Query 042359
Match_columns 979
No_of_seqs 860 out of 5204
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.9E-71 1.3E-75 697.2 48.4 609 1-903 1-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.7E-56 1.7E-60 559.6 42.3 515 223-901 69-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.7E-35 3.7E-40 312.9 5.2 366 125-512 80-447 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 1.1E-38 2.5E-43 322.9 -19.4 455 272-853 83-541 (565)
5 KOG0472 Leucine-rich repeat pr 100.0 1.8E-37 3.9E-42 314.2 -10.9 477 247-877 45-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 1.8E-34 3.9E-39 305.2 10.3 374 380-849 75-448 (873)
7 KOG0618 Serine/threonine phosp 100.0 6.2E-36 1.3E-40 333.5 -3.6 244 572-875 240-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.5E-33 3.2E-38 314.6 -5.4 399 402-897 86-486 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-31 2.3E-36 285.5 -2.7 362 406-852 6-374 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 5.4E-31 1.2E-35 280.2 -3.0 369 120-662 4-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 1E-24 2.2E-29 221.9 -3.5 224 597-874 270-498 (498)
12 KOG4237 Extracellular matrix p 99.9 3.6E-24 7.9E-29 218.0 -0.9 289 124-492 68-358 (498)
13 PLN03210 Resistant to P. syrin 99.9 4.9E-21 1.1E-25 242.1 26.7 337 448-851 550-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 8.6E-21 1.9E-25 240.0 25.1 336 476-875 554-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1.5E-21 3.3E-26 227.6 16.6 240 554-882 224-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2.4E-21 5.1E-26 226.0 15.0 266 506-863 203-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 8.6E-20 1.9E-24 214.8 12.8 228 572-878 198-429 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-19 3E-24 213.2 9.9 265 505-879 179-447 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 9.8E-19 2.1E-23 192.7 -1.3 162 574-735 24-206 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.3E-17 9.4E-22 179.6 4.7 161 152-317 2-178 (319)
21 KOG0617 Ras suppressor protein 99.7 7.9E-18 1.7E-22 152.2 -1.1 143 600-748 32-175 (264)
22 KOG0617 Ras suppressor protein 99.6 2.5E-18 5.4E-23 155.4 -5.3 181 648-881 32-216 (264)
23 PLN03150 hypothetical protein; 99.6 4.1E-15 8.8E-20 175.5 11.7 116 794-909 420-538 (623)
24 PLN03150 hypothetical protein; 99.4 7.4E-13 1.6E-17 156.4 12.8 128 39-185 368-503 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.2E-13 2.6E-18 148.2 -5.2 195 600-851 74-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 2.6E-13 5.7E-18 145.6 -4.3 195 624-875 74-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.7E-16 140.1 7.4 123 605-733 97-220 (394)
28 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4.2E-16 138.6 7.4 83 795-881 212-294 (394)
29 KOG3207 Beta-tubulin folding c 99.2 5.5E-12 1.2E-16 131.7 1.3 189 120-317 118-314 (505)
30 KOG3207 Beta-tubulin folding c 99.1 2.4E-11 5.3E-16 127.0 0.6 162 170-339 119-281 (505)
31 PF14580 LRR_9: Leucine-rich r 99.0 2E-10 4.4E-15 110.5 4.3 86 121-212 17-103 (175)
32 PF14580 LRR_9: Leucine-rich r 99.0 4.6E-10 1E-14 108.1 5.9 111 144-293 15-126 (175)
33 KOG1909 Ran GTPase-activating 99.0 1.1E-10 2.5E-15 118.9 0.3 254 116-420 23-311 (382)
34 KOG1909 Ran GTPase-activating 98.9 3E-10 6.5E-15 115.9 1.5 64 406-469 156-226 (382)
35 KOG1259 Nischarin, modulator o 98.9 3.5E-10 7.6E-15 112.2 1.6 45 115-161 206-250 (490)
36 KOG1259 Nischarin, modulator o 98.8 4.9E-10 1.1E-14 111.2 -1.0 106 146-260 282-387 (490)
37 PF13855 LRR_8: Leucine rich r 98.8 5.8E-09 1.3E-13 82.4 4.4 60 817-876 2-61 (61)
38 PF08263 LRRNT_2: Leucine rich 98.7 1.3E-08 2.7E-13 73.3 4.3 40 41-80 1-43 (43)
39 KOG0531 Protein phosphatase 1, 98.7 1.4E-09 3E-14 123.4 -1.5 193 121-339 70-265 (414)
40 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.8E-13 80.5 4.2 60 793-852 2-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.7E-13 123.0 5.0 109 119-230 567-675 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.9E-08 4.1E-13 121.6 5.6 84 122-208 544-629 (889)
43 KOG0531 Protein phosphatase 1, 98.6 1.5E-08 3.3E-13 114.9 0.9 226 116-368 88-319 (414)
44 KOG2120 SCF ubiquitin ligase, 98.5 1.4E-09 3.1E-14 108.1 -7.1 182 124-339 186-373 (419)
45 KOG2982 Uncharacterized conser 98.5 2.7E-08 5.9E-13 99.2 0.9 211 227-471 49-264 (418)
46 KOG2120 SCF ubiquitin ligase, 98.5 5E-09 1.1E-13 104.3 -4.8 224 126-364 139-373 (419)
47 KOG2982 Uncharacterized conser 98.4 6.6E-08 1.4E-12 96.5 0.3 92 169-260 42-134 (418)
48 KOG1859 Leucine-rich repeat pr 98.3 2.1E-08 4.6E-13 111.3 -5.3 180 642-879 102-294 (1096)
49 KOG4579 Leucine-rich repeat (L 98.2 3.9E-08 8.4E-13 86.8 -4.7 84 795-881 80-163 (177)
50 KOG1859 Leucine-rich repeat pr 98.1 1.8E-08 3.8E-13 111.9 -10.7 104 221-339 185-289 (1096)
51 KOG4341 F-box protein containi 98.0 3.5E-07 7.5E-12 96.0 -3.6 282 148-466 138-436 (483)
52 KOG4579 Leucine-rich repeat (L 98.0 6.9E-07 1.5E-11 79.1 -1.6 111 201-323 31-141 (177)
53 COG5238 RNA1 Ran GTPase-activa 97.9 2.2E-06 4.8E-11 84.7 0.4 14 171-184 29-42 (388)
54 PRK15386 type III secretion pr 97.9 2.3E-05 5E-10 85.0 7.4 77 645-734 48-124 (426)
55 KOG1644 U2-associated snRNP A' 97.8 1.9E-05 4.1E-10 75.2 4.7 108 123-233 42-150 (233)
56 COG5238 RNA1 Ran GTPase-activa 97.8 1.3E-05 2.9E-10 79.3 3.7 143 83-236 29-198 (388)
57 KOG4341 F-box protein containi 97.8 8.7E-07 1.9E-11 93.1 -5.0 288 124-443 139-438 (483)
58 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.4E-10 56.7 3.2 37 149-186 2-38 (44)
59 PF12799 LRR_4: Leucine Rich r 97.7 1.3E-05 2.9E-10 57.7 1.7 8 797-804 6-13 (44)
60 KOG1644 U2-associated snRNP A' 97.6 9.8E-05 2.1E-09 70.5 6.0 62 224-293 65-126 (233)
61 PRK15386 type III secretion pr 97.5 0.00026 5.7E-09 77.0 8.3 32 673-708 156-187 (426)
62 KOG2739 Leucine-rich acidic nu 97.5 6.8E-05 1.5E-09 74.9 2.9 95 115-212 35-131 (260)
63 KOG3665 ZYG-1-like serine/thre 97.5 4.7E-05 1E-09 90.1 2.1 35 220-256 170-204 (699)
64 KOG3665 ZYG-1-like serine/thre 97.4 5.9E-05 1.3E-09 89.3 2.1 134 123-260 122-263 (699)
65 KOG2123 Uncharacterized conser 96.9 3.8E-05 8.2E-10 76.5 -5.0 87 121-212 17-103 (388)
66 KOG2739 Leucine-rich acidic nu 96.5 0.0015 3.2E-08 65.6 2.2 93 141-236 36-129 (260)
67 PF13306 LRR_5: Leucine rich r 96.2 0.0098 2.1E-07 55.1 6.2 81 599-682 10-90 (129)
68 PF13306 LRR_5: Leucine rich r 96.2 0.014 3E-07 54.1 7.0 55 401-459 75-129 (129)
69 KOG1947 Leucine rich repeat pr 96.0 0.0015 3.3E-08 76.4 -0.6 115 121-235 186-307 (482)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0041 8.9E-08 37.1 1.1 19 842-861 2-20 (22)
71 KOG2123 Uncharacterized conser 95.8 0.00053 1.2E-08 68.6 -4.3 61 147-212 18-78 (388)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.005 1.1E-07 36.7 0.8 19 818-837 2-20 (22)
73 KOG1947 Leucine rich repeat pr 95.4 0.0034 7.5E-08 73.4 -0.7 223 117-366 208-439 (482)
74 KOG4308 LRR-containing protein 93.4 0.00091 2E-08 75.9 -11.0 163 573-735 115-303 (478)
75 KOG0473 Leucine-rich repeat pr 93.1 0.0035 7.6E-08 61.3 -5.9 83 792-877 42-124 (326)
76 KOG4308 LRR-containing protein 92.4 0.0029 6.3E-08 71.9 -8.9 38 385-422 264-305 (478)
77 PF13504 LRR_7: Leucine rich r 90.9 0.12 2.7E-06 28.5 1.0 9 843-851 4-12 (17)
78 KOG3864 Uncharacterized conser 88.8 0.077 1.7E-06 51.4 -1.4 85 280-364 101-186 (221)
79 smart00370 LRR Leucine-rich re 85.0 0.6 1.3E-05 29.0 1.6 14 840-853 2-15 (26)
80 smart00369 LRR_TYP Leucine-ric 85.0 0.6 1.3E-05 29.0 1.6 14 840-853 2-15 (26)
81 KOG0473 Leucine-rich repeat pr 81.4 0.089 1.9E-06 51.8 -4.8 61 792-854 65-125 (326)
82 smart00370 LRR Leucine-rich re 80.5 1.7 3.6E-05 27.0 2.3 18 224-241 3-20 (26)
83 smart00369 LRR_TYP Leucine-ric 80.5 1.7 3.6E-05 27.0 2.3 18 224-241 3-20 (26)
84 KOG3864 Uncharacterized conser 78.5 0.58 1.3E-05 45.5 -0.4 36 148-183 101-136 (221)
85 PF13516 LRR_6: Leucine Rich r 75.6 0.94 2E-05 27.5 0.1 18 722-739 2-19 (24)
86 KOG4242 Predicted myosin-I-bin 72.9 20 0.00043 39.9 9.2 18 303-320 164-181 (553)
87 smart00365 LRR_SD22 Leucine-ri 70.3 3.6 7.7E-05 25.7 1.7 16 172-187 2-17 (26)
88 smart00364 LRR_BAC Leucine-ric 68.7 3.3 7.2E-05 25.7 1.3 16 817-833 3-18 (26)
89 smart00368 LRR_RI Leucine rich 58.4 7.2 0.00016 24.8 1.6 13 841-853 3-15 (28)
90 KOG4242 Predicted myosin-I-bin 50.8 48 0.001 37.1 7.2 19 528-546 164-182 (553)
91 PF08693 SKG6: Transmembrane a 37.4 52 0.0011 23.0 3.2 22 930-951 12-33 (40)
92 TIGR00864 PCC polycystin catio 34.4 21 0.00045 48.9 1.7 34 822-855 1-34 (2740)
93 PF15102 TMEM154: TMEM154 prot 34.3 42 0.00092 31.0 3.2 17 943-959 72-88 (146)
94 KOG3763 mRNA export factor TAP 33.5 25 0.00053 40.1 1.9 65 220-295 215-285 (585)
95 smart00367 LRR_CC Leucine-rich 30.2 38 0.00083 20.9 1.6 15 329-343 2-16 (26)
96 PF04478 Mid2: Mid2 like cell 28.5 60 0.0013 30.3 3.2 17 930-946 49-65 (154)
97 KOG3763 mRNA export factor TAP 28.4 27 0.00059 39.8 1.2 39 245-290 216-254 (585)
98 PF07172 GRP: Glycine rich pro 23.7 70 0.0015 27.5 2.5 20 1-24 1-20 (95)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.9e-71 Score=697.18 Aligned_cols=609 Identities=36% Similarity=0.576 Sum_probs=413.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceecc
Q 042359 1 MAMKPNTSAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCD 80 (979)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~ 80 (979)
||.|-..|..+.+.++++ +.+..+ . -+++|++||++||+++.+|.+.+.+|+.+.+||.|.||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~--~-----------~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~ 66 (968)
T PLN00113 1 MAKKGPQHCPYLIFMLFF-LFLNFS--M-----------LHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCN 66 (968)
T ss_pred CCCCCCCCCChHHHHHHH-HHHHcc--C-----------CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecC
Confidence 888876666664322222 222211 1 13689999999999998888889999888899999999997
Q ss_pred CCCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCCCcccccc-CCCCCCEEEcCCCC
Q 042359 81 NITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFG-SMGNLRYLNLSRTR 159 (979)
Q Consensus 81 ~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~-~l~~L~~L~Ls~n~ 159 (979)
+ .++|+.|||++ +.+.|.+++++..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|+
T Consensus 67 ~-~~~v~~L~L~~---------------~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~ 129 (968)
T PLN00113 67 N-SSRVVSIDLSG---------------KNISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNN 129 (968)
T ss_pred C-CCcEEEEEecC---------------CCccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCc
Confidence 5 57999999998 478888888999999999999999999874 776554 89999999999999
Q ss_pred CCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCC
Q 042359 160 IGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFS 239 (979)
Q Consensus 160 i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 239 (979)
+++.+|. +.+++|++|++++|.+ ++..
T Consensus 130 l~~~~p~--~~l~~L~~L~Ls~n~~---------------------------------------------------~~~~ 156 (968)
T PLN00113 130 FTGSIPR--GSIPNLETLDLSNNML---------------------------------------------------SGEI 156 (968)
T ss_pred cccccCc--cccCCCCEEECcCCcc---------------------------------------------------cccC
Confidence 8877774 3455566655555533 2233
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccc
Q 042359 240 LLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGT 319 (979)
Q Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 319 (979)
+..++.+++|++|++++|.+. +.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLV---------GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred ChHHhcCCCCCEEECccCccc---------ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 334455555555555555554 44555555666666666666666555565566666666666666665554
Q ss_pred cCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCcccc
Q 042359 320 IDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHL 399 (979)
Q Consensus 320 i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 399 (979)
+ |..++++++|++|++++| .+.+.+|..+.++++|++|++++|.+. +.+
T Consensus 228 ~-p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~-----------------------------~~~ 276 (968)
T PLN00113 228 I-PYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLS-----------------------------GPI 276 (968)
T ss_pred C-ChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeee-----------------------------ccC
Confidence 4 555556666666666665 555555555555555555544444443 334
Q ss_pred ccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCc
Q 042359 400 TDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP 479 (979)
Q Consensus 400 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 479 (979)
|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.++. .+..+++|
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L--------------------- 334 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRL--------------------- 334 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCC---------------------
Confidence 44555666777777777777766777677777777777777776644432 22222222
Q ss_pred ccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEe
Q 042359 480 FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSV 559 (979)
Q Consensus 480 ~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l 559 (979)
+.|++++|.+.+..|..+
T Consensus 335 ---------------------------~~L~L~~n~l~~~~p~~l----------------------------------- 352 (968)
T PLN00113 335 ---------------------------QVLQLWSNKFSGEIPKNL----------------------------------- 352 (968)
T ss_pred ---------------------------CEEECcCCCCcCcCChHH-----------------------------------
Confidence 222222222221111111
Q ss_pred ecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccc
Q 042359 560 YSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTG 639 (979)
Q Consensus 560 ~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 639 (979)
+.+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+
T Consensus 353 --------------------------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 353 --------------------------------------GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred --------------------------------------hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 112333333333333333444444444455555555555555
Q ss_pred cCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCcccc
Q 042359 640 NLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC 719 (979)
Q Consensus 640 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 719 (979)
.+|..+..+++|+.|++++|++++.+|..+.++++|+.|++++|.+++.+|..+. .+++|+.|++++|++.+.+|..+
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~- 472 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF- 472 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-
Confidence 5555555555555555555555555555555555555555555555555555444 45566666666666665555544
Q ss_pred CCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEec
Q 042359 720 DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDI 799 (979)
Q Consensus 720 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdL 799 (979)
..++|+.|++++|++++.+|..+.+++.| +.|+|
T Consensus 473 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L 506 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAVPRKLGSLSEL----------------------------------------------MQLKL 506 (968)
T ss_pred ccccceEEECcCCccCCccChhhhhhhcc----------------------------------------------CEEEC
Confidence 34778899999999988888888776665 78999
Q ss_pred ccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359 800 SRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK 879 (979)
Q Consensus 800 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 879 (979)
++|++++.+|..++++++|++|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++||+++|+++|.
