Query 042358
Match_columns 193
No_of_seqs 124 out of 1073
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_I Ribosomal protein S9; s 100.0 5.2E-52 1.8E-56 349.4 2.9 165 26-193 1-167 (197)
2 2vqe_I 30S ribosomal protein S 100.0 3.1E-37 1E-41 245.1 6.3 95 98-193 4-98 (128)
3 3r8n_I 30S ribosomal protein S 100.0 1.4E-37 4.8E-42 246.7 4.1 96 97-193 2-97 (127)
4 2zkq_i 40S ribosomal protein S 100.0 1.1E-35 3.9E-40 240.5 7.5 100 92-193 4-110 (146)
5 2xzm_I RPS16E; ribosome, trans 100.0 2.2E-35 7.6E-40 238.6 5.9 95 96-192 7-108 (145)
6 3u5c_Q RP61R, 40S ribosomal pr 100.0 5.6E-35 1.9E-39 235.7 5.9 96 95-192 4-106 (143)
7 3j20_K 30S ribosomal protein S 100.0 7.6E-35 2.6E-39 233.0 6.4 94 97-192 3-100 (135)
8 3iz6_I 40S ribosomal protein S 100.0 8.9E-35 3E-39 235.9 -19.8 96 96-193 11-113 (149)
9 4f4c_A Multidrug resistance pr 87.7 0.38 1.3E-05 48.9 4.1 77 104-182 1117-1234(1321)
10 4f4c_A Multidrug resistance pr 80.4 1.3 4.6E-05 45.0 4.4 80 102-182 454-571 (1321)
11 3nh6_A ATP-binding cassette SU 54.3 11 0.00038 32.3 3.9 30 152-182 178-207 (306)
12 3qf4_A ABC transporter, ATP-bi 52.8 14 0.00048 34.0 4.6 30 152-182 467-496 (587)
13 1rre_A ATP-dependent protease 43.5 24 0.00082 28.6 4.1 69 111-183 31-111 (200)
14 1hyu_A AHPF, alkyl hydroperoxi 40.0 26 0.00088 31.4 4.2 20 156-175 213-232 (521)
15 3g5u_A MCG1178, multidrug resi 37.2 21 0.00071 36.3 3.4 31 151-182 513-543 (1284)
16 3b5x_A Lipid A export ATP-bind 37.1 29 0.00098 31.7 4.0 29 153-182 469-497 (582)
17 2x36_A LON protease homolog, m 35.4 34 0.0012 28.0 3.8 64 115-182 43-118 (207)
18 4a82_A Cystic fibrosis transme 33.1 28 0.00097 31.8 3.3 30 152-182 465-494 (578)
19 4b1b_A TRXR, thioredoxin reduc 30.8 32 0.0011 31.6 3.3 24 152-175 39-62 (542)
20 3m6a_A ATP-dependent protease 30.0 1.1E+02 0.0038 27.7 6.7 69 111-181 374-452 (543)
21 2chh_A Protein RSC3288; lectin 28.0 39 0.0013 26.2 2.8 47 77-128 25-75 (114)
22 2bv4_A Lectin CV-IIL; mannose; 27.5 40 0.0014 26.0 2.8 47 77-128 24-74 (113)
23 3mx7_A FAS apoptotic inhibitor 25.1 53 0.0018 24.3 3.0 32 98-130 53-89 (90)
24 1k8k_F P20, ARP2/3 complex 20 23.7 42 0.0014 27.5 2.4 99 20-132 14-128 (168)
25 3fpz_A Thiazole biosynthetic e 23.5 32 0.0011 28.2 1.7 27 153-179 63-89 (326)
26 1uzv_A Pseudomonas aeruginosa 22.8 56 0.0019 25.2 2.8 47 77-128 24-75 (114)
27 3jsk_A Cypbp37 protein; octame 22.5 62 0.0021 28.4 3.4 22 153-176 79-100 (344)
28 3fmw_A Oxygenase; mithramycin, 21.7 50 0.0017 30.2 2.7 21 156-176 50-70 (570)
No 1
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=5.2e-52 Score=349.45 Aligned_cols=165 Identities=68% Similarity=1.042 Sum_probs=92.5
Q ss_pred ccceeeeccccCCCCCCceecccccccccCCCCCCCCceEEeee-ccC-CcchhhhhhhhhhhccCCCCccceeEEEEce
Q 042358 26 LSSLSFSSQISQKPGIPFVSLHRSKSISISPKNDKTPKLVVSAT-EAA-PAELETTDLKKYVKSRLPGGFAAQTIFGTGR 103 (193)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~e~~~l~~~v~~r~~~~~~~~~~~~~GR 103 (193)
||||||+||++|+|++ ++|+|.+.++ ++++.++.+|+++|+ .++ ++++|.++|++|++++++..+..+.++++||
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~tGR 77 (197)
T 3bbn_I 1 FASLSFTSNLTPKPQT--LPMARTKPFS-LSNPAVVKPLVITATSATAPVEVAETADLEKFVKSRLPGGFAAQTVIGTGR 77 (197)
T ss_dssp -------------------------------------------------------------------------CBCCCCE
T ss_pred CccccccccccCCCCC--Ccchhccccc-CCccccccceEEEeeeccCCcchhHHHHHHHHHHHhcccccCccEEEEEee
Confidence 6899999999999999 9999998666 788889999999998 444 5777778999999999998888888899999
Q ss_pred ecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHHHHHHHhh
Q 042358 104 RKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKF 183 (193)
Q Consensus 104 RKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~~ 183 (193)
||+|+|+|||+||+|+|+|||+|+++||+.++.++++|++||.+++.+++|||+|+|+|||.+|||+||||||||||+++
T Consensus 78 RKtAvArV~l~~G~G~I~VNg~~l~~YF~~~~~~~~~v~~PL~l~~~~~k~DI~v~V~GGG~sGQA~AIR~gIARALv~~ 157 (197)
T 3bbn_I 78 RKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKV 157 (197)
T ss_dssp ETTEEEEEEEEESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEESSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCceEEEEEEEcCceeEEECCCcHHHHcCccHHHHHHHHHHHHHhCccCceeEEEEEecCCeehHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997566666799999999999999999999999999999999999999999999
Q ss_pred CccCcCCCCC
Q 042358 184 CTSVPGIMES 193 (193)
Q Consensus 184 ~p~~R~~Lk~ 193 (193)
