Query 042358
Match_columns 193
No_of_seqs 124 out of 1073
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0103 RpsI Ribosomal protein 100.0 1.7E-36 3.6E-41 242.6 8.0 96 97-193 5-100 (130)
2 CHL00079 rps9 ribosomal protei 100.0 2.8E-36 6.1E-41 241.0 8.8 97 97-193 4-100 (130)
3 PRK00132 rpsI 30S ribosomal pr 100.0 7.1E-36 1.5E-40 238.6 9.2 96 97-193 5-100 (130)
4 KOG1697 Mitochondrial/chloropl 100.0 2.3E-36 5.1E-41 264.1 5.8 175 16-193 69-245 (275)
5 TIGR03627 arch_S9P archaeal ri 100.0 3.1E-34 6.8E-39 229.1 8.3 93 98-192 2-97 (130)
6 PRK00474 rps9p 30S ribosomal p 100.0 3.9E-34 8.4E-39 229.6 8.8 94 97-192 4-101 (134)
7 PF00380 Ribosomal_S9: Ribosom 100.0 1.2E-34 2.5E-39 228.8 4.7 91 102-193 1-91 (121)
8 PTZ00086 40S ribosomal protein 100.0 1.6E-33 3.4E-38 229.2 8.5 94 97-192 10-110 (147)
9 PLN00210 40S ribosomal protein 100.0 4.2E-33 9E-38 225.3 8.1 95 96-192 3-104 (141)
10 KOG1753 40S ribosomal protein 99.8 5.2E-19 1.1E-23 143.0 8.1 91 94-186 5-97 (145)
11 KOG0058 Peptide exporter, ABC 93.7 0.061 1.3E-06 54.0 3.5 80 101-185 503-623 (716)
12 TIGR02868 CydC thiol reductant 86.6 0.9 1.9E-05 42.3 4.2 80 101-182 370-487 (529)
13 PTZ00265 multidrug resistance 81.8 1.7 3.6E-05 46.7 4.2 81 99-182 1258-1375(1466)
14 COG1124 DppF ABC-type dipeptid 79.6 0.18 3.9E-06 45.1 -3.2 27 102-128 43-72 (252)
15 PRK10790 putative multidrug tr 78.4 3.1 6.6E-05 39.5 4.4 81 101-182 376-493 (592)
16 COG3840 ThiQ ABC-type thiamine 77.9 3.1 6.8E-05 36.8 4.0 69 112-185 48-149 (231)
17 TIGR03796 NHPM_micro_ABC1 NHPM 77.9 4.4 9.4E-05 39.4 5.4 81 101-182 514-632 (710)
18 COG1132 MdlB ABC-type multidru 77.4 3 6.5E-05 39.4 4.0 77 104-183 367-483 (567)
19 TIGR00958 3a01208 Conjugate Tr 77.3 3.5 7.7E-05 40.4 4.6 81 101-182 516-634 (711)
20 TIGR01193 bacteriocin_ABC ABC- 77.3 4.2 9.2E-05 39.6 5.1 80 102-182 510-628 (708)
21 COG4988 CydD ABC-type transpor 77.0 3.1 6.8E-05 41.1 4.1 77 104-183 359-474 (559)
22 TIGR03375 type_I_sec_LssB type 76.3 4.5 9.9E-05 39.2 5.0 81 101-182 500-618 (694)
23 COG2884 FtsE Predicted ATPase 75.5 4.5 9.8E-05 35.8 4.3 39 139-182 116-154 (223)
24 PRK11174 cysteine/glutathione 75.5 5.2 0.00011 37.8 5.0 81 101-182 385-502 (588)
25 COG2274 SunT ABC-type bacterio 75.1 4.4 9.5E-05 40.8 4.6 74 105-182 512-626 (709)
26 PRK10787 DNA-binding ATP-depen 68.8 8.8 0.00019 38.9 5.2 50 110-166 614-674 (784)
27 TIGR03797 NHPM_micro_ABC2 NHPM 68.2 9.2 0.0002 37.1 5.0 81 101-182 488-605 (686)
28 TIGR02857 CydD thiol reductant 67.5 8.4 0.00018 35.9 4.5 80 102-182 358-475 (529)
29 TIGR01846 type_I_sec_HlyB type 66.4 12 0.00025 36.5 5.4 80 102-182 493-610 (694)
30 KOG0055 Multidrug/pheromone ex 65.9 11 0.00025 40.4 5.5 66 115-185 1042-1145(1228)
31 KOG0055 Multidrug/pheromone ex 62.2 8.8 0.00019 41.2 3.9 68 114-185 404-508 (1228)
32 PLN03130 ABC transporter C fam 60.4 14 0.0003 40.4 5.0 79 101-182 1274-1391(1622)
33 COG1126 GlnQ ABC-type polar am 60.4 14 0.00029 33.2 4.2 75 105-185 41-155 (240)
34 PRK11176 lipid transporter ATP 58.9 16 0.00034 34.5 4.6 81 101-182 378-497 (582)
35 PLN03232 ABC transporter C fam 57.2 16 0.00036 39.3 4.9 81 101-182 1271-1388(1495)
36 PF02601 Exonuc_VII_L: Exonucl 57.1 10 0.00023 33.4 2.9 45 139-183 58-106 (319)
37 COG4608 AppF ABC-type oligopep 56.2 5.1 0.00011 36.2 0.9 75 101-186 48-129 (268)
38 cd03214 ABC_Iron-Siderophores_ 54.6 15 0.00032 29.4 3.2 71 105-182 38-114 (180)
39 TIGR01842 type_I_sec_PrtD type 54.5 21 0.00045 33.7 4.6 29 101-129 353-384 (544)
40 TIGR02204 MsbA_rel ABC transpo 54.2 20 0.00043 33.7 4.5 30 101-130 375-407 (576)
41 TIGR00957 MRP_assoc_pro multi 53.9 19 0.00041 38.9 4.7 80 102-182 1322-1438(1522)
42 PF03755 YicC_N: YicC-like fam 53.5 51 0.0011 26.7 6.2 74 108-182 7-89 (159)
43 TIGR00763 lon ATP-dependent pr 52.9 44 0.00094 33.7 6.8 91 88-180 592-696 (775)
44 PRK13657 cyclic beta-1,2-gluca 52.7 18 0.00038 34.4 3.9 81 101-182 370-488 (588)
45 TIGR02203 MsbA_lipidA lipid A 51.8 25 0.00053 33.0 4.7 81 101-182 367-486 (571)
46 COG3839 MalK ABC-type sugar tr 48.9 24 0.00052 32.7 4.1 64 114-182 54-150 (338)
47 PRK15317 alkyl hydroperoxide r 46.8 32 0.00069 32.4 4.6 23 153-175 209-231 (517)
48 PRK11160 cysteine/glutathione 45.8 35 0.00077 32.6 4.8 81 101-182 375-492 (574)
49 PRK00286 xseA exodeoxyribonucl 45.5 22 0.00047 33.0 3.2 45 138-183 178-223 (438)
50 TIGR01192 chvA glucan exporter 43.4 24 0.00053 33.8 3.3 31 151-182 458-488 (585)
51 KOG3288 OTU-like cysteine prot 42.5 21 0.00046 32.8 2.6 29 151-179 272-300 (307)
52 COG1135 AbcC ABC-type metal io 41.4 40 0.00087 31.7 4.2 39 92-130 32-73 (339)
53 TIGR00237 xseA exodeoxyribonuc 40.6 28 0.00061 32.8 3.2 45 138-182 172-217 (432)
54 PRK10789 putative multidrug tr 40.3 48 0.001 31.6 4.7 80 102-182 351-468 (569)
55 COG1750 Archaeal serine protea 38.1 69 0.0015 32.1 5.5 70 111-183 56-132 (579)
56 PF13541 ChlI: Subunit ChlI of 37.2 99 0.0021 24.4 5.4 70 111-184 3-73 (121)
57 PF08346 AntA: AntA/AntB antir 36.4 13 0.00028 27.2 0.2 62 122-183 1-68 (71)
58 TIGR01194 cyc_pep_trnsptr cycl 36.0 70 0.0015 30.5 5.1 28 102-129 378-408 (555)
59 TIGR03140 AhpF alkyl hydropero 35.8 62 0.0014 30.5 4.7 25 152-176 209-233 (515)
60 cd03247 ABCC_cytochrome_bd The 34.7 38 0.00083 26.9 2.7 26 105-130 41-69 (178)
61 TIGR01271 CFTR_protein cystic 33.8 62 0.0013 35.2 4.8 80 102-182 1255-1370(1490)
62 TIGR02653 Lon_rel_chp conserve 33.1 44 0.00096 34.0 3.4 72 109-180 514-593 (675)
63 COG4618 ArpD ABC-type protease 31.7 21 0.00045 35.6 0.8 117 63-182 334-489 (580)
64 PTZ00367 squalene epoxidase; P 31.5 64 0.0014 31.5 4.1 39 137-175 15-53 (567)
65 COG4525 TauB ABC-type taurine 30.8 1.2E+02 0.0026 27.4 5.4 76 105-186 44-152 (259)
66 PF05362 Lon_C: Lon protease ( 30.4 76 0.0017 27.1 4.0 16 110-125 46-61 (204)
67 COG3526 Uncharacterized protei 29.8 41 0.00088 26.3 2.0 34 108-141 37-78 (99)
68 cd03222 ABC_RNaseL_inhibitor T 29.8 60 0.0013 26.7 3.1 25 104-128 37-64 (177)
69 COG1127 Ttg2A ABC-type transpo 29.3 73 0.0016 29.0 3.8 30 100-129 42-74 (263)
70 COG4604 CeuD ABC-type enteroch 28.4 44 0.00096 30.1 2.2 42 114-161 52-93 (252)
71 TIGR02903 spore_lon_C ATP-depe 27.9 4.8E+02 0.01 25.8 9.5 61 115-183 474-539 (615)
72 PRK00555 galactokinase; Provis 27.5 4.8E+02 0.01 23.8 8.9 33 152-185 90-125 (363)
73 PRK10522 multidrug transporter 26.4 1.7E+02 0.0036 27.8 5.8 29 102-130 359-390 (547)
74 COG4987 CydC ABC-type transpor 25.8 1.3E+02 0.0028 30.2 5.1 77 104-183 376-492 (573)
75 PTZ00243 ABC transporter; Prov 25.4 1.3E+02 0.0028 33.0 5.5 80 101-182 1345-1462(1560)
76 cd03246 ABCC_Protease_Secretio 25.0 72 0.0016 25.2 2.8 26 105-130 41-69 (173)
77 COG1829 Predicted archaeal kin 25.0 2.8E+02 0.006 25.6 6.7 63 108-183 38-106 (283)
78 COG3842 PotA ABC-type spermidi 24.4 96 0.0021 29.0 3.8 24 105-128 44-70 (352)
79 PF10653 Phage-A118_gp45: Prot 24.1 33 0.00071 24.6 0.5 31 116-151 13-43 (62)
80 COG1570 XseA Exonuclease VII, 23.8 75 0.0016 30.8 3.0 29 138-166 178-206 (440)
81 cd03228 ABCC_MRP_Like The MRP 21.8 1.3E+02 0.0028 23.7 3.6 25 105-129 41-68 (171)
82 TIGR03329 Phn_aa_oxid putative 21.6 84 0.0018 29.0 2.8 26 151-176 20-45 (460)
83 COG0039 Mdh Malate/lactate deh 21.5 71 0.0015 29.4 2.3 56 120-183 185-241 (313)
84 KOG1068 Exosomal 3'-5' exoribo 21.2 2E+02 0.0043 26.0 4.9 54 122-179 91-149 (245)
85 COG3407 MVD1 Mevalonate pyroph 21.2 3.1E+02 0.0066 25.7 6.4 72 105-182 43-121 (329)
86 COG4167 SapF ABC-type antimicr 21.1 63 0.0014 29.1 1.8 24 105-128 52-78 (267)
87 COG1125 OpuBA ABC-type proline 20.6 77 0.0017 29.4 2.3 18 113-130 51-68 (309)
88 PF06905 FAIM1: Fas apoptotic 20.5 1E+02 0.0022 26.3 2.9 34 99-132 55-92 (177)
No 1
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-36 Score=242.59 Aligned_cols=96 Identities=36% Similarity=0.567 Sum_probs=93.2
Q ss_pred eEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHH
Q 042358 97 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGV 176 (193)
Q Consensus 97 ~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAI 176 (193)
.++++||||+|+|||||.||+|+|+|||+|+++||+ ++.++++|++||.+++..++|||+|+|+|||++|||+||||||
T Consensus 5 ~~~~tGkRK~AvArv~l~~g~G~i~vNg~~~e~yf~-~e~~r~~i~~Pl~l~~~~~~~Di~v~V~GGG~~GQA~AiR~gI 83 (130)
T COG0103 5 QVYTTGKRKSAVARVRLVPGKGKITVNGRPLELYFP-RETLRMKIMQPLLLTGTVGKFDIDVTVKGGGISGQAGAIRHGI 83 (130)
T ss_pred eeeeeccccceEEEEEEEcCCcEEEECCcCHHHhcc-hHHHHHHHhhhHHHhCccccccEEEEEecCCchHHHHHHHHHH
Confidence 678999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCccCcCCCCC
Q 042358 177 ARALLKFCTSVPGIMES 193 (193)
Q Consensus 177 ARALv~~~p~~R~~Lk~ 193 (193)
||||++++|++|+.||+
T Consensus 84 aRAL~~~~~~lr~~lk~ 100 (130)
T COG0103 84 ARALVEYDPELRPALKK 100 (130)
T ss_pred HHHHHHHCHHHHHHHHH
Confidence 99999999999998873
No 2
>CHL00079 rps9 ribosomal protein S9
Probab=100.00 E-value=2.8e-36 Score=240.98 Aligned_cols=97 Identities=52% Similarity=0.769 Sum_probs=92.6
Q ss_pred eEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHH
Q 042358 97 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGV 176 (193)
Q Consensus 97 ~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAI 176 (193)
.++++||||+|+|+|||+||+|+|+|||+|+++||++++.++++|++||.+++..++|||+|+|+|||.+|||+||||||
T Consensus 4 ~~~~~GrRKta~Arv~l~~G~G~i~INg~~~~~yf~~~~~~~~~v~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Air~aI 83 (130)
T CHL00079 4 LYIGTGRRKTAVAQVRLVPGSGEIIINGKPAEEYLQYNPNYLNAIKAPLKLLGLENKYDIIVKVKGGGLTGQAEAIRLGL 83 (130)
T ss_pred EEEEEeeCCCeEEEEEEEcCCcEEEECCCcHHHHCCcCHHHHHHHHHHHHHhCcCCceeEEEEEEcCChhHHHHHHHHHH
Confidence 46799999999999999999999999999999999866778899999999999999999999999999999999999999
Q ss_pred HHHHHhhCccCcCCCCC
Q 042358 177 ARALLKFCTSVPGIMES 193 (193)
Q Consensus 177 ARALv~~~p~~R~~Lk~ 193 (193)
||||++++|++++.||+
T Consensus 84 araLv~~~~~~k~~Lk~ 100 (130)
T CHL00079 84 ARALCKINPENRKSLKK 100 (130)
T ss_pred HHHHHHHCHHHHHHHHH
Confidence 99999999999998874
No 3
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=100.00 E-value=7.1e-36 Score=238.56 Aligned_cols=96 Identities=42% Similarity=0.679 Sum_probs=92.5
Q ss_pred eEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHH
Q 042358 97 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGV 176 (193)
Q Consensus 97 ~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAI 176 (193)
.++++||||+|+|+||++||+|+|+|||+|+++||+ ++.++++|++||.+++..++|||+|+|+|||++|||+||||||
T Consensus 5 ~~~~~GrRK~a~A~v~l~~G~G~i~INg~~~~~yf~-~~~~r~~i~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Air~ai 83 (130)
T PRK00132 5 QYYGTGRRKTAVARVRLKPGSGKITVNGRDLEEYFP-RETLRMVVRQPLELTETEGKFDVYVTVKGGGISGQAGAIRHGI 83 (130)
T ss_pred eEEEEeeCCCeEEEEEEEcCccEEEECCEeHHHHcC-CHHHHHHHHHHHHHhCccCceeEEEEEEcCCHHHHHHHHHHHH
Confidence 457999999999999999999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCccCcCCCCC
Q 042358 177 ARALLKFCTSVPGIMES 193 (193)
Q Consensus 177 ARALv~~~p~~R~~Lk~ 193 (193)
||||+.++|++|+.||+
T Consensus 84 araLv~~~~~~r~~Lk~ 100 (130)
T PRK00132 84 ARALLEYDPDLRPALKK 100 (130)
T ss_pred HHHHHHHCHHHHHHHHH
Confidence 99999999999998873
No 4
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-36 Score=264.06 Aligned_cols=175 Identities=28% Similarity=0.301 Sum_probs=158.9
Q ss_pred ccccccccccccceeeeccccCCCCCCceecccccccc-cCCCCCCCCceEEeeeccC-CcchhhhhhhhhhhccCCCCc
Q 042358 16 SPAISPLTSSLSSLSFSSQISQKPGIPFVSLHRSKSIS-ISPKNDKTPKLVVSATEAA-PAELETTDLKKYVKSRLPGGF 93 (193)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~e~~~l~~~v~~r~~~~~ 93 (193)
|+++-....++...+++++-+|.+++ ..|.+.+.+. ...+..+..++.++...++ +.+.|+..+++|+++..+.+.