T Consensus 507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred cCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCccccccCCC-CCCCCC
Q 042359 880 IPSSTQLQSFDVSSFAGN-DLCGAP 903 (979)
Q Consensus 880 ip~~~~~~~~~~~~~~~n-~lcg~~ 903 (979)
+|..+++.++...+|.|| .+||.+
T Consensus 587 ~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 587 LPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999 799865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.7e-56 Score=559.60 Aligned_cols=515 Identities=33% Similarity=0.511 Sum_probs=378.8
Q ss_pred CCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcccc-CCCCCCEEeccCCcCcccCchhhc
Q 042359 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ-NLTSLRHLGLDSNHFNSSIPNWLY 301 (979)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~ 301 (979)
.+++.|++++|.+++..+..+..+++|+.|++++|+++ +.+|..+. .+++|++|++++|++++.+|. +
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~ 137 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS---------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--G 137 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC---------CcCChHHhccCCCCCEEECcCCccccccCc--c
Confidence 34566666666666666666666667777777766665 45555543 666666777666666665554 3
Q ss_pred cCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccc
Q 042359 302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCV 381 (979)
Q Consensus 302 ~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 381 (979)
.+++|++|++++|.+.+.+ |..++++++|++|++++| .+.+.+|..+.++++|++|++++|.+.+.+|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---------- 205 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIP---------- 205 (968)
T ss_pred ccCCCCEEECcCCcccccC-ChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCC----------
Confidence 4566666666666666555 555666666666666666 5555666666666665555555555554444
Q ss_pred cCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEE
Q 042359 382 SNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF 461 (979)
Q Consensus 382 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 461 (979)
..++.+++|++|++++|.+.+.+|..++++++|++|++++|++.+.+|. .+.++++|+.|
T Consensus 206 -------------------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L 265 (968)
T PLN00113 206 -------------------RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYL 265 (968)
T ss_pred -------------------hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEE
Confidence 3444445555555555555555555555555555555555555444443 34455555444
Q ss_pred EccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcC
Q 042359 462 RVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI 541 (979)
Q Consensus 462 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l 541 (979)
++++|.+.. .+|.++..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+
T Consensus 266 ~L~~n~l~~------------------------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 266 FLYQNKLSG------------------------PIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNF 320 (968)
T ss_pred ECcCCeeec------------------------cCchhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCcc
Confidence 444443321 234445555666666666666665555443 2333444444444443
Q ss_pred CCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccc
Q 042359 542 HGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW 621 (979)
Q Consensus 542 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 621 (979)
. +.+|..+ ..+++|+.|++++|.+.+.+|..+
T Consensus 321 ~--------------------------------------------~~~~~~~----~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 321 T--------------------------------------------GKIPVAL----TSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred C--------------------------------------------CcCChhH----hcCCCCCEEECcCCCCcCcCChHH
Confidence 3 3333322 336788888999999988999999
Q ss_pred cCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccc
Q 042359 622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMV 701 (979)
Q Consensus 622 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ 701 (979)
..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .+++|+
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~ 431 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVY 431 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 799999
Q ss_pred eeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeec
Q 042359 702 VLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSK 781 (979)
Q Consensus 702 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (979)
.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..++ .
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~------------------------------------ 474 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S------------------------------------ 474 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c------------------------------------
Confidence 999999999999999999999999999999999988887542 1
Q ss_pred CccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCC
Q 042359 782 GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMS 861 (979)
Q Consensus 782 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~ 861 (979)
..|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|||++|+++|.+|..++
T Consensus 475 ----------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 475 ----------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred ----------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 2348999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEccCCcccccCCCC-ccCCCccccccCCCCCCC
Q 042359 862 SLTFLNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCG 901 (979)
Q Consensus 862 ~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~lcg 901 (979)
.+++|+.|||++|+++|.+|.. ..+..+...++++|.+.|
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999964 345566667788886655
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-35 Score=312.91 Aligned_cols=366 Identities=24% Similarity=0.255 Sum_probs=189.5
Q ss_pred CCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEc
Q 042359 125 LSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDL 204 (979)
Q Consensus 125 L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l 204 (979)
-+.||+++|.++.+ -+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|.++.... ++.++.|+.|||
T Consensus 80 t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhh
Confidence 34566666666655 3555566666666666666665 45555555555666666666665554332 455555555555
Q ss_pred cCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCE
Q 042359 205 RSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRH 284 (979)
Q Consensus 205 ~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~ 284 (979)
|.|.++.++. ..+..-.++++|+|++|.|+.+....|..+.+|.+|.|+.|+++.+ -+..|.++++|+.
T Consensus 157 SrN~is~i~~--~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL---------p~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 157 SRNLISEIPK--PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL---------PQRSFKRLPKLES 225 (873)
T ss_pred hhchhhcccC--CCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc---------CHHHhhhcchhhh
Confidence 5555555422 1222334555555555555555555555555555555555555521 1233444555555
Q ss_pred EeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCc
Q 042359 285 LGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364 (979)
Q Consensus 285 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n 364 (979)
|+|..|++.-.---.|.++++|+.|.+..|.+. .++...|..+.++++|+|+.| .++..-..++.++++|+.|+++.|
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchh
Confidence 555555554222334455555555555555555 333445555555555555555 555444555555555555555555
Q ss_pred cCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 042359 365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLN 444 (979)
Q Consensus 365 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 444 (979)
.+....+. .+...++ |+.|+|+.|+++...+..|..+..|++|+|++|.+...-..+|..+++|++|||++|.+.
T Consensus 304 aI~rih~d----~Wsftqk-L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 304 AIQRIHID----SWSFTQK-LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred hhheeecc----hhhhccc-ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 55444333 3333333 555555555555555555555555555555555555444444555555555555555554
Q ss_pred cccCh--hhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEcc
Q 042359 445 GTLSA--IHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLV 512 (979)
Q Consensus 445 ~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls 512 (979)
+.+.. ..|.++++|+.|++.+|++..+...+|..+..|+.|++.+|.+...-|..|..+ .|++|-+.
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 43322 234455555555555555555544444444444444444444444444444444 44444443
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=322.89 Aligned_cols=455 Identities=24% Similarity=0.370 Sum_probs=222.8
Q ss_pred CCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCccccc
Q 042359 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA 351 (979)
Q Consensus 272 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~ 351 (979)
+|++++.+..++.++.++|++. .+|+.++.+.+|+.++.++|.+. .+ ++.++.+..|+.++..+| ++. ..|+.+.
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el-~~~i~~~~~l~dl~~~~N-~i~-slp~~~~ 157 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-EL-PDSIGRLLDLEDLDATNN-QIS-SLPEDMV 157 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ec-CchHHHHhhhhhhhcccc-ccc-cCchHHH
Confidence 3444444444444444444443 33444444444444444444443 23 334444444444444444 332 2333344
Q ss_pred CCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCC
Q 042359 352 SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLS 431 (979)
Q Consensus 352 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 431 (979)
++.++..+++.+|++....|. .+. +.. |++||...|-+ +.+|..++.+.+|..|++..|++. ..| .|.+|.
T Consensus 158 ~~~~l~~l~~~~n~l~~l~~~----~i~-m~~-L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs 228 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLKALPEN----HIA-MKR-LKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCS 228 (565)
T ss_pred HHHHHHHhhccccchhhCCHH----HHH-HHH-HHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccH
Confidence 444444444444444333332 111 111 44444444433 245556666666667777777666 334 466666
Q ss_pred CCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEc
Q 042359 432 TLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL 511 (979)
Q Consensus 432 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L 511 (979)
.|+++.+..|+|. .+|+....+++++..||+.+|+++ ++|+.+.-+++|++||+
T Consensus 229 ~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-------------------------e~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 229 LLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-------------------------EVPDEICLLRSLERLDL 282 (565)
T ss_pred HHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------------------------cCchHHHHhhhhhhhcc
Confidence 6777777766665 566655566666666666666655 34444444444444444
Q ss_pred cCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCCh
Q 042359 512 VNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISP 591 (979)
Q Consensus 512 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 591 (979)
++|.+++..+. .+.+ .|+.|.+.+|.+...-.++-. +.....+..|+. .+..-.++..-
T Consensus 283 SNN~is~Lp~s--Lgnl-hL~~L~leGNPlrTiRr~ii~---------------~gT~~vLKyLrs-~~~~dglS~se-- 341 (565)
T KOG0472|consen 283 SNNDISSLPYS--LGNL-HLKFLALEGNPLRTIRREIIS---------------KGTQEVLKYLRS-KIKDDGLSQSE-- 341 (565)
T ss_pred cCCccccCCcc--cccc-eeeehhhcCCchHHHHHHHHc---------------ccHHHHHHHHHH-hhccCCCCCCc--
Confidence 44444443322 1222 344444444433211000000 000000000000 00000000000
Q ss_pred hhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCC---CccEEEcCCcccccccccc
Q 042359 592 FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLT---SLVWLHLGENRLSGNILVS 668 (979)
Q Consensus 592 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~L~~n~l~~~~p~~ 668 (979)
-.+-..-+. ..+..| ......+.+.|++++-+++ .+|....... -....+++.|++. ++|..
T Consensus 342 --------~~~e~~~t~----~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~ 406 (565)
T KOG0472|consen 342 --------GGTETAMTL----PSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKR 406 (565)
T ss_pred --------ccccccCCC----CCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhh
Confidence 000000000 000111 1112234444555554444 3343222111 2445555555555 45554
Q ss_pred ccCCCCCCE-EeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhccc
Q 042359 669 LKNCTALES-LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG 747 (979)
Q Consensus 669 l~~l~~L~~-L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 747 (979)
+..++.+.+ +.+++|.+ +-+|..+. .+++|..|+|++|.+. .+|..++.+..|+.||+|.|+|. .+|+++..+..
T Consensus 407 L~~lkelvT~l~lsnn~i-sfv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKI-SFVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred hHHHHHHHHHHHhhcCcc-ccchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence 444444433 23333333 24444444 5666666666666555 56777777777888888888886 77777665444
Q ss_pred CcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCc
Q 042359 748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNS 827 (979)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 827 (979)
+ +.+-.++|++...-|..+.++.+|+.|||.+|.
T Consensus 483 l----------------------------------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 483 L----------------------------------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred H----------------------------------------------HHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 3 344455677775555558889999999999999
Q ss_pred ceeccCCCCCccCCCCEEECcCCccc
Q 042359 828 FTGRIPESIGVMRSLESIDFSANQLS 853 (979)
Q Consensus 828 l~~~ip~~~~~l~~L~~LdLs~N~l~ 853 (979)
+. .||..+|++++|+.|+|++|.+.
T Consensus 517 lq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hh-hCChhhccccceeEEEecCCccC
Confidence 98 88889999999999999999987
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=314.22 Aligned_cols=477 Identities=25% Similarity=0.365 Sum_probs=300.3
Q ss_pred CCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccc
Q 042359 247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG 326 (979)
Q Consensus 247 ~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~ 326 (979)
..|+.+.+++|.+.. +-+.+.++..|.+|++.+|++. ..|++++.+..++.++.++|+++ .+ |+.++
T Consensus 45 v~l~~lils~N~l~~----------l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~l-p~~i~ 111 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV----------LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-EL-PEQIG 111 (565)
T ss_pred cchhhhhhccCchhh----------ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hc-cHHHh
Confidence 456666667776653 3345566677777777777765 45666777777777777777776 55 66677
Q ss_pred ccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCC
Q 042359 327 NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQF 406 (979)
Q Consensus 327 ~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 406 (979)
.+.+|..++.++| .+. ..|+.++.+..+..++..+|++... |..+.++
T Consensus 112 s~~~l~~l~~s~n-~~~-el~~~i~~~~~l~dl~~~~N~i~sl------------------------------p~~~~~~ 159 (565)
T KOG0472|consen 112 SLISLVKLDCSSN-ELK-ELPDSIGRLLDLEDLDATNNQISSL------------------------------PEDMVNL 159 (565)
T ss_pred hhhhhhhhhcccc-cee-ecCchHHHHhhhhhhhccccccccC------------------------------chHHHHH
Confidence 7777777777776 444 3455555555555555555555433 3344444
Q ss_pred CCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEe
Q 042359 407 KNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALG 486 (979)
Q Consensus 407 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 486 (979)
.++..+++.+|+++...|..+. ++.|++||...|-+. .+|+ .++.+.+|+.|++..|++..
T Consensus 160 ~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~---------------- 220 (565)
T KOG0472|consen 160 SKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIRF---------------- 220 (565)
T ss_pred HHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCCh-hhcchhhhHHHHhhhccccc----------------
Confidence 5555555555555544333332 555555555555543 4444 35555555555555555442
Q ss_pred cccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCC
Q 042359 487 LRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSG 566 (979)
Q Consensus 487 l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~ 566 (979)
+| .|.+|..|++++++.|++.- .|......++++.+||+.+|++...+..+..+
T Consensus 221 ---------lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke~Pde~clL--------------- 274 (565)
T KOG0472|consen 221 ---------LP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL--------------- 274 (565)
T ss_pred ---------CC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccccCchHHHHh---------------
Confidence 12 23344445555555555433 34455556667777777777776544444333
Q ss_pred CCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccC-----CCCCCE----EEccCCcc
Q 042359 567 PLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMS-----YQNLKT----LKLSNNKF 637 (979)
Q Consensus 567 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~----L~Ls~N~l 637 (979)
.+|++||+|+|.+++..+ .++++ .|+.|.+.+|.+...--+.+.. ++.|+. =.++.-.-
T Consensus 275 ------rsL~rLDlSNN~is~Lp~-----sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 275 ------RSLERLDLSNNDISSLPY-----SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred ------hhhhhhcccCCccccCCc-----ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 345555555555554322 23445 6777788888764211100000 001111 00111100
Q ss_pred ----cccCC-c---ccCCCCCccEEEcCCccccccccccccCCCC---CCEEeccCCcccccCChhHHHhhhccceeecc
Q 042359 638 ----TGNLP-Y---SMGSLTSLVWLHLGENRLSGNILVSLKNCTA---LESLDVGENEFVGNIPTWIGERFSRMVVLILR 706 (979)
Q Consensus 638 ----~~~~p-~---~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~ 706 (979)
.+..| . ....+.+.+.|++++-+++ .+|........ ....++++|++. ++|..+. .+..+...-+.
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~l 419 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLVL 419 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHHh
Confidence 01111 1 1233557888899888888 45654443333 678999999997 8898776 45555554444
Q ss_pred CCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccch
Q 042359 707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVD 786 (979)
Q Consensus 707 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (979)
.|+..+.+|..++.++.|..|++++|.+. .+|..++.+..|
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-------------------------------------- 460 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-------------------------------------- 460 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh--------------------------------------
Confidence 44444478888999999999999998875 788887766555
Q ss_pred hhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCC
Q 042359 787 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFL 866 (979)
Q Consensus 787 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L 866 (979)
+.||||+|+|. .+|..+..+..++.+-.++|++....|+.++++.+|..|||.+|.+. .||..+++|++|
T Consensus 461 --------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL 530 (565)
T KOG0472|consen 461 --------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL 530 (565)
T ss_pred --------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce
Confidence 89999999998 89999988888888888889999666666999999999999999998 799999999999
Q ss_pred CEEEccCCccc
Q 042359 867 NHLNLSNNNLT 877 (979)
Q Consensus 867 ~~L~ls~N~l~ 877 (979)
++|++++|+|.
T Consensus 531 ~hLeL~gNpfr 541 (565)
T KOG0472|consen 531 RHLELDGNPFR 541 (565)
T ss_pred eEEEecCCccC
Confidence 99999999998
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-34 Score=305.16 Aligned_cols=374 Identities=19% Similarity=0.216 Sum_probs=298.8
Q ss_pred cccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCc
Q 042359 380 CVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459 (979)
Q Consensus 380 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 459 (979)
.++..-+.|++++|++...-+..|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.|. ++....+..++.|+
T Consensus 75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alr 152 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALR 152 (873)
T ss_pred cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhh
Confidence 34444778999999999888889999999999999999998 56775555667999999999998 77777899999999
Q ss_pred EEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccC
Q 042359 460 WFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQN 539 (979)
Q Consensus 460 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n 539 (979)
.||++.|.+..+....|..-.++++|++++|.++..-.+.|.++.+|..|.|++|+++...+..| ..+++|+.|+|..|
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHh-hhcchhhhhhcccc
Confidence 99999999998888777776777777777777777666666677777777777777766544333 44566666666666
Q ss_pred cCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCc
Q 042359 540 QIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPD 619 (979)
Q Consensus 540 ~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~ 619 (979)
++.-. +. -.|..+++|+.|.|..|++...-..
T Consensus 232 ~iriv----------------------------------------------e~--ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 232 RIRIV----------------------------------------------EG--LTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred ceeee----------------------------------------------hh--hhhcCchhhhhhhhhhcCcccccCc
Confidence 55311 00 0234467788888888888766667
Q ss_pred cccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhc
Q 042359 620 CWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSR 699 (979)
Q Consensus 620 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~ 699 (979)
.|..+.++++|+|+.|+++..-..++.+++.|+.|++++|.+...-++++..+++|++|+|++|+++ .+++.-+..+..
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQ 342 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHH
Confidence 8888999999999999999777888999999999999999999888999999999999999999998 566655558999
Q ss_pred cceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359 700 MVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV 779 (979)
Q Consensus 700 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (979)
|+.|+|++|.+...-...|..+++|+.|||++|.++..|.+.-.-
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~----------------------------------- 387 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA----------------------------------- 387 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh-----------------------------------
Confidence 999999999998776777888999999999999998766542111
Q ss_pred ecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcC
Q 042359 780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSA 849 (979)
Q Consensus 780 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~ 849 (979)
|.+ ++.|+.|+|.+|++....-..|..+.+|+.|||.+|.|...-|.+|..+ .|+.|-++.
