)
+...... . ....+.+...+..+.... ... .....++..|+.+||+ +.+++....+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~S~~~~L~~~~g~s~~~~~ 280 (376)
T 2e1m_A 201 INEGFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLREYAEFSDEAVE 280 (376)
T ss_dssp HHHHTTCCGGGGGSCHHHHHHHHHHHHHHHHEEEETTTEEEECCHHHHHHHHHHHHHHHTTCBHHHHHHHTSCCCHHHHH
T ss_pred hccccCCchhhcccCHHHHHHHHHHHHHHhhhhccccccccccccchhhccchHHHHHHhCCCHHHHHhhccCCCHHHHH
Confidence 0000000 0 001111111111111100 001 1123468899999998 7888877655
Q ss_pred HhhhhhhcccccCCccchHHHHHHHHHHH--h-hcCCCccccCccccHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeE
Q 042352 206 SFFRPFFGGIFFDKELETSSRLFDFIFKC--L-ALGDNTIPANGICQIPNQIASKLPFESILLNTRVLSIDFDEQNMPNV 282 (445)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~~~~~gG~~~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V 282 (445)
.+ ..+. .+... ...+ ++..+... + ....++.+.||+++|+++|++.+ +.+|++|++|++|..+++++. |
T Consensus 281 ~~-~~~~--~~~~~-~~~s--~l~~l~~~~~~~~~~~~~~i~GG~~~l~~~l~~~l-~~~i~l~~~V~~I~~~~~gv~-v 352 (376)
T 2e1m_A 281 AI-GTIE--NMTSR-LHLA--FFHSFLGRSDIDPRATYWEIEGGSRMLPETLAKDL-RDQIVMGQRMVRLEYYDPGRD-G 352 (376)
T ss_dssp HH-HHHT--TCTTT-TTSB--HHHHHHHCSCSCTTCCEEEETTCTTHHHHHHHHHG-GGTEECSEEEEEEEECCCC----
T ss_pred HH-Hhhc--Ccccc-chhh--HHHHHHHhhhhccCCceEEECCcHHHHHHHHHHhc-CCcEEecCeEEEEEECCCceE-E
Confidence 44 2222 11111 1111 11111111 1 22457789999999999999999 679999999999999887643 3
Q ss_pred EeCCCceEEeccEEEEcC
Q 042352 283 RLANGETLKSEIGVILAV 300 (445)
Q Consensus 283 ~~~~g~~i~a~~~VV~a~ 300 (445)
...+....... +|.+.+
T Consensus 353 ~~~~~~~~~g~-~~~~~~ 369 (376)
T 2e1m_A 353 HHGELTGPGGP-AVAIQT 369 (376)
T ss_dssp ----------C-CEEEEE
T ss_pred EeCCCcCCCCC-eeEEEe
Confidence 33322223455 466554
No 34
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=99.85 E-value=1e-18 Score=175.33 Aligned_cols=186 Identities=11% Similarity=0.062 Sum_probs=114.9
Q ss_pred HhcCCCCcHHHHHHHcCCCHHHHHHhhhhhhcccccCCccchHHHH---HHHHHHH--hhcCCCccccCccccHHHHHHh
Q 042352 182 ILTSSEVPIIELLRNIGFSDSIIDSFFRPFFGGIFFDKELETSSRL---FDFIFKC--LALGDNTIPANGICQIPNQIAS 256 (445)
Q Consensus 182 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~g~~~~~~gG~~~l~~~l~~ 256 (445)
+..++..++.+|+++.++++... .++...+ +++..........+ ..++... +..+++.+|.||++.|+++|++
T Consensus 309 ~~~~d~~S~~d~L~~~~ls~~L~-~~L~~~l-al~~~~~~pa~~~l~~i~~~l~sl~~yg~sg~~yp~GG~g~L~qaL~r 386 (650)
T 1vg0_A 309 YRAYEGTTFSEYLKTQKLTPNLQ-YFVLHSI-AMTSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCR 386 (650)
T ss_dssp HHTTTTSBHHHHHTTSSSCHHHH-HHHHHHT-TC--CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTHHHHHHHH
T ss_pred HhhhccCCHHHHHHHhCCCHHHH-HHHHHHH-hccCCCCCchhHHHHHHHHHHHHHHhhccCceEEeCCchhHHHHHHHH
Confidence 34567899999999987777644 4433222 33322211111111 1111111 2224788999999999999988
Q ss_pred cCC--CCcEEeCceeeEEEecC--CCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCCCcccCCCCCcceEEEEEeecC
Q 042352 257 KLP--FESILLNTRVLSIDFDE--QNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQPVKFQRKPARSTVCLYFSADK 332 (445)
Q Consensus 257 ~l~--g~~i~~n~~V~~I~~~~--~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~p~~~~~~~~~~~~~v~~~~~~ 332 (445)
.+. |++|++|++|++|..++ +++++|+..+|++++|+ +||++. ..+ +. .......+....++.+.+++
T Consensus 387 ~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~-~VVs~~--~~l----p~-~~~~~~~~~~v~R~i~i~~~ 458 (650)
T 1vg0_A 387 MCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISK-HFIIED--SYL----SE-NTCSRVQYRQISRAVLITDG 458 (650)
T ss_dssp HHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECS-EEEEEG--GGB----CT-TTTTTCCCEEEEEEEEEESS
T ss_pred HHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcC-EEEECh--hhc----CH-hHhccccccceEEEEEEecC
Confidence 775 99999999999999887 66778888889999998 688722 222 11 11111223456777777777
Q ss_pred CCCCCC----CCeEEecCCC-CcceEEEEeecccCCCCCCCCceEEEEEec
Q 042352 333 DEIPVQ----EPVLFLNGSG-KGIVNNMFFATNVAPLYGPLDKALISVSLI 378 (445)
Q Consensus 333 ~~~~~~----~~~~~~~~~~-~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~ 378 (445)
+..+.. ...+.++... ......++.+|. +++.+|+|++++.+...
T Consensus 459 pi~~~~~~~~~~~iiiP~~~g~~~~V~i~~~Ss-~~~~cP~G~~Vv~lst~ 508 (650)
T 1vg0_A 459 SVLRTDADQQVSILTVPAEEPGSFAVRVIELCS-STMTCMKGTYLVHLTCM 508 (650)
T ss_dssp CSSCCSCCCCCEEEEECCSSTTSCCEEEEEECG-GGTSSCTTCEEEEEEEE
T ss_pred CCCCcCCCcceEEEEccCccCCCCCEEEEEeCC-CCCCCCCCCEEEEEEee
Confidence 742221 1233344332 223445667776 77899999999887653
No 35
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.58 E-value=7e-14 Score=137.41 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=47.0
Q ss_pred cHHHHHHhcCC--CCcEEeCc---eeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcC
Q 042352 249 QIPNQIASKLP--FESILLNT---RVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLR 310 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~---~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~ 310 (445)
.+.++|.+.+. |++|++++ +|++|..+++++++|++.+|++++|+ .||+|++.+. .+|++
T Consensus 162 ~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad-~VV~AtG~~s-~~l~~ 226 (438)
T 3dje_A 162 NALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAE-RTFLCAGASA-GQFLD 226 (438)
T ss_dssp HHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECS-EEEECCGGGG-GGTSC
T ss_pred HHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECC-EEEECCCCCh-hhhcC
Confidence 44455554442 99999999 99999988777667999999889998 7999999985 34443
No 36
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.58 E-value=1.1e-13 Score=132.65 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=43.7
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCc--eEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGE--TLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~--~i~a~~~VV~a~~~~~ 304 (445)
.+.++|.+.+. |++|+++++|++|+.++++.+.|.+.+|+ +++|+ .||+|++.+.
T Consensus 151 ~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~-~VV~A~G~~s 209 (369)
T 3dme_A 151 ALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCR-VLINAAGLHA 209 (369)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEE-EEEECCGGGH
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeC-EEEECCCcch
Confidence 34445544442 99999999999999987766778888883 79998 7999999985
No 37
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.49 E-value=1e-13 Score=133.41 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=42.7
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
.+.++|.+.+. |++|+++++|++|+.++++ +.|++.+| +++|+ .||+|++.+.
T Consensus 155 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~-~VV~A~G~~s 209 (381)
T 3nyc_A 155 ALHQGYLRGIRRNQGQVLCNHEALEIRRVDGA-WEVRCDAG-SYRAA-VLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCCCEEEEETTE-EEEECSSE-EEEES-EEEECCGGGH
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCe-EEEEeCCC-EEEcC-EEEECCChhH
Confidence 44455554442 9999999999999988765 78888888 79998 7999999985
No 38
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.43 E-value=5.2e-13 Score=138.20 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=44.1
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
.+.++|.+.+. |++|+++++|++|..++++ +.|++.+|++++|+ .||+|++.+.
T Consensus 418 ~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~i~Ad-~VVlAtG~~s 473 (676)
T 3ps9_A 418 ELTRNVLELAQQQGLQIYYQYQLQNFSRKDDC-WLLNFAGDQQATHS-VVVLANGHQI 473 (676)
T ss_dssp HHHHHHHHHHHHTTCEEEESCCEEEEEEETTE-EEEEETTSCEEEES-EEEECCGGGG
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCe-EEEEECCCCEEECC-EEEECCCcch
Confidence 45555554442 9999999999999998766 68899888889998 7999999984
No 39
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.40 E-value=1.1e-12 Score=135.99 Aligned_cols=55 Identities=7% Similarity=0.028 Sum_probs=43.5
Q ss_pred ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCc-eEEeccEEEEcCChhH
Q 042352 248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGE-TLKSEIGVILAVEEPE 304 (445)
Q Consensus 248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~-~i~a~~~VV~a~~~~~ 304 (445)
..+.++|.+.+. |++|+++++|++|+.++++ +.|++.+|+ +++|+ .||+|++.+.
T Consensus 412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~~i~Ad-~VVlAtG~~s 469 (689)
T 3pvc_A 412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ-WQLTFGQSQAAKHHA-TVILATGHRL 469 (689)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS-EEEEEC-CCCCEEES-EEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe-EEEEeCCCcEEEECC-EEEECCCcch
Confidence 345555555442 9999999999999998776 788888887 79998 7999999984
No 40
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.39 E-value=3.5e-13 Score=123.68 Aligned_cols=65 Identities=32% Similarity=0.477 Sum_probs=58.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHH
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQ 112 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~ 112 (445)
.+||+|||||++||+||+.|+++|++|+||||++.+||++.+...++..+|+|.+.+......+.
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~~~~~~~~ 66 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFA 66 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCccccccCcHHHH
Confidence 48999999999999999999999999999999999999999999999999999987755444443
No 41
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.38 E-value=4.2e-13 Score=130.19 Aligned_cols=42 Identities=31% Similarity=0.610 Sum_probs=37.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
+..+||+|||||++||+||+.|+++|++|+|+|+++.+|+..
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~ 66 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKI 66 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence 456899999999999999999999999999999999988755
No 42
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.38 E-value=1.2e-12 Score=126.14 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=42.0
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
.+.+.|.+.+. |++|+.+++|++|+.+++++++|++.+| +++|+ .||+|++.+.
T Consensus 150 ~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~-~VV~A~G~~s 205 (382)
T 1y56_B 150 EATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTG-IVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECS-EEEECCGGGH
T ss_pred HHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECC-EEEECcchhH
Confidence 34444444332 9999999999999988766555888888 79998 7999999985
No 43
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.36 E-value=1.1e-12 Score=128.89 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=44.6
Q ss_pred ccHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 248 CQIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 248 ~~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
..+.+.|.+.+. |++|+++++|++|..+++++++|++.+|++++|+ .||+|++.+.
T Consensus 134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad-~VVlAtGg~s 191 (447)
T 2i0z_A 134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN-HVVIAVGGKS 191 (447)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS-CEEECCCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECC-EEEECCCCCc
Confidence 345555555443 9999999999999987666688999999779998 6999999865
No 44
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.35 E-value=4.3e-12 Score=123.21 Aligned_cols=54 Identities=22% Similarity=0.210 Sum_probs=43.2
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
.+.+.|.+.+. |++|+.+++|++|..+++++++|++.+| +++|+ .||+|++.+.
T Consensus 175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~-~vV~a~G~~s 230 (405)
T 2gag_B 175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAG-KVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEE-EEEECCGGGH
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECC-EEEECCchhH
Confidence 44455554442 9999999999999988766678888888 78998 7999999875
No 45
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.31 E-value=1e-11 Score=119.16 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=44.1
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHHhhhcCC
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEADKLLRQ 311 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~~~ll~~ 311 (445)
.+.++|.+.+. |++|+.+++|++|+.++++ +.|++.+| +++|+ .||+|++.+. .+|+++
T Consensus 150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~g-~~~a~-~vV~a~G~~s-~~l~~~ 210 (372)
T 2uzz_A 150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG-VTIETADG-EYQAK-KAIVCAGTWV-KDLLPE 210 (372)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECSSS-EEEEESSC-EEEEE-EEEECCGGGG-GGTSTT
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE-EEEEECCC-eEEcC-EEEEcCCccH-Hhhccc
Confidence 34444444332 8999999999999987765 67888887 58998 7999999985 455543
No 46
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=99.27 E-value=8e-12 Score=123.03 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~~~GG 85 (445)
.++||+|||||++|+++|+.|+++| ++|+|+|++..+|+
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~ 61 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGS 61 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCC
Confidence 5689999999999999999999999 99999999555554
No 47
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=99.27 E-value=1.3e-10 Score=117.32 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=37.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++|+++|+.|+++|++|+|+|+++..||..
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS 57 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTS 57 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCcc
Confidence 46999999999999999999999999999999998777654
No 48
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.27 E-value=1.4e-11 Score=118.49 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=36.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
.+.++||+|||||++|+++|+.|+++|++|+|+|++...+|
T Consensus 14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g 54 (382)
T 1ryi_A 14 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR 54 (382)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence 34568999999999999999999999999999999876554
No 49
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.27 E-value=2.9e-11 Score=117.06 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=35.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+||+|||||++||++|+.|+++|++|+|+||++..+
T Consensus 3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~ 40 (397)
T 2oln_A 3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN 40 (397)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 35799999999999999999999999999999987765
No 50
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.25 E-value=1.6e-11 Score=118.71 Aligned_cols=42 Identities=29% Similarity=0.574 Sum_probs=38.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
|+.+||+|||||++|++||+.|+++|.+|+|+|+++.+|+..
T Consensus 2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~ 43 (401)
T 2gqf_A 2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI 43 (401)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhc
Confidence 446899999999999999999999999999999999887654
No 51
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=99.24 E-value=1e-10 Score=116.90 Aligned_cols=41 Identities=32% Similarity=0.524 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||+.|+++|++|+|+||.+.+||.+
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s 80 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGAT 80 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence 46899999999999999999999999999999999999865
No 52
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.23 E-value=5.2e-11 Score=126.03 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=43.5
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
.+.++|.+.+. |++|+.+++|++|+.+++++++|.+.+| +++|+ .||+|++.+.
T Consensus 152 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad-~VV~AaG~~s 207 (830)
T 1pj5_A 152 RAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPAD-IVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECS-EEEECCGGGH
T ss_pred HHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECC-EEEECCccch
Confidence 44555554443 9999999999999988766667888888 79998 7999999986
No 53
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=99.22 E-value=7.4e-11 Score=117.62 Aligned_cols=54 Identities=28% Similarity=0.434 Sum_probs=43.9
Q ss_pred HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
+.+.|.+.+. |++|+++++|++|..+++++++|++.+|+++.|+ .||+|++.+.
T Consensus 222 l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad-~VVlA~G~~s 277 (549)
T 3nlc_A 222 MIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSR-HVVLAVGHSA 277 (549)
T ss_dssp HHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECS-CEEECCCTTC
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECC-EEEECCCCCh
Confidence 3444443332 9999999999999998777778999999899998 6999999975
No 54
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=99.21 E-value=1.6e-11 Score=119.33 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH-Hhhhc
Q 042352 250 IPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE-ADKLL 309 (445)
Q Consensus 250 l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll 309 (445)
+.+.|.+.++.++|+++++|++|+.++++ +.|++.+|++++|+ .||.|.+.+. +.+.+
T Consensus 129 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~-~vV~AdG~~S~vr~~l 187 (407)
T 3rp8_A 129 LQREMLDYWGRDSVQFGKRVTRCEEDADG-VTVWFTDGSSASGD-LLIAADGSHSALRPWV 187 (407)
T ss_dssp HHHHHHHHHCGGGEEESCCEEEEEEETTE-EEEEETTSCEEEES-EEEECCCTTCSSHHHH
T ss_pred HHHHHHHhCCcCEEEECCEEEEEEecCCc-EEEEEcCCCEEeeC-EEEECCCcChHHHHHh
Confidence 33344443323699999999999988765 77889999999998 7999999875 34444
No 55
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.20 E-value=7.7e-11 Score=113.62 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=41.2
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
.+.+.|.+.+. |++|+.+++|++|+.++++ +.|++.+| +++|+ .||+|++.+.
T Consensus 151 ~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~-~vV~A~G~~~ 205 (389)
T 2gf3_A 151 NCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETANG-SYTAD-KLIVSMGAWN 205 (389)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETTE-EEEEE-EEEECCGGGH
T ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-EEEEeCCC-EEEeC-EEEEecCccH
Confidence 44444544442 9999999999999987765 66888776 79998 7999999985
No 56
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=99.14 E-value=2.7e-10 Score=110.17 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=44.2
Q ss_pred HHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352 252 NQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR 310 (445)
Q Consensus 252 ~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~ 310 (445)
+.|.+.++|++|+++++|++|+.++++ +.|++.+|++++++ .||.|.+.+.. .+.+.
T Consensus 103 ~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad-~vV~AdG~~S~vr~~~~ 160 (397)
T 2vou_A 103 GGLYELFGPERYHTSKCLVGLSQDSET-VQMRFSDGTKAEAN-WVIGADGGASVVRKRLL 160 (397)
T ss_dssp HHHHHHHCSTTEETTCCEEEEEECSSC-EEEEETTSCEEEES-EEEECCCTTCHHHHHHH
T ss_pred HHHHHhCCCcEEEcCCEEEEEEecCCE-EEEEECCCCEEECC-EEEECCCcchhHHHHhc
Confidence 344443447899999999999988765 67889999889998 79999999753 44444
No 57
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=99.12 E-value=6.7e-11 Score=119.72 Aligned_cols=41 Identities=29% Similarity=0.536 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||+.|+++|.+|+||||.+.+||..