T Consensus 69 ai~~l~psg~~d~~arp~m~~~~~et--~~~~ll~di~~~~~~~~~~~~~s~~~l~s~p~~~~e~~f~~~~~k~~~~~g~ 146 (275)
T KOG1697|consen 69 AISYLFPSGLFDPNARPVMAFQFDET--KYYQLLHDIGVLTNKLAKLYSISIEHLLSSPYSAIEEKFLKRFRKPLDESGK 146 (275)
T ss_pred HHHHhccccccCccccccccccCCcc--hHHHHHHHHHhhhhhhhhhhhhHHHHHhhCchhHHHHHHHHHHHhcccccCC
Confidence 56777788899999999999999998 7888888887 6777778888888888766 455666699999999999999
Q ss_pred cceeEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHH
Q 042358 94 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAIT 173 (193)
Q Consensus 94 ~~~~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIR 173 (193)
...+++++||||+|+|+|++.||+|+|.|||+++++||+ ...+|+.++.||.+++.+++|||+++|+|||++||++|||
T Consensus 147 ~~~~~~~~g~rK~a~A~V~v~~GtGk~~vNg~~~~~yF~-~~~~Re~ll~Pl~~~~~lg~~dv~atv~GGG~sgqagAI~ 225 (275)
T KOG1697|consen 147 PEVRIIAVGRRKCARATVKVQPGTGKFDVNGRDLDVYFQ-HLQHREQLLYPLAVSESLGKYDVTATVSGGGPSGQAGAIR 225 (275)
T ss_pred CceeeeeccceecceeEEEEecCceeEEecchhHHhHhc-cchhHHHHhhhHHHhccccceeEEEEecCCCccchhHHHH
Confidence 999999999999999999999999999999999999999 6678899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccCcCCCCC
Q 042358 174 LGVARALLKFCTSVPGIMES 193 (193)
Q Consensus 174 lAIARALv~~~p~~R~~Lk~ 193 (193)
|||||||+.++|+.+..||.
T Consensus 226 ~gia~aL~~~~p~~~~~lr~ 245 (275)
T KOG1697|consen 226 LGIAKALASFEPDLIEPLRL 245 (275)
T ss_pred HHHHHHHHhcCHHHhhHHHh
Confidence 99999999999999988873
No 5
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=100.00 E-value=3.1e-34 Score=229.10 Aligned_cols=93 Identities=34% Similarity=0.505 Sum_probs=88.0
Q ss_pred EEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhC-ccCccceEEEEecCChhhHHHHHHHHH
Q 042358 98 IFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLG-YETSYDVFVKAHGGGLSGQAQAITLGV 176 (193)
Q Consensus 98 ~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~-~~~kyDI~i~VkGGG~sGQA~AIRlAI 176 (193)
++++||||+|+|+|||+||+|+|+|||+|+++|| ++.+++.|++||.+++ +.++|||+|+|+|||++|||+||||||
T Consensus 2 ~~~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y~--~~~~r~~i~~Pl~~~~~~~~~~Dv~i~V~GGG~sgQa~Air~aI 79 (130)
T TIGR03627 2 VITSGKRKTAIARATIREGKGRVRINGVPVELYP--PELARLKIMEPLILAGDIAKEVDIDVKVSGGGIMGQADAARTAI 79 (130)
T ss_pred eEEEeeCCCeEEEEEEEcCceEEEECCEeHHHhC--CHHHHHHHHHHHHHHhccccCccEEEEEEcCChhHHHHHHHHHH
Confidence 5799999999999999999999999999999886 6889999999999997 899999999999999999999999999
Q ss_pred HHHHHhh--CccCcCCCC
Q 042358 177 ARALLKF--CTSVPGIME 192 (193)
Q Consensus 177 ARALv~~--~p~~R~~Lk 192 (193)
||||+.+ +|++|+.||
T Consensus 80 araL~~~~~~~~~r~~lk 97 (130)
T TIGR03627 80 ARGLVEFTGDKELRDAFR 97 (130)
T ss_pred HHHHHHhccCHHHHHHHH
Confidence 9999999 788888775
No 6
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=100.00 E-value=3.9e-34 Score=229.57 Aligned_cols=94 Identities=31% Similarity=0.441 Sum_probs=89.0
Q ss_pred eEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhC--ccCccceEEEEecCChhhHHHHHHH
Q 042358 97 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLG--YETSYDVFVKAHGGGLSGQAQAITL 174 (193)
Q Consensus 97 ~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~--~~~kyDI~i~VkGGG~sGQA~AIRl 174 (193)
.++++||||+|+|+|||+||+|+|+|||+|+++|| ++.++++|++||.+++ +.++|||+|+|+|||++|||+||||
T Consensus 4 ~~~~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y~--~~~~r~~i~~Pl~~~~~~~~~~~di~i~V~GGG~sgQa~Air~ 81 (134)
T PRK00474 4 VVITSGKRKTAIARATIREGKGRVRINGVPLELIE--PELARLKIMEPLILAGEDLRSKVDIDVNVEGGGIMGQADAART 81 (134)
T ss_pred eEEEEeeCCCeEEEEEEEcCceEEEECCEeHHHHC--CHHHHHHHHHHHHHhCccccCCccEEEEEEcCChhHHHHHHHH
Confidence 46899999999999999999999999999999886 6889999999999999 8999999999999999999999999
Q ss_pred HHHHHHHhh--CccCcCCCC
Q 042358 175 GVARALLKF--CTSVPGIME 192 (193)
Q Consensus 175 AIARALv~~--~p~~R~~Lk 192 (193)
||||||+.+ +|++|+.||
T Consensus 82 aIaraL~~~~~~~~~r~~lk 101 (134)
T PRK00474 82 AIARGLVEWTGDMELKDAFL 101 (134)
T ss_pred HHHHHHHHhccCHHHHHHHH
Confidence 999999999 889888775
No 7
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=100.00 E-value=1.2e-34 Score=228.79 Aligned_cols=91 Identities=45% Similarity=0.679 Sum_probs=88.5
Q ss_pred ceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHHHHHHH
Q 042358 102 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALL 181 (193)
Q Consensus 102 GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv 181 (193)
||||+|+|+|||+||+|+|.|||+|+++||+ ++.++++|++||.+++..++|||+|+|+|||.+|||+||||||||||+
T Consensus 1 GkRK~a~A~v~l~~G~G~i~INg~~l~~yf~-~~~~r~~il~Pl~~~~~~~~~di~~~V~GGG~~gQa~Air~aiaraL~ 79 (121)
T PF00380_consen 1 GKRKTAIARVWLKPGSGKIRINGKPLEEYFP-NPYLREKILEPLELTGTLGKFDIFANVKGGGISGQAGAIRLAIARALV 79 (121)
T ss_dssp EEETTEEEEEEEEESSSEEEETTSEHHHHSS-STTTGCCTTHHHHCTTTSTSEEEEEEEESSSHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEeCceEEEECCEEHHHhcC-cHhHHHHHHHHHHHhCcCCeeeEEEEEecCcEeeehHHHHHHHHHHHH
Confidence 8999999999999999999999999999996 889999999999999999999999999999999999999999999999
Q ss_pred hhCccCcCCCCC
Q 042358 182 KFCTSVPGIMES 193 (193)
Q Consensus 182 ~~~p~~R~~Lk~ 193 (193)
.++|++++.||+
T Consensus 80 ~~~~~~~~~Lk~ 91 (121)
T PF00380_consen 80 KFNPSLKPELKK 91 (121)
T ss_dssp HHHTTCHHHHCT
T ss_pred HHhHHHHHHHhh
Confidence 999999998874
No 8
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=100.00 E-value=1.6e-33 Score=229.22 Aligned_cols=94 Identities=22% Similarity=0.313 Sum_probs=87.0
Q ss_pred eEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCc--cCccceEEEEecCChhhHHHHHHH
Q 042358 97 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGY--ETSYDVFVKAHGGGLSGQAQAITL 174 (193)
Q Consensus 97 ~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~--~~kyDI~i~VkGGG~sGQA~AIRl 174 (193)
.++++||||+|+|+||+++|+|+|+|||+|+++||+ +.++++|++||.+++. .++|||+|+|+|||++|||+||||
T Consensus 10 ~v~~~GrRKtAiArv~l~~G~G~i~INg~~l~~y~~--~~~r~~i~~Pl~~~~~~~~~~~Di~i~V~GGG~sgQA~Air~ 87 (147)
T PTZ00086 10 QVQTFGKKKTAVAVALVTKGKGLIRVNGVPLDLINP--ETLRAKVFEPLLLVGKERFSRLDIRVRVRGGGQVAQAYAIRQ 87 (147)
T ss_pred ceEEeeecCCceEEEEEEcCCceEEECCcCHHHhCc--HHHHHHHHHHHHHhCcCccCceeEEEEEEcCCHHHHHHHHHH
Confidence 578999999999999999999999999999999996 6789999999999985 889999999999999999999999
Q ss_pred HHHHHHHhh-----CccCcCCCC
Q 042358 175 GVARALLKF-----CTSVPGIME 192 (193)
Q Consensus 175 AIARALv~~-----~p~~R~~Lk 192 (193)
||||||+.+ +++.|+.||
T Consensus 88 aIaRAL~~~~~~~~~~~~r~~Lk 110 (147)
T PTZ00086 88 AIAKGLVAYYQKYVDEATKAELK 110 (147)
T ss_pred HHHHHHHHHhcccCChHHHHHHH
Confidence 999999999 556666554
No 9
>PLN00210 40S ribosomal protein S16; Provisional
Probab=99.98 E-value=4.2e-33 Score=225.33 Aligned_cols=95 Identities=23% Similarity=0.299 Sum_probs=86.3
Q ss_pred eeEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCc--cCccceEEEEecCChhhHHHHHH
Q 042358 96 QTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGY--ETSYDVFVKAHGGGLSGQAQAIT 173 (193)
Q Consensus 96 ~~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~--~~kyDI~i~VkGGG~sGQA~AIR 173 (193)
..++++||||+|+|+||++||+|+|+|||+|+++||+ +.++++|++||.+++. .++|||+|+|+|||++|||+|||
T Consensus 3 ~~~~~~GrRKta~Arv~~~~G~G~i~INg~~~~~y~~--~~~r~~i~~Pl~~~~~~~~~~~Di~~~V~GGG~sgQa~Air 80 (141)
T PLN00210 3 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQP--EILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIR 80 (141)
T ss_pred cceeeeccCCCceEEEEEECCCceEEECCCcHHHHCC--HHHHHHHHHHHHHhCccccCceeEEEEEEcCCHhHHHHHHH
Confidence 3578999999999999999999999999999999975 7789999999999985 58999999999999999999999
Q ss_pred HHHHHHHHhhCc-----cCcCCCC
Q 042358 174 LGVARALLKFCT-----SVPGIME 192 (193)
Q Consensus 174 lAIARALv~~~p-----~~R~~Lk 192 (193)
|||||||+.+++ ++|+.||
T Consensus 81 ~aiaraL~~~~~~~~~~~~r~~Lk 104 (141)
T PLN00210 81 QSIAKALVAYYQKYVDEQSKKEIK 104 (141)
T ss_pred HHHHHHHHHhcccccChhHHHHHH
Confidence 999999999966 5555554
No 10
>KOG1753 consensus 40S ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.2e-19 Score=142.97 Aligned_cols=91 Identities=26% Similarity=0.349 Sum_probs=82.9
Q ss_pred cceeEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCc--cCccceEEEEecCChhhHHHH
Q 042358 94 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGY--ETSYDVFVKAHGGGLSGQAQA 171 (193)
Q Consensus 94 ~~~~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~--~~kyDI~i~VkGGG~sGQA~A 171 (193)
..++++.+||+|+|+|.+.++.|+|-|.|||+|++.+ + +..++.+++||+.+++. ....||.|.|+|||.++|.+|
T Consensus 5 ~~qSvq~fG~KK~AtAva~ck~G~glikvNg~ple~i-e-~~~L~~Kl~Epvlllgk~rfa~vdi~v~~~ggghvsqiya 82 (145)
T KOG1753|consen 5 PLQSVQVFGRKKTATAVAHCKHGSGLIKVNGRPLELI-E-PEILRYKLLEPVLLLGKERFAGVDIRVRVKGGGHVSQIYA 82 (145)
T ss_pred cccceeeeccccceEEEEEeecCceEEEECCcchHhc-c-HHHHHHHHhhhHhhhhhhhhCCCceEEEEecCchHHHHHH
Confidence 3567889999999999999999999999999999965 3 68889999999999984 568999999999999999999
Q ss_pred HHHHHHHHHHhhCcc
Q 042358 172 ITLGVARALLKFCTS 186 (193)
Q Consensus 172 IRlAIARALv~~~p~ 186 (193)
||++||+||++++..