T Consensus 388 -------f~g-l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 388 -------FNG-LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred -------hcc-chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 111 4456889999999985555788899999999999999998889999888 888877654
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-36 Score=333.55 Aligned_cols=244 Identities=27% Similarity=0.406 Sum_probs=202.4
Q ss_pred CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL 651 (979)
Q Consensus 572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 651 (979)
+.+|+++++++|++++. |.+++ .+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. .+|.....+++|
T Consensus 240 p~nl~~~dis~n~l~~l-p~wi~----~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL 312 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNL-PEWIG----ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL 312 (1081)
T ss_pred cccceeeecchhhhhcc-hHHHH----hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence 46788888888888754 46554 4899999999999995 78888888999999999999998 677788889999
Q ss_pred cEEEcCCccccccccc-cccCCC-CCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEc
Q 042359 652 VWLHLGENRLSGNILV-SLKNCT-ALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDI 729 (979)
Q Consensus 652 ~~L~L~~n~l~~~~p~-~l~~l~-~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 729 (979)
++|+|..|++.. +|+ .+.-.. +|+.|+.+.|++. ..|..-.+..+.|+.|.+.+|.++...-+.+.+.++|+.|+|
T Consensus 313 ~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeehhccccc-cchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 999999999984 554 333333 3778888888887 566555557889999999999999888788899999999999
Q ss_pred cCCccccccCc-chhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccc
Q 042359 730 ADNNLSGAIPN-CINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 808 (979)
Q Consensus 730 s~n~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i 808 (979)
++|++. .+|. ++.++..| +.|+||+|+++ .+
T Consensus 391 syNrL~-~fpas~~~kle~L----------------------------------------------eeL~LSGNkL~-~L 422 (1081)
T KOG0618|consen 391 SYNRLN-SFPASKLRKLEEL----------------------------------------------EELNLSGNKLT-TL 422 (1081)
T ss_pred cccccc-cCCHHHHhchHHh----------------------------------------------HHHhcccchhh-hh
Confidence 999996 5554 45554444 88999999999 89
Q ss_pred cccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc-CCCCCCCCCCCCEEEccCCc
Q 042359 809 PLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE-IPESMSSLTFLNHLNLSNNN 875 (979)
Q Consensus 809 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~ls~N~ 875 (979)
|.++.++..|++|...+|++. ..| .+.++++|+.+|+|.|+|+.. +|..... +.|++|||++|.
T Consensus 423 p~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 999999999999999999999 778 799999999999999999865 4444333 899999999997
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-33 Score=314.63 Aligned_cols=399 Identities=24% Similarity=0.323 Sum_probs=278.7
Q ss_pred ccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCccc
Q 042359 402 QLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQ 481 (979)
Q Consensus 402 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 481 (979)
...++.+|+++.|.+|.+. ..|..+..+++|++|+++.|++. .+|. .+..+..++++..++|...... +...
T Consensus 86 s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~l-----g~~~ 157 (1081)
T KOG0618|consen 86 SCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQRL-----GQTS 157 (1081)
T ss_pred hhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhhh-----cccc
Confidence 3445555666666655555 44555666666666666666664 4444 4555555666666666111000 0111
Q ss_pred ccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeec
Q 042359 482 LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYS 561 (979)
Q Consensus 482 L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~ 561 (979)
++.+++..+.+.+.++.....+++ .|+|++|.+... -...+.+|+.+....|++...
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~----dls~~~~l~~l~c~rn~ls~l----------------- 214 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL----DLSNLANLEVLHCERNQLSEL----------------- 214 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhhhh----hhhhccchhhhhhhhcccceE-----------------
Confidence 444555555555555554444444 466666655411 112334444444444443311
Q ss_pred ccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccC
Q 042359 562 NNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL 641 (979)
Q Consensus 562 n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 641 (979)
....++++.|+.++|.+....+... ..+|+.++++.|+++ .+|++++.+.+|+.++..+|+++ .+
T Consensus 215 -------~~~g~~l~~L~a~~n~l~~~~~~p~------p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~l 279 (1081)
T KOG0618|consen 215 -------EISGPSLTALYADHNPLTTLDVHPV------PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-AL 279 (1081)
T ss_pred -------EecCcchheeeeccCcceeeccccc------cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hh
Confidence 1113578888888888774333222 468999999999999 56799999999999999999996 78
Q ss_pred CcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhc-cceeeccCCcccCCCCccccC
Q 042359 642 PYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSR-MVVLILRSNKFHGPLPTGLCD 720 (979)
Q Consensus 642 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~ 720 (979)
|..+...++|+.|.+.+|.+. .+|......++|++|+|..|++. .+|+.++..... |+.|+.+.|++....--+=..
T Consensus 280 p~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 988889999999999999998 57778888999999999999997 788766544443 788888888887433222234
Q ss_pred CCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecc
Q 042359 721 LAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDIS 800 (979)
Q Consensus 721 l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs 800 (979)
.+.|+.|.+.+|.++...=+.+.+ +..|+.|+|+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~----------------------------------------------~~hLKVLhLs 391 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVN----------------------------------------------FKHLKVLHLS 391 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhcc----------------------------------------------ccceeeeeec
Confidence 577999999999987543222222 3456999999
Q ss_pred cCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc-c
Q 042359 801 RNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG-K 879 (979)
Q Consensus 801 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g-~ 879 (979)
+|++.......+.++..|+.|+||+|+++ .+|.++.++..|++|...+|++. ..| ++..+++|+++|||.|+|+- .
T Consensus 392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence 99999444456789999999999999999 89999999999999999999999 677 88999999999999999984 5
Q ss_pred CCCCccCCCccccccCCC
Q 042359 880 IPSSTQLQSFDVSSFAGN 897 (979)
Q Consensus 880 ip~~~~~~~~~~~~~~~n 897 (979)
+|....-.++...++.||
T Consensus 469 l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhhhCCCcccceeeccCC
Confidence 555444356666677888
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-31 Score=285.50 Aligned_cols=362 Identities=25% Similarity=0.358 Sum_probs=192.4
Q ss_pred CCCCcEEeccCCcCc-ccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccE
Q 042359 406 FKNIVTLDFANNSIV-GLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA 484 (979)
Q Consensus 406 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 484 (979)
++-.+-.|+++|.++ +..|....++++++.|.|...++. .+|. .++.+.+|+.|.+++|.+..
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~-------------- 69 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLIS-------------- 69 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHh--------------
Confidence 455677888888888 567888888888888888888875 5665 67888888888888887763
Q ss_pred EecccccCCCCCChhhhCCCCccEEEccCCCCCCC-CchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeeccc
Q 042359 485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDI-FPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNN 563 (979)
Q Consensus 485 L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~ 563 (979)
+-+.+..++.|+.+.+..|++... +|..++ .+..|..||||+|++...+..+...+++-.|++++|+
T Consensus 70 -----------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 70 -----------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN 137 (1255)
T ss_pred -----------hhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc
Confidence 223355567777777777776432 233332 3566777777777776554455555555555555555
Q ss_pred CCCCCCcc---CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCccc-c
Q 042359 564 MSGPLPLI---SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFT-G 639 (979)
Q Consensus 564 l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~ 639 (979)
+....-.. +..|-.||||+|++....| .+. .+..|++|+|++|.+.-..-..+..+++|+.|.+++.+-+ .
T Consensus 138 IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~R----RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 138 IETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIR----RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred cccCCchHHHhhHhHhhhccccchhhhcCH-HHH----HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence 54332222 2333444455544432222 211 1344444444444433221122223344444444443322 2
Q ss_pred cCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCcccc
Q 042359 640 NLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC 719 (979)
Q Consensus 640 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 719 (979)
.+|.++..+.+|..+|++.|.+. ..|+.+-++.+|+.|+||+|+++ .+....+ ...+|+.|+++.|+++ .+|..++
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHh
Confidence 34444444444444444444444 34444444444444444444444 3332222 2344444444444444 4444444
Q ss_pred CCCCccEEEccCCccc-cccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEe
Q 042359 720 DLAFLQILDIADNNLS-GAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMID 798 (979)
Q Consensus 720 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ld 798 (979)
.++.|+.|.+.+|+++ .-||..|+.+.+| +.+.
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~L----------------------------------------------evf~ 322 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQL----------------------------------------------EVFH 322 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhh----------------------------------------------HHHH
Confidence 4444444444444443 1234444443333 3444
Q ss_pred cccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcc
Q 042359 799 ISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQL 852 (979)
Q Consensus 799 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l 852 (979)
.++|++. ..|+.+..|..|+.|.|++|++- .+|+++.-|+.|+.|||..|.-
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 5555555 55555555555555555555555 5555555555555555555543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=5.4e-31 Score=280.15 Aligned_cols=369 Identities=25% Similarity=0.379 Sum_probs=228.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCC
Q 042359 120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL 199 (979)
Q Consensus 120 ~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 199 (979)
+-|+..|-.|+++|.+++...|.....++.++.|.|...++. .+|+.++.|.+|++|.+++|++..+.+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG---------- 72 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG---------- 72 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh----------
Confidence 346677888999999997778999999999999999999887 789999999999999999988765543
Q ss_pred CEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCC-ChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC
Q 042359 200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHF-SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN 278 (979)
Q Consensus 200 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~ 278 (979)
.+..++.|+.+.+..|++... +|..+-.+..|+.||||+|++.+ +|..+..
T Consensus 73 ------------------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E----------vP~~LE~ 124 (1255)
T KOG0444|consen 73 ------------------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE----------VPTNLEY 124 (1255)
T ss_pred ------------------hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh----------cchhhhh
Confidence 233445555555555544322 23455566777777777777643 6666666
Q ss_pred CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCe
Q 042359 279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358 (979)
Q Consensus 279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~ 358 (979)
-+++-.|+|++|+|..+.-+.+.+++.|-+|+|++|++. .+ |..+..+.+|++|+|++| .+...-...+..+++|+.
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L-PPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML-PPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc-CHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhh
Confidence 667777777777776443344456666677777777665 44 555666666666676666 333221222223333333
Q ss_pred eeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEc
Q 042359 359 LNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRI 438 (979)
Q Consensus 359 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 438 (979)
|.+++.+-+ ..-+|..+..+.+|..+|++.|++. ..|+.+-++++|+.|+|
T Consensus 202 Lhms~TqRT----------------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 202 LHMSNTQRT----------------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhcccccch----------------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheecc
Confidence 333332211 1235556677777777777777776 56777777777777777
Q ss_pred CCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCC
Q 042359 439 NDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD 518 (979)
Q Consensus 439 ~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~ 518 (979)
++|+|+ .+.. ....-.+|+.|+++.|+++ .+|+.+..+
T Consensus 253 S~N~it-eL~~-~~~~W~~lEtLNlSrNQLt-------------------------~LP~avcKL--------------- 290 (1255)
T KOG0444|consen 253 SGNKIT-ELNM-TEGEWENLETLNLSRNQLT-------------------------VLPDAVCKL--------------- 290 (1255)
T ss_pred CcCcee-eeec-cHHHHhhhhhhccccchhc-------------------------cchHHHhhh---------------
Confidence 777776 3332 2233344555555555444 334444444
Q ss_pred CCchHHHhcCCCccEEEcccCcCC--CCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhc
Q 042359 519 IFPIRFLKSASQLKFLDLGQNQIH--GPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYR 596 (979)
Q Consensus 519 ~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 596 (979)
+.|+.|.+.+|+++ |.+..+
T Consensus 291 ----------~kL~kLy~n~NkL~FeGiPSGI------------------------------------------------ 312 (1255)
T KOG0444|consen 291 ----------TKLTKLYANNNKLTFEGIPSGI------------------------------------------------ 312 (1255)
T ss_pred ----------HHHHHHHhccCcccccCCccch------------------------------------------------
Confidence 44444555444443 111122
Q ss_pred ccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccc
Q 042359 597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS 662 (979)
Q Consensus 597 l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 662 (979)
+.+..|+.+...+|.+. .+|+.++.|..|+.|.|+.|++. .+|+.+.-++.|+.||+..|.-.
T Consensus 313 -GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 313 -GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 33445555555555554 56666777777777777777766 56777777777777777776644
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1e-24 Score=221.90 Aligned_cols=224 Identities=24% Similarity=0.312 Sum_probs=151.0
Q ss_pred ccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCC
Q 042359 597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALE 676 (979)
Q Consensus 597 l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 676 (979)
|..++.|+.|++++|++++.-+.+|.+...+++|.|..|++...-...|.++.+|+.|+|++|+++...|..|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 56789999999999999998899999999999999999999866677889999999999999999999999999999999
Q ss_pred EEeccCCcccccC-ChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccc---cccCcchhhcccCcccc
Q 042359 677 SLDVGENEFVGNI-PTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS---GAIPNCINNLTGMVTAC 752 (979)
Q Consensus 677 ~L~L~~N~l~~~i-p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~l~~~~ 752 (979)
+|++-.|++.... -.|+++- ++.+...|..|- +.-..++.++++++.+. ...|++.+-.++-
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~W--------lr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~---- 415 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEW--------LRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSS---- 415 (498)
T ss_pred eeehccCcccCccchHHHHHH--------HhhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCC----
Confidence 9999999886543 2444432 223332222221 12234555666655442 1223222111110
Q ss_pred cccccccccCCCCcccceeeeeeeEEeecCccchhhhhccce-eEEecccCcccccccccccCCCCCCEEeCCCCcceec
Q 042359 753 SFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLV-RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR 831 (979)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 831 (979)
.-|.+ .+-+ +...-|++.+. .+|..+- ..-++|++.+|.++ .
T Consensus 416 --------~cP~~-------------------------c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~ 458 (498)
T KOG4237|consen 416 --------PCPPP-------------------------CTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-S 458 (498)
T ss_pred --------CCCCC-------------------------cchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-c
Confidence 00000 0000 22334444443 4454432 23467888888888 7
Q ss_pred cCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCC
Q 042359 832 IPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN 874 (979)
Q Consensus 832 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 874 (979)
+|.+ .+.+| .+|+|+|+++..--..|.++++|.+|-+|||
T Consensus 459 vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 459 VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 7776 56777 7888888888666677888888888888886
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=3.6e-24 Score=217.96 Aligned_cols=289 Identities=21% Similarity=0.206 Sum_probs=182.4
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCC-CccccCCccccccCCCCCCEE
Q 042359 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS-NYLLYVDNFWWLSGLSFLEHL 202 (979)
Q Consensus 124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~-n~i~~~~~~~~l~~l~~L~~L 202 (979)
.-..++|..|.|+.+ -|.+|+.+++||.||||+|+|+.+-|+.|.++++|..|.+.+ |+|.+++.
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k------------- 133 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK------------- 133 (498)
T ss_pred cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-------------
Confidence 456788899999987 378899999999999999999988899999998888877766 66666653
Q ss_pred EccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCc-cccCCCC
Q 042359 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPR-GLQNLTS 281 (979)
Q Consensus 203 ~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~-~l~~l~~ 281 (979)
..|+++.+|+.|.+.-|++..+....|..+++|..|.+..|.+.. ++. .+..+..
T Consensus 134 --------------~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~----------i~~~tf~~l~~ 189 (498)
T KOG4237|consen 134 --------------GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS----------ICKGTFQGLAA 189 (498)
T ss_pred --------------hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh----------hccccccchhc
Confidence 234555566666666666666666666666666666666665542 222 3444455
Q ss_pred CCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeec
Q 042359 282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNL 361 (979)
Q Consensus 282 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L 361 (979)
++.+.+..|.+.. ..+++.+... ....|..++.........+
T Consensus 190 i~tlhlA~np~ic-----dCnL~wla~~---------------------------------~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 190 IKTLHLAQNPFIC-----DCNLPWLADD---------------------------------LAMNPIETSGARCVSPYRL 231 (498)
T ss_pred cchHhhhcCcccc-----ccccchhhhH---------------------------------HhhchhhcccceecchHHH
Confidence 5555555444211 1111111100 0011122222222222233
Q ss_pred cCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCC
Q 042359 362 RGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDN 441 (979)
Q Consensus 362 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 441 (979)
...++....+..+....... ...+....+.........|..+++|++|++++|+++++-+.+|.+...+++|.|..|
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl---~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESL---PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHhcccchhhhhhhHHhH---HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 33333222222111110000 011111111122222345888999999999999999988889999999999999999
Q ss_pred cCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccC
Q 042359 442 KLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYV 492 (979)
Q Consensus 442 ~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 492 (979)
++. .+....|.++..|+.|++.+|+|+...+..|.+...|.+|++-.|..
T Consensus 309 ~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 309 KLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 987 67777899999999999999999988888888888888888876654
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.9e-21 Score=242.12 Aligned_cols=337 Identities=20% Similarity=0.240 Sum_probs=162.7
Q ss_pred ChhhhcCCCCCcEEEccCCccc------ccccCCCCC-cccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCC
Q 042359 448 SAIHFANLTKLSWFRVDGNKLT------LGVKHDWIP-PFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIF 520 (979)
Q Consensus 448 ~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~-~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 520 (979)
....|.++++|+.|.+..+... ...+..+.. +.+|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+....
