Query 042357
Match_columns 455
No_of_seqs 290 out of 1583
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 100.0 1.9E-62 4.1E-67 455.2 23.7 321 108-448 21-363 (370)
2 KOG1092 Ypt/Rab-specific GTPas 100.0 1.1E-48 2.3E-53 376.4 17.3 289 102-448 168-476 (484)
3 KOG2223 Uncharacterized conser 100.0 1.6E-48 3.4E-53 375.0 15.2 319 63-454 236-564 (586)
4 KOG2058 Ypt/Rab GTPase activat 100.0 1.1E-43 2.3E-48 353.3 20.7 250 110-445 144-397 (436)
5 KOG1091 Ypt/Rab-specific GTPas 100.0 6E-40 1.3E-44 325.9 18.8 290 129-446 29-363 (625)
6 smart00164 TBC Domain in Tre-2 100.0 3.8E-39 8.3E-44 298.6 17.1 197 119-393 1-198 (199)
7 COG5210 GTPase-activating prot 100.0 3.8E-35 8.3E-40 306.8 21.6 235 108-421 198-433 (496)
8 PF00566 RabGAP-TBC: Rab-GTPas 100.0 3.1E-34 6.6E-39 268.2 21.7 169 223-415 44-214 (214)
9 KOG1093 Predicted protein kina 100.0 4.5E-33 9.7E-38 277.0 17.8 206 226-451 391-596 (725)
10 KOG2222 Uncharacterized conser 100.0 8.5E-32 1.8E-36 261.9 17.5 256 108-446 155-419 (848)
11 KOG2224 Uncharacterized conser 100.0 5.8E-29 1.3E-33 239.8 16.4 285 108-448 420-732 (781)
12 KOG4347 GTPase-activating prot 100.0 1.5E-29 3.3E-34 256.2 10.9 253 108-446 188-458 (671)
13 KOG2595 Predicted GTPase activ 99.9 1.3E-27 2.8E-32 225.3 13.9 203 226-448 97-303 (395)
14 KOG4436 Predicted GTPase activ 99.9 1.6E-25 3.5E-30 230.3 19.2 198 224-443 620-824 (948)
15 KOG2197 Ypt/Rab-specific GTPas 99.9 9.8E-26 2.1E-30 231.8 8.0 264 119-446 174-442 (488)
16 KOG1102 Rab6 GTPase activator 99.9 3.3E-25 7.3E-30 223.9 11.6 184 226-431 186-369 (397)
17 KOG2221 PDZ-domain interacting 99.8 1.8E-21 4E-26 173.3 0.5 176 110-368 91-267 (267)
18 KOG3636 Uncharacterized conser 99.7 7.6E-16 1.7E-20 150.2 14.7 178 252-450 90-276 (669)
19 KOG4436 Predicted GTPase activ 99.7 1.4E-15 3.1E-20 157.5 15.1 259 108-443 170-438 (948)
20 KOG2801 Probable Rab-GAPs [Int 99.0 1.1E-08 2.4E-13 95.9 13.9 177 252-446 109-294 (559)
21 KOG1648 Uncharacterized conser 98.5 3.1E-09 6.7E-14 105.6 -7.0 279 76-440 512-797 (813)
22 PF14961 BROMI: Broad-minded p 96.7 0.023 5.1E-07 63.6 13.7 170 258-441 1087-1273(1296)
23 KOG2197 Ypt/Rab-specific GTPas 77.6 1.6 3.4E-05 45.9 2.5 51 114-166 69-121 (488)
24 KOG2224 Uncharacterized conser 72.6 1.5 3.2E-05 44.2 0.7 21 298-318 555-575 (781)
25 PHA00680 hypothetical protein 26.4 2.7E+02 0.0059 22.4 6.1 72 332-405 30-101 (143)
26 PF08109 Antimicrobial14: Lact 24.9 49 0.0011 19.7 1.3 16 271-286 3-18 (31)
27 PF12854 PPR_1: PPR repeat 21.4 1.5E+02 0.0033 18.4 3.3 31 357-387 2-32 (34)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.9e-62 Score=455.18 Aligned_cols=321 Identities=49% Similarity=0.888 Sum_probs=291.4
Q ss_pred ccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCC
Q 042357 108 KEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQN 187 (455)
Q Consensus 108 ~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (455)
..+|.++||++|..|+|+..++|+.+|+++||++|++.+.|...+.++|..|.++.++....|...... .+.
T Consensus 21 ~~id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~-------~~v- 92 (370)
T KOG4567|consen 21 DTIDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNS-------KKV- 92 (370)
T ss_pred chhhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccc-------ccc-
Confidence 359999999999999998767999999999999999999999999999999999999987766532110 000
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhh----------------
Q 042357 188 ADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSR---------------- 251 (455)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~---------------- 251 (455)
.+..+..+||++.+..|.|+++|++.+.+.||++||.||+|+..+|+...+.++
T Consensus 93 ----------~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~ 162 (370)
T KOG4567|consen 93 ----------DSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEA 162 (370)
T ss_pred ----------ccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHh
Confidence 011246799999999999999999999999999999999999999998765431
Q ss_pred ------HHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 042357 252 ------KNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDN 325 (455)
Q Consensus 252 ------~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~ 325 (455)
-......|||++||+.||.+|||||||+|+||+++|+..|++.++..++|+|||.||..||..++++|+..+|.
T Consensus 163 ~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDd 242 (370)
T KOG4567|consen 163 GRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDD 242 (370)
T ss_pred hhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 12234589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 042357 326 SSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCA 405 (455)
Q Consensus 326 ~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lA 405 (455)
+..||...+..+..+|+.+|-+||+||+.. ++.|++|++||+.+|++.+||+++++||||.++++..+ ..+++++|+|
T Consensus 243 S~~GI~~~Msr~~~~lk~~D~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcs 320 (370)
T KOG4567|consen 243 SVGGIHFLMSRLSELLKKHDEELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCS 320 (370)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHH
Confidence 999999999999999999999999999986 99999999999999999999999999999999998765 4999999999
Q ss_pred HHHHhhHhhhcCCHHHHHHHHhCCCCCCHHHHHHHHhhcCccc
Q 042357 406 MLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDLSPDT 448 (455)
Q Consensus 406 iL~~~~~~Ll~~d~~~il~~L~~~p~~d~~~Ll~~A~~l~~~~ 448 (455)
||...|+.|++.||...+++||++|++|+.+++..|.+|+...
T Consensus 321 mlil~Re~il~~DF~~nmkLLQ~yp~tdi~~~l~~A~~Lr~~k 363 (370)
T KOG4567|consen 321 MLILVRERILEGDFTVNMKLLQNYPTTDISKMLAVADSLRDKK 363 (370)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998643
No 2
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-48 Score=376.45 Aligned_cols=289 Identities=32% Similarity=0.555 Sum_probs=261.3
Q ss_pred ccccccccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcccc
Q 042357 102 SDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVS 181 (455)
Q Consensus 102 ~~~~~~~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~ 181 (455)
+.+..+..+|.++||++||.|||.. .|+.+|++++|++|.+....+..++.++..|..++.++......
T Consensus 168 ~~~~~~~~id~~~Lr~l~w~Gvp~~--~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~--------- 236 (484)
T KOG1092|consen 168 GSILDSPIIDLEKLRKLCWNGVPSK--MRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTN--------- 236 (484)
T ss_pred cccCCcccccHHHHHHHccCCCCcc--ccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCC---------
Confidence 3344568999999999999999999 99999999999999999999999999999999999988653221
Q ss_pred ccCCCCCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHH
Q 042357 182 NYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNIL 261 (455)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL 261 (455)
.-.+.++.+||..|++||.|+.++|+.+ ..++.+.|||
T Consensus 237 -------------------------------------~~~~~d~~rQI~id~prm~p~~~l~q~~-----~vq~~lerIl 274 (484)
T KOG1092|consen 237 -------------------------------------GDEDQDTWRQIPIDIPRMNPHIPLFQQK-----IVQEMLERIL 274 (484)
T ss_pred -------------------------------------ccccCccccccccCCCCCCccccchhhH-----HHHHHHHHHH
Confidence 0012345789999999999999999998 9999999999
Q ss_pred HHHHHhCCCCCCCCCchhhHHHHHHHhcCCC---------------chhhhhhhhHHHHHHHHHHHcCCcccccccccCC
Q 042357 262 LLFAKLNPVIRYVQGMNEVLAPMYYVFSTDP---------------DEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNS 326 (455)
Q Consensus 262 ~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~---------------~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~ 326 (455)
+.|+.++|..||+||.|+++.+++.++..+. ..++...+|+|||||+.+|+..++++|.. .