T Consensus 83 irqa~~kalvayyqk 97 (145)
T KOG1753|consen 83 IRQAIAKALVAYYQK 97 (145)
T ss_pred HHHHhhHHHHHHHHH
Confidence 999999999999763
No 11
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=0.061 Score=53.98 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=56.7
Q ss_pred EceecceEEEEEE---EccceEEEEcCccccccccCCHHHHHHHH----HHHH---------------------------
Q 042358 101 TGRRKCAIARVVL---QEGTGKFIINYRDAKEYLQGNPLWLQYIK----VPLV--------------------------- 146 (193)
Q Consensus 101 ~GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~~~~~~r~~Il----~PL~--------------------------- 146 (193)
.|.=|+++|.--+ .|-+|+|.++|+|+.+|= ...+|++|- ||..
T Consensus 503 SGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~--~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ 580 (716)
T KOG0058|consen 503 SGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN--HKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKM 580 (716)
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC--HHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHH
Confidence 4555888887633 488999999999999983 345555431 2321
Q ss_pred ------HhCccCccceEEEEecCChh-hHHHHHHHHHHHHHHhhCc
Q 042358 147 ------TLGYETSYDVFVKAHGGGLS-GQAQAITLGVARALLKFCT 185 (193)
Q Consensus 147 ------lt~~~~kyDI~i~VkGGG~s-GQA~AIRlAIARALv~~~p 185 (193)
+.+..++||-.|--||-=+| ||-| |.||||||++ ||
T Consensus 581 ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ--RIAIARALlr-~P 623 (716)
T KOG0058|consen 581 ANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ--RIAIARALLR-NP 623 (716)
T ss_pred hChHHHHHhCccccccccCCccccccchHHH--HHHHHHHHhc-CC
Confidence 44567889999988885554 3665 7799999987 44
No 12
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.57 E-value=0.9 Score=42.32 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=49.9
Q ss_pred EceecceEEEEEE---EccceEEEEcCcccccccc-----------CC-----HHHH------------HHHHHHHHHhC
Q 042358 101 TGRRKCAIARVVL---QEGTGKFIINYRDAKEYLQ-----------GN-----PLWL------------QYIKVPLVTLG 149 (193)
Q Consensus 101 ~GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~-----------~~-----~~~r------------~~Il~PL~lt~ 149 (193)
.|-=|+..++.-+ .|.+|+|.|||+++.++ . .+ ...+ +.+.+-+...+
T Consensus 370 SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~ 448 (529)
T TIGR02868 370 SGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVG 448 (529)
T ss_pred CCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcC
Confidence 3444777777633 57889999999887754 2 01 1112 22333344333
Q ss_pred -------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 -------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 -------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+.+.||-.+--+|..+||- |-=|+||||||++
T Consensus 449 l~~~i~~lp~GldT~ige~G~~LSGG-QrQRiaiARall~ 487 (529)
T TIGR02868 449 LADWLRSLPDGLDTVLGEGGARLSGG-ERQRLALARALLA 487 (529)
T ss_pred CHHHHHhCcccccchhccccCcCCHH-HHHHHHHHHHHhc
Confidence 3457888877667667642 3349999999987
No 13
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=81.79 E-value=1.7 Score=46.74 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=52.9
Q ss_pred EEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHH------------------------------HHHHHHHHh
Q 042358 99 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQ------------------------------YIKVPLVTL 148 (193)
Q Consensus 99 ~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~------------------------------~Il~PL~lt 148 (193)
+..+.++.+--.-...|-+|+|+|||+++.+|=. ..+|+ .|.+-+...
T Consensus 1258 ~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~--~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A 1335 (1466)
T PTZ00265 1258 FSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNL--KDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335 (1466)
T ss_pred cccccccccccccccCCCCCeEEECCEEHHhCCH--HHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 3455566655555666789999999999876521 12221 223333332
Q ss_pred C-------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 149 G-------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 149 ~-------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+ +.++||-.|--+|..+|| =|.=|+||||||++
T Consensus 1336 ~l~~fI~~LP~GydT~VGe~G~~LSG-GQkQRIaIARALlr 1375 (1466)
T PTZ00265 1336 AIDEFIESLPNKYDTNVGPYGKSLSG-GQKQRIAIARALLR 1375 (1466)
T ss_pred CCHHHHHhCccccCCccCCCCCcCCH-HHHHHHHHHHHHhc
Confidence 2 456789888877777775 35669999999987
No 14
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=79.63 E-value=0.18 Score=45.08 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=20.5
Q ss_pred ceecceEEEE---EEEccceEEEEcCcccc
Q 042358 102 GRRKCAIARV---VLQEGTGKFIINYRDAK 128 (193)
Q Consensus 102 GRRKtAiArV---~L~pGsGkI~INgkpl~ 128 (193)
|-=|+..+|+ +..|-.|.|.++|+++.
T Consensus 43 GsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 43 GSGKSTLARLLAGLEKPSSGSILLDGKPLA 72 (252)
T ss_pred CCCHHHHHHHHhcccCCCCceEEECCcccC
Confidence 3348888887 55788999999996443
No 15
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=78.42 E-value=3.1 Score=39.46 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=50.4
Q ss_pred EceecceEEEE---EEEccceEEEEcCcccccccc-----------CC-----HHHH-----------HHHHHHHHHhC-
Q 042358 101 TGRRKCAIARV---VLQEGTGKFIINYRDAKEYLQ-----------GN-----PLWL-----------QYIKVPLVTLG- 149 (193)
Q Consensus 101 ~GRRKtAiArV---~L~pGsGkI~INgkpl~eYF~-----------~~-----~~~r-----------~~Il~PL~lt~- 149 (193)
.|-=|++..+. ...|.+|+|.+||+++.++-. .+ ...+ +.+.+-+...+
T Consensus 376 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl 455 (592)
T PRK10790 376 TGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQL 455 (592)
T ss_pred CCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCc
Confidence 44557777765 335778999999998876421 01 1111 22333333333
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+.+.||-.+.-.|..+|| -+.=|++|||||++
T Consensus 456 ~~~i~~lp~Gldt~i~e~g~~LSG-GqrQRialARaLl~ 493 (592)
T PRK10790 456 AELARSLPDGLYTPLGEQGNNLSV-GQKQLLALARVLVQ 493 (592)
T ss_pred HHHHHhccccccccccCCCCCCCH-HHHHHHHHHHHHHh
Confidence 345688887766666765 34569999999997
No 16
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=77.92 E-value=3.1 Score=36.81 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=39.6
Q ss_pred EEEccceEEEEcCcc----------ccccccCCHH-----------------------HHHHHHHHHHHhCccCccceEE
Q 042358 112 VLQEGTGKFIINYRD----------AKEYLQGNPL-----------------------WLQYIKVPLVTLGYETSYDVFV 158 (193)
Q Consensus 112 ~L~pGsGkI~INgkp----------l~eYF~~~~~-----------------------~r~~Il~PL~lt~~~~kyDI~i 158 (193)
+..|.+|+|.|||++ ....||.|.. .++++-..+.-+|+.+..|=--
T Consensus 48 F~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP 127 (231)
T COG3840 48 FETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP 127 (231)
T ss_pred ccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc
Confidence 567899999999974 4455653322 2334444444444444333222
Q ss_pred EEecCChhhHHHHHHHHHHHHHHhhCc
Q 042358 159 KAHGGGLSGQAQAITLGVARALLKFCT 185 (193)
Q Consensus 159 ~VkGGG~sGQA~AIRlAIARALv~~~p 185 (193)
..-.|| |- =|-|+||||+.-.|
T Consensus 128 ~~LSGG---qR--QRvALARclvR~~P 149 (231)
T COG3840 128 GELSGG---QR--QRVALARCLVREQP 149 (231)
T ss_pred cccCch---HH--HHHHHHHHHhccCC
Confidence 222233 33 47899999998765
No 17
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=77.92 E-value=4.4 Score=39.41 Aligned_cols=81 Identities=25% Similarity=0.293 Sum_probs=49.6
Q ss_pred EceecceEEEEEE---EccceEEEEcCcccccccc-----------CCH-----HHHHH------------HHHHHHHhC
Q 042358 101 TGRRKCAIARVVL---QEGTGKFIINYRDAKEYLQ-----------GNP-----LWLQY------------IKVPLVTLG 149 (193)
Q Consensus 101 ~GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~-----------~~~-----~~r~~------------Il~PL~lt~ 149 (193)
.|-=|++..+.-+ .|.+|+|.|||+++.++=. .++ ..++. +.+-+...+
T Consensus 514 sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~ 593 (710)
T TIGR03796 514 SGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAA 593 (710)
T ss_pred CCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhC
Confidence 3444777777633 5788999999998875411 011 11222 222233332
Q ss_pred -------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 -------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 -------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..+.||-.+.-.|..+||= |-=|.+|||||++
T Consensus 594 l~~~i~~lp~gl~t~i~e~G~~LSGG-QrQRiaLARall~ 632 (710)
T TIGR03796 594 IHDVITSRPGGYDAELAEGGANLSGG-QRQRLEIARALVR 632 (710)
T ss_pred CHHHHHhCcCcccceeccCCCCCCHH-HHHHHHHHHHHhh
Confidence 3456888777777777652 4568899999987
No 18
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=77.44 E-value=3 Score=39.38 Aligned_cols=77 Identities=26% Similarity=0.330 Sum_probs=47.8
Q ss_pred ecceEEEE--EE-EccceEEEEcCccccccccCCHHHHH------------------------------HHHHHHHHhC-
Q 042358 104 RKCAIARV--VL-QEGTGKFIINYRDAKEYLQGNPLWLQ------------------------------YIKVPLVTLG- 149 (193)
Q Consensus 104 RKtAiArV--~L-~pGsGkI~INgkpl~eYF~~~~~~r~------------------------------~Il~PL~lt~- 149 (193)
=|+.+++. .+ .|-+|+|.|||.++.++-. ..+|. +|.+-+...+
T Consensus 367 GKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~--~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~ 444 (567)
T COG1132 367 GKSTLIKLLLRLYDPTSGEILIDGIDIRDISL--DSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANA 444 (567)
T ss_pred CHHHHHHHHhccCCCCCCeEEECCEehhhcCH--HHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhCh
Confidence 37777775 23 3568999999999886643 22222 3333333332
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHhh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLKF 183 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~~ 183 (193)
+.+.||..+--+|..+| .=|--|++|||||++-
T Consensus 445 ~d~I~~lp~g~dt~vge~G~~LS-gGQrQrlaiARall~~ 483 (567)
T COG1132 445 HEFIANLPDGYDTIVGERGVNLS-GGQRQRLAIARALLRN 483 (567)
T ss_pred HHHHHhCcccccceecCCCccCC-HHHHHHHHHHHHHhcC
Confidence 23468888874444444 3456699999999874
No 19
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=77.31 E-value=3.5 Score=40.44 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=48.6
Q ss_pred EceecceEEEE---EEEccceEEEEcCcccccccc-----------C-----CHHHHH------------HHHHHHHHhC
Q 042358 101 TGRRKCAIARV---VLQEGTGKFIINYRDAKEYLQ-----------G-----NPLWLQ------------YIKVPLVTLG 149 (193)
Q Consensus 101 ~GRRKtAiArV---~L~pGsGkI~INgkpl~eYF~-----------~-----~~~~r~------------~Il~PL~lt~ 149 (193)
.|-=|++..+. ...|.+|+|.|||+|+.+|-. . +...++ .+.+-+...+
T Consensus 516 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~ 595 (711)
T TIGR00958 516 SGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAAN 595 (711)
T ss_pred CCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 44457877775 335788999999999876521 0 011121 2222333332
Q ss_pred -------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 -------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 -------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+.+.||..+--+|.-+|| =|.=|++|||||++
T Consensus 596 l~~~i~~lp~GldT~ige~G~~LSG-GQkQRlalARALl~ 634 (711)
T TIGR00958 596 AHDFIMEFPNGYDTEVGEKGSQLSG-GQKQRIAIARALVR 634 (711)
T ss_pred CHHHHHhCCCccCCcccCCCCcCCH-HHHHHHHHHHHHhc
Confidence 334678776655555553 24668999999987
No 20
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=77.26 E-value=4.2 Score=39.55 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=48.3
Q ss_pred ceecceEEEEEE---EccceEEEEcCcccccccc-----------CC-----HHHHH-------------HHHHHHHHhC
Q 042358 102 GRRKCAIARVVL---QEGTGKFIINYRDAKEYLQ-----------GN-----PLWLQ-------------YIKVPLVTLG 149 (193)
Q Consensus 102 GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~-----------~~-----~~~r~-------------~Il~PL~lt~ 149 (193)
|-=|++.++.-+ .|-+|+|+|||+++.++=+ .+ ...++ .+.+-+...+
T Consensus 510 GsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~ 589 (708)
T TIGR01193 510 GSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAE 589 (708)
T ss_pred CCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhC
Confidence 334888877633 5788999999998865311 00 01111 2222333332
Q ss_pred -------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 -------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 -------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
....||..+.-.|..+|| =+-=|++|||||++
T Consensus 590 l~~~i~~lp~gldt~i~e~G~~LSg-GQrQRialARall~ 628 (708)
T TIGR01193 590 IKDDIENMPLGYQTELSEEGSSISG-GQKQRIALARALLT 628 (708)
T ss_pred CHHHHHhcccccCcEecCCCCCCCH-HHHHHHHHHHHHhh
Confidence 234678877666666664 24458899999987
No 21
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=77.01 E-value=3.1 Score=41.07 Aligned_cols=77 Identities=30% Similarity=0.410 Sum_probs=49.2
Q ss_pred ecceEEEE---EEEccceEEEEcCccccccccCCHHHHHH------------------------------HHHHHHHhCc
Q 042358 104 RKCAIARV---VLQEGTGKFIINYRDAKEYLQGNPLWLQY------------------------------IKVPLVTLGY 150 (193)
Q Consensus 104 RKtAiArV---~L~pGsGkI~INgkpl~eYF~~~~~~r~~------------------------------Il~PL~lt~~ 150 (193)
=|++...+ .+.|..|+|+|||.++.+.= ...|+++ |.+-++-.++
T Consensus 359 GKSTLl~lL~G~~~~~~G~I~vng~~l~~l~--~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l 436 (559)
T COG4988 359 GKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS--PEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGL 436 (559)
T ss_pred CHHHHHHHHhCcCCCCCceEEECCccccccC--HHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcH
Confidence 35555555 33567899999999987653 2333333 2233332221
Q ss_pred ------cCccceEEEEecCChhhHHHHHHHHHHHHHHhh
Q 042358 151 ------ETSYDVFVKAHGGGLSGQAQAITLGVARALLKF 183 (193)
Q Consensus 151 ------~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~~ 183 (193)
.+.+|-.+--.|-|+||= +|-|+|+||||+.-
T Consensus 437 ~~~v~~p~GLdt~ige~G~~LSgG-Q~QRlaLARAll~~ 474 (559)
T COG4988 437 LEFVPKPDGLDTVIGEGGAGLSGG-QAQRLALARALLSP 474 (559)
T ss_pred HHhhcCCCcccchhccCCCCCCHH-HHHHHHHHHHhcCC
Confidence 246777787788888762 46799999999764
No 22
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=76.28 E-value=4.5 Score=39.24 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=48.8
Q ss_pred EceecceEEEEE---EEccceEEEEcCcccccccc-----------CCH-----HHH------------HHHHHHHHHhC
Q 042358 101 TGRRKCAIARVV---LQEGTGKFIINYRDAKEYLQ-----------GNP-----LWL------------QYIKVPLVTLG 149 (193)
Q Consensus 101 ~GRRKtAiArV~---L~pGsGkI~INgkpl~eYF~-----------~~~-----~~r------------~~Il~PL~lt~ 149 (193)
.|-=|++.++.- ..|-+|+|.|||+++.++=. .++ ..+ +.+.+-+...+
T Consensus 500 sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~ 579 (694)
T TIGR03375 500 IGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAG 579 (694)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcC
Confidence 344477776652 35778999999998875311 010 111 12222333332
Q ss_pred -------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 -------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 -------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+...||..+.-+|..+||= +-=|++|||||++
T Consensus 580 l~~~i~~lp~gl~T~i~e~G~~LSgG-QrQRlalARall~ 618 (694)
T TIGR03375 580 VTEFVRRHPDGLDMQIGERGRSLSGG-QRQAVALARALLR 618 (694)
T ss_pred hHHHHHhCcccccceecCCCCCCCHH-HHHHHHHHHHHhc
Confidence 3456888877677667652 4568999999986
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=75.51 E-value=4.5 Score=35.77 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 139 QYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 139 ~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..+.+-|..+++.+|-+..-..-.|| +-=|.|||||++.