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc
Confidence 3345666666666666544321 111122222 234566666555443 345444 3566777777777765432
Q ss_pred chHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCcc---CCCCcEEEcccccccccCChhhhhcc
Q 042359 521 PIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLI---SSNLVFLDLSNNLFSGSISPFLCYRI 597 (979)
Q Consensus 521 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~l 597 (979)
. .+ ..+++|+.|+++++...+.+|.++.+++|+.|++++|.....+|.. +.+|+.|++++|...+.+|..+
T Consensus 628 ~-~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---- 701 (1153)
T PLN03210 628 D-GV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---- 701 (1153)
T ss_pred c-cc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC----
Confidence 2 22 3466677777776655555666656666666666666554444432 3455555555544433444321
Q ss_pred cCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccc-------cccccccc
Q 042359 598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS-------GNILVSLK 670 (979)
Q Consensus 598 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-------~~~p~~l~ 670 (979)
++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|++|++.++... ...+....
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhh
Confidence 2455555555555444334322 234555555555544 344333 3444555544442211 00111111
Q ss_pred CCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcc
Q 042359 671 NCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVT 750 (979)
Q Consensus 671 ~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~ 750 (979)
.+++|+.|++++|...+.+|.++. .+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--------- 844 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--------- 844 (1153)
T ss_pred ccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---------
Confidence 223444445544444444444443 34444444444443333444333 3444444444444332222211
Q ss_pred cccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCC-cce
Q 042359 751 ACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYN-SFT 829 (979)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N-~l~ 829 (979)
...++.|+|++|.++ .+|..++.+++|+.|+|++| ++.
T Consensus 845 ----------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 845 ----------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred ----------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 122355666666665 45666666666666666653 333
Q ss_pred eccCCCCCccCCCCEEECcCCc
Q 042359 830 GRIPESIGVMRSLESIDFSANQ 851 (979)
Q Consensus 830 ~~ip~~~~~l~~L~~LdLs~N~ 851 (979)
.+|..+..+++|+.|++++|.
T Consensus 884 -~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 -RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -ccCcccccccCCCeeecCCCc
Confidence 455555566666666666553
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=8.6e-21 Score=239.96 Aligned_cols=336 Identities=19% Similarity=0.204 Sum_probs=182.2
Q ss_pred CCCcccccEEeccccc------CCCCCChhhhCC-CCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCc
Q 042359 476 WIPPFQLVALGLRNCY------VGSRFPLWLYSQ-KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNL 548 (979)
Q Consensus 476 ~~~~~~L~~L~l~~~~------~~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l 548 (979)
|..+.+|+.|.+..+. ....+|..+..+ .+|+.|++.++.+... |..+ ...+|+.|++.+|.+.......
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f--~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF--RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC--CccCCcEEECcCcccccccccc
Confidence 4445555555554332 112234433333 2355555555554333 2222 2345555555555554333344
Q ss_pred ccccCCcEEEeecccCCCCCCcc--CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCC
Q 042359 549 TEFTGLLILSVYSNNMSGPLPLI--SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQN 626 (979)
Q Consensus 549 ~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 626 (979)
..+++|+.++++++...+.+|.. +++|+.|++++|.....+|..+ +.+++|+.|++++|...+.+|..+ ++++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si----~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI----QYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh----hccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 44555555555555444444432 3455555555554444444332 234555555555544444444433 4455
Q ss_pred CCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCccc---c---cCChhHHHhhhcc
Q 042359 627 LKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV---G---NIPTWIGERFSRM 700 (979)
Q Consensus 627 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~---~---~ip~~~~~~l~~L 700 (979)
|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|++|++.++... + .++.......++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 555555555443334421 234555555555543 334332 3444555554442210 0 0111111123455
Q ss_pred ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS 780 (979)
Q Consensus 701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (979)
+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ +
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~------------------------------------ 823 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N------------------------------------ 823 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C------------------------------------
Confidence 555555555555555555555555555555554433444332 1
Q ss_pred cCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCC
Q 042359 781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM 860 (979)
Q Consensus 781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l 860 (979)
++.|+.|+|++|.....+|.. .++|+.|+|++|.++ .+|.+++.+++|+.|+|++|+--..+|..+
T Consensus 824 ----------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 824 ----------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred ----------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 345589999998776677754 367999999999999 799999999999999999855444688888
Q ss_pred CCCCCCCEEEccCCc
Q 042359 861 SSLTFLNHLNLSNNN 875 (979)
Q Consensus 861 ~~l~~L~~L~ls~N~ 875 (979)
..+++|+.+++++|.
T Consensus 890 ~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 890 SKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCCCeeecCCCc
Confidence 999999999999885
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.5e-21 Score=227.57 Aligned_cols=240 Identities=26% Similarity=0.329 Sum_probs=153.0
Q ss_pred CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEcc
Q 042359 554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS 633 (979)
Q Consensus 554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 633 (979)
|+.|++.+|+++. +|..+++|++|++++|+++. +|.. .++|+.|++++|.+. .+|.. ..+|+.|+++
T Consensus 224 L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 224 ITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-------PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-------ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 4444444444432 23334566666666666653 2321 245666666666665 33332 2456667777
Q ss_pred CCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCC
Q 042359 634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP 713 (979)
Q Consensus 634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 713 (979)
+|+++ .+|.. +++|+.|++++|++++ +|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|++++
T Consensus 291 ~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 291 GNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS- 356 (788)
T ss_pred CCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-
Confidence 77776 44532 3567777777777764 3332 234666777777776 45531 2467777777777773
Q ss_pred CCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccc
Q 042359 714 LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL 793 (979)
Q Consensus 714 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (979)
+|.. ..+|+.|++++|+++ .+|... ..
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~-~LP~l~-------------------------------------------------~~ 383 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLT-SLPALP-------------------------------------------------SG 383 (788)
T ss_pred CCCC---Ccccceehhhccccc-cCcccc-------------------------------------------------cc
Confidence 4432 245677778888776 345321 12
Q ss_pred eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873 (979)
Q Consensus 794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 873 (979)
|+.|||++|+|+ .+|... ++|+.|++++|+++ .+|... .+|+.|++++|+|+ .+|..+.++++|+.|+|++
T Consensus 384 L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCccc-CCCCcc---cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 477888888888 466543 57888999999988 477643 46778899999988 7888888889999999999
Q ss_pred CcccccCCC
Q 042359 874 NNLTGKIPS 882 (979)
Q Consensus 874 N~l~g~ip~ 882 (979)
|+|+|.+|.
T Consensus 455 N~Ls~~~~~ 463 (788)
T PRK15387 455 NPLSERTLQ 463 (788)
T ss_pred CCCCchHHH
Confidence 999988765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.4e-21 Score=226.03 Aligned_cols=266 Identities=24% Similarity=0.349 Sum_probs=194.1
Q ss_pred ccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccc
Q 042359 506 LQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLF 585 (979)
Q Consensus 506 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l 585 (979)
-..|+++++.++.+ |..+. ++|+.|++++|+++. +|. ..++|+.|++++|+++. +|..+++|+.|++++|.+
T Consensus 203 ~~~LdLs~~~LtsL-P~~l~---~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTL-PDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCCcC-Ccchh---cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence 45566777766643 33332 357777777777765 332 24567777777777774 355567888888888887
Q ss_pred cccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccc
Q 042359 586 SGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNI 665 (979)
Q Consensus 586 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 665 (979)
.. +|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +
T Consensus 275 ~~-Lp~l-------p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 275 TH-LPAL-------PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L 337 (788)
T ss_pred hh-hhhc-------hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence 64 3321 356888889999887 45542 4679999999999884 5542 2468888999999874 5
Q ss_pred cccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhc
Q 042359 666 LVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745 (979)
Q Consensus 666 p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 745 (979)
|.. ..+|++|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|...
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~--- 401 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP--- 401 (788)
T ss_pred ccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---
Confidence 532 257899999999998 57752 4578889999999984 6653 3578999999999873 55422
Q ss_pred ccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCC
Q 042359 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY 825 (979)
Q Consensus 746 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 825 (979)
..|+.||+++|+++ .+|... .+|+.|++++
T Consensus 402 ----------------------------------------------s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~ 431 (788)
T PRK15387 402 ----------------------------------------------SELKELMVSGNRLT-SLPMLP---SGLLSLSVYR 431 (788)
T ss_pred ----------------------------------------------cCCCEEEccCCcCC-CCCcch---hhhhhhhhcc
Confidence 12478999999998 477643 4688899999
Q ss_pred CcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCC
Q 042359 826 NSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSL 863 (979)
Q Consensus 826 N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l 863 (979)
|+|+ .+|..++++++|+.|+|++|+|+|.+|..+..+
T Consensus 432 NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 432 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred Cccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 9999 899999999999999999999999988877443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=8.6e-20 Score=214.84 Aligned_cols=228 Identities=25% Similarity=0.401 Sum_probs=158.0
Q ss_pred CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL 651 (979)
Q Consensus 572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 651 (979)
+.+++.|++++|+++. +|..+ .++|+.|++++|+++ .+|..+. .+|+.|++++|++. .+|..+. ++|
T Consensus 198 p~~L~~L~Ls~N~Lts-LP~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L 264 (754)
T PRK15370 198 PEQITTLILDNNELKS-LPENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SAL 264 (754)
T ss_pred ccCCcEEEecCCCCCc-CChhh------ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCC
Confidence 4566667777776663 33322 246777777777776 4555443 36778888888777 5666553 478
Q ss_pred cEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccC
Q 042359 652 VWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIAD 731 (979)
Q Consensus 652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 731 (979)
+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++
T Consensus 265 ~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~ 334 (754)
T PRK15370 265 QSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGE 334 (754)
T ss_pred CEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccC
Confidence 88888888877 4565543 47888888888887 4665443 467888888888874 555443 5788888888
Q ss_pred CccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccccccccc
Q 042359 732 NNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE 811 (979)
Q Consensus 732 n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~ 811 (979)
|.+++ +|..+. +.|+.|+|++|+|+ .+|..
T Consensus 335 N~Lt~-LP~~l~------------------------------------------------~sL~~L~Ls~N~L~-~LP~~ 364 (754)
T PRK15370 335 NALTS-LPASLP------------------------------------------------PELQVLDVSKNQIT-VLPET 364 (754)
T ss_pred Ccccc-CChhhc------------------------------------------------CcccEEECCCCCCC-cCChh
Confidence 88874 554321 23478888888887 57766
Q ss_pred ccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCC----CCCCCCCEEEccCCcccc
Q 042359 812 VTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM----SSLTFLNHLNLSNNNLTG 878 (979)
Q Consensus 812 l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l----~~l~~L~~L~ls~N~l~g 878 (979)
+. ++|+.|+|++|+++ .+|..+. .+|+.||+++|+|+ .+|..+ ..++.+..++|.+|+++.
T Consensus 365 lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 365 LP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred hc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 53 67889999999988 6777665 46888899999988 555544 345778889999998873
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=1.4e-19 Score=213.17 Aligned_cols=265 Identities=24% Similarity=0.371 Sum_probs=154.1
Q ss_pred CccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEccccc
Q 042359 505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNL 584 (979)
Q Consensus 505 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~ 584 (979)
+...|++++++++.. |..+ .+.++.|++++|+++... ...+.+|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsL-P~~I---p~~L~~L~Ls~N~LtsLP-----------------------~~l~~nL~~L~Ls~N~ 231 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACI---PEQITTLILDNNELKSLP-----------------------ENLQGNIKTLYANSNQ 231 (754)
T ss_pred CceEEEeCCCCcCcC-Cccc---ccCCcEEEecCCCCCcCC-----------------------hhhccCCCEEECCCCc
Confidence 345666666665543 2221 234556666666555322 2223455566666655
Q ss_pred ccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccc
Q 042359 585 FSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGN 664 (979)
Q Consensus 585 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 664 (979)
++. +|..+ ..+|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++
T Consensus 232 Lts-LP~~l------~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~- 297 (754)
T PRK15370 232 LTS-IPATL------PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT- 297 (754)
T ss_pred ccc-CChhh------hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-
Confidence 552 33322 135666666666665 4454443 35667777777666 4555443 467777777777663
Q ss_pred ccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhh
Q 042359 665 ILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744 (979)
Q Consensus 665 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 744 (979)
+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp- 366 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP- 366 (754)
T ss_pred Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence 444332 35677777777776 455543 2567777777777764 565553 57778888887776 3554321
Q ss_pred cccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCC
Q 042359 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFS 824 (979)
Q Consensus 745 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls 824 (979)
+.|+.|+|++|+++ .+|..+. ..|+.|+++
T Consensus 367 -----------------------------------------------~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 367 -----------------------------------------------PTITTLDVSRNALT-NLPENLP--AALQIMQAS 396 (754)
T ss_pred -----------------------------------------------CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc
Confidence 12367788888877 5666554 357778888
Q ss_pred CCcceeccCCCCC----ccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359 825 YNSFTGRIPESIG----VMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK 879 (979)
Q Consensus 825 ~N~l~~~ip~~~~----~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 879 (979)
+|+++ .+|..+. .++.+..|++.+|.++. ..+..|+.+ ++.+.+.|+
T Consensus 397 ~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp 447 (754)
T PRK15370 397 RNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGP 447 (754)
T ss_pred cCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCC
Confidence 88887 5555443 34677888888888773 233334444 445555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=9.8e-19 Score=192.72 Aligned_cols=162 Identities=27% Similarity=0.255 Sum_probs=72.3
Q ss_pred CCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccc------cCCccccCCCCCCEEEccCCcccccCCcccCC
Q 042359 574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG------ELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGS 647 (979)
Q Consensus 574 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 647 (979)
+|++++++++.++......++..+...+.++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 355555555554432222233333344555555555555441 12223444555555555555554333333333
Q ss_pred CCC---ccEEEcCCccccc----cccccccCC-CCCCEEeccCCcccccCChhHHH---hhhccceeeccCCcccCC---
Q 042359 648 LTS---LVWLHLGENRLSG----NILVSLKNC-TALESLDVGENEFVGNIPTWIGE---RFSRMVVLILRSNKFHGP--- 713 (979)
Q Consensus 648 l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~ip~~~~~---~l~~L~~L~L~~n~l~~~--- 713 (979)
+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++..+..+.. .+++|+.|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 332 5555555555542 122233344 55555555555555322111111 233455555555555421
Q ss_pred -CCccccCCCCccEEEccCCccc
Q 042359 714 -LPTGLCDLAFLQILDIADNNLS 735 (979)
Q Consensus 714 -~p~~l~~l~~L~~L~Ls~n~l~ 735 (979)
++..+..+++|+.|++++|.+.
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccC
Confidence 2222333445555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=4.3e-17 Score=179.61 Aligned_cols=161 Identities=24% Similarity=0.179 Sum_probs=78.9
Q ss_pred EEEcCCCCCC-CCCccccCCCCCCceEecCCCccccCCc---cccccCCCCCCEEEccCccCCCC----chhhhhcCCCC
Q 042359 152 YLNLSRTRIG-GMIPHHLGNLSNLQFLDLSSNYLLYVDN---FWWLSGLSFLEHLDLRSVNLSKA----FDWLMVTNKLP 223 (979)
Q Consensus 152 ~L~Ls~n~i~-~~~p~~~~~L~~L~~L~Ls~n~i~~~~~---~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~l~ 223 (979)
.|+|+.+.++ ...+..+..+.+|+.|+++++.+..... ...+...++|++++++++.+... ......+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667777776 3344556667778888888777643221 11244555666666666655421 11223344455
Q ss_pred CccEEEccCCCCCCCChhhhcCCCC---CCEEECCCCCCCCCCCCCcccccCCccccCC-CCCCEEeccCCcCccc----
Q 042359 224 SLVELRLANCQLHHFSLLATANFSS---LTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL-TSLRHLGLDSNHFNSS---- 295 (979)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l-~~L~~L~L~~n~l~~~---- 295 (979)
+|++|++++|.+....+..+..+.+ |++|++++|+++.... ..+...+..+ ++|+.|++++|.+++.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~-----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL-----RLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH-----HHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 6666666666555444433333333 5555555555542000 1112233333 4555555555555421
Q ss_pred CchhhccCCCCCEEeccCCcCc
Q 042359 296 IPNWLYRFIHLEYLSLSNNSLQ 317 (979)
Q Consensus 296 ~p~~l~~l~~L~~L~L~~n~l~ 317 (979)
++..+..+++|++|++++|.++
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCc
Confidence 1222333444555555555444
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=7.9e-18 Score=152.15 Aligned_cols=143 Identities=34% Similarity=0.478 Sum_probs=126.8
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 679 (979)
++.++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|.++..++.|+.|+++-|++. ..|..|+.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 566777888888887 67778888999999999999998 78889999999999999999987 7899999999999999
Q ss_pred ccCCcccc-cCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccC
Q 042359 680 VGENEFVG-NIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGM 748 (979)
Q Consensus 680 L~~N~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l 748 (979)
+.+|++.. .+|..++ .+..|+.|.+++|.|. .+|..++.+++|+.|.+.+|.+. .+|.+++.++.|
T Consensus 109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL 175 (264)
T ss_pred ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence 99999863 5788888 7999999999999998 89999999999999999999987 789999888776
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.5e-18 Score=155.36 Aligned_cols=181 Identities=24% Similarity=0.469 Sum_probs=121.6
Q ss_pred CCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEE
Q 042359 648 LTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQIL 727 (979)
Q Consensus 648 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 727 (979)
+...+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. .+|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 334444444555444 34444555555555555555554 4555555 4666666666666665 677778888888888
Q ss_pred EccCCcccc-ccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccc
Q 042359 728 DIADNNLSG-AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 806 (979)
Q Consensus 728 ~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~ 806 (979)
|+++|++.. .+|..|..++. |+.|+|+.|.|.
