Query 042357
Match_columns 455
No_of_seqs 290 out of 1583
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 4.4E-54 1.5E-58 436.5 27.3 289 100-448 11-382 (396)
2 2qfz_A TBC1 domain family memb 100.0 2.2E-53 7.4E-58 425.2 26.6 282 107-448 35-336 (345)
3 2qq8_A TBC1 domain family memb 100.0 8.5E-53 2.9E-57 418.6 22.8 282 106-452 32-316 (334)
4 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 7.9E-49 2.7E-53 386.6 20.7 248 110-446 21-276 (310)
5 3qye_A TBC1 domain family memb 100.0 1.8E-49 6E-54 394.8 13.0 257 109-446 46-309 (331)
6 4hl4_A TBC1 domain family memb 100.0 3.8E-48 1.3E-52 378.4 16.4 257 106-450 28-291 (292)
7 3qwl_A TBC1 domain family memb 100.0 1.2E-43 4.1E-48 344.1 16.4 272 69-448 2-286 (294)
8 2dpr_A CON-T(K7GLA); conantoxi 48.2 8.3 0.00028 21.2 1.4 19 62-80 2-20 (26)
9 2js3_A Uncharacterized protein 15.0 52 0.0018 24.1 1.0 10 272-281 17-26 (96)
10 4g26_A Pentatricopeptide repea 12.7 7.1E+02 0.024 24.6 9.2 48 347-395 126-173 (501)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=4.4e-54 Score=436.50 Aligned_cols=289 Identities=30% Similarity=0.533 Sum_probs=252.6
Q ss_pred ccccccccccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcc
Q 042357 100 KRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDE 179 (455)
Q Consensus 100 ~~~~~~~~~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~ 179 (455)
|...+.....+|.++||+++++|||+. +|+.||++++|++|.+.+.|+..++++++.|.++++++.....
T Consensus 11 w~~lL~~~~~~d~~~Lr~l~~~GIP~~--lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~-------- 80 (396)
T 1fkm_A 11 FDNILKDKTIINQQDLRQISWNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQH-------- 80 (396)
T ss_dssp HHHHHSSCSBCCHHHHHHHHTTCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSC--------
T ss_pred HHHHHcCCCCCCHHHHHHHHHcCCCHH--HHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccC--------
Confidence 444333333489999999999999999 9999999999999999999999999999999999987643100
Q ss_pred ccccCCCCCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHH
Q 042357 180 VSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRN 259 (455)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~r 259 (455)
..+.+..+||++||+||+|++++|+.+ .+++.|+|
T Consensus 81 ----------------------------------------~~~~~~~~qI~~Dv~RT~p~~~~F~~~-----~~~~~L~r 115 (396)
T 1fkm_A 81 ----------------------------------------SRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQR 115 (396)
T ss_dssp ----------------------------------------STHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHH
T ss_pred ----------------------------------------cccHHHHHHHHHHhhhhCCCcccccCc-----hHHHHHHH
Confidence 124677899999999999999999987 89999999
Q ss_pred HHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCC------------------chhhhhhhhHHHHHHHHHHHcCCcccccc
Q 042357 260 ILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDP------------------DEQNAENAEADSFSCFVRLLSDSVDHFCQ 321 (455)
Q Consensus 260 IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~------------------~~~~~~~~E~daF~~f~~l~~~~~~~~~~ 321 (455)
||.+|+.+||++|||||||+|+++|++++..+. ..+...++|++|||||+++|+.+.++|..