T Consensus 116 ~rV~~~L~~VgL~~k~~~lP~~LSGG-----EQQRvaIARAiV~ 154 (223)
T COG2884 116 RRVSEVLDLVGLKHKARALPSQLSGG-----EQQRVAIARAIVN 154 (223)
T ss_pred HHHHHHHHHhccchhhhcCccccCch-----HHHHHHHHHHHcc
Confidence 34455555566666666555554454 3458999999986
No 24
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=75.47 E-value=5.2 Score=37.83 Aligned_cols=81 Identities=27% Similarity=0.297 Sum_probs=49.8
Q ss_pred EceecceEEEEEE--EccceEEEEcCcccccccc-----------CCH-----HHH------------HHHHHHHHHhC-
Q 042358 101 TGRRKCAIARVVL--QEGTGKFIINYRDAKEYLQ-----------GNP-----LWL------------QYIKVPLVTLG- 149 (193)
Q Consensus 101 ~GRRKtAiArV~L--~pGsGkI~INgkpl~eYF~-----------~~~-----~~r------------~~Il~PL~lt~- 149 (193)
.|-=|+..++.-+ .|-+|+|.+||+++.++=. .++ ..+ +.+.+-+...+
T Consensus 385 SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l 464 (588)
T PRK11174 385 SGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWV 464 (588)
T ss_pred CCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCH
Confidence 3444777766422 2778999999998865411 010 111 22333344333
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+.+.||-.+--+|..+||= |-=|++|||||++
T Consensus 465 ~~~i~~lp~G~dT~vge~G~~LSGG-QrQRialARAll~ 502 (588)
T PRK11174 465 SEFLPLLPQGLDTPIGDQAAGLSVG-QAQRLALARALLQ 502 (588)
T ss_pred HHHHHhcccccccccccCCCCCCHH-HHHHHHHHHHHhc
Confidence 3457888887777777742 3559999999987
No 25
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=75.07 E-value=4.4 Score=40.77 Aligned_cols=74 Identities=28% Similarity=0.372 Sum_probs=51.8
Q ss_pred cceEEEEEE---EccceEEEEcCccccccccCCHHHH------------------------------HHHHHHHHHhC--
Q 042358 105 KCAIARVVL---QEGTGKFIINYRDAKEYLQGNPLWL------------------------------QYIKVPLVTLG-- 149 (193)
Q Consensus 105 KtAiArV~L---~pGsGkI~INgkpl~eYF~~~~~~r------------------------------~~Il~PL~lt~-- 149 (193)
|+..++.-. .|-.|.|.+||.++.++=. ..+| +.|.+-..+.+
T Consensus 512 KSTL~KLL~gly~p~~G~I~~dg~dl~~i~~--~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~ 589 (709)
T COG2274 512 KSTLLKLLLGLYKPQQGRILLDGVDLNDIDL--ASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589 (709)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEeHHhcCH--HHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 777777532 5778999999999975521 2222 23444444443
Q ss_pred -----ccCccceEEEEecCChhh-HHHHHHHHHHHHHHh
Q 042358 150 -----YETSYDVFVKAHGGGLSG-QAQAITLGVARALLK 182 (193)
Q Consensus 150 -----~~~kyDI~i~VkGGG~sG-QA~AIRlAIARALv~ 182 (193)
+-.+||-.+--+|+++|| |-+ |++|||||+.
T Consensus 590 ~fI~~lP~gy~t~v~E~G~~LSGGQrQ--rlalARaLl~ 626 (709)
T COG2274 590 EFIENLPMGYDTPVGEGGANLSGGQRQ--RLALARALLS 626 (709)
T ss_pred HHHHhcccccccccccCCCCCCHHHHH--HHHHHHHhcc
Confidence 456899999999999985 665 7899999976
No 26
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=68.77 E-value=8.8 Score=38.94 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=31.6
Q ss_pred EEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHH-------hC----ccCccceEEEEecCChh
Q 042358 110 RVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVT-------LG----YETSYDVFVKAHGGGLS 166 (193)
Q Consensus 110 rV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~l-------t~----~~~kyDI~i~VkGGG~s 166 (193)
.+...||+|++.++|. +.+..+ +.+..-+.. .+ ..+++||++.|-||...
T Consensus 614 E~~~~~g~g~~~~tG~-lg~vmk------es~~~A~~~~~~~~~~~~~~~~~~~~~Di~i~v~~g~~~ 674 (784)
T PRK10787 614 ETACVPGKGKLTYTGS-LGEVMQ------ESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATP 674 (784)
T ss_pred EEEEecCCceEEEecC-cHHHHH------HHHHHHHHHHHHHHHHcCCCcccccCceEEEEecCCCCC
Confidence 3456799999999994 554443 222222221 22 34678999999988665
No 27
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=68.23 E-value=9.2 Score=37.10 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=48.2
Q ss_pred EceecceEEEEE---EEccceEEEEcCcccccccc-----------CC-----HHHHH-----------HHHHHHHHhC-
Q 042358 101 TGRRKCAIARVV---LQEGTGKFIINYRDAKEYLQ-----------GN-----PLWLQ-----------YIKVPLVTLG- 149 (193)
Q Consensus 101 ~GRRKtAiArV~---L~pGsGkI~INgkpl~eYF~-----------~~-----~~~r~-----------~Il~PL~lt~- 149 (193)
.|-=|++.++.- ..|-+|+|.|||+++.+|=+ .+ ...++ .+.+-+...+
T Consensus 488 sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l 567 (686)
T TIGR03797 488 SGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGL 567 (686)
T ss_pred CCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCc
Confidence 344477777753 35778999999999875411 00 11122 2333344433
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+..+||-.+--.|..+|| =+-=|.+|||||++
T Consensus 568 ~~~i~~lp~G~dt~ige~G~~LSG-GQrQRialARAll~ 605 (686)
T TIGR03797 568 AEDIRAMPMGMHTVISEGGGTLSG-GQRQRLLIARALVR 605 (686)
T ss_pred HHHHHhccccccccccCCCCCCCH-HHHHHHHHHHHHhc
Confidence 234677777666666653 23458899999986
No 28
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=67.53 E-value=8.4 Score=35.93 Aligned_cols=80 Identities=26% Similarity=0.358 Sum_probs=45.5
Q ss_pred ceecceEEEEE---EEccceEEEEcCccccccc------------cC----CHHHHH------------HHHHHHHHhC-
Q 042358 102 GRRKCAIARVV---LQEGTGKFIINYRDAKEYL------------QG----NPLWLQ------------YIKVPLVTLG- 149 (193)
Q Consensus 102 GRRKtAiArV~---L~pGsGkI~INgkpl~eYF------------~~----~~~~r~------------~Il~PL~lt~- 149 (193)
|-=|+...+.- ..|.+|+|.+||.++.++= |+ +...++ .+.+.+...+
T Consensus 358 GsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l 437 (529)
T TIGR02857 358 GAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGL 437 (529)
T ss_pred CCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCc
Confidence 34466666652 2477899999999876541 10 011122 2333333333
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..+.||..+.-.|.-+|| -+.=|++|||||++
T Consensus 438 ~~~i~~lp~Gldt~v~e~g~~LSg-Gq~qri~laRal~~ 475 (529)
T TIGR02857 438 DEFVAALPQGLDTLIGEGGAGLSG-GQAQRLALARAFLR 475 (529)
T ss_pred HHHHHhCcccccchhccccccCCH-HHHHHHHHHHHHhc
Confidence 234577665544444443 45679999999987
No 29
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=66.38 E-value=12 Score=36.52 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=47.4
Q ss_pred ceecceEEEEE---EEccceEEEEcCcccccccc-----------CCH-----HHHH------------HHHHHHHHhC-
Q 042358 102 GRRKCAIARVV---LQEGTGKFIINYRDAKEYLQ-----------GNP-----LWLQ------------YIKVPLVTLG- 149 (193)
Q Consensus 102 GRRKtAiArV~---L~pGsGkI~INgkpl~eYF~-----------~~~-----~~r~------------~Il~PL~lt~- 149 (193)
|-=|++.+++- ..|.+|+|.|||+++.+|=. .++ ..++ .+.+-+...+
T Consensus 493 GsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l 572 (694)
T TIGR01846 493 GSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGA 572 (694)
T ss_pred CCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcCh
Confidence 34477777653 25788999999998865311 010 1111 2222222222
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+.+.||..+.-.|..+|| =+-=|++|||||++
T Consensus 573 ~~~i~~lp~gl~t~i~~~g~~LSg-Gq~qri~lARall~ 610 (694)
T TIGR01846 573 HDFISELPQGYNTEVGEKGANLSG-GQRQRIAIARALVG 610 (694)
T ss_pred HHHHHhCcCccCcEecCCCCCCCH-HHHHHHHHHHHHHh
Confidence 334688877666666664 34468999999986
No 30
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.92 E-value=11 Score=40.40 Aligned_cols=66 Identities=29% Similarity=0.300 Sum_probs=44.2
Q ss_pred ccceEEEEcCccccccccCCHHHHH------------------------------HHHHHHHHh-------CccCccceE
Q 042358 115 EGTGKFIINYRDAKEYLQGNPLWLQ------------------------------YIKVPLVTL-------GYETSYDVF 157 (193)
Q Consensus 115 pGsGkI~INgkpl~eYF~~~~~~r~------------------------------~Il~PL~lt-------~~~~kyDI~ 157 (193)
|-.|+|.|+|+++.+|=- ..+|+ +|.+.++.. ++-+.||-.
T Consensus 1042 p~~G~V~IDg~dik~lnl--~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNL--KWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119 (1228)
T ss_pred CCCCeEEECCcccccCCH--HHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCc
Confidence 457999999999987721 22222 233333332 356789998
Q ss_pred EEEecCChhh-HHHHHHHHHHHHHHhhCc
Q 042358 158 VKAHGGGLSG-QAQAITLGVARALLKFCT 185 (193)
Q Consensus 158 i~VkGGG~sG-QA~AIRlAIARALv~~~p 185 (193)
+--+|.=+|| |.| |.||||||++ ||
T Consensus 1120 vGerG~QLSGGQKQ--RIAIARAilR-nP 1145 (1228)
T KOG0055|consen 1120 VGERGVQLSGGQKQ--RIAIARAILR-NP 1145 (1228)
T ss_pred cCcccCcCCchHHH--HHHHHHHHHc-CC
Confidence 8888876664 554 8999999997 54
No 31
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.21 E-value=8.8 Score=41.23 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=43.6
Q ss_pred EccceEEEEcCccccccccCCHHHHHHH----HHHHHHh---------------------------------CccCccce
Q 042358 114 QEGTGKFIINYRDAKEYLQGNPLWLQYI----KVPLVTL---------------------------------GYETSYDV 156 (193)
Q Consensus 114 ~pGsGkI~INgkpl~eYF~~~~~~r~~I----l~PL~lt---------------------------------~~~~kyDI 156 (193)
.|-+|+|.|+|.++.++ + .+.+|.+| .+|+.+. .+...||.
T Consensus 404 dP~~G~V~idG~di~~~-~-~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T 481 (1228)
T KOG0055|consen 404 DPTSGEVLIDGEDIRNL-N-LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481 (1228)
T ss_pred CCCCceEEEcCccchhc-c-hHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcc
Confidence 36689999999999876 3 45555543 2454322 23456777
Q ss_pred EEEEecCChhhHHHHHHHHHHHHHHhhCc
Q 042358 157 FVKAHGGGLSGQAQAITLGVARALLKFCT 185 (193)
Q Consensus 157 ~i~VkGGG~sGQA~AIRlAIARALv~~~p 185 (193)
.+--+|.=+|| =+--|.||||||++ ||
T Consensus 482 ~vge~g~qLSG-GQKQRIAIARalv~-~P 508 (1228)
T KOG0055|consen 482 LVGERGVQLSG-GQKQRIAIARALVR-NP 508 (1228)
T ss_pred cccCCCCCCCh-HHHHHHHHHHHHHh-CC
Confidence 77666644443 23459999999987 44
No 32
>PLN03130 ABC transporter C family member; Provisional
Probab=60.40 E-value=14 Score=40.39 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=48.5
Q ss_pred EceecceEEEEEE---EccceEEEEcCccccccccCCHHHH-----------------------------HHHHHHHHHh
Q 042358 101 TGRRKCAIARVVL---QEGTGKFIINYRDAKEYLQGNPLWL-----------------------------QYIKVPLVTL 148 (193)
Q Consensus 101 ~GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~~~~~~r-----------------------------~~Il~PL~lt 148 (193)
+|-=|++..++-+ .|.+|+|.|||+++.++= ...+| +.+.+-+...