T Consensus 108 dltynnl~e~~lpgnff~m~t----------------------------------------------lralyl~dndfe- 140 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTT----------------------------------------------LRALYLGDNDFE- 140 (264)
T ss_pred hccccccccccCCcchhHHHH----------------------------------------------HHHHHhcCCCcc-
Confidence 888887763 23444433333 366788888888
Q ss_pred cccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCC---CCCEEEccCCcccccCC
Q 042359 807 KIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT---FLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 807 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~---~L~~L~ls~N~l~g~ip 881 (979)
.+|.+++++++|+.|.+..|.+- ++|..++.++.|+.|.+.+|+++ .+|..++++. +=+++.+.+|++..+|.
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 78888889999999999888888 78888898999999999999988 6777777653 22345566777765554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=4.1e-15 Score=175.48 Aligned_cols=116 Identities=39% Similarity=0.675 Sum_probs=103.6
Q ss_pred eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873 (979)
Q Consensus 794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 873 (979)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++++++|++|||++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCc--cCCCccccccCCC-CCCCCCCCCCCC
Q 042359 874 NNLTGKIPSST--QLQSFDVSSFAGN-DLCGAPLPKNCT 909 (979)
Q Consensus 874 N~l~g~ip~~~--~~~~~~~~~~~~n-~lcg~~~~~~c~ 909 (979)
|+++|.+|..- .+......++.+| .+||.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999742 1223344568899 899977555674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.42 E-value=7.4e-13 Score=156.40 Aligned_cols=128 Identities=34% Similarity=0.541 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc----cccceeccC--CC--CcEEEEECCCCCCCCchhhHHHhhccc
Q 042359 39 GCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCC----AWAGVFCDN--IT--GHVLHLDLRNPFNYHKESEYEAIRRTA 110 (979)
Q Consensus 39 ~c~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~ 110 (979)
.+.++|.+||+++|+++.++.. .+|. +..|| .|.||.|+. .. .+|+.|+|++ +.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~---------------n~ 429 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN---------------QG 429 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCC---------------CC
Confidence 4667899999999999976532 4896 44453 799999952 22 2599999998 48
Q ss_pred ccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccc
Q 042359 111 LVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLL 185 (979)
Q Consensus 111 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~ 185 (979)
+.|.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|+|++|.+.
T Consensus 430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 8999999999999999999999999986 8999999999999999999999999999999999999999999865
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.2e-13 Score=148.23 Aligned_cols=195 Identities=26% Similarity=0.407 Sum_probs=137.3
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 679 (979)
+..-...|++.|++. .+|..++.+..|+.+.+..|.+. .+|..+.++..|++++|+.|+++ .+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344556777778777 67777777777777888888777 67777777778888888888777 5666677666 77777
Q ss_pred ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ 759 (979)
Q Consensus 680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 759 (979)
+++|+++ .+|..++ ....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+++..|+
T Consensus 150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------- 212 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------- 212 (722)
T ss_pred EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence 7777776 6777776 6777777777777776 56777777777777777777775 4555444222
Q ss_pred ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCC---
Q 042359 760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI--- 836 (979)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~--- 836 (979)
|..||+|+|+++ .||.+|.+|+.|++|-|.+|.+. ..|..+
T Consensus 213 ----------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k 256 (722)
T KOG0532|consen 213 ----------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK 256 (722)
T ss_pred ----------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence 356778888877 77777777788888888777777 555544
Q ss_pred CccCCCCEEECcCCc
Q 042359 837 GVMRSLESIDFSANQ 851 (979)
Q Consensus 837 ~~l~~L~~LdLs~N~ 851 (979)
|...--++|+..-++
T Consensus 257 GkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 257 GKVHIFKYLSTQACQ 271 (722)
T ss_pred cceeeeeeecchhcc
Confidence 333444566666664
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2.6e-13 Score=145.64 Aligned_cols=195 Identities=27% Similarity=0.424 Sum_probs=155.6
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhcccee
Q 042359 624 YQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVL 703 (979)
Q Consensus 624 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L 703 (979)
+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|.+|||+.|+++ .+|..+. .--|+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeE
Confidence 444567889999998 78888888889999999999987 68888999999999999999998 7888776 3458888
Q ss_pred eccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCc
Q 042359 704 ILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGE 783 (979)
Q Consensus 704 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (979)
.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.++++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------------------------- 191 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------------------------- 191 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence 88988887 78888888888888999988886 677777766665
Q ss_pred cchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCC---
Q 042359 784 MVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM--- 860 (979)
Q Consensus 784 ~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l--- 860 (979)
+.|.++.|++. .+|+++..|+ |..||+|.|+++ .||-.|.+|+.|++|-|.+|.|. ..|..+
T Consensus 192 -----------r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k 256 (722)
T KOG0532|consen 192 -----------RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK 256 (722)
T ss_pred -----------HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence 56777788887 6777777554 788888888888 88888888888888888888887 556554
Q ss_pred CCCCCCCEEEccCCc
Q 042359 861 SSLTFLNHLNLSNNN 875 (979)
Q Consensus 861 ~~l~~L~~L~ls~N~ 875 (979)
+...--++|+..-++
T Consensus 257 GkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 257 GKVHIFKYLSTQACQ 271 (722)
T ss_pred cceeeeeeecchhcc
Confidence 334556677776664
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1.2e-11 Score=140.13 Aligned_cols=123 Identities=31% Similarity=0.491 Sum_probs=73.0
Q ss_pred EEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCC-CccEEEcCCccccccccccccCCCCCCEEeccCC
Q 042359 605 ALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLT-SLVWLHLGENRLSGNILVSLKNCTALESLDVGEN 683 (979)
Q Consensus 605 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 683 (979)
.++++.|.+...+. .+..++.++.|++.+|.++ .+|......+ +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 56666666542222 3344466777777777777 5555555553 7777777777776 34455667777777777777
Q ss_pred cccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCc
Q 042359 684 EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNN 733 (979)
Q Consensus 684 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 733 (979)
+++ .+|.... ..+.|+.|++++|++. .+|..+.....|+++.+++|+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 776 4555443 3556666666666665 444444344445555555553
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.9e-11 Score=138.55 Aligned_cols=83 Identities=40% Similarity=0.637 Sum_probs=38.7
Q ss_pred eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCC
Q 042359 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN 874 (979)
Q Consensus 795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 874 (979)
+.+++++|.+. .++..+.++.++..|.+++|++. .+|..++.+.+++.|++++|+++ .++. ++.+.+++.||+++|
T Consensus 212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCc
Confidence 34444444333 33444444445555555555544 23444445555555555555554 2222 444555555555555
Q ss_pred cccccCC
Q 042359 875 NLTGKIP 881 (979)
Q Consensus 875 ~l~g~ip 881 (979)
.++..+|
T Consensus 288 ~~~~~~~ 294 (394)
T COG4886 288 SLSNALP 294 (394)
T ss_pred cccccch
Confidence 5544433
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.5e-12 Score=131.73 Aligned_cols=189 Identities=29% Similarity=0.288 Sum_probs=123.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCC--CccccCCCCCCceEecCCCccccCCccccccCCC
Q 042359 120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGM--IPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS 197 (979)
Q Consensus 120 ~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~--~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~ 197 (979)
++++.||...|.++.+...........|++++.||||.|-+... +-.....|++|+.|+++.|++........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 57788888888888776532224567788999999999877643 2234567888999999988865543322233567
Q ss_pred CCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcccc
Q 042359 198 FLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ 277 (979)
Q Consensus 198 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~ 277 (979)
.|+.|.+++|.++ ..++...+..+|+|+.|+|..|..-.+......-+..|+.|||++|++-++ ..-...+
T Consensus 198 ~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~--------~~~~~~~ 268 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF--------DQGYKVG 268 (505)
T ss_pred hhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc--------ccccccc
Confidence 7888888888887 445566667778888888888764444444555667777888888777642 1113356
Q ss_pred CCCCCCEEeccCCcCcccC-chh-----hccCCCCCEEeccCCcCc
Q 042359 278 NLTSLRHLGLDSNHFNSSI-PNW-----LYRFIHLEYLSLSNNSLQ 317 (979)
Q Consensus 278 ~l~~L~~L~L~~n~l~~~~-p~~-----l~~l~~L~~L~L~~n~l~ 317 (979)
.++.|+.|+++.+.+...- |+. ...+++|++|++..|++.
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 6777777777777665422 221 134456666666666554
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-11 Score=127.01 Aligned_cols=162 Identities=25% Similarity=0.216 Sum_probs=98.9
Q ss_pred CCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChh-hhcCCCC
Q 042359 170 NLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL-ATANFSS 248 (979)
Q Consensus 170 ~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~ 248 (979)
++.+|+...|.++.+...+.......+++++.|||+.|-+............+|+|+.|+++.|++...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 455566666665555444433445666777777777777777666677777888888888888876655432 2235677
Q ss_pred CCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccccc
Q 042359 249 LTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328 (979)
Q Consensus 249 L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l 328 (979)
|++|.++.|.++. ..+-..+..+|+|+.|++..|.....-......+..|+.|+|++|.+...-.....+.+
T Consensus 199 lK~L~l~~CGls~--------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 199 LKQLVLNSCGLSW--------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hheEEeccCCCCH--------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 7777777777763 33334445667777777777742222222233456677777777766532212345566
Q ss_pred CccCEEecCCC
Q 042359 329 TSISWLDLSLN 339 (979)
Q Consensus 329 ~~L~~L~L~~n 339 (979)
+.|+.|+++.+
T Consensus 271 ~~L~~Lnls~t 281 (505)
T KOG3207|consen 271 PGLNQLNLSST 281 (505)
T ss_pred cchhhhhcccc
Confidence 66666666666
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2e-10 Score=110.52 Aligned_cols=86 Identities=28% Similarity=0.332 Sum_probs=19.8
Q ss_pred CCCCCCEEeCCCCCCCCCCcccccc-CCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCC
Q 042359 121 DLKHLSYLDLSFNDFQGIQIPRFFG-SMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL 199 (979)
Q Consensus 121 ~l~~L~~L~Ls~n~i~~~~lp~~~~-~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 199 (979)
+..++++|+|++|.|+.++ .++ .+.+|+.|||++|.|+.. + .+..+++|++|++++|+|.+++.. ....+++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~-l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEG-LDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHH-HHHH-TT-
T ss_pred ccccccccccccccccccc---chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccc-hHHhCCcC
Confidence 3445677777777766532 344 466677777777776632 2 355666666666666666655421 11234555
Q ss_pred CEEEccCccCCCC
Q 042359 200 EHLDLRSVNLSKA 212 (979)
Q Consensus 200 ~~L~l~~n~~~~~ 212 (979)
++|++++|++.+.
T Consensus 91 ~~L~L~~N~I~~l 103 (175)
T PF14580_consen 91 QELYLSNNKISDL 103 (175)
T ss_dssp -EEE-TTS---SC
T ss_pred CEEECcCCcCCCh
Confidence 5555555555443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=4.6e-10 Score=108.08 Aligned_cols=111 Identities=33% Similarity=0.466 Sum_probs=29.6
Q ss_pred ccCCCCCCEEEcCCCCCCCCCccccC-CCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCC
Q 042359 144 FGSMGNLRYLNLSRTRIGGMIPHHLG-NLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKL 222 (979)
Q Consensus 144 ~~~l~~L~~L~Ls~n~i~~~~p~~~~-~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l 222 (979)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.|..++. +. .+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~---l~--------------------------~L 63 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG---LP--------------------------GL 63 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT---------------------------------
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC---cc--------------------------Ch
Confidence 3445567788888887763 2 2344 46777777777777766654 23 34
Q ss_pred CCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCc
Q 042359 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293 (979)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~ 293 (979)
++|++|++++|+++.+.......+++|++|++++|++.++ +.+ ..+..+++|++|++.+|.++
T Consensus 64 ~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l-------~~l-~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 64 PRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL-------NEL-EPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC-------CCC-GGGGG-TT--EEE-TT-GGG
T ss_pred hhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh-------HHh-HHHHcCCCcceeeccCCccc
Confidence 4445555555555544332223456666666666666542 111 33455566666666666554
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=1.1e-10 Score=118.94 Aligned_cols=254 Identities=25% Similarity=0.261 Sum_probs=121.6
Q ss_pred cccccCCCCCCEEeCCCCCCCCC---CccccccCCCCCCEEEcCCCC---CCCCCccc-------cCCCCCCceEecCCC
Q 042359 116 NPSLLDLKHLSYLDLSFNDFQGI---QIPRFFGSMGNLRYLNLSRTR---IGGMIPHH-------LGNLSNLQFLDLSSN 182 (979)
Q Consensus 116 ~~~l~~l~~L~~L~Ls~n~i~~~---~lp~~~~~l~~L~~L~Ls~n~---i~~~~p~~-------~~~L~~L~~L~Ls~n 182 (979)
-+.+-....+++++|++|.|..- .+...+.+.++|+..++|+-- ....+|.. +...++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 34556678888999999987542 133456677788888887642 22234432 334456666666666
Q ss_pred ccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhh-------------hcCCCCC
Q 042359 183 YLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLA-------------TANFSSL 249 (979)
Q Consensus 183 ~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------l~~l~~L 249 (979)
.+..-.. ..+-..+..+..|++|.|.+|.+....... .+.-+.|
T Consensus 103 A~G~~g~-----------------------~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L 159 (382)
T KOG1909|consen 103 AFGPKGI-----------------------RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL 159 (382)
T ss_pred ccCccch-----------------------HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence 5432211 112223344555555555555544332222 2233556
Q ss_pred CEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCccc----CchhhccCCCCCEEeccCCcCccccCcccc
Q 042359 250 TVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSS----IPNWLYRFIHLEYLSLSNNSLQGTIDSEAL 325 (979)
Q Consensus 250 ~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l 325 (979)
+++..+.|++.+... ..+...+...+.|+.+.+..|.+... +...+..+++|++|||..|.++..- .
T Consensus 160 rv~i~~rNrlen~ga-----~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-s--- 230 (382)
T KOG1909|consen 160 RVFICGRNRLENGGA-----TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-S--- 230 (382)
T ss_pred EEEEeeccccccccH-----HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-H---
Confidence 666666665543110 11223344445555555555554221 1122344455555555555443110 0
Q ss_pred cccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhh-hhccccccCCCcEEECcCCcCccc----cc
Q 042359 326 GNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEIL-DIFSGCVSNGLESLDLRSDSIYGH----LT 400 (979)
Q Consensus 326 ~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~----~~ 400 (979)
..+...++.+++|+.|++++|.+.......+ +.+....+ .|+.|.+.+|.++.. +.
T Consensus 231 ------------------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p-~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 231 ------------------VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP-SLEVLELAGNEITRDAALALA 291 (382)
T ss_pred ------------------HHHHHHhcccchheeecccccccccccHHHHHHHHhccCC-CCceeccCcchhHHHHHHHHH
Confidence 0112223333444444444444433322211 11112222 266666666655421 22
Q ss_pred cccCCCCCCcEEeccCCcCc
Q 042359 401 DQLGQFKNIVTLDFANNSIV 420 (979)
Q Consensus 401 ~~l~~l~~L~~L~Ls~n~l~ 420 (979)
......+.|+.|++++|.+.
T Consensus 292 ~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhcchhhHHhcCCccccc
Confidence 23445677888888888773
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.92 E-value=3e-10 Score=115.93 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCCCcEEeccCCcCcccCc----ccccCCCCCCEEEcCCCcCccc---cChhhhcCCCCCcEEEccCCccc
Q 042359 406 FKNIVTLDFANNSIVGLIP----ESLGQLSTLRVLRINDNKLNGT---LSAIHFANLTKLSWFRVDGNKLT 469 (979)
Q Consensus 406 l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~---l~~~~~~~l~~L~~L~L~~n~l~ 469 (979)
-+.|+.+....|++..... ..|...+.|+.+.++.|.|... +-...|..+++|+.||+.+|-++
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 3556666666665543211 2344455666666666655311 11224555555555555555544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=3.5e-10 Score=112.21 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=27.0
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCC
Q 042359 115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIG 161 (979)
Q Consensus 115 ~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~ 161 (979)
+|-.+.-+++|..+.++++.-.. +-+....-|.|+++...+..++
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred cccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccc
Confidence 34455667788888887775332 2222233467777777776654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=4.9e-10 Score=111.19 Aligned_cols=106 Identities=33% Similarity=0.406 Sum_probs=61.4
Q ss_pred CCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCc
Q 042359 146 SMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSL 225 (979)
Q Consensus 146 ~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L 225 (979)
....|+.||||+|.|+ .+..++.-+++++.|++|+|.|..++. ++.+++|++||+++|.++....|-. ++.++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~Gwh~---KLGNI 354 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVGWHL---KLGNI 354 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhhhHh---hhcCE
Confidence 3455667777777766 455566666777777777777666655 5566666666666666665544432 34455
Q ss_pred cEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCC
Q 042359 226 VELRLANCQLHHFSLLATANFSSLTVLDLSDNQFD 260 (979)
Q Consensus 226 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (979)
+.|.|+.|.+.... .+.++.+|..||+++|++.
