BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042359
(979 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 230/877 (26%), Positives = 359/877 (40%), Gaps = 156/877 (17%)
Query: 44 EKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRN-PFNYHKESE 102
E L+SFK L D N L WS N + C + GV C + V +DL + P N
Sbjct: 10 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLN------ 60
Query: 103 YEAIRRTALVGKINPXXXXXXXXXXXXXXFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG 162
+ +A+ + G F +L L+LSR + G
Sbjct: 61 ---VGFSAVSSSLLSLTGLESLFLSNSHINGSVSG------FKCSASLTSLDLSRNSLSG 111
Query: 163 MIPH--HLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDL--RSVNLSKAFDWLMV 218
+ LG+ S L+FL++SSN L + L+ LE LDL S++ + W++
Sbjct: 112 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL- 170
Query: 219 TNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN 278
+ L L +S N+ + G + +
Sbjct: 171 ------------------------SDGCGELKHLAISGNK---------ISGDV--DVSR 195
Query: 279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSL 338
+L L + SN+F++ IP +L L++L +S N L G S A+ T + L++S
Sbjct: 196 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISS 253
Query: 339 NMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGH 398
N + G IP LKSL + ++ EI D SG + L LDL + YG
Sbjct: 254 NQFV-GPIPP-----LPLKSLQYLSLAENKFTGEIPDFLSGAC-DTLTGLDLSGNHFYGA 306
Query: 399 LTDQLGQFKNIVTLDFANNSIVGLIP-ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTK 457
+ G + +L ++N+ G +P ++L ++ L+VL ++ N+ +G L +LT
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE----SLTN 362
Query: 458 LSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKH-LQFLYLVNSSI 516
LS + LTL + N + G P + K+ LQ LYL N+
Sbjct: 363 LS-----ASLLTLDLS--------------SNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 517 SDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLISSNL 575
+ P L + S+L L L N + G IP+ L + L L ++ N + G +P L
Sbjct: 404 TGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP---QEL 459
Query: 576 VFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNN 635
+++ K+L L L+ N L GE+P + NL + LSNN
Sbjct: 460 MYV----------------------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 636 KFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGE 695
+ TG +P +G L +L L L N SGNI L +C +L LD+ N F G IP +
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-- 555
Query: 696 RFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT 755
F Q IA N ++G I N GM C
Sbjct: 556 ---------------------------FKQSGKIAANFIAGKRYVYIKN-DGMKKECHGA 587
Query: 756 RSVQQYLPLPIDVGVILVEK-----ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 810
++ ++ + + L + S V G D + +D+S N SG IP
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 811 EVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMXXXXXXXXXX 870
E+ ++ L LN +N +G IP+ +G +R L +D S+N+L G IP++M
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 871 XXXXXXTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPK 906
+G IP Q ++F + F N LCG PLP+
Sbjct: 708 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 232/878 (26%), Positives = 361/878 (41%), Gaps = 158/878 (17%)
Query: 44 EKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRN-PFNYHKESE 102
E L+SFK L D N L WS N + C + GV C + V +DL + P N
Sbjct: 13 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLN------ 63
Query: 103 YEAIRRTALVGKINPXXXXXXXXXXXXXXFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG 162
+ +A+ + G F +L L+LSR + G
Sbjct: 64 ---VGFSAVSSSLLSLTGLESLFLSNSHINGSVSG------FKCSASLTSLDLSRNSLSG 114
Query: 163 MIPH--HLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDL--RSVNLSKAFDWLMV 218
+ LG+ S L+FL++SSN L + L+ LE LDL S++ + W++
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174
Query: 219 TNKLPSLVELRLANC-QLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ 277
C +L H L +S N+ + G + +
Sbjct: 175 DG------------CGELKH--------------LAISGNK---------ISGDV--DVS 197
Query: 278 NLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLS 337
+L L + SN+F++ IP +L L++L +S N L G S A+ T + L++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNIS 255
Query: 338 LNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYG 397
N + G IP LKSL + ++ EI D SG + L LDL + YG
Sbjct: 256 SNQFV-GPIPP-----LPLKSLQYLSLAENKFTGEIPDFLSGAC-DTLTGLDLSGNHFYG 308
Query: 398 HLTDQLGQFKNIVTLDFANNSIVGLIP-ESLGQLSTLRVLRINDNKLNGTLSAIHFANLT 456
+ G + +L ++N+ G +P ++L ++ L+VL ++ N+ +G L +LT
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE----SLT 364
Query: 457 KLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKH-LQFLYLVNSS 515
LS + LTL + N + G P + K+ LQ LYL N+
Sbjct: 365 NLS-----ASLLTLDLS--------------SNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 516 ISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLISSN 574
+ P L + S+L L L N + G IP+ L + L L ++ N + G +P
Sbjct: 406 FTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP---QE 461
Query: 575 LVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSN 634
L+++ K+L L L+ N L GE+P + NL + LSN
Sbjct: 462 LMYV----------------------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 635 NKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG 694
N+ TG +P +G L +L L L N SGNI L +C +L LD+ N F G IP +
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM- 558
Query: 695 ERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSF 754
F Q IA N ++G I N GM C
Sbjct: 559 ----------------------------FKQSGKIAANFIAGKRYVYIKN-DGMKKECHG 589
Query: 755 TRSVQQYLPLPIDVGVILVEK-----ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 809
++ ++ + + L + S V G D + +D+S N SG IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 810 LEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMXXXXXXXXX 869
E+ ++ L LN +N +G IP+ +G +R L +D S+N+L G IP++M
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 870 XXXXXXXTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPK 906
+G IP Q ++F + F N LCG PLP+
Sbjct: 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 16/228 (7%)
Query: 521 PIRFLKSASQLKFLDL----GQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLISSN- 574
P S + L +L+ G N + GPIP + + T L L + N+SG +P S
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 575 --LVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKT-LK 631
LV LD S N SG++ P I+ +L + + N ++G +PD + S+ L T +
Sbjct: 125 KTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 632 LSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPT 691
+S N+ TG +P + +L +L ++ L N L G+ V + + + + +N ++
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238
Query: 692 WIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP 739
+G + L LR+N+ +G LP GL L FL L+++ NNL G IP
Sbjct: 239 KVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 708 NKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLP---- 763
N GP+P + L L L I N+SGAIP+ ++ + +VT ++ LP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 764 -LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNL------- 815
LP VG+ + +S Y L + ISRN +GKIP NL
Sbjct: 147 SLPNLVGITF--DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 816 ----------------KALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES 859
K Q ++ + NS + + +G+ ++L +D N++ G +P+
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 860 MXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGND-LCGAPLPKNCT 909
+ G+IP LQ FDVS++A N LCG+PLP CT
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-CT 313
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 22/259 (8%)
Query: 331 ISWLDLS-LNMGIEGRIPRSMASLCNLKSLNLRGVH-LSQEISEILDIFSGCVSNGLESL 388
++ LDLS LN+ IP S+A+L L L + G++ L I + + L L
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-----LHYL 106
Query: 389 DLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLS 448
+ ++ G + D L Q K +VTLDF+ N++ G +P S+ L L + + N+++G +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 449 AIHFANLTKL-SWFRVDGNKLTLGVKHDWIPP----FQLVALGLRNCYVGSRFPLWLYSQ 503
+ + +KL + + N+LT IPP L + L + + S
Sbjct: 167 D-SYGSFSKLFTSMTISRNRLT-----GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220
Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSN 562
K+ Q ++L +S++ F + + + L LDL N+I+G +P LT+ L L+V N
Sbjct: 221 KNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 563 NMSGPLPLISSNLVFLDLS 581
N+ G +P NL D+S
Sbjct: 279 NLCGEIPQ-GGNLQRFDVS 296
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 47/218 (21%)
Query: 268 VFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS--EAL 325
+ GPIP + LT L +L + + + +IP++L + L L S N+L GT+ +L
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 326 GNLTSISW----------------------LDLSLNMGIEGRIPRSMASLCNLKSLNL-- 361
NL I++ + +S N + G+IP + A+L NL ++L
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANL-NLAFVDLSR 206
Query: 362 -----------------RGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLG 404
+ +HL++ S D+ +S L LDLR++ IYG L L
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 405 QFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNK 442
Q K + +L+ + N++ G IP+ G L V +NK
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 120/298 (40%), Gaps = 33/298 (11%)
Query: 40 CLGSEKEALLSFKRDLKDPSNRLASWSGNGDCC--AWAGVFCDNITG--HVLHLDLRNPF 95
C +K+ALL K+DL +P+ L+SW DCC W GV CD T V +LDL
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-L 60
Query: 96 NYHKESEYEAIRRTALVGKINPXXXXXXXXXXXXXXFNDFQGIQIPRFFGSMGNLRYLNL 155
N K Y A + +N N+ G IP + L YL +
Sbjct: 61 NLPK--PYPIPSSLANLPYLN---------FLYIGGINNLVG-PIPPAIAKLTQLHYLYI 108
Query: 156 SRTRIGGMIPHHLGNLSNLQFLDLSSNYL-----LYVDNFWWLSGLSFLEHLDLRSV--- 207
+ T + G IP L + L LD S N L + + L G++F + ++
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 208 --NLSKAFDWLMVT-NKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFI 264
+ SK F + ++ N+L + AN L L +VL SD K +
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 265 P--SWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTI 320
S F GL +L L L +N ++P L + L L++S N+L G I
Sbjct: 229 AKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 156/336 (46%), Gaps = 46/336 (13%)
Query: 222 LPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281
L LV++ + N Q+ + LA N ++LT L L +NQ P L+NLT+
Sbjct: 84 LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD-------IDP----LKNLTN 130
Query: 282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG 341
L L L SN S + L L+ L+ S+N + D + L NLT++ LD+S N
Sbjct: 131 LNRLELSSNTI--SDISALSGLTSLQQLNFSSNQV---TDLKPLANLTTLERLDISSNKV 185
Query: 342 IEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTD 401
+ + +A L NL+SL + + +IS+I + G ++N L+ L L + + T
Sbjct: 186 SDISV---LAKLTNLESL----IATNNQISDITPL--GILTN-LDELSLNGNQLKDIGT- 234
Query: 402 QLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF 461
L N+ LD ANN I L P L L+ L L++ N+++ + A LT L+
Sbjct: 235 -LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS---NISPLAGLTALTNL 288
Query: 462 RVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLW-LYSQKHLQFLYLVNSSISDIF 520
++ N+L D P L L Y + + + S LQ L+ N+ +SD
Sbjct: 289 ELNENQL-----EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD-- 341
Query: 521 PIRFLKSASQLKFLDLGQNQIHG--PIPNLTEFTGL 554
+ L + + + +L G NQI P+ NLT T L
Sbjct: 342 -VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 162/411 (39%), Gaps = 96/411 (23%)
Query: 390 LRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
L++D + D + N+ ++F+NN + + P L L+ L + +N+N++
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL 103
Query: 450 IHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFL 509
+ NLT L+ F N++T D P L+N +L L
Sbjct: 104 ANLTNLTGLTLFN---NQIT-----DIDP--------LKNL-------------TNLNRL 134
Query: 510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP 569
L +++ISDI + L S QL F NQ+ P L T L L + SN +S
Sbjct: 135 ELSSNTISDISALSGLTSLQQLNF---SSNQVTDLKP-LANLTTLERLDISSNKVSDISV 190
Query: 570 LIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
L +NL L +NN S I+P + SLN QL D S NL
Sbjct: 191 LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKD-------IGTLASLTNLT 242
Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
L L+NN+ + P S LT L L LG N++S + L TAL +L++ EN+
Sbjct: 243 DLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI 298
Query: 689 IP-------TWIGERF------------SRMVVLILRSNKF------------------H 711
P T++ F +++ L +NK H
Sbjct: 299 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH 358
Query: 712 GPLP--TGLCDLAFLQILDIADNNLSGA---------IPNCINNLTGMVTA 751
+ T L +L + L + D + A IPN + N+TG + A
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 409
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 138/326 (42%), Gaps = 66/326 (20%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
++ NL L L +I + P L NL+NL L+LSSN + + LSGL+ L+ L+
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN---TISDISALSGLTSLQQLN 157
Query: 204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
S N++ L L AN ++L LD+S N+