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s 160 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS 160 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence 46899999999999999999999999999999999998754
No 58
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=99.12 E-value=6.4e-10 Score=112.69 Aligned_cols=42 Identities=31% Similarity=0.575 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||++||+||+.|+++|++|+||||.+.+||...
T Consensus 125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~ 166 (571)
T 1y0p_A 125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 166 (571)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence 368999999999999999999999999999999999988653
No 59
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=99.12 E-value=5.5e-10 Score=108.06 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=47.5
Q ss_pred cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352 249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR 310 (445)
Q Consensus 249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~ 310 (445)
.+.+.|.+.+++++|+++++|++|+.++++ +.|++.+|++++++ .||.|.+.+.. .+.+.
T Consensus 129 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad-~vV~AdG~~S~vR~~l~ 189 (398)
T 2xdo_A 129 DLRAILLNSLENDTVIWDRKLVMLEPGKKK-WTLTFENKPSETAD-LVILANGGMSKVRKFVT 189 (398)
T ss_dssp HHHHHHHHTSCTTSEEESCCEEEEEECSSS-EEEEETTSCCEEES-EEEECSCTTCSCCTTTC
T ss_pred HHHHHHHhhcCCCEEEECCEEEEEEECCCE-EEEEECCCcEEecC-EEEECCCcchhHHhhcc
Confidence 456677777666799999999999988754 67888999889998 79999998753 44443
No 60
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=99.11 E-value=1.2e-10 Score=117.84 Aligned_cols=41 Identities=29% Similarity=0.367 Sum_probs=36.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
+|+.+||+|||||++|+++|+.|+++|++|+|+|+.+.+++
T Consensus 20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~ 60 (591)
T 3i3l_A 20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY 60 (591)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC
Confidence 45579999999999999999999999999999999866543
No 61
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.11 E-value=2.5e-10 Score=114.61 Aligned_cols=50 Identities=38% Similarity=0.502 Sum_probs=41.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceeeeccCCe
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRTDSVDGF 95 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~ 95 (445)
+..+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.....+|.
T Consensus 19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~ 68 (549)
T 4ap3_A 19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGA 68 (549)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTC
T ss_pred CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCc
Confidence 34589999999999999999999999999999999999986654333333
No 62
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.08 E-value=1.3e-10 Score=112.27 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
+++||+|||||++||++|+.|+++|++|+|+|+++.+|+
T Consensus 3 ~~~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~ 41 (397)
T 3cgv_A 3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 358999999999999999999999999999999987765
No 63
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=99.07 E-value=2.4e-10 Score=113.53 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=37.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.++||+|||||++||+||+.|++.|++|+|+|+ +.+||.+.
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~ 65 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCV 65 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCcee
Confidence 368999999999999999999999999999999 78898764
No 64
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=99.06 E-value=1.8e-09 Score=107.37 Aligned_cols=42 Identities=33% Similarity=0.380 Sum_probs=36.2
Q ss_pred ccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 43 SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 43 ~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
+.++.++||+|||||++||++|+.|+++|.+|+|+||.+.++
T Consensus 6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~ 47 (500)
T 2qa1_A 6 HHHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERT 47 (500)
T ss_dssp --CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-C
T ss_pred CCccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 445567999999999999999999999999999999987764
No 65
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.06 E-value=5.1e-10 Score=112.68 Aligned_cols=42 Identities=38% Similarity=0.597 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~ 56 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY 56 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence 468999999999999999999999999999999999998653
No 66
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=99.06 E-value=3.9e-10 Score=109.45 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=47.3
Q ss_pred cHHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH-hhhcC
Q 042352 249 QIPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA-DKLLR 310 (445)
Q Consensus 249 ~l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~-~~ll~ 310 (445)
.+.+.|.+.+ +.+|+++++|++++..+++.+.|+++||++++|+ .||-|-+.... .+.+.
T Consensus 113 ~L~~~L~~~~-~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~ad-lvVgADG~~S~vR~~l~ 173 (412)
T 4hb9_A 113 ELKEILNKGL-ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVD-VLVGADGSNSKVRKQYL 173 (412)
T ss_dssp HHHHHHHTTC-TTTEECSCCEEEEEECTTSCEEEEETTSCEEEES-EEEECCCTTCHHHHHHS
T ss_pred HHHHHHHhhc-cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEee-EEEECCCCCcchHHHhC
Confidence 4556677777 5789999999999987776688999999999998 68888888653 44443
No 67
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.05 E-value=5.6e-10 Score=111.92 Aligned_cols=48 Identities=31% Similarity=0.479 Sum_probs=40.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCCEEEEecCCCCCcceeeeccCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLH-SQGRPFVLLEASDAVGGRVRTDSVDG 94 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~-~~G~~V~vlE~~~~~GG~~~s~~~~g 94 (445)
..+||+|||||++||++|+.|+ +.|++|+|+|+++.+||.+.....+|
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg 55 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPG 55 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCC
Confidence 3579999999999999999999 88999999999999998664433333
No 68
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.05 E-value=1.1e-09 Score=106.63 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=40.4
Q ss_pred CCcEEeCceeeEEEecCCC-cCeEEeCCCc--eEEeccEEEEcCChhH-HhhhcCC
Q 042352 260 FESILLNTRVLSIDFDEQN-MPNVRLANGE--TLKSEIGVILAVEEPE-ADKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~--~i~a~~~VV~a~~~~~-~~~ll~~ 311 (445)
|++|+.+++|++|+.++++ .+.|.+.+|+ +++|+ .||.|++.+. +.++++.
T Consensus 120 gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~-~vV~A~G~~s~l~~~~g~ 174 (421)
T 3nix_A 120 GVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEAR-FIIDASGYGRVIPRMFGL 174 (421)
T ss_dssp TCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEE-EEEECCGGGCHHHHHTTC
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcC-EEEECCCCchhhHHhcCC
Confidence 8999999999999988655 3566778887 69998 7999999875 3455544
No 69
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=99.04 E-value=1.5e-09 Score=100.93 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
.|+.|||+|||||++||+||.+|+++|++|+|+|++ .+||
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg 42 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRN 42 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGG
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCC
Confidence 467899999999999999999999999999999986 4455
No 70
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=99.03 E-value=1.6e-09 Score=103.36 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=38.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
|+..+||+|||||++||++|+.|+++|++|+|+|+++.+||.+
T Consensus 11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~ 53 (360)
T 3ab1_A 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQL 53 (360)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcc
Confidence 4557899999999999999999999999999999999888754
No 71
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=99.02 E-value=8.7e-10 Score=106.67 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=41.7
Q ss_pred CCcEEeCceeeEEEecCCCcC-eEEeCCCceEEeccEEEEcCChhH-HhhhcCC
Q 042352 260 FESILLNTRVLSIDFDEQNMP-NVRLANGETLKSEIGVILAVEEPE-ADKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~-~V~~~~g~~i~a~~~VV~a~~~~~-~~~ll~~ 311 (445)
|++|+++++|++|+.++++++ .|++.+|++++++ .||.|++.+. +.+.++.
T Consensus 122 gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad-~vV~AdG~~s~vr~~lg~ 174 (399)
T 2x3n_A 122 TVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPR-VVVGADGIASYVRRRLLD 174 (399)
T ss_dssp TEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEE-EEEECCCTTCHHHHHTSC
T ss_pred CcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECC-EEEECCCCChHHHHHhCC
Confidence 789999999999998876632 8999999889998 7999999875 4555544
No 72
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.02 E-value=1.6e-09 Score=99.58 Aligned_cols=40 Identities=35% Similarity=0.549 Sum_probs=37.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~GG~ 86 (445)
.++||+|||||++||++|+.|++. |.+|+|+|+++.+||.
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~ 78 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG 78 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc
Confidence 458999999999999999999997 9999999999988874
No 73
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=99.00 E-value=9.9e-10 Score=104.31 Aligned_cols=41 Identities=37% Similarity=0.588 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
+++||+|||||++||++|+.|+++|++|+|+|+++.+||.+
T Consensus 2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~ 42 (357)
T 4a9w_A 2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAW 42 (357)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 35799999999999999999999999999999999999864
No 74
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=99.00 E-value=2.9e-09 Score=102.23 Aligned_cols=39 Identities=36% Similarity=0.491 Sum_probs=35.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+||+|||||++||++|+.|+++|++|+|+|+++.+++
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~ 48 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA 48 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence 468999999999999999999999999999999887764
No 75
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=98.99 E-value=3.2e-09 Score=105.53 Aligned_cols=40 Identities=35% Similarity=0.405 Sum_probs=35.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
...++||+|||||++||++|+.|+++|.+|+||||.+.++
T Consensus 9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~ 48 (499)
T 2qa2_A 9 HRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRT 48 (499)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCC
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 3456899999999999999999999999999999987664
No 76
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=98.99 E-value=6.9e-09 Score=104.83 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=36.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G 69 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG 69 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence 468999999999999999999999999999999876665
No 77
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=98.99 E-value=1.3e-09 Score=102.44 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=37.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
.+||+|||||++||+||..|+++|++|+|+|+++.+||..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~ 46 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL 46 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence 4799999999999999999999999999999999988755
No 78
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=98.99 E-value=1.5e-09 Score=108.15 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
+.+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g 40 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA 40 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence 468999999999999999999999999999999875444
No 79
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=98.98 E-value=3.1e-09 Score=100.17 Aligned_cols=41 Identities=27% Similarity=0.509 Sum_probs=37.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
+++||+|||||++||++|+.|+++|++|+|+|+++.+||.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~ 44 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL 44 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHH
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCee
Confidence 45899999999999999999999999999999999888754
No 80
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.97 E-value=3.1e-09 Score=102.59 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=40.3
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEe-CCCc--eEEeccEEEEcCChhHH-hhhcCC
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRL-ANGE--TLKSEIGVILAVEEPEA-DKLLRQ 311 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~-~~g~--~i~a~~~VV~a~~~~~~-~~ll~~ 311 (445)
|++|+++++|++|+.++++.+.|++ .+|+ +++|+ .||.|.+.+.. .+.++.
T Consensus 117 g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~-~vV~AdG~~S~vr~~l~~ 171 (394)
T 1k0i_A 117 GATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCD-YIAGCDGFHGISRQSIPA 171 (394)
T ss_dssp TCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECS-EEEECCCTTCSTGGGSCG
T ss_pred CCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeC-EEEECCCCCcHHHHhcCc
Confidence 8999999999999887544577887 7887 68998 79999998753 455543
No 81
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=98.96 E-value=2.1e-09 Score=107.91 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~ 49 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY 49 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence 468999999999999999999999999999999999998654
No 82
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.96 E-value=6.5e-10 Score=112.47 Aligned_cols=41 Identities=39% Similarity=0.599 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||+.|+++|++|+|+|+.+.+||..
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~ 165 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT 165 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcch
Confidence 35799999999999999999999999999999999998865
No 83
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=98.96 E-value=7.6e-10 Score=111.38 Aligned_cols=38 Identities=34% Similarity=0.545 Sum_probs=35.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+||+|||||++||++|+.|+++|.+|+||||++.++
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~ 41 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS 41 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 35899999999999999999999999999999987654
No 84
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=98.95 E-value=1.1e-09 Score=109.54 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
.++||+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~ 42 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP 42 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCC
Confidence 3589999999999999999999999999999998743
No 85
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.95 E-value=6.1e-09 Score=101.24 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=38.5
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++|+++++|++|+.+++++..|++.+|+++.+| .||+|++..
T Consensus 208 GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD-~Vv~a~G~~ 250 (415)
T 3lxd_A 208 GVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPAD-IVIVGIGIV 250 (415)
T ss_dssp TCEEEETCCEEEEEESSSBEEEEEESSSCEEECS-EEEECSCCE
T ss_pred CCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcC-EEEECCCCc
Confidence 9999999999999987766668999999999998 799999874
No 86
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.95 E-value=5e-09 Score=104.92 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=40.8
Q ss_pred cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.++.++||+|||||++|++||+.|++.|++|+|+|+++.+||.+.
T Consensus 39 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 83 (523)
T 1mo9_A 39 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP 83 (523)
T ss_dssp TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence 345679999999999999999999999999999999988998764
No 87
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.94 E-value=5.3e-09 Score=105.90 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=36.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
.+||+|||||++||+||+.|+++|.+|+|+||....||.
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~ 45 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH 45 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 579999999999999999999999999999998877653
No 88
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.94 E-value=3.6e-09 Score=102.71 Aligned_cols=39 Identities=33% Similarity=0.564 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASDAVG 84 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~~~G 84 (445)
+..+||+|||||++||++|..|++.|.+ |+|+|+.+.++
T Consensus 2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~ 41 (410)
T 3c96_A 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 41 (410)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcc
Confidence 4568999999999999999999999999 99999987765
No 89
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=98.94 E-value=4.5e-09 Score=98.25 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
++||+|||||++||+||+.|+++|++|+|+|++ +||.+.
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~ 53 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLT 53 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGG
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeec
Confidence 589999999999999999999999999999997 777654
No 90
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=98.93 E-value=9.1e-10 Score=108.70 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=37.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
++||+|||||++||+||+.|++.|++|+|+|+ +.+||.+.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~ 44 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV 44 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence 58999999999999999999999999999999 78998653
No 91
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.93 E-value=1.1e-09 Score=106.21 Aligned_cols=38 Identities=34% Similarity=0.466 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG 85 (445)
.+||+|||||++|+++|+.|+++ |++|+|+|++...+|
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~ 75 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNE 75 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCT
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence 48999999999999999999999 999999999865544
No 92
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=98.92 E-value=2e-09 Score=108.64 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+||+|||||++||++|+.|+++|++|+|||+.+.++
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~ 85 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV 85 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence 35899999999999999999999999999999987653
No 93
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.91 E-value=8.2e-09 Score=96.05 Aligned_cols=41 Identities=32% Similarity=0.505 Sum_probs=37.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||++|+.|+++ |++|+|+|++..+||.+
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~ 120 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA 120 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence 358999999999999999999997 99999999999888744
No 94
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.90 E-value=1.2e-08 Score=98.83 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=43.1
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
.+.+.+.+.+. |++|+++++|++|+.+++++.+|++.+|+++.+| .||+|++..
T Consensus 185 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD-~Vv~a~G~~ 240 (404)
T 3fg2_P 185 EISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCD-LVVVGVGVI 240 (404)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECS-EEEECCCEE
T ss_pred HHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcC-EEEECcCCc
Confidence 34444444332 9999999999999987766678999999999998 799999874
No 95
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.89 E-value=3.1e-09 Score=106.50 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=37.5
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++| ++++|++|..+++++++|.+.+|+++.|+ .||+|++.+.
T Consensus 138 GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~Ad-aVVLATG~~s 180 (637)
T 2zxi_A 138 NLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTK-AVVVTTGTFL 180 (637)
T ss_dssp TEEE-EESCEEEEEESSSBEEEEEETTSCEEECS-EEEECCTTCB
T ss_pred CCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeC-EEEEccCCCc
Confidence 7888 68899999988777778999999899998 7999999864
No 96
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.88 E-value=3.7e-09 Score=99.57 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=36.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC----CCCcce
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD----AVGGRV 87 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~----~~GG~~ 87 (445)
.+.++||+|||||++||+||+.|+++|++|+|+|+++ .+||.+
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~ 65 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQL 65 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGG
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccc
Confidence 3456899999999999999999999999999999954 566543
No 97
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.88 E-value=1.3e-08 Score=101.09 Aligned_cols=41 Identities=32% Similarity=0.404 Sum_probs=37.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
....+||+|||||++||++|..|++.|++|+|+|+++.+|+
T Consensus 89 ~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~ 129 (497)
T 2bry_A 89 ACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR 129 (497)
T ss_dssp TTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC
T ss_pred ccCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC
Confidence 34568999999999999999999999999999999988764
No 98
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.88 E-value=1.1e-08 Score=104.56 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=36.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
.+||+|||||++||+||+.|+++|.+|+|+||....+|.+
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s 44 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS 44 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 5899999999999999999999999999999988765543
No 99
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=98.87 E-value=5.4e-09 Score=102.66 Aligned_cols=42 Identities=29% Similarity=0.456 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||++||++|..|++.|. +|+|||+++.+||.+.
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~ 48 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN 48 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeec
Confidence 46899999999999999999999999 9999999999998654
No 100
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.86 E-value=1.9e-08 Score=102.01 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=36.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
..+||+|||||++||+||+.|+++|.+|+|+||....||.
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~ 56 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSH 56 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 4589999999999999999999999999999998776654
No 101
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.86 E-value=3.6e-09 Score=106.42 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=37.2
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++| ++++|+.|..+++++++|.+.+|.+++|+ .||+|++.+.
T Consensus 139 GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad-~VVLATGt~s 181 (651)
T 3ces_A 139 NLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAK-AVVLTVGTFL 181 (651)
T ss_dssp TEEE-EECCEEEEEESSSBEEEEEETTSEEEEEE-EEEECCSTTT
T ss_pred CCEE-EEEEEEEEEecCCEEEEEEECCCCEEECC-EEEEcCCCCc
Confidence 7888 67899999988777778999999889998 7999999864
No 102
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.86 E-value=1.2e-08 Score=103.42 Aligned_cols=40 Identities=38% Similarity=0.607 Sum_probs=37.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ------GRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~------G~~V~vlE~~~~~GG~~ 87 (445)
.+||+|||||++||++|+.|++. |.+|+|+||.+.+|+..
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 80 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT 80 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcc
Confidence 58999999999999999999999 99999999999888753
No 103
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.85 E-value=1.4e-08 Score=100.37 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=40.7
Q ss_pred cHHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 249 QIPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 249 ~l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
.+.+.+.+.+. |++|+++++|++|+.++++ +.|.+.+|+++.+| .||+|++..
