Query 042359
Match_columns 979
No_of_seqs 860 out of 5204
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:08:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6E-90 2E-94 847.0 50.9 709 40-911 9-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-70 5.6E-75 674.4 44.7 653 223-902 50-719 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 9.9E-58 3.4E-62 556.6 51.7 599 114-882 18-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-55 1.2E-59 534.1 49.5 596 126-901 7-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-51 4.7E-56 495.6 46.0 514 281-881 34-564 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 6.9E-51 2.3E-55 505.3 44.7 247 601-911 338-591 (844)
7 3t6q_A CD180 antigen; protein- 100.0 1.2E-50 4.1E-55 487.4 42.7 515 224-857 34-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-51 2E-55 490.1 39.9 540 199-882 13-563 (606)
9 4eco_A Uncharacterized protein 100.0 2.3E-52 7.7E-57 501.1 23.8 525 40-878 27-601 (636)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-50 1.3E-54 482.9 39.8 538 174-857 13-562 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 1.1E-48 3.8E-53 475.0 29.5 516 37-686 263-864 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 8.6E-47 2.9E-51 468.6 41.6 525 72-690 14-564 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 3.6E-46 1.2E-50 445.4 34.7 509 115-884 22-538 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 2.1E-45 7E-50 438.8 38.6 509 199-899 9-530 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-44 3.7E-49 430.2 33.0 485 282-883 7-516 (549)
16 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-43 5.5E-48 428.6 39.2 528 114-880 45-583 (635)
17 2z81_A CD282 antigen, TOLL-lik 100.0 7.5E-44 2.6E-48 423.0 34.0 480 114-690 19-514 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-43 3.9E-48 418.1 22.9 459 307-881 3-485 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 9.7E-43 3.3E-47 410.1 27.0 466 226-857 3-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 8.2E-43 2.8E-47 423.6 25.3 333 398-878 480-841 (876)
21 4eco_A Uncharacterized protein 100.0 3.7E-43 1.3E-47 421.2 19.2 253 600-899 329-599 (636)
22 4g8a_A TOLL-like receptor 4; l 100.0 5.8E-39 2E-43 388.6 42.8 501 281-897 53-577 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7E-41 2.4E-45 397.5 25.3 460 330-882 32-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-39 3.9E-44 387.1 28.9 470 222-857 30-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.5E-38 5E-43 364.2 24.0 402 279-882 10-416 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 1.1E-37 3.7E-42 360.7 31.0 381 407-886 30-417 (455)
27 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-38 4.1E-43 347.5 19.3 129 39-184 2-137 (313)
28 1jl5_A Outer protein YOPM; leu 100.0 1.3E-38 4.6E-43 364.5 20.2 396 385-901 13-410 (454)
29 3v47_A TOLL-like receptor 5B a 100.0 3.4E-36 1.2E-40 348.2 29.8 396 250-740 13-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-35 1.1E-39 336.8 30.7 196 109-365 28-223 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-34 5.6E-39 330.9 26.8 350 385-883 44-393 (457)
32 1ogq_A PGIP-2, polygalacturona 100.0 6.4E-35 2.2E-39 318.0 18.9 258 601-908 50-312 (313)
33 1o6v_A Internalin A; bacterial 100.0 8.6E-33 2.9E-37 319.7 31.2 347 405-879 44-390 (466)
34 1o6v_A Internalin A; bacterial 100.0 1.1E-32 3.7E-37 318.9 29.5 349 429-904 44-392 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 3.4E-33 1.2E-37 324.8 23.6 301 530-881 33-337 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 2E-31 6.8E-36 309.9 28.7 310 114-470 25-334 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 5.7E-31 2E-35 297.3 24.6 236 600-901 140-376 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 1.9E-30 6.5E-35 293.1 27.9 290 120-469 42-331 (390)
39 3oja_B Anopheles plasmodium-re 100.0 9.7E-31 3.3E-35 311.8 25.3 238 600-903 146-384 (597)
40 4fmz_A Internalin; leucine ric 100.0 1.3E-29 4.5E-34 281.5 31.8 308 118-469 39-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 3.3E-30 1.1E-34 307.2 28.5 243 121-444 49-291 (597)
42 4fmz_A Internalin; leucine ric 100.0 5.7E-30 2E-34 284.5 24.3 302 504-877 44-346 (347)
43 4fcg_A Uncharacterized protein 100.0 1.4E-30 4.8E-35 285.4 15.6 277 38-365 22-312 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-33 1E-37 324.2 -7.5 362 407-855 3-413 (461)
45 1xku_A Decorin; proteoglycan, 100.0 3.4E-28 1.2E-32 267.8 27.4 266 554-877 33-306 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-28 6.2E-33 270.2 24.0 243 573-874 78-330 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-31 7.1E-36 308.6 -0.4 137 124-260 4-155 (461)
48 1xku_A Decorin; proteoglycan, 100.0 4.2E-28 1.4E-32 267.1 25.6 288 505-875 32-330 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 9.2E-28 3.1E-32 264.5 26.4 292 123-467 33-331 (332)
50 4fcg_A Uncharacterized protein 100.0 3.6E-28 1.2E-32 266.3 17.2 227 600-877 80-314 (328)
51 3ogk_B Coronatine-insensitive 99.9 5.5E-30 1.9E-34 306.7 -1.8 427 115-561 65-547 (592)
52 2z80_A TOLL-like receptor 2, v 99.9 7.4E-28 2.5E-32 267.7 15.1 279 551-882 30-319 (353)
53 2z66_A Variable lymphocyte rec 99.9 4.2E-27 1.5E-31 256.1 19.5 233 601-881 28-265 (306)
54 2z66_A Variable lymphocyte rec 99.9 1.4E-27 4.8E-32 259.9 15.1 275 556-882 11-292 (306)
55 1wwl_A Monocyte differentiatio 99.9 8.2E-28 2.8E-32 262.0 8.1 244 574-878 44-310 (312)
56 2z80_A TOLL-like receptor 2, v 99.9 1.2E-26 4E-31 258.1 16.7 265 114-448 45-318 (353)
57 3ogk_B Coronatine-insensitive 99.9 3.8E-28 1.3E-32 290.8 5.0 234 496-732 285-548 (592)
58 3zyi_A Leucine-rich repeat-con 99.9 9.9E-26 3.4E-30 259.4 24.4 231 601-880 75-306 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 1.2E-25 4.1E-30 257.8 23.8 230 601-879 64-294 (440)
60 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-26 9E-31 247.0 16.7 228 604-881 14-242 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 1.5E-25 5E-30 257.9 23.5 250 554-855 56-305 (452)
62 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-26 7.9E-31 247.4 14.9 252 576-882 14-266 (285)
63 3zyj_A Leucine-rich repeat-con 99.9 2.3E-25 8E-30 255.3 23.0 250 554-855 45-294 (440)
64 1wwl_A Monocyte differentiatio 99.9 4.8E-27 1.6E-31 256.0 7.9 247 599-901 41-310 (312)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-24 8.4E-29 253.4 26.1 261 531-882 42-302 (622)
66 3oja_A Leucine-rich immune mol 99.9 2.5E-25 8.7E-30 257.1 15.6 223 598-881 31-255 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2E-26 6.8E-31 251.7 4.8 128 601-739 34-161 (317)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-25 5E-30 244.8 11.6 263 555-882 13-281 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-24 4.4E-29 255.8 19.4 292 60-455 10-307 (622)
70 2z62_A TOLL-like receptor 4, v 99.9 3.7E-24 1.3E-28 229.0 20.9 212 625-884 28-244 (276)
71 3oja_A Leucine-rich immune mol 99.9 3E-25 1E-29 256.5 10.8 236 572-872 33-270 (487)
72 2p1m_B Transport inhibitor res 99.9 5.7E-26 1.9E-30 272.1 -0.8 108 600-708 431-541 (594)
73 2p1m_B Transport inhibitor res 99.9 5.7E-26 2E-30 272.1 -3.8 124 241-365 60-195 (594)
74 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.9E-27 215.6 22.6 214 69-339 2-215 (270)
75 2o6q_A Variable lymphocyte rec 99.9 9E-23 3.1E-27 217.2 20.9 205 627-881 18-222 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 8.6E-23 2.9E-27 218.4 19.8 213 601-857 28-241 (276)
77 3rfs_A Internalin B, repeat mo 99.9 1.7E-23 5.9E-28 222.9 12.3 223 601-883 19-241 (272)
78 1p9a_G Platelet glycoprotein I 99.9 2.8E-22 9.5E-27 215.1 20.0 204 622-879 7-210 (290)
79 2ca6_A RAN GTPase-activating p 99.9 8.2E-25 2.8E-29 246.4 -0.1 240 596-881 27-320 (386)
80 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.6E-27 216.8 14.8 207 600-864 40-246 (272)
81 3goz_A Leucine-rich repeat-con 99.9 1.2E-23 4E-28 234.3 4.9 256 578-879 3-299 (362)
82 1p9a_G Platelet glycoprotein I 99.9 1.1E-21 3.8E-26 210.4 19.3 204 598-855 7-210 (290)
83 4glp_A Monocyte differentiatio 99.9 1E-22 3.5E-27 221.6 11.1 231 574-878 65-308 (310)
84 3goz_A Leucine-rich repeat-con 99.9 3.2E-23 1.1E-27 230.8 5.2 244 572-860 21-304 (362)
85 3m19_A Variable lymphocyte rec 99.9 7.3E-22 2.5E-26 207.7 15.3 212 626-911 15-232 (251)
86 2ast_B S-phase kinase-associat 99.9 1.2E-22 4E-27 224.3 7.5 251 573-882 47-311 (336)
87 2ca6_A RAN GTPase-activating p 99.9 2.8E-23 9.5E-28 233.8 2.3 239 572-857 31-320 (386)
88 2xwt_C Thyrotropin receptor; s 99.8 5.4E-21 1.8E-25 199.5 15.4 196 626-874 32-236 (239)
89 2ast_B S-phase kinase-associat 99.8 3.3E-22 1.1E-26 220.7 4.6 234 573-862 70-315 (336)
90 1h6u_A Internalin H; cell adhe 99.8 9.7E-21 3.3E-25 205.3 15.7 193 623-878 39-231 (308)
91 4glp_A Monocyte differentiatio 99.8 3.4E-21 1.2E-25 209.5 12.0 160 573-735 91-264 (310)
92 1h6u_A Internalin H; cell adhe 99.8 9.9E-21 3.4E-25 205.2 15.1 192 600-854 40-231 (308)
93 3m19_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 194.4 18.1 181 601-855 14-194 (251)
94 2xwt_C Thyrotropin receptor; s 99.8 1.4E-20 4.8E-25 196.3 14.0 197 602-851 32-237 (239)
95 3cvr_A Invasion plasmid antige 99.8 7.4E-20 2.5E-24 212.5 15.4 114 602-735 60-173 (571)
96 3cvr_A Invasion plasmid antige 99.8 6.1E-20 2.1E-24 213.2 13.5 181 626-881 60-247 (571)
97 4ay9_X Follicle-stimulating ho 99.8 7.3E-19 2.5E-23 194.5 17.3 223 601-875 30-257 (350)
98 2o6s_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 181.4 12.6 81 795-882 103-183 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 8.1E-19 2.8E-23 179.8 14.0 155 677-881 15-170 (220)
100 2o6s_A Variable lymphocyte rec 99.8 7.3E-19 2.5E-23 179.0 13.0 64 795-865 127-190 (208)
101 4ay9_X Follicle-stimulating ho 99.8 2.1E-18 7.3E-23 190.7 16.3 242 555-851 12-257 (350)
102 2v9t_B SLIT homolog 2 protein 99.8 4.6E-18 1.6E-22 174.2 14.3 154 676-879 14-167 (220)
103 3e6j_A Variable lymphocyte rec 99.7 1E-17 3.4E-22 173.0 14.5 155 676-881 22-176 (229)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-17 3.5E-22 171.5 14.4 136 676-857 35-170 (220)
105 1h6t_A Internalin B; cell adhe 99.7 3.1E-18 1.1E-22 183.7 10.1 189 603-878 26-214 (291)
106 1m9s_A Internalin B; cell inva 99.7 3.2E-18 1.1E-22 201.3 10.9 191 574-831 22-212 (605)
107 1dce_A Protein (RAB geranylger 99.7 3.2E-20 1.1E-24 217.0 -7.3 154 661-883 397-552 (567)
108 3e6j_A Variable lymphocyte rec 99.7 8.7E-17 3E-21 165.9 18.6 164 63-318 10-173 (229)
109 1dce_A Protein (RAB geranylger 99.7 2.7E-20 9.4E-25 217.6 -8.9 202 600-871 348-567 (567)
110 1h6t_A Internalin B; cell adhe 99.7 4.3E-17 1.5E-21 174.8 15.9 172 119-317 42-213 (291)
111 1m9s_A Internalin B; cell inva 99.7 4.6E-17 1.6E-21 191.4 17.3 148 572-736 42-189 (605)
112 2xot_A Amphoterin-induced prot 99.7 1E-17 3.4E-22 186.1 9.8 111 628-742 21-132 (361)
113 1w8a_A SLIT protein; signaling 99.7 3.2E-17 1.1E-21 164.0 10.8 132 701-881 11-143 (192)
114 2v9t_B SLIT homolog 2 protein 99.7 8.4E-17 2.9E-21 164.8 14.2 154 628-855 14-167 (220)
115 4ezg_A Putative uncharacterize 99.7 6.7E-17 2.3E-21 162.7 11.3 154 647-878 42-195 (197)
116 4b8c_D Glucose-repressible alc 99.7 1.1E-17 3.6E-22 202.2 5.4 191 607-854 207-405 (727)
117 4b8c_D Glucose-repressible alc 99.7 7.6E-18 2.6E-22 203.4 3.7 193 630-880 206-407 (727)
118 1xeu_A Internalin C; cellular 99.7 3.8E-17 1.3E-21 172.3 8.5 80 794-879 108-187 (263)
119 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.6E-21 160.4 11.1 156 621-854 40-195 (197)
120 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5.3E-21 176.5 12.6 177 556-736 22-203 (361)
121 1w8a_A SLIT protein; signaling 99.7 1.5E-16 5.3E-21 159.0 9.2 132 676-857 11-143 (192)
122 1xeu_A Internalin C; cellular 99.6 5.3E-16 1.8E-20 163.5 13.0 128 118-260 36-163 (263)
123 2wfh_A SLIT homolog 2 protein 99.6 5.9E-15 2E-19 147.4 14.1 130 701-880 13-142 (193)
124 2o6r_A Variable lymphocyte rec 99.6 8.6E-15 2.9E-19 144.4 12.8 134 700-882 9-142 (177)
125 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.6E-20 147.7 7.9 83 795-877 74-160 (168)
126 2ell_A Acidic leucine-rich nuc 99.6 5.4E-15 1.8E-19 144.5 11.0 138 672-859 23-165 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.2E-20 144.6 6.8 129 697-873 16-149 (149)
128 3sb4_A Hypothetical leucine ri 99.6 2.3E-15 8E-20 164.8 8.2 89 385-476 228-317 (329)
129 3sb4_A Hypothetical leucine ri 99.5 5.8E-15 2E-19 161.6 9.6 219 600-870 100-327 (329)
130 2wfh_A SLIT homolog 2 protein 99.5 4.4E-14 1.5E-18 141.0 11.8 129 676-855 13-141 (193)
131 2o6r_A Variable lymphocyte rec 99.5 6.2E-14 2.1E-18 138.2 11.7 132 676-857 10-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.5 2.2E-14 7.7E-19 136.9 7.5 127 601-730 17-148 (149)
133 1ds9_A Outer arm dynein; leuci 99.5 5.5E-16 1.9E-20 156.1 -5.4 132 692-877 43-185 (198)
134 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.6E-20 151.6 -4.1 162 621-854 14-186 (198)
135 3g39_A Variable lymphocyte rec 99.4 2.8E-13 9.4E-18 132.2 10.9 89 794-882 32-120 (170)
136 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 6.9E-18 134.3 8.3 81 795-877 67-153 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.4 1.5E-13 5.1E-18 135.3 6.5 136 668-855 14-155 (176)
138 2r9u_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 129.3 11.1 88 794-881 35-122 (174)
139 4fdw_A Leucine rich hypothetic 99.4 2.9E-11 1E-15 134.9 22.4 222 224-490 158-380 (401)
140 4fdw_A Leucine rich hypothetic 99.4 2.4E-11 8.1E-16 135.6 21.6 204 281-501 158-366 (401)
141 3g39_A Variable lymphocyte rec 99.3 3.8E-12 1.3E-16 124.1 11.1 109 700-857 11-119 (170)
142 4fs7_A Uncharacterized protein 99.3 6.7E-11 2.3E-15 132.7 22.6 311 116-464 64-374 (394)
143 2r9u_A Variable lymphocyte rec 99.3 8.7E-12 3E-16 121.9 11.1 106 701-855 15-120 (174)
144 4fs7_A Uncharacterized protein 99.3 1.7E-10 5.9E-15 129.3 22.7 221 401-683 156-376 (394)
145 3un9_A NLR family member X1; l 99.3 2E-13 6.9E-18 150.9 -2.8 63 673-735 101-168 (372)
146 2ifg_A High affinity nerve gro 99.2 4.6E-11 1.6E-15 131.7 10.2 84 795-879 34-118 (347)
147 3un9_A NLR family member X1; l 99.0 3.7E-11 1.3E-15 132.7 1.9 42 403-444 207-252 (372)
148 2ifg_A High affinity nerve gro 99.0 4.3E-10 1.5E-14 123.9 10.4 59 795-854 59-117 (347)
149 4gt6_A Cell surface protein; l 99.0 1.1E-08 3.7E-13 114.7 19.2 128 597-732 261-388 (394)
150 4gt6_A Cell surface protein; l 98.9 8.8E-08 3E-12 107.2 24.9 296 117-468 57-369 (394)
151 2ra8_A Uncharacterized protein 98.7 8.3E-09 2.8E-13 112.7 4.5 81 793-875 253-341 (362)
152 2ra8_A Uncharacterized protein 98.7 2.4E-08 8.2E-13 109.1 7.7 163 272-467 164-341 (362)
153 4h09_A Hypothetical leucine ri 98.6 4.1E-06 1.4E-10 93.1 22.3 310 119-478 42-354 (379)
154 4h09_A Hypothetical leucine ri 98.5 6.7E-06 2.3E-10 91.3 23.6 47 143-191 41-87 (379)
155 3rw6_A Nuclear RNA export fact 98.5 1E-08 3.4E-13 105.9 -2.0 141 70-211 76-234 (267)
156 3rw6_A Nuclear RNA export fact 98.4 2.9E-08 9.8E-13 102.5 -0.3 63 793-857 171-237 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 1.2E-07 4.3E-12 93.2 0.9 113 573-685 36-163 (185)
158 1io0_A Tropomodulin; LRR prote 98.2 4.1E-07 1.4E-11 89.4 2.0 42 219-260 61-106 (185)
159 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.5E-10 76.4 3.9 85 280-365 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.8E-05 6.1E-10 75.4 3.1 34 124-158 62-95 (176)
161 3rfe_A Platelet glycoprotein I 97.0 0.00076 2.6E-08 61.2 6.2 57 820-878 12-69 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00014 4.9E-09 70.6 1.2 113 573-685 41-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00061 2.1E-08 66.2 2.6 44 217-260 64-111 (197)
164 3rfe_A Platelet glycoprotein I 96.4 0.0038 1.3E-07 56.6 5.9 58 795-854 11-69 (130)
165 2lz0_A Uncharacterized protein 29.6 94 0.0032 25.8 5.8 39 400-439 13-51 (100)
166 2lz0_A Uncharacterized protein 28.7 60 0.0021 27.0 4.4 49 417-467 6-54 (100)
167 2k1k_A Ephrin type-A receptor 22.0 51 0.0017 21.9 2.1 11 934-944 15-25 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-90 Score=847.03 Aligned_cols=709 Identities=32% Similarity=0.474 Sum_probs=482.8
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeccCCCCcEEEEECCCCCCCCchhhHHHhhccccccc---cc
Q 042359 40 CLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGK---IN 116 (979)
Q Consensus 40 c~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~---~~ 116 (979)
+.++|++||++||+++.||. .+++|+.+++||.|+||+|+ .|||++|||++ ..+.|. +|
T Consensus 9 ~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~---------------~~l~g~~~~l~ 70 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSS---------------KPLNVGFSAVS 70 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTT---------------SCCCEEHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCC---------------CCcCCccCccC
Confidence 45889999999999999988 89999988899999999998 79999999998 478888 89
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCcc--ccCCCCCCceEecCCCccccCCcccccc
Q 042359 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPH--HLGNLSNLQFLDLSSNYLLYVDNFWWLS 194 (979)
Q Consensus 117 ~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~--~~~~L~~L~~L~Ls~n~i~~~~~~~~l~ 194 (979)
+++.++++|+.++++.+.+.. +|+.++++++|++|||++|.+.+.+|. .++++++|++|++++|.+........+.