||++|+.||+
T Consensus 158 ~~~~r~~LK~ 167 (197)
T 3bbn_I 158 SASHRAPLKQ 167 (197)
T ss_dssp CGGGSHHHHT
T ss_pred CHHHHHHHHH
Confidence 9999998874
No 2
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=100.00 E-value=3.1e-37 Score=245.08 Aligned_cols=95 Identities=38% Similarity=0.615 Sum_probs=91.6
Q ss_pred EEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHHH
Q 042358 98 IFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVA 177 (193)
Q Consensus 98 ~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAIA 177 (193)
++++||||+|+|+|||.||+|+|+|||+|+++||+ ++.++++|++||.+++..++|||+|+|+|||.+|||+|||||||
T Consensus 4 ~~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~-~~~~r~~v~~Pl~~~~~~~~~Di~v~V~GGG~sgQA~AiR~gIa 82 (128)
T 2vqe_I 4 YYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQ-GLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIA 82 (128)
T ss_dssp EEECCEETTEEEEEEEEESSCCEEESSSBHHHHSS-SCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cEEeCcCCCEEEEEEEEcCceEEEECCCcHHHHcC-CHHHHHHHHhHHHHHcccCceeEEEEEEcCCeehHHHHHHHHHH
Confidence 58999999999999999999999999999999998 67788999999999999999999999999999999999999999
Q ss_pred HHHHhhCccCcCCCCC
Q 042358 178 RALLKFCTSVPGIMES 193 (193)
Q Consensus 178 RALv~~~p~~R~~Lk~ 193 (193)
|||+++||++|+.||+
T Consensus 83 rAL~~~~~~~r~~Lk~ 98 (128)
T 2vqe_I 83 RALVQYNPDYRAKLKP 98 (128)
T ss_dssp HHHHHHCGGGHHHHTT
T ss_pred HHHHHHCHHHHHHHHH
Confidence 9999999999999874
No 3
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=100.00 E-value=1.4e-37 Score=246.75 Aligned_cols=96 Identities=34% Similarity=0.625 Sum_probs=92.9
Q ss_pred eEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCccCccceEEEEecCChhhHHHHHHHHH
Q 042358 97 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGV 176 (193)
Q Consensus 97 ~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~~kyDI~i~VkGGG~sGQA~AIRlAI 176 (193)
.++++||||+|+|+|||+||+|+|+|||+|+++||+ ++.++++|++||.+++..++|||+|+|+|||.+|||+||||||
T Consensus 2 ~~~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~-~~~~r~~v~~Pl~~~~~~~~~Di~v~V~GGG~~gQa~Air~aI 80 (127)
T 3r8n_I 2 QYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFG-RETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGI 80 (127)
T ss_dssp CEEECCCCTTCEEEEEEEESCSCEEETTBCSTTTTT-TSTTTTTTTGGGSSSCCSSSEEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceeECCCeeEEEEEEEEeCcEEEEECCEeHHHHcC-CHHHHHHHHHHHHHhCccCccceEEEEECCCeecHHHHHHHHH
Confidence 468999999999999999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred HHHHHhhCccCcCCCCC
Q 042358 177 ARALLKFCTSVPGIMES 193 (193)
Q Consensus 177 ARALv~~~p~~R~~Lk~ 193 (193)
||||+++||++|+.||+
T Consensus 81 arAL~~~d~~~r~~Lk~ 97 (127)
T 3r8n_I 81 TRALMEYDESLRSELRK 97 (127)
T ss_dssp HTTTTTTCSSSTTTTTT
T ss_pred HHHHHHHCHHHHHHHHH
Confidence 99999999999999985
No 4
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.1e-35 Score=240.47 Aligned_cols=100 Identities=24% Similarity=0.295 Sum_probs=91.3
Q ss_pred CccceeEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCc--cCccceEEEEecCChhhHH
Q 042358 92 GFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGY--ETSYDVFVKAHGGGLSGQA 169 (193)
Q Consensus 92 ~~~~~~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~--~~kyDI~i~VkGGG~sGQA 169 (193)
.+..+.++++||||+|+|+|||.||+|+|+|||+|+ +||+ ++.++++|++||.+++. .++|||+|+|+|||.+|||
T Consensus 4 ~~~~~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~l-eyf~-~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA 81 (146)
T 2zkq_i 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPL-EMIE-PRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQI 81 (146)
T ss_dssp ----CCEEECCBCSSCEEEEEEEESSSCEEETTEEH-HHHS-TTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHH
T ss_pred CCCCceEEEEeeCCCeEEEEEEEcCCeeEEEcCcCH-HHcC-cHHHHHHHHHHHHHhCccccCceEEEEEEEcCCeehHH
Confidence 344567899999999999999999999999999999 6998 67889999999999994 6999999999999999999
Q ss_pred HHHHHHHHHHHHhh-----CccCcCCCCC
Q 042358 170 QAITLGVARALLKF-----CTSVPGIMES 193 (193)
Q Consensus 170 ~AIRlAIARALv~~-----~p~~R~~Lk~ 193 (193)
+||||||||||+.+ ||++|+.||+
T Consensus 82 ~AiR~aIArAL~~~~~k~~d~~~r~~Lk~ 110 (146)
T 2zkq_i 82 YAIRQSISKALVAYYQKYVDEASKKEIKD 110 (146)
T ss_dssp HHHHHHHHHHHHHHCTTCTTSSSCCCCCS
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 99999999999999 9999999985
No 5