T Consensus 203 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~aD-~Vv~a~G~~ 257 (472)
T 3iwa_A 203 SLSQMLRHDLEKNDVVVHTGEKVVRLEGENGK-VARVITDKRTLDAD-LVILAAGVS 257 (472)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEESSSB-EEEEEESSCEEECS-EEEECSCEE
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEccCCe-EEEEEeCCCEEEcC-EEEECCCCC
Confidence 34444444432 9999999999999886554 55888899899998 799999874
No 104
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.84 E-value=2.7e-09 Score=105.07 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~ 41 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN 41 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 3589999999999999999999999999999998764
No 105
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.84 E-value=2.4e-08 Score=92.36 Aligned_cols=41 Identities=34% Similarity=0.491 Sum_probs=37.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||+.|+++ |++|+|+|+++.+||.+
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~ 106 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS 106 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence 347999999999999999999998 99999999999998744
No 106
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=98.82 E-value=1.7e-09 Score=104.24 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=37.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
|+.|||+|||||++||++|+.|+++|++|+|+||++.+|..
T Consensus 2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~ 42 (397)
T 3oz2_A 2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSP 42 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC
Confidence 35699999999999999999999999999999999887753
No 107
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.81 E-value=1.5e-08 Score=99.94 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=35.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-----CCEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQG-----RPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G-----~~V~vlE~~~~~G 84 (445)
..+||+|||||++||++|..|++.| .+|+|||+++.+|
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g 71 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR 71 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence 4579999999999999999999999 9999999999887
No 108
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.77 E-value=5e-08 Score=93.73 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=40.8
Q ss_pred HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
+.+.+.+.++ |++|+++++|++|+.++++ +.|++.+|+++.+| .||+|++...
T Consensus 189 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d-~vv~a~G~~p 243 (384)
T 2v3a_A 189 AAKAVQAGLEGLGVRFHLGPVLASLKKAGEG-LEAHLSDGEVIPCD-LVVSAVGLRP 243 (384)
T ss_dssp HHHHHHHHHHTTTCEEEESCCEEEEEEETTE-EEEEETTSCEEEES-EEEECSCEEE
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEecCCE-EEEEECCCCEEECC-EEEECcCCCc
Confidence 3344444332 9999999999999876543 67888899889998 7999998753
No 109
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.76 E-value=2.8e-08 Score=99.92 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=36.9
Q ss_pred CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhHH
Q 042352 260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~~ 305 (445)
|++++.+ +|++|..++++ ++.|++.+|++++|+ .||.|++.+..
T Consensus 179 gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad-~vV~A~G~~s~ 223 (538)
T 2aqj_A 179 GVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEAD-LFIDCSGMRGL 223 (538)
T ss_dssp TCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCS-EEEECCGGGCC
T ss_pred CCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeC-EEEECCCCchh
Confidence 8999999 89999886554 467888889889998 79999998753
No 110
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.75 E-value=1.2e-08 Score=102.71 Aligned_cols=40 Identities=35% Similarity=0.401 Sum_probs=35.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD-AVGG 85 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~-~~GG 85 (445)
...+||+|||||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus 19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~ 59 (641)
T 3cp8_A 19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR 59 (641)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence 346999999999999999999999999999999975 4554
No 111
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=98.74 E-value=4.4e-09 Score=98.75 Aligned_cols=42 Identities=33% Similarity=0.460 Sum_probs=38.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHS--QGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~--~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||++||+||++|++ .|++|+|+|+++.+||.+.
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~ 107 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence 35899999999999999999985 4999999999999999875
No 112
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.74 E-value=1.2e-07 Score=96.43 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=35.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG 84 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G 84 (445)
+.++||+|||||++||+||..|++. |++|+|+|+++.+|
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~ 74 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS 74 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence 4467999999999999999999998 89999999998876
No 113
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.73 E-value=4.4e-08 Score=83.34 Aligned_cols=33 Identities=36% Similarity=0.511 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+||+|||||++|+.+|..|++.|.+|+|+|+++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~ 34 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR 34 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 699999999999999999999999999999976
No 114
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.73 E-value=3.5e-08 Score=91.82 Aligned_cols=38 Identities=34% Similarity=0.479 Sum_probs=34.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcce
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRV 87 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~ 87 (445)
+||+|||||++||+||..|++.|+ +|+|+|++ .+||.+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~ 40 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQI 40 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGG
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccc
Confidence 699999999999999999999999 99999994 667654
No 115
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.72 E-value=5.2e-08 Score=97.38 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=37.1
Q ss_pred CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhHH
Q 042352 260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~~ 305 (445)
|++++.+ +|++|..++++ ++.|++.+|++++|+ .||.|++.+..
T Consensus 187 gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad-~vV~A~G~~S~ 231 (511)
T 2weu_A 187 GVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGD-LFVDCTGFRGL 231 (511)
T ss_dssp TCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECS-EEEECCGGGCC
T ss_pred CCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcC-EEEECCCcchH
Confidence 9999999 99999986543 467888899889998 79999999753
No 116
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.68 E-value=1.6e-07 Score=94.20 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||+.|++ |.+|+|+||.+..||..
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s 46 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST 46 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence 35899999999999999999999 99999999998877643
No 117
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=98.67 E-value=2.1e-08 Score=103.78 Aligned_cols=71 Identities=35% Similarity=0.397 Sum_probs=56.2
Q ss_pred cCCCCccccccccCCCCccc-ccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 19 SKPHRFTFNIQASSSSSSKQ-LSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.++..|..|++...-..... +....+....+||+|||||++||+||+.|+++|++|+|+|+++.+||.+..
T Consensus 361 ~~~~~C~vnp~~g~e~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~ 432 (690)
T 3k30_A 361 MSPIRCTQNPSMGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ 432 (690)
T ss_dssp TSCCCCSSCTTTTTTTTTCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred CCcccCCcCcccCcccccccCccccCcccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence 56889999987665543221 112234456789999999999999999999999999999999999998754
No 118
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.67 E-value=1.9e-07 Score=91.13 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=40.4
Q ss_pred HHHHHHhcCC--CCcEEeCceeeEEEe--cCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 250 IPNQIASKLP--FESILLNTRVLSIDF--DEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 250 l~~~l~~~l~--g~~i~~n~~V~~I~~--~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
+.+.+.+.++ |++++++++|++|+. +++++..|++.+|+++.+| .||+|++..
T Consensus 193 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D-~Vv~a~G~~ 249 (431)
T 1q1r_A 193 VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPAD-LVIAGIGLI 249 (431)
T ss_dssp HHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECS-EEEECCCEE
T ss_pred HHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcC-EEEECCCCC
Confidence 3344444332 999999999999987 4455557889999889998 799999864
No 119
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=98.66 E-value=1.8e-07 Score=94.94 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGR 86 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~ 86 (445)
.+||+|||||++||+||+.|+++| .+|+|+||....+|.
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~ 45 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH 45 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence 479999999999999999999999 999999998776653
No 120
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=98.66 E-value=7.9e-08 Score=94.82 Aligned_cols=36 Identities=33% Similarity=0.648 Sum_probs=33.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGR 86 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~ 86 (445)
||+|||||++||+||+.|+++|.+|+|+||. ..||.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~ 36 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS 36 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence 7999999999999999999999999999998 55654
No 121
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.65 E-value=2.4e-07 Score=94.79 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHH---H-CCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLH---S-QGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~---~-~G~~V~vlE~~~~~ 83 (445)
..+||+|||||++||+||+.|+ + +|.+|+|+||....
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~ 61 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE 61 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence 3589999999999999999999 6 89999999998753
No 122
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.65 E-value=3.7e-08 Score=96.84 Aligned_cols=36 Identities=28% Similarity=0.533 Sum_probs=34.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G 84 (445)
+||+|||||++||+||..|++. |++|+|+|+++.+|
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g 40 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG 40 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence 5999999999999999999998 89999999999887
No 123
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=98.64 E-value=1.9e-08 Score=93.66 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=37.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+|||+|||||++||+||.+|++.|++|+|+|+ +.+||.+.
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~ 45 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMA 45 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeee
Confidence 59999999999999999999999999999998 56888774
No 124
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.63 E-value=4.8e-07 Score=87.63 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=37.3
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++|+++++|++|+.++ ++..|++.+|+++.+| .||+|++..
T Consensus 199 GV~i~~~~~v~~i~~~~-~~~~v~~~dg~~i~aD-~Vv~a~G~~ 240 (410)
T 3ef6_A 199 GVQVELGTGVVGFSGEG-QLEQVMASDGRSFVAD-SALICVGAE 240 (410)
T ss_dssp TCEEECSCCEEEEECSS-SCCEEEETTSCEEECS-EEEECSCEE
T ss_pred CCEEEeCCEEEEEeccC-cEEEEEECCCCEEEcC-EEEEeeCCe
Confidence 99999999999998765 5578999999999998 799999874
No 125
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=98.63 E-value=2e-08 Score=93.53 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=33.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
|.+.|||+|||||++||+||.+|+++|++|+|+|+..
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~ 37 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM 37 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 3456999999999999999999999999999999975
No 126
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=98.62 E-value=1.6e-07 Score=94.44 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=39.8
Q ss_pred CCcEEeCceeeEEEec----CCCcCeEEeC--CCc--eEEeccEEEEcCChhHHhhhc
Q 042352 260 FESILLNTRVLSIDFD----EQNMPNVRLA--NGE--TLKSEIGVILAVEEPEADKLL 309 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~----~~~~~~V~~~--~g~--~i~a~~~VV~a~~~~~~~~ll 309 (445)
+.+|++++.|++|..+ ++++++|++. +|+ +++|++.||++++.-...+||
T Consensus 241 NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL 298 (583)
T 3qvp_A 241 NLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL 298 (583)
T ss_dssp TEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHH
T ss_pred CcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHH
Confidence 8999999999999987 4557888875 564 477876799999997766544
No 127
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.61 E-value=2e-08 Score=102.20 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=37.8
Q ss_pred CCCccccccccccccccccCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 1 MPLSLSSSSLLFPSFTINSKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
||+|+++-...|..-....++-+.......... ......+..|+..+||+|||||++|++||+.|+++|++|+|+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~ 78 (623)
T 3pl8_A 1 MSTSSSDPFFNFAKSSFRSAAAQKASASSLPPL--PGPDKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIG 78 (623)
T ss_dssp -----------------------------------------------CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCCCCcccccccccccCccccchhccCCCC--CCCCcccccccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEecc
Confidence 778777766655555554444443331111100 000111223345689999999999999999999999999999999
Q ss_pred CCCCcce
Q 042352 81 DAVGGRV 87 (445)
Q Consensus 81 ~~~GG~~ 87 (445)
+..||.+
T Consensus 79 ~~~gg~~ 85 (623)
T 3pl8_A 79 EIDSGLK 85 (623)
T ss_dssp CCCSSSS
T ss_pred CCCCCcc
Confidence 9998844
No 128
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.58 E-value=3.6e-07 Score=92.43 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=33.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G 84 (445)
+||+|||||++||+||+.|++. |++|+|+|+++..|
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~ 39 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS 39 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence 5899999999999999999998 88999999998876
No 129
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=98.56 E-value=3.6e-08 Score=97.98 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=38.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+|.++||+|||||++||+||..|++.|++|+|+|+++.+||.|.
T Consensus 22 ~m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~ 65 (491)
T 3urh_A 22 SMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCL 65 (491)
T ss_dssp ----CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred hcccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 34569999999999999999999999999999999999999754
No 130
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=98.54 E-value=6.4e-08 Score=92.23 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=35.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..++||+|||||++|+++|+.|+++|++|+|+|++...+|
T Consensus 4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g 43 (363)
T 1c0p_A 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43 (363)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence 3568999999999999999999999999999999875443
No 131
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.53 E-value=3.8e-07 Score=87.44 Aligned_cols=39 Identities=18% Similarity=0.433 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.++.+|+|||||++|++||..|.+.+.+|+|+|+++..+
T Consensus 7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~ 45 (385)
T 3klj_A 7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP 45 (385)
T ss_dssp -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC
T ss_pred cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence 356789999999999999999977799999999987643
No 132
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.51 E-value=6.6e-08 Score=90.30 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=38.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
|+..+||+|||||++|++||+.|++.|++|+|+|+ ..+||.+..
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~ 56 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE 56 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence 44568999999999999999999999999999999 567887653
No 133
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=98.49 E-value=3e-07 Score=91.36 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=32.4
Q ss_pred cCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 44 KLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
+..+.+||||||||++||++|+.|.+.|...+++|+.+..|+
T Consensus 35 p~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~ 76 (501)
T 4b63_A 35 PQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQ 76 (501)
T ss_dssp CTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CC
T ss_pred CCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCC
Confidence 344568999999999999999999998887777777776665
No 134
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=98.48 E-value=5.3e-08 Score=96.07 Aligned_cols=42 Identities=33% Similarity=0.443 Sum_probs=39.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~ 44 (466)
T 3l8k_A 3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL 44 (466)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence 358999999999999999999999999999999999999865
No 135
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=98.47 E-value=2e-07 Score=93.76 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=39.3
Q ss_pred CCcEEeCceeeEEEec--CCCcCeEEeC--CCc--eEEeccEEEEcCChhHHhhhc
Q 042352 260 FESILLNTRVLSIDFD--EQNMPNVRLA--NGE--TLKSEIGVILAVEEPEADKLL 309 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~--~~~~~~V~~~--~g~--~i~a~~~VV~a~~~~~~~~ll 309 (445)
+.+|++++.|++|..+ ++++++|++. +|+ +++|++.||++++.....+||
T Consensus 220 Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL 275 (577)
T 3q9t_A 220 NITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLL 275 (577)
T ss_dssp TEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred CeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHH
Confidence 8899999999999988 5567788875 364 477865799999997765543
No 136
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=98.46 E-value=2.1e-07 Score=95.94 Aligned_cols=66 Identities=27% Similarity=0.377 Sum_probs=52.8
Q ss_pred cCCCCccccccccCCCCcccccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 19 SKPHRFTFNIQASSSSSSKQLSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.+++.|..|+...+-.... ..+....+||+|||||++|++||..|+++|++|+|+|+++.+||...
T Consensus 348 ~~~~~C~~np~~~~e~~~~----~~~~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~ 413 (671)
T 1ps9_A 348 GKVTSCLVNPRACHETKMP----ILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN 413 (671)
T ss_dssp TCCCCCSSCTTTTCTTTSC----CCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred CCceEEEeCcccccccccC----CCCCCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence 4678899988665543322 11234568999999999999999999999999999999999999764
No 137
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=98.43 E-value=1.7e-07 Score=97.54 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=53.1
Q ss_pred cCCCCccccccccCCCCccc-ccccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 19 SKPHRFTFNIQASSSSSSKQ-LSLNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
.++..|..|+...+-..... +....+....+||+|||||++||+||+.|+++|++|+|+|+++.+||.+..
T Consensus 359 ~~~~~C~~n~~~g~e~~~~~~~~~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~ 430 (729)
T 1o94_A 359 GPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ 430 (729)
T ss_dssp SSCCCCSSCTTTTTHHHHCCCTTCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred CCceeeccCccccccccccccccccccccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence 56888999876543211010 011122345689999999999999999999999999999999999998754
No 138
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.42 E-value=1.4e-07 Score=88.37 Aligned_cols=42 Identities=31% Similarity=0.432 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~s 89 (445)
..+||+|||||++||+||..|++.|++|+|+|++ .+||.+..
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~ 48 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW 48 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence 4589999999999999999999999999999998 78887754
No 139
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=98.42 E-value=2.1e-07 Score=91.13 Aligned_cols=43 Identities=42% Similarity=0.499 Sum_probs=39.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
...+||+|||||++||+||+.|++.|++|+|+|+++.+||...
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~ 162 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV 162 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence 3568999999999999999999999999999999999999753
No 140
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.4e-07 Score=93.41 Aligned_cols=45 Identities=38% Similarity=0.519 Sum_probs=37.8
Q ss_pred ccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 43 SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 43 ~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+.++.++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 6 ~~~~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~ 50 (479)
T 2hqm_A 6 STNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV 50 (479)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred cCccccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence 33445689999999999999999999999999999997 6888764
No 141
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.39 E-value=1.5e-07 Score=87.41 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEE-EecCCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVL-LEASDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~v-lE~~~~~GG~~~s 89 (445)
+++||+|||||++||+||..|+++|++|+| +|+ +.+||.+..
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~ 45 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS 45 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence 458999999999999999999999999999 999 778987643
No 142
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=98.38 E-value=2.3e-07 Score=91.76 Aligned_cols=41 Identities=37% Similarity=0.451 Sum_probs=37.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
+++||+|||||++||+||+.|++.|++|+|+|+++.+||+.
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~ 42 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence 46899999999999999999999999999999998666554
No 143
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.37 E-value=2.9e-07 Score=81.73 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=36.9
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhHH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPEA 305 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~~ 305 (445)
|++++ +++|++|..++++++.|.+.+|++++|+ .||+|++.+..
T Consensus 83 gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~-~VV~A~G~~s~ 126 (232)
T 2cul_A 83 PLHLF-QATATGLLLEGNRVVGVRTWEGPPARGE-KVVLAVGSFLG 126 (232)
T ss_dssp TEEEE-ECCEEEEEEETTEEEEEEETTSCCEECS-EEEECCTTCSS
T ss_pred CcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECC-EEEECCCCChh
Confidence 77888 6799999988766667888899889998 79999999653
No 144
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.37 E-value=2.1e-07 Score=91.93 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=38.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 42 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL 42 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence 47999999999999999999999999999999989999764
No 145
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.36 E-value=2.7e-07 Score=92.90 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
.+||+|||||++||++|+.|++.|.+|+|+||++.++.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~ 63 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTIT 63 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 47999999999999999999999999999999887653
No 146
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=98.36 E-value=2.8e-07 Score=92.07 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=38.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--------CCCccee
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD--------AVGGRVR 88 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~--------~~GG~~~ 88 (445)
++..+||+|||||++|++||..|++.|++|+|+|+++ .+||.|.
T Consensus 29 ~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~ 80 (519)
T 3qfa_A 29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCV 80 (519)
T ss_dssp SSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHH
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccC
Confidence 3456899999999999999999999999999999965 6788654
No 147
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=98.36 E-value=1.9e-07 Score=92.48 Aligned_cols=42 Identities=31% Similarity=0.451 Sum_probs=37.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+.++||+|||||++||+||..|++.|++|+|+|++ .+||.|.