T Consensus 275 ~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtf----a 350 (484)
T KOG1092|consen 275 YIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTF----A 350 (484)
T ss_pred HHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhh----c
Confidence 9999999999999999999999998875311 12466889999999999999999999976 7
Q ss_pred hhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 042357 327 SGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAM 406 (455)
Q Consensus 327 ~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAi 406 (455)
++||+...+.++.+++..|+.+|+||+.+ |++-..|++||+.|||.|+||+..++|+||.|+++++|+..|++|||+|+
T Consensus 351 QpGIq~kV~~L~eLv~RID~~~hkHlq~~-gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAF 429 (484)
T KOG1092|consen 351 QPGIQRKVKNLKELVQRIDEPLHKHLQEH-GVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAF 429 (484)
T ss_pred ChhHHHHHHHHHHHHHHhcHHHHHHHHHh-chHHHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccchHHHHHHHHHHH
Confidence 89999999999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhhhcCCHHHHHHHHhCCCC-----CCHHHHHHHHhhcCccc
Q 042357 407 LLCMKNRLLSGDFVANLQLLQHYPD-----VNIEHLLQVARDLSPDT 448 (455)
Q Consensus 407 L~~~~~~Ll~~d~~~il~~L~~~p~-----~d~~~Ll~~A~~l~~~~ 448 (455)
|..++++|+++||.+++.+||++|. -+++.|+..|+.+..-+
T Consensus 430 L~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f 476 (484)
T KOG1092|consen 430 LLKWSSELMENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVF 476 (484)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 36999999998876543
No 3
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.6e-48 Score=375.01 Aligned_cols=319 Identities=22% Similarity=0.389 Sum_probs=265.0
Q ss_pred hhHHHhhhhhhhhhhhcCcccc--CCCccchhhh--hhhhhccccc--cccccCCHHHHHHHHhcCCCCCCCChHHHHHH
Q 042357 63 DDYVEMMEEHFESRVRRNPKKY--GSRLVSVKEV--IAADDKRSDL--EYEKEINLEKLQRIADTGLPDGGGLRATAWKL 136 (455)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~--~~~~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~ 136 (455)
.||.+|++.|++.++++++.+. ......+++. .+...|...| +|+.+.+..++|.+||.|||+. +|+.||.+
T Consensus 236 qeyeei~~qAkkre~k~~ker~k~~eer~r~ee~~~~~v~vW~~eILpnWe~m~~SrR~relWwQGiP~~--VRGkvW~l 313 (586)
T KOG2223|consen 236 QEYEEIVKQAKKRERKEAKERKKMVEERNRLEERIAYAVNVWENEILPNWEDMLKSRRVRELWWQGIPPS--VRGKVWSL 313 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccchHHHHhhHHHHHHHHccCChh--hcchhhHh
Confidence 4688899999998887775422 1222222232 3335677666 5789999999999999999999 99999999
Q ss_pred HhCC-CCCChhhHHHHHHHHHHH-HHHHHHHHhcCcchhhhhhccccccCCCCCCCCCCCcccccccccCCCCCCCCCCc
Q 042357 137 LLGY-LPSCRDLWEKELTENRQK-YLKLKEELLLRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKAS 214 (455)
Q Consensus 137 LLg~-l~~~~~~~~~~l~~~~~~-Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~~~s 214 (455)
.+|+ +....+.+...+.+..+. ...+.++.-. + +
T Consensus 314 aIGNel~it~elfd~~la~Aker~ak~~aeq~~~-----------s---a------------------------------ 349 (586)
T KOG2223|consen 314 AIGNELNITYELFDIALARAKEREAKSLAEQMSN-----------S---A------------------------------ 349 (586)
T ss_pred hhCcccccCHHHHHHHHHHHHHHHHHHHHhhccc-----------c---h------------------------------
Confidence 9998 777777777777666555 4444332110 0 0
Q ss_pred chhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCch
Q 042357 215 VWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDE 294 (455)
Q Consensus 215 ~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~ 294 (455)
.+.+..+.+|+.|+.||||++.+|+.++ +.++.|..||.||++|+|++||+|||.+|+|+|++.++
T Consensus 350 -----~~re~sv~~i~LDisrTfpsl~iFqk~G----Py~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd----- 415 (586)
T KOG2223|consen 350 -----ADREASVELIKLDISRTFPSLSIFQKGG----PYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMD----- 415 (586)
T ss_pred -----hhhhcchhheeechhccCcceeeeccCC----chHHHHHHHhhhheeecCccccccchHHHHHHHHHcCC-----
Confidence 0123457899999999999999999987 89999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHcCCcc-cccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhc
Q 042357 295 QNAENAEADSFSCFVRLLSDSVD-HFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLT 373 (455)
Q Consensus 295 ~~~~~~E~daF~~f~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~ 373 (455)
+++||.||.+|+++... .|+ ..+.+.+..++..|+..+++..|+|+.||.+. .+.|++|++.|+.++|+
T Consensus 416 ------~~~AFiafANLLdkp~q~Aff---~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl-~l~PDiylidwiftlys 485 (586)
T KOG2223|consen 416 ------LADAFIAFANLLDKPCQQAFF---RVDHSSMLSYFATFEVFLEENLPKLFTHLKKL-ELTPDIYLIDWIFTLYS 485 (586)
T ss_pred ------cHHHHHHHHHHhccHHHHHHH---hcCcHHHHHHHHHHHHHHHhccHHHHHHHHhc-cCCCchhhHHHHHHHHh
Confidence 89999999999998543 232 23567889999999999999999999999985 99999999999999999
Q ss_pred ccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhcCCHHHHHHHHhCCCC-CCHHHHHHHHhhcCcccCCCC
Q 042357 374 QEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPD-VNIEHLLQVARDLSPDTSSCS 452 (455)
Q Consensus 374 ~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~~d~~~il~~L~~~p~-~d~~~Ll~~A~~l~~~~~~~~ 452 (455)
..+|++.++||||+|+.+|+ +|+++.+++||+.+++.|+.+||..+.++|.++|. +..+.++.....+..+.++++
T Consensus 486 kslpldlacRIwDvy~rdge---eFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~sr~kk 562 (586)
T KOG2223|consen 486 KSLPLDLACRIWDVYCRDGE---EFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQSRSKK 562 (586)
T ss_pred ccCChHHhhhhhheeeecch---HHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhhhchh
Confidence 99999999999999999999 99999999999999999999999999999999998 777777766666666676666
Q ss_pred CC
Q 042357 453 LS 454 (455)
Q Consensus 453 ~~ 454 (455)
|+
T Consensus 563 ws 564 (586)
T KOG2223|consen 563 WS 564 (586)
T ss_pred HH
Confidence 64
No 4
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-43 Score=353.34 Aligned_cols=250 Identities=27% Similarity=0.416 Sum_probs=214.4
Q ss_pred CCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCCCC
Q 042357 110 INLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNAD 189 (455)
Q Consensus 110 i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (455)
.-.++|++++++|||+. +|+.||..+.|... ....+..|+.+...-..
T Consensus 144 ~~s~elk~liRkGiP~~--~R~~VW~~~~g~~~---------~~~~~~~yq~ll~~~~~--------------------- 191 (436)
T KOG2058|consen 144 PRSDELKRLIRKGIPPE--LRGEVWWVLSGARR---------QLNYPGYYQELLRKGDE--------------------- 191 (436)
T ss_pred CCcHHHHHHHHcCCChh--hhhHHHHHHhcchh---------hccCchhHHHHHhcCCC---------------------
Confidence 44678999999999999 99999999999311 01115677776543100
Q ss_pred CCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCC-cCCCCcchhhhHHHHHHHHHHHHHHHhC
Q 042357 190 NDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDM-KFFSGDAAFSRKNREAMRNILLLFAKLN 268 (455)
Q Consensus 190 ~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~-~~F~~~~~~~~~~~~~L~rIL~~y~~~~ 268 (455)
+...+.+||+.|+.||||++ +.|..+++ .++..|+|||.||+++|
T Consensus 192 -------------------------------~~~~~~~qI~~DL~RTfP~n~~~~~~~~~---~~~~~LrRvL~Aya~hN 237 (436)
T KOG2058|consen 192 -------------------------------KKSPVVKQIKLDLPRTFPDNFKGFDSEDS---DGRQTLRRVLLAYARHN 237 (436)
T ss_pred -------------------------------ccchHHHHHHhccccccCCCcccCCCCCc---hHHHHHHHHHHHHHhhC
Confidence 11246899999999999999 89998876 77999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHhhcHHH
Q 042357 269 PVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEEL 348 (455)
Q Consensus 269 p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L 348 (455)
|.||||||||++||++|+++++ |++|||||+.+++++.+.| +.+++.|.+....+|..+++..+|+|
T Consensus 238 p~vGYCQGmNflAallLL~~~~----------EE~AFW~Lv~iie~~lp~Y---yt~nL~g~qvDQ~VL~~llre~lPkl 304 (436)
T KOG2058|consen 238 PSVGYCQGMNFLAALLLLLMPS----------EEDAFWMLVALIENYLPRY---YTPNLIGSQVDQKVLRELLREKLPKL 304 (436)
T ss_pred CCCcchhhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHHhchhh---cCchhhhhhccHHHHHHHHHHHCHHH
Confidence 9999999999999999999998 9999999999999988776 45588999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhc-CCHHHHHHHHh
Q 042357 349 WRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLS-GDFVANLQLLQ 427 (455)
Q Consensus 349 ~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~-~d~~~il~~L~ 427 (455)
+.||... +++..+++++||+|+|+..+|.++++||||++|++|. ++++++|+|++...+++|+. .+..++++++.
T Consensus 305 ~~~l~~~-~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGs---kvlfr~Alai~k~~ee~il~~~~~~~i~~~~~ 380 (436)
T KOG2058|consen 305 SLHLEGN-GVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGS---KVLFRVALAILKKHEEEILKEDSSKEILRVLP 380 (436)
T ss_pred HHhhhhc-CCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHH
Confidence 9999996 9999999999999999999999999999999999998 99999999999999999997 55678888887
Q ss_pred CCCC--CCHHHHHHHHhhcC
Q 042357 428 HYPD--VNIEHLLQVARDLS 445 (455)
Q Consensus 428 ~~p~--~d~~~Ll~~A~~l~ 445 (455)
.+.. ++.+ +.|....