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=100.00 E-value=2.2e-35 Score=238.61 Aligned_cols=95 Identities=20% Similarity=0.339 Sum_probs=90.4
Q ss_pred eeEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhC--ccCccceEEEEecCChhhHHHHHH
Q 042358 96 QTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLG--YETSYDVFVKAHGGGLSGQAQAIT 173 (193)
Q Consensus 96 ~~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~--~~~kyDI~i~VkGGG~sGQA~AIR 173 (193)
+.++++||||+|+|+|||+||+|+|+|||+|++ ||+ ++.++++|++||.+++ ..++|||+|+|+|||.+|||+|||
T Consensus 7 ~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~l~-yf~-~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR 84 (145)
T 2xzm_I 7 QLVQTFGRKKNAVAVASVRPGKGLLKVNGSPID-MIN-PQILQAKIYEPILLLGQQKFANLDIRIRVRGSGYTSQVYAIR 84 (145)
T ss_dssp SCEEEEEEETTEEEEEEEEESSCEEEESSSBGG-GCS-STTTHHHHHHHHHHHCHHHHHHEEEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEeECCCEEEEEEEEeCceEEEECCEeHH-HcC-cHHHHHHHHHHHHHhChhhhCceeEEEEEEcCCeecHHHHHH
Confidence 568999999999999999999999999999999 998 7788999999999999 799999999999999999999999
Q ss_pred HHHHHHHHhh-----CccCcCCCC
Q 042358 174 LGVARALLKF-----CTSVPGIME 192 (193)
Q Consensus 174 lAIARALv~~-----~p~~R~~Lk 192 (193)
|||||||+.+ ||++|+.||
T Consensus 85 ~aIArAL~~~~~k~~d~~~r~~Lk 108 (145)
T 2xzm_I 85 QALSKGIVAYHAKYVDENSKREIK 108 (145)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHH
Confidence 9999999999 998888776
No 6
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=100.00 E-value=5.6e-35 Score=235.69 Aligned_cols=96 Identities=21% Similarity=0.294 Sum_probs=88.5
Q ss_pred ceeEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCc--cCccceEEEEecCChhhHHHHH
Q 042358 95 AQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGY--ETSYDVFVKAHGGGLSGQAQAI 172 (193)
Q Consensus 95 ~~~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~--~~kyDI~i~VkGGG~sGQA~AI 172 (193)
.+.++++||||+|+|+|||+||+|+|+|||+|+++||+ +.++++|++||.+++. .++|||+|+|+|||++|||+||
T Consensus 4 ~~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~--~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~Ai 81 (143)
T 3u5c_Q 4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEP--EILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAI 81 (143)
T ss_dssp CCEEEEEECSTTCEEEEEEEECSCCEEETTEETTTCSS--CSTHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHH
T ss_pred cceEEEeccCcceEEEEEEEeCceEEEECCCcHHHHCh--HHHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHH
Confidence 35789999999999999999999999999999999997 3678999999999986 4899999999999999999999
Q ss_pred HHHHHHHHHhh-----CccCcCCCC
Q 042358 173 TLGVARALLKF-----CTSVPGIME 192 (193)
Q Consensus 173 RlAIARALv~~-----~p~~R~~Lk 192 (193)
||||||||+++ ||++|+.||
T Consensus 82 R~aIArAL~~~~~~~vd~~~r~~LK 106 (143)
T 3u5c_Q 82 RQAIAKGLVAYHQKYVDEQSKNELK 106 (143)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 99999999998 777777665
No 7
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=7.6e-35 Score=233.04 Aligned_cols=94 Identities=37% Similarity=0.486 Sum_probs=87.8
Q ss_pred eEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhC--ccCccceEEEEecCChhhHHHHHHH
Q 042358 97 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLG--YETSYDVFVKAHGGGLSGQAQAITL 174 (193)
Q Consensus 97 ~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~--~~~kyDI~i~VkGGG~sGQA~AIRl 174 (193)
.++++||||+|+|+|||+||+|+|+|||+|+++||+ +.++++|++||.+++ ..++|||+|+|+|||++|||+||||
T Consensus 3 ~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~--~~~r~~i~~Pl~l~~~~~~~~~Di~v~V~GGG~~gQA~AiR~ 80 (135)
T 3j20_K 3 IIQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEP--EIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARM 80 (135)
T ss_dssp CEEEEEEETTEEEEEEEEESSCCEEETTEEGGGCSC--SHHHHHHSHHHHHHCHHHHHHEEEEEEEECSCHHHHHHHHHH
T ss_pred EEEEeCcCccEEEEEEEEeCceEEEECCeeHHHHCh--HHHHHHhhCChhhcchhhcccccEEEEEECCCEechHhHHHH
Confidence 468999999999999999999999999999998874 688999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhhC--ccCcCCCC
Q 042358 175 GVARALLKFC--TSVPGIME 192 (193)
Q Consensus 175 AIARALv~~~--p~~R~~Lk 192 (193)
||||||++++ |++|+.|+
T Consensus 81 aIarAL~~~~~~~~lr~~l~ 100 (135)
T 3j20_K 81 AIARALVEWTGDMSLKEKFM 100 (135)
T ss_dssp HHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHH
Confidence 9999999995 78887764
No 8