T Consensus 18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~ 59 (478)
T 3dk9_A 18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCV 59 (478)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccc
Confidence 34699999999999999999999999999999975 7888753
No 148
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.36 E-value=1.7e-07 Score=92.77 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=39.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+.++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 46 (482)
T 1ojt_A 4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL 46 (482)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence 3468999999999999999999999999999999999998653
No 149
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=98.36 E-value=2.5e-07 Score=91.26 Aligned_cols=42 Identities=38% Similarity=0.520 Sum_probs=38.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+.++||+|||||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~ 43 (467)
T 1zk7_A 2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV 43 (467)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence 45689999999999999999999999999999998 7888754
No 150
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.35 E-value=1.5e-07 Score=93.25 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 45 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL 45 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence 458999999999999999999999999999999999998653
No 151
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=98.35 E-value=1.9e-06 Score=83.09 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=36.1
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++++++++|+.++.+++. ..|++.+|+++.+| .|++++|..
T Consensus 216 gi~v~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D-~vi~~~g~~ 257 (401)
T 3vrd_B 216 LIEWHPGPDAAVVKTDTEA-MTVETSFGETFKAA-VINLIPPQR 257 (401)
T ss_dssp SEEEECTTTTCEEEEETTT-TEEEETTSCEEECS-EEEECCCEE
T ss_pred CcEEEeCceEEEEEecccc-eEEEcCCCcEEEee-EEEEecCcC
Confidence 8999999999999887654 77999999999998 788887753
No 152
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.35 E-value=2.4e-07 Score=88.30 Aligned_cols=41 Identities=34% Similarity=0.596 Sum_probs=37.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~~ 88 (445)
+++||+|||||++|+++|+.|++.|+ +|+|+|+++ +||.+.
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~ 44 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFK 44 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHH
T ss_pred ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccc
Confidence 35799999999999999999999999 999999998 888653
No 153
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.35 E-value=4.9e-07 Score=92.63 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=37.4
Q ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCCC
Q 042352 42 NSKLERKDRVIVIGAGLAGLAAATRLHS-QGRPFVLLEASDAVG 84 (445)
Q Consensus 42 ~~~~~~~~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE~~~~~G 84 (445)
+..++..+||+|||||++||++|+.|++ .|.+|+|+||++.++
T Consensus 26 m~~~~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~ 69 (639)
T 2dkh_A 26 TEAVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM 69 (639)
T ss_dssp CSSCCSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred cCCCCCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 4444557899999999999999999999 999999999987654
No 154
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=98.34 E-value=2.4e-07 Score=87.17 Aligned_cols=43 Identities=30% Similarity=0.384 Sum_probs=38.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
++..+||+|||||++|+++|+.|++.|++|+|+|+. .+||.+.
T Consensus 11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~ 53 (335)
T 2a87_A 11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALM 53 (335)
T ss_dssp CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGG
T ss_pred cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 445689999999999999999999999999999975 6787654
No 155
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.34 E-value=2.7e-07 Score=90.92 Aligned_cols=41 Identities=34% Similarity=0.564 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+++||+|||||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~ 43 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV 43 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence 4689999999999999999999999999999997 7888764
No 156
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.33 E-value=2.2e-07 Score=91.84 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~ 46 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL 46 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence 358999999999999999999999999999999999999753
No 157
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.33 E-value=3.6e-07 Score=90.21 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~ 46 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL 46 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence 468999999999999999999999999999999989999764
No 158
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.32 E-value=2.5e-07 Score=90.83 Aligned_cols=41 Identities=32% Similarity=0.521 Sum_probs=37.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.++||+|||||++|++||+.|++.|++|+|+|++ .+||.|.
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~ 43 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV 43 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence 4589999999999999999999999999999997 7888763
No 159
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=98.31 E-value=2.4e-07 Score=87.74 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=33.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC------CCEEEEecCCCCCc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG------RPFVLLEASDAVGG 85 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G------~~V~vlE~~~~~GG 85 (445)
+||+|||||++||++|+.|+++| .+|+|+|++...+|
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~ 43 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT 43 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence 38999999999999999999998 89999999875444
No 160
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.31 E-value=2.5e-07 Score=86.89 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec----CCCCCcceee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA----SDAVGGRVRT 89 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~----~~~~GG~~~s 89 (445)
..+||+|||||++|+++|+.|++.|++|+|+|+ ...+||.+..
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 53 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT 53 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence 357999999999999999999999999999999 6777887643
No 161
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.30 E-value=2.4e-07 Score=86.43 Aligned_cols=41 Identities=24% Similarity=0.453 Sum_probs=36.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+.+||+|||||++||+||+.|++.|++|+|+|+ ..+||.+.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~ 44 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT 44 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceEe
Confidence 458999999999999999999999999999997 47788654
No 162
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.30 E-value=3.7e-07 Score=89.72 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=37.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 41 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL 41 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 7999999999999999999999999999999989999754
No 163
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.29 E-value=5.3e-07 Score=82.97 Aligned_cols=38 Identities=34% Similarity=0.493 Sum_probs=34.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
++||+|||||++||+||..|+++|++|+|+|+++..|+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~ 39 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNR 39 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGG
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccc
Confidence 37999999999999999999999999999999765543
No 164
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=98.28 E-value=3.3e-07 Score=90.94 Aligned_cols=39 Identities=31% Similarity=0.442 Sum_probs=36.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
++||+|||||++|++||..|++.|++|+|+|++ .+||.|
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc 46 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTC 46 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcc
Confidence 489999999999999999999999999999996 488876
No 165
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=98.28 E-value=5.1e-07 Score=89.46 Aligned_cols=43 Identities=35% Similarity=0.446 Sum_probs=36.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC---------CCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD---------AVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~---------~~GG~~~ 88 (445)
+..+||+|||||++|++||..|++.|++|+|+|+.. .+||.|.
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~ 58 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCV 58 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeec
Confidence 356999999999999999999999999999999521 3777664
No 166
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=98.28 E-value=3.4e-06 Score=84.65 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=39.6
Q ss_pred CCcEEeCceeeEEEec----C-CCcCeEEeCC--C-c--eEEeccEEEEcCChhHHhhhc
Q 042352 260 FESILLNTRVLSIDFD----E-QNMPNVRLAN--G-E--TLKSEIGVILAVEEPEADKLL 309 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~----~-~~~~~V~~~~--g-~--~i~a~~~VV~a~~~~~~~~ll 309 (445)
+.+|++++.|++|..+ + +++++|++.+ | + +++|++.||++++.-...+||
T Consensus 222 NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL 281 (566)
T 3fim_B 222 NLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILL 281 (566)
T ss_dssp TEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHH
T ss_pred CeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHH
Confidence 8899999999999987 3 4578888764 4 3 478855799999998776654
No 167
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.27 E-value=2.8e-07 Score=91.52 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=37.4
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++|+++++|++|+.++++.+.|++.+|+++.+| .||+|++..
T Consensus 249 GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D-~vv~a~G~~ 291 (495)
T 2wpf_A 249 GIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVD-VVMMAIGRI 291 (495)
T ss_dssp TCEEEESCCEEEEEECTTSCEEEEETTSCEEEES-EEEECSCEE
T ss_pred CCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcC-EEEECCCCc
Confidence 9999999999999987655578888999889998 799999864
No 168
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=98.27 E-value=4.8e-07 Score=89.77 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec--------CCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEA--------SDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~--------~~~~GG~~~ 88 (445)
.++||+|||||++||+||..|++.|++|+|+|+ ...+||.|.
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~ 54 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV 54 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeec
Confidence 458999999999999999999999999999998 567888653
No 169
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=98.25 E-value=1.4e-05 Score=80.11 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=39.5
Q ss_pred CCcEEeCceeeEEEecC-CCcCeEEeCC---Cc--eEEeccEEEEcCChhHHhhhc
Q 042352 260 FESILLNTRVLSIDFDE-QNMPNVRLAN---GE--TLKSEIGVILAVEEPEADKLL 309 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~-~~~~~V~~~~---g~--~i~a~~~VV~a~~~~~~~~ll 309 (445)
|++|++++.|++|..++ +++++|++.+ |+ +++|++.||+|++.....+|+
T Consensus 223 ~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL 278 (546)
T 2jbv_A 223 NFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLL 278 (546)
T ss_dssp TEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred CcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhh
Confidence 89999999999999987 5677888754 54 588875699999996555543
No 170
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.25 E-value=5.2e-07 Score=89.49 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=37.4
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++|+++++|++|+.++++.+.|++.+|+++.+| .||+|++..
T Consensus 245 GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D-~vv~a~G~~ 287 (490)
T 1fec_A 245 GINVRTHENPAKVTKNADGTRHVVFESGAEADYD-VVMLAIGRV 287 (490)
T ss_dssp TEEEEETCCEEEEEECTTSCEEEEETTSCEEEES-EEEECSCEE
T ss_pred CCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcC-EEEEccCCC
Confidence 9999999999999987655578888899889998 799999874
No 171
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=98.24 E-value=7.7e-07 Score=87.56 Aligned_cols=41 Identities=29% Similarity=0.536 Sum_probs=38.4
Q ss_pred CcEEEECCCHHHHHHHHHHHH---CCCC---EEEEecCCCCCcceee
Q 042352 49 DRVIVIGAGLAGLAAATRLHS---QGRP---FVLLEASDAVGGRVRT 89 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~---~G~~---V~vlE~~~~~GG~~~s 89 (445)
+||+|||||++||+||..|++ .|++ |+|+|+++.+||.+..
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~ 49 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY 49 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence 699999999999999999999 9999 9999999999997754
No 172
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=98.24 E-value=4.3e-07 Score=89.53 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=36.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
++||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~ 41 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVC 41 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcc
Confidence 479999999999999999999999999999998 778765
No 173
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.23 E-value=4.9e-07 Score=88.88 Aligned_cols=41 Identities=37% Similarity=0.593 Sum_probs=37.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.++||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~ 44 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL 44 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence 348999999999999999999999999999999 78998864
No 174
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=98.21 E-value=7.1e-07 Score=87.00 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
++||+|||||++||++|+.|+++|++|+|+|+..
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3799999999999999999999999999999976
No 175
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.20 E-value=6.3e-07 Score=88.25 Aligned_cols=39 Identities=38% Similarity=0.543 Sum_probs=36.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
++||+|||||++|++||..|++.|++|+|+|+++ +||.+
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~ 44 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVC 44 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCC
Confidence 5899999999999999999999999999999987 88865
No 176
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=98.20 E-value=1e-06 Score=84.50 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=33.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAV 83 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~ 83 (445)
.||+|||||++||++|..|+++ |++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 3899999999999999999999 9999999998776
No 177
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.19 E-value=5.3e-07 Score=89.71 Aligned_cols=40 Identities=23% Similarity=0.480 Sum_probs=37.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ---GRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~---G~~V~vlE~~~~~GG~~~ 88 (445)
++||+|||||++|++||+.|++. |++|+|+|+++ +||.+.
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~ 44 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAV 44 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence 47999999999999999999999 99999999988 898754
No 178
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.18 E-value=8.8e-07 Score=87.03 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=36.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
++||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~ 41 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC 41 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcC
Confidence 479999999999999999999999999999998 788875
No 179
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.18 E-value=1e-06 Score=87.59 Aligned_cols=40 Identities=38% Similarity=0.529 Sum_probs=36.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
++||+|||||++|++||..|++.|++|+|+|++ ..||.|.
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~ 41 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV 41 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccc
Confidence 479999999999999999999999999999998 5788764
No 180
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.16 E-value=1.5e-06 Score=87.40 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=36.6
Q ss_pred CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++++++ +|++|..++++ ++.|++.+|++++|+ .||.|++.+.
T Consensus 209 Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad-~vI~A~G~~S 252 (550)
T 2e4g_A 209 GVRHVED-RVEHVQRDANGNIESVRTATGRVFDAD-LFVDCSGFRG 252 (550)
T ss_dssp CCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECS-EEEECCGGGC
T ss_pred CcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECC-EEEECCCCch
Confidence 8999999 99999886543 467888899889998 7999999875
No 181
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=98.15 E-value=2e-06 Score=80.63 Aligned_cols=39 Identities=41% Similarity=0.453 Sum_probs=34.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcce
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRV 87 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~ 87 (445)
+||+|||||++|+.||+.|+++|++|+|+|++...+..+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~ 40 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA 40 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence 699999999999999999999999999999987555443
No 182
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.14 E-value=2e-06 Score=86.07 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=35.9
Q ss_pred CCcEEeCceeeEEEecCCC-cCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQN-MPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++++.+ +|++|+.++++ ++.|++.+|++++|+ .||.|++.+.
T Consensus 190 Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad-~vV~AdG~~S 233 (526)
T 2pyx_A 190 GVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQ-LFIDCTGAKS 233 (526)
T ss_dssp CCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECS-EEEECSGGGC
T ss_pred CCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcC-EEEECCCcch
Confidence 8999999 69999887554 357888888789998 7999999975
No 183
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.11 E-value=1.8e-06 Score=80.10 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=35.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
++||+|||||++||++|..|++.|++|+|+|+ ..||.+.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~ 39 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL 39 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence 37999999999999999999999999999985 5788764
No 184
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=98.11 E-value=1.7e-06 Score=88.90 Aligned_cols=59 Identities=22% Similarity=0.171 Sum_probs=44.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCCCEEEEecCCCCCcceeeeccCCeeecccccchhccChhHHHhhcccCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHS-----QGRPFVLLEASDAVGGRVRTDSVDGFLLDRGFQIFITAYPEAQKLLDYNALN 121 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~-----~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~ 121 (445)
.+||+|||||++||++|..|++ .|.+|+|+||.+.... .|.. ....+...++++.+|+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~-------------~gra--~~l~~~tle~l~~lGl~ 71 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY-------------NGQA--DGLQCRTLESLKNLGLA 71 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC-------------SCSC--CEECHHHHHHHHTTTCH
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCC-------------CCce--eEEChHHHHHHHHCCCH
Confidence 4799999999999999999999 9999999999754321 0000 02245677778877763
No 185
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=98.09 E-value=1.4e-06 Score=85.43 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=38.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-C------CCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHS-Q------GRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~-~------G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||++|++||..|++ . |++|+|+|+.+.+||.+.
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~ 50 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR 50 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence 45799999999999999999999 7 999999999999998764
No 186
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.05 E-value=1.1e-06 Score=87.25 Aligned_cols=40 Identities=33% Similarity=0.464 Sum_probs=37.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
.+||+|||||++||+||+.|++. ++|+|+|+++.+||...
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~ 147 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW 147 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence 47999999999999999999999 99999999999999765
No 187
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=98.05 E-value=2.7e-06 Score=83.37 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGGR 86 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG~ 86 (445)
+++||+|||||++||+||+.|++. |++|+|+|+++..++.
T Consensus 2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~ 43 (449)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA 43 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--
T ss_pred CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccC
Confidence 357999999999999999999998 8899999999887653
No 188
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=98.04 E-value=2.8e-06 Score=90.91 Aligned_cols=42 Identities=38% Similarity=0.580 Sum_probs=39.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
..+||+|||||++||+||..|++.|++|+|+|+++.+||++.
T Consensus 127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~ 168 (965)
T 2gag_A 127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL 168 (965)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence 358999999999999999999999999999999999999887
No 189
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=98.01 E-value=4.1e-06 Score=90.30 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcce
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASDAVGGRV 87 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~~~GG~~ 87 (445)
..+||+|||||++||+||..|++.|+ +|+|+|+++.+||..
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~ 227 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 227 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence 36899999999999999999999999 799999999999975
No 190
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.01 E-value=3.5e-06 Score=86.03 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ------GRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~------G~~V~vlE~~~~~GG 85 (445)
.+||+|||||++||+||+.|+++ |.+|+|+||....++
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s 65 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS 65 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC
Confidence 58999999999999999999997 999999999876443
No 191
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.01 E-value=4e-06 Score=83.69 Aligned_cols=41 Identities=32% Similarity=0.422 Sum_probs=36.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccee
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGGRVR 88 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 88 (445)
+..+||+|||||++|++||..|+++|++|+|+|+ .+||.+.
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~ 250 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL 250 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence 3568999999999999999999999999999996 5788764
No 192
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=97.99 E-value=3.8e-06 Score=83.80 Aligned_cols=52 Identities=6% Similarity=-0.057 Sum_probs=40.7
Q ss_pred HHHHHHhcCC--CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 250 IPNQIASKLP--FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 250 l~~~l~~~l~--g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
+.+.+.+.++ |+++++++.|++++..+++ +.|.+.+++++.+| .|++|++-.
T Consensus 265 i~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~-~~v~~~~~~~~~~D-~vLvAvGR~ 318 (542)
T 4b1b_A 265 CAVKVKLYMEEQGVMFKNGILPKKLTKMDDK-ILVEFSDKTSELYD-TVLYAIGRK 318 (542)
T ss_dssp HHHHHHHHHHHTTCEEEETCCEEEEEEETTE-EEEEETTSCEEEES-EEEECSCEE
T ss_pred HHHHHHHHHHhhcceeecceEEEEEEecCCe-EEEEEcCCCeEEEE-EEEEccccc
Confidence 4444444443 9999999999999988765 67888888888998 799999764
No 193
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=97.98 E-value=4.1e-06 Score=85.27 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=32.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...+||+|||||++||+||..|++.|++|+|+|+.
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~ 139 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV 139 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence 45689999999999999999999999999999973
No 194
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=97.97 E-value=3.9e-06 Score=81.77 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=35.0
Q ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCcc
Q 042352 49 DRVIVIGAGLAGLAAATRLHS--QGRPFVLLEASDAVGGR 86 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~--~G~~V~vlE~~~~~GG~ 86 (445)
+||+|||||++||+||+.|++ .|++|+|+|+++..++.
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~ 42 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT 42 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcC
Confidence 699999999999999999999 79999999999887653
No 195
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.96 E-value=6.2e-06 Score=79.70 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~~~G 84 (445)
..+||+|||||++|++||..|++.|+ +|+|+|+++.++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~ 45 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP 45 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence 46899999999999999999999998 599999987654
No 196
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=97.95 E-value=2.8e-05 Score=76.08 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=36.7
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++++++++|++|+.++++.+.|++.+|+++.+| .||+|++..
