RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 042358
         (193 letters)



>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
           thermophilus [TaxId: 274]}
          Length = 127

 Score = 87.3 bits (216), Expect = 3e-23
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 99  FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFV 158
           +GTGRRK A+ARV L+ G GK  +N +D  EY QG    +  ++ PL  +     +D ++
Sbjct: 4   YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALE-PLRAVDALGRFDAYI 62

Query: 159 KAHGGGLSGQAQAITLGVARALLKF 183
              GGG SGQ  AI LG+ARAL+++
Sbjct: 63  TVRGGGKSGQIDAIKLGIARALVQY 87


>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score = 84.5 bits (209), Expect = 5e-22
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 99  FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFV 158
           +GTGRRK + ARV ++ G GK +IN R  ++Y       +  ++ PL  +      D+++
Sbjct: 3   YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMV-VRQPLELVDMVEKLDLYI 61

Query: 159 KAHGGGLSGQAQAITLGVARALLKF 183
              GGG+SGQA AI  G+ RAL+++
Sbjct: 62  TVKGGGISGQAGAIRHGITRALMEY 86


>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
           [TaxId: 56]}
          Length = 401

 Score = 29.0 bits (63), Expect = 0.40
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 99  FGTGRRKC---AIARVVLQEGTGKFIINYRDAKEYLQGNPLW 137
           +G G   C   ++AR+  +   G     + + K  L+  P++
Sbjct: 343 YGRGPHVCPGVSLARLEAEIAVGTIFRRFPEMK--LKETPVF 382


>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
           [TaxId: 2287]}
          Length = 366

 Score = 27.9 bits (60), Expect = 0.88
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 99  FGTGRRKC---AIARVVLQEGTGKFIINYRD 126
           FG+G   C    +AR+  +    +F   +R 
Sbjct: 310 FGSGIHLCLGAPLARLEARIAIEEFSKRFRH 340


>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
           {Thermus thermophilus, AspRS-2 [TaxId: 274]}
          Length = 304

 Score = 27.4 bits (60), Expect = 1.0
 Identities = 11/51 (21%), Positives = 16/51 (31%)

Query: 61  TPKLVVSATEAAPAELETTDLKKYVKSRLPGGFAAQTIFGTGRRKCAIARV 111
           TPK+V +  E           +K            Q + G   R   +A V
Sbjct: 39  TPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPV 89


>d1qi9a_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase)
           {Ascophyllum nodosum [TaxId: 52969]}
          Length = 555

 Score = 25.6 bits (56), Expect = 4.4
 Identities = 11/66 (16%), Positives = 24/66 (36%)

Query: 115 EGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITL 174
           +   +F+ N RD       + +  +  +  L+ LG +      V      +  QA  +  
Sbjct: 258 DDELRFVRNARDLARVTFTDNINTEAYRGALILLGLDAFNRAGVNGPFIDIDRQAGFVNF 317

Query: 175 GVARAL 180
           G++   
Sbjct: 318 GISHYF 323


>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 167

 Score = 24.7 bits (54), Expect = 6.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 22 LTSSLSSLSFSSQISQKPGIPFVSLHRSKSISISP 56
          L ++L   +FSSQ+ ++   P V +  SK + + P
Sbjct: 15 LQAALCLENFSSQVVERHNKPEVEVRSSKELLLQP 49


>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 161

 Score = 24.4 bits (53), Expect = 7.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 41 IPFVSLHRSKSISISPKNDKTPKLV 65
          IPF  + +  S +I    ++ PK V
Sbjct: 64 IPFNQVIKLHSFAIKGPEEEGPKTV 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 654,160
Number of extensions: 28173
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 9
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)