T Consensus 355 KtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 355 KTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eeeehhhhhHhhhh--hhHhhhhheeccccccchh
Confidence 55555555444332 2344455555555555554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=5.8e-09 Score=82.44 Aligned_cols=60 Identities=42% Similarity=0.591 Sum_probs=39.7
Q ss_pred CCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcc
Q 042359 817 ALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNL 876 (979)
Q Consensus 817 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 876 (979)
+|+.|++++|+++...+..|..+++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466666666666654445666667777777777777666666666777777777776654
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.73 E-value=1.3e-08 Score=73.32 Aligned_cols=40 Identities=48% Similarity=1.029 Sum_probs=31.2
Q ss_pred CHHHHHHHHHhhhcCC-CCCCCCCCCCCC--CCCccccceecc
Q 042359 41 LGSEKEALLSFKRDLK-DPSNRLASWSGN--GDCCAWAGVFCD 80 (979)
Q Consensus 41 ~~~~~~~ll~~k~~~~-~~~~~l~~W~~~--~~~c~w~gv~c~ 80 (979)
+++|++||++||+++. +|.+.+.+|+.+ .+||.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 3689999999999998 577899999965 799999999995
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.4e-09 Score=123.35 Aligned_cols=193 Identities=32% Similarity=0.366 Sum_probs=115.4
Q ss_pred CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCC
Q 042359 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE 200 (979)
Q Consensus 121 ~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~ 200 (979)
.+..++.+++..|.+.. +-..++.+.+|.+|++.+|+|.. +...+..+++|++|++++|.|.++.. +..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc---hhhccchh
Confidence 45666666677777764 23346677788888888888773 33336677888888888888777765 45555677
Q ss_pred EEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCCh-hhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCC
Q 042359 201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL-LATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL 279 (979)
Q Consensus 201 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l 279 (979)
.|++++|.+..... +..++.|+.+++++|++..+.. . ...+.+++.+++.+|.+.. ..++..+
T Consensus 144 ~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-----------i~~~~~~ 207 (414)
T KOG0531|consen 144 ELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-----------IEGLDLL 207 (414)
T ss_pred hheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-----------ccchHHH
Confidence 77777777776432 3336666666777766666655 3 4566666666666666652 2333334
Q ss_pred CCCCEEeccCCcCcccCchhhccCC--CCCEEeccCCcCccccCcccccccCccCEEecCCC
Q 042359 280 TSLRHLGLDSNHFNSSIPNWLYRFI--HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339 (979)
Q Consensus 280 ~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n 339 (979)
..+..+++..|.++..-+ +..+. +|+.+++++|++. .+ +..+..+..+..+++..|
T Consensus 208 ~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~-~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 208 KKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RS-PEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cc-cccccccccccccchhhc
Confidence 444445666665543221 11222 2566666666654 22 144555555666666555
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=1.3e-08 Score=80.47 Aligned_cols=60 Identities=28% Similarity=0.457 Sum_probs=55.9
Q ss_pred ceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcc
Q 042359 793 LVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQL 852 (979)
Q Consensus 793 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l 852 (979)
.|+.|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999976668899999999999999999988889999999999999999986
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=1.3e-08 Score=123.03 Aligned_cols=109 Identities=34% Similarity=0.350 Sum_probs=61.9
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCC
Q 042359 119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSF 198 (979)
Q Consensus 119 l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~ 198 (979)
|..++.|++|||++|.--+ ++|..++.+-+||||+|+++.+. .+|..+++|.+|.+|++..+.-.... ......|++
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhccc
Confidence 5556777777777654322 36777777777777777777776 56777777777777777665532222 112344666
Q ss_pred CCEEEccCccCCCCchhhhhcCCCCCccEEEc
Q 042359 199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRL 230 (979)
Q Consensus 199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L 230 (979)
||+|.+..............+..+.+|+.+..
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 66666655443332233333344444444444
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=1.9e-08 Score=121.56 Aligned_cols=84 Identities=31% Similarity=0.348 Sum_probs=65.1
Q ss_pred CCCCCEEeCCCCC--CCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCC
Q 042359 122 LKHLSYLDLSFND--FQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL 199 (979)
Q Consensus 122 l~~L~~L~Ls~n~--i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 199 (979)
.+.|++|-+.+|. +..+ -+++|..++.|++|||++|.--+.+|..++.|.+||+|+++++.+..+|.. +.++++|
T Consensus 544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~--l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG--LGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH--HHHHHhh
Confidence 3478899888886 5543 356688899999999999877778999999999999999999988776643 5556666
Q ss_pred CEEEccCcc
Q 042359 200 EHLDLRSVN 208 (979)
Q Consensus 200 ~~L~l~~n~ 208 (979)
.+|++..+.
T Consensus 621 ~~Lnl~~~~ 629 (889)
T KOG4658|consen 621 IYLNLEVTG 629 (889)
T ss_pred heecccccc
Confidence 666665544
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=1.5e-08 Score=114.89 Aligned_cols=226 Identities=30% Similarity=0.314 Sum_probs=161.0
Q ss_pred cccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccC
Q 042359 116 NPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSG 195 (979)
Q Consensus 116 ~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~ 195 (979)
-..+..+++|+.|++.+|.|..+ ...+..+++|++|++++|.|+... .+..++.|+.|++++|.|..+.. +..
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~---~~~ 160 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG---LES 160 (414)
T ss_pred hcccccccceeeeeccccchhhc--ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC---Ccc
Confidence 34578899999999999999964 444788999999999999998653 47788889999999999998887 455
Q ss_pred CCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcc
Q 042359 196 LSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG 275 (979)
Q Consensus 196 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~ 275 (979)
++.|+.+++++|.+...... . ...+.+++.+.+.+|.+..+.. +..+..+..+++..|.++.+ ..
T Consensus 161 l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~-----------~~ 225 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKL-----------EG 225 (414)
T ss_pred chhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceec-----------cC
Confidence 99999999999999886432 1 4788999999999998887654 22334444558888888742 22
Q ss_pred ccCCCC--CCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCccc--C-ccc-
Q 042359 276 LQNLTS--LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGR--I-PRS- 349 (979)
Q Consensus 276 l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~--~-~~~- 349 (979)
+..+.. |+.+++++|.+. ..+..+..+..+..|++..|++.. ...+.....+..+....+ .+... . ...
T Consensus 226 l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN---LEGLERLPKLSELWLNDN-KLALSEAISQEYI 300 (414)
T ss_pred cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc---cccccccchHHHhccCcc-hhcchhhhhcccc
Confidence 223333 899999999986 333567788899999999998873 233445556666666666 33211 1 111
Q ss_pred ccCCCCCCeeeccCccCCc
Q 042359 350 MASLCNLKSLNLRGVHLSQ 368 (979)
Q Consensus 350 l~~l~~L~~L~L~~n~l~~ 368 (979)
....+.++...+..+....
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccccCcccc
Confidence 3344455555555554443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.4e-09 Score=108.09 Aligned_cols=182 Identities=24% Similarity=0.211 Sum_probs=107.8
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEE
Q 042359 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203 (979)
Q Consensus 124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~ 203 (979)
.|++|||+...|+...+-..+..|.+|+.|.|.++++.+.+-..+++-.+|+.|+++.+.-.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~------------------ 247 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF------------------ 247 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc------------------
Confidence 47777777777765545555667777777777777777766667777777777777765411
Q ss_pred ccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhh-hc-CCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCC
Q 042359 204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLA-TA-NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281 (979)
Q Consensus 204 l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~ 281 (979)
......-.+.+++.|.+|++++|.+....... +. --++|+.|+++++.-.- .. ..+..-...+++
T Consensus 248 -------t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-~~-----sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 248 -------TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-QK-----SHLSTLVRRCPN 314 (419)
T ss_pred -------chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-hh-----hHHHHHHHhCCc
Confidence 11122233455666666666666554432211 11 12566677777664210 00 111122346777
Q ss_pred CCEEeccCCc-CcccCchhhccCCCCCEEeccCCcCccccCcc---cccccCccCEEecCCC
Q 042359 282 LRHLGLDSNH-FNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE---ALGNLTSISWLDLSLN 339 (979)
Q Consensus 282 L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~---~l~~l~~L~~L~L~~n 339 (979)
|.+|||+.|. ++......|.+++.|++|.++.|... +|. .+...+.|.+|++.++
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCC---ChHHeeeeccCcceEEEEeccc
Confidence 8888887764 33333445667788888888887643 233 3556778888888776
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=2.7e-08 Score=99.18 Aligned_cols=211 Identities=20% Similarity=0.227 Sum_probs=121.9
Q ss_pred EEEccCCCCCCCChh-hh-cCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCC
Q 042359 227 ELRLANCQLHHFSLL-AT-ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI 304 (979)
Q Consensus 227 ~L~L~~n~l~~~~~~-~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 304 (979)
.|.+.++.|...... .+ ..+..++.+||.+|.+++| .++-.-+.++|.|+.|+++.|.+...+...-....
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW-------seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW-------SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH-------HHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 444444444444331 12 2345666667777776655 44555556677777777777776544433223556
Q ss_pred CCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCC
Q 042359 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNG 384 (979)
Q Consensus 305 ~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 384 (979)
+|++|-|.+..+.-.-....+..++.++.|+++.| +++.+++..+......++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N---------------~~rq~n~Dd~c~e~~s~~------------ 174 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN---------------SLRQLNLDDNCIEDWSTE------------ 174 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc---------------hhhhhccccccccccchh------------
Confidence 77777777766653322445667777888888877 344444444444332222
Q ss_pred CcEEECcCCcCcc--ccccccCCCCCCcEEeccCCcCcccCc-ccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEE
Q 042359 385 LESLDLRSDSIYG--HLTDQLGQFKNIVTLDFANNSIVGLIP-ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF 461 (979)
Q Consensus 385 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 461 (979)
+.++.+-.|...- .+-..-.-++++..+-+..|.+...-. +.+..++.+.-|+|+.|+|...-..+.+.++++|..|
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl 254 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL 254 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence 3333333332110 000111235677777777776654322 3455667777888888888765556678888888888
Q ss_pred EccCCccccc
Q 042359 462 RVDGNKLTLG 471 (979)
Q Consensus 462 ~L~~n~l~~~ 471 (979)
.++++++...
T Consensus 255 Rv~~~Pl~d~ 264 (418)
T KOG2982|consen 255 RVSENPLSDP 264 (418)
T ss_pred eccCCccccc
Confidence 8888887653
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5e-09 Score=104.35 Aligned_cols=224 Identities=24% Similarity=0.261 Sum_probs=125.6
Q ss_pred CEEeCCCCCCCCCCccccccCC--CCCCEEEcCCCCCCCC-CccccCCC-CCCceEecCCCccccCCccccccCCCCCCE
Q 042359 126 SYLDLSFNDFQGIQIPRFFGSM--GNLRYLNLSRTRIGGM-IPHHLGNL-SNLQFLDLSSNYLLYVDNFWWLSGLSFLEH 201 (979)
Q Consensus 126 ~~L~Ls~n~i~~~~lp~~~~~l--~~L~~L~Ls~n~i~~~-~p~~~~~L-~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~ 201 (979)
+.||+.+-.|. |+.++.+ ....++.+....+... +.+.+.-. ..||+||||...|+.-.....++.+.+|+.
T Consensus 139 ~~lDl~~r~i~----p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTGRNIH----PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCCCccC----hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 56677666554 3334433 2344444444333221 11222222 358888888777655444445777888888
Q ss_pred EEccCccCCCCchhhhhcCCCCCccEEEccCC-CCCCCCh-hhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC-
Q 042359 202 LDLRSVNLSKAFDWLMVTNKLPSLVELRLANC-QLHHFSL-LATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN- 278 (979)
Q Consensus 202 L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~- 278 (979)
|.+.++++.+ .+...+++-.+|+.|+++.+ .++.... -.+..++.|..|+++||.+... .+...+..
T Consensus 215 lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~--------~Vtv~V~hi 284 (419)
T KOG2120|consen 215 LSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE--------KVTVAVAHI 284 (419)
T ss_pred ccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch--------hhhHHHhhh
Confidence 8888888776 45666777888888888877 3444333 3457788888888888877631 11111111
Q ss_pred CCCCCEEeccCCcC---cccCchhhccCCCCCEEeccCCc-CccccCcccccccCccCEEecCCCCCCcccCcccccCCC
Q 042359 279 LTSLRHLGLDSNHF---NSSIPNWLYRFIHLEYLSLSNNS-LQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLC 354 (979)
Q Consensus 279 l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~ 354 (979)
-++|+.|+++++.- ...+..-..++++|.+|||++|. ++... ...|..++.|++|.++.|..+.-..--.+...|
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKP 363 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhcCCChHHeeeeccCc
Confidence 24677777777642 11222223466777777777653 22222 334556667777777776433222222344555
Q ss_pred CCCeeeccCc
Q 042359 355 NLKSLNLRGV 364 (979)
Q Consensus 355 ~L~~L~L~~n 364 (979)
.|.+|++.++
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 6666665554
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=6.6e-08 Score=96.46 Aligned_cols=92 Identities=21% Similarity=0.195 Sum_probs=57.0
Q ss_pred CCCCCCceEecCCCccccCCcccc-ccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCC
Q 042359 169 GNLSNLQFLDLSSNYLLYVDNFWW-LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFS 247 (979)
Q Consensus 169 ~~L~~L~~L~Ls~n~i~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 247 (979)
..+..++.|.+.++.|........ -+..+.++.+||.+|.+++..++...+.++|.|+.|+++.|++...+...-....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 333445556666665555544332 3456777888888888888777777777777777777777776654432223445
Q ss_pred CCCEEECCCCCCC
Q 042359 248 SLTVLDLSDNQFD 260 (979)
Q Consensus 248 ~L~~L~Ls~n~l~ 260 (979)
+|++|-|.+..+.
T Consensus 122 nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 122 NLRVLVLNGTGLS 134 (418)
T ss_pred ceEEEEEcCCCCC
Confidence 5666666555544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=2.1e-08 Score=111.31 Aligned_cols=180 Identities=27% Similarity=0.309 Sum_probs=97.9
Q ss_pred CcccCCCCCccEEEcCCccccccccccccCC-CCCCEEeccCCccc----------ccCChhHHHhhhccceeeccCCcc
Q 042359 642 PYSMGSLTSLVWLHLGENRLSGNILVSLKNC-TALESLDVGENEFV----------GNIPTWIGERFSRMVVLILRSNKF 710 (979)
Q Consensus 642 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~N~l~----------~~ip~~~~~~l~~L~~L~L~~n~l 710 (979)
|-.+..+.+|++|.+.++.+... ..+..+ ..|+.|- ..|.+. |.+.... ....|...+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhH
Confidence 54566677888888888887631 111111 1233322 122211 1111111 123456666667766
Q ss_pred cCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhh
Q 042359 711 HGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI 790 (979)
Q Consensus 711 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (979)
. ....++.-++.|+.|||++|++...- .+ ..
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~L----------------------------------------------r~ 207 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKVD--NL----------------------------------------------RR 207 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhhH--HH----------------------------------------------Hh
Confidence 5 34455566677777777777765211 11 12
Q ss_pred ccceeEEecccCcccccccc-cccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCC-CCCCCCCCCCE
Q 042359 791 LNLVRMIDISRNNFSGKIPL-EVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIP-ESMSSLTFLNH 868 (979)
Q Consensus 791 ~~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~ 868 (979)
++.|+.|||++|.+. .+|. ....++ |+.|+|++|.++. + ..+.+|++|+.||+|+|-|++--. .-+..|.+|..
T Consensus 208 l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred cccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 334467777777776 4443 223333 7777777777763 2 246677777777777777765311 12345566777
Q ss_pred EEccCCccccc
Q 042359 869 LNLSNNNLTGK 879 (979)
Q Consensus 869 L~ls~N~l~g~ 879 (979)
|.|.+|++.+.
T Consensus 284 L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 284 LWLEGNPLCCA 294 (1096)
T ss_pred HhhcCCccccC
Confidence 77777777653
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=3.9e-08 Score=86.77 Aligned_cols=84 Identities=24% Similarity=0.395 Sum_probs=41.2
Q ss_pred eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCC
Q 042359 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN 874 (979)
Q Consensus 795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 874 (979)
+.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|.-+..|.++..||..+|.+. +||-.+-.-+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 44555555555 45555555555555555555555 44555555555555555555554 33322221122223334444
Q ss_pred cccccCC
Q 042359 875 NLTGKIP 881 (979)
Q Consensus 875 ~l~g~ip 881 (979)
++.|.-|
T Consensus 157 pl~~~~~ 163 (177)
T KOG4579|consen 157 PLGDETK 163 (177)
T ss_pred cccccCc
Confidence 4444443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=1.8e-08 Score=111.90 Aligned_cols=104 Identities=28% Similarity=0.306 Sum_probs=52.8
Q ss_pred CCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCc-cccCCCCCCEEeccCCcCcccCchh
Q 042359 221 KLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPR-GLQNLTSLRHLGLDSNHFNSSIPNW 299 (979)
Q Consensus 221 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~ 299 (979)
-++.++.|+|++|+++... .+..+++|++|||++|++.. +|. ....+. |+.|.+.+|.++.. ..