T Consensus 1274 SGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~--l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a 1351 (1622)
T PLN03130 1274 TGAGKSSMLNALFRIVELERGRILIDGCDISKFG--LMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERA 1351 (1622)
T ss_pred CCCCHHHHHHHHhCcCCCCCceEEECCEecccCC--HHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHc
Confidence 3444777777632 477899999999886541 11111 2334444433
Q ss_pred C-------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 149 G-------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 149 ~-------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+ +.++||-.+.-+|..+|| =+-=|++|||||++
T Consensus 1352 ~l~~~I~~lp~GLdt~Vge~G~nLSg-GQrQrlaLARALLr 1391 (1622)
T PLN03130 1352 HLKDVIRRNSLGLDAEVSEAGENFSV-GQRQLLSLARALLR 1391 (1622)
T ss_pred CcHHHHHhCccccCccccCCCCCCCH-HHHHHHHHHHHHHc
Confidence 3 335788777555555553 34558899999997
No 33
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=60.38 E-value=14 Score=33.20 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=42.5
Q ss_pred cceEEEE--EE-EccceEEEEcCcccc-------------c------cccCCHHHHHHHHHHHHHh--------------
Q 042358 105 KCAIARV--VL-QEGTGKFIINYRDAK-------------E------YLQGNPLWLQYIKVPLVTL-------------- 148 (193)
Q Consensus 105 KtAiArV--~L-~pGsGkI~INgkpl~-------------e------YF~~~~~~r~~Il~PL~lt-------------- 148 (193)
|+..=|| .| .+.+|.|.|+|.++. . .|++-....+.++.|..+.
T Consensus 41 KSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~l 120 (240)
T COG1126 41 KSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120 (240)
T ss_pred HHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHH
Confidence 6655555 33 356899999996543 2 3442223333344455433
Q ss_pred ----CccCccceEEEEecCChhhHHHHHHHHHHHHHHhhCc
Q 042358 149 ----GYETSYDVFVKAHGGGLSGQAQAITLGVARALLKFCT 185 (193)
Q Consensus 149 ----~~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~~~p 185 (193)
|+.++.|-+-.--.|| |- =|-||||||+ ++|
T Consensus 121 L~~VGL~~ka~~yP~qLSGG---Qq--QRVAIARALa-M~P 155 (240)
T COG1126 121 LEKVGLADKADAYPAQLSGG---QQ--QRVAIARALA-MDP 155 (240)
T ss_pred HHHcCchhhhhhCccccCcH---HH--HHHHHHHHHc-CCC
Confidence 3455666655544554 33 3889999996 344
No 34
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=58.90 E-value=16 Score=34.54 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=47.4
Q ss_pred EceecceEEEE---EEEccceEEEEcCcccccccc-----------CC-----HHHHHHH-------------HHHHHHh
Q 042358 101 TGRRKCAIARV---VLQEGTGKFIINYRDAKEYLQ-----------GN-----PLWLQYI-------------KVPLVTL 148 (193)
Q Consensus 101 ~GRRKtAiArV---~L~pGsGkI~INgkpl~eYF~-----------~~-----~~~r~~I-------------l~PL~lt 148 (193)
.|-=|+..++. ...|-+|+|.+||+++.++-. .+ ...++.| .+.+...
T Consensus 378 sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~ 457 (582)
T PRK11176 378 SGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMA 457 (582)
T ss_pred CCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHh
Confidence 34448887776 335778999999998765321 01 1122222 2222322
Q ss_pred C-------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 149 G-------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 149 ~-------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+ +.+++|..+--.|--+|| =+.=|++|||||++
T Consensus 458 ~l~~~i~~lp~Gldt~ig~~g~~LSG-GqrQRi~LARall~ 497 (582)
T PRK11176 458 YAMDFINKMDNGLDTVIGENGVLLSG-GQRQRIAIARALLR 497 (582)
T ss_pred CcHHHHHhcccccCceeCCCCCcCCH-HHHHHHHHHHHHHh
Confidence 2 345577776655444444 44568899999998
No 35
>PLN03232 ABC transporter C family member; Provisional
Probab=57.17 E-value=16 Score=39.34 Aligned_cols=81 Identities=22% Similarity=0.211 Sum_probs=49.8
Q ss_pred EceecceEEEEEE---EccceEEEEcCcccccccc-----------CC-----HHH-----------HHHHHHHHHHhC-
Q 042358 101 TGRRKCAIARVVL---QEGTGKFIINYRDAKEYLQ-----------GN-----PLW-----------LQYIKVPLVTLG- 149 (193)
Q Consensus 101 ~GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~-----------~~-----~~~-----------r~~Il~PL~lt~- 149 (193)
+|-=|++.+.+-+ .|-+|+|.|||+++.++=. .+ ... .+.+.+-+...+
T Consensus 1271 SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l 1350 (1495)
T PLN03232 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHI 1350 (1495)
T ss_pred CCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCC
Confidence 3444777777633 5778999999999865411 00 011 123444454433
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..++||-.+.-+|..+|| =|-=|++|||||++
T Consensus 1351 ~~~I~~lp~GLdt~v~e~G~~LSg-GQrQrlaLARALLr 1388 (1495)
T PLN03232 1351 KDVIDRNPFGLDAEVSEGGENFSV-GQRQLLSLARALLR 1388 (1495)
T ss_pred HHHHHhCcCCCCceecCCCCCCCH-HHHHHHHHHHHHHh
Confidence 345788777766666664 23448899999987
No 36
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=57.05 E-value=10 Score=33.36 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCccC---ccceEEEEecCChhhHHHH-HHHHHHHHHHhh
Q 042358 139 QYIKVPLVTLGYET---SYDVFVKAHGGGLSGQAQA-ITLGVARALLKF 183 (193)
Q Consensus 139 ~~Il~PL~lt~~~~---kyDI~i~VkGGG~sGQA~A-IRlAIARALv~~ 183 (193)
..|..-|...+..+ .||+.|.++|||-..-=.+ =-..+||||+.+
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~ 106 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAAS 106 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhC
Confidence 34556666666443 7999999999996443333 245666776654
No 37
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=56.16 E-value=5.1 Score=36.18 Aligned_cols=75 Identities=24% Similarity=0.381 Sum_probs=49.9
Q ss_pred EceecceEEEEEE---EccceEEEEcCccccccccCCHHHHHHHHHHHHHhC----ccCccceEEEEecCChhhHHHHHH
Q 042358 101 TGRRKCAIARVVL---QEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLG----YETSYDVFVKAHGGGLSGQAQAIT 173 (193)
Q Consensus 101 ~GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~----~~~kyDI~i~VkGGG~sGQA~AIR 173 (193)
.|==|+..+|+.+ .|-+|+|+.+|+++..+- ....++++.+=|..++ ...+|+-.. .|| |-| |
T Consensus 48 SG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--~~~~~~~v~elL~~Vgl~~~~~~ryPhel--SGG----QrQ--R 117 (268)
T COG4608 48 SGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--KEERRERVLELLEKVGLPEEFLYRYPHEL--SGG----QRQ--R 117 (268)
T ss_pred CCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--hhHHHHHHHHHHHHhCCCHHHhhcCCccc--Cch----hhh--h
Confidence 3444888888643 468899999999987542 3445567877788776 344666543 343 443 8
Q ss_pred HHHHHHHHhhCcc
Q 042358 174 LGVARALLKFCTS 186 (193)
Q Consensus 174 lAIARALv~~~p~ 186 (193)
.+|||||.. +|+
T Consensus 118 i~IARALal-~P~ 129 (268)
T COG4608 118 IGIARALAL-NPK 129 (268)
T ss_pred HHHHHHHhh-CCc
Confidence 899999864 553
No 38
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=54.64 E-value=15 Score=29.40 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=38.5
Q ss_pred cceEEEE---EEEccceEEEEcCccccccccCCHHHHHHHHH---HHHHhCccCccceEEEEecCChhhHHHHHHHHHHH
Q 042358 105 KCAIARV---VLQEGTGKFIINYRDAKEYLQGNPLWLQYIKV---PLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVAR 178 (193)
Q Consensus 105 KtAiArV---~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~---PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAIAR 178 (193)
|++..++ .+.|-.|+|.+||+++..+-. ..++..+-. -+...++....|-.+ ..-+.-+.-|.+|||
T Consensus 38 KStLl~~i~G~~~~~~G~v~~~g~~~~~~~~--~~~~~~i~~~~q~l~~~gl~~~~~~~~-----~~LS~G~~qrl~lar 110 (180)
T cd03214 38 KSTLLKTLAGLLKPSSGEILLDGKDLASLSP--KELARKIAYVPQALELLGLAHLADRPF-----NELSGGERQRVLLAR 110 (180)
T ss_pred HHHHHHHHhCCCCCCCcEEEECCEECCcCCH--HHHHHHHhHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHH
Confidence 6666554 235678999999998864421 222222221 133334332222222 222333567899999
Q ss_pred HHHh
Q 042358 179 ALLK 182 (193)
Q Consensus 179 ALv~ 182 (193)
||+.
T Consensus 111 al~~ 114 (180)
T cd03214 111 ALAQ 114 (180)
T ss_pred HHhc
Confidence 9986
No 39
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=54.50 E-value=21 Score=33.71 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=20.5
Q ss_pred EceecceEEEE---EEEccceEEEEcCccccc
Q 042358 101 TGRRKCAIARV---VLQEGTGKFIINYRDAKE 129 (193)
Q Consensus 101 ~GRRKtAiArV---~L~pGsGkI~INgkpl~e 129 (193)
.|-=|+...++ ...|.+|+|.+||+++.+
T Consensus 353 sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 353 SGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred CCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 34447777765 335788999999988754
No 40
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=54.19 E-value=20 Score=33.70 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=22.6
Q ss_pred EceecceEEEE---EEEccceEEEEcCcccccc
Q 042358 101 TGRRKCAIARV---VLQEGTGKFIINYRDAKEY 130 (193)
Q Consensus 101 ~GRRKtAiArV---~L~pGsGkI~INgkpl~eY 130 (193)
.|-=|++.++. .+.|.+|+|.|||.++.++
T Consensus 375 sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 375 SGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407 (576)
T ss_pred CCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc
Confidence 45558888775 3467889999999887654
No 41
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=53.86 E-value=19 Score=38.94 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=48.3
Q ss_pred ceecceEEEEEE---EccceEEEEcCcccccccc-----------CCH-----HHH-----------HHHHHHHHHhC--
Q 042358 102 GRRKCAIARVVL---QEGTGKFIINYRDAKEYLQ-----------GNP-----LWL-----------QYIKVPLVTLG-- 149 (193)
Q Consensus 102 GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~-----------~~~-----~~r-----------~~Il~PL~lt~-- 149 (193)
|==|++....-+ .|-+|+|.|||+++.++=. .++ ..| +.|.+-+...+
T Consensus 1322 GsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~ 1401 (1522)
T TIGR00957 1322 GAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLK 1401 (1522)
T ss_pred CCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcH
Confidence 334777666522 4667999999999865421 000 111 23333444443
Q ss_pred -----ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 -----YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 -----~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..++||-.+.-.|..+|| =|-=|++|||||++
T Consensus 1402 ~~I~~lp~GLdt~v~e~G~~LSg-GQrQrl~LARALLr 1438 (1522)
T TIGR00957 1402 TFVSALPDKLDHECAEGGENLSV-GQRQLVCLARALLR 1438 (1522)
T ss_pred HHHhhCccCCCceecCCCCcCCH-HHHHHHHHHHHHHc
Confidence 235788887777766764 23448889999996
No 42
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=53.50 E-value=51 Score=26.67 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=41.6
Q ss_pred EEEEEEEccceEEE-----EcCccccccccCCHHHHH----HHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHHHH
Q 042358 108 IARVVLQEGTGKFI-----INYRDAKEYLQGNPLWLQ----YIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVAR 178 (193)
Q Consensus 108 iArV~L~pGsGkI~-----INgkpl~eYF~~~~~~r~----~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAIAR 178 (193)
.+++...-+.+.|. ||+|-++..+. -|.... .|..=+.-.=..|++||.|+++..+.....-.|=.++++
T Consensus 7 fgr~~~~~~~~~~~vEikSvN~R~Ldi~~r-lP~~l~~lE~~ir~~i~~~l~RGkV~v~i~~~~~~~~~~~~~in~~l~~ 85 (159)
T PF03755_consen 7 FGRAEAETDGGSISVEIKSVNHRFLDISIR-LPRELSSLEPEIRKLIRKKLSRGKVEVSIRVERSSESAVELRINEELAK 85 (159)
T ss_pred CceeEEecCCeEEEEEEEecccCceeeEEe-CCHHHHHHHHHHHHHHHHhcccceEEEEEEEEECcccCCCcccCHHHHH
Confidence 33444444445443 69998877765 333222 122222222268999999999988755555555555555
Q ss_pred HHHh
Q 042358 179 ALLK 182 (193)
Q Consensus 179 ALv~ 182 (193)
++.+
T Consensus 86 ~y~~ 89 (159)
T PF03755_consen 86 AYYE 89 (159)
T ss_pred HHHH
Confidence 5444
No 43
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=52.93 E-value=44 Score=33.65 Aligned_cols=91 Identities=10% Similarity=0.123 Sum_probs=46.3
Q ss_pred cCCCCccceeEEEEceec--ceEEE--EEEEccceEEEEcCccccccccCCHHHH--HHHHHHHHHhCc----cCccceE
Q 042358 88 RLPGGFAAQTIFGTGRRK--CAIAR--VVLQEGTGKFIINYRDAKEYLQGNPLWL--QYIKVPLVTLGY----ETSYDVF 157 (193)
Q Consensus 88 r~~~~~~~~~~~~~GRRK--tAiAr--V~L~pGsGkI~INgkpl~eYF~~~~~~r--~~Il~PL~lt~~----~~kyDI~ 157 (193)
+.+.....|.++|.+--= -.+-. |.+.+|.|++.+.|.+-+ -.+ ....+ ..+..-+.-.+. ..++||+
T Consensus 592 ~~~~~~~~G~v~gla~~~~~g~~~~iE~~~~~G~~~~~~tG~~~~-~~k-ES~~~a~~~v~~~~~~~~~~~~~~~~~di~ 669 (775)
T TIGR00763 592 RAYEVTPPGVVMGLAWTPMGGDTLFIETTKVAGKGSLELTGQLGD-VMK-ESAQIALTYVRSIAADLGISPNFFEKADIH 669 (775)
T ss_pred hhccCCCCeEEEEEEEeCCCcEEEEEEEEEeCCCceEEEeCCchH-HHH-HHHHHHHHHHHHHHHHcCCCccccCCeEEE
Confidence 333344556666543321 12222 344689999999997533 222 11111 113223333332 3678999
Q ss_pred EEEecCChhhHHH----HHHHHHHHHH
Q 042358 158 VKAHGGGLSGQAQ----AITLGVARAL 180 (193)
Q Consensus 158 i~VkGGG~sGQA~----AIRlAIARAL 180 (193)
|.+-+|.....-- ||..||.-++
T Consensus 670 v~~~~g~~~k~Gpsa~laia~al~sa~ 696 (775)
T TIGR00763 670 LHVPEGATPKDGPSAGITMATALLSLA 696 (775)
T ss_pred EEcCCcccCCCCCcchHHHHHHHHHHc
Confidence 9998886653322 4444444443
No 44
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=52.74 E-value=18 Score=34.42 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=46.8
Q ss_pred EceecceEEEEEE---EccceEEEEcCcccccccc-----------CCH-----HHHHH------------HHHHHHHhC
Q 042358 101 TGRRKCAIARVVL---QEGTGKFIINYRDAKEYLQ-----------GNP-----LWLQY------------IKVPLVTLG 149 (193)
Q Consensus 101 ~GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~-----------~~~-----~~r~~------------Il~PL~lt~ 149 (193)
.|-=|+..++.-+ .|-+|.|.|||+++.++-. .++ ..++. +..-+...+
T Consensus 370 sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~ 449 (588)
T PRK13657 370 TGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449 (588)
T ss_pred CCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 4455887777633 5778999999988765421 011 11221 111222222
Q ss_pred -------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 -------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 -------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..+.+|..+.-.|--+||= +-=|++|||||++
T Consensus 450 l~~~i~~lp~gldt~i~~~g~~LSgG-q~QRialARall~ 488 (588)
T PRK13657 450 AHDFIERKPDGYDTVVGERGRQLSGG-ERQRLAIARALLK 488 (588)
T ss_pred HHHHHHhCcccccchhcCCCCCCCHH-HHHHHHHHHHHhc
Confidence 3345777665544445542 5679999999987
No 45
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=51.77 E-value=25 Score=32.99 Aligned_cols=81 Identities=25% Similarity=0.350 Sum_probs=45.9
Q ss_pred EceecceEEEE---EEEccceEEEEcCcccccccc-----------CC-----HHHHHH-------------HHHHHHHh
Q 042358 101 TGRRKCAIARV---VLQEGTGKFIINYRDAKEYLQ-----------GN-----PLWLQY-------------IKVPLVTL 148 (193)
Q Consensus 101 ~GRRKtAiArV---~L~pGsGkI~INgkpl~eYF~-----------~~-----~~~r~~-------------Il~PL~lt 148 (193)
.|-=|+...+. ...|.+|+|.+||+++.++-. .+ ...++. +.+-+...