T Consensus 116 IL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~ 195 (396)
T 1fkm_A 116 ILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH 195 (396)
T ss_dssp HHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST
T ss_pred HHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999875321 11233456999999999999998777754
Q ss_pred cccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCC---------
Q 042357 322 QLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNP--------- 392 (455)
Q Consensus 322 ~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g--------- 392 (455)
+++++...+..+..+|+.++|+||+||.+. ++++.+|+++||+|+|+++||++.++||||.||++|
T Consensus 196 ----~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~-~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~ 270 (396)
T 1fkm_A 196 ----GQPGILRQVKNLSQLVKRIDADLYNHFQNE-HVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYS 270 (396)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-TCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC--------
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhh
Confidence 678999999999999999999999999997 999999999999999999999999999999999987
Q ss_pred ------------------------------------------C---------CchhHHHHHHHHHHHHhhHhhhcCCHHH
Q 042357 393 ------------------------------------------F---------GIQHMLLRVCCAMLLCMKNRLLSGDFVA 421 (455)
Q Consensus 393 ------------------------------------------~---------~~~~~l~~i~lAiL~~~~~~Ll~~d~~~ 421 (455)
. +...+++|+|+|+|..+|++|+++||++
T Consensus 271 ~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~ 350 (396)
T 1fkm_A 271 MSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQE 350 (396)
T ss_dssp ----------------------------------------------------CHHHHHHHHHHHHHHHTHHHHTTCCHHH
T ss_pred hhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 1 2247999999999999999999999999
Q ss_pred HHHHHhCCCCC-----CHHHHHHHHhhcCccc
Q 042357 422 NLQLLQHYPDV-----NIEHLLQVARDLSPDT 448 (455)
Q Consensus 422 il~~L~~~p~~-----d~~~Ll~~A~~l~~~~ 448 (455)
++++|+++|.. |++.|++.|..++..+
T Consensus 351 ~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~ 382 (396)
T 1fkm_A 351 TITFLQNPPTKDWTETDIEMLLSEAFIWQSLY 382 (396)
T ss_dssp HHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcccccHHHHHHHHHHHHHHH
Confidence 99999999973 7999999999876554
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=2.2e-53 Score=425.24 Aligned_cols=282 Identities=32% Similarity=0.555 Sum_probs=247.5
Q ss_pred cccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCC
Q 042357 107 EKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQ 186 (455)
Q Consensus 107 ~~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (455)
+..+|.++||+++++|||+. +|+.||++++|++|.+.+.|...+++++..|.++++++...+..
T Consensus 35 ~~~~d~~~Lr~l~~~GiP~~--~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~-------------- 98 (345)
T 2qfz_A 35 GPNTDLEELRRLSWSGIPKP--VRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRND-------------- 98 (345)
T ss_dssp CSBCCHHHHHHHHTTCCCGG--GHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred CCCCCHHHHHHHHHCCCCHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCc--------------
Confidence 34589999999999999999 99999999999999999999999999999999999876431100
Q ss_pred CCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHH
Q 042357 187 NADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAK 266 (455)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~ 266 (455)
+ .+.+..+||++||+||+|+ ++|+.+ .+++.|.|||.+|+.
T Consensus 99 --------------------------~-------~~~~~~~~I~~Dv~RT~p~-~~F~~~-----~~~~~L~rIL~~ya~ 139 (345)
T 2qfz_A 99 --------------------------E-------VHQDTYRQIHIDIPRMSPE-ALILQP-----KVTEIFERILFIWAI 139 (345)
T ss_dssp -----------------------------------CHHHHHHHHHHGGGCSCH-HHHTSH-----HHHHHHHHHHHHHHH
T ss_pred --------------------------c-------chHHHHHHHHHhCcccCCc-cccCCc-----hHHHHHHHHHHHHHH
Confidence 0 1345689999999999999 999987 789999999999999
Q ss_pred hCCCCCCCCCchhhHHHHHHHhcCCCc--------------hhhhhhhhHHHHHHHHHHHcCCcccccccccCChhhHHH
Q 042357 267 LNPVIRYVQGMNEVLAPMYYVFSTDPD--------------EQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILS 332 (455)
Q Consensus 267 ~~p~igY~QGm~~i~a~ll~~~~~d~~--------------~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~i~~ 332 (455)
+||++|||||||+||++|++++..+.. .+....+|++|||||+++|+.+.++|.. ++++++.