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~----------vp~l~~~gc~-L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH----------VPQLSMVGCK-LQLLNLRNNALTTL--RG 249 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc----------ccccchhhhh-heeeeecccHHHhh--hh
Confidence 3444444455554444433 44555555555555555543 221 111222 66666666655432 23
Q ss_pred hccCCCCCEEeccCCcCccccCcccccccCccCEEecCCC
Q 042359 300 LYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339 (979)
Q Consensus 300 l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n 339 (979)
+.++++|+.||+++|-+.+.-....+..+..|+.|.|.+|
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 4556666666666665554333344555556666666666
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.02 E-value=3.5e-07 Score=95.98 Aligned_cols=282 Identities=19% Similarity=0.127 Sum_probs=131.0
Q ss_pred CCCCEEEcCCCCCCCCCc--cccCCCCCCceEecCCCccccCCc-cccccCCCCCCEEEccCccCCCCchhhhhcCCCCC
Q 042359 148 GNLRYLNLSRTRIGGMIP--HHLGNLSNLQFLDLSSNYLLYVDN-FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPS 224 (979)
Q Consensus 148 ~~L~~L~Ls~n~i~~~~p--~~~~~L~~L~~L~Ls~n~i~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 224 (979)
..|+.|.+++++-.+.-+ ..-.+++++++|++.++...+... ...-..+++|++|++..+.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~---------------- 201 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS---------------- 201 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc----------------
Confidence 357778888776443221 223466777777777765222111 1112334455555444422
Q ss_pred ccEEEccCCCCCCCChh-hhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhh---
Q 042359 225 LVELRLANCQLHHFSLL-ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWL--- 300 (979)
Q Consensus 225 L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--- 300 (979)
.++..... ....+++|++|+++|+.--+- ..+.....+++.++.+.+.+|.=. .-+.+
T Consensus 202 ---------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~-------~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~ 263 (483)
T KOG4341|consen 202 ---------SITDVSLKYLAEGCRKLKYLNLSWCPQISG-------NGVQALQRGCKELEKLSLKGCLEL--ELEALLKA 263 (483)
T ss_pred ---------hhHHHHHHHHHHhhhhHHHhhhccCchhhc-------CcchHHhccchhhhhhhhcccccc--cHHHHHHH
Confidence 22222222 223445555555555532110 112222334444555555544211 11111
Q ss_pred -ccCCCCCEEeccCCcCccccCc-ccccccCccCEEecCCCCCCcccCcccc-cCCCCCCeeeccCccCCcccchhhhhc
Q 042359 301 -YRFIHLEYLSLSNNSLQGTIDS-EALGNLTSISWLDLSLNMGIEGRIPRSM-ASLCNLKSLNLRGVHLSQEISEILDIF 377 (979)
Q Consensus 301 -~~l~~L~~L~L~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~ 377 (979)
+.+..+.++++..+......+. ..-..+..|+.|+.+++..+.+..-..+ .+..+|+.+.+++++.-+..-- ..
T Consensus 264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f---t~ 340 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF---TM 340 (483)
T ss_pred hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh---hh
Confidence 1233445555545432211111 1112456677777776644443333333 2556777777776653211100 02
Q ss_pred cccccCCCcEEECcCCcCc--cccccccCCCCCCcEEeccCCcCcccC-----cccccCCCCCCEEEcCCCcCccccChh
Q 042359 378 SGCVSNGLESLDLRSDSIY--GHLTDQLGQFKNIVTLDFANNSIVGLI-----PESLGQLSTLRVLRINDNKLNGTLSAI 450 (979)
Q Consensus 378 ~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~l~~~ 450 (979)
++.....|+.+++.++... +.+...-.+++.|+.+.+++|...... ...-..+..|+.+.|++++...+-...
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 2222223777777666432 122333346777888888877543221 111234566777777777765444444
Q ss_pred hhcCCCCCcEEEccCC
Q 042359 451 HFANLTKLSWFRVDGN 466 (979)
Q Consensus 451 ~~~~l~~L~~L~L~~n 466 (979)
.+..+++|+.+++-++
T Consensus 421 ~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 421 HLSICRNLERIELIDC 436 (483)
T ss_pred HHhhCcccceeeeech
Confidence 5556666666555443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=6.9e-07 Score=79.06 Aligned_cols=111 Identities=28% Similarity=0.409 Sum_probs=85.2
Q ss_pred EEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCC
Q 042359 201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLT 280 (979)
Q Consensus 201 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~ 280 (979)
.++|+.+++-.+.+....+.....|+..+|++|.+..+++..-...+.++.|++++|.+++ +|..+..++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd----------vPeE~Aam~ 100 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD----------VPEELAAMP 100 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh----------chHHHhhhH
Confidence 3444555544444555666677778888888888888888777778889999999999864 788888899
Q ss_pred CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcc
Q 042359 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE 323 (979)
Q Consensus 281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~ 323 (979)
.|+.|+++.|.+. ..|..+..+.++..|+..+|.+. .++..
T Consensus 101 aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 101 ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 9999999999886 56777778888889998888776 55333
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=2.2e-06 Score=84.74 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=7.5
Q ss_pred CCCCceEecCCCcc
Q 042359 171 LSNLQFLDLSSNYL 184 (979)
Q Consensus 171 L~~L~~L~Ls~n~i 184 (979)
+..+..+|||+|.|
T Consensus 29 ~d~~~evdLSGNti 42 (388)
T COG5238 29 MDELVEVDLSGNTI 42 (388)
T ss_pred hcceeEEeccCCcc
Confidence 44555555555554
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=2.3e-05 Score=85.04 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=53.3
Q ss_pred cCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCc
Q 042359 645 MGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFL 724 (979)
Q Consensus 645 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 724 (979)
+..+.+++.|++++|.++ .+|. -..+|+.|.+++|.-...+|..+ .++|+.|++++|.....+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence 445688999999999887 4552 23469999998865545677654 35889999998833334554 46
Q ss_pred cEEEccCCcc
Q 042359 725 QILDIADNNL 734 (979)
Q Consensus 725 ~~L~Ls~n~l 734 (979)
+.|+++++..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7777776554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=1.9e-05 Score=75.22 Aligned_cols=108 Identities=27% Similarity=0.292 Sum_probs=79.0
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEE
Q 042359 123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202 (979)
Q Consensus 123 ~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L 202 (979)
.....+||++|.+... +.|..+++|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|.|..+.+..-+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4567889999988753 3577888999999999999877676556678899999999998888777777888888888
Q ss_pred EccCccCCCCchh-hhhcCCCCCccEEEccCC
Q 042359 203 DLRSVNLSKAFDW-LMVTNKLPSLVELRLANC 233 (979)
Q Consensus 203 ~l~~n~~~~~~~~-~~~~~~l~~L~~L~L~~n 233 (979)
.+-+|+++..... ...+..+|+|+.||++.-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888877765332 123345555555555543
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=1.3e-05 Score=79.34 Aligned_cols=143 Identities=13% Similarity=0.113 Sum_probs=73.7
Q ss_pred CCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCC--Cc-------cccccCCCCCCEE
Q 042359 83 TGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGI--QI-------PRFFGSMGNLRYL 153 (979)
Q Consensus 83 ~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~l-------p~~~~~l~~L~~L 153 (979)
...++.+||+|+....... ..+...+.+-++|+..++++-..... ++ ..++-+|++|+..
T Consensus 29 ~d~~~evdLSGNtigtEA~-----------e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAM-----------EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred hcceeEEeccCCcccHHHH-----------HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceee
Confidence 3567888998853222111 11223344556777777765322111 11 2334567788888
Q ss_pred EcCCCCCCCCCccc----cCCCCCCceEecCCCccccCCccc------------cccCCCCCCEEEccCccCCCCch--h
Q 042359 154 NLSRTRIGGMIPHH----LGNLSNLQFLDLSSNYLLYVDNFW------------WLSGLSFLEHLDLRSVNLSKAFD--W 215 (979)
Q Consensus 154 ~Ls~n~i~~~~p~~----~~~L~~L~~L~Ls~n~i~~~~~~~------------~l~~l~~L~~L~l~~n~~~~~~~--~ 215 (979)
+||.|.+....|.. +++-+.|.+|.+++|.+..+.+.. ....-|.|++..+..|++...+. |
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH
Confidence 88888776555543 345567777777777654443321 12234555566666555554321 2
Q ss_pred hhhcCCCCCccEEEccCCCCC
Q 042359 216 LMVTNKLPSLVELRLANCQLH 236 (979)
Q Consensus 216 ~~~~~~l~~L~~L~L~~n~l~ 236 (979)
...+..-..|+++.+..|.|.
T Consensus 178 a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred HHHHHhhcCceeEEeeecCcC
Confidence 222223344555555555444
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=8.7e-07 Score=93.06 Aligned_cols=288 Identities=18% Similarity=0.107 Sum_probs=131.5
Q ss_pred CCCEEeCCCCCCCC-CCccccccCCCCCCEEEcCCCC-CCCCCcccc-CCCCCCceEecCCCc-cccCCccccccCCCCC
Q 042359 124 HLSYLDLSFNDFQG-IQIPRFFGSMGNLRYLNLSRTR-IGGMIPHHL-GNLSNLQFLDLSSNY-LLYVDNFWWLSGLSFL 199 (979)
Q Consensus 124 ~L~~L~Ls~n~i~~-~~lp~~~~~l~~L~~L~Ls~n~-i~~~~p~~~-~~L~~L~~L~Ls~n~-i~~~~~~~~l~~l~~L 199 (979)
.|+.|.++++.=.+ .++-....+++++++|++.++. ++...-..+ ..+++|++|++..|. +++........++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45555555553211 1122344556666666666553 221111111 345566666666543 2222111123455666
Q ss_pred CEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCCh--hhhcCCCCCCEEECCCCC-CCCCCCCCcccccCCccc
Q 042359 200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL--LATANFSSLTVLDLSDNQ-FDKWFIPSWVFGPIPRGL 276 (979)
Q Consensus 200 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~p~~l 276 (979)
++|+++.+.......+.....++..++.+.+.+|.-.+... ..-+.+..+.++++..+. +++ ..+-..-
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD--------~~~~~i~ 290 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD--------EDLWLIA 290 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc--------hHHHHHh
Confidence 66666655433222222233445555555555542222111 111223334444444442 221 1111111
Q ss_pred cCCCCCCEEeccCCcCcccC-chhh-ccCCCCCEEeccCCcCccccCcccc-cccCccCEEecCCCCCCccc-CcccccC
Q 042359 277 QNLTSLRHLGLDSNHFNSSI-PNWL-YRFIHLEYLSLSNNSLQGTIDSEAL-GNLTSISWLDLSLNMGIEGR-IPRSMAS 352 (979)
Q Consensus 277 ~~l~~L~~L~L~~n~l~~~~-p~~l-~~l~~L~~L~L~~n~l~~~i~~~~l-~~l~~L~~L~L~~n~~l~~~-~~~~l~~ 352 (979)
..+..|+.|+.+++...+.. -..+ .+..+|++|.++.++.-+......+ .+++.|+.+++..+....+. +...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 34556677777666432211 1112 2456777777777653222212222 25667777777776333322 2222235
Q ss_pred CCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCc-ccCcccccCCC
Q 042359 353 LCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIV-GLIPESLGQLS 431 (979)
Q Consensus 353 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~ 431 (979)
++.|+.+.+++|....... ++.+ ...-..+..|+.+.++++... ...-+.+..++
T Consensus 371 C~~lr~lslshce~itD~g-------------i~~l-----------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEG-------------IRHL-----------SSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred CchhccCChhhhhhhhhhh-------------hhhh-----------hhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 6677777777665432210 0000 011223456667777777543 22233456677
Q ss_pred CCCEEEcCCCcC
Q 042359 432 TLRVLRINDNKL 443 (979)
Q Consensus 432 ~L~~L~L~~n~l 443 (979)
+|+.+++.+++-
T Consensus 427 ~Leri~l~~~q~ 438 (483)
T KOG4341|consen 427 NLERIELIDCQD 438 (483)
T ss_pred ccceeeeechhh
Confidence 888888877764
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2e-05 Score=56.71 Aligned_cols=37 Identities=43% Similarity=0.556 Sum_probs=18.0
Q ss_pred CCCEEEcCCCCCCCCCccccCCCCCCceEecCCCcccc
Q 042359 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY 186 (979)
Q Consensus 149 ~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~ 186 (979)
+|++|++++|+|+ .+|..+++|++|++|++++|++.+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555 334445555555555555555443
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=1.3e-05 Score=57.65 Aligned_cols=8 Identities=38% Similarity=0.762 Sum_probs=2.5
Q ss_pred EecccCcc
Q 042359 797 IDISRNNF 804 (979)
Q Consensus 797 LdLs~N~l 804 (979)
|++++|+|
T Consensus 6 L~l~~N~i 13 (44)
T PF12799_consen 6 LDLSNNQI 13 (44)
T ss_dssp EEETSSS-
T ss_pred EEccCCCC
Confidence 33333333
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=9.8e-05 Score=70.48 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=28.3
Q ss_pred CccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCc
Q 042359 224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293 (979)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~ 293 (979)
.|..|.+++|+|+.+.+.--..+++|+.|.|.+|.+.++ +++ ..+..+++|++|.+-+|.++
T Consensus 65 rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-------~dl-~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 65 RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-------GDL-DPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred ccceEEecCCcceeeccchhhhccccceEEecCcchhhh-------hhc-chhccCCccceeeecCCchh
Confidence 333333333344433333333445555666666655432 222 22344555555555555543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.52 E-value=0.00026 Score=77.04 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=16.0
Q ss_pred CCCCEEeccCCcccccCChhHHHhhhccceeeccCC
Q 042359 673 TALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 708 (979)
Q Consensus 673 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n 708 (979)
++|++|++++|... .+|..+ ..+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~L---P~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKL---PESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCcccc---cccCcEEEeccc
Confidence 45666666665543 233322 135555555544
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.47 E-value=6.8e-05 Score=74.90 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=66.3
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCC--CCCCCCccccCCCCCCceEecCCCccccCCcccc
Q 042359 115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRT--RIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW 192 (979)
Q Consensus 115 ~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n--~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~ 192 (979)
+..-.-.+..|+.|++.+..++.. ..+-.+++|++|.+|.| ++.+.++-....+++|++|+++.|+|..+....-
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 444444556667777766666543 23556889999999999 6666666666677899999999998877666555
Q ss_pred ccCCCCCCEEEccCccCCCC
Q 042359 193 LSGLSFLEHLDLRSVNLSKA 212 (979)
Q Consensus 193 l~~l~~L~~L~l~~n~~~~~ 212 (979)
+..+.+|..|++..|..+..
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNL 131 (260)
T ss_pred hhhhcchhhhhcccCCcccc
Confidence 66666677777766665554
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=4.7e-05 Score=90.13 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=14.4
Q ss_pred CCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCC
Q 042359 220 NKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSD 256 (979)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (979)
.++|+|..||+++.+++.+ ..++.+++|++|.+.+
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN 204 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence 3344444444444444333 2334444444444433
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=5.9e-05 Score=89.31 Aligned_cols=134 Identities=21% Similarity=0.257 Sum_probs=84.5
Q ss_pred CCCCEEeCCCCCCCCCCcccccc-CCCCCCEEEcCCCCCCCC-CccccCCCCCCceEecCCCccccCCccccccCCCCCC
Q 042359 123 KHLSYLDLSFNDFQGIQIPRFFG-SMGNLRYLNLSRTRIGGM-IPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE 200 (979)
Q Consensus 123 ~~L~~L~Ls~n~i~~~~lp~~~~-~l~~L~~L~Ls~n~i~~~-~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~ 200 (979)
.+|++||+++...-...=|..++ .||.|+.|.+++-.+... .-....++++|..||+|++.+..+.+ +++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G---IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG---ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH---HhccccHH
Confidence 46777777775432211233333 467777777777655422 22334567777777777777766633 66777777
Q ss_pred EEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCCh------hhhcCCCCCCEEECCCCCCC
Q 042359 201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL------LATANFSSLTVLDLSDNQFD 260 (979)
Q Consensus 201 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~l~~l~~L~~L~Ls~n~l~ 260 (979)
+|.+.+-.+....++ ..+.++++|+.||+|......... +.-..+|+|+.||.|+..+.
T Consensus 199 ~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777777777664443 344568888888888765444331 22345789999999988776
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=3.8e-05 Score=76.52 Aligned_cols=87 Identities=25% Similarity=0.270 Sum_probs=74.1
Q ss_pred CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCC
Q 042359 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE 200 (979)
Q Consensus 121 ~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~ 200 (979)
.+.+.+.|+.-++.++.+. ...+++.|++|.||-|.|+..-| +..+++|++|.|..|.|.+++...++.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3567788999999998764 35689999999999999986544 789999999999999999999999999999999
Q ss_pred EEEccCccCCCC
Q 042359 201 HLDLRSVNLSKA 212 (979)
Q Consensus 201 ~L~l~~n~~~~~ 212 (979)
.|.|..|...+.
T Consensus 92 ~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 92 TLWLDENPCCGE 103 (388)
T ss_pred hHhhccCCcccc
Confidence 999988877653
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0015 Score=65.60 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=48.0
Q ss_pred cccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCcccc-ccCCCCCCEEEccCccCCCCchhhhhc
Q 042359 141 PRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW-LSGLSFLEHLDLRSVNLSKAFDWLMVT 219 (979)
Q Consensus 141 p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~ 219 (979)
....-.+..|+.|++.+..++.. ..+-.|++|+.|++|.|+......... ..++++|++|++++|++..+. -...+
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls-tl~pl 112 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS-TLRPL 112 (260)
T ss_pred ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc-ccchh
Confidence 33344556677777777666532 345567778888888774322222211 233466666666666555421 12233
Q ss_pred CCCCCccEEEccCCCCC
Q 042359 220 NKLPSLVELRLANCQLH 236 (979)
Q Consensus 220 ~~l~~L~~L~L~~n~l~ 236 (979)
..+.+|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 34444444444444333
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.21 E-value=0.0098 Score=55.14 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEE
Q 042359 599 ETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESL 678 (979)
Q Consensus 599 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 678 (979)
.+++|+.+.+.. .+...-..+|.++++|+.+.+.++ +...-...|..+++|+.+.+.+ .+.......|.++++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 344555555543 233333344555555666655553 3323333455555555555544 3322223344455555555
Q ss_pred eccC
Q 042359 679 DVGE 682 (979)
Q Consensus 679 ~L~~ 682 (979)
++..