T Consensus 381 ~~~~~~~~~~---~~~f~~~ 397 (436)
T KOG2058|consen 381 DLTKRSIDPD---QDAFGLA 397 (436)
T ss_pred HHHHHhhhhh---hhhhhcc
Confidence 7766 3333 5554443
No 5
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-40 Score=325.93 Aligned_cols=290 Identities=31% Similarity=0.555 Sum_probs=247.1
Q ss_pred ChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCCCCCCCCCcccccccccCCCCC
Q 042357 129 LRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPL 208 (455)
Q Consensus 129 ~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 208 (455)
+|+.+|+++||++|.+.+.|...+++.+..|..+.+.++.+|...... -++....++||
T Consensus 29 ~Rgv~Wrl~L~vLp~~~ss~id~~~~~ra~~r~~r~~~L~dPh~~k~~---------------------~s~d~~idnPL 87 (625)
T KOG1091|consen 29 LRGVRWRLLLGVLPSENSSWIDNLRRLRANYRRLRRRLLIDPHNLKEN---------------------HSPDLPIDNPL 87 (625)
T ss_pred hhhHHHHHhheecCCCchhHHHHHHHHhhhhhccccccccCccccccc---------------------cCCCcccCCcc
Confidence 999999999999999999999999999999999999888887753211 01233478999
Q ss_pred CCCCCcchhhccchHHHHHHHHHhhcccCCCC-cCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHH
Q 042357 209 SSGKASVWHQYFQHIEIAEQIDRDLQRTHPDM-KFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYV 287 (455)
Q Consensus 209 s~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~-~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~ 287 (455)
|.+..|.|+++|.+.+..+.|+.||.||||++ .+|+.+ ..+..|+|||..||..||.+||.||||++.||+++|
T Consensus 88 Sq~~~S~W~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~-----~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fV 162 (625)
T KOG1091|consen 88 SQNPQSVWNRFFRDAELEKTIDQDVSRTFPEHSLFFQSP-----EVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFV 162 (625)
T ss_pred ccCCCchhhhhcCcHHHHHhhcchhhccCcchhhhhcCc-----hhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999 899988 899999999999999999999999999999999999
Q ss_pred hcCCCch--------------------hhhhhhhHHHH--HHHHHHHcCCcccc------------------c--ccccC
Q 042357 288 FSTDPDE--------------------QNAENAEADSF--SCFVRLLSDSVDHF------------------C--QQLDN 325 (455)
Q Consensus 288 ~~~d~~~--------------------~~~~~~E~daF--~~f~~l~~~~~~~~------------------~--~~~~~ 325 (455)
...|.+. .+..|.+.+++ -+|+.+|..-...| + ..+..
T Consensus 163 l~~D~q~l~h~se~~~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~ 242 (625)
T KOG1091|consen 163 LHVDNQALLHVSESLFDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMP 242 (625)
T ss_pred eehhHHHHHHHHHhhhhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcc
Confidence 8766532 14466777777 57777765321111 1 11222
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHH-HHhcCCCCchhHHHHHHH
Q 042357 326 SSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWD-TLLSNPFGIQHMLLRVCC 404 (455)
Q Consensus 326 ~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD-~~l~~g~~~~~~l~~i~l 404 (455)
+.+.+......+..+|...|+.||.||.+. +|.|++|.+||++.||.|+||+.+++.+|| +++++++ ...++.|+++
T Consensus 243 ~l~~v~e~~~~~~~lL~~~D~~Lh~HL~~l-~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~p-r~~Lv~~m~V 320 (625)
T KOG1091|consen 243 GLPPVFEANFAQYHLLAKVDKSLHSHLVEL-GIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSP-RGILVACMFV 320 (625)
T ss_pred cchhHHHHhhhhhhhhhhccHHHHHHHHhc-CCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCc-hHHHHHHHHH
Confidence 334455566678899999999999999997 999999999999999999999999999999 7788765 3367889999
Q ss_pred HHHHHhhHhhhcCCHHHHHHHHhCCCC-CCHHHHHHHHhhcCc
Q 042357 405 AMLLCMKNRLLSGDFVANLQLLQHYPD-VNIEHLLQVARDLSP 446 (455)
Q Consensus 405 AiL~~~~~~Ll~~d~~~il~~L~~~p~-~d~~~Ll~~A~~l~~ 446 (455)
|||.++|+.|++.++..+++.|.+||. +|++.+|+.|..++.
T Consensus 321 smLL~IRd~Llss~~~tcL~~Lm~yP~~~Dv~~~iekAl~l~~ 363 (625)
T KOG1091|consen 321 SMLLYIRDSLLSSEYQTCLQYLMNYPEIIDVDKFIEKALHLQK 363 (625)
T ss_pred HHHHHHHHHHHHhcchhHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999 899999999998873
No 6
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=3.8e-39 Score=298.57 Aligned_cols=197 Identities=35% Similarity=0.643 Sum_probs=170.6
Q ss_pred HhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCCCCCCCCCcccc
Q 042357 119 ADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNADNDVDGPLRR 198 (455)
Q Consensus 119 ~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (455)
+++|||+. +|+.||+.++|+.+...+. .+..|.++.+.....
T Consensus 1 ~~~Gip~~--~R~~vW~~ll~~~~~~~~~-------~~~~Y~~l~~~~~~~----------------------------- 42 (199)
T smart00164 1 VRKGVPPS--LRGVVWKLLLNAQPMDTSA-------DKDLYSRLLKETAPK----------------------------- 42 (199)
T ss_pred CCCCCCHH--HHHHHHHHHhCCchhhhcc-------cchHHHHHHHhhcCC-----------------------------
Confidence 36899999 9999999999997654321 357888887653210
Q ss_pred cccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCch
Q 042357 199 QEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMN 278 (455)
Q Consensus 199 ~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGm~ 278 (455)
+.....+|++||+||+|++++|+...+ ..++.|.|||.+|+.+||++|||||||
T Consensus 43 -----------------------~~~~~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~~~~~~~p~~gY~QGm~ 96 (199)
T smart00164 43 -----------------------DKSIVHQIEKDLRRTFPEHSFFQDKEG---PGQESLRRVLKAYALYNPEVGYCQGMN 96 (199)
T ss_pred -----------------------ChhhHHHHhcccCCCCCCchhhcCCCc---ccHHHHHHHHHHHHHHCCCCceeccHH
Confidence 122468999999999999999997533 689999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHH-hcC
Q 042357 279 EVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEY-TNE 357 (455)
Q Consensus 279 ~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~-~~~ 357 (455)
+||++|+.++.+ |++|||||.++|+.....+ +..+..++...+..++.+|+.++|+||+||++ . +
T Consensus 97 ~i~~~ll~~~~~----------e~~af~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~-~ 162 (199)
T smart00164 97 FLAAPLLLVMPD----------EEDAFWCLVKLMERYGPNF---YLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKL-G 162 (199)
T ss_pred HHHHHHHHhcCC----------HHHHHHHHHHHHHHhCccc---CCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhc-C
Confidence 999999999976 9999999999999876655 34467789999999999999999999999996 6 8
Q ss_pred CCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCC
Q 042357 358 IKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPF 393 (455)
Q Consensus 358 i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~ 393 (455)
+++.+|+++|++|+|++++|++.++||||.++++|.
T Consensus 163 i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 163 IDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred CCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999874
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=3.8e-35 Score=306.82 Aligned_cols=235 Identities=32% Similarity=0.561 Sum_probs=198.4
Q ss_pred ccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCC
Q 042357 108 KEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQN 187 (455)
Q Consensus 108 ~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (455)
..+...+++.+++.|||+. +|+.||..++|+.+.. ......|..+.........
T Consensus 198 ~~~~~~~~~~~i~~gip~~--~r~~vw~~~~~~~~~~--------~~~~~~y~~~~~~~~~~~~---------------- 251 (496)
T COG5210 198 LPVQLSKLRELIRKGIPNE--LRGDVWEFLLGIGFDL--------DKNPGLYERLLNLHREAKI---------------- 251 (496)
T ss_pred hhhhHHHHHHHHHhcCChH--hhhhhHHHHhccchhh--------ccCchHHHHHHHHHHhcCC----------------
Confidence 4667889999999999999 9999999999986532 2234556665544321000
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 042357 188 ADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKL 267 (455)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~ 267 (455)
| ...+..+|++||.||+|++..|+...+ ...+.|+|||.+|+.+
T Consensus 252 -------------------~--------------~~~~~~~i~~Dl~rt~~~~~~f~~~~s---~~~~~L~rvL~ays~~ 295 (496)
T COG5210 252 -------------------P--------------TQEIISQIEKDLSRTFPDNSLFQTEIS---IRAENLRRVLKAYSLY 295 (496)
T ss_pred -------------------C--------------cHHHHHHHHccccccccccccccCccc---ccHHHHHHHHHHHHhc
Confidence 0 014579999999999999999998753 3334699999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcC-CcccccccccCChhhHHHHHHHHHHHHHhhcH
Q 042357 268 NPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSD-SVDHFCQQLDNSSGGILSTLSHLAELLKANDE 346 (455)
Q Consensus 268 ~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP 346 (455)
||++|||||||+|+++|+.++.. |++||||+++||.. ..+.+ +..++.|+...+..+..+++..+|
T Consensus 296 ~p~vgY~QgMn~l~a~ll~~~~~----------Ee~AF~~l~~L~~~~~l~~~---~~~~~~G~~~~~~~l~~~v~~~~p 362 (496)
T COG5210 296 NPEVGYVQGMNFLAAPLLLVLES----------EEQAFWCLVKLLKNYGLPGY---FLKNLSGLHRDLKVLDDLVEELDP 362 (496)
T ss_pred CCCCceeccHHHHHHHHHHHhhh----------hHHHHHHHHHHHHhccchhh---cccCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 99999999999993 23333 234789999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhcCCHHH
Q 042357 347 ELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVA 421 (455)
Q Consensus 347 ~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~~d~~~ 421 (455)
+||+||... ++...+|+++||+|+|.+++|++.++||||++|++|. .+++.+++|++...+..++.++...