T Consensus 140 ~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~----~~~~i~~ 215 (345)
T 2qfz_A 140 RHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTF----AQPGIQM 215 (345)
T ss_dssp HCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSST----TCHHHHH
T ss_pred HCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHcccccccc----CcHHHHH
Confidence 999999999999999999998753211 1122456999999999999998776654 6789999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhH
Q 042357 333 TLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKN 412 (455)
Q Consensus 333 ~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~ 412 (455)
.+..+..+|+.++|+||+||.+. ++++.+|+++||+|+|++++|++.++||||.+|++|.+...+++|+|+|+|..+++
T Consensus 216 ~~~~l~~ll~~~dP~L~~hL~~~-~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~ 294 (345)
T 2qfz_A 216 KVKMLEELVSRIDEQVHRHLDQH-EVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRK 294 (345)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHT-TCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 99999999999999999999999999999999999875445899999999999999
Q ss_pred hhh-cCCHHHHHHHHhCCCCC-----CHHHHHHHHhhcCccc
Q 042357 413 RLL-SGDFVANLQLLQHYPDV-----NIEHLLQVARDLSPDT 448 (455)
Q Consensus 413 ~Ll-~~d~~~il~~L~~~p~~-----d~~~Ll~~A~~l~~~~ 448 (455)
+|+ ..|+++++++|+++|.. |++.|++.|..++.++
T Consensus 295 ~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~~ 336 (345)
T 2qfz_A 295 EILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAF 336 (345)
T ss_dssp HHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHHH
Confidence 999 48999999999999984 6999999999998766
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-53 Score=418.58 Aligned_cols=282 Identities=23% Similarity=0.416 Sum_probs=233.4
Q ss_pred ccccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCC-CCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccC
Q 042357 106 YEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGY-LPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYN 184 (455)
Q Consensus 106 ~~~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~-l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 184 (455)
|++.++.++||+++++|||+. +|+.||++++|+ .+.+...|...+++.+..|..+......
T Consensus 32 w~~~~~~~~lr~l~~~GIP~~--lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~---------------- 93 (334)
T 2qq8_A 32 WETMWCSRKVRDLWWQGIPPS--VRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSE---------------- 93 (334)
T ss_dssp CC--CCCHHHHHHHHTCCCHH--HHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHhccChHHHHHHHHCCCCHH--HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhcccccc----------------
Confidence 456788899999999999999 999999999998 5666777777777777777665432210
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHH
Q 042357 185 DQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLF 264 (455)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y 264 (455)
.+..++|++.. .+.+..+||++||+||+|++++|+.++ .+++.|+|||.+|
T Consensus 94 ----------------~~~~d~~~~~~---------~~~~~~~~I~~Dv~RT~p~~~~F~~~~----~~~~~L~rIL~ay 144 (334)
T 2qq8_A 94 ----------------VENEDAGFSAA---------DREASLELIKLDISRTFPNLCIFQQGG----PYHDMLHSILGAY 144 (334)
T ss_dssp --------------------------------------CCHHHHHHHHHHTSSGGGCSSSTTS----TTHHHHHHHHHHH
T ss_pred ----------------Ccccccccccc---------cchhHHHHHHHHHhhcCCCchhhcCCC----chHHHHHHHHHHH
Confidence 01122232211 123457999999999999999999753 6789999999999
Q ss_pred HHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcc-cccccccCChhhHHHHHHHHHHHHHh
Q 042357 265 AKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVD-HFCQQLDNSSGGILSTLSHLAELLKA 343 (455)
Q Consensus 265 ~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~lL~~ 343 (455)
+.+||++|||||||+|||+|+++++ |++|||||+++|+++.. .| +..+.+++...+..++.+|+.
T Consensus 145 a~~~p~vgY~QGm~~iaa~lLl~~~-----------E~~aF~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~ll~~ 210 (334)
T 2qq8_A 145 TCYRPDVGYVQGMSFIAAVLILNLD-----------TADAFIAFSNLLNKPCQMAF---FRVDHGLMLTYFAAFEVFFEE 210 (334)
T ss_dssp HHHCTTTCCCTTHHHHHHHHHHHSC-----------HHHHHHHHHHHHTSHHHHHH---HSSCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcchhHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhhhHHhc---cCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 99999999999997532 22 223668899999999999999
Q ss_pred hcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhcCCHHHHH
Q 042357 344 NDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANL 423 (455)