Sbjct: 158 FSS-------------NQVTDLKPL---------------ANLTTLERLDISSNKVSDIS 189
Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE 323
+ L LT+L L +N + P L +L+ LSL+ N L+ D
Sbjct: 190 V-----------LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK---DIG 233
Query: 324 ALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSN 383
L +LT+++ LDL+ N I P ++ L L L L +S + +G
Sbjct: 234 TLASLTNLTDLDLA-NNQISNLAP--LSGLTKLTELKLGANQISN-----ISPLAGLT-- 283
Query: 384 GLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL 443
L +L+L + + + KN+ L N+I + P S L+ L+ L +NK+
Sbjct: 284 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKV 339
Query: 444 NGTLSAIHFANLTKLSWFRVDGNKLT 469
+ S ANLT ++W N+++
Sbjct: 340 SDVSS---LANLTNINWLSAGHNQIS 362
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 28/236 (11%)
Query: 455 LTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPL---WLYSQKHLQFLYL 511
LT L + ++GN++T D P LV L N Y+G+ L + +L+ LYL
Sbjct: 65 LTNLEYLNLNGNQIT-----DISPLSNLVKL--TNLYIGTNKITDISALQNLTNLRELYL 117
Query: 512 VNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLI 571
+ISDI P+ L ++ L+LG N + L+ TGL L+V + + P+
Sbjct: 118 NEDNISDISPLANL---TKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPI- 173
Query: 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW--MSYQNLKT 629
+NL +L+S S++ I+ SL +L Y+N ++ D + L +
Sbjct: 174 -ANLT------DLYSLSLNYNQIEDISPLASLTSLHYFTAYVN-QITDITPVANXTRLNS 225
Query: 630 LKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
LK+ NNK T P + +L+ L WL +G N++S + ++K+ T L+ L+VG N+
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQI 277
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 37/192 (19%)
Query: 452 FANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLW-LYSQKHLQFLY 510
ANLT L ++ N++ D P L +L YV + + + L L
Sbjct: 173 IANLTDLYSLSLNYNQI-----EDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLK 227
Query: 511 LVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPL 570
+ N+ I+D+ P+ L SQL +L++G NQI I + + T L L+V SN +S
Sbjct: 228 IGNNKITDLSPLANL---SQLTWLEIGTNQISD-INAVKDLTKLKXLNVGSNQIS----- 278
Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630
D+S +N LN+L LN+N L E + NL TL
Sbjct: 279 --------DIS--------------VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
Query: 631 KLSNNKFTGNLP 642
LS N T P
Sbjct: 317 FLSQNHITDIRP 328
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 49/295 (16%)
Query: 274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISW 333
+G++ LT+L +L L+ N P L + L L + N + D AL NLT++
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI---TDISALQNLTNLRE 114
Query: 334 LDL------------------SLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQ-----EI 370
L L SLN+G + ++ L N LN V S+ I
Sbjct: 115 LYLNEDNISDISPLANLTKXYSLNLGANHNL-SDLSPLSNXTGLNYLTVTESKVKDVTPI 173
Query: 371 SEILDIFSGCVS-NGLESLD-LRSDSIYGHLTDQLGQFKNIV---------TLDFANNSI 419
+ + D++S ++ N +E + L S + + T + Q +I +L NN I
Sbjct: 174 ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKI 233
Query: 420 VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT-LGVKHDWIP 478
L P L LS L L I N+++ ++A+ +LTKL V N+++ + V ++
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISD-INAVK--DLTKLKXLNVGSNQISDISVLNNL-- 286
Query: 479 PFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKF 533
QL +L L N +G+ + +L L+L + I+DI P+ L F
Sbjct: 287 -SQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLASLSKXDSADF 340
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 131/537 (24%), Positives = 211/537 (39%), Gaps = 91/537 (16%)
Query: 319 TIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFS 378
TID EA NL ++ LDL + I P + L +L L L LS + +
Sbjct: 63 TIDKEAFRNLPNLRILDLG-SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-----D 116
Query: 379 GCVSN--GLESLDLRSDSIYG-HLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLS--TL 433
G N L LDL + I +L G+ ++ ++DF++N I + L L TL
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176
Query: 434 RVLRINDNKLNGTLSAI------HFANLTKLSWFRVDGNKLTLGVKHDW---IPPFQLVA 484
+ N L +S F N+ L V GN T+ + ++ I Q +
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 485 LGLRNCYVGSRFPLW-LYSQKHLQFLYLVNSSISD-------IFPI--RFLKSASQLKFL 534
L L + +G+ F + F L SS+ +F + R ++ LK L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 535 DLGQNQIHGPIPNLTEFTGL-----------LILSVYSNNMSGPLPLISSNLVFLDLSNN 583
+L N+I+ F GL L+ +YS+N G LP ++ ++DL N
Sbjct: 296 NLAYNKINKIADE--AFYGLDNLQVLNLSYNLLGELYSSNFYG-LPKVA----YIDLQKN 348
Query: 584 ---LFSGSISPFLCYRINETKSLNALQLNDNYLNG-----ELPDCWMSYQNLKTLKLSNN 635
+ FL + L L L DN L +PD ++S L TL N
Sbjct: 349 HIAIIQDQTFKFL-------EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN- 400
Query: 636 KFTGNLPYSMGSLTSLVWLHLGENRLSG-NILVSLKNCTALESLDVGENEFVGNIPTWIG 694
T NL +HL ENRL +IL L L+ L + +N F
Sbjct: 401 -LTANL------------IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 695 ERFSRMVVLILRSNKFHGPLPTGLC-----DLAFLQILDIADNNLSGAIPNCINNLTGM- 748
+ L L N T LC L+ LQ+L + N L+ P ++LT +
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 749 -VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
++ S +V + LP ++ ++ + + +++ D+ + ++DI+ N F
Sbjct: 508 GLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN-----PDVFVSLSVLDITHNKF 559
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 142/564 (25%), Positives = 225/564 (39%), Gaps = 98/564 (17%)
Query: 170 NLSNLQFLDLSSN--YLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVE 227
NL NL+ LDL S+ Y L+ D F GL L L L LS A L +L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAF---QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 228 LRLANCQLHHFSLLAT-ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL--TSLRH 284
L L+ Q+ L + +SL +D S NQ +F L+ L +L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ---------IFLVCEHELEPLQGKTLSF 178
Query: 285 LGLDSNHFNSSIP-NW-----LYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSL 338
L +N S + +W +R + LE L +S N T+D GN ++ +
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG--WTVD--ITGNFSNAISKSQAF 234
Query: 339 NMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGH 398
++ + I + N+K + + F+G + + LDL ++
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQ-------------NTFAGLARSSVRHLDLSHGFVFSL 281
Query: 399 LTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKL 458
+ K++ L+ A N I + E+ L L+VL ++ N L G L + +F L K+
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKV 340
Query: 459 SWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD 518
++ + N + + + +L L LR+ + + + F+ SI D
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----------IHFI----PSIPD 385
Query: 519 IFPIRFLKSASQLKFL---DLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNL 575
IF S ++L L +L N IH L L L L +L
Sbjct: 386 IF-----LSGNKLVTLPKINLTANLIHLSENRLENLDILYFL------------LRVPHL 428
Query: 576 VFLDLSNNLF---SGSISPFLCYRINETKSLNALQLNDNYLN--GELPDCWMSYQ---NL 627
L L+ N F SG +P +E SL L L +N L E CW ++ +L
Sbjct: 429 QILILNQNRFSSCSGDQTP------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482
Query: 628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTA-LESLDVGENEFV 686
+ L L++N P LT+L L L NRL+ ++S + A LE LD+ N+ +
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQLL 539
Query: 687 GNIPTWIGERFSRMVVLILRSNKF 710
P + F + VL + NKF
Sbjct: 540 APNP----DVFVSLSVLDITHNKF 559
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 142 RFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL--LYVDNFWWLSGLSFL 199
R F ++ +L+ LNL+ +I + L NLQ L+LS N L LY NF+ L ++++
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 200 E 200
+
Sbjct: 344 D 344
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 814 NLKALQSLNFSYNSFTG-RIPESIGVMRSLESIDFSANQL 852
NLKAL L+ S N + S G + SL+SIDFS+NQ+
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
+ NL L + +I + P LG L+NL L L+ N L + L+ L+ L L
Sbjct: 190 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 244
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
DL + +S L + L L EL+L Q+ + S LA ++LT L+L++NQ +
Sbjct: 245 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 297
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
PI NL +L +L L N+ + P + L+ L SNN + D
Sbjct: 298 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS---DV 342
Query: 323 EALGNLTSISWL 334
+L NLT+I+WL
Sbjct: 343 SSLANLTNINWL 354
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 162/411 (39%), Gaps = 96/411 (23%)
Query: 390 LRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
L++D + D + N+ ++F+NN + + P L L+ L + +N+N++
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL 103
Query: 450 IHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFL 509
+ NLT L+ F N++T D P L+N +L L
Sbjct: 104 ANLTNLTGLTLFN---NQIT-----DIDP--------LKNL-------------TNLNRL 134
Query: 510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP 569
L +++ISDI + L S QL F NQ+ P L T L L + SN +S
Sbjct: 135 ELSSNTISDISALSGLTSLQQLSF---SSNQVTDLKP-LANLTTLERLDISSNKVSDISV 190
Query: 570 LIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
L +NL L +NN S I+P + SLN QL D S NL
Sbjct: 191 LAKLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQLKD-------IGTLASLTNLT 242
Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
L L+NN+ + P S LT L L LG N++S + L TAL +L++ EN+
Sbjct: 243 DLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI 298
Query: 689 IP-------TWIGERF------------SRMVVLILRSNKF------------------H 711
P T++ F +++ L +NK H
Sbjct: 299 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGH 358
Query: 712 GPLP--TGLCDLAFLQILDIADNNLSGA---------IPNCINNLTGMVTA 751
+ T L +L + L + D + A IPN + N+TG + A
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 409
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 138/326 (42%), Gaps = 66/326 (20%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
++ NL L L +I + P L NL+NL L+LSSN + + LSGL+ L+ L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN---TISDISALSGLTSLQQLS 157
Query: 204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
S N++ L L AN ++L LD+S N+
Sbjct: 158 FSS-------------NQVTDLKPL---------------ANLTTLERLDISSNKVSDIS 189
Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE 323
+ L LT+L L +N + P L +L+ LSL+ N L+ D
Sbjct: 190 V-----------LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK---DIG 233
Query: 324 ALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSN 383
L +LT+++ LDL+ N I P ++ L L L L +S + +G
Sbjct: 234 TLASLTNLTDLDLA-NNQISNLAP--LSGLTKLTELKLGANQISN-----ISPLAGLT-- 283
Query: 384 GLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL 443
L +L+L + + + KN+ L N+I + P S L+ L+ L ++NK+
Sbjct: 284 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKV 339
Query: 444 NGTLSAIHFANLTKLSWFRVDGNKLT 469
+ S ANLT ++W N+++
Sbjct: 340 SDVSS---LANLTNINWLSAGHNQIS 362
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
+ NL L + +I + P LG L+NL L L+ N L + L+ L+ L L
Sbjct: 189 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 243
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
DL + +S L + L L EL+L Q+ + S LA ++LT L+L++NQ +
Sbjct: 244 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 296
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
PI NL +L +L L N+ + P + L+ L SNN + D
Sbjct: 297 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS---DV 341
Query: 323 EALGNLTSISWL 334
+L NLT+I+WL
Sbjct: 342 SSLANLTNINWL 353
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 162/411 (39%), Gaps = 97/411 (23%)
Query: 390 LRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
L++D + D + N+ ++F+NN + + P L L+ L + +N+N++
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL 103
Query: 450 IHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFL 509
+ NLT L+ F N++T D P L+N +L L
Sbjct: 104 ANLTNLTGLTLFN---NQIT-----DIDP--------LKNL-------------TNLNRL 134
Query: 510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP 569
L +++ISDI + L S QL F NQ+ P L T L L + SN +S
Sbjct: 135 ELSSNTISDISALSGLTSLQQLNF----GNQVTDLKP-LANLTTLERLDISSNKVSDISV 189
Query: 570 LIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
L +NL L +NN S I+P + SLN QL D S NL
Sbjct: 190 LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKD-------IGTLASLTNLT 241
Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
L L+NN+ + P S LT L L LG N++S + L TAL +L++ EN+
Sbjct: 242 DLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI 297
Query: 689 IP-------TWIGERF------------SRMVVLILRSNKF------------------H 711
P T++ F +++ L +NK H
Sbjct: 298 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGH 357
Query: 712 GPLP--TGLCDLAFLQILDIADNNLSGA---------IPNCINNLTGMVTA 751
+ T L +L + L + D + A IPN + N+TG + A
Sbjct: 358 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 408
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 95/232 (40%), Gaps = 56/232 (24%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLL------------------ 185