T Consensus 87 ~~~~ 90 (129)
T PF13306_consen 87 DIPS 90 (129)
T ss_dssp EETT
T ss_pred ccCc
Confidence 5544
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.17 E-value=0.014 Score=54.13 Aligned_cols=55 Identities=22% Similarity=0.386 Sum_probs=22.0
Q ss_pred cccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCc
Q 042359 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459 (979)
Q Consensus 401 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 459 (979)
..|..+++|+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 35556677777777554 443444456665 677777665 222 44555666666553
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.99 E-value=0.0015 Score=76.44 Aligned_cols=115 Identities=23% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCCCCCEEeCCCCC-CCCCCccccccCCCCCCEEEcCCC-CCCCCC----ccccCCCCCCceEecCCCc-cccCCccccc
Q 042359 121 DLKHLSYLDLSFND-FQGIQIPRFFGSMGNLRYLNLSRT-RIGGMI----PHHLGNLSNLQFLDLSSNY-LLYVDNFWWL 193 (979)
Q Consensus 121 ~l~~L~~L~Ls~n~-i~~~~lp~~~~~l~~L~~L~Ls~n-~i~~~~----p~~~~~L~~L~~L~Ls~n~-i~~~~~~~~l 193 (979)
.++.|+.|.+.++. +....+-.....+++|+.|+++++ ...... ......+++|+.|+++.+. +.+.......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35677777776663 332112234556777777777763 111111 1233445667777777666 3333222222
Q ss_pred cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCC
Q 042359 194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235 (979)
Q Consensus 194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l 235 (979)
..+++|++|.+.++.-.....+......++.|++|+++.|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 335666666655554222223334445556666666665543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.85 E-value=0.0041 Score=37.13 Aligned_cols=19 Identities=53% Similarity=0.805 Sum_probs=8.6
Q ss_pred CCEEECcCCcccccCCCCCC
Q 042359 842 LESIDFSANQLSGEIPESMS 861 (979)
Q Consensus 842 L~~LdLs~N~l~~~ip~~l~ 861 (979)
|++|||++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444444444444 4444333
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.00053 Score=68.60 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=37.8
Q ss_pred CCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCC
Q 042359 147 MGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKA 212 (979)
Q Consensus 147 l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 212 (979)
+.+.+.|++-+|.+.++ ....+|+.|++|.||-|+|.++.. +..+++|++|.|..|.|.++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccH
Confidence 45667777777777643 234567777777777777666554 44555555555555555544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.005 Score=36.75 Aligned_cols=19 Identities=42% Similarity=0.607 Sum_probs=9.6
Q ss_pred CCEEeCCCCcceeccCCCCC
Q 042359 818 LQSLNFSYNSFTGRIPESIG 837 (979)
Q Consensus 818 L~~L~Ls~N~l~~~ip~~~~ 837 (979)
|+.|||++|+|+ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4554444
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.39 E-value=0.0034 Score=73.43 Aligned_cols=223 Identities=24% Similarity=0.114 Sum_probs=123.3
Q ss_pred ccccCCCCCCEEeCCCC-C-CCCCC--ccccccCCCCCCEEEcCCCC-CCCCCccccC-CCCCCceEecCCCc-cccCCc
Q 042359 117 PSLLDLKHLSYLDLSFN-D-FQGIQ--IPRFFGSMGNLRYLNLSRTR-IGGMIPHHLG-NLSNLQFLDLSSNY-LLYVDN 189 (979)
Q Consensus 117 ~~l~~l~~L~~L~Ls~n-~-i~~~~--lp~~~~~l~~L~~L~Ls~n~-i~~~~p~~~~-~L~~L~~L~Ls~n~-i~~~~~ 189 (979)
+.....++|+.|+++++ . +.... .......+++|+.|+++.+. ++...-..++ .+++|++|.+.++. +++...
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 34567899999999973 2 22110 12345567999999999998 6544333333 38899999988887 555555
Q ss_pred cccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCccc
Q 042359 190 FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVF 269 (979)
Q Consensus 190 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 269 (979)
.....+++.|++|+++++.......+......+++++.|.+....- ++.++.+.+....-... .
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~------d 351 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTS------D 351 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccCc------h
Confidence 5567789999999999888764444444455677777766544321 23333333322211100 0
Q ss_pred ccCCccccCCCCCCEEeccCCcCcccC-chhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcc
Q 042359 270 GPIPRGLQNLTSLRHLGLDSNHFNSSI-PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPR 348 (979)
Q Consensus 270 ~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~ 348 (979)
......+..+++++++.+..+...... ...+.+++.|. ..+... .....+++.|+++.+...+...-.
T Consensus 352 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~~~l~~L~l~~~~~~t~~~l~ 420 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRSDSLRVLNLSDCRLVTDKGLR 420 (482)
T ss_pred hHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccCCccceEecccCccccccchH
Confidence 111223456677777777776632221 13334445442 111111 111112667777766434433322
Q ss_pred cccC-CCCCCeeeccCccC
Q 042359 349 SMAS-LCNLKSLNLRGVHL 366 (979)
Q Consensus 349 ~l~~-l~~L~~L~L~~n~l 366 (979)
.... +..++.+++.++..
T Consensus 421 ~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 421 CLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred HHhhhhhccccCCccCccc
Confidence 2222 55566666666543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.45 E-value=0.00091 Score=75.94 Aligned_cols=163 Identities=24% Similarity=0.218 Sum_probs=85.6
Q ss_pred CCCcEEEcccccccccCChhhhhcccCC-CcccEEeccCcccccc----CCccccCCCCCCEEEccCCcccc----cCCc
Q 042359 573 SNLVFLDLSNNLFSGSISPFLCYRINET-KSLNALQLNDNYLNGE----LPDCWMSYQNLKTLKLSNNKFTG----NLPY 643 (979)
Q Consensus 573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~-~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~ 643 (979)
..|+.|+++.|.+.+.....++..+... ..+++|++..|.+++. +...+.....++.++++.|.+.. .++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 3455555555555544333444433333 4455555555555432 23344445566666666665520 1122
Q ss_pred ccC----CCCCccEEEcCCccccccc----cccccCCCC-CCEEeccCCcccccCChhHHHh---h-hccceeeccCCcc
Q 042359 644 SMG----SLTSLVWLHLGENRLSGNI----LVSLKNCTA-LESLDVGENEFVGNIPTWIGER---F-SRMVVLILRSNKF 710 (979)
Q Consensus 644 ~l~----~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~L~~N~l~~~ip~~~~~~---l-~~L~~L~L~~n~l 710 (979)
.+. ...++++|.+++|.++... -..+...++ +..|++.+|++.+..-..+... + ..++.++++.|++
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 222 3556777777777765221 123334444 5567777777653311111111 2 3457777777777
Q ss_pred cCCC----CccccCCCCccEEEccCCccc
Q 042359 711 HGPL----PTGLCDLAFLQILDIADNNLS 735 (979)
Q Consensus 711 ~~~~----p~~l~~l~~L~~L~Ls~n~l~ 735 (979)
+..- ...+..++.++.+.+++|.+.
T Consensus 275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 6543 334556677888888888775
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.08 E-value=0.0035 Score=61.25 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=74.0
Q ss_pred cceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEc
Q 042359 792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNL 871 (979)
Q Consensus 792 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 871 (979)
...+.||++.|++. ..-..++-++.|..||+|.|++. ..|+.++++..+..+++..|..+ ..|.+++..+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34578999999987 55566777888999999999999 89999999999999999999998 78999999999999999
Q ss_pred cCCccc
Q 042359 872 SNNNLT 877 (979)
Q Consensus 872 s~N~l~ 877 (979)
-.|+|.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999887
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.40 E-value=0.0029 Score=71.92 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=22.9
Q ss_pred CcEEECcCCcCcccc----ccccCCCCCCcEEeccCCcCccc
Q 042359 385 LESLDLRSDSIYGHL----TDQLGQFKNIVTLDFANNSIVGL 422 (979)
Q Consensus 385 L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~ 422 (979)
++.++++.|.++... ...+..++.++++.+++|.+...
T Consensus 264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 555666666555432 33445566778888888777643
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.90 E-value=0.12 Score=28.46 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=3.0
Q ss_pred CEEECcCCc
Q 042359 843 ESIDFSANQ 851 (979)
Q Consensus 843 ~~LdLs~N~ 851 (979)
+.|||++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.80 E-value=0.077 Score=51.36 Aligned_cols=85 Identities=22% Similarity=0.141 Sum_probs=63.9
Q ss_pred CCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccc-ccCccCEEecCCCCCCcccCcccccCCCCCCe
Q 042359 280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG-NLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358 (979)
Q Consensus 280 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~-~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~ 358 (979)
..++.+|-++..+...--+.+.+++.++.|.+.+|.--+....+.++ -.++|+.|++++|+.+++.-...+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 35788888888877666666778888888888888654322223333 34789999999998888888888888999998
Q ss_pred eeccCc
Q 042359 359 LNLRGV 364 (979)
Q Consensus 359 L~L~~n 364 (979)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 888764
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.99 E-value=0.6 Score=29.02 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=7.1
Q ss_pred CCCCEEECcCCccc
Q 042359 840 RSLESIDFSANQLS 853 (979)
Q Consensus 840 ~~L~~LdLs~N~l~ 853 (979)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.99 E-value=0.6 Score=29.02 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=7.1
Q ss_pred CCCCEEECcCCccc
Q 042359 840 RSLESIDFSANQLS 853 (979)
Q Consensus 840 ~~L~~LdLs~N~l~ 853 (979)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.44 E-value=0.089 Score=51.79 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=53.5
Q ss_pred cceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc
Q 042359 792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG 854 (979)
Q Consensus 792 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~ 854 (979)
+.+..||+|.|.+. ..|.+++++..+..+++-.|..+ ..|.+++.++.++++|+-.|.+.-
T Consensus 65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence 34467899999988 88999999999999999999988 899999999999999999998763
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.51 E-value=1.7 Score=26.98 Aligned_cols=18 Identities=39% Similarity=0.359 Sum_probs=8.0
Q ss_pred CccEEEccCCCCCCCChh
Q 042359 224 SLVELRLANCQLHHFSLL 241 (979)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~ 241 (979)
+|+.|+|++|+++.++..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 344444444444444433
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.51 E-value=1.7 Score=26.98 Aligned_cols=18 Identities=39% Similarity=0.359 Sum_probs=8.0
Q ss_pred CccEEEccCCCCCCCChh
Q 042359 224 SLVELRLANCQLHHFSLL 241 (979)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~ 241 (979)
+|+.|+|++|+++.++..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 344444444444444433
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.45 E-value=0.58 Score=45.52 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=22.3
Q ss_pred CCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCc
Q 042359 148 GNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183 (979)
Q Consensus 148 ~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~ 183 (979)
..++.+|-+++.|..+--+.+.+++.++.|.+.+|.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 346677777777765544555566666666666554
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.55 E-value=0.94 Score=27.51 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=10.0
Q ss_pred CCccEEEccCCccccccC
Q 042359 722 AFLQILDIADNNLSGAIP 739 (979)
Q Consensus 722 ~~L~~L~Ls~n~l~~~~p 739 (979)
++|+.|++++|++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 566777777777664433
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=72.93 E-value=20 Score=39.86 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=11.1
Q ss_pred CCCCCEEeccCCcCcccc
Q 042359 303 FIHLEYLSLSNNSLQGTI 320 (979)
Q Consensus 303 l~~L~~L~L~~n~l~~~i 320 (979)
-+.+++++++.|.+....
T Consensus 164 npr~r~~dls~npi~dkv 181 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKV 181 (553)
T ss_pred cchhhhhccCCCcccccC
Confidence 345677777777665433
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.31 E-value=3.6 Score=25.68 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=8.5
Q ss_pred CCCceEecCCCccccC
Q 042359 172 SNLQFLDLSSNYLLYV 187 (979)
Q Consensus 172 ~~L~~L~Ls~n~i~~~ 187 (979)
.+|++|+++.|+|..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4555555555555443
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.74 E-value=3.3 Score=25.72 Aligned_cols=16 Identities=44% Similarity=0.713 Sum_probs=7.9
Q ss_pred CCCEEeCCCCcceeccC
Q 042359 817 ALQSLNFSYNSFTGRIP 833 (979)
Q Consensus 817 ~L~~L~Ls~N~l~~~ip 833 (979)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 3455555555555 344
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.42 E-value=7.2 Score=24.76 Aligned_cols=13 Identities=46% Similarity=0.715 Sum_probs=7.2
Q ss_pred CCCEEECcCCccc
Q 042359 841 SLESIDFSANQLS 853 (979)
Q Consensus 841 ~L~~LdLs~N~l~ 853 (979)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=50.84 E-value=48 Score=37.07 Aligned_cols=19 Identities=26% Similarity=0.421 Sum_probs=12.5
Q ss_pred CCCccEEEcccCcCCCCCC
Q 042359 528 ASQLKFLDLGQNQIHGPIP 546 (979)
Q Consensus 528 ~~~L~~L~Ls~n~l~~~~~ 546 (979)
.+.+++++++.|.+....|
T Consensus 164 npr~r~~dls~npi~dkvp 182 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVP 182 (553)
T ss_pred cchhhhhccCCCcccccCC
Confidence 4556777777777765444
No 91
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=37.40 E-value=52 Score=23.02 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=9.2
Q ss_pred eEEEeehhHHHHHHHHHHHHHh
Q 042359 930 WLYVSAALGFVVGFWCFMGPLL 951 (979)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~ 951 (979)
....++++..++.+++...+++
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhh
Confidence 3444444444444433333333
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.42 E-value=21 Score=48.86 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=24.7
Q ss_pred eCCCCcceeccCCCCCccCCCCEEECcCCccccc
Q 042359 822 NFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE 855 (979)
Q Consensus 822 ~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 855 (979)
||++|+|+..-+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5778888855555677777888888888877654
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=34.26 E-value=42 Score=31.05 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhcccchh
Q 042359 943 FWCFMGPLLVRRRWRYK 959 (979)
Q Consensus 943 ~~~~~~~~~~~~~~~~~ 959 (979)
+++++++.+++||||.+
T Consensus 72 Ll~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHheeEEeecccC
Confidence 34444445566777764
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.51 E-value=25 Score=40.10 Aligned_cols=65 Identities=26% Similarity=0.385 Sum_probs=39.3
Q ss_pred CCCCCccEEEccCCCCCCCCh--hhhcCCCCCCEEECCCC--CCCCCCCCCcccccCCcccc--CCCCCCEEeccCCcCc
Q 042359 220 NKLPSLVELRLANCQLHHFSL--LATANFSSLTVLDLSDN--QFDKWFIPSWVFGPIPRGLQ--NLTSLRHLGLDSNHFN 293 (979)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~~p~~l~--~l~~L~~L~L~~n~l~ 293 (979)
.+.+.+..++|++|++..+.. ..-...++|..|+|++| .+.. -.++. +...|++|-+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-----------~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-----------ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-----------hhhhhhhcCCCHHHeeecCCccc
Confidence 355667777777776665543 22244577888888888 3331 11222 2235888888888876
Q ss_pred cc
Q 042359 294 SS 295 (979)
Q Consensus 294 ~~ 295 (979)
..
T Consensus 284 ~t 285 (585)
T KOG3763|consen 284 TT 285 (585)
T ss_pred cc
Confidence 54
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.21 E-value=38 Score=20.85 Aligned_cols=15 Identities=33% Similarity=0.262 Sum_probs=8.1
Q ss_pred CccCEEecCCCCCCc
Q 042359 329 TSISWLDLSLNMGIE 343 (979)
Q Consensus 329 ~~L~~L~L~~n~~l~ 343 (979)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455666666654444
No 96
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.47 E-value=60 Score=30.30 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=8.1
Q ss_pred eEEEeehhHHHHHHHHH
Q 042359 930 WLYVSAALGFVVGFWCF 946 (979)
Q Consensus 930 ~~~~~~~~~~~~~~~~~ 946 (979)
...+++++|+.+.++++
T Consensus 49 nIVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLG 65 (154)
T ss_pred cEEEEEEecccHHHHHH
Confidence 34555555544444433
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.45 E-value=27 Score=39.75 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=19.3
Q ss_pred CCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCC
Q 042359 245 NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSN 290 (979)
Q Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n 290 (979)
+.+.+..+.|++|++.++ ..+..--...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~L-------d~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL-------DALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhch-------hhhhHHHHhcchhheeecccc
Confidence 445566666666666543 111111223345555555555
No 98
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.71 E-value=70 Score=27.53 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=8.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHH
Q 042359 1 MAMKPNTSAVLVFDLLLFEILAIA 24 (979)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (979)
||.|. .+++-++||.+++|+
T Consensus 1 MaSK~----~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKA----FLLLGLLLAALLLIS 20 (95)
T ss_pred CchhH----HHHHHHHHHHHHHHH
Confidence 66553 333334444444443
Done!