Q Consensus 344 ~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~~d~~~il 423 (455)
++|+||+||.+. ++++.+|+++||+|+|++++|++.++||||+|+++|. .+++++|+|||...++.|+++|+++++
T Consensus 211 ~~P~L~~hL~~~-~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~---~~l~~valaiL~~~~~~Ll~~d~~~il 286 (334)
T 2qq8_A 211 NLPKLFAHFKKN-NLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMA 286 (334)
T ss_dssp HCHHHHHHHHHT-TCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHTHHHHHTCCHHHHH
T ss_pred HCHHHHHHHHHc-CCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999997 9999999999999999999999999999999999987 999999999999999999999999999
Q ss_pred HHHhCCCC-CCHHHHHHHHhhcCcccCCCC
Q 042357 424 QLLQHYPD-VNIEHLLQVARDLSPDTSSCS 452 (455)
Q Consensus 424 ~~L~~~p~-~d~~~Ll~~A~~l~~~~~~~~ 452 (455)
++|+++|. +|++.|+..|..++.+...++
T Consensus 287 ~~L~~lp~~~d~~~l~~~a~~l~~~~~~k~ 316 (334)
T 2qq8_A 287 QFLTRLPEDLPAEELFASIATIQMQSRNKK 316 (334)
T ss_dssp HHHHSCCTTCCHHHHHHHHHHCCCEETTEE
T ss_pred HHHHhCCCcCCHHHHHHHHHHccCcHHHhh
Confidence 99999999 899999999999997765443
No 4
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.9e-49 Score=386.57 Aligned_cols=248 Identities=24% Similarity=0.441 Sum_probs=218.3
Q ss_pred CCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCCCC
Q 042357 110 INLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNAD 189 (455)
Q Consensus 110 i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (455)
.+.++||+++++|||+. +|+.||+.++|+.+. ...++.|..+.++
T Consensus 21 ~~~~~l~~l~~~GIP~~--lR~~vW~~llg~~~~---------~~~~~~Y~~l~~~------------------------ 65 (310)
T 3hzj_A 21 ARPKGLSTLVKSGVPEA--LRAEVWQLLAGCHDN---------QAMLDRYRILITK------------------------ 65 (310)
T ss_dssp SCCTTHHHHHHHCCCGG--GHHHHHHHHTTCCCC---------HHHHHHHHHHTTS------------------------
T ss_pred cCHHHHHHHHHCCCCHH--HHHHHHHHHHCCCcc---------hhHHHHHHHHHhc------------------------
Confidence 35678999999999999 999999999998653 1234567665321
Q ss_pred CCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhCC
Q 042357 190 NDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNP 269 (455)
Q Consensus 190 ~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~p 269 (455)
.....++|++||+||+|++++|+..++ .+++.|+|||.+|+.+||
T Consensus 66 --------------------------------~~~~~~~I~~Dv~Rt~p~~~~f~~~~~---~~~~~L~~IL~ay~~~~p 110 (310)
T 3hzj_A 66 --------------------------------DSAQESVITRDIHRTFPAHDYFKDTGG---DGQESLYKICKAYSVYDE 110 (310)
T ss_dssp --------------------------------CCTTHHHHHHHHTTSSTTSTTTSSTTS---HHHHHHHHHHHHHHHHCT
T ss_pred --------------------------------cCCcHHHHHHHHHhhCCCchhhcCCCc---hhHHHHHHHHHHHHHHCC
Confidence 011147999999999999999998754 789999999999999999
Q ss_pred CCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcC--CcccccccccCChhhHHHHHHHHHHHHHhhcHH
Q 042357 270 VIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSD--SVDHFCQQLDNSSGGILSTLSHLAELLKANDEE 347 (455)
Q Consensus 270 ~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~--~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~ 347 (455)
++|||||||+||++|+++++ |++|||||+++|.. +.+.|.. +++++...+..+..+|+.++|+
T Consensus 111 ~igY~QGm~~iaa~lL~~~~-----------e~~aF~~l~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~ll~~~~p~ 175 (310)
T 3hzj_A 111 DIGYCQGQSFLAAVLLLHMP-----------EEQAFCVLVKIMYDYGLRDLYRN----NFEDLHCKFYQLERLMQEQLPD 175 (310)
T ss_dssp TTCSCTTHHHHHHHHHHHSC-----------HHHHHHHHHHHHHTSCGGGGTHH----HHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCccCCHHHHHHHHHHhCC-----------HHHHHHHHHHHHhcccccccccc----cHHHHHHHHHHHHHHHHHhChH
Confidence 99999999999999999996 99999999999986 4555543 6788999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhcCCHHHHHHHHh
Q 042357 348 LWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQ 427 (455)
Q Consensus 348 L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~~d~~~il~~L~ 427 (455)
||+||.+. ++++.+|+++||+|+|++++|++.++||||+|+++|. .+++++|+|+|..++++|+++|+++++++|+
T Consensus 176 L~~hL~~~-~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~---~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~ 251 (310)
T 3hzj_A 176 LHSHFSDL-NLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL---NIIFHVALALLKTSKEDLLQADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHH-TCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHc-CCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999997 9999999999999999999999999999999999988 8999999999999999999999999999997
Q ss_pred -CCCC-----CCHHHHHHHHhhcCc
Q 042357 428 -HYPD-----VNIEHLLQVARDLSP 446 (455)
Q Consensus 428 -~~p~-----~d~~~Ll~~A~~l~~ 446 (455)
++|. .|++.|++.|..+..