T Consensus 222 Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D-~vv~a~G~~ 264 (450)
T 1ges_A 222 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVD-CLIWAIGRE 264 (450)
T ss_dssp SCEEECSCCEEEEEECTTSCEEEEETTSCEEEES-EEEECSCEE
T ss_pred CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcC-EEEECCCCC
Confidence 8899999999999987655467888899889998 799999764
No 197
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=97.94 E-value=5.5e-06 Score=81.24 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=37.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCccee
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVGGRVR 88 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~GG~~~ 88 (445)
.+||+|||||++|++||..|++.| ++|+|+|+.+.+||...
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~ 48 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR 48 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence 479999999999999999999998 99999999999998653
No 198
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=97.93 E-value=3.8e-06 Score=81.22 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=33.8
Q ss_pred CcEEEECCCHHHHHHHHHHHH---CCCCEEEEecCCCCCc
Q 042352 49 DRVIVIGAGLAGLAAATRLHS---QGRPFVLLEASDAVGG 85 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~---~G~~V~vlE~~~~~GG 85 (445)
.||+|||||++||++|..|++ .|++|+|+|+++..++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~ 41 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYF 41 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCcee
Confidence 589999999999999999999 8999999999986544
No 199
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.89 E-value=9.5e-06 Score=80.40 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=34.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQG---RPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G---~~V~vlE~~~~~GG 85 (445)
++||+|||||++|++||..|++.| .+|+|+|+++.+|.
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~ 75 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISF 75 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSB
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCc
Confidence 589999999999999999999988 99999999887653
No 200
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=97.85 E-value=9.9e-06 Score=81.42 Aligned_cols=37 Identities=35% Similarity=0.562 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+|+||||||.+|+++|++|+++|++|+|||+....
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~ 42 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS 42 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 5689999999999999999999999999999998653
No 201
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=97.85 E-value=7.9e-06 Score=79.73 Aligned_cols=35 Identities=31% Similarity=0.610 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---CCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHS---QGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~---~G~~V~vlE~~~~ 82 (445)
+.||+|||||++|++||..|++ .|++|+|+|+++.
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~ 41 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY 41 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence 4799999999999999999999 8999999999874
No 202
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.85 E-value=8.1e-06 Score=80.93 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=36.2
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~ 303 (445)
|++++++++|++|+.+++. +.|++.+|+++.+| .||+|++..
T Consensus 240 GV~v~~~~~V~~i~~~~~~-~~v~l~dG~~i~aD-~Vv~a~G~~ 281 (493)
T 1m6i_A 240 GVKVMPNAIVQSVGVSSGK-LLIKLKDGRKVETD-HIVAAVGLE 281 (493)
T ss_dssp TCEEECSCCEEEEEEETTE-EEEEETTSCEEEES-EEEECCCEE
T ss_pred CCEEEeCCEEEEEEecCCe-EEEEECCCCEEECC-EEEECCCCC
Confidence 9999999999999876543 57888999999998 799999874
No 203
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.84 E-value=9.9e-06 Score=79.41 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=33.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG 85 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG 85 (445)
+||+|||||++|++||..|++. |++|+|+|+++.+|.
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~ 39 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF 39 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence 5899999999999999999998 999999999887653
No 204
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=97.82 E-value=9.7e-05 Score=72.20 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
...+++|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 184 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 184 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence 4579999999999999999999999999999987653
No 205
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=97.82 E-value=1.2e-05 Score=79.52 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~GG 85 (445)
++||+|||||++|++||..|++. |.+|+|+|+++..|+
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~ 75 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSY 75 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSB
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCC
Confidence 46999999999999999999996 899999999887753
No 206
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=97.79 E-value=1.3e-05 Score=78.34 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~~G 84 (445)
+||+|||||++|++||..|++. |++|+|+|+++..|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~ 38 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence 4899999999999999999998 99999999998776
No 207
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=97.78 E-value=0.00018 Score=70.46 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=36.1
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++|+++++|++|+.++++ +.|++.+|+++.+| .||+|++...
T Consensus 222 Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~~D-~vv~A~G~~p 264 (455)
T 2yqu_A 222 GLTIRTGVRVTAVVPEAKG-ARVELEGGEVLEAD-RVLVAVGRRP 264 (455)
T ss_dssp TCEEECSCCEEEEEEETTE-EEEEETTSCEEEES-EEEECSCEEE
T ss_pred CCEEEECCEEEEEEEeCCE-EEEEECCCeEEEcC-EEEECcCCCc
Confidence 8899999999999877654 66777788889998 7999998754
No 208
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=97.76 E-value=8.8e-05 Score=72.86 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 204 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI 204 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence 368999999999999999999999999999987654
No 209
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=97.73 E-value=9e-06 Score=81.36 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+|+||||||.+|+++|..|++ |.+|+|||+....+
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~ 61 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPT 61 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGG
T ss_pred CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcC
Confidence 45999999999999999999999 99999999976543
No 210
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=97.72 E-value=1.6e-05 Score=79.57 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=39.2
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCC---ceEEeccEEEEcCChhHHhhhc
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANG---ETLKSEIGVILAVEEPEADKLL 309 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g---~~i~a~~~VV~a~~~~~~~~ll 309 (445)
+.+|.+++.|++|..+++++++|.+.+. .++.|+ .||++++.-.+.+||
T Consensus 225 nl~v~~~~~v~~i~~~~~~a~gv~~~~~~~~~~~~a~-~VILsAGai~SP~LL 276 (526)
T 3t37_A 225 NLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAEVFAD-QIVLCAGALESPALL 276 (526)
T ss_dssp TEEEECSCEEEEEEEETTEEEEEEEEETTEEEEEEEE-EEEECSHHHHHHHHH
T ss_pred CeEEEeCCEEEEEEecCCeEEEEEEEecCceEEEeec-ceEEcccccCCcchh
Confidence 7799999999999999888777776533 247787 699999998776655
No 211
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=97.69 E-value=8.6e-05 Score=73.24 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 218 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 218 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence 468999999999999999999999999999987654
No 212
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.69 E-value=2.1e-05 Score=74.82 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
+..|++|||||++|++||..|++.| +|+|+|+++..
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~ 42 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP 42 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence 3479999999999999999999999 99999998764
No 213
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=97.68 E-value=0.00035 Score=69.11 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ---GRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~---G~~V~vlE~~~~~ 83 (445)
..+++|||||..|+-.|..|++. |.+|+|+|+.+++
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~ 229 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI 229 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence 36899999999999999999999 9999999987664
No 214
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=97.68 E-value=0.00067 Score=66.46 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~~ 82 (445)
..+|+|||||.+|+-+|..|++. |.+|+++++.+.
T Consensus 227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~ 263 (463)
T 3s5w_A 227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA 263 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 56899999999999999999999 899999998754
No 215
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=97.67 E-value=0.00033 Score=69.23 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ---GRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~---G~~V~vlE~~~~~G 84 (445)
..+++|||||..|+-.|..|++. |.+|+++|+.+++.
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l 226 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL 226 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc
Confidence 46899999999999999999999 99999999987643
No 216
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.67 E-value=0.00038 Score=69.02 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=37.0
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCce-EEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGET-LKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~-i~a~~~VV~a~~~~~ 304 (445)
|++++++++|++|+.++++.+.|++.+|++ +.+| .||+|++...
T Consensus 231 gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D-~vi~a~G~~p 275 (500)
T 1onf_A 231 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFD-HVIYCVGRSP 275 (500)
T ss_dssp TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEES-EEEECCCBCC
T ss_pred CCEEEECCEEEEEEEcCCceEEEEECCCcEEEECC-EEEECCCCCc
Confidence 899999999999987655446788889987 8998 7999998753
No 217
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00038 Score=68.57 Aligned_cols=43 Identities=2% Similarity=0.111 Sum_probs=35.7
Q ss_pred CCcEEeCceeeEEEecCCC-cCeEEeCCC-ceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQN-MPNVRLANG-ETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~-~~~V~~~~g-~~i~a~~~VV~a~~~~ 303 (445)
|++|+++++|++|+.++++ .+.|++.+| +++.+| .||+|++..
T Consensus 240 Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D-~vv~a~G~~ 284 (479)
T 2hqm_A 240 GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVD-ELIWTIGRK 284 (479)
T ss_dssp TCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEES-EEEECSCEE
T ss_pred CeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcC-EEEECCCCC
Confidence 8999999999999876544 467888899 789998 799999863
No 218
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=97.67 E-value=0.00032 Score=68.77 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCc-eEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGE-TLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~-~i~a~~~VV~a~~~~ 303 (445)
|++++++++|++|+.++++ +.|++.+|+ ++.+| .||+|++..
T Consensus 221 gv~i~~~~~v~~i~~~~~~-~~v~~~~G~~~i~~D-~vv~a~G~~ 263 (463)
T 2r9z_A 221 GIETHLEFAVAALERDAQG-TTLVAQDGTRLEGFD-SVIWAVGRA 263 (463)
T ss_dssp TCEEESSCCEEEEEEETTE-EEEEETTCCEEEEES-EEEECSCEE
T ss_pred CCEEEeCCEEEEEEEeCCe-EEEEEeCCcEEEEcC-EEEECCCCC
Confidence 8899999999999876554 678888998 89998 799998764
No 219
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=97.67 E-value=3e-05 Score=77.01 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+|++|||||++|+++|+.|++.|.+|+|+|+....+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 45899999999999999999999999999999987654
No 220
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=97.62 E-value=3.7e-05 Score=74.87 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~~G 84 (445)
++|+|||||++|++||..|++.| .+|+|+|+++..+
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~ 38 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 38 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence 47999999999999999999987 5799999987654
No 221
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=97.56 E-value=5.3e-05 Score=75.23 Aligned_cols=37 Identities=32% Similarity=0.515 Sum_probs=34.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...+|++|||||.+|+++|+.|++.|.+|+|+|+...
T Consensus 9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3569999999999999999999999999999999754
No 222
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.55 E-value=0.00087 Score=64.51 Aligned_cols=35 Identities=26% Similarity=0.540 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-+|..|++.|.+|+++|+.+.
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 179 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 179 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence 57899999999999999999999999999998764
No 223
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=97.52 E-value=0.00089 Score=66.32 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=36.8
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCceEEeccEEEEcCChhH
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGETLKSEIGVILAVEEPE 304 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~~i~a~~~VV~a~~~~~ 304 (445)
|++|+++++|++|+.++++ +.|++.+|+++.+| .||+|++...
T Consensus 237 GV~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~aD-~Vv~a~G~~p 279 (499)
T 1xdi_A 237 GVRLFKNARAASVTRTGAG-VLVTMTDGRTVEGS-HALMTIGSVP 279 (499)
T ss_dssp TCEEETTCCEEEEEECSSS-EEEEETTSCEEEES-EEEECCCEEE
T ss_pred CCEEEeCCEEEEEEEeCCE-EEEEECCCcEEEcC-EEEECCCCCc
Confidence 8999999999999987655 67778888889998 7999998764
No 224
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.51 E-value=0.00025 Score=69.41 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 205 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI 205 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence 468999999999999999999999999999987554
No 225
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=97.51 E-value=5e-05 Score=75.28 Aligned_cols=37 Identities=11% Similarity=0.328 Sum_probs=33.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.++++|+|||||.+|+++|..|++++++|+|+|++++
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~ 76 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY 76 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence 3467899999999999999999999999999999864
No 226
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=97.47 E-value=6.8e-05 Score=72.87 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~~~ 82 (445)
++|+|||||++|++||..|++.+ ++|+|+|+++.
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~ 38 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY 38 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence 47999999999999999999865 79999999865
No 227
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.46 E-value=0.0015 Score=64.54 Aligned_cols=36 Identities=33% Similarity=0.614 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...+|+|||||.+|+-.|..|++.|.+|+|+|+.+.
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 228 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT 228 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 357899999999999999999999999999998654
No 228
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=97.44 E-value=8.7e-05 Score=74.98 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHS-QGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE~~~~~ 83 (445)
..+|++|||||.+|+++|..|++ .|.+|+|+|+....
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 46999999999999999999999 79999999997553
No 229
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.42 E-value=0.00088 Score=65.44 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||+|.+|+-.|..|++.|.+|+++|+.+.
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 183 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER 183 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence 46899999999999999999999999999998654
No 230
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=97.40 E-value=0.0013 Score=64.76 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+++|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 213 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV 213 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence 368999999999999999999999999999987654
No 231
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=97.38 E-value=0.00071 Score=66.69 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 219 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 219 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence 46899999999999999999999999999997644
No 232
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.33 E-value=0.0018 Score=63.43 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 205 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR 205 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 46899999999999999999999999999998654
No 233
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=97.32 E-value=0.00067 Score=62.76 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 178 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 178 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence 34689999999999999999999999999998754
No 234
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=97.30 E-value=0.002 Score=63.24 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 208 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR 208 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc
Confidence 46899999999999999999999999999998654
No 235
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=97.16 E-value=0.0014 Score=61.00 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=35.4
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCC-----CceEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLAN-----GETLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~-----g~~i~a~~~VV~a~~~~ 303 (445)
|++++++++|++|+.+++++..|++.+ ++++.+| .||++++..
T Consensus 223 gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~ 270 (338)
T 3itj_A 223 KIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVS-GLFYAIGHT 270 (338)
T ss_dssp TEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECS-EEEECSCEE
T ss_pred CeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeC-EEEEEeCCC
Confidence 789999999999998876666677765 4568898 799999875
No 236
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.13 E-value=0.0013 Score=64.57 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+++|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 212 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 212 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence 468999999999999999999999999999986543
No 237
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=97.13 E-value=0.0045 Score=60.79 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||+|.+|+-.|..|++.|.+|+++|+.+.
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 214 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 214 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 46899999999999999999999999999998543
No 238
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.12 E-value=0.0029 Score=62.42 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHH----CCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHS----QGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~----~G~~V~vlE~~~~ 82 (445)
..+|+|||||.+|+-+|..|++ .|.+|+++++.+.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~ 218 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 218 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence 4689999999999999999987 4789999997654
No 239
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.07 E-value=0.0048 Score=60.75 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=34.9
Q ss_pred CCcEEeCceeeEEEecCCCcCeEEeCCCc-----eEEeccEEEEcCChh
Q 042352 260 FESILLNTRVLSIDFDEQNMPNVRLANGE-----TLKSEIGVILAVEEP 303 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~~~~~V~~~~g~-----~i~a~~~VV~a~~~~ 303 (445)
|++|+++++|++|+.++++.+.|++.+++ ++.+| .||+|++..
T Consensus 241 Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D-~vi~a~G~~ 288 (483)
T 3dgh_A 241 GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYD-TVLWAIGRK 288 (483)
T ss_dssp TCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEES-EEEECSCEE
T ss_pred CCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcC-EEEECcccc
Confidence 88999999999999876554667776654 68898 799999874
No 240
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=97.07 E-value=0.0051 Score=61.23 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+++|||||..|+=.|..+++.|.+|+|+++..
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~ 256 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI 256 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEecccc
Confidence 3679999999999999999999999999998743
No 241
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=97.03 E-value=0.003 Score=62.30 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||||.+|+-.|..|++.|.+|+++|+.+.
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 232 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDT 232 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 46899999999999999999999999999987554
No 242
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.03 E-value=0.0045 Score=60.83 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||+|.+|+-.|..|++.|.+|+++++.++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 221 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 221 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence 36899999999999999999999999999998543
No 243
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=96.85 E-value=0.01 Score=58.45 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+++|||+|.+|+-.|..|++.|.+|+++++.
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 217 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRS 217 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC
Confidence 357999999999999999999999999999873
No 244
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=96.74 E-value=0.0049 Score=56.55 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+++|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 146 ~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~ 180 (315)
T 3r9u_A 146 KNKEVAVLGGGDTALEEALYLANICSKIYLIHRRD 180 (315)
T ss_dssp TTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSS
T ss_pred CcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 34689999999999999999999999999998753
No 245
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=96.59 E-value=0.0023 Score=52.32 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=33.0
Q ss_pred ccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 43 SKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 43 ~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+......+|+|||+|..|...|..|.+.|++|+++|++..
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 3334456899999999999999999999999999998643
No 246
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=96.47 E-value=0.0024 Score=60.81 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+..
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~ 183 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLE 183 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch
Confidence 35899999999999999999999999999999887654
No 247
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=96.26 E-value=0.007 Score=48.42 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+.+|+|||+|-.|...|..|.+.|++|+++|++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3579999999999999999999999999999864
No 248
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=96.25 E-value=0.0046 Score=49.22 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|+|||+|..|...|..|.+.|++|+++|++.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999853
No 249
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.0063 Score=48.66 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+.+|+|+|+|-.|...|..|.++|++|+++|++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999864
No 250
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=96.15 E-value=0.0036 Score=57.60 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 180 (312)
T 4gcm_A 145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL 180 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence 368999999999999999999999999999998765
No 251
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=96.12 E-value=0.0082 Score=48.80 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+++|+|+|-.|...|..|.+.|++|+++|+++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 34579999999999999999999999999999863
No 252
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=96.09 E-value=0.0064 Score=57.84 Aligned_cols=38 Identities=34% Similarity=0.493 Sum_probs=34.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+++|||+|.+|+.+|..|++.|.+|+|+|+.+.+..
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 182 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP 182 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh
Confidence 57899999999999999999999999999999877554
No 253
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=96.06 E-value=0.0045 Score=60.46 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+++|||||.+|+-+|..|++.|.+|+|+|+.+.+..
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 208 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP 208 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence 46899999999999999999999999999999887643
No 254
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=96.05 E-value=0.0062 Score=55.29 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
++..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus 2 m~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 2 TGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 345689999999999999999999999999999864
No 255
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=96.01 E-value=0.0058 Score=59.50 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|.|||.|.+|+++|..|.++|++|++.|++.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 34689999999999999999999999999999865
No 256
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=95.98 E-value=0.0059 Score=57.72 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=33.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+++|||||.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 179 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 179 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec
Confidence 589999999999999999999999999999987654
No 257
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=95.88 E-value=0.0082 Score=55.03 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+|.|||+|..|...|..|+++|++|+++|++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 47999999999999999999999999999986
No 258
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=95.85 E-value=0.0078 Score=46.18 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~ 81 (445)
.+|+|+|+|..|...|..|.+.| ++|++++++.