T Consensus 363 ~l~~hl~~~-~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~---~~l~~~~~~~l~~~~~~l~~~~~~~ 433 (496)
T COG5210 363 ELYEHLLRE-GVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS---SMLFQLALAILKLLRDKLLKLDSDE 433 (496)
T ss_pred HHHHHHHHc-CCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhhhhhccCchh
Confidence 999999997 8999999999999999999999999999999999988 9999999999999999998765543
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=3.1e-34 Score=268.25 Aligned_cols=169 Identities=36% Similarity=0.709 Sum_probs=146.8
Q ss_pred HHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhH
Q 042357 223 IEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEA 302 (455)
Q Consensus 223 ~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~ 302 (455)
.+...+|++||.||+++...+..+ ..++.|.|||.+|+.++|++||+|||++|+++++.++.+ |+
T Consensus 44 ~~~~~~I~~Dv~rt~~~~~~~~~~-----~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~----------e~ 108 (214)
T PF00566_consen 44 NKIFEQIDKDVNRTFPNSFLFKNE-----QNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLD----------EE 108 (214)
T ss_dssp HTCHHHHHHHHCTSSTSCCCSTTH-----HHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSH----------HH
T ss_pred chHHHHHHHhhhhhcccchhhhhc-----chHHHHHHHHHHhccccccccccchhhhhhhhhhhhccc----------cc
Confidence 344789999999999966666666 899999999999999999999999999999999977765 99
Q ss_pred HHHHHHHHHHcC-CcccccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHH
Q 042357 303 DSFSCFVRLLSD-SVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPI 381 (455)
Q Consensus 303 daF~~f~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~ 381 (455)
+|||||++++.. ..+.| ..+..+++..+..++.+++.++|+|++||++. ++++..|+++|+.|+|++.+|.+.+
T Consensus 109 ~af~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~-~~~~~~~~~~w~~~lF~~~l~~~~~ 183 (214)
T PF00566_consen 109 EAFWCFVQLLNYYLPDFF----QPNFKGLQKILKIFEQLLKKHDPELYNHLKQL-GVDPEIYAFPWFLTLFSRSLPFDDV 183 (214)
T ss_dssp HHHHHHHHHHTHHGGGGT----STTHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-T-GGHHHHHHHHHTTTTTTS-HHHH
T ss_pred chhccccchhcccccccc----cccccccchhhhhHHHHHHhhhhhhhhhhhhh-hhhhhhhhhhhhHhhcCCcCCHHHH
Confidence 999999999943 33333 33667899999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhH-HHHHHHHHHHHhhHhhh
Q 042357 382 LRIWDTLLSNPFGIQHM-LLRVCCAMLLCMKNRLL 415 (455)
Q Consensus 382 ~riWD~~l~~g~~~~~~-l~~i~lAiL~~~~~~Ll 415 (455)
+|||| ++.+|+ .+ ++++|+|++...|++||
T Consensus 184 ~~lwD-~l~~g~---~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 184 LRLWD-FLLEGY---KFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp HHHHH-HHHHCT---THHHHHHHHHHHHHTHHHHH
T ss_pred HHHHH-HHHcCC---CcHHHHHHHHHHHHHHHHhC
Confidence 99999 666766 55 99999999999999986
No 9
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=100.00 E-value=4.5e-33 Score=277.01 Aligned_cols=206 Identities=27% Similarity=0.501 Sum_probs=190.8
Q ss_pred HHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHH
Q 042357 226 AEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSF 305 (455)
Q Consensus 226 ~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF 305 (455)
.+||+.|++|++....+.+.+ .+++.|+|+|.||+..+|...|.||+..+|+||++...+. |+.||
T Consensus 391 drqievdiprchQyd~~lsSp-----~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nn---------e~laF 456 (725)
T KOG1093|consen 391 DRQIEVDIPRCHQYDELLSSP-----KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNN---------ELLAF 456 (725)
T ss_pred hhhhhcccchhhhcccccCCH-----HHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCc---------hHHHH
Confidence 589999999999988888887 8999999999999999999999999999999999875432 99999
Q ss_pred HHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHH
Q 042357 306 SCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIW 385 (455)
Q Consensus 306 ~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riW 385 (455)
.|+..++-+++.+|+. .|+ ..-++..+..|.+++..+||+|++||..+ |+.|++||++||+|+|+++||.+.++.+|
T Consensus 457 ~~~~~fi~kycq~ffl-kdn-s~vikeyLs~f~~l~AfhDpeL~qHl~~~-~f~~eLyAiPwflT~Fshvlpl~kil~Lw 533 (725)
T KOG1093|consen 457 ACIATFIPKYCQHFFL-KDN-SNVIKEYLSMFSQLLAFHDPELLQHLIDI-GFIPELYAIPWFLTMFSHVLPLHKILHLW 533 (725)
T ss_pred HHHHHHHHHHHHHHHh-hcC-chhHHHHHHHHHHHHHhcCHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 9999999998877764 344 35688999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHhhHhhhcCCHHHHHHHHhCCCCCCHHHHHHHHhhcCcccCCC
Q 042357 386 DTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDLSPDTSSC 451 (455)
Q Consensus 386 D~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~~d~~~il~~L~~~p~~d~~~Ll~~A~~l~~~~~~~ 451 (455)
|.++..+. .|.+.+++|++.+.|+.|++++|.+++.++.+.|++|++.+++..+.++..+++.
T Consensus 534 D~lml~~~---SFplmi~vAil~~lR~~LLa~nfne~illf~d~pdldId~~Ires~~l~e~tP~s 596 (725)
T KOG1093|consen 534 DNLMLGHS---SFPLMIGVAILIQLRDPLLACNFNECILLFSDLPDLDIDVCIRESYHLMETTPKS 596 (725)
T ss_pred HHHhcCCC---ccHHHHHHHHHHHhhhhhhhCCchhheeeeccCCcccHHHHHHHHhhhhhCCCCC
Confidence 99999877 8999999999999999999999999999999999999999999999999887653
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.98 E-value=8.5e-32 Score=261.93 Aligned_cols=256 Identities=23% Similarity=0.394 Sum_probs=219.3
Q ss_pred ccCCHHHHHHHHhc-CCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCC
Q 042357 108 KEINLEKLQRIADT-GLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQ 186 (455)
Q Consensus 108 ~~i~~~~Lr~l~~~-GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (455)
.....++++.+.+. |||.. +|+..|+.|.|.+.. .+...-.|+..++..-.
T Consensus 155 ~~~ktdk~~~llkeggiphs--lr~~lw~rlsga~~k--------kk~ae~sy~~ilk~~an------------------ 206 (848)
T KOG2222|consen 155 MELKTDKFEELLKEGGIPHS--LRAFLWMRLSGALAK--------KKDAETSYEDILKACAN------------------ 206 (848)
T ss_pred cccchHHHHHHHHcCCCCcc--hhHHHHHHhhhhhhh--------hccccccHHHHHHHhcc------------------
Confidence 45567899999877 59999 999999999998532 12233457766655311
Q ss_pred CCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHH
Q 042357 187 NADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAK 266 (455)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~ 266 (455)
+ ...+-.||++|+-|+.|++..|.++.+ .+...|+|||.+.+.
T Consensus 207 -------------------d---------------k~~~~~qiekdllr~lpnn~cf~k~n~---~gi~~lrrilk~ia~ 249 (848)
T KOG2222|consen 207 -------------------D---------------KLMIGKQIEKDLLRILPNNACFSKKNG---EGIEALRRILKCIAF 249 (848)
T ss_pred -------------------c---------------ccchhHHHHHHHHHhCCCcceeeCCCC---cchHHHHHHHhhhee
Confidence 0 122357999999999999999998876 889999999999999
Q ss_pred hCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcc-cccccccCChhhHHHHHHHHHHHHHhhc
Q 042357 267 LNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVD-HFCQQLDNSSGGILSTLSHLAELLKAND 345 (455)
Q Consensus 267 ~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~lL~~~d 345 (455)
..|++||||||.-|+|.+|+.+. |+.|||++..+++.+.+ +|+. .+.-|++..-.+...+++.+.
T Consensus 250 ifpdigycqg~gviva~lllf~~-----------ee~afwmmaaiiedilp~nfys---qtllgiqaderv~~~li~~~l 315 (848)
T KOG2222|consen 250 IFPDIGYCQGMGVIVACLLLFCE-----------EENAFWMMAAIIEDILPANFYS---QTLLGIQADERVMHHLIACHL 315 (848)
T ss_pred ecCCcccccCccHHHHHHHHHhc-----------chhHHHHHHHHHHHhcCchhhh---hhHhccchhHHHHHHHHHhcc
Confidence 99999999999999999999998 99999999999998654 4432 267889999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhc-----CCHH
Q 042357 346 EELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLS-----GDFV 420 (455)
Q Consensus 346 P~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~-----~d~~ 420 (455)
|.|-+-|+.+ .++.++.+..||+|+|+..+.....+||||.||++|. ..++.+.++||+.-+.+|.. .+..
T Consensus 316 ~~ldeal~~~-dielslitl~w~ltlf~nv~~~killriwd~~fy~g~---i~ifql~i~ilkmkeqdi~~iaettensa 391 (848)
T KOG2222|consen 316 PDLDEALEDH-DIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGG---INIFQLIIGILKMKEQDIKEIAETTENSA 391 (848)
T ss_pred CchhHHHHhc-cceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCc---chhHHHHHHHHHhhHHHHHHHHHhcccHH
Confidence 9999999996 9999999999999999999999999999999999987 78999999999999988862 4678
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHhhcCc
Q 042357 421 ANLQLLQHYPD--VNIEHLLQVARDLSP 446 (455)
Q Consensus 421 ~il~~L~~~p~--~d~~~Ll~~A~~l~~ 446 (455)
+++..|..+|. .|++.++..|.++--
T Consensus 392 ~if~als~ip~~vtdve~l~~~~~~~~~ 419 (848)
T KOG2222|consen 392 DIFNALSDIPAEVTDVEKLFEQAGEFEF 419 (848)
T ss_pred HHHHHHHhCCchhhhHHHHHHHHhhccc
Confidence 99999999998 699999999977643
No 11
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=5.8e-29 Score=239.76 Aligned_cols=285 Identities=25% Similarity=0.437 Sum_probs=207.9
Q ss_pred ccCCHHHHHHHH-hcCCCCCCCChHHHHHHHhCCCCCChh--hHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhccccc
Q 042357 108 KEINLEKLQRIA-DTGLPDGGGLRATAWKLLLGYLPSCRD--LWEKELTENRQKYLKLKEELLL--RPSEITRIKDEVSN 182 (455)
Q Consensus 108 ~~i~~~~Lr~l~-~~GiP~~~~~R~~vW~~LLg~l~~~~~--~~~~~l~~~~~~Y~~l~~~~~~--~~~~~~~~~~~~~~ 182 (455)
++-+.-+||+.+ ..||... +|+.||++||.+++...+ .+......+|+.|.+..++-+. .|.++.