T Consensus 252 ~~lp~~~~~~~d~~~ll~~A~~l~~ 276 (310)
T 3hzj_A 252 VQLPKRYRAEENARRLMEQACNIKV 276 (310)
T ss_dssp THHHHTTCSHHHHHHHHHHHHHSCC
T ss_pred HhCcccccccccHHHHHHHHHhcCC
Confidence 4553 589999999999874
No 5
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.8e-49 Score=394.82 Aligned_cols=257 Identities=21% Similarity=0.387 Sum_probs=218.1
Q ss_pred cCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCCC
Q 042357 109 EINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNA 188 (455)
Q Consensus 109 ~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (455)
..+.++||+++++|||+. +|+.||++|+|+.+... .+.+.....+..|.++.++.
T Consensus 46 ~~~~~~l~~~~~~GIP~~--lR~~vW~~Llg~~~~~~-~~~~~~~~~~~~Y~~l~~~~---------------------- 100 (331)
T 3qye_A 46 KFDMEKMHSAVGQGVPRH--HRGEIWKFLAEQFHLKH-QFPSKQQPKDVPYKELLKQL---------------------- 100 (331)
T ss_dssp CCCHHHHHHHHHTCCCGG--GHHHHHHHHHHHHHHHC-CCCSSSCCCCCCHHHHTTSC----------------------
T ss_pred cCCHHHHHHHHHcCCCHH--HHHHHHHHHhCcchhhh-cchhhhhhchHHHHHHHHhc----------------------
Confidence 568899999999999999 99999999999733100 00000111223444442210
Q ss_pred CCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHhC
Q 042357 189 DNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLN 268 (455)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~~ 268 (455)
....++|++||+||+|++++|+.+.+ .+++.|+|||.+|+.+|
T Consensus 101 ----------------------------------~~~~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~ay~~~~ 143 (331)
T 3qye_A 101 ----------------------------------TSQQHAILIDLGRTFPTHPYFSAQLG---AGQLSLYNILKAYSLLD 143 (331)
T ss_dssp ----------------------------------CTTHHHHHHHHTTSSTTSTTTCSTTC---HHHHHHHHHHHHHHHHC
T ss_pred ----------------------------------CCchhHHHHhhcccCCCchhhcCCCc---ccHHHHHHHHHHHHHHC
Confidence 01147999999999999999998754 78999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCC--cccccccccCChhhHHHHHHHHHHHHHhhcH
Q 042357 269 PVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDS--VDHFCQQLDNSSGGILSTLSHLAELLKANDE 346 (455)
Q Consensus 269 p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP 346 (455)
|++|||||||+||++|+++++ |++|||||+++|... .+.|. .++.+++..+..+..+|+.++|
T Consensus 144 p~igY~QGm~~i~a~ll~~~~-----------E~~aF~~l~~l~~~~~~~~~~~----~~~~~~~~~~~~l~~ll~~~~p 208 (331)
T 3qye_A 144 QEVGYCQGLSFVAGILLLHMS-----------EEEAFKMLKFLMFDMGLRKQYR----PDMIILQIQMYQLSRLLHDYHR 208 (331)
T ss_dssp TTTSSCTTHHHHHHHHHTTSC-----------HHHHHHHHHHHHTTTCGGGGGS----TTCHHHHHHHHHHHHHHHHHCH
T ss_pred CCccccccHHHHHHHHHHHhh-----------HHHHHHHHHHHHHhcCchhcCC----CChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 999999999999874 44443 3778999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhcC-CHHHHHHH
Q 042357 347 ELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSG-DFVANLQL 425 (455)
Q Consensus 347 ~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~~-d~~~il~~ 425 (455)
+||+||.+. ++.+.+|+++||+|+|++++|++.++||||+|+++|. .+++++|+|+|..+++.|+++ |+++++++
T Consensus 209 ~L~~hL~~~-~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~---~~l~~valaiL~~~~~~ll~~~~~~~il~~ 284 (331)
T 3qye_A 209 DLYNHLEEH-EIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT---EVIFKVALSLLGSHKPLILQHENLETIVDF 284 (331)
T ss_dssp HHHHHHHHT-TCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHc-CCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999997 9999999999999999999999999999999999988 899999999999999999985 89999999
Q ss_pred HhC-CCCC---CHHHHHHHHhhcCc
Q 042357 426 LQH-YPDV---NIEHLLQVARDLSP 446 (455)
Q Consensus 426 L~~-~p~~---d~~~Ll~~A~~l~~ 446 (455)
|++ +|.+ |++.+++.|..++.