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred hhHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 999999999999999998753 678999999999999999999998888 9999999999999999876544333335
Q ss_pred CCCCCCEEEccCccCCCCchhh-hhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCC
Q 042359 195 GLSFLEHLDLRSVNLSKAFDWL-MVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP 273 (979)
Q Consensus 195 ~l~~L~~L~l~~n~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p 273 (979)
++++|++|++++|.+++..... ..+.++++|++|++++|.+.+..+. ..+
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l--------------------------- 199 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRC--------------------------- 199 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC---------------------------
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccC---------------------------
Confidence 5666666666666555432111 1134444455555554444433321 344
Q ss_pred ccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCC
Q 042359 274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL 353 (979)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l 353 (979)
++|++|++++|.+++.+|. ++++++|++|++++|.+++.+ +..++.+++|++|++++| .+.+.+|.. .+
T Consensus 200 ------~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l 268 (768)
T 3rgz_A 200 ------VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSN-QFVGPIPPL--PL 268 (768)
T ss_dssp ------TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSS-CCEESCCCC--CC
T ss_pred ------CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCC-cccCccCcc--cc
Confidence 4444444444444444433 444444444444444444333 444444444444444444 444433332 34
Q ss_pred CCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCccc-ccCCCC
Q 042359 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES-LGQLST 432 (979)
Q Consensus 354 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~ 432 (979)
++|++|++++|.+.+.+|. .+.....+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus 269 ~~L~~L~L~~n~l~~~ip~----~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPD----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344 (768)
T ss_dssp TTCCEEECCSSEEEESCCC----CSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred CCCCEEECcCCccCCccCH----HHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence 4444444444444444333 22222112445555555554455555555555555555555555555543 555555
Q ss_pred CCEEEcCCCcCccccChhhhcCCC-CCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhC--CCCccEE
Q 042359 433 LRVLRINDNKLNGTLSAIHFANLT-KLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYS--QKHLQFL 509 (979)
Q Consensus 433 L~~L~L~~n~l~~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~--~~~L~~L 509 (979)
|++|++++|++.+.+|. .+.+++ +|+.|++++|.+... +|.++.. +++|++|
T Consensus 345 L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~------------------------~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGP------------------------ILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEECCCT-THHHHTTTCSEEECCSSEEEEE------------------------CCTTTTCSTTCCCCEE
T ss_pred CCEEeCcCCccCccccH-HHHhhhcCCcEEEccCCCcCCC------------------------cChhhhhcccCCccEE
Confidence 55566555555555544 344443 555555555555432 2322222 3445555
Q ss_pred EccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCccCCCCcEEEccccccccc
Q 042359 510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS 588 (979)
Q Consensus 510 ~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ 588 (979)
++++|.+.+..|..+ ..+++|++|++++|.+++.+| .+..+ ++|++|++++|.+.+.
T Consensus 400 ~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l---------------------~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSL---------------------SKLRDLKLWLNMLEGE 457 (768)
T ss_dssp ECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGC---------------------TTCCEEECCSSCCCSC
T ss_pred ECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcC---------------------CCCCEEECCCCcccCc
Confidence 555555555444433 334555555555555555544 33333 3444444555555555
Q ss_pred CChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccc
Q 042359 589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS 668 (979)
Q Consensus 589 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 668 (979)
+|..+. .+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..
T Consensus 458 ~p~~~~----~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 458 IPQELM----YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CCGGGG----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred CCHHHc----CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 554432 3677777777777777777777777777778888877777777777777777888888888877777777
Q ss_pred ccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCC----------------------cccCCCCccccCCCCccE
Q 042359 669 LKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN----------------------KFHGPLPTGLCDLAFLQI 726 (979)
Q Consensus 669 l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n----------------------~l~~~~p~~l~~l~~L~~ 726 (979)
+.++++|++|++++|+++|.+|.+++ ....+..+++..+ .+.+..|..+..++.++.
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HcCCCCCCEEECCCCccCCcCChHHh-cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 77778888888888888777777776 3444444333221 234445555556666666
Q ss_pred EEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccc
Q 042359 727 LDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 806 (979)
Q Consensus 727 L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~ 806 (979)
++++.|.+.|.+|..+++++.+ +.|||++|+++|
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L----------------------------------------------~~LdLs~N~l~g 646 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSM----------------------------------------------MFLDMSYNMLSG 646 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCC----------------------------------------------CEEECCSSCCBS
T ss_pred cccccceecccCchhhhccccc----------------------------------------------cEEECcCCcccc
Confidence 7777777777777766655554 899999999999
Q ss_pred cccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccC
Q 042359 807 KIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQL 886 (979)
Q Consensus 807 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 886 (979)
.+|.+++++++|+.|||++|+++|.||..++++++|++||||+|+++|.+|+.++.+++|++||||+|+++|+||..+++
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSG
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCC-CCCCCCCCCCCCCC
Q 042359 887 QSFDVSSFAGN-DLCGAPLPKNCTEN 911 (979)
Q Consensus 887 ~~~~~~~~~~n-~lcg~~~~~~c~~~ 911 (979)
++++..+|.|| ++||.|+. .|...
T Consensus 727 ~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 727 ETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp GGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred ccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 99999999999 89999987 88644
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-70 Score=674.41 Aligned_cols=653 Identities=28% Similarity=0.397 Sum_probs=548.6
Q ss_pred CCccEEEccCCCCCCC---ChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCch-
Q 042359 223 PSLVELRLANCQLHHF---SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN- 298 (979)
Q Consensus 223 ~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~- 298 (979)
.+++.|+|+++.+.+. .+..+..++.|+.++++.+.+. .+|..++.+++|++|++++|.+++.+|.
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~----------~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN----------GSVSGFKCSASLTSLDLSRNSLSGPVTTL 119 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE----------ECCCCCCCCTTCCEEECCSSEEEEEGGGG
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC----------CCchhhccCCCCCEEECCCCcCCCcCCCh
Confidence 4567777777777765 5667778888888888877653 2567788888899999998888888887
Q ss_pred -hhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCccc---ccCCCCCCeeeccCccCCcccchhh
Q 042359 299 -WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRS---MASLCNLKSLNLRGVHLSQEISEIL 374 (979)
Q Consensus 299 -~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~ 374 (979)
.++++++|++|++++|.+.+.++...+.++++|++|++++| .+.+..+.. +.++++|++|++++|.+.+..+.
T Consensus 120 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-- 196 (768)
T 3rgz_A 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-- 196 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--
T ss_pred HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--
Confidence 88888899999999888887663434478888999999988 788877776 78888999999999888776542
Q ss_pred hhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcC
Q 042359 375 DIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFAN 454 (979)
Q Consensus 375 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~ 454 (979)
..++. |++|++++|.+++.+|. ++.+++|++|++++|.+++.+|..+..+++|++|++++|++.+.++.. .
T Consensus 197 ----~~l~~-L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~ 267 (768)
T 3rgz_A 197 ----SRCVN-LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---P 267 (768)
T ss_dssp ----TTCTT-CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---C
T ss_pred ----ccCCc-CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---c
Confidence 33444 99999999999887777 889999999999999999888888999999999999999998777753 7
Q ss_pred CCCCcEEEccCCcccccccCCCCCc-ccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccE
Q 042359 455 LTKLSWFRVDGNKLTLGVKHDWIPP-FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKF 533 (979)
Q Consensus 455 l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 533 (979)
+++|++|++++|.++...+..+... ++|++|++++|.+.+.+|.++..+++|++|++++|.+.+.+|...+..+++|++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 8899999999999886666666554 889999999999999999999999999999999999998888887788999999
Q ss_pred EEcccCcCCCCCC-Cccccc-CCcEEEeecccCCCCCCcc-----CCCCcEEEcccccccccCChhhhhcccCCCcccEE
Q 042359 534 LDLGQNQIHGPIP-NLTEFT-GLLILSVYSNNMSGPLPLI-----SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNAL 606 (979)
Q Consensus 534 L~Ls~n~l~~~~~-~l~~~~-~L~~L~l~~n~l~~~~~~~-----~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L 606 (979)
|++++|.+++.+| .+..++ +|+.|++++|.+++.+|.. .++|++|++++|.+++.+|..+. .+++|+.|
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L 423 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS----NCSELVSL 423 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG----GCTTCCEE
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh----cCCCCCEE
Confidence 9999999998887 677777 9999999999998877654 46799999999999999887664 48999999
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCccc
Q 042359 607 QLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV 686 (979)
Q Consensus 607 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 686 (979)
++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|+++
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCc
Q 042359 687 GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPI 766 (979)
Q Consensus 687 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 766 (979)
+.+|.++. .+++|++|++++|+++|.+|..++.+++|+.|++++|+++|.+|.++.....+.............+....
T Consensus 504 ~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 504 GEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp SCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 99999998 79999999999999999999999999999999999999999999999887766433221110000000000
Q ss_pred ccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEE
Q 042359 767 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESID 846 (979)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~Ld 846 (979)
...............|........+..+..++++.|.+.|.+|..++++++|+.||||+|+++|.+|.+++++++|+.||
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 00000000001112233333334556667889999999999999999999999999999999999999999999999999
Q ss_pred CcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCC-ccCCCccccccCCCCCCCC
Q 042359 847 FSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCGA 902 (979)
Q Consensus 847 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~lcg~ 902 (979)
|++|+++|.+|+.++++++|++||||+|+++|.||.. ..+..+...++++|.+.|.
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 9999999999999999999999999999999999965 5666777778899988775
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.9e-58 Score=556.59 Aligned_cols=599 Identities=17% Similarity=0.181 Sum_probs=394.6
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL 193 (979)
Q Consensus 114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l 193 (979)
.+|..+. +++++|+|++|.++++ .+..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+..++..
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--- 91 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK--- 91 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT---
T ss_pred ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh---
Confidence 3555544 6888888888888875 466788888888888888888887788888888888888888876655431
Q ss_pred cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCC
Q 042359 194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP 273 (979)
Q Consensus 194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p 273 (979)
.+..+++|++|++++|+++++++..++++++|++|++++|.++ +..|
T Consensus 92 ------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~ 138 (680)
T 1ziw_A 92 ------------------------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS---------STKL 138 (680)
T ss_dssp ------------------------TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS---------CCCC
T ss_pred ------------------------hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc---------ccCc
Confidence 2445666666666666666666666777777777777777776 4455
Q ss_pred ccccCCCCCCEEeccCCcCcccCchhhc--cCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCccccc
Q 042359 274 RGLQNLTSLRHLGLDSNHFNSSIPNWLY--RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA 351 (979)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~ 351 (979)
..++++++|++|++++|.+++..+..+. .+++|++|++++|.+++.. +..+..+++|+.|+++++ .+.+.....+.
T Consensus 139 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~ 216 (680)
T 1ziw_A 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNV-QLGPSLTEKLC 216 (680)
T ss_dssp CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC-TTGGGGSSEECEEECTTC-CCHHHHHHHHH
T ss_pred hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC-hhhhhhhhhhhhhhcccc-ccChhhHHHHH
Confidence 5666777777777777777666555543 3466777777777666433 566666666666666666 44322111110
Q ss_pred ---CCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCC--CcEEeccCCcCcccCccc
Q 042359 352 ---SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKN--IVTLDFANNSIVGLIPES 426 (979)
Q Consensus 352 ---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~p~~ 426 (979)
..++ |+.|++++|.+.+..|..+..++. |++|++++|.+++..|..