T Consensus 367 sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~ 446 (571)
T TIGR02203 367 SGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAA 446 (571)
T ss_pred CCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 34447777665 335778999999988764321 01 112222 22223332
Q ss_pred C-------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 149 G-------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 149 ~-------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+ +.+.+|..+.-.|-.+|| -|.=|++|||||++
T Consensus 447 ~l~~~i~~lp~gldt~i~~~g~~LSg-GqrQRiaLARall~ 486 (571)
T TIGR02203 447 YAQDFVDKLPLGLDTPIGENGVLLSG-GQRQRLAIARALLK 486 (571)
T ss_pred ChHHHHHhCcCcccceecCCCCcCCH-HHHHHHHHHHHHhc
Confidence 2 334577766655444443 34558999999987
No 46
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=48.92 E-value=24 Score=32.70 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=36.8
Q ss_pred EccceEEEEcCccccc----------cccCCH-----HHHHHHHHHHHHh------------------CccCccceEEEE
Q 042358 114 QEGTGKFIINYRDAKE----------YLQGNP-----LWLQYIKVPLVTL------------------GYETSYDVFVKA 160 (193)
Q Consensus 114 ~pGsGkI~INgkpl~e----------YF~~~~-----~~r~~Il~PL~lt------------------~~~~kyDI~i~V 160 (193)
.|-+|+|.|||++..+ .||+-. .-++.|-.||..- +...-.|=...-
T Consensus 54 ~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~ 133 (338)
T COG3839 54 EPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ 133 (338)
T ss_pred CCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCccc
Confidence 3568999999987765 444211 2234455566543 333333333333
Q ss_pred ecCChhhHHHHHHHHHHHHHHh
Q 042358 161 HGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 161 kGGG~sGQA~AIRlAIARALv~ 182 (193)
--||. . =|.||||||+.
T Consensus 134 LSGGQ---r--QRVAlaRAlVr 150 (338)
T COG3839 134 LSGGQ---R--QRVALARALVR 150 (338)
T ss_pred CChhh---H--HHHHHHHHHhc
Confidence 33442 2 48899999986
No 47
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=46.81 E-value=32 Score=32.43 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=17.9
Q ss_pred ccceEEEEecCChhhHHHHHHHH
Q 042358 153 SYDVFVKAHGGGLSGQAQAITLG 175 (193)
Q Consensus 153 kyDI~i~VkGGG~sGQA~AIRlA 175 (193)
+.+.++.|=|||+.|-+-|+.++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la 231 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAA 231 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHH
Confidence 44556677799999999888775
No 48
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=45.82 E-value=35 Score=32.58 Aligned_cols=81 Identities=23% Similarity=0.394 Sum_probs=45.7
Q ss_pred EceecceEEEEEE---EccceEEEEcCcccccccc-----------CCH-----HHHH------------HHHHHHHHhC
Q 042358 101 TGRRKCAIARVVL---QEGTGKFIINYRDAKEYLQ-----------GNP-----LWLQ------------YIKVPLVTLG 149 (193)
Q Consensus 101 ~GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~-----------~~~-----~~r~------------~Il~PL~lt~ 149 (193)
.|-=|+..+++-+ .|-+|+|.+||+++.++-. .++ ..++ .+.+-+...+
T Consensus 375 sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~ 454 (574)
T PRK11160 375 TGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVG 454 (574)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcC
Confidence 3444788777533 5788999999998765421 011 0111 1222222222
Q ss_pred c------cCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 Y------ETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ~------~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
. .+.||-.+--+|..+|| -+.-|++|||||++
T Consensus 455 l~~~i~~p~GldT~vge~g~~LSg-GqrqRialARall~ 492 (574)
T PRK11160 455 LEKLLEDDKGLNAWLGEGGRQLSG-GEQRRLGIARALLH 492 (574)
T ss_pred CHHHHcCccccCchhcCCCCCCCH-HHHHHHHHHHHHhc
Confidence 2 23466555444444543 45779999999987
No 49
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=45.51 E-value=22 Score=32.98 Aligned_cols=45 Identities=27% Similarity=0.214 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCccCccceEEEEecCChhhHHHH-HHHHHHHHHHhh
Q 042358 138 LQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQA-ITLGVARALLKF 183 (193)
Q Consensus 138 r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~A-IRlAIARALv~~ 183 (193)
-..|..-|...+..+ ||+.|.++|||-..==-+ =-..+|||+..+
T Consensus 178 ~~~i~~al~~~~~~~-~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~ 223 (438)
T PRK00286 178 AASIVAAIERANARG-EDVLIVARGGGSLEDLWAFNDEAVARAIAAS 223 (438)
T ss_pred HHHHHHHHHHhcCCC-CCEEEEecCCCCHHHhhccCcHHHHHHHHcC
Confidence 345666677666655 999999999993221101 123455555543
No 50
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=43.44 E-value=24 Score=33.80 Aligned_cols=31 Identities=42% Similarity=0.687 Sum_probs=22.2
Q ss_pred cCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 151 ETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 151 ~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
.+.+|-.+.-+|..+|| =+-=|++|||||+.
T Consensus 458 ~~g~~t~~~~~~~~LSg-Gq~qrl~lARall~ 488 (585)
T TIGR01192 458 SNGYDTLVGERGNRLSG-GERQRLAIARAILK 488 (585)
T ss_pred cccccchhcCCCCCCCH-HHHHHHHHHHHHhc
Confidence 34567666666767774 35568999999987
No 51
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=42.47 E-value=21 Score=32.77 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=25.8
Q ss_pred cCccceEEEEecCChhhHHHHHHHHHHHH
Q 042358 151 ETSYDVFVKAHGGGLSGQAQAITLGVARA 179 (193)
Q Consensus 151 ~~kyDI~i~VkGGG~sGQA~AIRlAIARA 179 (193)
..+|-+.+.|.+=|++||.+|.+||-+-.
T Consensus 272 t~~ftlRC~~Cq~glvGq~ea~eHA~~TG 300 (307)
T KOG3288|consen 272 TAKFTLRCMVCQMGLVGQKEAAEHAKATG 300 (307)
T ss_pred ccceEEEeeecccceeeHHHHHHHHHhcC
Confidence 45889999999999999999999998754
No 52
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=41.41 E-value=40 Score=31.66 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=24.2
Q ss_pred CccceeEEEEceecceEEEE--EE-EccceEEEEcCcccccc
Q 042358 92 GFAAQTIFGTGRRKCAIARV--VL-QEGTGKFIINYRDAKEY 130 (193)
Q Consensus 92 ~~~~~~~~~~GRRKtAiArV--~L-~pGsGkI~INgkpl~eY 130 (193)
++-++.+=..|==|+.--|+ .| .|.+|+|.|||+++..+
T Consensus 32 GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l 73 (339)
T COG1135 32 GEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTAL 73 (339)
T ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccC
Confidence 33344333345557776665 33 47899999999766543
No 53
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=40.61 E-value=28 Score=32.76 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCccCccceEEEEecCChhhHHHHH-HHHHHHHHHh
Q 042358 138 LQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAI-TLGVARALLK 182 (193)
Q Consensus 138 r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AI-RlAIARALv~ 182 (193)
-..|..-|...+..+.+|+.|.++|||-..==-+- -..+|||+..
T Consensus 172 ~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~ 217 (432)
T TIGR00237 172 VQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFL 217 (432)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHc
Confidence 34566677766766679999999999954322111 2345555544
No 54
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=40.34 E-value=48 Score=31.60 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=45.6
Q ss_pred ceecceEEEEE---EEccceEEEEcCccccccc-----------cCC-----HHHHHHH------------HHHHHHhC-
Q 042358 102 GRRKCAIARVV---LQEGTGKFIINYRDAKEYL-----------QGN-----PLWLQYI------------KVPLVTLG- 149 (193)
Q Consensus 102 GRRKtAiArV~---L~pGsGkI~INgkpl~eYF-----------~~~-----~~~r~~I------------l~PL~lt~- 149 (193)
|-=|+...+.- ..|-+|+|.+||+++.++- +.+ ...++.+ .+-+...+
T Consensus 351 GsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l 430 (569)
T PRK10789 351 GSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASV 430 (569)
T ss_pred CCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 34477766642 3577899999999875431 000 1112221 12222222
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..+.+|-.+.-+|..+|| =+.-|++|||||+.
T Consensus 431 ~~~i~~lp~gl~t~~~~~g~~LSg-Gq~qRi~lARall~ 468 (569)
T PRK10789 431 HDDILRLPQGYDTEVGERGVMLSG-GQKQRISIARALLL 468 (569)
T ss_pred HHHHHhCcCcccceecCCCCcCCH-HHHHHHHHHHHHhc
Confidence 234567666666555654 35679999999987
No 55
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=38.09 E-value=69 Score=32.11 Aligned_cols=70 Identities=24% Similarity=0.335 Sum_probs=47.6
Q ss_pred EEEEccceEEEEcCcccccc-ccCCHHHHHHHHHHHHHhCc-cCccceEEEEec-----CChhhHHHHHHHHHHHHHHhh
Q 042358 111 VVLQEGTGKFIINYRDAKEY-LQGNPLWLQYIKVPLVTLGY-ETSYDVFVKAHG-----GGLSGQAQAITLGVARALLKF 183 (193)
Q Consensus 111 V~L~pGsGkI~INgkpl~eY-F~~~~~~r~~Il~PL~lt~~-~~kyDI~i~VkG-----GG~sGQA~AIRlAIARALv~~ 183 (193)
|.+.||+|.+.|-+-|+++. ++ ...+-....-+.++|. ..+||+++.|+- ||+|+- +++-.|+=-++..+
T Consensus 56 vtv~pG~G~v~v~t~P~t~~d~~--~SArvAa~~A~~~~Gvd~ssyd~~i~v~a~~pVVGgPSag-g~mtva~~~~~~~~ 132 (579)
T COG1750 56 VTVTPGDGRVYVATFPYTQIDMQ--GSARVAAGVALRLAGVDMSSYDVYIAVEADSPVVGGPSAG-GYMTVAIYAALMGW 132 (579)
T ss_pred eeecCCCceEEeecCCCchhccc--hhhHHHHHHHHHhhCCCccceeEEEEEecCCCeecCcccc-hHhHHHHHHHHhCC
Confidence 45589999999999999877 65 2344455567778874 569999999975 444442 34555555555443
No 56
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=37.15 E-value=99 Score=24.42 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=52.0
Q ss_pred EEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhC-ccCccceEEEEecCChhhHHHHHHHHHHHHHHhhC
Q 042358 111 VVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLG-YETSYDVFVKAHGGGLSGQAQAITLGVARALLKFC 184 (193)
Q Consensus 111 V~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~-~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~~~ 184 (193)
|.+.+|--.+.|-|.+-... ...++.|..-|.-.+ .....||+|++.+||+-=+-.+.=+|||=||+.-.
T Consensus 3 v~~~~Glp~~~ivGl~~~av----~esr~Rv~~al~~~g~~~p~~~i~VNlap~~l~k~g~~~DLaIA~ailsa~ 73 (121)
T PF13541_consen 3 VDISRGLPSFNIVGLPDTAV----KESRERVRSALKNSGFPFPNQDITVNLAPADLKKEGPAFDLAIAIAILSAF 73 (121)
T ss_pred EEEcCCCCceEEecCchHHH----HHHHHHHHHHHHhcCCCCCcceeeeEEEeCCEEEeeeeehHHHHHHHHHhC
Confidence 44556655688888875533 224677777777777 35678999999999998888888888988888654
No 57
>PF08346 AntA: AntA/AntB antirepressor; InterPro: IPR013557 In Escherichia coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the Bacteriophage 933W.