T Consensus 285 l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 285 IKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 998 5544 78999999998875
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=3.8e-48 Score=378.38 Aligned_cols=257 Identities=20% Similarity=0.291 Sum_probs=216.6
Q ss_pred ccccCCHHHHHHHHhcC---CCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccc
Q 042357 106 YEKEINLEKLQRIADTG---LPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSN 182 (455)
Q Consensus 106 ~~~~i~~~~Lr~l~~~G---iP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~ 182 (455)
.++.+|+++||++++.| +|+. +|+.||++|+|+.+...+. .|....
T Consensus 28 ~~~~~dl~~Lr~l~~~~~g~~p~~--lR~~vW~~Llg~~~~~~~~----------~~~~~~------------------- 76 (292)
T 4hl4_A 28 NSDPTDVAALRRMAISEGGLLTDE--IRRKVWPKLLNVNANDPPP----------ISGKNL------------------- 76 (292)
T ss_dssp TSSSCCHHHHHHHHHSTTCSCCHH--HHHHHHHHHTTCCSCSCCS----------CCCTTH-------------------
T ss_pred cCCcccHHHHHHHHcCCCCCCChh--HHHHHHHHHhCCCcccCCC----------chhhhh-------------------
Confidence 44678999999999863 6777 9999999999997653321 010000
Q ss_pred cCCCCCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHH
Q 042357 183 YNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILL 262 (455)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~ 262 (455)
..+.+..+||++||+||+|+++.|..+.. ....++.|.|||.
T Consensus 77 -------------------------------------~~~~~~~~qI~~Dv~RT~~~~~~~~~~~~-~~~~~~~L~~iL~ 118 (292)
T 4hl4_A 77 -------------------------------------RQMSKDYQQVLLDVRRSLRRFPPGMPEEQ-REGLQEELIDIIL 118 (292)
T ss_dssp -------------------------------------HHHCTTHHHHHHHHHTTGGGSCTTSCHHH-HHHHHHHHHHHHH
T ss_pred -------------------------------------cccchhHHHHHHhhhhhhhhccCCCCHHH-HHHHHHHHHHHHH
Confidence 01123468999999999999998865321 1267889999999
Q ss_pred HHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHH
Q 042357 263 LFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLK 342 (455)
Q Consensus 263 ~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~ 342 (455)
+|+.+||++|||||||+||++|++++. |++|||||+++|+...+.|+ ..++.++...+..+..+|+
T Consensus 119 ay~~~~p~vgY~QGm~~iaa~lLl~~~-----------e~~aF~~l~~l~~~~l~~~~---~~~~~~~~~~~~~l~~ll~ 184 (292)
T 4hl4_A 119 LILERNPQLHYYQGYHDIVVTFLLVVG-----------ERLATSLVEKLSTHHLRDFM---DPTMDNTKHILNYLMPIID 184 (292)
T ss_dssp HHHHHCTTCCCCTTHHHHHHHHHHHHC-----------HHHHHHHHHHHHHTTTTGGG---CSSSCTTTGGGGGHHHHHH
T ss_pred HHHHHCCCCCeeccHHHHHHHHHHHcC-----------HHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 99999999999997554443 3466778888999999999
Q ss_pred hhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCC-hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhcC--CH