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=8.9e-35 Score=235.94 Aligned_cols=96 Identities=22% Similarity=0.272 Sum_probs=76.1
Q ss_pred eeEEEEceecceEEEEEEEccceEEEEcCccccccccCCHHHHHHHHHHHHHhCcc--CccceEEEEecCChhhHHHHHH
Q 042358 96 QTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYE--TSYDVFVKAHGGGLSGQAQAIT 173 (193)
Q Consensus 96 ~~~~~~GRRKtAiArV~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~lt~~~--~kyDI~i~VkGGG~sGQA~AIR 173 (193)
+.++++||||+|+|+|||+||+|+|+|||+|+++||+ +.++++|++||.+++.+ ++|||+|+|+|||.+|||+|||
T Consensus 11 ~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~--~~~r~~v~~Pl~l~~~~~~~~~DI~v~V~GGG~sgQA~AiR 88 (149)
T 3iz6_I 11 GTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRP--EMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIR 88 (149)
T ss_dssp -------------CCCCCCCCCCSSSEECCCCCCSSC--CEEESSSBHHHHTCSCHHHHHHHTTTTTTSCSTTCCEEECE
T ss_pred cEEEEeccCcceEEEEEEEeCcEEEEECCCcHHHHCh--HHHHHHHHHHHHHHhHhccCceeEEEEEeCCCeecHHHHHH
Confidence 4578999999999999999999999999999999997 36788999999999864 8999999999999999999999
Q ss_pred HHHHHHHHhh-----CccCcCCCCC
Q 042358 174 LGVARALLKF-----CTSVPGIMES 193 (193)
Q Consensus 174 lAIARALv~~-----~p~~R~~Lk~ 193 (193)
|||||||+.+ ||++|+.||+
T Consensus 89 ~gIArALv~~~~~~vd~~~r~~LK~ 113 (149)
T 3iz6_I 89 QAIAKALVAYYQKYVDEASKKEVKD 113 (149)
T ss_dssp ESSCTTTHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 9999999998 7777776663
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.71 E-value=0.38 Score=48.94 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=49.0
Q ss_pred ecceEEEEEE---EccceEEEEcCccccccc------------cC----CHHHH--------------HHHHHHHHHhC-
Q 042358 104 RKCAIARVVL---QEGTGKFIINYRDAKEYL------------QG----NPLWL--------------QYIKVPLVTLG- 149 (193)
Q Consensus 104 RKtAiArV~L---~pGsGkI~INgkpl~eYF------------~~----~~~~r--------------~~Il~PL~lt~- 149 (193)
=|++.+..-+ .|-+|+|.|||+++.++= |+ +...+ +.|.+-+...+
T Consensus 1117 GKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l 1196 (1321)
T 4f4c_A 1117 GKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196 (1321)
T ss_dssp STTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCC
Confidence 3666665522 467899999999987641 10 00112 23444555443
Q ss_pred ------ccCccceEEEEecCChh-hHHHHHHHHHHHHHHh
Q 042358 150 ------YETSYDVFVKAHGGGLS-GQAQAITLGVARALLK 182 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~s-GQA~AIRlAIARALv~ 182 (193)
+.++||-.|--+|..+| ||.| |++|||||++
T Consensus 1197 ~~~I~~Lp~GldT~vge~G~~LSgGQrQ--riaiARAllr 1234 (1321)
T 4f4c_A 1197 HNFIAELPEGFETRVGDRGTQLSGGQKQ--RIAIARALVR 1234 (1321)
T ss_dssp HHHHHTSTTTTCSEETTTSCSSCHHHHH--HHHHHHHHHS
T ss_pred hHHHHcCcCCCCCEecCCCcccCHHHHH--HHHHHHHHHh
Confidence 45789988876666665 4665 8999999987
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=80.45 E-value=1.3 Score=44.98 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=51.5
Q ss_pred ceecceEEEEEE---EccceEEEEcCcccccc----------------------------ccCCHHHHHHHHHHHHHhC-
Q 042358 102 GRRKCAIARVVL---QEGTGKFIINYRDAKEY----------------------------LQGNPLWLQYIKVPLVTLG- 149 (193)
Q Consensus 102 GRRKtAiArV~L---~pGsGkI~INgkpl~eY----------------------------F~~~~~~r~~Il~PL~lt~- 149 (193)
|-=|++..+.-+ .|-+|+|.|||+++.++ |.......+.+.+-+...+
T Consensus 454 GsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533 (1321)
T ss_dssp SSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccc
Confidence 334666665532 46689999999987654 1111112334555555443
Q ss_pred ------ccCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 150 ------YETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 150 ------~~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+.+.||-.|--+|..+||= |--|.||||||++
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGG-QkQRiaiARAl~~ 571 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGG-QKQRIAIARALVR 571 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHH-HHHHHHHHHHHTT
T ss_pred hhHHHcCCCCCccEecCCCCCCCHH-HHHHHHHHHHHcc
Confidence 4578999998888778763 2339999999986
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=54.34 E-value=11 Score=32.32 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=20.8
Q ss_pred CccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 152 TSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 152 ~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..||-.+.-+|..+|| =+.=|.+|||||+.