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 47999999999999999999999 8999999863
No 259
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=95.82 E-value=0.0065 Score=58.91 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+|.|||.|.+|+++|..|+++|++|+++|.....-
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~ 41 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP 41 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence 579999999999999999999999999999876543
No 260
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=95.72 E-value=0.0076 Score=55.32 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...+++|||+|..|+-+|..|++.|.+|+|+|+...
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~ 186 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA 186 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence 346899999999999999999999999999997544
No 261
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=95.69 E-value=0.0049 Score=48.34 Aligned_cols=96 Identities=9% Similarity=-0.079 Sum_probs=44.8
Q ss_pred eEEeccEEEEcCChhHHhhhcCCCc-------ccCCCCCcceEEEEEeecCCCCCCCCCeEEecCCCCcceEEEEeeccc
Q 042352 289 TLKSEIGVILAVEEPEADKLLRQPV-------KFQRKPARSTVCLYFSADKDEIPVQEPVLFLNGSGKGIVNNMFFATNV 361 (445)
Q Consensus 289 ~i~a~~~VV~a~~~~~~~~ll~~p~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 361 (445)
+++|+ +||+|+|+.++.++..+|+ +++...+.+..|+++.|+++||..... .+ ..+..
T Consensus 5 ~~~Ad-~VIvTvP~~vL~~I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~~----~g----------d~s~~ 69 (130)
T 2e1m_B 5 TWTGD-LAIVTIPFSSLRFVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFTEA----DW----------KRELD 69 (130)
T ss_dssp EEEES-EEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCCHH----HH----------HHHHH
T ss_pred EEEcC-EEEEcCCHHHHhcCcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCCCc----cc----------cccCC
Confidence 68898 7999999999988766544 456778999999999999999643211 00 00110
Q ss_pred CCCCCCCCceEEEEEec-CC----CCCCCChHHHHHHHHHHHhHhCCCc
Q 042352 362 APLYGPLDKALISVSLI-GL----FADVMDDNLTAEVIRELSDWFGKST 405 (445)
Q Consensus 362 ~p~~~p~g~~~l~~~~~-~~----~~~~~~~e~~~~~~~~l~~~~~~~~ 405 (445)
+ ..+| ++..+.. ++ +..+++ +.++.++..|.+++|+..
T Consensus 70 ~---~~pg--~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~ 112 (130)
T 2e1m_B 70 A---IAPG--LYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHPSVD 112 (130)
T ss_dssp H---HSTT--HHHHHHHHCCCSCCCC-----------------------
T ss_pred C---CCCe--EEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCCCCc
Confidence 0 0112 2222221 22 344444 778999999999999644
No 262
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=95.66 E-value=0.011 Score=54.23 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|+|||||..|...|..++.+|++|+++|.++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999753
No 263
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=95.51 E-value=0.015 Score=46.38 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+|+|+|+|..|...|..|.+.|++|+++|++
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999999999975
No 264
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=95.42 E-value=0.015 Score=53.60 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||+|..|.+.|..|+++|++|+++|++.
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~G~~V~l~d~~~ 39 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CceEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999999864
No 265
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=95.39 E-value=0.01 Score=58.34 Aligned_cols=39 Identities=28% Similarity=0.551 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
...+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+..
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 223 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT 223 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence 457899999999999999999999999999999876543
No 266
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.35 E-value=0.018 Score=48.31 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~ 81 (445)
..+|+|||+|..|...|..|.+. |++|+++|++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 45799999999999999999999 99999999864
No 267
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=95.31 E-value=0.017 Score=56.85 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+++|||||.+|+-+|..|++.|.+|+++|+.+++..
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 211 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN 211 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence 46899999999999999999999999999999887653
No 268
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=95.30 E-value=0.019 Score=55.46 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l 185 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL 185 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc
Confidence 5689999999999999999999999999999987654
No 269
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=95.29 E-value=0.026 Score=54.45 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+...+|.|||+|..|...|..|+++|++|+++|++..
T Consensus 52 ~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 52 YDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 3446899999999999999999999999999998754
No 270
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=95.24 E-value=0.016 Score=54.40 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+..+|+|||+|..|...|..|++.|++|++++++
T Consensus 3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3468999999999999999999999999999875
No 271
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=95.20 E-value=0.019 Score=55.03 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
...+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l 179 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence 35789999999999999999999999999999987764
No 272
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=95.17 E-value=0.021 Score=55.43 Aligned_cols=38 Identities=24% Similarity=0.486 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+++|||+|.+|+-+|..|++.|.+|+++|+.+++..
T Consensus 148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~ 185 (449)
T 3kd9_A 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR 185 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch
Confidence 46899999999999999999999999999999876554
No 273
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=95.13 E-value=0.022 Score=52.94 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+|+|||+|..|.+.|..|+++|++|+++++.
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 57999999999999999999999999999974
No 274
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=95.10 E-value=0.021 Score=52.92 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|.|||.|-+|++ +|..|.++|++|++.|++..
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~ 39 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY 39 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 457999999999997 78899999999999998654
No 275
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=95.06 E-value=0.02 Score=52.84 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|+|||+|..|.+.|..|++.|++|+++.|+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 479999999999999999999999999999875
No 276
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=95.04 E-value=0.019 Score=55.59 Aligned_cols=37 Identities=32% Similarity=0.516 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll 183 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKIN 183 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCS
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccc
Confidence 4589999999999999999999999999999987754
No 277
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=95.01 E-value=0.023 Score=52.70 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
.+|+|||||-.|.+.|..|++.|+ +|+++|.+.
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 589999999999999999999998 999999864
No 278
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=94.95 E-value=0.021 Score=52.58 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|+|||+|..|.+.|..|+++|++|++++|+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 479999999999999999999999999999865
No 279
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=94.94 E-value=0.02 Score=53.88 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-+|..|++.|.+|+++|+.+.
T Consensus 166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 200 (369)
T 3d1c_A 166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG 200 (369)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence 45899999999999999999999999999998654
No 280
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=94.94 E-value=0.034 Score=50.96 Aligned_cols=35 Identities=31% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|.|||.|..|...|..|++.|++|++++++.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999874
No 281
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=94.92 E-value=0.024 Score=52.04 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
++.+|.|||.|..|...|..|++.|++|++++++..
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 55 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS 55 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 446899999999999999999999999999998754
No 282
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=94.86 E-value=0.023 Score=52.01 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 177 (311)
T 2q0l_A 143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG 177 (311)
T ss_dssp TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 47899999999999999999999999999998654
No 283
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=94.86 E-value=0.025 Score=48.97 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|+|||+|-.|...|..|.++|++|+++|++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 69999999999999999999999999999864
No 284
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=94.84 E-value=0.024 Score=52.25 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
..+|+|||+|..|.+.|..|+++|+ +|+++|++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 4589999999999999999999998 999999864
No 285
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=94.78 E-value=0.025 Score=51.89 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|+++|++|++++++.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 479999999999999999999999999999863
No 286
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=94.74 E-value=0.031 Score=51.53 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
..+|+|||||..|.+.|..|+..|+ +|+++|.+.
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 4589999999999999999999998 999999763
No 287
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=94.71 E-value=0.033 Score=47.85 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|.|||+|..|.+.|..|++.|++|++++++..
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 35799999999999999999999999999998765
No 288
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.028 Score=50.97 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+..+|.|||+|..|...|..|+ +|++|+++|++.
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 4678999999999999999999 999999999864
No 289
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=94.70 E-value=0.023 Score=56.57 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus 177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 357899999999999999999999999999999765
No 290
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=94.68 E-value=0.031 Score=53.48 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||+|.+|+-+|..|.+.|.+|+++|+.+.+.
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 178 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM 178 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence 4689999999999999999999999999999987654
No 291
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=94.68 E-value=0.035 Score=53.26 Aligned_cols=38 Identities=39% Similarity=0.466 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+++|||+|..|+-+|..|++.|.+|+++|+.+.+-.
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~ 189 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA 189 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh
Confidence 56899999999999999999999999999999877643
No 292
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=94.67 E-value=0.03 Score=54.64 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
...+|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus 196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~ 232 (464)
T 2xve_A 196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP 232 (464)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence 3578999999999999999999999999999988664
No 293
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=94.67 E-value=0.026 Score=51.60 Aligned_cols=35 Identities=37% Similarity=0.436 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 178 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 178 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence 46899999999999999999999999999998654
No 294
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=94.67 E-value=0.028 Score=54.95 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||+|.+|+-+|..|++.|.+|+++|+.+++.
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 212 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF 212 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC
Confidence 4689999999999999999999999999999977653
No 295
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=94.65 E-value=0.033 Score=52.69 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...+|+|||+|..|+.+|..|...|.+|+++|++..
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~ 224 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA 224 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 346899999999999999999999999999998753
No 296
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=94.57 E-value=0.03 Score=54.68 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+|+|||+|..|+..|..|+++|++|+++|++
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~ 40 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD 40 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence 468999999999999999999999999999975
No 297
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=94.56 E-value=0.038 Score=51.78 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+|+|||+|.-|.+.|..|+++|++|++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 358999999999999999999999999999986
No 298
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=94.53 E-value=0.034 Score=54.21 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 34579999999999999999999999999999764
No 299
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=94.47 E-value=0.02 Score=55.70 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CC-CEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQ-GR-PFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~-G~-~V~vlE~~~~ 82 (445)
...+|+|||+|.-|+..|..|+++ |+ +|+++|++..
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 345899999999999999999999 99 9999998865
No 300
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=94.46 E-value=0.029 Score=51.10 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|+|||+|..|.+.|..|+++|++|++++|+.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 479999999999999999999999999999873
No 301
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=94.44 E-value=0.027 Score=56.16 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-.|..|++.+.+|+|+++.+.
T Consensus 185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219 (545)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence 46899999999999999999999999999999875
No 302
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=94.42 E-value=0.038 Score=53.35 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||.|.-|+..|..|+++|++|++++++..
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57899999999999999999999999999998754
No 303
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=94.41 E-value=0.039 Score=49.97 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+|.|||+|..|...|..|+++|++|++++++..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~ 34 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence 599999999999999999999999999998754
No 304
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=94.41 E-value=0.029 Score=55.99 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN 225 (549)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 46899999999999999999999999999999765
No 305
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=94.40 E-value=0.038 Score=50.57 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||+|..|...|..|++.|++|++++++.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999864
No 306
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=94.39 E-value=0.031 Score=51.64 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
...+|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 194 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF 194 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence 3468999999999999999999999999999987553
No 307
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=94.38 E-value=0.03 Score=51.06 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|.|||.|..|...|..|+++|++|++++++..
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998765
No 308
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=94.35 E-value=0.038 Score=55.40 Aligned_cols=37 Identities=35% Similarity=0.513 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 187 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM 187 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc
Confidence 3589999999999999999999999999999987653
No 309
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=94.34 E-value=0.019 Score=54.16 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+|.|||+|..|.+.|..|+++|++|++++++
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~ 47 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN 47 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 7999999999999999999999999999876
No 310
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=94.33 E-value=0.043 Score=47.46 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+...|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 3568999999999999999999999999999864
No 311
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=94.32 E-value=0.043 Score=53.36 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 183 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL 183 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence 4689999999999999999999999999999987653
No 312
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=94.31 E-value=0.04 Score=51.63 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 45 LERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 45 ~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
|++..+|.|||.|..|...|..|++.|++|++++++.
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4455789999999999999999999999999999864
No 313
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=94.31 E-value=0.044 Score=50.72 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
.+|+|||||..|.+.|+.|+..|+ +|+++|.+.
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 589999999999999999999998 999999864
No 314
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=94.29 E-value=0.041 Score=53.40 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~~~ 83 (445)
...+|+|||+|.+|+-.|..|++.|.+ |+++++.+.+
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~ 248 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD 248 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 357899999999999999999999999 9999998654
No 315
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=94.29 E-value=0.035 Score=51.44 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~ 189 (335)
T 2a87_A 154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE 189 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence 357899999999999999999999999999998654
No 316
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=94.28 E-value=0.045 Score=50.24 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
+..+|+|||+|..|.+.|+.|+..|+ +|+++|.+
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 45689999999999999999999999 99999986
No 317
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=94.26 E-value=0.042 Score=53.61 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+++|||+|.+|+-.|..|++.|.+|+++|+.+++.
T Consensus 172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 208 (466)
T 3l8k_A 172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL 208 (466)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC
Confidence 3689999999999999999999999999999987654
No 318
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=94.26 E-value=0.033 Score=51.32 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 186 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT 186 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence 46899999999999999999999999999998654
No 319
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=94.25 E-value=0.048 Score=53.26 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999764
No 320
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=94.21 E-value=0.035 Score=52.02 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999864
No 321
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=94.21 E-value=0.042 Score=50.61 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
.+|+|||+|..|.+.|+.|++.|+ +|+++|++.
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 479999999999999999999998 999999863
No 322
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=94.19 E-value=0.029 Score=48.69 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEE-EecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVL-LEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~v-lE~~~ 81 (445)
+.+|.|||+|..|.+.|..|++.|++|++ ++++.
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~ 57 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP 57 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 45899999999999999999999999999 77754
No 323
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=94.14 E-value=0.043 Score=53.15 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|+..|..|+++|++|++++++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 479999999999999999999999999999864
No 324
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=94.08 E-value=0.043 Score=52.57 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+..+|+|||+|..|+..|..|++ |++|+++|++.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~ 68 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ 68 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence 34589999999999999999998 99999999763
No 325
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=94.07 E-value=0.042 Score=51.39 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
..+.+|+|+|||.+|+.+|..|...|. +|+++|++.
T Consensus 186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G 222 (398)
T 2a9f_A 186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG 222 (398)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 346789999999999999999999999 999999974
No 326
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=94.05 E-value=0.032 Score=49.86 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+...|+|||+|-.|+..|..|.+.|++|+|++...
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 34689999999999999999999999999998653
No 327
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=94.04 E-value=0.054 Score=47.79 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 34689999999999999999999999999999864
No 328
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=94.01 E-value=0.047 Score=55.17 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+++|||||.+|+-+|..|++.|.+|+++|+.
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 318 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS 318 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 357999999999999999999999999999986
No 329
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=93.97 E-value=0.037 Score=51.20 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~ 186 (335)
T 2zbw_A 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ 186 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence 46899999999999999999999999999998654
No 330
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=93.94 E-value=0.054 Score=49.99 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=31.5
Q ss_pred cCCCCCcEEEECCCHHHHHHHHHHHHCC----CCEEEEecCC
Q 042352 44 KLERKDRVIVIGAGLAGLAAATRLHSQG----RPFVLLEASD 81 (445)
Q Consensus 44 ~~~~~~dviIIGaG~~GLsaA~~L~~~G----~~V~vlE~~~ 81 (445)
.+++..+|.|||+|..|.+.|..|.+.| ++|++++++.
T Consensus 18 ~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 18 LYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp ----CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred hccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence 3445568999999999999999999999 8999999875
No 331
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=93.86 E-value=0.051 Score=50.15 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||.|..|...|..|++.|++|++++++.
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 4589999999999999999999999999999863
No 332
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=93.83 E-value=0.062 Score=49.46 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
+..+|+|||||..|.+.|+.|+..|+ +|+++|.+.
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 45689999999999999999999998 999999864
No 333
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=93.81 E-value=0.073 Score=45.92 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|++.|++|++++++.
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999999999999999999999999999863
No 334
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=93.81 E-value=0.054 Score=53.71 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=33.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
.+++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l 250 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK 250 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence 689999999999999999999999999999987654
No 335
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=93.80 E-value=0.055 Score=49.85 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...+|+|||+|..|.+.|..|+++|++|+++ ++
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 3467999999999999999999999999999 65
No 336
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=93.79 E-value=0.042 Score=50.47 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~ 189 (319)
T 3cty_A 155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK 189 (319)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence 46899999999999999999999999999998653
No 337
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=93.75 E-value=0.053 Score=50.64 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=32.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
....+|+|+|||.+|..+|..|...|. +|+++|++
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 356899999999999999999999998 89999987
No 338
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=93.73 E-value=0.08 Score=51.44 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~~ 82 (445)
...+|+|||||.+|+-+|..+.+.|.+ |+++++.+.
T Consensus 263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~ 299 (456)
T 2vdc_G 263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR 299 (456)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence 357899999999999999999999984 999988654
No 339
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=93.69 E-value=0.059 Score=49.36 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|+|||+|..|.+.|..|+ +|++|+++.|+.
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 47999999999999999999 999999999864
No 340
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=93.67 E-value=0.079 Score=48.66 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|.|||+|..|...|..|++.|++|++++++..
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~ 64 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE 64 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 35799999999999999999999999999998643
No 341
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=93.66 E-value=0.068 Score=53.86 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=34.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCc
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVGG 85 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~GG 85 (445)
..+++|||+|.+|+-+|..|++.|.+|+++|+.+.+..
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 224 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP 224 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc
Confidence 46899999999999999999999999999999876543
No 342
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=93.63 E-value=0.063 Score=49.85 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+|.|||+|..|...|..|+++|++|++++++
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 468999999999999999999999999999885
No 343
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=93.62 E-value=0.076 Score=52.59 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+++|||+|.+|+-.|..|++.|.+|+|+++.
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~ 242 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 242 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence 356999999999999999999999999999984
No 344
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=93.62 E-value=0.061 Score=48.68 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+|.|||+|..|...|..|++.|++|++++++..
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE 35 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 4699999999999999999999999999998754
No 345
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=93.54 E-value=0.065 Score=48.99 Aligned_cols=32 Identities=34% Similarity=0.572 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
+|+|||||..|.+.|+.|+..|+ +|+++|.+.
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 69999999999999999999998 999999863
No 346
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=93.51 E-value=0.068 Score=51.26 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
++.+|+|||.|.-||..|..|++.|++|+.+|-+
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did 53 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN 53 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4568999999999999999999999999999865
No 347
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=93.49 E-value=0.053 Score=49.11 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+|.|||.|..|...|..|++.|++|++++++..
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA 35 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 3699999999999999999999999999998754
No 348
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=93.42 E-value=0.03 Score=44.86 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+|+|||+|..|...|..|.+.|++|++++++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~ 53 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN 53 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 467999999999999999999999999999986
No 349
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=93.34 E-value=0.062 Score=52.61 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~ 80 (445)
.+|.|||+|..|+..|..|+++ |++|++++++
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~ 43 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN 43 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 5799999999999999999998 7999999975
No 350
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=93.34 E-value=0.088 Score=48.42 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
..+|+|||+|..|.+.|+.|+..|+ +|+++|.+.