Probab=36.42 E-value=13 Score=27.16 Aligned_cols=62 Identities=26% Similarity=0.449 Sum_probs=38.7
Q ss_pred EcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEe------cCChhhHHHHHHHHHHHHHHhh
Q 042358 122 INYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAH------GGGLSGQAQAITLGVARALLKF 183 (193)
Q Consensus 122 INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~Vk------GGG~sGQA~AIRlAIARALv~~ 183 (193)
||++++.+++.-...+-.=|..=+.--+...+.|+.+... +||..-+-+.+.+-+||-|+=+
T Consensus 1 V~AR~Lh~~L~v~~~Fs~Wik~ri~~y~f~e~~Df~~~~~~~~~~~~ggr~~~dY~LTLdmAKelaMv 68 (71)
T PF08346_consen 1 VSARDLHEFLEVKKRFSTWIKRRIEEYGFVENVDFIVVEQNRKSNGGGGRPSKDYHLTLDMAKELAMV 68 (71)
T ss_pred CcHHHHHHHHcCCCcHHHHHHHHhhhcCcccCCCceEeecccccCCCCCeeEEeEEEeHHHHHHHHHH
Confidence 5777777766532222222332344455667788777653 5666677888899999988754
No 58
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=36.05 E-value=70 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=19.7
Q ss_pred ceecceEEEEE---EEccceEEEEcCccccc
Q 042358 102 GRRKCAIARVV---LQEGTGKFIINYRDAKE 129 (193)
Q Consensus 102 GRRKtAiArV~---L~pGsGkI~INgkpl~e 129 (193)
|-=|+...+.- ..|-+|+|.+||+++.+
T Consensus 378 GsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 378 GCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408 (555)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 33366666653 35778999999998865
No 59
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=35.84 E-value=62 Score=30.54 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=19.3
Q ss_pred CccceEEEEecCChhhHHHHHHHHH
Q 042358 152 TSYDVFVKAHGGGLSGQAQAITLGV 176 (193)
Q Consensus 152 ~kyDI~i~VkGGG~sGQA~AIRlAI 176 (193)
.+.+.++.|=|||+.|-+-|+.++-
T Consensus 209 ~~~~~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 209 QLDPYDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHH
Confidence 3556667778999999998887654
No 60
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=34.67 E-value=38 Score=26.88 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=17.3
Q ss_pred cceEEEE---EEEccceEEEEcCcccccc
Q 042358 105 KCAIARV---VLQEGTGKFIINYRDAKEY 130 (193)
Q Consensus 105 KtAiArV---~L~pGsGkI~INgkpl~eY 130 (193)
|++..++ .+.|.+|+|.+||+++..+
T Consensus 41 KStLl~~l~G~~~~~~G~i~~~g~~~~~~ 69 (178)
T cd03247 41 KSTLLQLLTGDLKPQQGEITLDGVPVSDL 69 (178)
T ss_pred HHHHHHHHhccCCCCCCEEEECCEEHHHH
Confidence 5555554 2246789999999877543
No 61
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=33.85 E-value=62 Score=35.16 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=46.1
Q ss_pred ceecceEEEE--EEEccceEEEEcCcccccccc-----------CCH-----HHHH-----------HHHHHHHHhC---
Q 042358 102 GRRKCAIARV--VLQEGTGKFIINYRDAKEYLQ-----------GNP-----LWLQ-----------YIKVPLVTLG--- 149 (193)
Q Consensus 102 GRRKtAiArV--~L~pGsGkI~INgkpl~eYF~-----------~~~-----~~r~-----------~Il~PL~lt~--- 149 (193)
|-=|++...+ .+.+-+|+|.|||+++.++=. .++ ..|+ .+..-|..++
T Consensus 1255 GsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~ 1334 (1490)
T TIGR01271 1255 GSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKS 1334 (1490)
T ss_pred CCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHH
Confidence 3346665554 333457999999999865411 000 1122 2333344333
Q ss_pred ----ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 ----YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ----~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..+.+|..+.-.|..+|| =+-=|++|||||++
T Consensus 1335 ~i~~lp~GLdt~v~e~G~nLSg-GQrQrL~LARALLr 1370 (1490)
T TIGR01271 1335 VIEQFPDKLDFVLVDGGYVLSN-GHKQLMCLARSILS 1370 (1490)
T ss_pred HHHhCccccccccccCCCcCCH-HHHHHHHHHHHHhC
Confidence 235678877765555653 34558899999987
No 62
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=33.14 E-value=44 Score=34.00 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=36.9
Q ss_pred EEEEEEccceEEEEcCccccccccCCHH----HHHHHHHHHHHhCccCccceEEEEecCChhhH---HH-HHHHHHHHHH
Q 042358 109 ARVVLQEGTGKFIINYRDAKEYLQGNPL----WLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQ---AQ-AITLGVARAL 180 (193)
Q Consensus 109 ArV~L~pGsGkI~INgkpl~eYF~~~~~----~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQ---A~-AIRlAIARAL 180 (193)
-.+...+|+|++.++|..+.+-++.... +...-..-+.+.....++||++-+--|...+- |+ |+..||+=|+
T Consensus 514 IE~~~~~G~Gkl~lTG~~lg~vmKESa~~A~sy~ks~a~~l~~~~~~~~~DiHIHvpega~pkdGpSAGia~~~AL~Sal 593 (675)
T TIGR02653 514 FEVQVSAGSGKHSVSGLGSNTTAKESIRVAFDYFKGNLVRISASAKFSEHDYHLHVVDLHNTGPSTEASLAALIALCSAL 593 (675)
T ss_pred EEEEEeCCCCceeeccCCchHHHHHHHHHHHHHHHHhHHhcCCCcccCcceEEEECCCCCCCCCCchhHHHHHHHHHHHH
Confidence 4566789999999999544433321000 00000111112224678999999865444333 22 3444444444
No 63
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=31.65 E-value=21 Score=35.61 Aligned_cols=117 Identities=26% Similarity=0.270 Sum_probs=69.9
Q ss_pred ceEEeeeccCCcchhhhhhhhhhhccCCCCccceeEEEEceecceEEEEE---EEccceEEEEcCcccccccc-------
Q 042358 63 KLVVSATEAAPAELETTDLKKYVKSRLPGGFAAQTIFGTGRRKCAIARVV---LQEGTGKFIINYRDAKEYLQ------- 132 (193)
Q Consensus 63 ~~~~~~~~~~~~~~e~~~l~~~v~~r~~~~~~~~~~~~~GRRKtAiArV~---L~pGsGkI~INgkpl~eYF~------- 132 (193)
.|.+..-...|.+.++..++..-= +++.+...+.+=-.|-=|++.||.- ..|.+|.+.++|-++++|=+
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF-~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISF-ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred eeeEeeeeecCCCCCCcceeccee-EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 355544444555555666655322 2333444444433445589998852 36789999999998875421
Q ss_pred ----CC-----------------HHHHHHHHHHHHH-------hCccCccceEEEEecCChhh-HHHHHHHHHHHHHHh
Q 042358 133 ----GN-----------------PLWLQYIKVPLVT-------LGYETSYDVFVKAHGGGLSG-QAQAITLGVARALLK 182 (193)
Q Consensus 133 ----~~-----------------~~~r~~Il~PL~l-------t~~~~kyDI~i~VkGGG~sG-QA~AIRlAIARALv~ 182 (193)
.+ +..-++|.+.=.+ ..+.+.||-.|--.|-++|| |-| |.|+||||..
T Consensus 413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ--RIaLARAlYG 489 (580)
T COG4618 413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ--RIALARALYG 489 (580)
T ss_pred CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH--HHHHHHHHcC
Confidence 00 0011234443332 33678899999888877774 555 7899999853
No 64
>PTZ00367 squalene epoxidase; Provisional
Probab=31.51 E-value=64 Score=31.54 Aligned_cols=39 Identities=31% Similarity=0.284 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHH
Q 042358 137 WLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLG 175 (193)
Q Consensus 137 ~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlA 175 (193)
..++++.=+.......+.+.+|.|-|||+.|-+-|+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~dViIVGaGiaGlalA~aLa 53 (567)
T PTZ00367 15 LLNRILSRLRFKPARTNYDYDVIIVGGSIAGPVLAKALS 53 (567)
T ss_pred HHHHHHHHHccCccccccCccEEEECCCHHHHHHHHHHH
Confidence 344555444444444456677788899999999886654
No 65
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.78 E-value=1.2e+02 Score=27.43 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=43.3
Q ss_pred cceEEE---EEEEccceEEEEcCcccc-------ccccCCHH--HH---------------------HHHHHHHHHhCcc
Q 042358 105 KCAIAR---VVLQEGTGKFIINYRDAK-------EYLQGNPL--WL---------------------QYIKVPLVTLGYE 151 (193)
Q Consensus 105 KtAiAr---V~L~pGsGkI~INgkpl~-------eYF~~~~~--~r---------------------~~Il~PL~lt~~~ 151 (193)
||..=+ -.+.|..|.|.+||++++ ..||++.. |+ ....+=|.+.++.
T Consensus 44 KTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~ 123 (259)
T COG4525 44 KTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE 123 (259)
T ss_pred HHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc
Confidence 665433 366788899999999653 45663221 22 2233444555554
Q ss_pred CccceEEEEecCChhhHHHHHHHHHHHHHHhhCcc
Q 042358 152 TSYDVFVKAHGGGLSGQAQAITLGVARALLKFCTS 186 (193)
Q Consensus 152 ~kyDI~i~VkGGG~sGQA~AIRlAIARALv~~~p~ 186 (193)
+--+=.|.--.||+- -|.||||||.. +|.
T Consensus 124 ~~~~~~i~qLSGGmr-----QRvGiARALa~-eP~ 152 (259)
T COG4525 124 GAEHKYIWQLSGGMR-----QRVGIARALAV-EPQ 152 (259)
T ss_pred cccccceEeecchHH-----HHHHHHHHhhc-Ccc
Confidence 433333444455532 37899999964 554
No 66
>PF05362 Lon_C: Lon protease (S16) C-terminal proteolytic domain; InterPro: IPR008269 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the C-terminal proteolytic domain of the archael, bacterial and eukaryotic Lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (Lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1Z0E_E 1Z0G_E 1Z0T_F 1Z0C_A 1Z0V_A 1Z0B_A 1Z0W_A 2KJP_A 2X36_F 3K1J_B ....
Probab=30.40 E-value=76 Score=27.15 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.1
Q ss_pred EEEEEccceEEEEcCc
Q 042358 110 RVVLQEGTGKFIINYR 125 (193)
Q Consensus 110 rV~L~pGsGkI~INgk 125 (193)
.+.+.+|+|++.+.|.
T Consensus 46 E~~~~~G~G~l~~tG~ 61 (204)
T PF05362_consen 46 EAQVIPGKGKLIITGN 61 (204)
T ss_dssp EEEEEESSSEEEEESS
T ss_pred EEeeccCcceeEeecc
Confidence 3456789999999996
No 67
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=41 Score=26.27 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=23.3
Q ss_pred EEEEEEEccce---EEEEcCccccc-----cccCCHHHHHHH
Q 042358 108 IARVVLQEGTG---KFIINYRDAKE-----YLQGNPLWLQYI 141 (193)
Q Consensus 108 iArV~L~pGsG---kI~INgkpl~e-----YF~~~~~~r~~I 141 (193)
+..|-|.||+| +|++||.-+.| =|+....+.+.|
T Consensus 37 lgeV~L~PgTGG~FeI~~dg~~iWeRKrdGGFP~ak~LKQrv 78 (99)
T COG3526 37 LGEVALIPGTGGVFEITCDGVLIWERKRDGGFPEAKVLKQRV 78 (99)
T ss_pred hheEEEecCCCceEEEEECCEEEEEeeccCCCCchHHHHHHH
Confidence 56789999998 78899986644 355444444444
No 68
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=29.81 E-value=60 Score=26.75 Aligned_cols=25 Identities=8% Similarity=-0.089 Sum_probs=17.4
Q ss_pred ecceEEEE---EEEccceEEEEcCcccc
Q 042358 104 RKCAIARV---VLQEGTGKFIINYRDAK 128 (193)
Q Consensus 104 RKtAiArV---~L~pGsGkI~INgkpl~ 128 (193)
=|+...++ .+.|-+|+|.+||+++.
T Consensus 37 GKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 64 (177)
T cd03222 37 GKTTAVKILAGQLIPNGDNDEWDGITPV 64 (177)
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEEE
Confidence 36766665 23567899999998655
No 69
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.33 E-value=73 Score=29.03 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEceecceEEEE---EEEccceEEEEcCccccc
Q 042358 100 GTGRRKCAIARV---VLQEGTGKFIINYRDAKE 129 (193)
Q Consensus 100 ~~GRRKtAiArV---~L~pGsGkI~INgkpl~e 129 (193)
+.|-=|+..=|. .++|-+|+|.|.|+++.+
T Consensus 42 gSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ 74 (263)
T COG1127 42 GSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74 (263)
T ss_pred CCCcCHHHHHHHHhccCCCCCCeEEEcCcchhc
Confidence 344446665553 446888999999987653
No 70
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=28.40 E-value=44 Score=30.10 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=31.2
Q ss_pred EccceEEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEe
Q 042358 114 QEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAH 161 (193)
Q Consensus 114 ~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~Vk 161 (193)
.+.+|+|.|+|+++..|=. .. +. .-|.++...+.++...+|+
T Consensus 52 ~~d~G~i~i~g~~~~~~~s--~~-LA---k~lSILkQ~N~i~~rlTV~ 93 (252)
T COG4604 52 KKDSGEITIDGLELTSTPS--KE-LA---KKLSILKQENHINSRLTVR 93 (252)
T ss_pred cccCceEEEeeeecccCCh--HH-HH---HHHHHHHhhchhhheeEHH
Confidence 4578999999999998832 22 22 3467778888899998883
No 71
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=27.89 E-value=4.8e+02 Score=25.81 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=37.2
Q ss_pred ccceEEEEcCccccccccCCHHHHHHHHHHHH----HhC-ccCccceEEEEecCChhhHHHHHHHHHHHHHHhh
Q 042358 115 EGTGKFIINYRDAKEYLQGNPLWLQYIKVPLV----TLG-YETSYDVFVKAHGGGLSGQAQAITLGVARALLKF 183 (193)
Q Consensus 115 pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~----lt~-~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~~ 183 (193)
||.|.+..+|.... ..++.|..-+. .++ ....+||+|++-||+. -.--+.=+||+=||+..
T Consensus 474 pg~~~vgl~~~~~~-------e~kerv~~A~~~l~~~~g~~~~~~di~vnl~~~~~-k~gpsadLaia~ailSa 539 (615)
T TIGR02903 474 PGKGTVRFNDTAGS-------MAKDSVFNAASVIRKITGKDLSNYDIHVNVIGGGR-IDGPSAGAAITLCMISA 539 (615)
T ss_pred CCCceEeeCCcchH-------HHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCCCC-CCCchHHHHHHHHHHHh
Confidence 67788888875433 23455555555 334 3568999999988763 33334555555555543
No 72
>PRK00555 galactokinase; Provisional
Probab=27.45 E-value=4.8e+02 Score=23.82 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=23.3
Q ss_pred CccceEEEE---ecCChhhHHHHHHHHHHHHHHhhCc
Q 042358 152 TSYDVFVKA---HGGGLSGQAQAITLGVARALLKFCT 185 (193)
Q Consensus 152 ~kyDI~i~V---kGGG~sGQA~AIRlAIARALv~~~p 185 (193)
..+|+.+.- -|.|+++-| |+..|+++||..++.