++ NL L L +I + P L NL+NL L+LSSN +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 186 YVDNFWWLSGLSFLEHLDLRSVNLSKA--------FDWLMVTNK----------LPSLVE 227
V + L+ L+ LE LD+ S +S + L+ TN L +L E
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
L L QL LA+ ++LT LDL++NQ P L LT L L L
Sbjct: 221 LSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN-------LAP----LSGLTKLTELKL 267
Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
+N ++ P L L L L+ N L+ D + NL ++++L L N
Sbjct: 268 GANQISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFN 314
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
+ NL L + +I + P LG L+NL L L+ N L + L+ L+ L L
Sbjct: 193 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 247
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
DL + +S L + L L EL+L Q+ + S LA ++LT L+L++NQ +
Sbjct: 248 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 300
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
PI NL +L +L L N+ + P + L+ L +NN + D
Sbjct: 301 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS---DV 345
Query: 323 EALGNLTSISWL 334
+L NLT+I+WL
Sbjct: 346 SSLANLTNINWL 357
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 144/351 (41%), Gaps = 47/351 (13%)
Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFR 462
L N+ L NN I + P L L+ L L ++ N ++ + +L +LS+
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-- 162
Query: 463 VDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQ-KHLQFLYLVNSSISDIFP 521
GN++T D P L L + + + ++ +L+ L N+ ISDI P
Sbjct: 163 --GNQVT-----DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 215
Query: 522 IRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDL 580
+ L + L L L NQ+ I L T L L + +N +S PL + L L L
Sbjct: 216 LGIL---TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
Query: 581 SNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN 640
N S +ISP +L L+LN+N L P + +NL L L N +
Sbjct: 272 GANQIS-NISPLAGLT-----ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 323
Query: 641 LPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRM 700
P S SLT L L N++S + SL N T + L G N+ P R +++
Sbjct: 324 SPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 379
Query: 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTA 751
GL D A+ N+S IPN + N+TG + A
Sbjct: 380 ----------------GLNDQAWTNAPVNYKANVS--IPNTVKNVTGALIA 412
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 95/232 (40%), Gaps = 56/232 (24%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLL------------------ 185
++ NL L L +I + P L NL+NL L+LSSN +
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 164
Query: 186 YVDNFWWLSGLSFLEHLDLRSVNLSKA--------FDWLMVTNK----------LPSLVE 227
V + L+ L+ LE LD+ S +S + L+ TN L +L E
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 224
Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
L L QL LA+ ++LT LDL++NQ P L LT L L L
Sbjct: 225 LSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN-------LAP----LSGLTKLTELKL 271
Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
+N ++ P L L L L+ N L+ D + NL ++++L L N
Sbjct: 272 GANQISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFN 318
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 26/230 (11%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
F + NL L++S +I ++ + +L NL+ L++ N L+Y+ + + SGL+ LE L
Sbjct: 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLT 158
Query: 204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
L NL+ + + L L+ LRL + ++ + L VL++S +
Sbjct: 159 LEKCNLTSIPTEAL--SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216
Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFN-SSIPNWLYR-FIHLEYLSLSNNSLQGTID 321
P+ ++G NLTS L H N +++P R ++L +L+LS N + TI+
Sbjct: 217 TPNCLYG------LNLTS-----LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIE 264
Query: 322 SEALGNLTSISWLDLSLNMGIEGRI----PRSMASLCNLKSLNLRGVHLS 367
L L + + L + G++ P + L L+ LN+ G L+
Sbjct: 265 GSMLHELLRLQEIQL-----VGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 603 LNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS 662
L L+LN+N ++ P + + NL+TL L +N+ L++L L + EN++
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 663 GNILVSLKNCTALESLDVGENEFV-----------------------GNIPTWIGERFSR 699
+ ++ L+SL+VG+N+ V +IPT
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 700 MVVLILRSNKFHGPLPTGLCDLAFLQILDIAD-NNLSGAIPNCIN--NLTGM-VTACSFT 755
++VL LR + L L++L+I+ L PNC+ NLT + +T C+ T
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 102/265 (38%), Gaps = 33/265 (12%)
Query: 133 NDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF--LDLSSNYLLYVDNF 190
N+ + IQ FF +M L+L+ ++ + L N F L LSS L ++ +
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 191 W--WLSGLSFLEHLDLRSVNLS---------KAFDWLMVTNKLPSLVELRLAN--CQLHH 237
W W + ++ + +++LS K F + K+ SL+ N H
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 238 FSLLATANF-------SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSN 290
+ NF S + DLS S +F + + T L L L N
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLS---------KSKIFALLKSVFSHFTDLEQLTLAQN 309
Query: 291 HFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM 350
N N + HL L+LS N L G+IDS NL + LDLS N I +S
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNH-IRALGDQSF 367
Query: 351 ASLCNLKSLNLRGVHLSQEISEILD 375
L NLK L L L I D
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFD 392
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
+ NL L + +I + P LG L+NL L L+ N L + L+ L+ L L
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 248
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
DL + +S L + L L EL+L Q+ + S LA ++LT L+L++NQ +
Sbjct: 249 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 301
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
PI NL +L +L L N+ + P + L+ L NN + D
Sbjct: 302 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS---DV 346
Query: 323 EALGNLTSISWL 334
+L NLT+I+WL
Sbjct: 347 SSLANLTNINWL 358
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 144/351 (41%), Gaps = 47/351 (13%)
Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFR 462
L N+ L NN I + P L L+ L L ++ N ++ + +L +LS+
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-- 163
Query: 463 VDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQ-KHLQFLYLVNSSISDIFP 521
GN++T D P L L + + + ++ +L+ L N+ ISDI P
Sbjct: 164 --GNQVT-----DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 216
Query: 522 IRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDL 580
+ L + L L L NQ+ I L T L L + +N +S PL + L L L
Sbjct: 217 LGIL---TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
Query: 581 SNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN 640
N S +ISP +L L+LN+N L P + +NL L L N +
Sbjct: 273 GANQIS-NISPLAGLT-----ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324
Query: 641 LPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRM 700
P S SLT L L N++S + SL N T + L G N+ P R +++
Sbjct: 325 SPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380
Query: 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTA 751
GL D A+ N+S IPN + N+TG + A
Sbjct: 381 ----------------GLNDQAWTNAPVNYKANVS--IPNTVKNVTGALIA 413
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 95/232 (40%), Gaps = 56/232 (24%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLL------------------ 185
++ NL L L +I + P L NL+NL L+LSSN +
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165
Query: 186 YVDNFWWLSGLSFLEHLDLRSVNLSKA--------FDWLMVTNK----------LPSLVE 227
V + L+ L+ LE LD+ S +S + L+ TN L +L E
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 225
Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
L L QL LA+ ++LT LDL++NQ P L LT L L L
Sbjct: 226 LSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN-------LAP----LSGLTKLTELKL 272
Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
+N ++ P L L L L+ N L+ D + NL ++++L L N
Sbjct: 273 GANQISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFN 319
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
+ NL L + +I + P LG L+NL L L+ N L + L+ L+ L L
Sbjct: 189 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 243
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
DL + +S L + L L EL+L Q+ + S LA ++LT L+L++NQ +
Sbjct: 244 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 296
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
PI NL +L +L L N+ + P + L+ L NN + D
Sbjct: 297 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS---DV 341
Query: 323 EALGNLTSISWL 334
+L NLT+I+WL
Sbjct: 342 SSLANLTNINWL 353
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 162/411 (39%), Gaps = 97/411 (23%)
Query: 390 LRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
L++D + D + N+ ++F+NN + + P L L+ L + +N+N++
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL 103
Query: 450 IHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFL 509
+ NLT L+ F N++T D P L+N +L L
Sbjct: 104 ANLTNLTGLTLFN---NQIT-----DIDP--------LKNL-------------TNLNRL 134
Query: 510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP 569
L +++ISDI + L S QL F NQ+ P L T L L + SN +S
Sbjct: 135 ELSSNTISDISALSGLTSLQQLNF----GNQVTDLKP-LANLTTLERLDISSNKVSDISV 189
Query: 570 LIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
L +NL L +NN S I+P + SLN QL D S NL
Sbjct: 190 LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKD-------IGTLASLTNLT 241
Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
L L+NN+ + P S LT L L LG N++S + L TAL +L++ EN+
Sbjct: 242 DLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI 297
Query: 689 IP-------TWIGERF------------SRMVVLILRSNKF------------------H 711
P T++ F +++ L +NK H
Sbjct: 298 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH 357
Query: 712 GPLP--TGLCDLAFLQILDIADNNLSGA---------IPNCINNLTGMVTA 751
+ T L +L + L + D + A IPN + N+TG + A
Sbjct: 358 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 408
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 95/232 (40%), Gaps = 56/232 (24%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLL------------------ 185
++ NL L L +I + P L NL+NL L+LSSN +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 186 YVDNFWWLSGLSFLEHLDLRSVNLSKA--------FDWLMVTNK----------LPSLVE 227
V + L+ L+ LE LD+ S +S + L+ TN L +L E
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
L L QL LA+ ++LT LDL++NQ P L LT L L L
Sbjct: 221 LSLNGNQLKDIGTLAS--LTNLTDLDLANNQISN-------LAP----LSGLTKLTELKL 267
Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
+N ++ P L L L L+ N L+ D + NL ++++L L N
Sbjct: 268 GANQISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFN 314
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
+ NL L + +I + P LG L+NL L L+ N L + L+ L+ L L
Sbjct: 190 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 244
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
DL + +S L + L L EL+L Q+ + S LA ++LT L+L++NQ +
Sbjct: 245 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 297
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
PI NL +L +L L N+ + P + L+ L NN + D
Sbjct: 298 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS---DV 342
Query: 323 EALGNLTSISWL 334
+L NLT+I+WL
Sbjct: 343 SSLANLTNINWL 354
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 162/411 (39%), Gaps = 96/411 (23%)
Query: 390 LRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
L++D + D + N+ ++F+NN + + P L L+ L + +N+N++
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL 103
Query: 450 IHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFL 509
+ NLT L+ F N++T D P L+N +L L
Sbjct: 104 ANLTNLTGLTLFN---NQIT-----DIDP--------LKNL-------------TNLNRL 134
Query: 510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP 569
L +++ISDI + L S QL F NQ+ P L T L L + SN +S
Sbjct: 135 ELSSNTISDISALSGLTSLQQLSF---SSNQVTDLKP-LANLTTLERLDISSNKVSDISV 190
Query: 570 LIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
L +NL L +NN S I+P + SLN QL D S NL
Sbjct: 191 LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKD-------IGTLASLTNLT 242
Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
L L+NN+ + P S LT L L LG N++S + L TAL +L++ EN+
Sbjct: 243 DLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI 298
Query: 689 IP-------TWIGERF------------SRMVVLILRSNKF------------------H 711
P T++ F +++ L +NK H
Sbjct: 299 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH 358
Query: 712 GPLP--TGLCDLAFLQILDIADNNLSGA---------IPNCINNLTGMVTA 751
+ T L +L + L + D + A IPN + N+TG + A
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 409
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 137/326 (42%), Gaps = 66/326 (20%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
++ NL L L +I + P L NL+NL L+LSSN + + LSGL+ L+ L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN---TISDISALSGLTSLQQLS 157
Query: 204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
S N++ L L AN ++L LD+S N+
Sbjct: 158 FSS-------------NQVTDLKPL---------------ANLTTLERLDISSNKVSDIS 189
Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE 323
+ L LT+L L +N + P L +L+ LSL+ N L+ D
Sbjct: 190 V-----------LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK---DIG 233
Query: 324 ALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSN 383
L +LT+++ LDL+ N I P ++ L L L L +S + +G
Sbjct: 234 TLASLTNLTDLDLA-NNQISNLAP--LSGLTKLTELKLGANQISN-----ISPLAGLT-- 283
Query: 384 GLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL 443
L +L+L + + + KN+ L N+I + P S L+ L+ L +NK+
Sbjct: 284 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKV 339
Query: 444 NGTLSAIHFANLTKLSWFRVDGNKLT 469
+ S ANLT ++W N+++
Sbjct: 340 SDVSS---LANLTNINWLSAGHNQIS 362
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 136 QGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSG 195
QGIQ + N+RYL L ++ + L L+NL +L L+ N L + N +
Sbjct: 57 QGIQY------LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF-DK 107
Query: 196 LSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLS 255
L+ L+ L L L D V +KL +L L LA+ QL ++LT LDLS
Sbjct: 108 LTNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 256 DNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFIHLEYLSLSNN 314
NQ +P VF LT L+ L L N S+P+ ++ R L+Y+ L +N
Sbjct: 166 YNQLQS--LPEGVF-------DKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 215
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 38/254 (14%)
Query: 502 SQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYS 561
+Q L + + ++ SDI ++ ++ +++L LG N++H I L E T L L +
Sbjct: 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTG 94
Query: 562 NNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPD-C 620
N + LP N VF L+N L L L +N L LPD
Sbjct: 95 NQLQS-LP----NGVFDKLTN--------------------LKELVLVENQLQS-LPDGV 128
Query: 621 WMSYQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679
+ NL L L++N+ +LP + LT+L L L N+L T L+ L
Sbjct: 129 FDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP 739
+ +N+ ++P + +R + + + L N + C ++ L N SG +
Sbjct: 188 LYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 239
Query: 740 NCINNLTGMVTACS 753
N ++ CS
Sbjct: 240 NSAGSVAPDSAKCS 253
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 38/190 (20%)
Query: 274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS--EALGNLTSI 331
+G+Q L ++R+L L N + + L +L YL L+ N LQ + + L NL +
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 332 SWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLR 391
++ L +G + L NL LNL N L+SL
Sbjct: 115 VLVENQLQSLPDGVFDK----LTNLTYLNL-------------------AHNQLQSL--- 148
Query: 392 SDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIH 451
++ LT N+ LD + N + L +L+ L+ LR+ N+L +
Sbjct: 149 PKGVFDKLT-------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV- 200
Query: 452 FANLTKLSWF 461
F LT L +
Sbjct: 201 FDRLTSLQYI 210
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 141/348 (40%), Gaps = 53/348 (15%)
Query: 150 LRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNL 209
+ LNL R + + LQ LDL++ +L + + + GL+ L+ L L SVN
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPS--GMKGLNLLKKLVL-SVN- 308
Query: 210 SKAFDWL--MVTNKLPSLVELRL-ANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPS 266
FD L + PSL L + N + H + +L LDLS N + S
Sbjct: 309 --HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 267 WVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG 326
L+NL+ L+ L L N LE L L+ L
Sbjct: 367 L-------QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ 419
Query: 327 NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH----------LSQEIS--EIL 374
NL + L+L+ ++ +A L L+ LNL+G H L Q + E+L
Sbjct: 420 NLHFLQVLNLTYCF-LDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVL 478
Query: 375 DIFSGCVSNGLESLDLRSDSIYGHLT--------------DQLGQFKNIVTLDFANNSIV 420
I S C GL S+D ++ G ++ D L K I L+ A NSI
Sbjct: 479 -ILSSC---GLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSIN 533
Query: 421 GLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL 468
+ P L LS + ++ N L+ T S IHF L+W++ + +KL
Sbjct: 534 IISPRLLPILSQQSTINLSHNPLDCTCSNIHF-----LTWYKENLHKL 576
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 31/191 (16%)
Query: 674 ALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNN 733
++ESL++ E+ F +I + + F+++ L L + G LP+G+ L L+ L ++ N+
Sbjct: 252 SVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNH 309
Query: 734 LSGAIPNCINNLTGMVTACSFTRSVQQYLP---LPIDVGVILVEKASVVSKGEMVDYEDI 790
++A +F Y+ + +GV +EK
Sbjct: 310 FDQLC---------QISAANFPSLTHLYIRGNVKKLHLGVGCLEK--------------- 345
Query: 791 LNLVRMIDISRNNFSGK--IPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFS 848
L ++ +D+S N+ L++ NL LQ+LN S+N G ++ LE +D +
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 849 ANQLSGEIPES 859
+L P+S
Sbjct: 406 FTRLHINAPQS 416
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 141/345 (40%), Gaps = 59/345 (17%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
F ++ L+L+ + G+ P + +++L+ L L++N D ++ SF D
Sbjct: 273 FRCFTRVQELDLTAAHLNGL-PSGIEGMNSLKKLVLNANSF---DQLCQINAASFPSLRD 328
Query: 204 LR-SVNLSKAFDWLMVTNKLPSLVELRLA----------NCQLHHFSLLATANFSSLTVL 252
L N+ K KL +L +L L+ N QL + L N S L
Sbjct: 329 LYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL 388
Query: 253 DLSDNQF---------DKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF 303
L D F D F V P QNL LR L L ++S + L
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAP-HSPFQNLHLLRVLNLSHCLLDTSNQHLLAGL 447
Query: 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
L +L+L NS Q SIS +L + + G + + S CNL S++ +
Sbjct: 448 QDLRHLNLQGNSFQDG----------SISKTNL---LQMVGSLEILILSSCNLLSIDQQA 494
Query: 364 VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLI 423
H + ++ LDL +S+ G D L K + L+ A+N+I +
Sbjct: 495 FHGLRNVNH---------------LDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIP 538
Query: 424 PESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL 468
P L LS ++ ++ N L+ T S IHF ++W++ + +KL
Sbjct: 539 PHLLPALSQQSIINLSHNPLDCTCSNIHF-----ITWYKENLHKL 578
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
N Q H FS L+++ F T + D + + +P G++ + SL+ L L++N
Sbjct: 259 NLQKHRFSDLSSSTFRCFTRVQELD-------LTAAHLNGLPSGIEGMNSLKKLVLNANS 311
Query: 292 FNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA 351
F+ F L L + N + + + L L ++ LDLS + IE +
Sbjct: 312 FDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLS-HSDIEA------S 364
Query: 352 SLCNLKSLNLR 362
CNL+ NLR
Sbjct: 365 DCCNLQLKNLR 375
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 89/415 (21%), Positives = 158/415 (38%), Gaps = 79/415 (19%)
Query: 452 FANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL 511
F + +L+ + GN L + P L L L + + + +++ ++L+ L+L
Sbjct: 76 FQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHL 135
Query: 512 VNSSISDI-FPIRFLKSASQLKFLDLGQNQIH---GPIPNLTEFTGLLILSVYSNNMSGP 567
++ IS I P F LK LD N IH N E L L+ N++ G
Sbjct: 136 GSNHISSINLPENF--PTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGI 193
Query: 568 LPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWM-SYQN 626
P + +F L F GS++ F+ ++ LQ N L W+ ++++
Sbjct: 194 EPGAFISKIFQSLK---FGGSLNLFIIFK--------GLQ------NSTLQSLWLGTFED 236
Query: 627 LKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV 686
L++ F G S+ S+ L ++R S + + T ++ LD+
Sbjct: 237 TDDQYLTSATFEGLCDMSVESIN------LQKHRFSDLSSSTFRCFTRVQELDLTAAHLN 290
Query: 687 GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLT 746
G +P+ I E + + L+L +N F LC + + D + G +
Sbjct: 291 G-LPSGI-EGMNSLKKLVLNANSF-----DQLCQINAASFPSLRDLYIKGNMRK------ 337
Query: 747 GMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 806
+D+G +EK + K +D+S ++
Sbjct: 338 -------------------LDLGTRCLEKLENLQK---------------LDLSHSDIEA 363
Query: 807 K--IPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES 859
L++ NL+ LQ LN SYN G ++ LE +D + L + P S
Sbjct: 364 SDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 35 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 90 QSLPLLGQT-LPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN+L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 34/190 (17%)
Query: 135 FQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLS 194
F+G FG+ L+YL+LS + M + LG L L+ LD + L + F
Sbjct: 361 FKGCCSQSDFGTTS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 195 GLSFLEHLDLRSVNLSKAFDWLM----------------VTNKLPSL-VELR------LA 231
L L +LD+ + AF+ + N LP + ELR L+
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
CQL S A + SSL VL+++ NQ +P +F LTSL+ + L +N
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIF-------DRLTSLQKIWLHTNP 529
Query: 292 FNSSIPNWLY 301
++ S P Y
Sbjct: 530 WDCSCPRIDY 539
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 145 GSMGNLRYLNLSRTRIGGM-IPHHLGNLSNLQFLDLSSN 182
G + L+ LN++ I +P + NL+NL+ LDLSSN
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 132/541 (24%), Positives = 215/541 (39%), Gaps = 85/541 (15%)
Query: 222 LPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281
P L L L+ C++ A + S L+ L L+ N I S G GL +L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-----IQSLALGAF-SGLSSLQK 104
Query: 282 LRHLGLDSNHFNSSIPNW-LYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN- 339
L + +++N +S+ N+ + L+ L++++N +Q E NLT++ LDLS N
Sbjct: 105 L--VAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 340 ----MGIEGRIPRSMASLCNLKSLNLRGVHLSQ--EISEILDIFSGCVSNGLESLDLRSD 393
+ R+ M L L+L ++ Q EI + + N +SL++
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219
Query: 394 SIYGHLTDQ-----LGQFKNIVTLD-FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTL 447
I G + LG+F+N L+ F +++ GL ++ + L D L+ +
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR----LAYLDYYLDDII 275
Query: 448 SAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQ 507
F LT +S F + +T+ D+ F L L NC G L L S K L
Sbjct: 276 DL--FNCLTNVSSFSLVS--VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331
Query: 508 FLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGP 567
F ++ + F L S L+FLDL +N + F G S +
Sbjct: 332 F---TSNKGGNAFSEVDLPS---LEFLDLSRNGL--------SFKGCCSQSDFG------ 371
Query: 568 LPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNL 627
+++L +LDLS F+G I T S N L L +L + NL
Sbjct: 372 ----TTSLKYLDLS---FNGVI----------TMSSNFLGLE------QLEHLDFQHSNL 408
Query: 628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG 687
K + ++F+ L SL +L++L + ++LE L + N F
Sbjct: 409 KQM----SEFSVFL-----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 688 NIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG 747
N I + L L + PT L+ LQ+L++A N L + LT
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519
Query: 748 M 748
+
Sbjct: 520 L 520
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 35 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 90 QSLPLLGQT-LPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN+L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 35 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 90 QSLPLLGQT-LPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN+L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 35 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 90 QSLPLLG-QTLPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQL 160
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 35 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 90 QSLPLLG-QTLPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQL 160
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 35 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 90 QSLPLLG-QTLPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQL 160
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 36 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQL 90
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 91 QSLPLLGQT-LPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 139
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN+L
Sbjct: 140 LPPGLLTPTPKLEKLSLANNNL 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 35 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 90 QSLPLLG-QTLPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 35 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 90 QSLPLLGQT-LPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN+L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
L LS N LLY + L + L L+L L+K L V LP L L L++ QL
Sbjct: 35 ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
LL +LTVLD+S N+ +P G L+ L L+ L L N +
Sbjct: 90 QSLPLLG-QTLPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
P L LE LSL+NN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNDL 160
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 218 VTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFG------- 270
V + L +L EL L + QL + + + LTVLDL NQ +PS VF
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT--VLPSAVFDRLVHLKE 116
Query: 271 ---------PIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