T Consensus 217 ~~l~~~~-----------------------------L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 267 (680)
T 1ziw_A 217 LELANTS-----------------------------IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267 (680)
T ss_dssp HHHTTSC-----------------------------CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred HHhhhcc-----------------------------ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc
Confidence 1234 455555555555444445544432 555666655555555555
Q ss_pred ccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCc
Q 042359 427 LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHL 506 (979)
Q Consensus 427 l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L 506 (979)
++.+++|++|++++|++.+..+ ..|.++++|+.|++++|........ ..+.. .-...+..+++|
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~-----~~lp~----------i~~~~~~~l~~L 331 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISL-----ASLPK----------IDDFSFQWLKCL 331 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC-----------CCE----------ECTTTTTTCTTC
T ss_pred ccCcccccEeeCCCCccCccCh-hhhcCCCCccEEeccchhhhccccc-----ccccc----------cChhhcccCCCC
Confidence 5555566666666665553332 2455555555555554432210000 00000 001123344555
Q ss_pred cEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEccccccc
Q 042359 507 QFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFS 586 (979)
Q Consensus 507 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~ 586 (979)
++|++++|.+.+..+..+ ..+++|++|++++|.+..... +
T Consensus 332 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l----------------------~----------------- 371 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTL----------------------T----------------- 371 (680)
T ss_dssp CEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBSCCCEE----------------------C-----------------
T ss_pred CEEECCCCccCCCChhHh-ccccCCcEEECCCCchhhhhc----------------------c-----------------
Confidence 555555555555433322 334444444444443321100 0
Q ss_pred ccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCC-cccCCCCCccEEEcCCccccccc
Q 042359 587 GSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLP-YSMGSLTSLVWLHLGENRLSGNI 665 (979)
Q Consensus 587 ~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~ 665 (979)
...+.. ...++|+.|++++|++.+..|..+..+++|++|++++|++++.+| ..+..+++|++|++++|++.+..
T Consensus 372 ---~~~f~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 372 ---NETFVS--LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp ---TTTTGG--GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred ---hhhhcc--cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 000000 012567778888888877777788888888888888888887666 57788888888888888888877
Q ss_pred cccccCCCCCCEEeccCCccc--ccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchh
Q 042359 666 LVSLKNCTALESLDVGENEFV--GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCIN 743 (979)
Q Consensus 666 p~~l~~l~~L~~L~L~~N~l~--~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 743 (979)
+..+..+++|+.|++++|.+. +.+|..+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+.
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred hhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc
Confidence 888888888888888888876 56777776 688899999999988877777888999999999999998754322111
Q ss_pred hcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeC
Q 042359 744 NLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNF 823 (979)
Q Consensus 744 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L 823 (979)
.-+ ......++.|+.|||++|+++...+..|+++++|+.|+|
T Consensus 526 ~~~--------------------------------------~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 526 GGP--------------------------------------IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp TSC--------------------------------------CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCc--------------------------------------chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 000 000112445689999999999444456899999999999
Q ss_pred CCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCC-CCCCCCEEEccCCcccccCCC
Q 042359 824 SYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMS-SLTFLNHLNLSNNNLTGKIPS 882 (979)
Q Consensus 824 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~ 882 (979)
++|++++..|..|..+++|+.|||++|++++..|..+. .+++|+.+++++|++.+..+.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999977777789999999999999999998888787 789999999999999998764
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-55 Score=534.10 Aligned_cols=596 Identities=22% Similarity=0.249 Sum_probs=454.2
Q ss_pred CEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEcc
Q 042359 126 SYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLR 205 (979)
Q Consensus 126 ~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~ 205 (979)
+.+|.++++++. +|..+. +++++|+|++|.+++..+..|+++++|++|++++|.+..+..
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------- 66 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP---------------- 66 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT----------------
T ss_pred CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH----------------
Confidence 578888888885 576654 789999999999998777788899999999998887655432
Q ss_pred CccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEE
Q 042359 206 SVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHL 285 (979)
Q Consensus 206 ~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L 285 (979)
..+.++++|++|++++|+++++++..++.+++|++|++++|.++ +..|..++++++|++|
T Consensus 67 -----------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 67 -----------ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ---------KIKNNPFVKQKNLITL 126 (680)
T ss_dssp -----------THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCSCTTTTCTTCCEE
T ss_pred -----------HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC---------ccChhHccccCCCCEE
Confidence 23456778888888888888888888899999999999999887 3345678889999999
Q ss_pred eccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccc--ccCccCEEecCCCCCCcccCcccccCCCCCCeeeccC
Q 042359 286 GLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG--NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363 (979)
Q Consensus 286 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~ 363 (979)
++++|.+++..|..+.++++|++|++++|.+++.. +..++ .+++|++|++++| .+.+..|..+..+++|+.|++.+
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTT
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccc
Confidence 99999998888888888999999999999887543 55544 4578899999888 78888888888888888887777
Q ss_pred ccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCC--CCEEEcCCC
Q 042359 364 VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLST--LRVLRINDN 441 (979)
Q Consensus 364 n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n 441 (979)
+.+...... .++..+ ..++|++|++++|.+.+..|..+..++. |++|++++|
T Consensus 205 ~~l~~~~~~-------------------------~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 205 VQLGPSLTE-------------------------KLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp CCCHHHHHH-------------------------HHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred cccChhhHH-------------------------HHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence 765432221 011112 3478999999999999999988888755 999999999
Q ss_pred cCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCc
Q 042359 442 KLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFP 521 (979)
Q Consensus 442 ~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~ 521 (979)
++.+.. ...|..+++|+.|++++|.+.... |..+..+++|+.|++++|...+..+
T Consensus 259 ~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~------------------------~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 259 NLNVVG-NDSFAWLPQLEYFFLEYNNIQHLF------------------------SHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCCEEC-TTTTTTCTTCCEEECCSCCBSEEC------------------------TTTTTTCTTCCEEECTTCBCCC---
T ss_pred CcCccC-cccccCcccccEeeCCCCccCccC------------------------hhhhcCCCCccEEeccchhhhcccc
Confidence 998544 446888888888888887766433 3344445555555555443332111
Q ss_pred hHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCC
Q 042359 522 IRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK 601 (979)
Q Consensus 522 ~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 601 (979)
.. .++.+. .. .+.. +++|++|++++|.+.+..+.. +..++
T Consensus 314 ~~---~lp~i~-----~~-------~~~~---------------------l~~L~~L~l~~n~l~~~~~~~----~~~l~ 353 (680)
T 1ziw_A 314 LA---SLPKID-----DF-------SFQW---------------------LKCLEHLNMEDNDIPGIKSNM----FTGLI 353 (680)
T ss_dssp ------CCEEC-----TT-------TTTT---------------------CTTCCEEECCSCCBCCCCTTT----TTTCT
T ss_pred cc---cccccC-----hh-------hccc---------------------CCCCCEEECCCCccCCCChhH----hcccc
Confidence 00 000000 00 0111 345666666666666554433 34478
Q ss_pred cccEEeccCcccccc-C-CccccC--CCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccc-ccccCCCCCC
Q 042359 602 SLNALQLNDNYLNGE-L-PDCWMS--YQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL-VSLKNCTALE 676 (979)
Q Consensus 602 ~L~~L~Ls~n~l~~~-~-p~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~ 676 (979)
+|++|++++|.+... + +..+.. .++|+.|++++|++++..|..|..+++|++|++++|++++.+| ..+.++++|+
T Consensus 354 ~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 433 (680)
T 1ziw_A 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433 (680)
T ss_dssp TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccccc
Confidence 888888888875432 1 223333 2589999999999999999999999999999999999998776 6899999999
Q ss_pred EEeccCCcccccCChhHHHhhhccceeeccCCccc--CCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccc
Q 042359 677 SLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFH--GPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSF 754 (979)
Q Consensus 677 ~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~ 754 (979)
+|++++|++.+..+..+. .+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..+..++.|
T Consensus 434 ~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L------ 506 (680)
T 1ziw_A 434 EIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL------ 506 (680)
T ss_dssp EEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred EEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc------
Confidence 999999999876666665 7999999999999987 5789999999999999999999997777777776666
Q ss_pred cccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccccccc--------ccccCCCCCCEEeCCCC
Q 042359 755 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP--------LEVTNLKALQSLNFSYN 826 (979)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip--------~~l~~l~~L~~L~Ls~N 826 (979)
+.|||++|++++..+ ..++++++|+.|+|++|
T Consensus 507 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 507 ----------------------------------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp ----------------------------------------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 899999999986422 23789999999999999
Q ss_pred cceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCc--cCCCccccccCCC-CCCC
Q 042359 827 SFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSST--QLQSFDVSSFAGN-DLCG 901 (979)
Q Consensus 827 ~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~~n-~lcg 901 (979)
+++...+..|+.+++|+.|||++|++++..|..+..+++|++|++++|++++..|..- .+..+....+++| -.|.
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 9994444579999999999999999998777778999999999999999998766431 4556666667777 3443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-51 Score=495.57 Aligned_cols=514 Identities=20% Similarity=0.200 Sum_probs=360.9
Q ss_pred CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeee
Q 042359 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN 360 (979)
Q Consensus 281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~ 360 (979)
++++|++++|.+++..|..|.++++|++|++++|.+.+ +.+..|+++++|++|++++| .+.+..|..++.+++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCC-cccccChhhhcccccccEee
Confidence 46666666666665556666666666666666666653 33556666666666666666 56655566666666666666
Q ss_pred ccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCC--EEEc
Q 042359 361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLR--VLRI 438 (979)
Q Consensus 361 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~L 438 (979)
+++|.+.+..+. .++.++. |++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|+ .|++
T Consensus 112 L~~n~i~~l~~~----~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 112 FIQTGISSIDFI----PLHNQKT-LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CTTSCCSCGGGS----CCTTCTT-CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccccCcccCCcc----hhccCCc-ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 666555543232 2222222 44444444444443222333366666666666666666666666666666 6666
Q ss_pred CCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCC
Q 042359 439 NDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD 518 (979)
Q Consensus 439 ~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~ 518 (979)
++|++.+..+. .+. ..+|+.+++++|. ..+..+..+..++...+....+.+
T Consensus 187 ~~n~l~~~~~~-~~~-~~~L~~L~l~~~~---------------------------~~~~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 187 NGNDIAGIEPG-AFD-SAVFQSLNFGGTQ---------------------------NLLVIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp TTCCCCEECTT-TTT-TCEEEEEECTTCS---------------------------CHHHHHHHTTTCEEEEEECCCCTT
T ss_pred CCCccCccChh-Hhh-hccccccccCCch---------------------------hHHHHhhhccccchhheechhhcc
Confidence 66666543332 222 2455555555543 122233333332222222111111
Q ss_pred ----CCchHHHhcCC--CccEEEcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCcc--CCCCcEEEcccccccccC
Q 042359 519 ----IFPIRFLKSAS--QLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLI--SSNLVFLDLSNNLFSGSI 589 (979)
Q Consensus 519 ----~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~Ls~n~l~~~~ 589 (979)
.++...+..+. +|+.|++++|.+++..+ .+..+++|+.|++++|.++...+.. +++|++|++++|.+.+..
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc
Confidence 01111111111 56667777777666555 3566667777777777666332222 468888888888888765
Q ss_pred ChhhhhcccCCCcccEEeccCccccccCCc-cccCCCCCCEEEccCCcccccC--CcccCCCCCccEEEcCCcccccccc
Q 042359 590 SPFLCYRINETKSLNALQLNDNYLNGELPD-CWMSYQNLKTLKLSNNKFTGNL--PYSMGSLTSLVWLHLGENRLSGNIL 666 (979)
Q Consensus 590 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p 666 (979)
|..+ ..+++|+.|++++|.+.+.+|. .+..+++|++|++++|++++.. |..+..+++|++|++++|++.+..|
T Consensus 318 ~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 318 QISA----SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp GGCG----GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred hhhh----hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 5443 4589999999999999877765 4889999999999999998765 7789999999999999999999889
Q ss_pred ccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCcccccc---Ccchh
Q 042359 667 VSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAI---PNCIN 743 (979)
Q Consensus 667 ~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~~~ 743 (979)
..+..+++|++|++++|++.+..|......+++|+.|++++|.+++..|..+..+++|+.|++++|++.+.. +..+.
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence 999999999999999999998777653447899999999999999989999999999999999999998632 23454
Q ss_pred hcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeC
Q 042359 744 NLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNF 823 (979)
Q Consensus 744 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L 823 (979)
.+++ |+.|+|++|++++.+|..++++++|+.|+|
T Consensus 474 ~l~~----------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 474 TLGR----------------------------------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp GCTT----------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCC----------------------------------------------ccEEECCCCccCccChhhhccccCCCEEEC
Confidence 4444 489999999999999999999999999999
Q ss_pred CCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359 824 SYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 824 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 881 (979)
++|++++.+|..++++++| .|||++|++++.+|..+..+++|++|++++|+++|..+
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999 99999999999999999999999999999999998766
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-51 Score=505.34 Aligned_cols=247 Identities=21% Similarity=0.237 Sum_probs=161.2
Q ss_pred CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV 680 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 680 (979)
++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+++.|++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~l 408 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHL 408 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeec
Confidence 334444444444443334444555555555555555542 21 2455566666666655 23322 345666666
Q ss_pred cCCcccccCChhHHHhhhccceeeccCCcccCCCCc-cccCCCCccEEEccCCcccccc-----CcchhhcccCcccccc
Q 042359 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT-GLCDLAFLQILDIADNNLSGAI-----PNCINNLTGMVTACSF 754 (979)
Q Consensus 681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~l~~~~~~ 754 (979)
++|++.+.-.......+++|+.|++++|++++..+. .+..+++|+.|++++|.+++.. |..+..+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l--------- 479 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL--------- 479 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB---------
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc---------
Confidence 666665422222222567777777777777654333 3455788888888888886332 2223333
Q ss_pred cccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCC
Q 042359 755 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPE 834 (979)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 834 (979)
+.|+.|||++|++++.+|..+.++++|+.|+|++|++++..|.
T Consensus 480 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 522 (844)
T 3j0a_A 480 -------------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522 (844)
T ss_dssp -------------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC
T ss_pred -------------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChh
Confidence 4458999999999999999999999999999999999987777
Q ss_pred CCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCC-CCCCCCCCCCCCCC
Q 042359 835 SIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPKNCTEN 911 (979)
Q Consensus 835 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lcg~~~~~~c~~~ 911 (979)
.+. ++|+.|||++|++++.+|+.+. +|+.+++++|++.+..+.. .|.......| .+||.+....|..+
T Consensus 523 ~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 523 DLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp CCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred hhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCc
Confidence 776 8999999999999999998764 7889999999999877632 2211112233 66776666677543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-50 Score=487.35 Aligned_cols=515 Identities=19% Similarity=0.165 Sum_probs=325.2
Q ss_pred CccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccC
Q 042359 224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF 303 (979)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 303 (979)
.+++|++++|.++++.+..+.++++|++|++++|.++ +..|..|+++++|++|++++|.+++..|..++++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccc---------eeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 4566666666666665556666666666666666655 3345555666666666666666655555556666
Q ss_pred CCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccC
Q 042359 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSN 383 (979)
Q Consensus 304 ~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 383 (979)
++|++|++++|.+++ +++..++++++|++|++++| .+.+.....+..+++|++|++++|.+.+
T Consensus 105 ~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------- 167 (606)
T 3t6q_A 105 KALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHY--------------- 167 (606)
T ss_dssp TTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCE---------------
T ss_pred ccccEeeccccCccc-CCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccc---------------
Confidence 666666666666553 22445555555666666555 4444222222224444444444444443
Q ss_pred CCcEEECcCCcCccccccccCCCCCCc--EEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEE
Q 042359 384 GLESLDLRSDSIYGHLTDQLGQFKNIV--TLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF 461 (979)
Q Consensus 384 ~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 461 (979)
..+..++.+++|+ +|++++|.+.+..|..+.. .+|++|++++|... + ..+..+..+...