T Consensus 178 ~gl~t~~~~~g~~LSG-GqrQRvaiARAL~~ 207 (306)
T 3nh6_A 178 EGYRTQVGERGLKLSG-GEKQRVAIARTILK 207 (306)
T ss_dssp TGGGCEESTTSBCCCH-HHHHHHHHHHHHHH
T ss_pred chhhhHhcCCcCCCCH-HHHHHHHHHHHHHh
Confidence 3577666656666654 34469999999986
No 12
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=52.80 E-value=14 Score=34.02 Aligned_cols=30 Identities=43% Similarity=0.608 Sum_probs=22.0
Q ss_pred CccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 152 TSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 152 ~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
+.+|-.+.-+|..+|| =+.=|.+|||||+.
T Consensus 467 ~g~~~~~~~~~~~LSg-GqrQrv~lARal~~ 496 (587)
T 3qf4_A 467 EGYDSRVERGGRNFSG-GQKQRLSIARALVK 496 (587)
T ss_dssp SGGGCEECSSSCSSCH-HHHHHHHHHHHHHT
T ss_pred cchhhHhcCCCCCcCH-HHHHHHHHHHHHHc
Confidence 4677777666766665 34569999999986
No 13
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=43.48 E-value=24 Score=28.62 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=40.6
Q ss_pred EEEEccceEEEEcCccccccccCCHHHHHHHHHHHH----HhCc----cCccceEEEEecCCh--hhHHH--HHHHHHHH
Q 042358 111 VVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLV----TLGY----ETSYDVFVKAHGGGL--SGQAQ--AITLGVAR 178 (193)
Q Consensus 111 V~L~pGsGkI~INgkpl~eYF~~~~~~r~~Il~PL~----lt~~----~~kyDI~i~VkGGG~--sGQA~--AIRlAIAR 178 (193)
|.+.+|.|.+.+.|.+-+. .+ .-++.+..-+. -.+. ..++||++.+-||.. .|-+. ||..||.-
T Consensus 31 ~~~~~G~g~~~itG~~~~~-~k---ES~~~a~s~~~~~~~~~g~~~~~~~~~di~vnl~~g~~~k~GpsadLaia~AilS 106 (200)
T 1rre_A 31 TACVPGKGKLTYTGSLGEV-MQ---ESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVS 106 (200)
T ss_dssp EEEEECSSCEEEESSBCHH-HH---HHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSSTTSCEESSTTHHHHHHHHHH
T ss_pred EEEeCCCceEEEecCchHH-HH---HHHHHHHHHHHHhHHhcCCCcccCCcceEEEEeCCccccCCCCcchHHHHHHHHH
Confidence 3456899999999976442 22 12333333333 3343 567899999987754 33332 66666666
Q ss_pred HHHhh
Q 042358 179 ALLKF 183 (193)
Q Consensus 179 ALv~~ 183 (193)
++...
T Consensus 107 a~~~~ 111 (200)
T 1rre_A 107 CLTGN 111 (200)
T ss_dssp HHHTC
T ss_pred HcCCC
Confidence 65543
No 14
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=40.04 E-value=26 Score=31.36 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=16.1
Q ss_pred eEEEEecCChhhHHHHHHHH
Q 042358 156 VFVKAHGGGLSGQAQAITLG 175 (193)
Q Consensus 156 I~i~VkGGG~sGQA~AIRlA 175 (193)
.++.|=|||+.|-+-|+.++
T Consensus 213 ~dVvIIGgG~AGl~aA~~la 232 (521)
T 1hyu_A 213 YDVLIVGSGPAGAAAAVYSA 232 (521)
T ss_dssp EEEEEECCSHHHHHHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHH
Confidence 44677799999999888754
No 15
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=37.25 E-value=21 Score=36.27 Aligned_cols=31 Identities=35% Similarity=0.625 Sum_probs=22.2
Q ss_pred cCccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 151 ETSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 151 ~~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
...||-.+.-+|..+|| -+-=|.+|||||+.
T Consensus 513 ~~g~~t~~~~~g~~LSg-Gq~QriaiARal~~ 543 (1284)
T 3g5u_A 513 PHQFDTLVGERGAQLSG-GQKQRIAIARALVR 543 (1284)
T ss_dssp TTGGGCCCSSSSCSSCH-HHHHHHHHHHHHHH
T ss_pred cccccccccCCCCccCH-HHHHHHHHHHHHhc
Confidence 35677666666666665 35569999999986
No 16
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=37.06 E-value=29 Score=31.73 Aligned_cols=29 Identities=38% Similarity=0.595 Sum_probs=19.8
Q ss_pred ccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 153 SYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 153 kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
.||-.+.-+|..+||= +-=|.+|||||+.