Q 042357 343 ANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFN-LQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSG--DF 419 (455)
Q Consensus 343 ~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~-~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~~--d~ 419 (455)
.++|+||+||.+. ++. .+|+++||+|+|++++| ++.++||||+++++|. .+++|+|+|++...+++|+++ |+
T Consensus 185 ~~~P~L~~hL~~~-~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~---~~~~~v~~ail~~~~~~Ll~~~~d~ 259 (292)
T 4hl4_A 185 QVNPELHDFMQSA-EVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHP---LMPIYFAAVIVLYREQEVLDCDCDM 259 (292)
T ss_dssp HHCHHHHHHHC-C-CCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT---THHHHHHHHHHHHTHHHHHTSCCST
T ss_pred HHCHHHHHHHHHc-CCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 9999999999996 885 68999999999999996 9999999999999987 899999999999999999974 78
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHhhcCcccCC
Q 042357 420 VANLQLLQHYPD-VNIEHLLQVARDLSPDTSS 450 (455)
Q Consensus 420 ~~il~~L~~~p~-~d~~~Ll~~A~~l~~~~~~ 450 (455)
+.++.+|+++|. +|++.|++.|..++.++++
T Consensus 260 ~~l~~~l~~lp~~~d~~~li~~A~~l~~~~pp 291 (292)
T 4hl4_A 260 ASVHHLLSQIPQDLPYETLISRAGDLFVQFPP 291 (292)
T ss_dssp THHHHHHHSCCSSCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCC
Confidence 999999999996 9999999999999988765
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=344.09 Aligned_cols=272 Identities=19% Similarity=0.275 Sum_probs=211.7
Q ss_pred hhhhhhhhhhcCc-cccCCCccchhhhhhhhhccccccccccCCHHHHHHHHhcC-CCCCCCChHHHHHHHhCCCCCChh
Q 042357 69 MEEHFESRVRRNP-KKYGSRLVSVKEVIAADDKRSDLEYEKEINLEKLQRIADTG-LPDGGGLRATAWKLLLGYLPSCRD 146 (455)
Q Consensus 69 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Lr~l~~~G-iP~~~~~R~~vW~~LLg~l~~~~~ 146 (455)
|.+..++..|... ++.+-+.++..+.+.. +..++.+|.++||++||+| ||+. +|+.||++|+|++|.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~------ll~~~~~d~~~L~~~~~~g~IP~~--~R~~vWklLlGylP~~~~ 73 (294)
T 3qwl_A 2 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEI------LLKDDRLDTEKLCTFSQRFPLPSM--YRALVWKVLLGILPPHHE 73 (294)
T ss_dssp --------------------CHHHHHHHHH------HTTSSBCCHHHHHHHHHHSCCCHH--HHHHHHHHHTTSSCSBGG
T ss_pred CCCcchhhhHHHHHHHcCCcchhHHHHHHH------HhcCCCCCHHHHHHHHcCCCCCHH--HHHHHHHHHcCCCCCCch
Confidence 3445567777776 4667888877776665 6778899999999999999 9999 999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCCCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHH
Q 042357 147 LWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIA 226 (455)
Q Consensus 147 ~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~ 226 (455)
.|...++++|++|.+++++... .