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 4689999999999999999999988 999999864
No 351
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=93.34 E-value=0.054 Score=53.70 Aligned_cols=35 Identities=37% Similarity=0.436 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~ 389 (521)
T 1hyu_A 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 389 (521)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence 46899999999999999999999999999998654
No 352
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=93.29 E-value=0.061 Score=50.36 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 198 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF 198 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence 468999999999999999999999999999987543
No 353
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=93.29 E-value=0.057 Score=52.66 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~ 80 (445)
+.+|.|||+|..|+..|..|++. |++|++++++
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~ 39 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN 39 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 35899999999999999999999 8999999976
No 354
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=93.22 E-value=0.068 Score=48.76 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~d~~~ 36 (302)
T 2h78_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (302)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 579999999999999999999999999999863
No 355
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=93.16 E-value=0.064 Score=51.80 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+|+|||+|..|+..|..|++.|++|++++++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~ 32 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS 32 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 6999999999999999999999999999975
No 356
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=93.14 E-value=0.093 Score=54.05 Aligned_cols=34 Identities=35% Similarity=0.538 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~ 345 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence 3579999999999999999999999999999763
No 357
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=93.12 E-value=0.084 Score=48.26 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~ 189 (323)
T 3f8d_A 153 KNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF 189 (323)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCC
Confidence 3578999999999999999999999999999987653
No 358
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=93.11 E-value=0.074 Score=48.45 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||+|..|...|..|.+.|++|++++++.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 37 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME 37 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999998763
No 359
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=93.05 E-value=0.11 Score=48.09 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||.|..|-+.|..|.+.|++|++++++.
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 41 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR 41 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 569999999999999999999999999999874
No 360
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=93.02 E-value=0.081 Score=51.65 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ-GRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~-G~~V~vlE~~~~~G 84 (445)
..+++|||+|.+|+-+|..|++. |.+|+++|+.+.+.
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l 196 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIM 196 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccc
Confidence 46899999999999999999999 99999999987654
No 361
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=93.00 E-value=0.089 Score=50.08 Aligned_cols=34 Identities=38% Similarity=0.521 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999864
No 362
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=92.97 E-value=0.13 Score=46.37 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+..|+|.|+|..|...+..|.++|++|+++.|+..
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ 37 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 35799999999999999999999999999988643
No 363
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=92.88 E-value=0.11 Score=50.62 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+.+|.|||.|..|...|..|+++|++|++++++.
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 37 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999999874
No 364
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=92.86 E-value=0.097 Score=47.96 Aligned_cols=32 Identities=41% Similarity=0.670 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~ 81 (445)
+|+|||+|..|.+.|..|+++ |++|+++|++.
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 699999999999999999996 78999999864
No 365
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=92.85 E-value=0.077 Score=48.70 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
..+|.|||.|..|...|..|++.|+ +|++++++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 4689999999999999999999999 99999996
No 366
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=92.81 E-value=0.051 Score=50.86 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-------CCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG-------RPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G-------~~V~vlE~~~~ 82 (445)
.+|.|||+|..|.+.|..|+++| ++|++++++..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~ 49 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED 49 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence 47999999999999999999999 89999998765
No 367
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=92.77 E-value=0.11 Score=49.20 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999864
No 368
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=92.76 E-value=0.11 Score=47.59 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
.+|+|||||..|.+.|+.|+..|+ +|+++|.+.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 479999999999999999999997 999999753
No 369
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=92.75 E-value=0.13 Score=47.35 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
...+|+|||+|..|.+.|+.|+..|+ +|+++|.+
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~ 55 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM 55 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 34689999999999999999999987 89999974
No 370
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=92.74 E-value=0.11 Score=45.33 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 46 ERKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+...|+|.|| |..|...|..|.++|++|+++.|+.
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 34568999998 9999999999999999999999864
No 371
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=92.72 E-value=0.11 Score=48.62 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999863
No 372
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=92.72 E-value=0.099 Score=51.08 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=31.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+.+.+|.|||+|..|...|..|+++|++|++++++
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~ 47 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRS 47 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34568999999999999999999999999999886
No 373
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=92.71 E-value=0.11 Score=50.66 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||+|.+|+-.|..|++.|.+|+++|+.+.
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~ 204 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE 204 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 46899999999999999999999999999998764
No 374
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=92.70 E-value=0.11 Score=47.66 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
..+|+|||+|-.|.+.|+.|+..|. +|+++|.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999999987 899999763
No 375
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=92.70 E-value=0.12 Score=46.42 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...++|+|+|-.|.++|..|++.|.+|+|+.|+
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~ 151 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 151 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence 467999999999999999999999999999876
No 376
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=92.69 E-value=0.082 Score=48.94 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEA 79 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~ 79 (445)
+|.|||+|..|.+.|..|+++|++|+++++
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 599999999999999999999999999998
No 377
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=92.68 E-value=0.11 Score=48.63 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..|+|||||..|..+|+.+.+.|++|+++|.++.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5799999999999999999999999999997654
No 378
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=92.66 E-value=0.13 Score=49.17 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+|+|||.|-.|...|..|.+.|++|+|+|++..
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~ 38 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD 38 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 4799999999999999999999999999998743
No 379
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=92.65 E-value=0.047 Score=53.07 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|+|+|+|--|.+.|..|.+.|++|+|+|++.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3479999999999999999999999999999874
No 380
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=92.62 E-value=0.11 Score=50.88 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
..+++|||+|.+|+-.|..|++.|.+|+++|+.+.+
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 226 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI 226 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 468999999999999999999999999999987653
No 381
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=92.61 E-value=0.11 Score=46.25 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC----CCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG----RPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G----~~V~vlE~~~~ 82 (445)
.+|.|||+|..|.+.|..|+++| ++|++++++..
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~ 42 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK 42 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence 47999999999999999999999 79999998764
No 382
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=92.59 E-value=0.11 Score=47.90 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
..+|+|||+|..|.+.|+.|+..|+ +|+++|.+
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN 39 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 4689999999999999999999987 89999974
No 383
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=92.55 E-value=0.14 Score=46.08 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR---PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~---~V~vlE~~~ 81 (445)
..+|.|||+|-.|.+.|..|.++|+ +|++++++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 3579999999999999999999999 999999874
No 384
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=92.49 E-value=0.15 Score=46.39 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=31.1
Q ss_pred CcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIG-AGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.+|.||| +|..|.+.|..|++.|++|++++++..
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~ 56 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 56 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence 4799999 999999999999999999999998653
No 385
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=92.44 E-value=0.13 Score=47.12 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
..+|.|||+|..|.+.|..|++.|+ +|++++++.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 3579999999999999999999999 999999874
No 386
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=92.42 E-value=0.14 Score=45.65 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||+|-+|-++|+.|++.|.+|+|+.|+..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ 152 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR 152 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56899999999999999999999999999988643
No 387
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=92.39 E-value=0.12 Score=44.17 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=29.2
Q ss_pred cEEEEC-CCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 50 RVIVIG-AGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 50 dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+|+||| +|..|...|..|++.|++|++++++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 589999 9999999999999999999999985
No 388
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=92.38 E-value=0.11 Score=47.43 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
..+|+|||||..|.+.|+.|+.+|+ +|+++|.+.
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 3689999999999999999999998 899999865
No 389
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=92.35 E-value=0.15 Score=46.10 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=30.6
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+ |..|.+.|..|.+.|++|++++++.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~ 45 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP 45 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 47999999 9999999999999999999999763
No 390
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=92.34 E-value=0.13 Score=44.76 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+.+||+|||||++|+++|..|++.|.+|+|+|++.
T Consensus 2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~ 36 (232)
T 2cul_A 2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL 36 (232)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 46899999999999999999999999999999973
No 391
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=92.28 E-value=0.09 Score=50.16 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||+|..|+..|..|++ |++|++++++.
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 69999999999999999999 99999999863
No 392
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=92.28 E-value=0.076 Score=48.72 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=29.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHC-----C-CCEEEEec
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ-----G-RPFVLLEA 79 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~-----G-~~V~vlE~ 79 (445)
.+|.|||+|..|...|..|++. | ++|+++++
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 3799999999999999999999 9 99999987
No 393
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=92.24 E-value=0.12 Score=53.07 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~ 347 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 347 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence 4579999999999999999999999999999763
No 394
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=92.23 E-value=0.11 Score=47.73 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+++|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~ 188 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK 188 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence 46899999999999999999999999999998654
No 395
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=92.22 E-value=0.11 Score=47.67 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~ 81 (445)
.+|.|||.|..|...|..|++.| ++|++++++.
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 57999999999999999999999 9999999875
No 396
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=92.18 E-value=0.15 Score=48.05 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...|+|+|+|..|+.+|..|+..|++|++++++.
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4689999999999999999999999999999764
No 397
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=92.16 E-value=0.11 Score=47.87 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
+|+|||+|..|.+.|..|++.|+ +|+++|++
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~ 34 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 69999999999999999999999 99999975
No 398
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=92.15 E-value=0.11 Score=47.52 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG--RPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G--~~V~vlE~~ 80 (445)
.+|+|||+|..|.+.|..|+++| .+|+++|++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~ 35 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 37999999999999999999999 689999985
No 399
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=92.08 E-value=0.17 Score=49.65 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+|.|||+|..|...|..|+++|++|++++++.
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~ 43 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ 43 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 400
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=92.04 E-value=0.12 Score=45.62 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
..+|+|||+|-.|..+|..|++.|. +|+|+|+..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 3689999999999999999999997 899999753
No 401
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=92.03 E-value=0.17 Score=46.64 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=31.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
....+|+|||||..|.+.|+.|+.+|. +++++|.+
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 345789999999999999999999987 89999975
No 402
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=91.92 E-value=0.12 Score=46.37 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...++|+|+|-.|.++|+.|++.|.+|+|+.|+
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~ 151 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRT 151 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 467999999999999999999999999999886
No 403
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=91.89 E-value=0.19 Score=51.65 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=32.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+.-.+|.|||||..|-..|+.++..|++|+++|.+.
T Consensus 314 ~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~ 349 (742)
T 3zwc_A 314 QPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 349 (742)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred ccccEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence 345789999999999999999999999999999754
No 404
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=91.83 E-value=0.16 Score=45.67 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 33 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999998763
No 405
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=91.79 E-value=0.14 Score=49.85 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHH--------------------HCCC-CEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLH--------------------SQGR-PFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~--------------------~~G~-~V~vlE~~~~ 82 (445)
..+|+|||+|..|+-+|..|+ +.|. +|+|+++.+.
T Consensus 145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~ 200 (460)
T 1cjc_A 145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 200 (460)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence 468999999999999999999 5687 6999998644
No 406
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=91.77 E-value=0.16 Score=46.17 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
...++|||+|-.|.++|+.|++.|. +|+|+.|+
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~ 174 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRT 174 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4679999999999999999999998 89999876
No 407
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=91.73 E-value=0.11 Score=46.84 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-.|..|++.| +|+++++.+.
T Consensus 141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~ 174 (297)
T 3fbs_A 141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV 174 (297)
T ss_dssp TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence 568999999999999999999999 9999987543
No 408
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=91.73 E-value=0.17 Score=45.45 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
.+|.|||+|..|.+.|..|++.|+ +|++++++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 36 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 369999999999999999999998 899998763
No 409
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=91.70 E-value=0.14 Score=45.61 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQG-RPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G-~~V~vlE~~~ 81 (445)
+|.|||+|..|.+.|..|++.| ++|++++++.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~ 34 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (263)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence 5999999999999999999999 9999999863
No 410
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=91.66 E-value=0.14 Score=48.11 Aligned_cols=39 Identities=33% Similarity=0.530 Sum_probs=34.6
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC---CEEEEecCC-CCCcc
Q 042352 48 KDRVIVIGA-GLAGLAAATRLHSQGR---PFVLLEASD-AVGGR 86 (445)
Q Consensus 48 ~~dviIIGa-G~~GLsaA~~L~~~G~---~V~vlE~~~-~~GG~ 86 (445)
..+|+|||| |..|+.||..+...|. +|+++|.+. .-||+
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~ 257 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP 257 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence 578999999 9999999999999998 999999875 45665
No 411
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=91.65 E-value=0.17 Score=45.93 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||+|..|...|..|.+.|++|++++++.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~ 33 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP 33 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 59999999999999999999999999999864
No 412
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=91.65 E-value=0.21 Score=46.24 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 46 ERKDRVIVIGA-GLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGa-G~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
++..+|+|||+ |..|.++|+.|+..|. +|+++|.+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~ 43 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF 43 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 34568999998 9999999999999985 89999974
No 413
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=91.62 E-value=0.13 Score=48.64 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-------CCEEEEecCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQG-------RPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G-------~~V~vlE~~~~ 82 (445)
.+|.|||+|..|.+.|..|+++| ++|++++++..
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence 36999999999999999999999 99999998754
No 414
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=91.60 E-value=0.19 Score=47.47 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...|+|||+|..|+.+|..|+..|.+|++++++.
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999999763
No 415
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=91.60 E-value=0.15 Score=46.59 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAG-LAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG-~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...+++|||+| +.|..+|..|...|.+|+|++++
T Consensus 176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~ 210 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 210 (320)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence 45789999999 67999999999999999998664
No 416
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=91.58 E-value=0.19 Score=49.08 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+|.|||+|..|...|..|+++|++|++++++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~ 37 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRT 37 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 357999999999999999999999999999986
No 417
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=91.52 E-value=0.22 Score=43.81 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC----CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR----PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~----~V~vlE~~~ 81 (445)
.+|.|||+|..|.+.|..|.++|+ +|++++++.
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT 39 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence 479999999999999999999998 999999864
No 418
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=91.46 E-value=0.16 Score=45.86 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|.|||+|..|...|..|.+ |++|++++++.
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 69999999999999999999 99999999864
No 419
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=91.41 E-value=0.15 Score=46.20 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
+|+|||||..|.+.|+.|+..|+ +|+++|.+.
T Consensus 2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~ 35 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 69999999999999999999988 899999753
No 420
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=91.39 E-value=0.076 Score=46.38 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...+++|+|+|-.|...|..|.+.|+ |+++|++..
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~ 42 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV 42 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence 34579999999999999999999999 999998643
No 421
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=91.30 E-value=0.18 Score=46.23 Aligned_cols=33 Identities=42% Similarity=0.644 Sum_probs=29.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
..+|+|||+|..|.+.|+.|+..|. +|+++|.+
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~ 40 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 3589999999999999999998875 79999975
No 422
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=91.30 E-value=0.16 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRP-FVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~-V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|++.|++ |.+++++.
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~ 44 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE 44 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 4799999999999999999999999 89998763
No 423
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=91.29 E-value=0.18 Score=46.32 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
..+|+|||+|..|.+.|+.|+..|. +++++|.+
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~ 43 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 4589999999999999999999987 89999974
No 424
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=91.22 E-value=0.15 Score=48.86 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..+..|||.|.-|+..|..|+++|++|+++|++.
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~ 44 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ 44 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4678999999999999999999999999999763
No 425
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=91.18 E-value=0.062 Score=46.72 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
.+|.|||+|..|.+-|..|.++|++|+.+++.
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~ 38 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP 38 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence 47999999999999999999999999999874
No 426
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=91.17 E-value=0.17 Score=49.01 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...|+|||+|-.|...|..|.+.|.+|+|++..
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 467999999999999999999999999999974
No 427
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=91.17 E-value=0.19 Score=46.19 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
+..+|+|||||-.|.+.|+.|+..|. .|.++|.+
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 34689999999999999999999885 79999864
No 428
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=91.16 E-value=0.27 Score=43.44 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
+++|||+|-+|-++|+.|.+.|. +|+|+.|+.
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~ 142 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI 142 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 79999999999999999999998 999998863
No 429
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=91.16 E-value=0.21 Score=48.81 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|+++|++|++++++.
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~ 35 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999863
No 430
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=91.11 E-value=0.19 Score=52.01 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCCcEEEEC--CCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIG--AGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIG--aG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
...+|+||| +|..|+-+|..|++.|.+|+|+++.+
T Consensus 527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~ 563 (729)
T 1o94_A 527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 563 (729)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence 346899999 99999999999999999999999876
No 431
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=91.09 E-value=0.17 Score=43.74 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+..|+|.|| |..|...+..|.++|++|+++.|+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 357999995 9999999999999999999999864
No 432
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=91.01 E-value=0.18 Score=45.85 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|.+.|++|++++++.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 38 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 38 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 479999999999999999999999999998763
No 433
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=90.89 E-value=0.18 Score=45.29 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+|+|||+|-.|-+.|..|.+.|.+|++++++
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~ 161 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRT 161 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence 357999999999999999999999999999876
No 434
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=90.84 E-value=0.24 Score=45.01 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
....|.|||+|-.|..+|..|...|.+|++++++.
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~ 190 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS 190 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34679999999999999999999999999999863
No 435
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=90.83 E-value=0.2 Score=45.96 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
++.+|+|||||-.|.+.|+.|+..+. .+.++|.+
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~ 39 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 44689999999999999999999876 79999874
No 436
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=90.81 E-value=0.19 Score=45.93 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--CEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGR--PFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~~ 81 (445)
+|+|||+|..|.+.|+.|+..|. +|+++|.+.
T Consensus 2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 35 (314)
T 3nep_X 2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD 35 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 69999999999999999999987 899999865
No 437
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=90.80 E-value=0.21 Score=44.72 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
...++|||+|-+|-++|+.|++.|. +|+|+.|+.
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 151 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM 151 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4679999999999999999999998 899998864
No 438
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=90.78 E-value=0.28 Score=41.33 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=30.4
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..|+|+|| |..|...+..|.++|++|+++.|+.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 47999998 9999999999999999999998864
No 439
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Probab=90.77 E-value=0.12 Score=49.31 Aligned_cols=30 Identities=23% Similarity=0.229 Sum_probs=27.9
Q ss_pred CcEEEECCCHHHHHHHHHHHH-CCCCEEEEe
Q 042352 49 DRVIVIGAGLAGLAAATRLHS-QGRPFVLLE 78 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~-~G~~V~vlE 78 (445)
.+|+|||+|..|.+.|..|++ +|++|++++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~ 33 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT 33 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence 379999999999999999998 599999998
No 440
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=90.74 E-value=0.16 Score=49.94 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~ 81 (445)
...+|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~ 56 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP 56 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence 3468999999999998 6999999999999999764
No 441
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=90.71 E-value=0.29 Score=45.42 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
..|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~ 49 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG 49 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence 469999999999999999999999999999875
No 442
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=90.69 E-value=0.26 Score=44.63 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
....|.|||+|-.|..+|..|...|.+|++++++.