T Consensus 168 --------------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~-~~~~~l~~~~l~ 228 (606)
T 3t6q_A 168 --------------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---L-VIFKGLKNSTIQ 228 (606)
T ss_dssp --------------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---H-HHHHHTTTCEEE
T ss_pred --------------cChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhH---H-HHhhhccccchh
Confidence 3333344444444 4444444444444433322 34445555444311 1 122233332222
Q ss_pred EccCCccccc-----ccCCCCCc--ccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEE
Q 042359 462 RVDGNKLTLG-----VKHDWIPP--FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFL 534 (979)
Q Consensus 462 ~L~~n~l~~~-----~~~~~~~~--~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 534 (979)
.+....+... ....+... .+++.+++++|.+.+..+..+..+++|++|++++|.+... |..+ ..+++|++|
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~l-~~l~~L~~L 306 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGL-VGLSTLKKL 306 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC-CSSC-CSCTTCCEE
T ss_pred heechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC-Chhh-cccccCCEE
Confidence 2221111110 01111111 1566666666666666666677777777777777777643 3332 456777777
Q ss_pred EcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccc
Q 042359 535 DLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYL 613 (979)
Q Consensus 535 ~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 613 (979)
++++|.+.+..| .+..+++|+.|++++ |.+.+.++.. .+..+++|++|++++|.+
T Consensus 307 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------n~~~~~~~~~---~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 307 VLSANKFENLCQISASNFPSLTHLSIKG---------------------NTKRLELGTG---CLENLENLRELDLSHDDI 362 (606)
T ss_dssp ECTTCCCSBGGGGCGGGCTTCSEEECCS---------------------CSSCCBCCSS---TTTTCTTCCEEECCSSCC
T ss_pred ECccCCcCcCchhhhhccCcCCEEECCC---------------------CCcccccchh---hhhccCcCCEEECCCCcc
Confidence 777777776555 444444444444444 4333333321 123466777777777777
Q ss_pred cccC--CccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccc-ccCCCCCCEEeccCCcccccCC
Q 042359 614 NGEL--PDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS-LKNCTALESLDVGENEFVGNIP 690 (979)
Q Consensus 614 ~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~ip 690 (979)
.+.. |..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|.. +.++++|++|++++|.+.+..|
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 6554 666777778888888888887777777777888888888888877665543 7778888888888888877666
Q ss_pred hhHHHhhhccceeeccCCcccCC---CCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcc
Q 042359 691 TWIGERFSRMVVLILRSNKFHGP---LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPID 767 (979)
Q Consensus 691 ~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 767 (979)
..+. .+++|+.|++++|++++. .+..+..+++|+.|++++|++++..|..+.+++.|
T Consensus 443 ~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------- 502 (606)
T 3t6q_A 443 QLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM------------------- 502 (606)
T ss_dssp TTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------
T ss_pred HHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC-------------------
Confidence 6665 678888888888888762 33568889999999999999998888888777766
Q ss_pred cceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEEC
Q 042359 768 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847 (979)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdL 847 (979)
+.|||++|++++.+|..+.+++.| .|+|++|++++.+|..++.+++|+.||+
T Consensus 503 ---------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 503 ---------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp ---------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred ---------------------------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 889999999999999999999999 9999999999988988999999999999
Q ss_pred cCCcccccCC
Q 042359 848 SANQLSGEIP 857 (979)
Q Consensus 848 s~N~l~~~ip 857 (979)
++|++++..+
T Consensus 555 ~~N~~~c~c~ 564 (606)
T 3t6q_A 555 RQNPLDCTCS 564 (606)
T ss_dssp TTCCEECSGG
T ss_pred CCCCccccCC
Confidence 9999998655
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.7e-51 Score=490.15 Aligned_cols=540 Identities=19% Similarity=0.176 Sum_probs=384.4
Q ss_pred CCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC
Q 042359 199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN 278 (979)
Q Consensus 199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~ 278 (979)
.++++++++.++.++.. -.+++++|++++|+++++.+..+.++++|++|++++|.++ +..|..+.+
T Consensus 13 ~~~~~c~~~~l~~ip~~-----~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~i~~~~~~~ 78 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDD-----IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---------TIEDKAWHG 78 (606)
T ss_dssp TTEEECTTSCCSSCCTT-----SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTT
T ss_pred CCceEccCCCcccCCCC-----CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc---------ccCHHHhhc
Confidence 45788888888876542 1278888999999888888888888888889998888887 445677888
Q ss_pred CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcc-cCcccccCCCCCC
Q 042359 279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG-RIPRSMASLCNLK 357 (979)
Q Consensus 279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~-~~~~~l~~l~~L~ 357 (979)
+++|++|++++|.+++..|..|+++++|++|++++|.+.+ +++..++++++|++|++++| .+.+ .+|..++++++|+
T Consensus 79 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCC
T ss_pred hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCC
Confidence 8888888888888888778888888888888888888874 43567888888888888888 6665 5688888888888
Q ss_pred eeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCC----CcEEeccCCcCcccCcccccCCCCC
Q 042359 358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKN----IVTLDFANNSIVGLIPESLGQLSTL 433 (979)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~----L~~L~Ls~n~l~~~~p~~l~~l~~L 433 (979)
+|++++|.+.+..+. .++.+++ +++|++++|.+++..+..+... +|
T Consensus 157 ~L~Ls~n~l~~~~~~-----------------------------~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L 206 (606)
T 3vq2_A 157 HVDLSYNYIQTITVN-----------------------------DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL 206 (606)
T ss_dssp EEECCSSCCCEECTT-----------------------------TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred EEEccCCcceecChh-----------------------------hhhhhhccccccceeeccCCCcceeCcccccCc-ee
Confidence 888887777665444 2222222 3356666666555444444333 56
Q ss_pred CEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEc-c
Q 042359 434 RVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL-V 512 (979)
Q Consensus 434 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L-s 512 (979)
++|++++|.+.+......+.+++.|+.+++..+.+......... ....+..+..+ +++.+++ .
T Consensus 207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~---------------~~~~~~~l~~l-~l~~l~l~~ 270 (606)
T 3vq2_A 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF---------------EPSIMEGLCDV-TIDEFRLTY 270 (606)
T ss_dssp EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC---------------CGGGGTTGGGS-EEEEEEECC
T ss_pred eeeeccCCccchhHHHHHhccccccccccccccccccCCccccc---------------ChHHhhhhhhc-cHhheeccc
Confidence 66666666665444444566666666655544332211000000 00000111111 2334444 3
Q ss_pred CCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChh
Q 042359 513 NSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPF 592 (979)
Q Consensus 513 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 592 (979)
.+.+.+..|. +..+++|+.|++++|.+.. +|.+..+ ++|++|++++|.+ +.+|..
T Consensus 271 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~---------------------~~L~~L~l~~n~l-~~lp~~ 325 (606)
T 3vq2_A 271 TNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKH---------------------FKWQSLSIIRCQL-KQFPTL 325 (606)
T ss_dssp CTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTT---------------------CCCSEEEEESCCC-SSCCCC
T ss_pred cccccccccc--cccCCCCCEEEecCccchh-hhhcccc---------------------ccCCEEEcccccC-cccccC
Confidence 3444444333 3344455555555554432 2223233 3555556666655 444421
Q ss_pred hhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCccccc--CCcccCCCCCccEEEcCCcccccccccccc
Q 042359 593 LCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN--LPYSMGSLTSLVWLHLGENRLSGNILVSLK 670 (979)
Q Consensus 593 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 670 (979)
.+++|+.|++++|...+.+ .+..+++|++|++++|++++. +|..+..+++|++|++++|.+++ +|..+.
T Consensus 326 ------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~ 396 (606)
T 3vq2_A 326 ------DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396 (606)
T ss_dssp ------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred ------CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence 3677777777777555443 456778888888888888765 37777888888888888888875 567788
Q ss_pred CCCCCCEEeccCCcccccCC-hhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccc-cCcchhhcccC
Q 042359 671 NCTALESLDVGENEFVGNIP-TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGA-IPNCINNLTGM 748 (979)
Q Consensus 671 ~l~~L~~L~L~~N~l~~~ip-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~l 748 (979)
++++|++|++++|++.+..| ..+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++. +|..++.+++|
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTT-TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCeeECCCCccCCccChhhhh-ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 88888888888888887766 3444 788899999999998888888899999999999999999874 67777776666
Q ss_pred cccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcc
Q 042359 749 VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSF 828 (979)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 828 (979)
+.|||++|++++.+|..++++++|+.|+|++|++
T Consensus 476 ----------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 476 ----------------------------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ----------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------------------------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 8899999999999999999999999999999999
Q ss_pred eeccCCCCCccCCCCEEECcCCcccccCCCCCCCCC-CCCEEEccCCcccccCCC
Q 042359 829 TGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT-FLNHLNLSNNNLTGKIPS 882 (979)
Q Consensus 829 ~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~ 882 (979)
++.+|..++.+++|+.|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999 6788899987 699999999999987764
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-52 Score=501.13 Aligned_cols=525 Identities=18% Similarity=0.209 Sum_probs=289.3
Q ss_pred CCHHHHHHHHHhhhcCCCCCC--------CCCCCCCCCCCccc---cceeccCCCCcEEEEECCCCCCCCchhhHHHhhc
Q 042359 40 CLGSEKEALLSFKRDLKDPSN--------RLASWSGNGDCCAW---AGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRR 108 (979)
Q Consensus 40 c~~~~~~~ll~~k~~~~~~~~--------~l~~W~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~ 108 (979)
....|++||.++|+++.++.. ..++|+.+.+||.| +||+|+. .|||++|+|++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~--------------- 90 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG--------------- 90 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTT---------------
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecC---------------
Confidence 446799999999999864422 34589988999999 9999975 49999999999
Q ss_pred ccccccccccccCCCCCCEEeCCCCCCCCC-----------CccccccCCCCCCEEEcCCCCCCCCCccccCCC-CCCce
Q 042359 109 TALVGKINPSLLDLKHLSYLDLSFNDFQGI-----------QIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNL-SNLQF 176 (979)
Q Consensus 109 ~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-----------~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L-~~L~~ 176 (979)
+++.|.+|++++++++|++|+|++|.+... .+|... +.+|+ ++++++.+.+.+|..+..+ .++..
T Consensus 91 ~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~ 167 (636)
T 4eco_A 91 FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCIN 167 (636)
T ss_dssp SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhh
Confidence 489999999999999999999999976211 122222 34455 5555555555555444321 12222
Q ss_pred EecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEEC--
Q 042359 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDL-- 254 (979)
Q Consensus 177 L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-- 254 (979)
+++....+... ....++.+.+
T Consensus 168 ~~l~~~~~~~~---------------------------------------------------------~~~~l~~l~l~~ 190 (636)
T 4eco_A 168 SDPQQKSIKKS---------------------------------------------------------SRITLKDTQIGQ 190 (636)
T ss_dssp HCTTSCCCCCC---------------------------------------------------------CCCCCCTTTTTC
T ss_pred cCccccccccc---------------------------------------------------------cccchhhhhhcc
Confidence 22211110000 0000000001
Q ss_pred CCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCccc-CchhhccCCCCCEEeccCCcCccccCccccc--ccCcc
Q 042359 255 SDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSS-IPNWLYRFIHLEYLSLSNNSLQGTIDSEALG--NLTSI 331 (979)
Q Consensus 255 s~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L 331 (979)
..|+++ + +|..++++++|++|++++|.+++. ++... .+ -+.+...+.+ |..++ ++++|
T Consensus 191 ~~n~l~---------~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~~------~~~~~~~~~i-p~~l~~~~l~~L 251 (636)
T 4eco_A 191 LSNNIT---------F-VSKAVMRLTKLRQFYMGNSPFVAENICEAW--EN------ENSEYAQQYK-TEDLKWDNLKDL 251 (636)
T ss_dssp CSCEEE---------E-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC--SC------TTSHHHHHHT-TSCCCGGGCTTC
T ss_pred ccCCCc---------c-CCHHHhcccCCCEEECcCCccccccccccc--cc------cccchhcccC-chhhhhcccCCC
Confidence 123333 3 444444444555555554444442 00000 00 0000000013 44444 55555
Q ss_pred CEEecCCCCCCcccCcccccCCCCCCeeeccCcc-CCc-ccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCC
Q 042359 332 SWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH-LSQ-EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI 409 (979)
Q Consensus 332 ~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 409 (979)
++|++++| .+.+.+|..++++++|++|++++|+ +++ .+|. .++.+. .+..+++|
T Consensus 252 ~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~----~~~~L~-------------------~~~~l~~L 307 (636)
T 4eco_A 252 TDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKD----DWQALA-------------------DAPVGEKI 307 (636)
T ss_dssp CEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH----HHHHHH-------------------HSGGGGTC
T ss_pred CEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchH----HHHhhh-------------------ccccCCCC
Confidence 55555555 4555555555555555555555554 444 3443 111110 11223566
Q ss_pred cEEeccCCcCcccCcc--cccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEec
Q 042359 410 VTLDFANNSIVGLIPE--SLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGL 487 (979)
Q Consensus 410 ~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 487 (979)
++|++++|+++ .+|. .++.+++|++|++++|++.|.+| .+..+++|+.|++++|.+
T Consensus 308 ~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l------------------- 365 (636)
T 4eco_A 308 QIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQI------------------- 365 (636)
T ss_dssp CEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEE-------------------
T ss_pred CEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCcc-------------------
Confidence 66666666666 5555 56666666666666666665554 233332222222222221
Q ss_pred ccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCC
Q 042359 488 RNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGP 567 (979)
Q Consensus 488 ~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~ 567 (979)
+ .+|
T Consensus 366 ------------------------------------------------------~-~lp--------------------- 369 (636)
T 4eco_A 366 ------------------------------------------------------T-EIP--------------------- 369 (636)
T ss_dssp ------------------------------------------------------E-ECC---------------------
T ss_pred ------------------------------------------------------c-ccc---------------------
Confidence 1 000
Q ss_pred CCccCCCCcEEEcccccccccCChhhhhcccCCCc-ccEEeccCccccccCCccccCCC--CCCEEEccCCcccccCCcc
Q 042359 568 LPLISSNLVFLDLSNNLFSGSISPFLCYRINETKS-LNALQLNDNYLNGELPDCWMSYQ--NLKTLKLSNNKFTGNLPYS 644 (979)
Q Consensus 568 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~ 644 (979)
.. +..+++ |+.|++++|.++ .+|..+...+ +|++|++++|++++.+|..
T Consensus 370 -----------------------~~----l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 370 -----------------------AN----FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp -----------------------TT----SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred -----------------------Hh----hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 00 011233 444444444444 3444444332 6677777777777666666
Q ss_pred cC-------CCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCcc
Q 042359 645 MG-------SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTG 717 (979)
Q Consensus 645 l~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~ 717 (979)
+. .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|...+.... ..
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------------~~ 483 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------------EN 483 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------------EE
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------------cc
Confidence 65 4555555555555555322223334555555555555555 44443321110 00
Q ss_pred ccCCCCccEEEccCCccccccCcchh--hcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhcccee
Q 042359 718 LCDLAFLQILDIADNNLSGAIPNCIN--NLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVR 795 (979)
Q Consensus 718 l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 795 (979)
+.++++|+.|++++|+++ .+|..+. .++.| +
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L----------------------------------------------~ 516 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL----------------------------------------------V 516 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC----------------------------------------------C
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCc----------------------------------------------C
Confidence 112236777777777766 5665554 44443 6
Q ss_pred EEecccCcccccccccccCCCCCCEEeC------CCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEE
Q 042359 796 MIDISRNNFSGKIPLEVTNLKALQSLNF------SYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHL 869 (979)
Q Consensus 796 ~LdLs~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 869 (979)
.|||++|++++ +|..++++++|+.|+| ++|++.+.+|..++++++|+.|||++|++ +.+|..+. ++|++|
T Consensus 517 ~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L 592 (636)
T 4eco_A 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVL 592 (636)
T ss_dssp EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEE
T ss_pred EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEE
Confidence 67777777775 6777777777777777 66888889999999999999999999999 68888766 789999
Q ss_pred EccCCcccc
Q 042359 870 NLSNNNLTG 878 (979)
Q Consensus 870 ~ls~N~l~g 878 (979)
|+++|++..