+PRG++ LT L HL LD N SIP+ +
Sbjct: 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAF 155
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
N + L L +N+ T P SL +L L+LG N+L + + T L LD+G N+
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPN 740
+P+ + +R + L + NK LP G+ L L L + N L +IP+
Sbjct: 101 TV-LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIPH 152
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 606 LQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGN 664
L L+DN + P + S NLK L L +N+ G LP + SLT L L LG N+L+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 665 ILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD 720
L+ L + N+ +P I ER + + L L N+ +P G D
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKS-IPHGAFD 156
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 445 GTLSAIHFANLTKLSWFRVDGNK---LTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLY 501
TLS F LTKL+W +D N+ L+ GV D +L LGL N + S PL ++
Sbjct: 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT---ELGTLGLANNQLAS-LPLGVF 103
Query: 502 SQ-KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG-PIPNLTEFTGLLILSV 559
L LYL + + + P ++LK L L NQ+ P + T L LS+
Sbjct: 104 DHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 560 YSNNM 564
+N +
Sbjct: 163 STNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 445 GTLSAIHFANLTKLSWFRVDGNK---LTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLY 501
TLS F LTKL+W +D N+ L+ GV D +L LGL N + S PL ++
Sbjct: 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT---ELGTLGLANNQLAS-LPLGVF 103
Query: 502 SQ-KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG-PIPNLTEFTGLLILSV 559
L LYL + + + P ++LK L L NQ+ P + T L LS+
Sbjct: 104 DHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 560 YSNNM 564
+N +
Sbjct: 163 STNQL 167
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 22/163 (13%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYV-----DNFWWLSGLSF 198
F + L +LNL ++ + +L+ L L L++N L + D+ L L +
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL-Y 113
Query: 199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQ 258
L L+S+ S FD +L L ELRL QL A ++L L LS NQ
Sbjct: 114 LGGNQLKSLP-SGVFD------RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 259 FDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
+P F L L+ + L N F+ S LY
Sbjct: 167 LQS--VPHGAF-------DRLGKLQTITLFGNQFDCSRCETLY 200
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 135 FQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLS 194
F+G FG+ L+YL+LS + M + LG L L+ LD + L + F
Sbjct: 66 FKGCCSQSDFGTTS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFL 123
Query: 195 GLSFLEHLDLRSVNLSKAFDWLM----------------VTNKLPSL-VELR------LA 231
L L +LD+ + AF+ + N LP + ELR L+
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
CQL S A + SSL VL++S N F + P + L SL+ L NH
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-------FSLDTFP--YKCLNSLQVLDYSLNH 234
Query: 292 FNSSIPNWLYRF-IHLEYLSLSNNSLQGTIDSEAL 325
+S L F L +L+L+ N T + ++
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 269
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 24/182 (13%)
Query: 530 QLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSI 589
QL+ LD H + ++EF+ L L NL++LD+S+ +
Sbjct: 102 QLEHLDFQ----HSNLKQMSEFSVFLSLR---------------NLIYLDISHTHTRVAF 142
Query: 590 SPFLCYRINETKSLNALQLNDN-YLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648
+ N SL L++ N + LPD + +NL L LS + P + SL
Sbjct: 143 NGIF----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 649 TSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 708
+SL L++ N K +L+ LD N + + + S + L L N
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Query: 709 KF 710
F
Sbjct: 259 DF 260
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 17/208 (8%)
Query: 133 NDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW 192
N Q I++ F + +L L LSR I + L+NL L+L N L + N +
Sbjct: 74 NQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132
Query: 193 LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ-LHHFSLLATANFSSLTV 251
+ LS L+ L LR+ + + N++PSL L L + L + S A S+L
Sbjct: 133 VY-LSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189
Query: 252 LDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSL 311
L+L+ + IP+ L L L L L NH ++ P +HL+ L +
Sbjct: 190 LNLAMCNLRE--IPN---------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 312 SNNSLQGTIDSEALGNLTSISWLDLSLN 339
+ +Q I+ A NL S+ ++L+ N
Sbjct: 239 IQSQIQ-VIERNAFDNLQSLVEINLAHN 265
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 135 FQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLS 194
F+G FG++ L+YL+LS + M + LG L L+ LD + L + F
Sbjct: 385 FKGCCSQSDFGTIS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFL 442
Query: 195 GLSFLEHLDLRSVNLSKAFDWLM----------------VTNKLPSL-VELR------LA 231
L L +LD+ + AF+ + N LP + ELR L+
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
CQL S A + SSL VL++S N F + P + L SL+ L NH
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-------FSLDTFP--YKCLNSLQVLDYSLNH 553
Query: 292 FNSSIPNWLYRF-IHLEYLSLSNNSLQGTIDSEAL 325
+S L F L +L+L+ N T + ++
Sbjct: 554 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 588
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 135/582 (23%), Positives = 220/582 (37%), Gaps = 89/582 (15%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
F S L+ L+LSR I + +LS+L L L+ N + + SGLS L+ L
Sbjct: 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLV 130
Query: 204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT-ANFSSLTVLDLSDNQFDKW 262
NL+ ++ + L +L EL +A+ + F L +N ++L LDLS N+
Sbjct: 131 AVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
+ R L + L S + + I ++ I L L+L NN +
Sbjct: 189 YCTDL------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 242
Query: 323 EALGNLTSISWLDLSL-NMGIEGRIPR----SMASLCNLKSLNLRGVHLSQEISEILDIF 377
+ L + L L EG + + ++ LCNL R +L + I+D+F
Sbjct: 243 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF 302
Query: 378 SGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANN---SIVGLIPESLGQLSTLR 434
+ C++N + S L S +I DF+ N + L+ GQ TL+
Sbjct: 303 N-CLTN-VSSFSLVSVTIER-------------VKDFSYNFGWQHLELVNCKFGQFPTLK 347
Query: 435 V-----LRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRN 489
+ L NK S + +L L + + N L +
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRN-----------------GLSFKG 387
Query: 490 CYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLT 549
C S F S K+L + ++S F QL+ LD H + ++
Sbjct: 388 CCSQSDF--GTISLKYLDLSFNGVITMSSNF-----LGLEQLEHLDFQ----HSNLKQMS 436
Query: 550 EFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLN 609
EF+ L L NL++LD+S+ + + N SL L++
Sbjct: 437 EFSVFLSLR---------------NLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMA 477
Query: 610 DN-YLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS 668
N + LPD + +NL L LS + P + SL+SL L++ N
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Query: 669 LKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF 710
K +L+ LD N + + + S + L L N F
Sbjct: 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 135 FQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLS 194
F+G FG+ L+YL+LS + M + LG L L+ LD + L + F
Sbjct: 361 FKGCCSQSDFGTTS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 195 GLSFLEHLDLRSVNLSKAFDWLM----------------VTNKLPSL-VELR------LA 231
L L +LD+ + AF+ + N LP + ELR L+
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
CQL S A + SSL VL++S N F + P + L SL+ L NH
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-------FSLDTFP--YKCLNSLQVLDYSLNH 529
Query: 292 FNSSIPNWLYRF-IHLEYLSLSNNSLQGTIDSEAL 325
+S L F L +L+L+ N T + ++
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 135/582 (23%), Positives = 220/582 (37%), Gaps = 89/582 (15%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
F S L+ L+LSR I + +LS+L L L+ N + + SGLS L+ L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLV 106
Query: 204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT-ANFSSLTVLDLSDNQFDKW 262
NL+ ++ + L +L EL +A+ + F L +N ++L LDLS N+
Sbjct: 107 AVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
+ R L + L S + + I ++ I L L+L NN +
Sbjct: 165 YCTDL------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 323 EALGNLTSISWLDLSL-NMGIEGRIPR----SMASLCNLKSLNLRGVHLSQEISEILDIF 377
+ L + L L EG + + ++ LCNL R +L + +I+D+F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 378 SGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANN---SIVGLIPESLGQLSTLR 434
+ C++N + S L S +I DF+ N + L+ GQ TL+
Sbjct: 279 N-CLTN-VSSFSLVSVTIER-------------VKDFSYNFGWQHLELVNCKFGQFPTLK 323
Query: 435 V-----LRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRN 489
+ L NK S + +L L + + N L +
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRN-----------------GLSFKG 363
Query: 490 CYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLT 549
C S F L F ++ S + FL QL+ LD H + ++
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSN------FL-GLEQLEHLDFQ----HSNLKQMS 412
Query: 550 EFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLN 609
EF+ L L NL++LD+S+ + + N SL L++
Sbjct: 413 EFSVFLSLR---------------NLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMA 453
Query: 610 DN-YLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS 668
N + LPD + +NL L LS + P + SL+SL L++ N
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 669 LKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF 710
K +L+ LD N + + + S + L L N F
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 113/500 (22%), Positives = 198/500 (39%), Gaps = 91/500 (18%)
Query: 276 LQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLD 335
L+ +L+ L L S+ N+ + Y LE+L LS+N L ++ S G L+S+ +L+
Sbjct: 72 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLN 130
Query: 336 LSLN----MGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLR 391
L N +G+ P +L NL++L + V EI I F+G S L L+++
Sbjct: 131 LMGNPYQTLGVTSLFP----NLTNLQTLRIGNVETFSEIRRI--DFAGLTS--LNELEIK 182
Query: 392 SDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL-------- 443
+ S+ + + L ++I L + L+ LS++R L + D L
Sbjct: 183 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 242
Query: 444 ---------------NGTLSAIHFANLTKLSWF-----RVDGNKLTLGVKHDWIPPF--- 480
L+ F L KL + V+ + TL D+ P
Sbjct: 243 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 302
Query: 481 -----QLVALGLRNCYVGSRFPLWLYSQKH--LQFLYLVNSSISDIF--PIRFLKSASQL 531
++ + +R ++ + + S + L+ + + S +F P F + L
Sbjct: 303 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 362
Query: 532 KFLDLGQNQI----------HGPIPNLTEFTGLLILS---VYSNNMSGPLPLISSNLVFL 578
+FLDL +N + G P+L L+LS + S +G + L NL L
Sbjct: 363 EFLDLSENLMVEEYLKNSACKGAWPSLQT----LVLSQNHLRSMQKTGEILLTLKNLTSL 418
Query: 579 DLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFT 638
D+S N F P C + + LN + +P Q L+ L +SNN
Sbjct: 419 DISRNTFHP--MPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNLD 470
Query: 639 GNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCT---ALESLDVGENEFVGNIPTWIGE 695
SL L E +S N L +L + + L + + N+ + ++P I +
Sbjct: 471 S---------FSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIASNQ-LKSVPDGIFD 520
Query: 696 RFSRMVVLILRSNKFHGPLP 715
R + + + L +N + P
Sbjct: 521 RLTSLQKIWLHTNPWDCSCP 540
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 148 GNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSV 207
NL+ L L +RI + +L +L+ LDLS N+L + + W+ LS L++L+L
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF-GPLSSLKYLNL--- 131
Query: 208 NLSKAFDWLMVTNKLPSLV---ELRLANCQLHHFSLLATANFSSLTVLD 253
+ + L VT+ P+L LR+ N + FS + +F+ LT L+
Sbjct: 132 -MGNPYQTLGVTSLFPNLTNLQTLRIGNVE--TFSEIRRIDFAGLTSLN 177
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 25/131 (19%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
+ +++ L+L+ T+I + P L LSNLQ L L N + N L+GL+ L++L
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ---ITNISPLAGLTNLQYLS 157
Query: 204 LRSV---------NLSKAFDWLMVTNK---------LPSLVELRLANCQLHHFSLLATAN 245
+ + NLSK NK LP+L+E+ L N Q+ S L AN
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPL--AN 215
Query: 246 FSSLTVLDLSD 256
S+L ++ L++
Sbjct: 216 TSNLFIVTLTN 226
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 412 LDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLG 471
LD +N + L ++ +L+ LR+L +NDNKL TL A F L L V NKL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL--- 97
Query: 472 VKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQ-KHLQFLYLVNSSISDIFPIRFLKSASQ 530
P+ ++ Q +L L L + + + P R S ++
Sbjct: 98 ----------------------QALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTK 134
Query: 531 LKFLDLGQNQIHG-PIPNLTEFTGLLILSVYSNNMS 565
L +L LG N++ P + T L L +Y+N +
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 37/169 (21%)
Query: 133 NDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW 192