T Consensus 420 qiedd~~lrk~iffggid~s--ir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~-------- 489 (781)
T KOG2224|consen 420 QIEDDLKLRKAIFFGGIDKS--IRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHI-------- 489 (781)
T ss_pred cchhHHHhhhhheeccchhh--hhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH--------
Confidence 455556778765 5589999 999999999999876654 4555668899999998766432 222210
Q ss_pred cCCCCCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHH
Q 042357 183 YNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILL 262 (455)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~ 262 (455)
--|++ +.-.++|||.||..++++|.+++. ++.+.++|||.
T Consensus 490 -------------------------------~fwkn------vq~tvdkdvvrtdrnn~ff~gddn---pn~e~mk~ill 529 (781)
T KOG2224|consen 490 -------------------------------AFWKN------VQFTVDKDVVRTDRNNPFFCGDDN---PNTESMKNILL 529 (781)
T ss_pred -------------------------------HHHhh------eEEEEecceeeccCCCCcccCCCC---CcHHHHHHHHH
Confidence 01211 122468999999999999999876 89999999999
Q ss_pred HHHHhCCCCCCCCCchhhHHHHHHHhcCCCchh------------------hhhhhhHHHHHHHHHHHcCCccccccccc
Q 042357 263 LFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQ------------------NAENAEADSFSCFVRLLSDSVDHFCQQLD 324 (455)
Q Consensus 263 ~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~------------------~~~~~E~daF~~f~~l~~~~~~~~~~~~~ 324 (455)
.||.|||.+||.|||+++.||.|.-..++...+ ..-..|.|+||||+.+|.+. |+.. .
T Consensus 530 n~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna---~fv~-s 605 (781)
T KOG2224|consen 530 NFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNA---FFVC-S 605 (781)
T ss_pred hheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcce---EEEe-C
Confidence 999999999999888888888877665511110 00112555555555555432 2211 1
Q ss_pred CChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCc--hhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHH
Q 042357 325 NSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKP--QFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRV 402 (455)
Q Consensus 325 ~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~--~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i 402 (455)
+....+...+.-+..+++...|..|+||.++ |-+. .+||-||++.+|.|+||-..++|||...++.-. .-.|++++
T Consensus 606 p~d~dmd~~l~ylreliri~~~~fykhl~q~-~ed~lellfchrwlllcfkref~ea~airiweacwa~y~-tdyfhlfi 683 (781)
T KOG2224|consen 606 PRDEDMDHNLLYLRELIRIMHPHFYKHLEQH-GEDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYL-TDYFHLFI 683 (781)
T ss_pred CcchhhhHhHHHHHHHHHHhhHHHHHHHHHh-CcchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 1234566778889999999999999999997 4322 369999999999999999999999999998632 22789999
Q ss_pred HHHHHHHhhHhhhcCC--HHHHHHHHhCCCC-CCHHHHHHHHhhcCccc
Q 042357 403 CCAMLLCMKNRLLSGD--FVANLQLLQHYPD-VNIEHLLQVARDLSPDT 448 (455)
Q Consensus 403 ~lAiL~~~~~~Ll~~d--~~~il~~L~~~p~-~d~~~Ll~~A~~l~~~~ 448 (455)
|+||+..+.+..++.+ .++++--+.++.- +|-+.++++|..+.+++
T Consensus 684 claiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~ll~qf 732 (781)
T KOG2224|consen 684 CLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGLLHQF 732 (781)
T ss_pred HHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHHHHHH
Confidence 9999999999888533 4555555555544 78899999998876654
No 12
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=256.22 Aligned_cols=253 Identities=24% Similarity=0.334 Sum_probs=212.5
Q ss_pred ccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCC
Q 042357 108 KEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQN 187 (455)
Q Consensus 108 ~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (455)
..+...+++++.+.|+|.. .|+..|.++.|. ...+..+.+.|.++.+.....
T Consensus 188 ~~~qt~~~~Klv~~gipe~--~rgeiW~l~sGa--------v~~~l~~~Geygkll~~~~G~------------------ 239 (671)
T KOG4347|consen 188 NQIQTILLRKLLYNGFPED--PRGEIWYLASGA--------VASLLLNPGEYGKLLHSVTGK------------------ 239 (671)
T ss_pred cHHHHHHHHHHHHHhcCCC--hHHHHHHhhhHH--------HHHhhcCcHHhhhhhhcccCC------------------
Confidence 3455577899999999999 999999999997 223445667888877653220
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 042357 188 ADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKL 267 (455)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~ 267 (455)
..-..+.|++|+.|..|+++-|+.+ .+...|+|||.||++.
T Consensus 240 ----------------------------------~~~a~eEIE~Dl~rsLpEhpA~Q~e-----~gi~aLR~vL~Aya~~ 280 (671)
T KOG4347|consen 240 ----------------------------------RSVATEEIEPDLGRSLPEHPAFQSE-----PGIAALRRVLTAYAWS 280 (671)
T ss_pred ----------------------------------cccccccccCCCCCCCCcchhhhCC-----CchhhHHHHHHhhhcc
Confidence 1223568999999999999999999 8899999999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHhhcHH
Q 042357 268 NPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEE 347 (455)
Q Consensus 268 ~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~ 347 (455)
||+|||||-||-+++.+++... |+.|||+++++.+.+.+.|+.. ...|......+++.+++...|.
T Consensus 281 Np~vGYcQaMNIV~s~lll~~~-----------EEeafwll~~lce~~ip~yys~---~vvGtliDQ~vfe~lve~~lP~ 346 (671)
T KOG4347|consen 281 NPEVGYCQAMNIVGSELLLFCK-----------EEEAFWLLSKLCEIYIPDYYSK---TVVGTLIDQSVFEELVEDTLPV 346 (671)
T ss_pred CCchhHHHHHHHHHHhhhhhhc-----------cchHHHHHHHHHHHhcccccch---hhhhhHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999988 9999999999999987777543 6677888888999999999999
Q ss_pred HHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhc-CCHHHHHHHH
Q 042357 348 LWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLS-GDFVANLQLL 426 (455)
Q Consensus 348 L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~-~d~~~il~~L 426 (455)
||.|+..+ + ...+..++||+|+|...+|++..+||-|+||.+|. .+++.+++||+....+.|++ .|-.+++.+|
T Consensus 347 l~~~~~~l-~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~---rvlFqiaLail~~N~~~il~~~dDge~~~vl 421 (671)
T KOG4347|consen 347 LGEHLAVL-G-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGP---RVLFQIALAILKQNAERILSATDDGEAMMVL 421 (671)
T ss_pred HHHHhhhh-c-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhccc---HHHHHHHHHHHHhhHHHhcccCCchHHHHHH
Confidence 99999998 6 45679999999999999999999999999999998 99999999999999999997 5556666666
Q ss_pred hCCC----C-------------CCHHHHHHHHhhcCc
Q 042357 427 QHYP----D-------------VNIEHLLQVARDLSP 446 (455)
Q Consensus 427 ~~~p----~-------------~d~~~Ll~~A~~l~~ 446 (455)
.++- + +.+..||..|++-..
T Consensus 422 ~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~kFg 458 (671)
T KOG4347|consen 422 GNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEKFG 458 (671)
T ss_pred HHHHHhccCCCCCccccchhhhhHHHHHHHHHHHHhc
Confidence 5442 1 235677777776443
No 13
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-27 Score=225.29 Aligned_cols=203 Identities=17% Similarity=0.318 Sum_probs=171.6
Q ss_pred HHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHH
Q 042357 226 AEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSF 305 (455)
Q Consensus 226 ~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF 305 (455)
.+|+..||.|++...+--- +...+...|+.|..++......||.+.|.||+||||.+|+++++ |.+|+
T Consensus 97 ~nQV~LDv~RSl~rfppg~-p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-----------E~~Al 164 (395)
T KOG2595|consen 97 YNQVILDVERSLGRFPPGI-PKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-----------ELEAL 164 (395)
T ss_pred cceEEEehhhhhccCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-----------hHhhh
Confidence 5799999999985533211 11112267788888888888899999999999999999999999 99999
Q ss_pred HHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccC-ChHHHHHH
Q 042357 306 SCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEF-NLQPILRI 384 (455)
Q Consensus 306 ~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l-~~~~~~ri 384 (455)
-++..+.......| +.+++.+..+.+..+..+++..+|+||++|++- .+.+ +|+.+|++|||+|.+ ++..++|+
T Consensus 165 ~l~E~L~~~~lrdf---M~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~a-evgt-lFaLsWllTWFaH~L~~~~~vvRl 239 (395)
T KOG2595|consen 165 SLMEELSTLHLRDF---MLPTLDFTVRQLRLISPIIKEVNPELYQFLQSA-EVGT-LFALSWLLTWFAHNLKDIRIVVRL 239 (395)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhh-cccc-eehhhHHHHHHhhcchhHHHHHHH
Confidence 99999886533333 456788889999999999999999999999995 7885 799999999999999 79999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHhhHhhhc--CCHHHHHHHHhCCCC-CCHHHHHHHHhhcCccc
Q 042357 385 WDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLS--GDFVANLQLLQHYPD-VNIEHLLQVARDLSPDT 448 (455)
Q Consensus 385 WD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~--~d~~~il~~L~~~p~-~d~~~Ll~~A~~l~~~~ 448 (455)
+|+|++..+ -..+|+++|++.+.+.+|++ +|+..++.+|+.+|. +..+++|+.+..+..+.
T Consensus 240 fD~Flas~p---l~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~~~ 303 (395)
T KOG2595|consen 240 FDFFLASHP---LLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVLLITRK 303 (395)
T ss_pred HHHHHhcCc---chhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHHHHhcC
Confidence 999999765 78999999999999999996 667788999999999 89999999996655443
No 14
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=230.32 Aligned_cols=198 Identities=24% Similarity=0.419 Sum_probs=176.1
Q ss_pred HHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHH
Q 042357 224 EIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEAD 303 (455)
Q Consensus 224 ~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~d 303 (455)
+-...|..|+-||||++++|...-+ .++..|.++|.+|+..+|++|||||..+||+++|+.+. |+.