T Consensus 593 ~Ls~N~l~~ 601 (636)
T 4eco_A 593 DIKDNPNIS 601 (636)
T ss_dssp ECCSCTTCE
T ss_pred ECcCCCCcc
Confidence 999998774
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-50 Score=482.88 Aligned_cols=538 Identities=18% Similarity=0.138 Sum_probs=400.3
Q ss_pred CceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEE
Q 042359 174 LQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLD 253 (979)
Q Consensus 174 L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 253 (979)
-++++.+++.+..++.. -.+++++|++++|.+++... ..+.++++|++|++++|+++++.+..|.++++|++|+
T Consensus 13 ~~~~~c~~~~l~~ip~~----~~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDD----IPSSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCSSCCTT----SCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCceEccCCCcccCCCC----CCCCcCEEECCCCCcCEeCh--hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeE
Confidence 46799999999888863 23899999999999987643 4678999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCcc-ccCcccccccCccC
Q 042359 254 LSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQG-TIDSEALGNLTSIS 332 (979)
Q Consensus 254 Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~ 332 (979)
+++|.++ +..|..++++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+ |..++++++|+
T Consensus 87 Ls~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l-p~~~~~l~~L~ 156 (606)
T 3vq2_A 87 LTGNPIQ---------SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL-PAYFSNLTNLV 156 (606)
T ss_dssp CTTCCCC---------CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC-CGGGGTCTTCC
T ss_pred CCCCccc---------ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec-hHhHhhcCCCC
Confidence 9999998 5568899999999999999999998887889999999999999999985 45 88999999999
Q ss_pred EEecCCCCCCcccCcccccCCCCCC----eeeccCccCCcccchhhhhccccccCCCcEEECcCCcCc-cccccccCCCC
Q 042359 333 WLDLSLNMGIEGRIPRSMASLCNLK----SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIY-GHLTDQLGQFK 407 (979)
Q Consensus 333 ~L~L~~n~~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~ 407 (979)
+|++++| .+.+..+..+..+++|+ +|++++|.+.+..+. .+.. . +|+.|++++|.+. +..|..+++++
T Consensus 157 ~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~----~~~~-~-~L~~L~L~~n~~~~~~~~~~~~~l~ 229 (606)
T 3vq2_A 157 HVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ----AFQG-I-KLHELTLRGNFNSSNIMKTCLQNLA 229 (606)
T ss_dssp EEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTT----TTTT-C-EEEEEEEESCCSCHHHHHHHHHTTT
T ss_pred EEEccCC-cceecChhhhhhhhccccccceeeccCCCcceeCcc----cccC-c-eeeeeeccCCccchhHHHHHhcccc
Confidence 9999999 89888887777666554 567776666544333 1111 1 2555555555443 23344444444
Q ss_pred CCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEec
Q 042359 408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGL 487 (979)
Q Consensus 408 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 487 (979)
.|+.+++..+.+.+.. .+ . .++...+..+..+ +++.+.+
T Consensus 230 ~L~~l~l~~~~~~~~~--------~l----------~-~~~~~~~~~l~~l----------------------~l~~l~l 268 (606)
T 3vq2_A 230 GLHVHRLILGEFKDER--------NL----------E-IFEPSIMEGLCDV----------------------TIDEFRL 268 (606)
T ss_dssp TCEEEEEEEECCTTSC--------CC----------S-CCCGGGGTTGGGS----------------------EEEEEEE
T ss_pred ccccccccccccccCC--------cc----------c-ccChHHhhhhhhc----------------------cHhheec
Confidence 4444444332222110 00 0 0111112221111 2333444
Q ss_pred -ccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCC
Q 042359 488 -RNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSG 566 (979)
Q Consensus 488 -~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~ 566 (979)
..+.+.+..|. +..+++|+.|++++|.+.... .+..+++|++|++++|.+ +.+|.+ .+++|+.|++++|...+
T Consensus 269 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp CCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCE
T ss_pred cccccccccccc-cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCcc
Confidence 33334444444 566677777777777775543 234567788888888877 556655 55555555554443222
Q ss_pred CCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCcccccc--CCccccCCCCCCEEEccCCcccccCCcc
Q 042359 567 PLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE--LPDCWMSYQNLKTLKLSNNKFTGNLPYS 644 (979)
Q Consensus 567 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 644 (979)
.+ .+..+++|+.|++++|.+++. +|..+..+++|++|++++|.+++ +|..
T Consensus 343 ---------------------~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~ 394 (606)
T 3vq2_A 343 ---------------------SF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394 (606)
T ss_dssp ---------------------EC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred ---------------------ch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence 11 123466777777777777655 36777788888888888888874 6677
Q ss_pred cCCCCCccEEEcCCcccccccc-ccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccC-CCCccccCCC
Q 042359 645 MGSLTSLVWLHLGENRLSGNIL-VSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG-PLPTGLCDLA 722 (979)
Q Consensus 645 l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~ 722 (979)
+..+++|++|++++|++.+..| ..+.++++|++|++++|.+.+..|..+. .+++|+.|++++|++++ .+|..+..++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 8888888888888888887777 6788888888888888888877777776 68888999999998887 4788899999
Q ss_pred CccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccC
Q 042359 723 FLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 802 (979)
Q Consensus 723 ~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N 802 (979)
+|+.|++++|++++..|..+.+++.| +.|+|++|
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~Ls~N 507 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRL----------------------------------------------QLLNMSHN 507 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------------CEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhcccccC----------------------------------------------CEEECCCC
Confidence 99999999999998888888877766 88999999
Q ss_pred cccccccccccCCCCCCEEeCCCCcceeccCCCCCccC-CCCEEECcCCcccccCC
Q 042359 803 NFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR-SLESIDFSANQLSGEIP 857 (979)
Q Consensus 803 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~-~L~~LdLs~N~l~~~ip 857 (979)
++++.+|..++++++|+.|+|++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999999999999999 7888899987 69999999999997655
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-48 Score=475.00 Aligned_cols=516 Identities=15% Similarity=0.170 Sum_probs=285.4
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCC-----CCC--ccc------------cceeccCCCCcEEEEECCCCCCC
Q 042359 37 HVGCLGSEKEALLSFKRDLKDPSNRLASWSGN-----GDC--CAW------------AGVFCDNITGHVLHLDLRNPFNY 97 (979)
Q Consensus 37 ~~~c~~~~~~~ll~~k~~~~~~~~~l~~W~~~-----~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~ 97 (979)
..++..+|++||++||+++.+| +|+.+ .+| |.| .||+|+. .+||+.|+|++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---- 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---- 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence 3456688999999999999876 78633 355 999 9999975 79999999999
Q ss_pred CchhhHHHhhcccccccccccccCCCCCCEEeC-CCCCCCCCCccccccCC-CCCCE--------------EEc-CCCCC
Q 042359 98 HKESEYEAIRRTALVGKINPSLLDLKHLSYLDL-SFNDFQGIQIPRFFGSM-GNLRY--------------LNL-SRTRI 160 (979)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L-s~n~i~~~~lp~~~~~l-~~L~~--------------L~L-s~n~i 160 (979)
+++.|.+|+++++|++|++|+| ++|.+++. .|-..... ..+.. ++. ....+
T Consensus 333 -----------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 333 -----------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp -----------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred -----------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 5899999999999999999999 88876553 12110000 00000 000 00000
Q ss_pred C-----------CCCccccCCCCCCceEecCC--CccccCCccccccCCCCCCEEEccCccCCCC---------------
Q 042359 161 G-----------GMIPHHLGNLSNLQFLDLSS--NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKA--------------- 212 (979)
Q Consensus 161 ~-----------~~~p~~~~~L~~L~~L~Ls~--n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~--------------- 212 (979)
. ...+........++.+.+.. |.+..++. .+.++++|++|++++|.+++.
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~--~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK--AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG--GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhH--HHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 0 00000011112222222222 33333322 244455555555555544440
Q ss_pred chhhhhcC--CCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCC-CCCCCCCCcccc-cCCccccCC-------CC
Q 042359 213 FDWLMVTN--KLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQ-FDKWFIPSWVFG-PIPRGLQNL-------TS 281 (979)
Q Consensus 213 ~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~-~~p~~l~~l-------~~ 281 (979)
..++..+. ++++|++|++++|.+.+..+..+.++++|+.|++++|+ ++ + .+|..++++ ++
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---------g~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---------AAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---------HHHHHHHHHHHHHCTTTTTT
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---------cccchHHHHhhhhcccccCC
Confidence 01233333 56666666666666666666666666666666666665 54 4 455444333 36
Q ss_pred CCEEeccCCcCcccCch--hhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCC-CCe
Q 042359 282 LRHLGLDSNHFNSSIPN--WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN-LKS 358 (979)
Q Consensus 282 L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~-L~~ 358 (979)
|++|++++|.++ .+|. .+.++++|++|++++|.++ .+ | .++.+++|++|++++| .+. .+|..+..+++ |+.
T Consensus 550 L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l-p-~~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL-E-AFGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEG 623 (876)
T ss_dssp CCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC-C-CCCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCE
T ss_pred ccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc-h-hhcCCCcceEEECcCC-ccc-cchHHHhhccccCCE
Confidence 666666666666 5555 5666666666666666665 45 3 5666666666666666 555 55555555555 555
Q ss_pred eeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCC--CCcEEeccCCcCcccCccc---cc--CCC
Q 042359 359 LNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFK--NIVTLDFANNSIVGLIPES---LG--QLS 431 (979)
Q Consensus 359 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~p~~---l~--~l~ 431 (979)
|++++|.+. . +|..+..++ +|+.|++++|.+.+.+|.. +. .++
T Consensus 624 L~Ls~N~L~-~-----------------------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 624 LGFSHNKLK-Y-----------------------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EECCSSCCC-S-----------------------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred EECcCCCCC-c-----------------------------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 555555544 3 333333332 2566666666655544421 11 234
Q ss_pred CCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEc
Q 042359 432 TLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL 511 (979)
Q Consensus 432 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L 511 (979)
+|++|++++|++. .+|...+..+++|+.|++++|.+.......+... +..+.++++|+.|++
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~-----------------~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPK-----------------DGNYKNTYLLTTIDL 735 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT-----------------TSCCTTGGGCCEEEC
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccc-----------------cccccccCCccEEEC
Confidence 6666666666665 5565555566666666666666552222111110 001122335666666
Q ss_pred cCCCCCCCCchHHH-hcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCC
Q 042359 512 VNSSISDIFPIRFL-KSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS 590 (979)
Q Consensus 512 s~n~l~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~ 590 (979)
++|++.. +|..+. ..+++|+.|++++|.+++.++.+..+++|+.|++++|+
T Consensus 736 s~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~--------------------------- 787 (876)
T 4ecn_A 736 RFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR--------------------------- 787 (876)
T ss_dssp CSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB---------------------------
T ss_pred CCCCCcc-chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC---------------------------
Confidence 6666653 333332 34556666666666666522234444333333333332
Q ss_pred hhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccccc
Q 042359 591 PFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLK 670 (979)
Q Consensus 591 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 670 (979)
++++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.|+|++|++....+..+.
T Consensus 788 ----------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 788 ----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp ----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred ----------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 2334566666666677777777777777777 46666654 4777777777777655555554
Q ss_pred CCCCCCEEeccCCccc
Q 042359 671 NCTALESLDVGENEFV 686 (979)
Q Consensus 671 ~l~~L~~L~L~~N~l~ 686 (979)
....+..+.+.+|+..
T Consensus 849 ~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 849 PYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp HHHHTTCCEEECCTTS
T ss_pred ccccchheeecCCCcc
Confidence 4444455555555543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.6e-47 Score=468.57 Aligned_cols=525 Identities=21% Similarity=0.210 Sum_probs=333.2
Q ss_pred ccccceeccCCCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCCCc-cccccCCCCC
Q 042359 72 CAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQI-PRFFGSMGNL 150 (979)
Q Consensus 72 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~l-p~~~~~l~~L 150 (979)
|.|.+|.+ ...++++|||++ +.+.+..+.+|.++++|++|+|++|.+... + |..|+++++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~---------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L 75 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF---------------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNL 75 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES---------------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTC
T ss_pred CCCCCCCC--CCCCcCEEECCC---------------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCC
Confidence 45666665 456777777777 366666677778888888888887755432 4 6677788888
Q ss_pred CEEEcCCCCCCCCCccccCCCCCCceEecCCCcccc-CCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEE
Q 042359 151 RYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY-VDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELR 229 (979)
Q Consensus 151 ~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 229 (979)
++|+|++|.+.+..|..|+++++|++|+|++|.+.. .+...++.++++|++|++++|.+.+.. ....+.++++|++|+
T Consensus 76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSID 154 (844)
T ss_dssp CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEE
T ss_pred CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEE
Confidence 888888888877777778888888888888887765 233334667777777777777776542 123456777777777
Q ss_pred ccCCCCCCCChhhhcCC--CCCCEEECCCCCCCCCCCCCcccccCCccccCCCC------CCEEeccCCcCcccCchhhc
Q 042359 230 LANCQLHHFSLLATANF--SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS------LRHLGLDSNHFNSSIPNWLY 301 (979)
Q Consensus 230 L~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~ 301 (979)
+++|.+++..+..+..+ ++|+.|++++|.+. +..|..++.+++ |++|++++|.+++..+..+.
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~---------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY---------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC---------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred CCCCcCCeeCHHHcccccCCccceEECCCCccc---------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 77777777766666655 67777777777766 344444444443 77777777776666665554
Q ss_pred cC---CCCCEEeccCCcCccc--------cCccccccc--CccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCc
Q 042359 302 RF---IHLEYLSLSNNSLQGT--------IDSEALGNL--TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQ 368 (979)
Q Consensus 302 ~l---~~L~~L~L~~n~l~~~--------i~~~~l~~l--~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 368 (979)
.. .+++.+.++.+..... .....+..+ ++|+.|++++| .+.+..+..+..+++
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~------------- 291 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKD------------- 291 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCC-------------
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCC-------------
Confidence 32 4566666653322110 112222222 34444555444 444444444444444
Q ss_pred ccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccC
Q 042359 369 EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLS 448 (979)
Q Consensus 369 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~ 448 (979)
|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++. .++
T Consensus 292 ----------------L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~ 354 (844)
T 3j0a_A 292 ----------------LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQ 354 (844)
T ss_dssp ----------------CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCC
T ss_pred ----------------CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccC
Confidence 555555555555545555555555666666666555555555555556666666665554 333
Q ss_pred hhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcC
Q 042359 449 AIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSA 528 (979)
Q Consensus 449 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 528 (979)
...|.++++|+.|++++|.++... ..++|+.+++++|.+. .+|.. ..+++.|++++|.+.+.....+...+
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred hhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcC
Confidence 334555555666666555554321 1334455555555444 22322 34677777777777776555555567
Q ss_pred CCccEEEcccCcCCCCCCC--cccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhh-hhcccCCCcccE
Q 042359 529 SQLKFLDLGQNQIHGPIPN--LTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFL-CYRINETKSLNA 605 (979)
Q Consensus 529 ~~L~~L~Ls~n~l~~~~~~--l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~l~~~~~L~~ 605 (979)
++|++|++++|++++..+. ... .++|+.|++++|.+++..+... ...+..+++|+.
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~---------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSE---------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCS---------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred CccceeeCCCCccccccccccccc---------------------CCccccccCCCCccccccccccchhhhcCcccccE
Confidence 7777777777777654332 222 3455666666666553322111 123556889999
Q ss_pred EeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcc
Q 042359 606 LQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685 (979)
Q Consensus 606 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l 685 (979)
|+|++|++++..|..+..+++|++|++++|++++..|..+. ++|+.|++++|++++..|..+ .+|+.|++++|++
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKF 559 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCc
Confidence 99999999988888899999999999999999976666655 899999999999999888765 4789999999999
Q ss_pred cccCC
Q 042359 686 VGNIP 690 (979)
Q Consensus 686 ~~~ip 690 (979)
.+..+
T Consensus 560 ~C~c~ 564 (844)
T 3j0a_A 560 ICECE 564 (844)
T ss_dssp CCSSS
T ss_pred ccccc
Confidence 87655
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-46 Score=445.38 Aligned_cols=509 Identities=23% Similarity=0.240 Sum_probs=332.0
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCcccccc
Q 042359 115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLS 194 (979)
Q Consensus 115 ~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~ 194 (979)
+|..+. +++++|+|++|.++++ .+..|..+++|++|+|++|++++..|..|+++++|++|++++|.+..++.
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~----- 93 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL----- 93 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----
T ss_pred cCCCcc--ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-----
Confidence 444442 4788999999988875 46678889999999999998887777788888888888888887765542
Q ss_pred CCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCc
Q 042359 195 GLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPR 274 (979)
Q Consensus 195 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~ 274 (979)
..+..+++|++|++++|++++++...++.+++|++|++++|.++. ..+|.