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 35689999999999999999999999999999863
No 443
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=90.68 E-value=0.18 Score=46.63 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
..+|+|||+|.+|+-+|..|++.| +|+++++.
T Consensus 163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~ 194 (357)
T 4a9w_A 163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQH 194 (357)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence 468999999999999999999998 69999875
No 444
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=90.65 E-value=0.2 Score=45.01 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|+|+|||..|...+..|.++|++|+++.|+.
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 579999999999999999999999999998864
No 445
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=90.64 E-value=0.24 Score=48.33 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+|.|||+|..|...|..|+++|++|++++++
T Consensus 3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~ 33 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT 33 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6999999999999999999999999999986
No 446
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=90.58 E-value=0.13 Score=55.00 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~ 320 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS 320 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc
Confidence 3689999999999999999999999999999987654
No 447
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=90.56 E-value=0.21 Score=45.10 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--GRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--G~~V~vlE~~~ 81 (445)
..+|.|||+|..|.+.|..|++. |++|++++++.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 41 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD 41 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 35799999999999999999988 67999998763
No 448
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=90.48 E-value=0.28 Score=47.39 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
....++|+|+|-.|..+|..|+..|.+|++.|+++
T Consensus 264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~ 298 (488)
T 3ond_A 264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP 298 (488)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45789999999999999999999999999999764
No 449
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=90.45 E-value=0.29 Score=43.55 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+++|||+|-.|-+.|..|.+.|++|++++++.
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~ 149 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP 149 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 79999999999999999999999999998863
No 450
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=90.41 E-value=0.21 Score=44.23 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|.+.|++|.+++++.
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~ 36 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL 36 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence 479999999999999999999999999999863
No 451
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=90.36 E-value=0.21 Score=53.76 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
.+|+|||||..|+-+|..|.+.|. +|+|+++.+
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 489999999999999999999997 899999876
No 452
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=90.36 E-value=0.21 Score=49.75 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~ 220 (542)
T 1w4x_A 186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 220 (542)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence 47899999999999999999999999999998654
No 453
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=90.28 E-value=0.3 Score=44.65 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
....++|+|||-+|-++|+.|++.|. +|+|+.|+
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK 187 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence 34689999999999999999999998 89999886
No 454
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=90.18 E-value=0.31 Score=43.52 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
....++|+|+|-+|-++|+.|++.|. +|+|+.|+
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~ 153 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD 153 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35689999999999999999999996 89999875
No 455
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=90.09 E-value=0.28 Score=50.40 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCCcEEEEC--CCHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 042352 47 RKDRVIVIG--AGLAGLAAATRLHSQGRPFVLLEASDAVG 84 (445)
Q Consensus 47 ~~~dviIIG--aG~~GLsaA~~L~~~G~~V~vlE~~~~~G 84 (445)
...+|+||| +|..|+-+|..|++.|.+|+++++.+.+.
T Consensus 522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~ 561 (690)
T 3k30_A 522 DGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVS 561 (690)
T ss_dssp SSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccc
Confidence 346799999 99999999999999999999999876654
No 456
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=90.06 E-value=0.28 Score=44.06 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
...+++|||+|-+|-++|+.|.+.|. +|+|+.|+.
T Consensus 121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~ 156 (282)
T 3fbt_A 121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP 156 (282)
T ss_dssp TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 35689999999999999999999998 899998763
No 457
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=89.99 E-value=0.34 Score=41.43 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=29.3
Q ss_pred cEEEECC-CHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 50 RVIVIGA-GLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 50 dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+|+|+|| |..|...+..|.++|++|+++.|+.
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 5999996 9999999999999999999998863
No 458
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=89.95 E-value=0.33 Score=43.68 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
....++|+|||-+|-++|+.|++.|. +|+|+.|+
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~ 160 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence 35689999999999999999999998 69999876
No 459
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=89.93 E-value=0.43 Score=44.99 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=32.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 46 ERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 46 ~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
.....|.|||+|-.|...|..+.+.|++|.+++..+.
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~ 46 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED 46 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3457899999999999999999999999999987643
No 460
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=89.88 E-value=0.21 Score=45.37 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.+||-|..|..-|..|.++|++|++++++.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~ 38 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA 38 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999764
No 461
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=89.81 E-value=0.37 Score=43.89 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=31.8
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+..|+|.|| |..|...+..|.++|++|+++.++..
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 467999999 99999999999999999999988654
No 462
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=89.74 E-value=0.34 Score=43.52 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
....++|||+|-+|-++|+.|++.|. +|+|+.|+
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~ 159 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRT 159 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence 35689999999999999999999996 89999875
No 463
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=89.73 E-value=0.36 Score=44.68 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=30.9
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 47 RKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 47 ~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
+...|+|.|| |..|...+..|.++|++|+++.++..
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~ 54 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS 54 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 4568999998 99999999999999999999998754
No 464
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=89.55 E-value=0.49 Score=40.55 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=29.7
Q ss_pred CcEEEECC-CHHHHHHHHHHH-HCCCCEEEEecCCC
Q 042352 49 DRVIVIGA-GLAGLAAATRLH-SQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGa-G~~GLsaA~~L~-~~G~~V~vlE~~~~ 82 (445)
..|+|.|| |-.|...|..|+ ++|++|+++.|+..
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~ 41 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK 41 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 34999995 999999999999 89999999998643
No 465
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=89.54 E-value=0.19 Score=45.43 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
.+|.|||+|..|...|..|.+.|++|++++ +.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~ 35 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG 35 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence 479999999999999999999999999998 53
No 466
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=89.52 E-value=0.39 Score=47.28 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=37.4
Q ss_pred CCcEEeCceeeEEEecCC--CcCeEEeC--CC-----ceEEeccEEEEcCChhHHhh
Q 042352 260 FESILLNTRVLSIDFDEQ--NMPNVRLA--NG-----ETLKSEIGVILAVEEPEADK 307 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~~--~~~~V~~~--~g-----~~i~a~~~VV~a~~~~~~~~ 307 (445)
+++|++++.|++|..+++ ++++|++. +| .+++|+ .||+|++.....+
T Consensus 236 n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~-~VIlaaG~~~s~~ 291 (504)
T 1n4w_A 236 KVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTE 291 (504)
T ss_dssp SEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHH
T ss_pred CcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeC-EEEEccCCCCCHH
Confidence 589999999999998853 46788874 56 358898 7999999976544
No 467
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=89.49 E-value=0.27 Score=43.66 Aligned_cols=30 Identities=37% Similarity=0.362 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEec
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGRPFVLLEA 79 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~~V~vlE~ 79 (445)
+|.|||+|..|...|..|++.|++|+++++
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~ 31 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE 31 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence 599999999999999999999999999876
No 468
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=89.48 E-value=0.26 Score=44.54 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...++|+|+|-.|.++|..|++.| +|+|+.|+
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~ 159 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT 159 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred CCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence 467999999999999999999999 99999875
No 469
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=89.45 E-value=0.41 Score=42.44 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCCcEEEECC-C-HHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGA-G-LAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGa-G-~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+...++|.|| | -.|...|..|+++|++|+++.++.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~ 57 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE 57 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence 4567999998 7 499999999999999999998763
No 470
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=89.45 E-value=0.37 Score=45.87 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=31.9
Q ss_pred ccccCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEe
Q 042352 41 LNSKLERKDRVIVIGAGLAGLAAATRLHSQGRPFVLLE 78 (445)
Q Consensus 41 ~~~~~~~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE 78 (445)
.+..|+....|.|+|+|-.|...+..+.+.|++|.+++
T Consensus 17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 17 FQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp ----CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred EeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 34455667899999999999999999999999999999
No 471
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=89.35 E-value=0.39 Score=41.19 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=29.0
Q ss_pred cEEEECC-CHHHHHHHHHHHHCCCCEEEEecC
Q 042352 50 RVIVIGA-GLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 50 dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
+|+|.|| |..|...|..|.++|++|.++.|+
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 5999998 999999999999999999999875
No 472
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A
Probab=89.23 E-value=0.3 Score=47.25 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...|+|+|+|-.|...|..|++.|++|++++++
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~ 35 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT 35 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECC
Confidence 457999999999999999999999999999875
No 473
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=89.14 E-value=0.42 Score=43.58 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
....++|+|||-+|-++|+.|++.|. +|+|+.|+
T Consensus 147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt 181 (312)
T 3t4e_A 147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK 181 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 34689999999999999999999998 79999886
No 474
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=89.12 E-value=0.4 Score=43.12 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=30.4
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAG-LAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG-~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...+++|||+| +.|..+|..|.+.|.+|+|+.+.
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~ 198 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 198 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence 45789999999 68999999999999999999743
No 475
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=89.08 E-value=0.32 Score=47.22 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--------------------CC-CEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQ--------------------GR-PFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~--------------------G~-~V~vlE~~~~ 82 (445)
..+|+|||+|.+|+-+|..|++. |. +|+|+++.+.
T Consensus 147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~ 202 (456)
T 1lqt_A 147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 202 (456)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence 46899999999999999999974 54 8999988654
No 476
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=89.07 E-value=0.36 Score=46.15 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEe
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR---PFVLLE 78 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~---~V~vlE 78 (445)
...+|+|+|||-+|.++|..|.+.|. +|+|++
T Consensus 185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd 219 (439)
T 2dvm_A 185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE 219 (439)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence 45689999999999999999999998 899999
No 477
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=89.06 E-value=0.36 Score=44.06 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 50 RVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 50 dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
+|+|||||..|.+.|+.|+..|+ .|.++|.+.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~ 33 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP 33 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence 48999999999999999999888 699999763
No 478
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=89.03 E-value=0.33 Score=47.58 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~ 81 (445)
+..+|.|||.|-+|++ +|..|.+.|++|++.|...
T Consensus 18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~ 53 (491)
T 2f00_A 18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP 53 (491)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 3457999999999998 8899999999999999765
No 479
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=88.94 E-value=0.39 Score=42.60 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=30.8
Q ss_pred CCCCcEEEECCC-HHHHHHHHHHHHCCCCEEEEecC
Q 042352 46 ERKDRVIVIGAG-LAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 46 ~~~~dviIIGaG-~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
-...+++|||+| +.|..+|..|.+.|.+|+++.++
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~ 183 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK 183 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence 356899999976 79999999999999999999763
No 480
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=88.91 E-value=0.44 Score=42.57 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
..+++|||+|-+|-++|+.|.+.|. +|+|+.|+
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt 152 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN 152 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3579999999999999999999997 89999875
No 481
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=88.88 E-value=0.4 Score=45.03 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=30.8
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..|+|.|| |..|...+..|.++|++|+++.++..
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~ 63 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS 63 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence 57999998 99999999999999999999988653
No 482
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=88.85 E-value=0.42 Score=42.97 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=30.2
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGA-GLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
...+++|||+ |+.|..+|..|.+.|.+|+++.++
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~ 198 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG 198 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4689999996 568999999999999999999874
No 483
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=88.75 E-value=0.44 Score=43.84 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
..+|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 5689999999999999999999997 79999874
No 484
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=88.74 E-value=0.48 Score=43.22 Aligned_cols=34 Identities=15% Similarity=0.395 Sum_probs=30.7
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 49 DRVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 49 ~dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..|+|+|| |..|...+..|.++|++|+++.|+..
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence 46999996 99999999999999999999998754
No 485
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=88.73 E-value=0.48 Score=47.08 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=42.0
Q ss_pred HHHHHHhcCCCCcEEeCceeeEEEecCCCcCeEEeCC---Cc--eE---EeccEEEEcCChhHHhhhc
Q 042352 250 IPNQIASKLPFESILLNTRVLSIDFDEQNMPNVRLAN---GE--TL---KSEIGVILAVEEPEADKLL 309 (445)
Q Consensus 250 l~~~l~~~l~g~~i~~n~~V~~I~~~~~~~~~V~~~~---g~--~i---~a~~~VV~a~~~~~~~~ll 309 (445)
+.+.+.+. ++++|++++.|++|..+++++++|++.+ |+ ++ .++ .||+|++.....+|+
T Consensus 201 ~l~~~~~~-~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~-~VIlaaG~~~sp~lL 266 (546)
T 1kdg_A 201 YLQTALAR-PNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKG-RVILSAGAFGTSRIL 266 (546)
T ss_dssp HHHHHHTC-TTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEE-EEEECSHHHHHHHHH
T ss_pred HHHHHhhC-CCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCC-EEEEcCChhcCHHHH
Confidence 44444432 2889999999999998876778888865 64 23 565 799999997654443
No 486
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=88.71 E-value=0.46 Score=46.28 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
....|+|||+|..|..+|..|...|.+|+++|++.
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~ 307 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP 307 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999999999999999999999999999764
No 487
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=88.60 E-value=0.52 Score=42.57 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=30.9
Q ss_pred cEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCCC
Q 042352 50 RVIVIGA-GLAGLAAATRLHSQGRPFVLLEASDAV 83 (445)
Q Consensus 50 dviIIGa-G~~GLsaA~~L~~~G~~V~vlE~~~~~ 83 (445)
+|+|.|| |..|-..+..|.++|++|+++-|++..
T Consensus 2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~ 36 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP 36 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 5999998 999999999999999999999886544
No 488
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=88.56 E-value=0.38 Score=43.74 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
+.+|.+||=|..|..-|..|.++|++|++++++.
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~ 36 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 3579999999999999999999999999999864
No 489
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=88.54 E-value=0.51 Score=44.82 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~ 81 (445)
....|+|||.|..|..+|..|...|.+|+++|+++
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp 253 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP 253 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 45789999999999999999999999999999764
No 490
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=88.53 E-value=0.33 Score=43.81 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
..+|+|||+|-.|..+|.+|++.|. +++|+|..
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D 69 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD 69 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999997 89999874
No 491
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=88.42 E-value=0.42 Score=43.97 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR--PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~--~V~vlE~~ 80 (445)
..+|+|||||-.|.+.|+.|+..+. .+.++|.+
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~ 43 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 4689999999999999999998876 78899864
No 492
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=88.36 E-value=0.41 Score=42.21 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEAS 80 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~ 80 (445)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4689999999999999999999997 78999874
No 493
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=88.34 E-value=0.55 Score=43.82 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
....|+|+|+|-.|..+|..|.+.|.+|++.|.+
T Consensus 172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~ 205 (364)
T 1leh_A 172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN 205 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999864
No 494
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=88.33 E-value=0.39 Score=45.70 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLAAATRLHSQGR-PFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLsaA~~L~~~G~-~V~vlE~~~ 81 (445)
....|+|||+|-.|..+|..|...|. +|++++++.
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~ 201 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 201 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 34679999999999999999999998 899998764
No 495
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=88.32 E-value=0.53 Score=43.47 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
...|.|||.|-.|...|..|+..|++|++++++..
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~ 184 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK 184 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence 45799999999999999999999999999998654
No 496
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=88.31 E-value=0.54 Score=42.38 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=30.8
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEecC
Q 042352 47 RKDRVIVIG-AGLAGLAAATRLHSQGRPFVLLEAS 80 (445)
Q Consensus 47 ~~~dviIIG-aG~~GLsaA~~L~~~G~~V~vlE~~ 80 (445)
....++|+| +|-.|.++|..|++.|.+|+++.|+
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~ 152 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK 152 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence 346799999 9999999999999999999999875
No 497
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}
Probab=88.00 E-value=0.092 Score=44.74 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Q 042352 48 KDRVIVIGAGLAGLAAATRLHSQGRPFVLLEASDA 82 (445)
Q Consensus 48 ~~dviIIGaG~~GLsaA~~L~~~G~~V~vlE~~~~ 82 (445)
..+|.|||+|-.|...|..|.+.|++|++++++..
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~ 53 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ 53 (201)
Confidence 34699999999999999999999999999987643
No 498
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=88.21 E-value=0.35 Score=47.21 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCCEEEEecCC
Q 042352 47 RKDRVIVIGAGLAGLA-AATRLHSQGRPFVLLEASD 81 (445)
Q Consensus 47 ~~~dviIIGaG~~GLs-aA~~L~~~G~~V~vlE~~~ 81 (445)
+..+|.|||.|-+|++ +|..|.+.|++|++.|...
T Consensus 17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~ 52 (475)
T 1p3d_A 17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 52 (475)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 3457999999999998 8899999999999999865
No 499
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=88.19 E-value=0.52 Score=46.39 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=38.0
Q ss_pred CCcEEeCceeeEEEecC-C-CcCeEEeC--CC-----ceEEeccEEEEcCChhHHhhh
Q 042352 260 FESILLNTRVLSIDFDE-Q-NMPNVRLA--NG-----ETLKSEIGVILAVEEPEADKL 308 (445)
Q Consensus 260 g~~i~~n~~V~~I~~~~-~-~~~~V~~~--~g-----~~i~a~~~VV~a~~~~~~~~l 308 (445)
+++|++++.|++|..++ + ++++|++. +| .+++|+ .||+|++.....+|
T Consensus 241 n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~-~VIlaaGa~~sp~l 297 (507)
T 1coy_A 241 KLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKL 297 (507)
T ss_dssp CEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHH
T ss_pred CcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeC-EEEEccCccCCHHH
Confidence 58999999999999886 3 46788874 56 258898 79999999865443
No 500
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=88.16 E-value=0.3 Score=48.05 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=29.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--------------CCCEEEEecCCCC
Q 042352 49 DRVIVIGAGLAGLAAATRLHSQ--------------GRPFVLLEASDAV 83 (445)
Q Consensus 49 ~dviIIGaG~~GLsaA~~L~~~--------------G~~V~vlE~~~~~ 83 (445)
..++|||||++|+-.|..|++. ..+|+++|+.+++
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i 266 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV 266 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence 3699999999999999988753 3689999987664
Done!