T Consensus 74 ~~~~~l~~kr~eY~~l~~~~~~---------------------------------------------------------~ 96 (294)
T 3qwl_A 74 SHAKVMMYRKEQYLDVLHALKV---------------------------------------------------------V 96 (294)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------------T
T ss_pred hHHHHHHHHHHHHHHHHHhhhh---------------------------------------------------------h
Confidence 9999999999999999876311 1
Q ss_pred HHHHHhhcccCCCCcCCCCcchhhhHHHHHHHHHHHHHHHh----------CCCCCCCCCchhhHHHHHHHhcCCCchhh
Q 042357 227 EQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKL----------NPVIRYVQGMNEVLAPMYYVFSTDPDEQN 296 (455)
Q Consensus 227 ~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~rIL~~y~~~----------~p~igY~QGm~~i~a~ll~~~~~d~~~~~ 296 (455)
++|+.+.++ ....+..|... +++. ++|||..||++++.++.+
T Consensus 97 r~I~~~tP~---------------------~~vfl~~~~~~~~~l~~~~~~~~~~-~~~~~~~Iaa~ll~l~~~------ 148 (294)
T 3qwl_A 97 RFVSDATPQ---------------------AEVYLRMYQLESGKLPRSPSFPLEP-DDEVFLAIAKAMEEMVED------ 148 (294)
T ss_dssp TSCCTTSCH---------------------HHHHHHHHHHHHTCCCSSTTSCCCH-HHHHHHHHHHHHHHHCCS------
T ss_pred hhhhccCch---------------------HHHHHHHHHcccccccccccCCccc-chhhHHHHHHHHHHHhCC------
Confidence 122211110 01111122211 2232 459999999999998877
Q ss_pred hhhhhHHHHHHHHHHHcCCcccccccccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccC
Q 042357 297 AENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEF 376 (455)
Q Consensus 297 ~~~~E~daF~~f~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l 376 (455)
|++|||||+++|+++.++|.. +++|++.. ++.+|+.++|+||+||.+. ++.+.+++.+||+|+|++++
T Consensus 149 ----E~dAFW~f~~Lm~~l~~~f~~----~~~gl~~~---l~~LL~~~dP~L~~HL~~~-~i~~~~~~~rWfl~lF~~~~ 216 (294)
T 3qwl_A 149 ----SVDCYWITRRFVNQLNTKYRD----SLPQLPKA---FEQYLNLEDGRLLTHLRMC-SAAPKLPYDLWFKRCFAGCL 216 (294)
T ss_dssp ----HHHHHHHHHHHHHHHHTTTTT----TGGGHHHH---HHHHHHHHCHHHHHHHHHT-TCGGGSCHHHHHTSTTTTTS
T ss_pred ----HHHHHHHHHHHHHHHHHhhCC----ChhHHHHH---HHHHHHHHHHHHHHHHHHC-CCCchhHHHHHHHHHhccCC
Confidence 999999999999998777755 67788765 4899999999999999997 89888777799999999999
Q ss_pred ChHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHhhHhhhcCCH-HHHHHHHhCCCCCCHHHHHHHHhhcCccc
Q 042357 377 NLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDF-VANLQLLQHYPDVNIEHLLQVARDLSPDT 448 (455)
Q Consensus 377 ~~~~~~riWD~~l~~g~~~~~~l~~i~lAiL~~~~~~Ll~~d~-~~il~~L~~~p~~d~~~Ll~~A~~l~~~~ 448 (455)
|++.++||||+++++|. .+++++|+|+|..+++.|+++++ ++++++|+++|..|++.|++.|..++.+.
T Consensus 217 p~~~vlRlWD~~~~~~~---~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~di~~ll~~A~~l~~~~ 286 (294)
T 3qwl_A 217 PESSLQRVWDKVVSGSC---KILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKH 286 (294)
T ss_dssp CHHHHHHHHHHHHTTCS---THHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCcccHHHHHHHHHHHHHHc
Confidence 99999999999999776 89999999999999999999877 89999999999999999999999998876
No 8
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=48.24 E-value=8.3 Score=21.20 Aligned_cols=19 Identities=42% Similarity=0.756 Sum_probs=15.0
Q ss_pred chhHHHhhhhhhhhhhhcC
Q 042357 62 EDDYVEMMEEHFESRVRRN 80 (455)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~ 80 (455)
++||++|++--++.++++.
T Consensus 2 eeeyqemlenlreaevkkn 20 (26)
T 2dpr_A 2 EEEYQEMLENLREAEVKKN 20 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 4569999998888777654
No 9
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=15.03 E-value=52 Score=24.12 Aligned_cols=10 Identities=40% Similarity=0.710 Sum_probs=8.6
Q ss_pred CCCCCchhhH
Q 042357 272 RYVQGMNEVL 281 (455)
Q Consensus 272 gY~QGm~~i~ 281 (455)
-|.|||.+++
T Consensus 17 lyfqgM~~~a 26 (96)
T 2js3_A 17 LYFQGMTDTA 26 (96)
T ss_dssp BTTBSTTTHH
T ss_pred eeeccccccC
Confidence 4999999886
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=12.69 E-value=7.1e+02 Score=24.62 Aligned_cols=48 Identities=4% Similarity=0.090 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCc
Q 042357 347 ELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGI 395 (455)
Q Consensus 347 ~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~ 395 (455)
+++..+.+. |+.|...++.-++..|++.=.++.+.++|+.+...|..+
T Consensus 126 ~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 126 DMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 345556675 899999999999999999999999999999999887543
Done!