T Consensus 94 ----------------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--------~~lp~ 143 (570)
T 2z63_A 94 ----------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--------FKLPE 143 (570)
T ss_dssp ----------------------TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC--------CCCCG
T ss_pred ----------------------hhhcCccccccccccccccccCCCccccccccccEEecCCCccce--------ecChh
Confidence 234556666666777777766666667888888888888888773 24677
Q ss_pred cccCCCCCCEEeccCCcCcccCchhhccCCCC----CEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccc
Q 042359 275 GLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL----EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM 350 (979)
Q Consensus 275 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l 350 (979)
.++++++|++|++++|.+++..+..++.+++| ++|++++|.+.+ +.+..+..+ +|++|++++|..-...++..+
T Consensus 144 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~ 221 (570)
T 2z63_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCI 221 (570)
T ss_dssp GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHH
T ss_pred hhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhh
Confidence 88888888888888888887777778877777 788888888874 336666655 788888888733333456667
Q ss_pred cCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCC-cCcccCcccccC
Q 042359 351 ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANN-SIVGLIPESLGQ 429 (979)
Q Consensus 351 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~ 429 (979)
..+++++.+.+....+.... .++. +....+ ..+..+ .++.++++++ .+.+..|..+..
T Consensus 222 ~~l~~l~~~~l~~~~~~~~~-------------~l~~--~~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 222 QGLAGLEVHRLVLGEFRNEG-------------NLEK--FDKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp HTTTTCEEEEEEEEECCCCS-------------SCEE--CCTTTT-----GGGGGS-EEEEEEEEETTEEESCSTTTTGG
T ss_pred cCccccceeeeccccccCch-------------hhhh--cchhhh-----cccccc-chhhhhhhcchhhhhhchhhhcC
Confidence 77777776665543322110 0111 111111 111111 3566777777 667777777888
Q ss_pred CCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEE
Q 042359 430 LSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFL 509 (979)
Q Consensus 430 l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L 509 (979)
+++|++|++++|.+. .++. .+.. + +|++|
T Consensus 281 l~~L~~L~l~~~~l~-~l~~-~~~~------------------------------------------------~-~L~~L 309 (570)
T 2z63_A 281 LTNVSSFSLVSVTIE-RVKD-FSYN------------------------------------------------F-GWQHL 309 (570)
T ss_dssp GTTCSEEEEESCEEC-SCCB-CCSC------------------------------------------------C-CCSEE
T ss_pred cCcccEEEecCccch-hhhh-hhcc------------------------------------------------C-CccEE
Confidence 888888888888775 3332 1111 1 22222
Q ss_pred EccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccC
Q 042359 510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSI 589 (979)
Q Consensus 510 ~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~ 589 (979)
++++|.+... |. ..
T Consensus 310 ~l~~n~~~~l-~~---~~-------------------------------------------------------------- 323 (570)
T 2z63_A 310 ELVNCKFGQF-PT---LK-------------------------------------------------------------- 323 (570)
T ss_dssp EEESCBCSSC-CB---CB--------------------------------------------------------------
T ss_pred eeccCccccc-Cc---cc--------------------------------------------------------------
Confidence 2222222211 00 01
Q ss_pred ChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccC--CcccCCCCCccEEEcCCccccccccc
Q 042359 590 SPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL--PYSMGSLTSLVWLHLGENRLSGNILV 667 (979)
Q Consensus 590 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~ 667 (979)
+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|.+++..+.
T Consensus 324 ----------l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 391 (570)
T 2z63_A 324 ----------LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391 (570)
T ss_dssp ----------CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE
T ss_pred ----------ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc
Confidence 12222222222222222221 23344555555555444322 34444555555555555555543332
Q ss_pred cccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhccc
Q 042359 668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG 747 (979)
Q Consensus 668 ~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 747 (979)
+..+++|++|++++|.+.+..|. ..+..+++|+.|++++|++.+..|..+.++++
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSEF------------------------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTTS------------------------CTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred -ccccCCCCEEEccCCccccccch------------------------hhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 55555555555555555432221 23455666666666666666666666555554
Q ss_pred CcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccc-ccccccccCCCCCCEEeCCCC
Q 042359 748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS-GKIPLEVTNLKALQSLNFSYN 826 (979)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N 826 (979)
| +.|+|++|+++ +.+|..++.+++|+.|+|++|
T Consensus 447 L----------------------------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 447 L----------------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp C----------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred C----------------------------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 4 67777777776 578888999999999999999
Q ss_pred cceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCc
Q 042359 827 SFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSST 884 (979)
Q Consensus 827 ~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~ 884 (979)
++++.+|..++.+++|++|+|++|++++..|..+..+++|++|++++|+++|.+|...
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999889999999999999999999999888889999999999999999999988653
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=438.80 Aligned_cols=509 Identities=21% Similarity=0.205 Sum_probs=339.7
Q ss_pred CCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC
Q 042359 199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN 278 (979)
Q Consensus 199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~ 278 (979)
.+.++.++..++.++.. -.+++++|++++|+++++.+..+..+++|++|++++|.++ +..|..+.+
T Consensus 9 ~~~~~c~~~~l~~ip~~-----l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---------~i~~~~~~~ 74 (570)
T 2z63_A 9 NITYQCMELNFYKIPDN-----LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQS 74 (570)
T ss_dssp TTEEECCSSCCSSCCSS-----SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---------EECTTTTTT
T ss_pred CcEEEeCCCCccccCCC-----ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC---------ccCcccccC
Confidence 35677777666665431 1357888888888888888888888888888888888887 334566788
Q ss_pred CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcc-cCcccccCCCCCC
Q 042359 279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG-RIPRSMASLCNLK 357 (979)
Q Consensus 279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~-~~~~~l~~l~~L~ 357 (979)
+++|++|++++|.+++..|..|.++++|++|++++|.++ .+++..++++++|++|++++| .+.+ .+|..++++++|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCC
T ss_pred chhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCC-ccceecChhhhcccCCCC
Confidence 888888888888888777778888888888888888887 343446788888888888888 6665 4677777777777
Q ss_pred eeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCC----cEEeccCCcCcccCcccccCCCCC
Q 042359 358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI----VTLDFANNSIVGLIPESLGQLSTL 433 (979)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L 433 (979)
+|++++|.+.+..+. .++.+++| +.|++++|.+.+..|..+..+ +|
T Consensus 153 ~L~l~~n~l~~~~~~-----------------------------~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L 202 (570)
T 2z63_A 153 HLDLSSNKIQSIYCT-----------------------------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202 (570)
T ss_dssp EEECTTSCCCEECGG-----------------------------GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred EEeCcCCccceecHH-----------------------------HccchhccchhhhhcccCCCCceecCHHHhccC-cc
Confidence 777777776654443 33333333 455555555555544444433 45
Q ss_pred CEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCC--CccEEEc
Q 042359 434 RVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQK--HLQFLYL 511 (979)
Q Consensus 434 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~--~L~~L~L 511 (979)
++|++++|..........+..++.++...+....+... ..++.+ ....+..+. .++.+++
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~~~----------~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLEKF----------DKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCEEC----------CTTTTGGGGGSEEEEEEE
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCc--------hhhhhc----------chhhhccccccchhhhhh
Confidence 55555555433222222445555555444432221100 000000 000111111 2445555
Q ss_pred cCC-CCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCC
Q 042359 512 VNS-SISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS 590 (979)
Q Consensus 512 s~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~ 590 (979)
+++ .+.+..+..+ ..
T Consensus 265 ~~~~~~~~~~~~~~-~~--------------------------------------------------------------- 280 (570)
T 2z63_A 265 AYLDYYLDDIIDLF-NC--------------------------------------------------------------- 280 (570)
T ss_dssp EETTEEESCSTTTT-GG---------------------------------------------------------------
T ss_pred hcchhhhhhchhhh-cC---------------------------------------------------------------
Confidence 544 2222222211 11
Q ss_pred hhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccccc
Q 042359 591 PFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLK 670 (979)
Q Consensus 591 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 670 (979)
+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. .
T Consensus 281 ---------l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~ 344 (570)
T 2z63_A 281 ---------LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--V 344 (570)
T ss_dssp ---------GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--C
T ss_pred ---------cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--c
Confidence 233333444444333 234444444 5566666666555 4443 3455666666666666554443 5
Q ss_pred CCCCCCEEeccCCcccccC--ChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccC-cchhhccc
Q 042359 671 NCTALESLDVGENEFVGNI--PTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP-NCINNLTG 747 (979)
Q Consensus 671 ~l~~L~~L~L~~N~l~~~i--p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~ 747 (979)
.+++|++|++++|++++.. |..+. .+++|+.|++++|.+.+..+. +..+++|+.|++++|++.+..| ..+.++++
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred cCCCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 6667777777777766432 55555 677888888888877754444 8889999999999999987766 34555554
Q ss_pred CcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCc
Q 042359 748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNS 827 (979)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 827 (979)
| +.|++++|++++.+|..+..+++|+.|++++|+
T Consensus 423 L----------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 423 L----------------------------------------------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp C----------------------------------------------CEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred C----------------------------------------------CEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence 4 899999999999999999999999999999999
Q ss_pred ce-eccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCC-ccCCCccccccCCCCC
Q 042359 828 FT-GRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDL 899 (979)
Q Consensus 828 l~-~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l 899 (979)
++ +.+|..++.+++|++|||++|++++..|..+..+++|++|++++|++++.+|.. ..+..+....+.+|.+
T Consensus 457 l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 98 689999999999999999999999999999999999999999999999877753 4566666677778744
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-44 Score=430.17 Aligned_cols=485 Identities=21% Similarity=0.238 Sum_probs=326.4
Q ss_pred CCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeec
Q 042359 282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNL 361 (979)
Q Consensus 282 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L 361 (979)
....+.+++.++ .+|..+. ++|++|++++|.+++.. +..++++++|++|++++| .+.+..|..|..+++|++|++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCccCccC-hhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEEC
Confidence 334566666665 4454443 56777777777766333 566677777777777777 666666666666665555555
Q ss_pred cCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCccc-CcccccCCCCCCEEEcCC
Q 042359 362 RGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGL-IPESLGQLSTLRVLRIND 440 (979)
Q Consensus 362 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~ 440 (979)
++|.+.+ ..+..++.+++|++|++++|.+++. .|..++++++|++|++++
T Consensus 82 s~n~l~~-----------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 82 SDNHLSS-----------------------------LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp TTSCCCS-----------------------------CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred CCCccCc-----------------------------cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence 5555443 3344455666666666666666642 345566666666666666
Q ss_pred CcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCC
Q 042359 441 NKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIF 520 (979)
Q Consensus 441 n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 520 (979)
|++.+.++...+.++++|+.|++++|.+... .|.++..+++|++|+++.|.+.. .
T Consensus 133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~l~~l~~L~~L~l~~n~~~~-~ 187 (549)
T 2z81_A 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNY------------------------QSQSLKSIRDIHHLTLHLSESAF-L 187 (549)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEE------------------------CTTTTTTCSEEEEEEEECSBSTT-H
T ss_pred CccccccCHhhhhcccccCeeeccCCccccc------------------------ChhhhhccccCceEecccCcccc-c
Confidence 6644455544555565555555555555433 33344444455555555554432 2
Q ss_pred chHHHhcCCCccEEEcccCcCCCCC----CCcccccCCcEEEeecccCCCCCC-------ccCCCCcEEEcccccccccC
Q 042359 521 PIRFLKSASQLKFLDLGQNQIHGPI----PNLTEFTGLLILSVYSNNMSGPLP-------LISSNLVFLDLSNNLFSGSI 589 (979)
Q Consensus 521 ~~~~~~~~~~L~~L~Ls~n~l~~~~----~~l~~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~Ls~n~l~~~~ 589 (979)
+..+...+++|++|++++|++.+.. +....++.|+.|++++|.+.+..+ ....+|+.+++++|.+.+..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 3333444555566666655555421 112234556666666665543222 12456777777777665531
Q ss_pred --ChhhhhcccCCCcccEEeccCcccccc-----CCccccCCCCCCEEEccCCcccccCCccc-CCCCCccEEEcCCccc
Q 042359 590 --SPFLCYRINETKSLNALQLNDNYLNGE-----LPDCWMSYQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRL 661 (979)
Q Consensus 590 --~~~~~~~l~~~~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l 661 (979)
+......+..+++|+.|++.++.+... ++..+....+|++|++++|++. .+|..+ ..+++|++|++++|++
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc
Confidence 111112344567788888888765532 1222334568999999999987 677766 4789999999999999
Q ss_pred ccccc---ccccCCCCCCEEeccCCcccccCC--hhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCcccc
Q 042359 662 SGNIL---VSLKNCTALESLDVGENEFVGNIP--TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSG 736 (979)
Q Consensus 662 ~~~~p---~~l~~l~~L~~L~L~~N~l~~~ip--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 736 (979)
++.+| ..+..+++|++|++++|++++..+ ..+. .+++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~- 423 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR- 423 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG-GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhh-cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-
Confidence 98775 347889999999999999974322 2333 7899999999999998 68888999999999999999986
Q ss_pred ccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCC
Q 042359 737 AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK 816 (979)
Q Consensus 737 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~ 816 (979)
.+|..+ .+.|+.|||++|++++.+ +.++
T Consensus 424 ~l~~~~------------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~ 451 (549)
T 2z81_A 424 VVKTCI------------------------------------------------PQTLEVLDVSNNNLDSFS----LFLP 451 (549)
T ss_dssp CCCTTS------------------------------------------------CTTCSEEECCSSCCSCCC----CCCT
T ss_pred cccchh------------------------------------------------cCCceEEECCCCChhhhc----ccCC
Confidence 344322 123589999999999753 5789
Q ss_pred CCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCC
Q 042359 817 ALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS 883 (979)
Q Consensus 817 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 883 (979)
+|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..++.+++|++|++++|+++|.+|..
T Consensus 452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 9999999999999 7887 578999999999999999999999999999999999999999988843
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.6e-43 Score=428.65 Aligned_cols=528 Identities=22% Similarity=0.220 Sum_probs=324.8
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL 193 (979)
Q Consensus 114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l 193 (979)
.+|+.+. +++++|||++|.|+.+ .|..|.++++|++|||++|+|++..|..|+++++|++|+|++|++..++.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~---- 117 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL---- 117 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG----
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH----
Confidence 4555442 4789999999999975 36789999999999999999997777889999999999999988766553
Q ss_pred cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCC
Q 042359 194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP 273 (979)
Q Consensus 194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p 273 (979)
..+.++++|++|++++|+++++++..++++++|++|++++|.++. ..+|
T Consensus 118 -----------------------~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~--------~~~~ 166 (635)
T 4g8a_A 118 -----------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--------FKLP 166 (635)
T ss_dssp -----------------------GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--------CCCC
T ss_pred -----------------------HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc--------CCCc
Confidence 234567777777777777777777778888888888888888874 3466
Q ss_pred ccccCCCCCCEEeccCCcCcccCchhhccCCCC----CEEeccCCcCccccCcccccccCccCEEecCCCCCCc-ccCcc
Q 042359 274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL----EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIE-GRIPR 348 (979)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~-~~~~~ 348 (979)
..++.+++|++|++++|++++..+..+..+.++ ..++++.|.+. .+++..+ ....++.+++.+| ... ...+.
T Consensus 167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n-~~~~~~~~~ 243 (635)
T 4g8a_A 167 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNN-FDSLNVMKT 243 (635)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESC-CSSHHHHHH
T ss_pred hhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcc-cccccccch
Confidence 777888888888888888887777777655443 35777777776 3423333 3334566666666 222 22233
Q ss_pred cccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCccccc
Q 042359 349 SMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLG 428 (979)
Q Consensus 349 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 428 (979)
.+..+..++...+..+...... .+.......+.
T Consensus 244 ~~~~l~~l~~~~l~~~~~~~~~-----------------------------------------------~l~~~~~~~~~ 276 (635)
T 4g8a_A 244 CIQGLAGLEVHRLVLGEFRNEG-----------------------------------------------NLEKFDKSALE 276 (635)
T ss_dssp HHHTTTTCEEEEEEEECCTTSC-----------------------------------------------CCSCCCTTTTG
T ss_pred hhcCCccccccccccccccccc-----------------------------------------------ccccccccccc
Confidence 3444444444433322111000 00001111122
Q ss_pred CCCCCCEEEcCCCcCcccc--ChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCc
Q 042359 429 QLSTLRVLRINDNKLNGTL--SAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHL 506 (979)
Q Consensus 429 ~l~~L~~L~L~~n~l~~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L 506 (979)
.+..+...++..+...... ....+..+.+++.+++.++.+.
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------------------------------- 319 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE------------------------------------- 319 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-------------------------------------
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-------------------------------------
Confidence 2222222222222111000 0001222222222222222221
Q ss_pred cEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEccccccc
Q 042359 507 QFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFS 586 (979)
Q Consensus 507 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~ 586 (979)
...+. .....++.|++.+|.+.+. .+.....++.++++.|.+.