N Q + I F + NL L L R ++ + P +L+ L +L L N L
Sbjct: 95 NKLQALPI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-------- 145
Query: 193 LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVL 252
+L K V +KL SL ELRL N QL A + L L
Sbjct: 146 --------------QSLPKG-----VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186
Query: 253 DLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
L +NQ + +P F +L L+ L L N ++ + +Y
Sbjct: 187 KLDNNQLKR--VPEGAF-------DSLEKLKMLQLQENPWDCTCNGIIY 226
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 76/194 (39%), Gaps = 17/194 (8%)
Query: 148 GNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDLR 205
+ + L+L ++ + L+ L+ L L+ N L L F L L L D +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 206 SVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIP 265
L + V ++L +L ELRL QL + + LT L L N+ +P
Sbjct: 97 LQALP-----IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LP 149
Query: 266 SWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEAL 325
VF LTSL+ L L +N + L+ L L NN L+ + A
Sbjct: 150 KGVF-------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAF 201
Query: 326 GNLTSISWLDLSLN 339
+L + L L N
Sbjct: 202 DSLEKLKMLQLQEN 215
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630
I ++ LDL +N S S+ +R+ + L L LNDN L + +NL+TL
Sbjct: 35 IPADTKKLDLQSNKLS-SLPSKAFHRLTK---LRLLYLNDNKLQTLPAGIFKELKNLETL 90
Query: 631 KLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSL-----KNCTALESLDVGENEF 685
+++NK LP +G LV +L E RL N L SL + T L L +G NE
Sbjct: 91 WVTDNKLQA-LP--IGVFDQLV--NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD-LAFLQILDIADNNLSGAIP 739
++P + ++ + + L L +N+ +P G D L L+ L + DNN +P
Sbjct: 146 -QSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKL-DNNQLKRVP 197
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 68/173 (39%), Gaps = 21/173 (12%)
Query: 200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLD---LSD 256
+ LDL+S LS + + L +LRL + L F L L+ ++D
Sbjct: 40 KKLDLQSNKLSS-----LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 257 NQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSL 316
N+ +P VF L +L L LD N S P L YLSL N L
Sbjct: 95 NKLQ--ALPIGVF-------DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 317 QGTIDSEALGNLTSISWLDLSLNMGIEGRIPR-SMASLCNLKSLNLRGVHLSQ 368
Q ++ LTS+ L L N R+P + L LK+L L L +
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQ--LKRVPEGAFDKLTELKTLKLDNNQLKR 195
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 405 QFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVD 464
+ KN+ TL +N + L QL L LR++ N+L +L F +LTKL++ +
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLG 141
Query: 465 GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQ-KHLQFLYLVNSSISDIFPIR 523
N+L K + L L L N + R P + + L+ L L N+ + + P
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRV-PEG 199
Query: 524 FLKSASQLKFLDLGQN 539
S +LK L L +N
Sbjct: 200 AFDSLEKLKMLQLQEN 215
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 13/172 (7%)
Query: 276 LQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLD 335
L+ +L+ L L S+ N+ + Y LE+L LS+N L ++ S G L+S+ +L+
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLN 104
Query: 336 LSLN----MGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLR 391
L N +G+ P +L NL++L + V EI I F+G S L L+++
Sbjct: 105 LMGNPYQTLGVTSLFP----NLTNLQTLRIGNVETFSEIRRI--DFAGLTS--LNELEIK 156
Query: 392 SDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL 443
+ S+ + + L ++I L + L+ LS++R L + D L
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 191/486 (39%), Gaps = 91/486 (18%)
Query: 278 NLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLS 337
+L SL HL L NH +S +W L+YL+L N Q + NLT++ L +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 338 LNMGIEGRIPR-SMASLCNLKSLNLRGV-----------------HLSQEISE---ILDI 376
N+ I R A L +L L ++ + HL+ +SE +L+I
Sbjct: 132 -NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190
Query: 377 FSGCVSNGLESLDLRSDSI----YGHL-TDQLGQ------FKNIVTLDFANNSIVGLIPE 425
F+ +S+ + L+LR ++ + L D++ F+ V D + N ++ L
Sbjct: 191 FADILSS-VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL--- 246
Query: 426 SLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVAL 485
L + L + +D LNG + N ++ G T+ ++ IP F L
Sbjct: 247 -LRYILELSEVEFDDCTLNG----LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-- 299
Query: 486 GLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI---- 541
Y S L K + V +S + P F + L+FLDL +N +
Sbjct: 300 -----YDLSTVYSLLEKVKRIT----VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 542 ------HGPIPNLTEFTGLLILS---VYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPF 592
G P+L L+LS + S +G + L NL LD+S N F P
Sbjct: 351 LKNSACKGAWPSLQT----LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPD 404
Query: 593 LCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLV 652
C + + LN + +P Q L+ L +SNN SL
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNLDS---------FSLF 449
Query: 653 WLHLGENRLSGNILVSLKNCT---ALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 709
L E +S N L +L + + L + + N+ + ++P I +R + + + L +N
Sbjct: 450 LPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 508
Query: 710 FHGPLP 715
+ P
Sbjct: 509 WDCSCP 514
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 148 GNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSV 207
NL+ L L +RI + +L +L+ LDLS N+L + + W+ LS L++L+L
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF-GPLSSLKYLNL--- 105
Query: 208 NLSKAFDWLMVTNKLPSLV---ELRLANCQLHHFSLLATANFSSLTVLD 253
+ + L VT+ P+L LR+ N + FS + +F+ LT L+
Sbjct: 106 -MGNPYQTLGVTSLFPNLTNLQTLRIGNVE--TFSEIRRIDFAGLTSLN 151
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 89/217 (41%), Gaps = 42/217 (19%)
Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDLRS 206
N RYLNL I + +L +L+ L LS N + + V F L L+ LE D R
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 207 VNL-SKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIP 265
+ ++AF++ L L EL L N + A SL LDL + + ++
Sbjct: 96 TTVPTQAFEY------LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 266 SWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNN--------SLQ 317
+ + L +LR+L L + IPN L + LE L LS N S Q
Sbjct: 150 A--------AFEGLVNLRYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 318 G---------------TIDSEALGNLTSISWLDLSLN 339
G TI+ A +L S+ L+LS N
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 80/201 (39%), Gaps = 47/201 (23%)
Query: 136 QGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSG 195
QGIQ + N+RYL L ++ + L L+NL +L L+ N L + N
Sbjct: 57 QGIQY------LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPN------ 102
Query: 196 LSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLS 255
FD KL +L EL L QL ++LT L L
Sbjct: 103 ---------------GVFD------KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLY 141
Query: 256 DNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNS 315
NQ +P VF LT+L L LD+N S + L+ LSL++N
Sbjct: 142 HNQLQS--LPKGVF-------DKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 316 LQGTIDS--EALGNLTSISWL 334
L+ D + L +LT I WL
Sbjct: 193 LKSVPDGVFDRLTSLTHI-WL 212
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 20/160 (12%)
Query: 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364
++ YL+L N L D AL LT++++L L+ N ++ L NLK L L
Sbjct: 64 NVRYLALGGNKLH---DISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVEN 119
Query: 365 HLSQEISEILDIFSGCV-----SNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSI 419
L + D + N L+SL ++ LT N+ LD NN +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSL---PKGVFDKLT-------NLTRLDLDNNQL 169
Query: 420 VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
L +L+ L+ L +NDN+L + F LT L+
Sbjct: 170 QSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV-FDRLTSLT 208
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 502 SQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYS 561
+Q L + + ++ SDI ++ ++ +++L LG N++H I L E T L L +
Sbjct: 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTG 94
Query: 562 NNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPD-C 620
N + LP N VF L+N L L L +N L LPD
Sbjct: 95 NQLQS-LP----NGVFDKLTN--------------------LKELVLVENQLQS-LPDGV 128
Query: 621 WMSYQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679
+ NL L L +N+ LP + LT+L L L N+L T L+ L
Sbjct: 129 FDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLS 187
Query: 680 VGENEFVGNIPTWIGERFSRMVVLILRSN 708
+ +N+ ++P + +R + + + L +N
Sbjct: 188 LNDNQL-KSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 89/217 (41%), Gaps = 42/217 (19%)
Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDLRS 206
N RYLNL I + +L +L+ L LS N + + V F L L+ LE D R
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 207 VNL-SKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIP 265
+ ++AF++ L L EL L N + A SL LDL + + ++
Sbjct: 96 TTVPTQAFEY------LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 266 SWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNN--------SLQ 317
+ + L +LR+L L + IPN L + LE L LS N S Q
Sbjct: 150 A--------AFEGLVNLRYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 318 G---------------TIDSEALGNLTSISWLDLSLN 339
G TI+ A +L S+ L+LS N
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 37.0 bits (84), Expect = 0.057, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKL--PSLVELRLANCQLHHFSLLATANFSSLTV 251
+GL+ L L LR+V+ + WL + P L L +A FS F +LT
Sbjct: 115 TGLA-LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTS 173
Query: 252 LDLSDNQ--FDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYL 309
LDLSDN ++ + + P +QNL +LR+ G+++ + L
Sbjct: 174 LDLSDNPGLGERGLMAALCPHKFP-AIQNL-ALRNTGMETP--TGVCAALAAAGVQPHSL 229
Query: 310 SLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQ 368
LS+NSL+ T++ A + S + L+L+ ++P+ + + L+ L+L L++
Sbjct: 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA--KLRVLDLSSNRLNR 286
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSI 331
+P+G+ + L LD N F + +P L + HL + LSNN + T+ +++ N+T +
Sbjct: 25 LPKGIPR--DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80
Query: 332 SWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLS 367
L LS N + PR+ L +L+ L+L G +S
Sbjct: 81 LTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKL 632
SNL ++S N+F L L LN N L ELP + NL+ L L
Sbjct: 232 SNLQIFNISANIFKYDF-------------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277
Query: 633 SNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTW 692
S+N+ T +LP +GS L + + +N ++ + N L+ L V N
Sbjct: 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335
Query: 693 IGERFSRMVVLILRSNKFHGPLP 715
+ E+ ++ LR N+ PLP
Sbjct: 336 LTEKSVTGLIFYLRDNRPEIPLP 358
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 218 VTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ 277
V ++L SL +L L +L +SLT L+LS NQ +P+ VF
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVF-------D 97
Query: 278 NLTSLRHLGLDSNHFNSSIPNWLY-RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWL 334
LT L+ L L++N S+P+ ++ + L+ L L N L+ D LTS+ ++
Sbjct: 98 KLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYI 153
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 648 LTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRS 707
LTSL L+LG N+L T+L L++ N+ ++P + ++ +++ L L +
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 708 NKFHGPLPTGLCD-LAFLQILDIADNNLSGAIPNCINNLTGM 748
N+ LP G+ D L L+ L + N L + LT +
Sbjct: 110 NQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 233 CQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHF 292
C + + T + T LDL N +P+ VF LTSL L L N
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDLETNSLKS--LPNGVF-------DELTSLTQLYLGGNKL 64
Query: 293 NSSIPNWLY-RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM 340
S +PN ++ + L YL+LS N LQ ++ + LT + L L+ N
Sbjct: 65 QS-LPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQ 111
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 141/348 (40%), Gaps = 77/348 (22%)
Query: 170 NLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELR 229
NL F ++SSN F SGL + LDL + +LS+ L+ L +L +L
Sbjct: 260 NLQKHYFFNISSN------TFHCFSGL---QELDLTATHLSELPSGLV---GLSTLKKLV 307
Query: 230 LANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDS 289
L+ + + ++ +NF SLT L + N G L+NL +LR L L
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGN------TKRLELGT--GCLENLENLRELDLSH 359
Query: 290 NHFNSS--IPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLS---------- 337
+ +S L HL+ L+LS N ++ +EA + LDL+
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418
Query: 338 -----------LNMG---IEGRIPRSMASLCNLKSLNLRGVHLS----QEIS-------- 371
LN+ ++ + L L+ LNL+G H Q+ +
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478
Query: 372 EILDIFSGCVSNGLES-----------LDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIV 420
EIL + S C + ++ +DL + + + L K I L+ A+N I