T Consensus 620 e~qhAi~idlgrtfp~h~~~~~qlg---~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~-----------e~~ 685 (948)
T KOG4436|consen 620 EQQHAILIDLGRTFPTHPYFSDQLG---LGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS-----------EEN 685 (948)
T ss_pred HHHHHHHHhhccccCCCHHHHhhcc---ccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc-----------hhh
Confidence 3456789999999999999998644 88999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHcC--CcccccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHH
Q 042357 304 SFSCFVRLLSD--SVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPI 381 (455)
Q Consensus 304 aF~~f~~l~~~--~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~ 381 (455)
||-++..||-. ++..| ..++..++.++..+..++..+.+.||+|+.+. .|.|++|+.+||+|+|+..||+..+
T Consensus 686 afellk~LM~~r~~r~qy----~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~-ei~pslyAapw~lt~fasQf~lGfv 760 (948)
T KOG4436|consen 686 AFELLKFLMFDRGMRKQY----RPDMKKLQIQMYQLSRLLHDYHRDLYNHLEEN-EISPSLYAAPWFLTVFASQFPLGFV 760 (948)
T ss_pred HHHHHHHHHHHHhhHhhh----chHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc-ccChHHhhhHHHHHHHHhhCcchHH
Confidence 99999999965 33333 34778889999999999999999999999995 9999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhc-CCHHHHHHHHhCCCC----CCHHHHHHHHhh
Q 042357 382 LRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLS-GDFVANLQLLQHYPD----VNIEHLLQVARD 443 (455)
Q Consensus 382 ~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~-~d~~~il~~L~~~p~----~d~~~Ll~~A~~ 443 (455)
.|++|.++..|. ++++.+++++|-.++..|++ .+|++|+.++++.-+ ...++++....+
T Consensus 761 arvfd~~flq~t---evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p~~~~~emeki~~qvf~ 824 (948)
T KOG4436|consen 761 ARVFDLIFLQGT---EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLPKMEHTEMEKIIKQVFE 824 (948)
T ss_pred HHHHHHHHhhcc---chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 999999999988 99999999999999999998 568999999998865 345666665543
No 15
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.92 E-value=9.8e-26 Score=231.80 Aligned_cols=264 Identities=27% Similarity=0.478 Sum_probs=214.7
Q ss_pred HhcCCCCCCCChHHHHHHHhCCCCCChhhHHH--HHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCCCCCCCCCcc
Q 042357 119 ADTGLPDGGGLRATAWKLLLGYLPSCRDLWEK--ELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNADNDVDGPL 196 (455)
Q Consensus 119 ~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~--~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (455)
.+.|+-.. +|+.+|+.++++++.+.+..+. .... ...|...+.+|......
T Consensus 174 ~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~~~~------------------------ 226 (488)
T KOG2197|consen 174 FSGGLSKS--LRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSSTSPE------------------------ 226 (488)
T ss_pred cccccccc--hhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheecccc------------------------
Confidence 34567777 9999999999999887764332 1122 56777777666431110
Q ss_pred cccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCC
Q 042357 197 RRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQG 276 (455)
Q Consensus 197 ~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QG 276 (455)
.++.+. .-.+....|.+||.||.+.+.++..... +....|..||.+|+.+++++|||||
T Consensus 227 --------~~~~~~----------~~~~~~~~i~~dv~rtDr~~~~~~~~~n---~~~~~l~~iL~ty~~~~~d~GY~Qg 285 (488)
T KOG2197|consen 227 --------QSPESE----------GYLERKSRIEKDVGRTDRSLEFYEGEEN---PHLARLVDILLTYAVYDFDLGYCQG 285 (488)
T ss_pred --------cccccc----------chhhhhhhhhhhccccchhhhhhhcccc---cCHHHHHHHHhhcccccCccccccC
Confidence 000000 0123357899999999999999998732 2489999999999999999999999
Q ss_pred chhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhc
Q 042357 277 MNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTN 356 (455)
Q Consensus 277 m~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~ 356 (455)
|+++++|++.++.+ |.+|||||+.+|.+...+|.. +..+++.++..+..+++..||.||+||+..
T Consensus 286 mSDllspi~~v~~d----------e~~aFwcFv~fm~~~~~nF~~----d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~- 350 (488)
T KOG2197|consen 286 MSDLLSPILIVMED----------EVEAFWCFVGFMDRLRHNFRI----DQSGMQTQLAQLSSLIQELDPRLYQHLEKL- 350 (488)
T ss_pred chhhcCcceeeecC----------chHHHHHHHHHHHHHhhcCcc----ccccHHHHhhhhhhhccccCHHHHhhcccc-
Confidence 99999999999998 999999999999998888865 678899999999999999999999999986
Q ss_pred CCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhc--CCHHHHHHHHhCCCC-CC
Q 042357 357 EIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLS--GDFVANLQLLQHYPD-VN 433 (455)
Q Consensus 357 ~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~--~d~~~il~~L~~~p~-~d 433 (455)
+....+|+++|+..+|-++|..+++++||.+++..-... .|.+|++.|+|....+.|+. .++.+++..+..+.. .|
T Consensus 351 d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~-~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d 429 (488)
T KOG2197|consen 351 DAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSP-HFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKAD 429 (488)
T ss_pred CCCccceeeehhhcccccccccccHHHHHHHHHhcCccc-hHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccch
Confidence 888889999999999999999999999999999986655 89999999999998888886 557788887777666 78
Q ss_pred HHHHHHHHhhcCc
Q 042357 434 IEHLLQVARDLSP 446 (455)
Q Consensus 434 ~~~Ll~~A~~l~~ 446 (455)
...++..|..+..
T Consensus 430 ~~~~~~~A~~~~~ 442 (488)
T KOG2197|consen 430 VLWVLVRAEALER 442 (488)
T ss_pred hhhHHHHHHHHHH
Confidence 8888888876554
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.92 E-value=3.3e-25 Score=223.90 Aligned_cols=184 Identities=29% Similarity=0.485 Sum_probs=168.1
Q ss_pred HHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHH
Q 042357 226 AEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSF 305 (455)
Q Consensus 226 ~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF 305 (455)
..+| +|+.||+|.+..|....+ .+++.|.+|+.+|+.++|++||||||..++++++.++. |++||
T Consensus 186 ~~~~-~d~~Rt~~~~~~f~~~~~---~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-----------ee~af 250 (397)
T KOG1102|consen 186 SEII-RDLSRTFPAHLLFRKRYG---VGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-----------EEEAF 250 (397)
T ss_pred hHHH-hhccCcCcchhhhhhhcC---cccccccccchhhcccCCCcccccchhhHhhhhhccCc-----------hhhhh
Confidence 3567 999999999999988544 78899999999999999999999999999999999998 99999
Q ss_pred HHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHH
Q 042357 306 SCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIW 385 (455)
Q Consensus 306 ~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riW 385 (455)
|+++.+|....-.+ +..++.+++..+..++.+++...|.++.|+... +++..+|+..|++|+|+..+|++.+.|+|
T Consensus 251 ~~lv~l~~~~~~~~---~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~-~~~~~~~~s~w~~t~f~~k~p~~~~~ri~ 326 (397)
T KOG1102|consen 251 PLLVKLMKNYGLDL---LSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQ-GIELSMYASQWFLTLFAAKFPLELVLRIW 326 (397)
T ss_pred hhhhhhhhccchhc---ccccCCchhhhHHHHHHHHHHhChhhhhhcccc-ccccceeccceeeEeeeccccHHHHHHHh
Confidence 99999998753112 233778899999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHhhHhhhcCCHHHHHHHHhCCCC
Q 042357 386 DTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPD 431 (455)
Q Consensus 386 D~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~~d~~~il~~L~~~p~ 431 (455)
|+++.+|. .+++.+++|++....+.+...+++.+++++++.+.
T Consensus 327 d~~~~~g~---~i~~~~~~~l~~~~~~~~~~~~~e~~~~~l~~~~~ 369 (397)
T KOG1102|consen 327 DALFVEGV---SILFRFSLALLKHKADDLLDLDFESLLSYLRVDLP 369 (397)
T ss_pred HHHHHhch---HHHHHHHHHHhhhhhHHHhhccHHHHHHHHhcccH
Confidence 99999985 89999999999999999999999999999988776
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.8e-21 Score=173.28 Aligned_cols=176 Identities=23% Similarity=0.422 Sum_probs=145.7
Q ss_pred CCHHHHHHHHhcCCCCCCCChHHHHHHHhCCC-CCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCCC
Q 042357 110 INLEKLQRIADTGLPDGGGLRATAWKLLLGYL-PSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNA 188 (455)
Q Consensus 110 i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l-~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (455)
.+.+++|-.|++|||+. +|+.+|+.|.|.. +... ++..|..+..
T Consensus 91 kk~~~ir~rcrkgipps--lr~Raw~ylsGa~~~~~~---------np~~~~~~~~------------------------ 135 (267)
T KOG2221|consen 91 KKQKKIRPRCRKGIPPS--LRGRAWRYLSGAPSPPPK---------NPVVFDELGP------------------------ 135 (267)
T ss_pred hccccccchhhcCCCcc--cchhHHHhhcCCCCCCCC---------CcchhhhccC------------------------
Confidence 34466888899999999 9999999999973 2211 2222322210
Q ss_pred CCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhC
Q 042357 189 DNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLN 268 (455)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~ 268 (455)
.- .+..+.+.|++|++|-||.+.+|..... .++..|.|+|.+|..++
T Consensus 136 --------------~p----------------G~p~t~e~i~kdl~rqfp~hemf~s~~k---~gkqelfr~lka~ti~~ 182 (267)
T KOG2221|consen 136 --------------AP----------------GDPKTAEGIHKDLHRQFPFHEMFGSSGK---TGKQELFRVLKAYTIYK 182 (267)
T ss_pred --------------CC----------------CCCcchhhhccccccCCCcccccccccc---cchHHHHHHHHHHHHhC
Confidence 00 2345578999999999999999988754 77899999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHhhcHHH
Q 042357 269 PVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEEL 348 (455)
Q Consensus 269 p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L 348 (455)
|+.||||+-.-|++++++.+. +.+|||||+.+++.+.+.|+. .+...|+..-..+..|+++.+|..