T Consensus 320 -----------~~~~~---~~~~~L~~L~l~~~~~~~~-----------------------~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 320 -----------RVKDF---SYNFGWQHLELVNCKFGQF-----------------------PTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp -----------ECGGG---GSCCCCSEEEEESCEESSC-----------------------CCCBCTTCCEEEEESCCSC
T ss_pred -----------ccccc---ccchhhhhhhcccccccCc-----------------------CcccchhhhhcccccccCC
Confidence 11110 1112233333333333221 1111223333333333322
Q ss_pred ccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCccc--ccCCcccCCCCCccEEEcCCcccccc
Q 042359 587 GSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFT--GNLPYSMGSLTSLVWLHLGENRLSGN 664 (979)
Q Consensus 587 ~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~ 664 (979)
... ....+++|+.|++++|.+. +..+..+..+.+|+++++..|....
T Consensus 363 ~~~------------------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~- 411 (635)
T 4g8a_A 363 NAF------------------------------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT- 411 (635)
T ss_dssp CBC------------------------------CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred CCc------------------------------ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-
Confidence 111 1123344444444444442 1233334444555555555555542
Q ss_pred ccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccc-cccCcchh
Q 042359 665 ILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS-GAIPNCIN 743 (979)
Q Consensus 665 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~ 743 (979)
.+..+..+++|+.+++++|......+...+..+++++.++++.|.+.+..|..+..++.|+.|++++|++. +.+|..+.
T Consensus 412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~ 491 (635)
T 4g8a_A 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence 33345556666666666665554444444445667777777777777777777788888899999888754 34566666
Q ss_pred hcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeC
Q 042359 744 NLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNF 823 (979)
Q Consensus 744 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L 823 (979)
.+++| +.|||++|++++.+|..|+++++|++|+|
T Consensus 492 ~l~~L----------------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 492 ELRNL----------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCTTC----------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hcccc----------------------------------------------CEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 65555 78999999999989999999999999999
Q ss_pred CCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCC-CCCCEEEccCCcccccC
Q 042359 824 SYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSL-TFLNHLNLSNNNLTGKI 880 (979)
Q Consensus 824 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~i 880 (979)
++|+|++..|..|+.+++|++|||++|+|++.+|+.+..+ ++|++|+|++|++++..
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999998888899999999999999999999999999998 68999999999999754
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.5e-44 Score=422.97 Aligned_cols=480 Identities=20% Similarity=0.230 Sum_probs=283.2
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL 193 (979)
Q Consensus 114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l 193 (979)
.+|+.+. ++|++|+|++|.+++. .|..|+.+++|++|++++|++++..|..|+++++|++|++++|.+...+.. .+
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~ 94 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WF 94 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HH
T ss_pred cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-Hh
Confidence 4555554 7899999999999876 578899999999999999999988888999999999999999987765532 24
Q ss_pred cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCC-CCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccC
Q 042359 194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ-LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPI 272 (979)
Q Consensus 194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 272 (979)
+++++|++|++++|.+.+.. .+..+..+++|++|++++|+ +..+++..
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~------------------------------ 143 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNVETFSEIRRID------------------------------ 143 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEESSSCCEECTTT------------------------------
T ss_pred ccCCCCcEEECCCCcccccc-hhhhhhccCCccEEECCCCccccccCHhh------------------------------
Confidence 45555555555555554321 11223444444444444444 23333334
Q ss_pred CccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccC--c-cc
Q 042359 273 PRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRI--P-RS 349 (979)
Q Consensus 273 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~--~-~~ 349 (979)
+.++++|++|++++|.+++..|..+..+++|++|+++.|.+. .++...++.+++|++|++++| .+.+.. + ..
T Consensus 144 ---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 218 (549)
T 2z81_A 144 ---FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDT-NLARFQFSPLPV 218 (549)
T ss_dssp ---TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSS
T ss_pred ---hhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCC-ccccccccccch
Confidence 444444444444444444444444444444444544444443 221222233444555555544 333321 1 11
Q ss_pred ccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCcccc------ccccCCCCCCcEEeccCCcCccc-
Q 042359 350 MASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHL------TDQLGQFKNIVTLDFANNSIVGL- 422 (979)
Q Consensus 350 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~Ls~n~l~~~- 422 (979)
...+++|+.|++++|.+.+..+..+......... ++.+++++|.+.+.. ...+..+++|+.|++.++.+...
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE-LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT-CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhcc-ccccccccccccccccccccchhhhhhhcccccccccccccchhh
Confidence 2234455555555555544333322222222222 555555555443321 12234556666666666655432
Q ss_pred ----CcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCCh
Q 042359 423 ----IPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPL 498 (979)
Q Consensus 423 ----~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 498 (979)
++..+...++|++|++++|++. .+|...+..+++|+.|++++|.+...... .+.
T Consensus 298 ~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~ 355 (549)
T 2z81_A 298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK---------------------NSA 355 (549)
T ss_dssp GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH---------------------HHT
T ss_pred hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc---------------------chh
Confidence 1111223456677777777665 56654445666666666666665432100 011
Q ss_pred hhhCCCCccEEEccCCCCCCCCc-hHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcE
Q 042359 499 WLYSQKHLQFLYLVNSSISDIFP-IRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVF 577 (979)
Q Consensus 499 ~l~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 577 (979)
++..+++|++|++++|++.+..+ ...+..+++|++|++++|++++..+.+..+++ |++
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~---------------------L~~ 414 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK---------------------MRF 414 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT---------------------CCE
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc---------------------ccE
Confidence 23455677777777777766543 13345677777777777777743334444444 455
Q ss_pred EEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcC
Q 042359 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLG 657 (979)
Q Consensus 578 L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 657 (979)
|++++|.+++ +|..+ .++|+.|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|++|+++
T Consensus 415 L~Ls~N~l~~-l~~~~------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 415 LNLSSTGIRV-VKTCI------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp EECTTSCCSC-CCTTS------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred EECCCCCccc-ccchh------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence 5555555442 11111 246777777777776542 46778888899998888 6775 4678899999999
Q ss_pred CccccccccccccCCCCCCEEeccCCcccccCC
Q 042359 658 ENRLSGNILVSLKNCTALESLDVGENEFVGNIP 690 (979)
Q Consensus 658 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip 690 (979)
+|++++..|..+..+++|++|++++|++.+.+|
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999998888889999999999999999988877
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=418.08 Aligned_cols=459 Identities=17% Similarity=0.177 Sum_probs=293.2
Q ss_pred CEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCc
Q 042359 307 EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLE 386 (979)
Q Consensus 307 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~ 386 (979)
+++++++|.++ .+ |..+. ++|++|++++| .+.+..|..+..+++|++|++++|++.+..|. .++.++. |+
T Consensus 3 ~~l~ls~n~l~-~i-p~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~-L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLI-HV-PKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQE-LE 72 (520)
T ss_dssp CEEECTTSCCS-SC-CCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTT-CC
T ss_pred ceEecCCCCcc-cc-ccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChH----HhhcccC-CC
Confidence 46888888887 56 44444 78888888888 77777777888888888888888877766555 4444444 67
Q ss_pred EEECcCCcCccccccccCCCCCCcEEeccCCcCcc-cCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCC--cEEEc
Q 042359 387 SLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVG-LIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKL--SWFRV 463 (979)
Q Consensus 387 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L--~~L~L 463 (979)
+|++++|++++ +|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|++.+ ..+..+++| +.|++
T Consensus 73 ~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 73 YLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLL 145 (520)
T ss_dssp EEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEE
T ss_pred EEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEe
Confidence 77777776663 4433 56666667776666665 345666666666666666666653 134445555 55555
Q ss_pred cCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCC-CccEEEccCCCCCCCCchHHHhcCCCccEEEcccCc--
Q 042359 464 DGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQK-HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQ-- 540 (979)
Q Consensus 464 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~-- 540 (979)
++|.+.. .+..|..+..+. ....+++++|.+.+..+...+..+++|+.|++++|.
T Consensus 146 ~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 203 (520)
T 2z7x_B 146 VLGETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203 (520)
T ss_dssp EECTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred ecccccc----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence 5554410 333444444333 233455666666655555445556666666666665
Q ss_pred -----CCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccc
Q 042359 541 -----IHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG 615 (979)
Q Consensus 541 -----l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 615 (979)
+.+.++.+..+++|+.|++++| .+++..+..+.... ..++|+.|++++|++.|
T Consensus 204 ~~~~~~~~~~~~l~~l~~L~~L~l~~~---------------------~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~ 261 (520)
T 2z7x_B 204 NKCSYFLSILAKLQTNPKLSNLTLNNI---------------------ETTWNSFIRILQLV-WHTTVWYFSISNVKLQG 261 (520)
T ss_dssp TTTHHHHHHHHGGGGCTTCCEEEEEEE---------------------EEEHHHHHHHHHHH-HTSSCSEEEEEEEEEES
T ss_pred cccceeecchhhhccccchhhcccccc---------------------ccCHHHHHHHHHHh-hhCcccEEEeecccccC
Confidence 4444444445555555544444 43332221111111 12456666666666665
Q ss_pred cCCccc-----cCCCCCCEEEccCCcccccCC-cccCCC---CCccEEEcCCccccccccccccCCCCCCEEeccCCccc
Q 042359 616 ELPDCW-----MSYQNLKTLKLSNNKFTGNLP-YSMGSL---TSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV 686 (979)
Q Consensus 616 ~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 686 (979)
.+|..+ ..+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+.+.. .+..+++|++|++++|+++
T Consensus 262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 262 QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCC
T ss_pred ccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccC
Confidence 666555 5566666666666666 344 233322 45666666666654321 1245666666666666666
Q ss_pred ccCChhHHHhhhccceeeccCCcccC--CCCccccCCCCccEEEccCCccccccCcc-hhhcccCcccccccccccccCC
Q 042359 687 GNIPTWIGERFSRMVVLILRSNKFHG--PLPTGLCDLAFLQILDIADNNLSGAIPNC-INNLTGMVTACSFTRSVQQYLP 763 (979)
Q Consensus 687 ~~ip~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~ 763 (979)
+.+|.++. .+++|+.|++++|++++ .+|..+..+++|+.|++++|++++.+|.. +..++.
T Consensus 338 ~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~---------------- 400 (520)
T 2z7x_B 338 DTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS---------------- 400 (520)
T ss_dssp TTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT----------------
T ss_pred hhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc----------------
Confidence 65666554 56666666666666665 45566777788888888888887656653 333333
Q ss_pred CCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCC
Q 042359 764 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLE 843 (979)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~ 843 (979)
|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|+
T Consensus 401 ------------------------------L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 401 ------------------------------LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp ------------------------------CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred ------------------------------CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 47888888888888887765 78999999999999 8888888999999
Q ss_pred EEECcCCcccccCCCC-CCCCCCCCEEEccCCcccccCC
Q 042359 844 SIDFSANQLSGEIPES-MSSLTFLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 844 ~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip 881 (979)
+|||++|+++ .+|.. +..+++|++|++++|+++|..+
T Consensus 448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 9999999998 46655 8889999999999999998765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.7e-43 Score=410.14 Aligned_cols=466 Identities=20% Similarity=0.242 Sum_probs=283.9
Q ss_pred cEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCC
Q 042359 226 VELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIH 305 (979)
Q Consensus 226 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 305 (979)
++|++++|+++.++.. +. ++|++|++++|.++ +..|..+.++++|++|++++|++++..|..|.++++
T Consensus 3 ~~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD-LS--QKTTILNISQNYIS---------ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTSCCSSCCCS-CC--TTCSEEECCSSCCC---------CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred ceEecCCCCccccccc-cc--ccccEEECCCCccc---------ccChhhccccccccEEecCCCccCCcChHHhhcccC
Confidence 4677777777765542 22 67777777777776 334456677777777777777777666667777777
Q ss_pred CCEEeccCCcCccccCcccccccCccCEEecCCCCCCcc-cCcccccCCCCCCeeeccCccCCcccchhhhhccccccCC
Q 042359 306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG-RIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNG 384 (979)
Q Consensus 306 L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 384 (979)
|++|++++|.++ .+ |.. .+++|++|++++| .+.+ .+|..++.+++|++|++++|.+.+.
T Consensus 71 L~~L~Ls~N~l~-~l-p~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--------------- 130 (520)
T 2z7x_B 71 LEYLDLSHNKLV-KI-SCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS--------------- 130 (520)
T ss_dssp CCEEECCSSCCC-EE-ECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG---------------
T ss_pred CCEEecCCCcee-ec-Ccc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchh---------------
Confidence 777777777776 45 333 6677777777777 5655 4566677777777766666665541
Q ss_pred CcEEECcCCcCccccccccCCCCCC--cEEeccCCcC--cccCcccccCCC-CCCEEEcCCCcCccccChhhhcCCCCCc
Q 042359 385 LESLDLRSDSIYGHLTDQLGQFKNI--VTLDFANNSI--VGLIPESLGQLS-TLRVLRINDNKLNGTLSAIHFANLTKLS 459 (979)
Q Consensus 385 L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 459 (979)
.+..+++| ++|++++|.+ .+..|..+..+. +...+++++|++.+.++...+.++++|+
T Consensus 131 -----------------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 131 -----------------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193 (520)
T ss_dssp -----------------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred -----------------hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence 12223333 5555555555 444444444333 1223445555555444444444445544
Q ss_pred EEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHh--cCCCccEEEcc
Q 042359 460 WFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLK--SASQLKFLDLG 537 (979)
Q Consensus 460 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~~L~Ls 537 (979)
.+++++|....... .+.+.+| .+..+++|+.|++++|.+.+..+..+.. ..++|++|+++
T Consensus 194 ~L~l~~n~~~~~~~-----------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 194 LSNIKCVLEDNKCS-----------------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp ECCEEECCSTTTTH-----------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred eccccccccccccc-----------------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 44444443100000 0000111 2344455555555555544332221111 12345555555
Q ss_pred cCcCCCCCCC-cccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCcccccc
Q 042359 538 QNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE 616 (979)
Q Consensus 538 ~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 616 (979)
+|.+.|.+|. +..+ ..+.++.|+.+++++|.+ .
T Consensus 256 ~n~l~~~~p~~~~~~--------------------------------------------~~~~l~~L~~l~l~~n~~--~ 289 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDY--------------------------------------------SGTSLKALSIHQVVSDVF--G 289 (520)
T ss_dssp EEEEESCCCCCCCCC--------------------------------------------CSCCCCEEEEEEEEECCC--C
T ss_pred cccccCccccchhhc--------------------------------------------ccccCceeEeccccccce--e
Confidence 5555544441 1000 002245555555555555 3
Q ss_pred CC-ccccCC---CCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccc--cCC
Q 042359 617 LP-DCWMSY---QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG--NIP 690 (979)
Q Consensus 617 ~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip 690 (979)
+| ..+..+ .+|+.|++++|.+... + .+..+++|++|++++|++++.+|..+.++++|++|++++|++++ .+|
T Consensus 290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp SCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred cchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 33 222222 4566666666665522 1 12456677777777777777677777777777777777777764 455
Q ss_pred hhHHHhhhccceeeccCCcccCCCCcc-ccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccc
Q 042359 691 TWIGERFSRMVVLILRSNKFHGPLPTG-LCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVG 769 (979)
Q Consensus 691 ~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 769 (979)
..+. .+++|+.|++++|++++.+|.. +..+++|+.|++++|++++.+|..+. +
T Consensus 368 ~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~----------------------- 421 (520)
T 2z7x_B 368 EMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P----------------------- 421 (520)
T ss_dssp HHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T-----------------------
T ss_pred HHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c-----------------------
Confidence 5555 5777777888888777756654 77789999999999999877776542 2
Q ss_pred eeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC-CCccCCCCEEECc
Q 042359 770 VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES-IGVMRSLESIDFS 848 (979)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~~l~~L~~LdLs 848 (979)
.|+.|||++|+++ .+|..+..+++|+.|+|++|+++ .+|.. +..+++|+.|+++
T Consensus 422 -----------------------~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 422 -----------------------RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp -----------------------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred -----------------------cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 3488999999999 89998889999999999999999 57765 9999999999999
Q ss_pred CCcccccCC
Q 042359 849 ANQLSGEIP 857 (979)
Q Consensus 849 ~N~l~~~ip 857 (979)
+|++++..+
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 999998654
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.2e-43 Score=423.55 Aligned_cols=333 Identities=20% Similarity=0.321 Sum_probs=201.8
Q ss_pred ccccccC--CCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCc-Ccc-ccChhhhcCCCCCcEEEccCCccccccc
Q 042359 398 HLTDQLG--QFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNK-LNG-TLSAIHFANLTKLSWFRVDGNKLTLGVK 473 (979)
Q Consensus 398 ~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 473 (979)
.+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|. .+..++
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~----------------- 541 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLA----------------- 541 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHH-----------------
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhh-----------------
Confidence 5788877 89999999999999999999889999999999999998 877 6665 333322
Q ss_pred CCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCch-HHHhcCCCccEEEcccCcCCCCCCCccccc
Q 042359 474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPI-RFLKSASQLKFLDLGQNQIHGPIPNLTEFT 552 (979)
Q Consensus 474 ~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~ 552 (979)
..+..+++|+.|++++|.+. .+|. ..+..+++|++|++++|.+. .+|.+..