T Consensus 469 g~~t~~~~~~~~LSgG-q~qr~~iAral~~ 497 (582)
T 3b5x_A 469 GLDTVIGENGTSLSGG-QRQRVAIARALLR 497 (582)
T ss_pred cccchhcCCCCcCCHH-HHHHHHHHHHHHc
Confidence 4666665566666652 3448999999986
No 17
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens}
Probab=35.40 E-value=34 Score=27.96 Aligned_cols=64 Identities=8% Similarity=0.103 Sum_probs=32.8
Q ss_pred ccceEEEEcCccccccccCCHHHHHHHHH-----HHHHh--C-ccCccceEEEEecCChh--hH--HHHHHHHHHHHHHh
Q 042358 115 EGTGKFIINYRDAKEYLQGNPLWLQYIKV-----PLVTL--G-YETSYDVFVKAHGGGLS--GQ--AQAITLGVARALLK 182 (193)
Q Consensus 115 pGsGkI~INgkpl~eYF~~~~~~r~~Il~-----PL~lt--~-~~~kyDI~i~VkGGG~s--GQ--A~AIRlAIARALv~ 182 (193)
+|+|++.+.|.+-+.. + + -++.+.. .+.+. + ...+.||+|.+-||-.- |- --||.+||.-++..
T Consensus 43 ~g~g~~~itG~~~~~~-k--E-S~~~a~s~~~~~~~~~~~~~~~~~~~di~vnl~~g~~~K~GpsadLaia~AilSa~~~ 118 (207)
T 2x36_A 43 DKDGSLEVTGQLGEVM-K--E-SARIAYTFARAFLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMG 118 (207)
T ss_dssp ---CEEEEESCCCHHH-H--H-HHHHHHHHHHHHHHHHSTTCCHHHHCEEEEECCSCBCTTTGGGGHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCchHHH-H--H-HHHHHHHHHHhcccccccccccCccceEEEEeCCcccCCCCCcchHHHHHHHHHHcCC
Confidence 7999999999754422 2 1 1112211 22111 1 24579999999887533 22 22666666666544
No 18
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=33.12 E-value=28 Score=31.80 Aligned_cols=30 Identities=40% Similarity=0.536 Sum_probs=20.8
Q ss_pred CccceEEEEecCChhhHHHHHHHHHHHHHHh
Q 042358 152 TSYDVFVKAHGGGLSGQAQAITLGVARALLK 182 (193)
Q Consensus 152 ~kyDI~i~VkGGG~sGQA~AIRlAIARALv~ 182 (193)
..+|-.+.-+|..+|| =+-=|.+|||||+.
T Consensus 465 ~g~~t~~~~~g~~LSg-Gq~Qrv~lAral~~ 494 (578)
T 4a82_A 465 QGYDTEVGERGVKLSG-GQKQRLSIARIFLN 494 (578)
T ss_dssp TGGGCBCCGGGTTSCH-HHHHHHHHHHHHHH
T ss_pred chhhhhhccCCCcCCH-HHHHHHHHHHHHHc
Confidence 4567666556666654 34569999999986
No 19
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=30.80 E-value=32 Score=31.58 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.7
Q ss_pred CccceEEEEecCChhhHHHHHHHH
Q 042358 152 TSYDVFVKAHGGGLSGQAQAITLG 175 (193)
Q Consensus 152 ~kyDI~i~VkGGG~sGQA~AIRlA 175 (193)
..||.++.|=|||..|..-|++.+
T Consensus 39 ~~ydYDviVIG~GpaG~~aA~~aa 62 (542)
T 4b1b_A 39 HTYDYDYVVIGGGPGGMASAKEAA 62 (542)
T ss_dssp CCSSEEEEEECCSHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCHHHHHHHHHHH
Confidence 458888889999999999998865
No 20
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=30.04 E-value=1.1e+02 Score=27.73 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=36.5
Q ss_pred EEEEccceEEEEcCccccccccCCHHHH--HHHHHHHHHhCc----cCccceEEEEecCC--hhhHHH--HHHHHHHHHH
Q 042358 111 VVLQEGTGKFIINYRDAKEYLQGNPLWL--QYIKVPLVTLGY----ETSYDVFVKAHGGG--LSGQAQ--AITLGVARAL 180 (193)
Q Consensus 111 V~L~pGsGkI~INgkpl~eYF~~~~~~r--~~Il~PL~lt~~----~~kyDI~i~VkGGG--~sGQA~--AIRlAIARAL 180 (193)
|.+.+|.|++++.|.+-+.. + ....+ ..+..-+.-.+. ..++||+|.+-||. ..|-+. ||..||.-++
T Consensus 374 ~~~~~g~~~~~~~G~~~~~~-~-es~~~a~~~v~~~~~~~g~~~~~~~~~di~v~~~~g~~~k~gpsa~l~ia~ai~s~~ 451 (543)
T 3m6a_A 374 VSLSPGKGKLILTGKLGDVM-R-ESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVPEGAVPKDGPAAGITMATALVSAL 451 (543)
T ss_dssp EEEESSCSCEEEEESCCHHH-H-HHHHHHHHHHTSSCGGGSSCSSCTTTCEEEEEECTTBCGGGGGGGHHHHHHHHHHHH
T ss_pred EEeeCCCCceEEecCchHHH-H-HHHHHHHHHHHHHHHHcCCCccccCCcceEEEeCCCCCCCCCchhHHHHHHHHHHHc
Confidence 34568999999999753321 1 01101 112222222332 46789999999984 333222 5555555555
Q ss_pred H
Q 042358 181 L 181 (193)
Q Consensus 181 v 181 (193)
.