T Consensus 183 pe~g~cq~qapiaa~llmhmp-----------~rdaf~~~vqicekylqgy~~---sgleaiq~dg~il~~Llkk~~~p~ 248 (267)
T KOG2221|consen 183 PEEGYCQAQAPIAAVLLMHMP-----------ARDAFWCFVQICEKYLQGYYS---SGLEAIQNDGGILEGLLKKASPPP 248 (267)
T ss_pred chhhhhhhhchHHHHHHhccc-----------HHHHHHHHHHHHHHHcccccc---cchhhhhcccHHHHHHHHhcCCCC
Confidence 999999999999999999999 999999999999987666643 266778888899999999999999
Q ss_pred HHHHHHhcCCCchhhhHHHH
Q 042357 349 WRHLEYTNEIKPQFYAFRWI 368 (455)
Q Consensus 349 ~~hL~~~~~i~~~~f~~~W~ 368 (455)
|.||... +++|.+|...||
T Consensus 249 ~rH~~~~-kvdp~lym~ewF 267 (267)
T KOG2221|consen 249 YRHLGGD-KVDPLLYMTEWF 267 (267)
T ss_pred CcccccC-CCCHHHhhhccC
Confidence 9999995 999999999997
No 18
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.67 E-value=7.6e-16 Score=150.18 Aligned_cols=178 Identities=18% Similarity=0.418 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCC--CchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccCChhh
Q 042357 252 KNREAMRNILLLFAKLNPVIRYVQ--GMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGG 329 (455)
Q Consensus 252 ~~~~~L~rIL~~y~~~~p~igY~Q--Gm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~ 329 (455)
+....|..++..|++. ..+.|.. |.-.+.-|++..-.. .++.|-||.++++.+.+.-++ +.|
T Consensus 90 ~vv~dlES~iTfYCK~-Rn~~Y~~d~gWi~lL~pl~~L~lp----------rsd~fN~F~ai~~kYIPkdcr-----pkg 153 (669)
T KOG3636|consen 90 PVVSDLESFITFYCKK-RNMDYIKDIGWITLLEPLLLLNLP----------RSDEFNVFFAITTKYIPKDCR-----PKG 153 (669)
T ss_pred chhHhhhhHhhhhhhc-cCCcccccccHHHHHHHHHHhcCC----------cchhhhhhHhhhhcccCCCCC-----CCC
Confidence 3445678888888853 3455554 444667777665444 789999999999987665553 122
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 042357 330 ILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLC 409 (455)
Q Consensus 330 i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~ 409 (455)
.-+..|.-+|+.|+|+|..||..+ .+.|.+|+..||-+||+...+.+.+.-+||.|+-.++ +.+++++++.||+.
T Consensus 154 --~~Fh~FRLLlqYHdPelc~~Ldtk-kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD--PF~vffLaliiLiN 228 (669)
T KOG3636|consen 154 --QIFHLFRLLLQYHDPELCNHLDTK-KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD--PFLVFFLALIILIN 228 (669)
T ss_pred --ccchHHHHHHHhcCHHHhhhhhcc-ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--ceehHHHHHHHhcc
Confidence 337789999999999999999997 9999999999999999999999999999999999877 36788899999999
Q ss_pred hhHhhhc---CCHHHHHHHHhCCCC----CCHHHHHHHHhhcCcccCC
Q 042357 410 MKNRLLS---GDFVANLQLLQHYPD----VNIEHLLQVARDLSPDTSS 450 (455)
Q Consensus 410 ~~~~Ll~---~d~~~il~~L~~~p~----~d~~~Ll~~A~~l~~~~~~ 450 (455)
.|++|++ ...++++++|.+.|. .|++.+++.|..+..+++.
T Consensus 229 ake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~KTP~ 276 (669)
T KOG3636|consen 229 AKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSDKTPE 276 (669)
T ss_pred cHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhhcChH
Confidence 9999995 346799999999998 5899999999988887753
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=157.55 Aligned_cols=259 Identities=19% Similarity=0.193 Sum_probs=200.2
Q ss_pred ccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCC
Q 042357 108 KEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQN 187 (455)
Q Consensus 108 ~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (455)
+.....+|+.++.+|+|.. .|..+|+.|+...... ++ --.+.|.++....-.
T Consensus 170 r~~s~~~l~e~Ve~~~p~~--frli~~qlLssatd~~-----q~--~I~e~~sdl~~~s~~------------------- 221 (948)
T KOG4436|consen 170 RKKSLHKLKELVEGGIPMH--FRLIRWQLLSSATDRE-----QA--LIFEDYSDLAPCSSQ------------------- 221 (948)
T ss_pred hhhchhhhHHHHhcCCchH--HHHHHHHHhcccccch-----hh--HHHHHHHHHhhhcch-------------------
Confidence 3445678899999999999 9999999998763211 01 122444444322100
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchh----hhHHHHHHHHHHHH
Q 042357 188 ADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAF----SRKNREAMRNILLL 263 (455)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~----~~~~~~~L~rIL~~ 263 (455)
.++...+-.|..|++||.|.+.+|....+. ..-.++.|.++..+
T Consensus 222 --------------------------------~Ek~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~ 269 (948)
T KOG4436|consen 222 --------------------------------QEKELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKA 269 (948)
T ss_pred --------------------------------hhhhHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHH
Confidence 023445778999999999999999987642 11268999999999
Q ss_pred HHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHh
Q 042357 264 FAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKA 343 (455)
Q Consensus 264 y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~ 343 (455)
|+...-+++||||-+.+++.++++++ ++.+|..++.+|..++. ....++.+..+...+..++...+.
T Consensus 270 ~~~~~~E~ifsqGs~~m~Gll~l~~~-----------~E~assv~~~lm~~~rl--~~l~kpe~~~l~~~~~q~e~~~q~ 336 (948)
T KOG4436|consen 270 YSTKDLEVIFSQGSAFMVGLLLLQMP-----------VEEASSVKVQLMILYRL--RELSKPEMEPLGLCMFQLECTNQD 336 (948)
T ss_pred HhhhhhhhhhccchHHHHHHHHhcCc-----------HHHHHHHHHHHHHhhcc--cccCCcccchhHHHHHhhcccccc
Confidence 99999999999999999999999998 89999999999987542 122344556666677888999999
Q ss_pred hcH-HHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHH-HHhhHhhhcCCHHH
Q 042357 344 NDE-ELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAML-LCMKNRLLSGDFVA 421 (455)
Q Consensus 344 ~dP-~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL-~~~~~~Ll~~d~~~ 421 (455)
..| .|+.|+.+. +++.++|+-.||++.|...||+...-|+.|+|.++|- ...+++.+|++ ....-.++..|+..
T Consensus 337 ~sp~dl~sH~~eq-~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egl---lk~fr~~ia~~~~~~d~~~~s~D~EG 412 (948)
T KOG4436|consen 337 QSPMDLFSHFPEQ-HFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGL---LKRFRDSIAYLHQLRDIELESLDMEG 412 (948)
T ss_pred cchhHHhhccccc-CCCccHHHHHHHHHhhcccCchhhccccccccccccH---HHHHhhhHHHHHHHhhhhhhccCccc
Confidence 999 999999996 8999999999999999999999999999999999876 78889999999 33344566788888
Q ss_pred HHHHHhCC-CC---CCHHHHHHHHhh
Q 042357 422 NLQLLQHY-PD---VNIEHLLQVARD 443 (455)
Q Consensus 422 il~~L~~~-p~---~d~~~Ll~~A~~ 443 (455)
+.+.+++- +. -+++.+...|..
T Consensus 413 ~~~~~qr~~s~~vggtp~k~~t~a~q 438 (948)
T KOG4436|consen 413 MLSYFQRNRSNTVGGTPDKLRTAAWQ 438 (948)
T ss_pred cccchhhccccccCCCCchHHHHHHH
Confidence 87777533 22 345666665543
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.1e-08 Score=95.88 Aligned_cols=177 Identities=21% Similarity=0.245 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcC--CcccccccccCChhh
Q 042357 252 KNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSD--SVDHFCQQLDNSSGG 329 (455)
Q Consensus 252 ~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~--~~~~~~~~~~~~~~~ 329 (455)
.+....+.||.+.+...|++++|..+..+++.++.+.-+ |+++|--.++++.- ..... .+.+.-.
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysid----------eaecfekacrilacndpgrrl---idqsfla 175 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSID----------EAECFEKACRILACNDPGRRL---IDQSFLA 175 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhccc----------HHHHHHHhheeeeecCcchhh---hhhHHHH
Confidence 344578899999999999999999999999998887766 89888877776642 22122 2334556
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 042357 330 ILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLC 409 (455)
Q Consensus 330 i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~ 409 (455)
....+..|..++.++.-..++.+-.. .-+..-....|-.-+| .++|+-...|++|+|+.+|+ +.++++++|||+.
T Consensus 176 fesscmtfgdlvnkycqaahklmvav-sedvlqvyadwqrwlf-gelplcyfarvfdvflvegy---kvlyrvalailkf 250 (559)
T KOG2801|consen 176 FESSCMTFGDLVNKYCQAAHKLMVAV-SEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGY---KVLYRVALAILKF 250 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecch---HHHHHHHHHHHHH
Confidence 66778889999998888777766543 2222233456766666 68999999999999999999 9999999999998
Q ss_pred hhHhhh----cCC--HHHHHHHHhCCCC-CCHHHHHHHHhhcCc
Q 042357 410 MKNRLL----SGD--FVANLQLLQHYPD-VNIEHLLQVARDLSP 446 (455)
Q Consensus 410 ~~~~Ll----~~d--~~~il~~L~~~p~-~d~~~Ll~~A~~l~~ 446 (455)
+.+.-- +.| ..++-.+.+++.. +.+++|+.+|..++.