Sbjct: 479 EIL-VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHIS 536
Query: 421 GLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL 468
++P L LS R + + N L+ T S I+F L W++ + KL
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDCTCSNIYF-----LEWYKENMQKL 579
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 36/234 (15%)
Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNN 563
+HL L LVN+ IS I F +L+ L + +N + PNL + L+ L ++ N
Sbjct: 78 QHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR 134
Query: 564 MSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYL--NGELPDCW 621
+ + +FSG +++N +++ N L +G P +
Sbjct: 135 IR-------------KVPKGVFSG------------LRNMNCIEMGGNPLENSGFEPGAF 169
Query: 622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVG 681
+ L L++S K TG +P + +L LHL N++ L L + L L +G
Sbjct: 170 DGLK-LNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225
Query: 682 ENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
N+ + I + L L +NK +P GL DL LQ++ + NN++
Sbjct: 226 HNQ-IRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 101/238 (42%), Gaps = 43/238 (18%)
Query: 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM 340
+++ L L N + L F LE L+LS+N L T+D E+L L + LDL+ N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRT---LDLNNNY 91
Query: 341 GIEGRIPRSMASL-----------CNLKSLNLRGVHLS-QEISEILDIFSGCVSNGLESL 388
E + S+ +L C+ + + ++L+ +I+ + D+ GC S ++ L
Sbjct: 92 VQELLVGPSIETLHAANNNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYL 149
Query: 389 DLRSDSI---------------------YGHLTDQLGQ--FKNIVTLDFANNSIVGLIPE 425
DL+ + I Y + D GQ F + TLD ++N + + PE
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209
Query: 426 SLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLV 483
+ + + + +NKL A+ F+ L F + GN G D+ Q V
Sbjct: 210 -FQSAAGVTWISLRNNKLVLIEKALRFSQ--NLEHFDLRGNGFHCGTLRDFFSKNQRV 264
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 73/208 (35%), Gaps = 54/208 (25%)
Query: 243 TANFSSLTVL---DLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNW 299
A F+ L +L DLSDN + P+ G L L L LD P
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHG--------LGRLHTLHLDRCGLQELGPGL 124
Query: 300 LYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSL 359
L+YL L +N+LQ D + L NL L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDD--------------------------TFRDLGNLTHL 158
Query: 360 NLRGVHLSQEISEILDIFSGCVSNGLESLDL------RSDSIYGHLTDQLGQFKNIVTLD 413
L G +S GL SLD R ++ H LG+ ++TL
Sbjct: 159 FLHGNRISSVPERAF--------RGLHSLDRLLLHQNRVAHVHPHAFRDLGR---LMTLY 207
Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDN 441
N++ L E+L L L+ LR+NDN
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 13/216 (6%)
Query: 294 SSIPNWLYRFIH-LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMAS 352
S +P +R L L L +N L ID+ A L + LDLS N + P +
Sbjct: 45 SHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103
Query: 353 LCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTL 412
L L +L+L L QE+ +F G + L+ L L+ +++ D N+ L
Sbjct: 104 LGRLHTLHLDRCGL-QELGP--GLFRGLAA--LQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 413 DFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGV 472
N I + + L +L L ++ N++ + F +L +L + N L+
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 473 KHDWIPPFQLVALGLRN----CYVGSRFPLWLYSQK 504
P L L L + C +R PLW + QK
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK 252
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 73/208 (35%), Gaps = 54/208 (25%)
Query: 243 TANFSSLTVL---DLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNW 299
A F+ L +L DLSDN + P+ G L L L LD P
Sbjct: 72 AAAFTGLALLEQLDLSDNAQLRSVDPATFHG--------LGRLHTLHLDRCGLQELGPGL 123
Query: 300 LYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSL 359
L+YL L +N+LQ D + L NL L
Sbjct: 124 FRGLAALQYLYLQDNALQALPDD--------------------------TFRDLGNLTHL 157
Query: 360 NLRGVHLSQEISEILDIFSGCVSNGLESLDL------RSDSIYGHLTDQLGQFKNIVTLD 413
L G +S GL SLD R ++ H LG+ ++TL
Sbjct: 158 FLHGNRISSVPERAF--------RGLHSLDRLLLHQNRVAHVHPHAFRDLGR---LMTLY 206
Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDN 441
N++ L E+L L L+ LR+NDN
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 13/216 (6%)
Query: 294 SSIPNWLYRFIH-LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMAS 352
S +P +R L L L +N L ID+ A L + LDLS N + P +
Sbjct: 44 SHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 102
Query: 353 LCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTL 412
L L +L+L L QE+ +F G + L+ L L+ +++ D N+ L
Sbjct: 103 LGRLHTLHLDRCGL-QELGP--GLFRGLAA--LQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 413 DFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGV 472
N I + + L +L L ++ N++ + F +L +L + N L+
Sbjct: 158 FLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 473 KHDWIPPFQLVALGLRN----CYVGSRFPLWLYSQK 504
P L L L + C +R PLW + QK
Sbjct: 217 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK 251
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 12/203 (5%)
Query: 306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH 365
L L L +N+L G ID+ A LT + LDLS N + P + L +L +L+L
Sbjct: 57 LTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 366 LSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPE 425
L QE+ +F G + L+ L L+ +++ + N+ L N I +
Sbjct: 116 L-QELGP--GLFRGLAA--LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEH 170
Query: 426 SLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVAL 485
+ L +L L ++ N + + F +L +L + N L++ +P L L
Sbjct: 171 AFRGLHSLDRLLLHQNHV-ARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYL 229
Query: 486 GLRN----CYVGSRFPLWLYSQK 504
L + C +R PLW + QK
Sbjct: 230 RLNDNPWVCDCRAR-PLWAWLQK 251
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 621 WMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV 680
+ + +NL TL L NNK + P + L L L+L +N+L + K L+ L V
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRV 128
Query: 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAF-----LQILDIADNNLS 735
ENE + + + ++M+V+ L +N +G+ + AF L + IAD N++
Sbjct: 129 HENE-ITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIADTNIT 184
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 621 WMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV 680
+ + +NL TL L NNK + P + L L L+L +N+L + K L+ L V
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRV 128
Query: 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAF-----LQILDIADNNLS 735
ENE + + + ++M+V+ L +N +G+ + AF L + IAD N++
Sbjct: 129 HENE-ITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIADTNIT 184
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW--LSGLSFLEHLDLRS 206
NL+ L L+ I + +L +L+ LDLS NYL + + W+ LS L+FL L
Sbjct: 51 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG--- 107
Query: 207 VNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPS 266
N K + + L L LR+ N + F+ + +F+ LT L+ + + D + S
Sbjct: 108 -NPYKTLGETSLFSHLTKLQILRVGN--MDTFTKIQRKDFAGLTFLE--ELEIDASDLQS 162
Query: 267 WVFGPIPRGLQNLTSLRHLGL 287
+ P+ L+++ ++ HL L
Sbjct: 163 YE----PKSLKSIQNVSHLIL 179
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 117/303 (38%), Gaps = 71/303 (23%)
Query: 278 NLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLS 337
+L SL HL L N+ ++ +W L +L+L N + ++ +LT + L +
Sbjct: 72 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 131
Query: 338 LNMGIEGRI-------------------------PRSMASLCNLKSLNLRGVHLSQEISE 372
NM +I P+S+ S+ N+ L L H+ Q I
Sbjct: 132 -NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL---HMKQHIL- 186
Query: 373 ILDIFSGCVSNGLESLDLRSDSIYGHLTDQLG-----------QFKNIVTLDFANNSIVG 421
+L+IF V++ +E L+LR + +L F+N+ D + ++
Sbjct: 187 LLEIFVD-VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 245
Query: 422 LIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQ 481
L L Q+S L L +D LNG + FR N I P +
Sbjct: 246 L----LNQISGLLELEFDDCTLNG------------VGNFRASDNDRV-------IDPGK 282
Query: 482 LVALGLRNCYVGSRFPLW-----LYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDL 536
+ L +R ++ RF L+ LYS V +S + P + L++LDL
Sbjct: 283 VETLTIRRLHI-PRFYLFYDLSTLYSLTERVKRITVENSKVFLVPCLLSQHLKSLEYLDL 341
Query: 537 GQN 539
+N
Sbjct: 342 SEN 344
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 122/330 (36%), Gaps = 71/330 (21%)
Query: 132 FNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMI--PHHLGNLSNLQFLDLSSNYLLYVDN 189
+N F ++ F G + NL L L++ + G + + L++L+ L L N + +
Sbjct: 88 YNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146
Query: 190 FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSL 249
+ + LDL NK+ S+ E L N Q HF+LL SS+
Sbjct: 147 ASFFLNMRRFHVLDL-------------TFNKVKSICEEDLLNFQGKHFTLL---RLSSI 190
Query: 250 TVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYL 309
T+ D++ + W P TS+ L L N F S+ +
Sbjct: 191 TLQDMN----EYWLGWEKCGNPFKN-----TSITTLDLSGNGFKESMAKRFF-------- 233
Query: 310 SLSNNSLQGT-IDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQ 368
+++ GT I S L N S NMG S N K +
Sbjct: 234 ----DAIAGTKIQSLILSN---------SYNMG-------SSFGHTNFKDPDNF------ 267
Query: 369 EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLG 428
F G ++G+++ DL I+ L F ++ L A N I + +
Sbjct: 268 -------TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 429 QLSTLRVLRINDNKLNGTLSAIHFANLTKL 458
L+ L+ L ++ N+L I F LT L
Sbjct: 321 GLTHLKELALDTNQLKSVPDGI-FDRLTSL 349
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW--LSGLSFLEHLDLRS 206
NL+ L L+ I + +L +L+ LDLS NYL + + W+ LS L+FL L
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG--- 133
Query: 207 VNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPS 266
N K + + L L LR+ N + F+ + +F+ LT L+ + + D + S
Sbjct: 134 -NPYKTLGETSLFSHLTKLQILRVGN--MDTFTKIQRKDFAGLTFLE--ELEIDASDLQS 188
Query: 267 WVFGPIPRGLQNLTSLRHLGL 287
+ P+ L+++ ++ HL L
Sbjct: 189 YE----PKSLKSIQNVSHLIL 205
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 104/439 (23%), Positives = 169/439 (38%), Gaps = 65/439 (14%)
Query: 224 SLVELRLANCQL--HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281
S+ L LAN QL S + +++LT LDLS N S+ + P S
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP---------S 273
Query: 282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLT--SISWLDL--S 337
LR+L L+ N+ P Y +L YLSL + ++ + N+ S WL
Sbjct: 274 LRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEY 333
Query: 338 LNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYG 397
LNM + IP + + + F+G VS SL S+
Sbjct: 334 LNMD-DNNIPSTKS-----------------------NTFTGLVSLKYLSLSKTFTSLQT 369
Query: 398 HLTDQLGQFKN--IVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANL 455
+ + ++TL+ N I + + L LR+L + N++ LS + L
Sbjct: 370 LTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGL 429
Query: 456 TKLSWFRVDGNK-LTLGVKH-DWIPPFQLVAL---GLRNCYVGSRFPLWLYSQKHLQFLY 510
+ + NK L L +P Q + L L+N + P ++L L
Sbjct: 430 RNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS---PSPFRPLRNLTILD 486
Query: 511 LVNSSISDIFPIRFLKSASQLKFLDLGQNQIH---------GPIPNLTEFTGLLILSVYS 561
L N++I++I L+ L+ LD N + GP+ L + L IL++ S
Sbjct: 487 LSNNNIANINE-DLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLES 545
Query: 562 NNMSGPLPLISSNLVFLD--LSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPD 619
N + + NL L + PF+ ++ SL +L L N + D
Sbjct: 546 NGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFI---FDDQTSLRSLNLQKNLITSVEKD 602
Query: 620 CW-MSYQNLKTLKLSNNKF 637
+ +QNL +L + N F
Sbjct: 603 VFGPPFQNLNSLDMRFNPF 621
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 22/161 (13%)
Query: 132 FNDFQGIQIPRFFGSMGNLRYLNLSR--TRIGGMIPHHLGNLSNLQFLDLSSNYLLYV-- 187
+N+ Q + PR F + NLRYL+L R T+ + H N+ + F L YL Y+
Sbjct: 281 YNNIQRLS-PRSFYGLSNLRYLSLKRAFTKQSVSLASH-PNIDDFSFQWLK--YLEYLNM 336
Query: 188 --DNFWWLSGLSFLEHLDLRSVNLSKAFDWLM-VTNK-LPSLVE--LRLANCQLHHFSLL 241
+N +F + L+ ++LSK F L +TN+ SL L N +H S +
Sbjct: 337 DDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKI 396
Query: 242 ATANFS---SLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL 279
A FS L +LDL N+ I + G RGL+N+
Sbjct: 397 ANGTFSWLGQLRILDLGLNE-----IEQKLSGQEWRGLRNI 432
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 356 LKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFA 415
LK LNL+ LSQ IS+ +F C L LDL S+SI+ ++ KN++ LD +
Sbjct: 75 LKVLNLQHNELSQ-ISDQTFVF--CT--NLTELDLMSNSIHKIKSNPFKNQKNLIKLDLS 129
Query: 416 NNSIVGLIPESLG 428
+N GL LG
Sbjct: 130 HN---GLSSTKLG 139
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLN 444
+++LDL S I L N+ L N I + P L L+ L+ L I +N++N
Sbjct: 115 IKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVN 170
Query: 445 GTLSAIHFANLTKLSWFRVDGNKLT 469
ANL+KL+ R D NK++
Sbjct: 171 DLTP---LANLSKLTTLRADDNKIS 192
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Query: 193 LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVL 252
+ G+ +L +L + ++ D + N L + EL L+ L + S A A S+ L
Sbjct: 62 IEGIQYLNNLIGLELKDNQITDLTPLKN-LTKITELELSGNPLKNVS--AIAGLQSIKTL 118