T Consensus 90 ~g~~i~i~s~iP~g~GLgSSA-A~~va~~~al~~~~~ 125 (363)
T PRK00555 90 PGGAMSITSDVEIGSGLSSSA-ALECAVLGAVGAATG 125 (363)
T ss_pred CCeEEEEecCCCCCCCccHHH-HHHHHHHHHHHHHhC
Confidence 356666543 577877655 788899999988764
No 73
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=26.40 E-value=1.7e+02 Score=27.80 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=20.2
Q ss_pred ceecceEEEEEE---EccceEEEEcCcccccc
Q 042358 102 GRRKCAIARVVL---QEGTGKFIINYRDAKEY 130 (193)
Q Consensus 102 GRRKtAiArV~L---~pGsGkI~INgkpl~eY 130 (193)
|-=|+..+++-+ .|-+|+|.+||+++.++
T Consensus 359 GsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 390 (547)
T PRK10522 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE 390 (547)
T ss_pred CCCHHHHHHHHhCCCCCCCeEEEECCEECCCC
Confidence 334666666532 46789999999988753
No 74
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=25.84 E-value=1.3e+02 Score=30.22 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=48.3
Q ss_pred ecceEEEEE---EEccceEEEEcCccccccccCCHHHHHHH------------------------------HHHHHHhC-
Q 042358 104 RKCAIARVV---LQEGTGKFIINYRDAKEYLQGNPLWLQYI------------------------------KVPLVTLG- 149 (193)
Q Consensus 104 RKtAiArV~---L~pGsGkI~INgkpl~eYF~~~~~~r~~I------------------------------l~PL~lt~- 149 (193)
=|+....-. ..|-+|+|+.||.|+..|= +..+++.| .+-|+-.+
T Consensus 376 GKSTllqLl~~~~~~~~G~i~~~g~~~~~l~--~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL 453 (573)
T COG4987 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLD--EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGL 453 (573)
T ss_pred CHHHHHHHHHhccCCCCCeeeECCcChhhCC--hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCH
Confidence 366555432 2467899999999988773 22233322 22333222
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHhh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLKF 183 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~~ 183 (193)
..+.+|-++--.|=++||= +.=|+||||+|+.-
T Consensus 454 ~~l~~~~p~gl~t~lge~G~~LSGG-E~rRLAlAR~LL~d 492 (573)
T COG4987 454 EKLLESAPDGLNTWLGEGGRRLSGG-ERRRLALARALLHD 492 (573)
T ss_pred HHHHHhChhhhhchhccCCCcCCch-HHHHHHHHHHHHcC
Confidence 2246777777777677763 56699999999983
No 75
>PTZ00243 ABC transporter; Provisional
Probab=25.45 E-value=1.3e+02 Score=33.04 Aligned_cols=80 Identities=26% Similarity=0.275 Sum_probs=45.9
Q ss_pred EceecceEEEEEE---EccceEEEEcCcccccccc-----------CC-----HHHH-----------HHHHHHHHHhCc
Q 042358 101 TGRRKCAIARVVL---QEGTGKFIINYRDAKEYLQ-----------GN-----PLWL-----------QYIKVPLVTLGY 150 (193)
Q Consensus 101 ~GRRKtAiArV~L---~pGsGkI~INgkpl~eYF~-----------~~-----~~~r-----------~~Il~PL~lt~~ 150 (193)
+|-=|++.+..-+ .|-+|+|.|||+++.+|=. .+ ...| +.|.+-+..++.
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l 1424 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGL 1424 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCC
Confidence 3444676666532 3567999999999875421 00 0111 233334443332
Q ss_pred -------cCccceEEEEecCChh-hHHHHHHHHHHHHHHh
Q 042358 151 -------ETSYDVFVKAHGGGLS-GQAQAITLGVARALLK 182 (193)
Q Consensus 151 -------~~kyDI~i~VkGGG~s-GQA~AIRlAIARALv~ 182 (193)
.+.||-.+.-.|.-+| ||- =|++|||||++
T Consensus 1425 ~~~I~~lp~Gldt~vge~G~nLSgGQr--QrLaLARALL~ 1462 (1560)
T PTZ00243 1425 RERVASESEGIDSRVLEGGSNYSVGQR--QLMCMARALLK 1462 (1560)
T ss_pred hHHHhhCcccccccccCCcCcCCHHHH--HHHHHHHHHhc
Confidence 3457766655444444 454 48899999996
No 76
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=25.02 E-value=72 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=17.2
Q ss_pred cceEEEE---EEEccceEEEEcCcccccc
Q 042358 105 KCAIARV---VLQEGTGKFIINYRDAKEY 130 (193)
Q Consensus 105 KtAiArV---~L~pGsGkI~INgkpl~eY 130 (193)
|++..++ .+.|-+|+|.+||+++.++
T Consensus 41 KStLl~~l~G~~~~~~G~i~~~g~~~~~~ 69 (173)
T cd03246 41 KSTLARLILGLLRPTSGRVRLDGADISQW 69 (173)
T ss_pred HHHHHHHHHhccCCCCCeEEECCEEcccC
Confidence 5555554 2346678999999877643
No 77
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=25.00 E-value=2.8e+02 Score=25.60 Aligned_cols=63 Identities=27% Similarity=0.302 Sum_probs=36.4
Q ss_pred EEEEEEEccce-EEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEE-----ecCChhhHHHHHHHHHHHHHH
Q 042358 108 IARVVLQEGTG-KFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKA-----HGGGLSGQAQAITLGVARALL 181 (193)
Q Consensus 108 iArV~L~pGsG-kI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~V-----kGGG~sGQA~AIRlAIARALv 181 (193)
--+|.++.+.| +|..||++.+ ++ . .+++ ++.++-.+ ++|++.. +|=|.| +|+.+|-|.|+.
T Consensus 38 gv~v~v~~~~~~~v~~Ng~~~d--~~---~-~~~v---~e~L~~~~-~~v~~~~~~P~G~G~G~S---ga~AL~~Ala~a 104 (283)
T COG1829 38 GVTVEVRFGEGTGVRLNGKKID--LP---I-TRKV---IEKLGPDG-VGVRIESPVPLGCGYGVS---GAGALGTALALA 104 (283)
T ss_pred ceeEEEEecCCceEEECCeecc--ch---h-HHHH---HHHhCccC-cceEEEecCCCCcccchh---HHHHHHHHHHHH
Confidence 34566777777 8999998766 32 1 2223 33333333 6677666 454444 466666666665
Q ss_pred hh
Q 042358 182 KF 183 (193)
Q Consensus 182 ~~ 183 (193)
..
T Consensus 105 ~~ 106 (283)
T COG1829 105 EE 106 (283)
T ss_pred hh
Confidence 44
No 78
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=24.42 E-value=96 Score=28.98 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=16.1
Q ss_pred cceEEEE---EEEccceEEEEcCcccc
Q 042358 105 KCAIARV---VLQEGTGKFIINYRDAK 128 (193)
Q Consensus 105 KtAiArV---~L~pGsGkI~INgkpl~ 128 (193)
||..=|+ .-.|.+|+|.+||+++.
T Consensus 44 KTTlLR~IAGfe~p~~G~I~l~G~~i~ 70 (352)
T COG3842 44 KTTLLRMIAGFEQPSSGEILLDGEDIT 70 (352)
T ss_pred HHHHHHHHhCCCCCCCceEEECCEECC
Confidence 5544443 23567899999999764
No 79
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=24.14 E-value=33 Score=24.60 Aligned_cols=31 Identities=39% Similarity=0.647 Sum_probs=23.3
Q ss_pred cceEEEEcCccccccccCCHHHHHHHHHHHHHhCcc
Q 042358 116 GTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYE 151 (193)
Q Consensus 116 GsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~ 151 (193)
|..+|.||++. .... |+.++++| ||.-+|++
T Consensus 13 g~sei~~~~rt--kmia-npaf~qki--plietgce 43 (62)
T PF10653_consen 13 GDSEIHINDRT--KMIA-NPAFQQKI--PLIETGCE 43 (62)
T ss_pred CcceeeecchH--HHhc-CHHHHhcc--chhhhhhH
Confidence 77799999986 3344 78888887 78877754
No 80
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.77 E-value=75 Score=30.81 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCccCccceEEEEecCChh
Q 042358 138 LQYIKVPLVTLGYETSYDVFVKAHGGGLS 166 (193)
Q Consensus 138 r~~Il~PL~lt~~~~kyDI~i~VkGGG~s 166 (193)
-..|.+-+...|..+.+|+.|..+|||-.
T Consensus 178 ~~eIv~aI~~an~~~~~DvlIVaRGGGSi 206 (440)
T COG1570 178 AEEIVEAIERANQRGDVDVLIVARGGGSI 206 (440)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCcchH
Confidence 45677788889988889999999999954
No 81
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.79 E-value=1.3e+02 Score=23.73 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=16.8
Q ss_pred cceEEEE---EEEccceEEEEcCccccc
Q 042358 105 KCAIARV---VLQEGTGKFIINYRDAKE 129 (193)
Q Consensus 105 KtAiArV---~L~pGsGkI~INgkpl~e 129 (193)
|++..++ .+.|-+|+|.+||+++..
T Consensus 41 KstLl~~i~G~~~~~~G~i~~~g~~~~~ 68 (171)
T cd03228 41 KSTLLKLLLRLYDPTSGEILIDGVDLRD 68 (171)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCEEhhh
Confidence 5555554 234667899999987654
No 82
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=21.62 E-value=84 Score=28.98 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.6
Q ss_pred cCccceEEEEecCChhhHHHHHHHHH
Q 042358 151 ETSYDVFVKAHGGGLSGQAQAITLGV 176 (193)
Q Consensus 151 ~~kyDI~i~VkGGG~sGQA~AIRlAI 176 (193)
.+..+.+|.|=|||++|-+-|..++=
T Consensus 20 ~~~~~~DVvIIGgGi~Gls~A~~La~ 45 (460)
T TIGR03329 20 VGDTQADVCIVGGGFTGLWTAIMIKQ 45 (460)
T ss_pred CCCceeCEEEECCCHHHHHHHHHHHH
Confidence 44556678888999999999988764
No 83
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=21.48 E-value=71 Score=29.40 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=30.0
Q ss_pred EEEcCccccccccC-CHHHHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHHHHHHHhh
Q 042358 120 FIINYRDAKEYLQG-NPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKF 183 (193)
Q Consensus 120 I~INgkpl~eYF~~-~~~~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~~ 183 (193)
-+|+|+|+.+|... ....++.+..=. ....++| |..||+| -..++..|++|..-.+
T Consensus 185 a~v~G~pl~~~~~~~~~~~~~~i~~~v----~~~g~eI-I~~kG~~---t~~~~A~a~a~~~~ai 241 (313)
T COG0039 185 ATVGGKPLEELLKEDTEEDLEELIERV----RNAGAEI-IEAKGAG---TYYGPAAALARMVEAI 241 (313)
T ss_pred eeECCEEHHHHhhcccHhHHHHHHHHH----HhhHHHH-HHccCcc---chhhHHHHHHHHHHHH
Confidence 37999999999861 222333332211 1122332 4556777 3456666666655444
No 84
>KOG1068 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases [Translation, ribosomal structure and biogenesis]
Probab=21.22 E-value=2e+02 Score=26.00 Aligned_cols=54 Identities=30% Similarity=0.344 Sum_probs=33.7
Q ss_pred EcCccccccccCCHHHHHHHHHHHHHhCc--cCccceEEEEe--cCChh-hHHHHHHHHHHHH
Q 042358 122 INYRDAKEYLQGNPLWLQYIKVPLVTLGY--ETSYDVFVKAH--GGGLS-GQAQAITLGVARA 179 (193)
Q Consensus 122 INgkpl~eYF~~~~~~r~~Il~PL~lt~~--~~kyDI~i~Vk--GGG~s-GQA~AIRlAIARA 179 (193)
.|++...+|- ..++++++|...++. ..+.||+|.|. +|+.. .-..|..+|++-|
T Consensus 91 ~~~rr~~e~s----~~L~~afe~~I~~~lyPrsqIDI~v~VleddG~~laa~inaatlAL~da 149 (245)
T KOG1068|consen 91 KGDRREKELS----LMLQQAFEPVILLELYPRSQIDIYVQVLEDDGSNLAAAINAATLALADA 149 (245)
T ss_pred CccHHHHHHH----HHHHHHHHHHHHhhhCccccceEEEEEEECCCccHHHHHHHHHHHHHHc
Confidence 5666666552 467889999999985 45677777772 33333 3333556666544
No 85
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=21.21 E-value=3.1e+02 Score=25.67 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=40.4
Q ss_pred cceEEEEEEEccce--EEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEe-----cCChhhHHHHHHHHHH
Q 042358 105 KCAIARVVLQEGTG--KFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAH-----GGGLSGQAQAITLGVA 177 (193)
Q Consensus 105 KtAiArV~L~pGsG--kI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~Vk-----GGG~sGQA~AIRlAIA 177 (193)
=+.++.+.+.+..+ .|.+||+.-+++ . . ....++.=+.- .....|++.|... +=|+ |-.-|..-|++
T Consensus 43 ~t~t~~~~~~~~~~~D~~~lNG~~~~~~-~-~--k~~~~ld~~R~-~~~~~~~~~i~s~n~~ptaaGL-aSSaag~AAl~ 116 (329)
T COG3407 43 STTTTAEELTENDEEDTFILNGELSEDE-N-E--KARRVLDRFRK-EYGISFKVKIVSYNNFPTAAGL-ASSAAGAAALA 116 (329)
T ss_pred cceeEEEEecCCCCccEEEECCccCchH-H-H--HHHHHHHHHHH-hhcccceEEEEEecCCCccccc-cccHHHHHHHH
Confidence 34455556666555 699999987765 1 1 11222222221 1112677777663 3333 34457777889
Q ss_pred HHHHh
Q 042358 178 RALLK 182 (193)
Q Consensus 178 RALv~ 182 (193)
+||..
T Consensus 117 ~Al~~ 121 (329)
T COG3407 117 AALNR 121 (329)
T ss_pred HHHHh
Confidence 99988
No 86
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=21.09 E-value=63 Score=29.05 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=16.6
Q ss_pred cceEEEE---EEEccceEEEEcCcccc
Q 042358 105 KCAIARV---VLQEGTGKFIINYRDAK 128 (193)
Q Consensus 105 KtAiArV---~L~pGsGkI~INgkpl~ 128 (193)
|...|+. .+.|-+|+|.|||.++.
T Consensus 52 KSTLakMlaGmi~PTsG~il~n~~~L~ 78 (267)
T COG4167 52 KSTLAKMLAGMIEPTSGEILINDHPLH 78 (267)
T ss_pred HhHHHHHHhcccCCCCceEEECCcccc
Confidence 4444442 33567899999999875
No 87
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=20.57 E-value=77 Score=29.43 Aligned_cols=18 Identities=17% Similarity=0.470 Sum_probs=15.4
Q ss_pred EEccceEEEEcCcccccc
Q 042358 113 LQEGTGKFIINYRDAKEY 130 (193)
Q Consensus 113 L~pGsGkI~INgkpl~eY 130 (193)
+.|.+|+|.|||+++.+|
T Consensus 51 iept~G~I~i~g~~i~~~ 68 (309)
T COG1125 51 IEPTSGEILIDGEDISDL 68 (309)
T ss_pred cCCCCceEEECCeecccC
Confidence 457899999999999875
No 88
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=20.55 E-value=1e+02 Score=26.26 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=20.3
Q ss_pred EEEceec-ceEEEEEEEccce---EEEEcCcccccccc
Q 042358 99 FGTGRRK-CAIARVVLQEGTG---KFIINYRDAKEYLQ 132 (193)
Q Consensus 99 ~~~GRRK-tAiArV~L~pGsG---kI~INgkpl~eYF~ 132 (193)
+.+|.++ .+..++...+|.. .+.|||+++++|-.
T Consensus 55 F~ig~~~~k~~I~I~~~~g~~YeYsL~VdGksl~ky~e 92 (177)
T PF06905_consen 55 FTIGGKNTKCEINIEAVSGFAYEYSLEVDGKSLKKYKE 92 (177)
T ss_dssp EEETTTTEEEEEEEEEETTTEEEEEEEETTEEEEE--S
T ss_pred EEECCCceEEEEEEEecCCceEEEEEEECCEEHHHHHH
Confidence 5678553 3333444455543 56799999999965
Done!