T Consensus 251 fhkvragqplesdsvkqdirtfvrdiaktvspekllekafairl 294 (559)
T KOG2801|consen 251 FHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRL 294 (559)
T ss_pred HHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 876543 333 2456677777776 889999999987764
No 21
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=98.46 E-value=3.1e-09 Score=105.58 Aligned_cols=279 Identities=18% Similarity=0.265 Sum_probs=179.4
Q ss_pred hhhcCccccCCCccchhhhhhhhhccccccccccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhh-HH-HHHH
Q 042357 76 RVRRNPKKYGSRLVSVKEVIAADDKRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDL-WE-KELT 153 (455)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~-~~-~~l~ 153 (455)
.+..++.............++...|.+...........-++.-.++|+... .|..+|+.+.+.+...... .+ ..-.
T Consensus 512 aLV~h~~~~pD~pcda~~glt~~~W~qy~~d~t~~e~~~l~~~~~g~~e~~--~r~~~~p~~~~~~~~g~~~~~~d~~e~ 589 (813)
T KOG1648|consen 512 ALVDHKTLIPDDPCDASAGLTEKFWKQYRADPTIEEWRVLEAEVRGRDEEA--FRAARAPKAASPVREGSCDVFEDPNEP 589 (813)
T ss_pred HHhcccccCCCCCCCccccccHHHHHHHhcCCchHHHHHHHHHHhcccHHH--HhhcccccccccccccccchhcCCCcc
Confidence 344454444555566666677778887654433333334445567788888 9999999999976544321 11 1112
Q ss_pred HHHHHHHHHHHHHhcCcchhhhhhccccccCCCCCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhh
Q 042357 154 ENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDL 233 (455)
Q Consensus 154 ~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv 233 (455)
...+.|..-+-.+.. .-+..|++|+
T Consensus 590 ~~s~~y~~~l~~~~~-------------------------------------------------------~~~~~~~kd~ 614 (813)
T KOG1648|consen 590 TCSQHYDRNLITLFR-------------------------------------------------------ANLHRIDKDV 614 (813)
T ss_pred HHHHHHHHHHHHHHh-------------------------------------------------------hheeeecchh
Confidence 233555554333321 1145789999
Q ss_pred cccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHc
Q 042357 234 QRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLS 313 (455)
Q Consensus 234 ~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~ 313 (455)
.|...+.-+|.+. ...++ +|+.+.|...|-+-||.|||.++.+|++..+.+ |+-+--||.-+|-
T Consensus 615 e~~~~~~~~fs~~-----~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed----------~~~~~e~~s~~~~ 678 (813)
T KOG1648|consen 615 ERCDRNLMFFSNK-----DNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFED----------EALTLECFSLLML 678 (813)
T ss_pred hhCcchheeecCC-----cchhh-heeeeeeeccccccccccchhhccCCcCCChhh----------cccccCCCcHHHH
Confidence 9999999999998 44555 888889999999999999999999999998876 6666667777776
Q ss_pred CCcccccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCC
Q 042357 314 DSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPF 393 (455)
Q Consensus 314 ~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~ 393 (455)
.-+.+|.+ .+++...+-.+. +++..+|-.. -+.. .+-..++||..-|.++++.+....+|..++....
T Consensus 679 ~q~~~~~q-----~~~~~~~l~~~r-~~~v~~~l~s-~id~-----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 746 (813)
T KOG1648|consen 679 RQRGKFPQ-----RPGMSKCLLNLR-LIQVVDPLIS-DIDY-----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQR 746 (813)
T ss_pred HhcccCCC-----CCCccccccccc-chhhhcchhc-chhh-----hhhcceeeeccCcccccCCCCcceeeEeeccccc
Confidence 65555654 123323222222 5566666221 1221 1235699999999999999999999999888531
Q ss_pred --CchhHHHHHHHHHHHHhhHhhhc--CCHHHHHHHHhCCCC-CCHHHHHHH
Q 042357 394 --GIQHMLLRVCCAMLLCMKNRLLS--GDFVANLQLLQHYPD-VNIEHLLQV 440 (455)
Q Consensus 394 --~~~~~l~~i~lAiL~~~~~~Ll~--~d~~~il~~L~~~p~-~d~~~Ll~~ 440 (455)
-...|-+++++|. ..+-+.++. .++.+++++++...+ -|.+.++..
T Consensus 747 ~~~~~~~~i~~g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~ 797 (813)
T KOG1648|consen 747 LRITDDFAIFFGLAT-TNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSS 797 (813)
T ss_pred cccCcchhhhhhhHH-HhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhc
Confidence 1236677788877 334444443 456677777765554 355554443
No 22
>PF14961 BROMI: Broad-minded protein
Probab=96.73 E-value=0.023 Score=63.63 Aligned_cols=170 Identities=15% Similarity=0.199 Sum_probs=108.5
Q ss_pred HHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCC--------cccccccccCC--h
Q 042357 258 RNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDS--------VDHFCQQLDNS--S 327 (455)
Q Consensus 258 ~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~--------~~~~~~~~~~~--~ 327 (455)
.+|++.|..+.+.-+| .|..=.++.+++++..| -+.+...+.++...+ +-+....+..+ .
T Consensus 1087 l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd---------~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~ 1156 (1296)
T PF14961_consen 1087 LHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGD---------KERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAE 1156 (1296)
T ss_pred hHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCC---------hhHhHHHHHHHHHHHHHhHhccccccccccCCchhhh
Confidence 3455555555555445 57776666666666543 333433333332221 11221111111 0
Q ss_pred hhH----HHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHH
Q 042357 328 GGI----LSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVC 403 (455)
Q Consensus 328 ~~i----~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~ 403 (455)
.|+ ...+..++.+|+...|.+|.-|.-. |..|...+.+|+.-+|=..+++..++.-.=+.+..|. .+-+|+|
T Consensus 1157 s~i~p~~~~~~~~vE~ll~~E~P~V~saf~~s-g~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~---dyqvY~~ 1232 (1296)
T PF14961_consen 1157 SGIHPVYFCSCHYVEMLLKAELPLVFSAFRMS-GFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP---DYQVYIC 1232 (1296)
T ss_pred cCCCchhhhHHHHHHHHHHhhccHHHHHHHHc-CCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc---cceeehh
Confidence 111 2346779999999999999999874 9999999999999999999999888766666666666 8999999
Q ss_pred HHHHHHhhHhhhcCCH-HHHHHHHhCCCC--CCHHHHHHHH
Q 042357 404 CAMLLCMKNRLLSGDF-VANLQLLQHYPD--VNIEHLLQVA 441 (455)
Q Consensus 404 lAiL~~~~~~Ll~~d~-~~il~~L~~~p~--~d~~~Ll~~A 441 (455)
+|++++.+++|++.-- .++-.+|+.-+- ..+..-+...
T Consensus 1233 VailkHlq~~ilq~~q~q~L~~flke~~l~gF~~~~~~~yM 1273 (1296)
T PF14961_consen 1233 VAILKHLQPEILQHTQTQDLQVFLKEEALRGFRVSDYLEYM 1273 (1296)
T ss_pred HHHHHHhhHHHHHhhhhchHHHHhhhccccceeHHhHHHHH
Confidence 9999999999996322 233444443333 3444433333
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=77.62 E-value=1.6 Score=45.94 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhh--HHHHHHHHHHHHHHHHHHH
Q 042357 114 KLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDL--WEKELTENRQKYLKLKEEL 166 (455)
Q Consensus 114 ~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~--~~~~l~~~~~~Y~~l~~~~ 166 (455)
.++.+...||++. +|+.+|.+|+|+++.+.+. ........+.+|..+....
T Consensus 69 ~l~~i~~~gi~ps--ir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c 121 (488)
T KOG2197|consen 69 LLKLIILGGIDPS--IRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVC 121 (488)
T ss_pred hheeeecCCCCCc--ccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHc
Confidence 3556667899999 9999999999998876653 3333455667888887654
No 24
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=72.60 E-value=1.5 Score=44.21 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHcCCccc
Q 042357 298 ENAEADSFSCFVRLLSDSVDH 318 (455)
Q Consensus 298 ~~~E~daF~~f~~l~~~~~~~ 318 (455)
-+.|.++||||+.+|+.+.+.
T Consensus 555 vqnesetfwcfvglmqgmsdl 575 (781)
T KOG2224|consen 555 VQNESETFWCFVGLMQGMSDL 575 (781)
T ss_pred hccccchhhhhhhhhccchhh
Confidence 456899999999999876543
No 25
>PHA00680 hypothetical protein
Probab=26.43 E-value=2.7e+02 Score=22.36 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 042357 332 STLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCA 405 (455)
Q Consensus 332 ~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lA 405 (455)
..+..|+.++..+|.+-|....+. .++.+. ...-+-|+=++.+....+..+-|.++..+-+....+..++.|
T Consensus 30 eclrrfealldthdseayelvter-eldasv-lcetldtldahdiepgalaqlcdamligpantaallnalaaa 101 (143)
T PHA00680 30 ECLRRFEALLDTHDSEAYELVTER-ELDASV-LCETLDTLDAHDIEPGALAQLCDAMLIGPANTAALLNALAAA 101 (143)
T ss_pred HHHHHHHHHHhccchHHHHHHHHH-hhhHHH-HHHhhccchhhcCCchHHHHHhHHHhcCcccHHHHHHHHHhh
Confidence 457789999999999999998886 777664 345566777888888889999999998544333333333333
No 26
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=24.88 E-value=49 Score=19.72 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=11.4
Q ss_pred CCCCCCchhhHHHHHH
Q 042357 271 IRYVQGMNEVLAPMYY 286 (455)
Q Consensus 271 igY~QGm~~i~a~ll~ 286 (455)
-||.||+.+..--.+.
T Consensus 3 sgyiqgipdflkgylh 18 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYLH 18 (31)
T ss_pred cccccccHHHHHHHHh
Confidence 3899999887655443
No 27
>PF12854 PPR_1: PPR repeat
Probab=21.44 E-value=1.5e+02 Score=18.37 Aligned_cols=31 Identities=6% Similarity=0.153 Sum_probs=27.8
Q ss_pred CCCchhhhHHHHHHHhcccCChHHHHHHHHH
Q 042357 357 EIKPQFYAFRWITLLLTQEFNLQPILRIWDT 387 (455)
Q Consensus 357 ~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~ 387 (455)
|+.|..+++.-++..|.+.=.++.+.+++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7889999999999999999999999999885
Done!