T Consensus 452 ~ 452 (543)
T 3m6a_A 452 T 452 (543)
T ss_dssp T
T ss_pred c
Confidence 3
No 21
>2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} SCOP: b.115.1.1 PDB: 1uqx_A*
Probab=28.01 E-value=39 Score=26.17 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=31.8
Q ss_pred hhhhhhhhhhccCCCCccceeEEEEceecceEEEEEEEccceEEE----EcCcccc
Q 042358 77 ETTDLKKYVKSRLPGGFAAQTIFGTGRRKCAIARVVLQEGTGKFI----INYRDAK 128 (193)
Q Consensus 77 e~~~l~~~v~~r~~~~~~~~~~~~~GRRKtAiArV~L~pGsGkI~----INgkpl~ 128 (193)
++|.++-|+..... ....+.|-+-.-.+.-.+..|+|+|. .||||-.
T Consensus 25 ~~QtikvyIdd~~~-----aT~tg~gt~d~~~gt~~l~Sg~GkVriev~~nGKps~ 75 (114)
T 2chh_A 25 NTQTIQVLVDNVVK-----ATFTGSGTSDKLLGSQVLNSGSGAIKIQVSVNGKPSD 75 (114)
T ss_dssp EEEEEEEEETTEEE-----EEEEEEEEEEEEEEEEEEECTTSEEEEEEEETTEECE
T ss_pred CceeEEEEECCeec-----ceeeccCcCCCccceEEEecCCCeEEEEEEeCCcccc
Confidence 56788888887431 23346665555556677889999765 5999765
No 22
>2bv4_A Lectin CV-IIL; mannose; HET: MMA; 1.0A {Chromobacterium violaceum} PDB: 2boi_A*
Probab=27.48 E-value=40 Score=26.04 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=31.8
Q ss_pred hhhhhhhhhhccCCCCccceeEEEEceecceEEEEEEEccceEEE----EcCcccc
Q 042358 77 ETTDLKKYVKSRLPGGFAAQTIFGTGRRKCAIARVVLQEGTGKFI----INYRDAK 128 (193)
Q Consensus 77 e~~~l~~~v~~r~~~~~~~~~~~~~GRRKtAiArV~L~pGsGkI~----INgkpl~ 128 (193)
++|.++-|+..... ....+.|-+-.-.+.-.+..|+|+|. .||||-.
T Consensus 24 ~~QtikvyIdd~~~-----aT~tg~gt~d~~~~t~~l~Sg~GkVriev~~nGKps~ 74 (113)
T 2bv4_A 24 ATQHVEIFVDNEPR-----AAFSGVGTGDNNLGTKVINSGSGNVRVQITANGRQSD 74 (113)
T ss_dssp EEEEEEEEETTEEE-----EEEEEEEEEEEEEEEEEEECTTSEEEEEEEETTEECE
T ss_pred CceeEEEEECCeec-----ceeeccCcCCCccceEEEecCCCeEEEEEEeCCcccc
Confidence 56788888887431 23346665555556677889999764 5999765
No 23
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=25.11 E-value=53 Score=24.26 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=21.8
Q ss_pred EEEEceecceEEEEEEEccce-----EEEEcCcccccc
Q 042358 98 IFGTGRRKCAIARVVLQEGTG-----KFIINYRDAKEY 130 (193)
Q Consensus 98 ~~~~GRRKtAiArV~L~pGsG-----kI~INgkpl~eY 130 (193)
.+.+|+.| ..|.+++.+..| ...|||+++++|
T Consensus 53 ~F~ig~~~-~k~~I~I~a~~~~~y~YtL~VngKslk~f 89 (90)
T 3mx7_A 53 TFYVGAAK-TKATINIDAISGFAYEYTLEINGKSLKKY 89 (90)
T ss_dssp EEEETTTT-EEEEEEEEEETTTEEEEEEEETTEEEEEC
T ss_pred eEEECCcc-eEEEEEEEecCCccEEEEEEECCEeHHHc
Confidence 35677633 466777766433 467999999987
No 24
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=23.68 E-value=42 Score=27.52 Aligned_cols=99 Identities=25% Similarity=0.311 Sum_probs=63.2
Q ss_pred ccccccccceeeeccccCCCCCCceecccccccccCCC----C--------CCCCceEEeeeccCCcchhhhhhhhhhh-
Q 042358 20 SPLTSSLSSLSFSSQISQKPGIPFVSLHRSKSISISPK----N--------DKTPKLVVSATEAAPAELETTDLKKYVK- 86 (193)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~~~~~~~~e~~~l~~~v~- 86 (193)
.+|+++|.--+|+||+..|.|.|-+...-+..+-+.|- | ..--++++|-....+-|.|..-..+|.+
T Consensus 14 ~tL~aAlCL~nF~Sq~vErhnkPEVE~~~s~elLl~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~rF 93 (168)
T 1k8k_F 14 ATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRF 93 (168)
T ss_dssp HHHHHHCCCCCCCCSSSTTCCCCHHHHCCCGGGBCCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHhhcCCCceeecCCHHHhccceEEEecCCceEEEEcccceEEEEEEEcccChHHHHHHHHHHHH
Confidence 46778888889999999999999877754444433221 2 2345678888876666888876666554
Q ss_pred --ccCCCCccceeEEEEceecceEEEEEEEccce-EEEEcCcccccccc
Q 042358 87 --SRLPGGFAAQTIFGTGRRKCAIARVVLQEGTG-KFIINYRDAKEYLQ 132 (193)
Q Consensus 87 --~r~~~~~~~~~~~~~GRRKtAiArV~L~pGsG-kI~INgkpl~eYF~ 132 (193)
+|- +... .=|||- .+|=. .+.|-+.-.++|+.