Query: 253 DLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLS 312
DL+ Q P L L++L+ L LD N + P L +L+YLS+
Sbjct: 119 DLTSTQITD-VTP----------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG 165
Query: 313 NNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLS 367
NN + D L NL+ ++ L N I P +ASL NL ++L+ +S
Sbjct: 166 NNQVN---DLTPLANLSKLTTLRADDNK-ISDISP--LASLPNLIEVHLKDNQIS 214
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 559 VYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP 618
+ S+ + G LP +LV L+L N +G I P + LQL +N +
Sbjct: 44 ISSDGLFGRLP----HLVKLELKRNQLTG-IEP---NAFEGASHIQELQLGENKIKEISN 95
Query: 619 DCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNI 665
++ LKTL L +N+ + +P S L SL L+L N + N
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 43/237 (18%)
Query: 282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG 341
++ L L N + L F LE L+LS+N L T+D E+L L + LDL+ N
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRT---LDLNNNYV 92
Query: 342 IEGRIPRSMASL-----------CNLKSLNLRGVHLS-QEISEILDIFSGCVSNGLESLD 389
E + S+ +L C+ + + ++L+ +I+ + D+ GC S ++ LD
Sbjct: 93 QELLVGPSIETLHAANNNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLD 150
Query: 390 LR---------------SDSI------YGHLTDQLGQ--FKNIVTLDFANNSIVGLIPES 426
L+ SD++ Y + D GQ F + TLD ++N + + PE
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE- 209
Query: 427 LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLV 483
+ + + + +NKL A+ F+ L F + GN G D+ Q V
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQ--NLEHFDLRGNGFHCGTLRDFFSKNQRV 264
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 35/126 (27%)
Query: 705 LRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP--------NCINNLTGMVTACSFTR 756
L+ N+F P P +LD NNL+ + N +N TG
Sbjct: 830 LQLNRFLPPTPVRX-------LLDKNGNNLAAQVEFETFNRQLNAVNRHTG----SKLVN 878
Query: 757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK 816
+VQQ + + +G +EK++ +ID +RN K+ E++ L+
Sbjct: 879 AVQQDVHAILQLGEAQIEKSARA----------------LIDAARNEADEKLSAELSRLE 922
Query: 817 ALQSLN 822
AL+++N
Sbjct: 923 ALRAVN 928
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 20/135 (14%)
Query: 147 MGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRS 206
+ NL L LS + + + NL++LDLSSN+L +D F + S L LE L L +
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF-SDLQALEVLLLYN 121
Query: 207 VNL----SKAFDWLMVTNKLPSLVELRLANCQLHHF--SLLATAN-FSSLTVLDLSDNQF 259
++ AF+ + L +L L+ Q+ F L+ N L +LDLS N+
Sbjct: 122 NHIVVVDRNAFE------DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Query: 260 DK------WFIPSWV 268
K +P+WV
Sbjct: 176 KKLPLTDLQKLPAWV 190
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 218 VTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-L 276
V ++L L L L N QL + LT L L+DNQ IPRG
Sbjct: 57 VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS----------IPRGAF 106
Query: 277 QNLTSLRHLGLDSNHFNSSIPNWLY 301
NL SL H+ L +N ++ + + LY
Sbjct: 107 DNLKSLTHIWLLNNPWDCACSDILY 131
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 218 VTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-L 276
V ++L L L L N QL + LT L L+DNQ IPRG
Sbjct: 49 VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS----------IPRGAF 98
Query: 277 QNLTSLRHLGLDSNHFNSSIPNWLY 301
NL SL H+ L +N ++ + + LY
Sbjct: 99 DNLKSLTHIWLLNNPWDCACSDILY 123
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 145 GSMGNLRYLNLSRTRIGGM-IPHHLGNLSNLQFLDLSSNYL 184
G + L+ LN++ I +P + NL+NL+ LDLSSN +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 145 GSMGNLRYLNLSRTRIGGM-IPHHLGNLSNLQFLDLSSNYL 184
G + L+ LN++ I +P + NL+NL+ LDLSSN +
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 144 FGSMGNLRYLNLSRTRIGGM-IPHHLGNLSNLQFLDLSSNYL 184
G + L+ LN++ I +P + NL+NL+ LDLSSN +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 145 GSMGNLRYLNLSRTRIGGM-IPHHLGNLSNLQFLDLSSNYL 184
G + L+ LN++ I +P + NL+NL+ LDLSSN +
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 144 FGSMGNLRYLNLSRTRIGGM-IPHHLGNLSNLQFLDLSSNYL 184
G + L+ LN++ I +P + NL+NL+ LDLSSN +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 149/599 (24%), Positives = 224/599 (37%), Gaps = 107/599 (17%)
Query: 218 VTNKLPS-LVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGL 276
V + LP+ + L L + QL +S LT LD+ N K P
Sbjct: 29 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL---------EPELC 79
Query: 277 QNLTSLRHLGLDSNHFNSSIPNWLYRF-IHLEYLSLSNNSLQGTIDSEALGNLTSISWLD 335
Q L L+ L L N S + + + F +L L L +NS+Q I + ++ LD
Sbjct: 80 QKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLD 137
Query: 336 LSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSI 395
LS N G+ + L NL+ L L + SE LDIF+ + L+ L+L S+ I
Sbjct: 138 LSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQI 193
Query: 396 -------YGHLTDQLGQFKNIVTL----------DFANNSIVGLIPESLGQLST------ 432
+ + G F N V L + AN SI L S QLST
Sbjct: 194 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL-SLSNSQLSTTSNTTF 252
Query: 433 -------LRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVAL 485
L +L ++ N LN + FA L +L +F ++ N + H F + L
Sbjct: 253 LGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 311
Query: 486 GLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPI 545
L+ + Q + L + D F ++LK L+ L++ N I G
Sbjct: 312 NLKRSFTK-------------QSISLASLPKIDDFSFQWLKC---LEHLNMEDNDIPGIK 355
Query: 546 PNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSN------NLFSGSISPFLCYRINE 599
N+ FTGL+ L S + S +N F+ L++ NL IS +
Sbjct: 356 SNM--FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 413
Query: 600 TKSLNALQLNDNYLNGELP-DCWMSYQNLKTLKLSNNKF--------------------- 637
L L L N + EL W +N+ + LS NK+
Sbjct: 414 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 473
Query: 638 -----TGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV------ 686
+ P L +L L L N ++ L+ LE LD+ N
Sbjct: 474 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 533
Query: 687 -GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
P + + S + +L L SN F DL L+I+D+ NNL+ + NN
Sbjct: 534 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 592
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 218 VTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-L 276
V ++L L L L N QL + LT L L+DNQ IPRG
Sbjct: 49 VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS----------IPRGAF 98
Query: 277 QNLTSLRHLGLDSNHFNSSIPNWLY 301
NL SL H+ L +N ++ + + LY
Sbjct: 99 DNLRSLTHIWLLNNPWDCACSDILY 123
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 149/599 (24%), Positives = 224/599 (37%), Gaps = 107/599 (17%)
Query: 218 VTNKLPS-LVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGL 276
V + LP+ + L L + QL +S LT LD+ N K P
Sbjct: 24 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL---------EPELC 74
Query: 277 QNLTSLRHLGLDSNHFNSSIPNWLYRF-IHLEYLSLSNNSLQGTIDSEALGNLTSISWLD 335
Q L L+ L L N S + + + F +L L L +NS+Q I + ++ LD
Sbjct: 75 QKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLD 132
Query: 336 LSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSI 395
LS N G+ + L NL+ L L + SE LDIF+ + L+ L+L S+ I
Sbjct: 133 LSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQI 188
Query: 396 -------YGHLTDQLGQFKNIVTL----------DFANNSIVGLIPESLGQLST------ 432
+ + G F N V L + AN SI L S QLST
Sbjct: 189 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL-SLSNSQLSTTSNTTF 247
Query: 433 -------LRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVAL 485
L +L ++ N LN + FA L +L +F ++ N + H F + L
Sbjct: 248 LGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 306
Query: 486 GLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPI 545
L+ + Q + L + D F ++LK L+ L++ N I G
Sbjct: 307 NLKRSFTK-------------QSISLASLPKIDDFSFQWLKC---LEHLNMEDNDIPGIK 350
Query: 546 PNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSN------NLFSGSISPFLCYRINE 599
N+ FTGL+ L S + S +N F+ L++ NL IS +
Sbjct: 351 SNM--FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 408
Query: 600 TKSLNALQLNDNYLNGELP-DCWMSYQNLKTLKLSNNKF--------------------- 637
L L L N + EL W +N+ + LS NK+
Sbjct: 409 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 468
Query: 638 -----TGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV------ 686
+ P L +L L L N ++ L+ LE LD+ N
Sbjct: 469 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 528
Query: 687 -GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
P + + S + +L L SN F DL L+I+D+ NNL+ + NN
Sbjct: 529 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 587
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
V+++D+ NN IP +VT+L+ALQ LN + N +P+ GV L S+ +
Sbjct: 452 VKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS-VPD--GVFDRLTSLQY 501
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 149/599 (24%), Positives = 224/599 (37%), Gaps = 107/599 (17%)
Query: 218 VTNKLPS-LVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGL 276
V + LP+ + L L + QL +S LT LD+ N K P
Sbjct: 19 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL---------EPELC 69
Query: 277 QNLTSLRHLGLDSNHFNSSIPNWLYRF-IHLEYLSLSNNSLQGTIDSEALGNLTSISWLD 335
Q L L+ L L N S + + + F +L L L +NS+Q I + ++ LD
Sbjct: 70 QKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLD 127
Query: 336 LSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSI 395
LS N G+ + L NL+ L L + SE LDIF+ + L+ L+L S+ I
Sbjct: 128 LSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQI 183
Query: 396 -------YGHLTDQLGQFKNIVTL----------DFANNSIVGLIPESLGQLST------ 432
+ + G F N V L + AN SI L S QLST
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL-SLSNSQLSTTSNTTF 242
Query: 433 -------LRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVAL 485
L +L ++ N LN + FA L +L +F ++ N + H F + L
Sbjct: 243 LGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301
Query: 486 GLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPI 545
L+ + Q + L + D F ++LK L+ L++ N I G
Sbjct: 302 NLKRSFTK-------------QSISLASLPKIDDFSFQWLKC---LEHLNMEDNDIPGIK 345
Query: 546 PNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSN------NLFSGSISPFLCYRINE 599
N+ FTGL+ L S + S +N F+ L++ NL IS +
Sbjct: 346 SNM--FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Query: 600 TKSLNALQLNDNYLNGELP-DCWMSYQNLKTLKLSNNKF--------------------- 637
L L L N + EL W +N+ + LS NK+
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 638 -----TGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV------ 686
+ P L +L L L N ++ L+ LE LD+ N
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523
Query: 687 -GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
P + + S + +L L SN F DL L+I+D+ NNL+ + NN
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 66/158 (41%), Gaps = 13/158 (8%)
Query: 408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNK 467
N+ +L+ +NN I + P + L + L +N NKL ANL L W +D NK
Sbjct: 67 NLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK 121
Query: 468 LTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKS 527
VK L + G L L+ LYL N+ I+D I L
Sbjct: 122 ----VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD---ITVLSR 174
Query: 528 ASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMS 565
++L L L NQI +P L T L L + N++S
Sbjct: 175 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 211
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 400 TDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
TD L KN+ L NN + ++ LG LS L VL ++ N++ T L K++
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG---LTRLKKVN 175
Query: 460 WFRVDGNK 467
W + G K
Sbjct: 176 WIDLTGQK 183
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 28/219 (12%)
Query: 139 QIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL--LYVDNFWWLSGL 196
++P+ G N RYLNL I + +L +L+ L L N + + V F L+ L
Sbjct: 68 EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 197 SFLEHLD-LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDL- 254
+ LE D +V S AF++ L L EL L N + A SL LDL
Sbjct: 126 NTLELFDNWLTVIPSGAFEY------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179
Query: 255 --------SDNQFDKWFIPSWV------FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWL 300
S+ F+ F ++ +P L L L L + NHF P
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSF 238
Query: 301 YRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
+ L+ L + N+ + I+ A L S+ L+L+ N
Sbjct: 239 HGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHN 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,014,099
Number of Sequences: 62578
Number of extensions: 1071886
Number of successful extensions: 2912
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 2093
Number of HSP's gapped (non-prelim): 431
length of query: 979
length of database: 14,973,337
effective HSP length: 108
effective length of query: 871
effective length of database: 8,214,913
effective search space: 7155189223
effective search space used: 7155189223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)