T Consensus 94 l~~RA---e~f~----ILRrkP-------v~GYDISFLItn~h~e~m~k 128 (168)
T 1k8k_F 94 MMMRA---ENFF----ILRRKP-------VEGYDISFLITNFHTEQMYK 128 (168)
T ss_dssp HHHTT---TTST----TBCSSC-------CTTCSEEEEEEHHHHHHSCH
T ss_pred HHhcc---cceE----EeeeCC-------cCCccchhhhhhhhHHHHHH
Confidence 664 3322 346662 12322 57777776777764
No 25
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=23.52 E-value=32 Score=28.17 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=21.2
Q ss_pred ccceEEEEecCChhhHHHHHHHHHHHH
Q 042358 153 SYDVFVKAHGGGLSGQAQAITLGVARA 179 (193)
Q Consensus 153 kyDI~i~VkGGG~sGQA~AIRlAIARA 179 (193)
..|.+|.|=|||+.|-+-|+.++-+|+
T Consensus 63 ~~~~DV~IIGaGPAGlsAA~~la~~r~ 89 (326)
T 3fpz_A 63 FAVSDVIIVGAGSSGLSAAYVIAKNRP 89 (326)
T ss_dssp TTEESEEEECCSHHHHHHHHHHHHHCT
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHhCC
Confidence 345556777999999999999987653
No 26
>1uzv_A Pseudomonas aeruginosa lectin II; fucose, calcium; HET: FUC; 1.0A {Pseudomonas aeruginosa} SCOP: b.115.1.1 PDB: 1our_A 1oux_A 1ovp_A* 1ovs_A* 1oxc_A* 1ous_A* 2boj_A* 2bp6_A* 2vuc_A* 2vud_A* 3dcq_A* 1w8f_A* 1gzt_A* 1w8h_A* 2jdh_A* 2jdk_A* 2jdp_A* 2jdn_A* 2jdm_A* 2jdu_A* ...
Probab=22.83 E-value=56 Score=25.25 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=31.5
Q ss_pred hhhhhhhhhhccCCCCccceeEEEEceecceEEEEEEEccc-eEEE----EcCcccc
Q 042358 77 ETTDLKKYVKSRLPGGFAAQTIFGTGRRKCAIARVVLQEGT-GKFI----INYRDAK 128 (193)
Q Consensus 77 e~~~l~~~v~~r~~~~~~~~~~~~~GRRKtAiArV~L~pGs-GkI~----INgkpl~ 128 (193)
++|.++-|+..... ....+.|-+-.-.+.-.+..|+ |+|. .||||-.
T Consensus 24 ~~Qti~vyIdd~~~-----aT~~g~gt~d~~~gt~~l~Sg~~GkVriev~~nGKps~ 75 (114)
T 1uzv_A 24 GTQTVNVLVNNETA-----ATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSD 75 (114)
T ss_dssp EEEEEEEEETTEEE-----EEEEEEEEEEEEEEEEEEECTTTCEEEEEEEETTEECE
T ss_pred CceeEEEEECCeec-----ceeeccCCCCCccceEEEecCCCceEEEEEEeCCcccc
Confidence 56788888887431 2334666555556667788899 8754 5999765
No 27
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=22.46 E-value=62 Score=28.38 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=16.9
Q ss_pred ccceEEEEecCChhhHHHHHHHHH
Q 042358 153 SYDVFVKAHGGGLSGQAQAITLGV 176 (193)
Q Consensus 153 kyDI~i~VkGGG~sGQA~AIRlAI 176 (193)
.||| .|-|||+.|-+-|+.++=
T Consensus 79 ~~DV--vIVGgG~AGL~aA~~La~ 100 (344)
T 3jsk_A 79 ETDI--VIVGAGSCGLSAAYVLST 100 (344)
T ss_dssp BCSE--EEECCSHHHHHHHHHHHH
T ss_pred cCCE--EEECccHHHHHHHHHHHh
Confidence 4554 566999999999987753
No 28
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=21.69 E-value=50 Score=30.18 Aligned_cols=21 Identities=33% Similarity=0.246 Sum_probs=15.9
Q ss_pred eEEEEecCChhhHHHHHHHHH
Q 042358 156 VFVKAHGGGLSGQAQAITLGV 176 (193)
Q Consensus 156 I~i~VkGGG~sGQA~AIRlAI 176 (193)
.+|.|-|||++|-+-|+.++-
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~ 70 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRA 70 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHH
Confidence 445667999999998887753
Done!