T Consensus 542 ------------------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~-- 593 (876)
T 4ecn_A 542 ------------------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGT-- 593 (876)
T ss_dssp ------------------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCT--
T ss_pred ------------------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcC--
Confidence 00112334555555555555 2332 22344556666666666555 3332222
Q ss_pred CCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCC-CCEEE
Q 042359 553 GLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQN-LKTLK 631 (979)
Q Consensus 553 ~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~ 631 (979)
+++|+.|++++|.+. .+|..+..+++ |++|+
T Consensus 594 -----------------------------------------------L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 594 -----------------------------------------------NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp -----------------------------------------------TSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred -----------------------------------------------CCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence 233444444444444 34444444444 55555
Q ss_pred ccCCcccccCCcccCCCCC--ccEEEcCCcccccccccc---cc--CCCCCCEEeccCCcccccCChhHHHhhhccceee
Q 042359 632 LSNNKFTGNLPYSMGSLTS--LVWLHLGENRLSGNILVS---LK--NCTALESLDVGENEFVGNIPTWIGERFSRMVVLI 704 (979)
Q Consensus 632 Ls~N~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~---l~--~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~ 704 (979)
+++|+++ .+|..+..++. |+.|++++|++++.+|.. +. .+++|+.|++++|+++ .+|.+++..+++|+.|+
T Consensus 626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTII 703 (876)
T ss_dssp CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEE
T ss_pred CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEE
Confidence 5555444 44444443332 555555555554433321 11 2235556666666655 55555554555666666
Q ss_pred ccCCcccCCCCccccC--------CCCccEEEccCCccccccCcchh--hcccCcccccccccccccCCCCcccceeeee
Q 042359 705 LRSNKFHGPLPTGLCD--------LAFLQILDIADNNLSGAIPNCIN--NLTGMVTACSFTRSVQQYLPLPIDVGVILVE 774 (979)
Q Consensus 705 L~~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (979)
|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|
T Consensus 704 Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-------------------------- 755 (876)
T 4ecn_A 704 LSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-------------------------- 755 (876)
T ss_dssp CCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC--------------------------
T ss_pred CCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc--------------------------
Confidence 6666665 44443332 226777777777776 5665554 44443
Q ss_pred eeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCC------CcceeccCCCCCccCCCCEEECc
Q 042359 775 KASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY------NSFTGRIPESIGVMRSLESIDFS 848 (979)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~~~~~l~~L~~LdLs 848 (979)
+.|||++|++++ +|..++++++|+.|+|++ |++.+.+|..++++++|+.|+|+
T Consensus 756 --------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 756 --------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp --------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred --------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 667777777775 677777777777777755 77888888888888888888888
Q ss_pred CCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359 849 ANQLSGEIPESMSSLTFLNHLNLSNNNLTG 878 (979)
Q Consensus 849 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 878 (979)
+|++ +.+|..+. ++|+.|||++|++..
T Consensus 815 ~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 815 SNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp SSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 8888 67887765 578888888888764
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-43 Score=421.23 Aligned_cols=253 Identities=22% Similarity=0.287 Sum_probs=165.1
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCC-ccEEEcCCccccccccccccCCC--CCC
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTS-LVWLHLGENRLSGNILVSLKNCT--ALE 676 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L~ 676 (979)
+++|+.|++++|++.|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|+
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence 4455555555555555555 4555555555555555555 45555555555 555555555555 4444444433 455
Q ss_pred EEeccCCcccccCChhHHH------hhhccceeeccCCcccCCCCcc-ccCCCCccEEEccCCccccccCcchhhcccCc
Q 042359 677 SLDVGENEFVGNIPTWIGE------RFSRMVVLILRSNKFHGPLPTG-LCDLAFLQILDIADNNLSGAIPNCINNLTGMV 749 (979)
Q Consensus 677 ~L~L~~N~l~~~ip~~~~~------~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~ 749 (979)
+|++++|++++.+|.++.. .+++|+.|++++|+++ .+|.. +..+++|+.|++++|+++ .+|..+.....
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-- 481 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-- 481 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT--
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc--
Confidence 5555555555544443320 2345566666666665 33333 344666777777777776 55543221100
Q ss_pred ccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccccccccccc--CCCCCCEEeCCCCc
Q 042359 750 TACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT--NLKALQSLNFSYNS 827 (979)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~ 827 (979)
.....++.|+.|||++|+++ .+|..+. .+++|+.|+|++|+
T Consensus 482 ------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 482 ------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp ------------------------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred ------------------------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence 00001235689999999999 8999987 99999999999999
Q ss_pred ceeccCCCCCccCCCCEEEC------cCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCCCC
Q 042359 828 FTGRIPESIGVMRSLESIDF------SANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL 899 (979)
Q Consensus 828 l~~~ip~~~~~l~~L~~LdL------s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l 899 (979)
+++ +|..++++++|+.|+| ++|++.+.+|..+..+++|++|||++|++ +.||.... ..+....+++|.+
T Consensus 525 l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l 599 (636)
T 4eco_A 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPN 599 (636)
T ss_dssp CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTT
T ss_pred CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCC
Confidence 997 9999999999999999 56889999999999999999999999999 78997532 5666666777743
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.8e-39 Score=388.60 Aligned_cols=501 Identities=20% Similarity=0.190 Sum_probs=329.1
Q ss_pred CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeee
Q 042359 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN 360 (979)
Q Consensus 281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~ 360 (979)
++++|+|++|++++..+..|.++++|++|+|++|+++ .+++.+|+++++|++|+|++| .+++..+..|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 5666666666666655566666666666666666666 344556666666666666666 56555555556555555555
Q ss_pred ccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCccc-CcccccCCCCCCEEEcC
Q 042359 361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGL-IPESLGQLSTLRVLRIN 439 (979)
Q Consensus 361 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~ 439 (979)
+++|.+.+ ..+..|+++++|++|++++|.+++. .|..++.+++|++|+++
T Consensus 131 Ls~N~l~~-----------------------------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 131 AVETNLAS-----------------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CTTSCCCC-----------------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCCCcCCC-----------------------------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 55554443 3333455566666666666666542 34555666666666666
Q ss_pred CCcCccccChhhhcCCCCC----cEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCC
Q 042359 440 DNKLNGTLSAIHFANLTKL----SWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSS 515 (979)
Q Consensus 440 ~n~l~~~l~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~ 515 (979)
+|++.+. +...+..+.++ ..++++.|.+.......+. ...++.+++.+|.
T Consensus 182 ~N~l~~~-~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-------------------------~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 182 SNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-------------------------EIRLHKLTLRNNF 235 (635)
T ss_dssp SSCCCEE-CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-------------------------TCEEEEEEEESCC
T ss_pred Ccccccc-ccccccchhhhhhhhhhhhcccCcccccCccccc-------------------------chhhhhhhhhccc
Confidence 6666532 22234333322 2455555555433222211 1223333333333
Q ss_pred CCCCCchHHHhcCCCccEEEcccCcCCC------CCC-CcccccCCcEEEeecccCCCCC------CccCCCCcEEEccc
Q 042359 516 ISDIFPIRFLKSASQLKFLDLGQNQIHG------PIP-NLTEFTGLLILSVYSNNMSGPL------PLISSNLVFLDLSN 582 (979)
Q Consensus 516 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~-~l~~~~~L~~L~l~~n~l~~~~------~~~~~~L~~L~Ls~ 582 (979)
.........+..++.++...+..+.... ... .+.....+....+..+...... .....+++.+++.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 3322222233333444433332221111 111 2223334444444433322111 11245788888888
Q ss_pred ccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccc
Q 042359 583 NLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS 662 (979)
Q Consensus 583 n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 662 (979)
+.+....+ +.....++.|++.+|.+.+..+. .+..|+.+++..|.+.... ....+++|+.|++++|.+.
T Consensus 316 ~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 316 VTIERVKD------FSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp CEEEECGG------GGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCB
T ss_pred cccccccc------cccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccc
Confidence 87665322 23367899999999988755443 4567899999999876433 3557899999999999886
Q ss_pred c--cccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCC-ccccCCCCccEEEccCCccccccC
Q 042359 663 G--NILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TGLCDLAFLQILDIADNNLSGAIP 739 (979)
Q Consensus 663 ~--~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p 739 (979)
. ..+..+..+.+|+++++..|...+. +..+. .+++|+.+++.+|......+ ..+..+++++.+++++|.+.+..|
T Consensus 385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~ 462 (635)
T 4g8a_A 385 FKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 462 (635)
T ss_dssp EEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred cccccccchhhhhhhhhhhccccccccc-ccccc-ccccccchhhhhccccccccccccccccccccccccccccccccc
Confidence 3 3556677889999999999988754 44444 68999999999988776654 457889999999999999998877
Q ss_pred cchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcc-cccccccccCCCCC
Q 042359 740 NCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF-SGKIPLEVTNLKAL 818 (979)
Q Consensus 740 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l-~~~ip~~l~~l~~L 818 (979)
..+..++.+ +.|+|++|++ .+.+|..+..+++|
T Consensus 463 ~~~~~~~~L----------------------------------------------~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 463 GIFNGLSSL----------------------------------------------EVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TTTTTCTTC----------------------------------------------CEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccccchhh----------------------------------------------hhhhhhhcccccccCchhhhhcccc
Confidence 776665555 8899999985 45678899999999
Q ss_pred CEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCc-cC-CCccccccCC
Q 042359 819 QSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSST-QL-QSFDVSSFAG 896 (979)
Q Consensus 819 ~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~-~~~~~~~~~~ 896 (979)
++|||++|++++.+|..|+++++|++|+|++|+|++..|..++.+++|++|||++|++++.+|..- .+ .++...++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 999999999999999999999999999999999999999999999999999999999999888642 22 3455566677
Q ss_pred C
Q 042359 897 N 897 (979)
Q Consensus 897 n 897 (979)
|
T Consensus 577 N 577 (635)
T 4g8a_A 577 N 577 (635)
T ss_dssp C
T ss_pred C
Confidence 7
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7e-41 Score=397.48 Aligned_cols=460 Identities=18% Similarity=0.205 Sum_probs=291.9
Q ss_pred ccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCC
Q 042359 330 SISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI 409 (979)
Q Consensus 330 ~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 409 (979)
..+++++++| .+++ +|..+. ++|++|++++|.+.+..+. .+..++. |++|++++|.+++..|..|..+++|
T Consensus 32 ~~~~l~ls~~-~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~----~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 32 LESMVDYSNR-NLTH-VPKDLP--PRTKALSLSQNSISELRMP----DISFLSE-LRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp -CCEEECTTS-CCCS-CCTTSC--TTCCEEECCSSCCCCCCGG----GTTTCTT-CCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CCcEEEcCCC-CCcc-CCCCCC--CCcCEEECCCCCccccChh----hhccCCC-ccEEECCCCCCCcCCHHHhCCCCCC
Confidence 3467777777 6664 444332 5666666666666655544 3444444 6666666666666556666666666
Q ss_pred cEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEeccc
Q 042359 410 VTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRN 489 (979)
Q Consensus 410 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 489 (979)
++|++++|.++. +|.. .+++|++|++++|++.+.-.+..|.++++|++|++++|.+... .+....+|
T Consensus 103 ~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L------- 169 (562)
T 3a79_B 103 EYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL------- 169 (562)
T ss_dssp CEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS-------
T ss_pred CEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc-------
Confidence 666666666653 3333 5666666666666665311112566666666666666655431 22222222
Q ss_pred ccCCCCCChhhhCCCCccEEEccCCCC--CCCCchHHHhcCCCccEEEcccCcCCCCCC--CcccccCCcEEEeecccC-
Q 042359 490 CYVGSRFPLWLYSQKHLQFLYLVNSSI--SDIFPIRFLKSASQLKFLDLGQNQIHGPIP--NLTEFTGLLILSVYSNNM- 564 (979)
Q Consensus 490 ~~~~~~~p~~l~~~~~L~~L~Ls~n~l--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~l~~~~~L~~L~l~~n~l- 564 (979)
+|++|++++|.+ .+..|..+..-......+++++|.+.+.++ ....+++|+.+++++|..
T Consensus 170 ---------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 234 (562)
T 3a79_B 170 ---------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234 (562)
T ss_dssp ---------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred ---------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence 224555555544 333333221100011133455555554444 233445555555555531
Q ss_pred ----CCCCCc--cCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccc-----cCCCCCCEEEcc
Q 042359 565 ----SGPLPL--ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW-----MSYQNLKTLKLS 633 (979)
Q Consensus 565 ----~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls 633 (979)
.+.++. ..++++.++++++.+.+.....+...+ ..++|++|++++|.+.|.+|..+ ..++.|+.++++
T Consensus 235 ~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~ 313 (562)
T 3a79_B 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313 (562)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence 111111 134566666666655543222221111 13478888888888888887776 566666666666
Q ss_pred CCcccccCCc-ccCC---CCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCc
Q 042359 634 NNKFTGNLPY-SMGS---LTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 709 (979)
Q Consensus 634 ~N~l~~~~p~-~l~~---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~ 709 (979)
.|.+ .+|. .+.. ..+|++|++++|.+.... ....+++|++|++++|++++.+|.++. .+++|+.|++++|+
T Consensus 314 ~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 314 NQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNG 388 (562)
T ss_dssp ECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSC
T ss_pred ccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCC
Confidence 6665 3442 2221 256888888888875322 126778888888888888877787776 68888888888888
Q ss_pred ccC--CCCccccCCCCccEEEccCCccccccCcc-hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccch
Q 042359 710 FHG--PLPTGLCDLAFLQILDIADNNLSGAIPNC-INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVD 786 (979)
Q Consensus 710 l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (979)
+++ .+|..+..+++|+.|++++|++++.+|.. +..++.
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~--------------------------------------- 429 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES--------------------------------------- 429 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT---------------------------------------
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc---------------------------------------
Confidence 886 34567888999999999999998767653 443333
Q ss_pred hhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC-CCCCCC
Q 042359 787 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES-MSSLTF 865 (979)
Q Consensus 787 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~ 865 (979)
|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++
T Consensus 430 -------L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 498 (562)
T 3a79_B 430 -------ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS 498 (562)
T ss_dssp -------CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred -------CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence 48999999999988887765 78999999999999 89988889999999999999999 56665 999999
Q ss_pred CCEEEccCCcccccCCC
Q 042359 866 LNHLNLSNNNLTGKIPS 882 (979)
Q Consensus 866 L~~L~ls~N~l~g~ip~ 882 (979)
|++|++++|+++|.+|.
T Consensus 499 L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCCEECCSCCBCCCHHH
T ss_pred CCEEEecCCCcCCCcch
Confidence 99999999999987763
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-39 Score=387.09 Aligned_cols=470 Identities=21% Similarity=0.237 Sum_probs=269.1
Q ss_pred CCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhc
Q 042359 222 LPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301 (979)
Q Consensus 222 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 301 (979)
+...+++++++|++++++.... ++|++|++++|.++ +..|..+.++++|++|++++|++++..|..|.
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSIS---------ELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCC---------CCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cCCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCcc---------ccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 3344778888888777654322 67788888888776 33446677777888888888887777777777
Q ss_pred cCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcc-cCcccccCCCCCCeeeccCccCCcccchhhhhcccc
Q 042359 302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG-RIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGC 380 (979)
Q Consensus 302 ~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 380 (979)
++++|++|++++|.++ .+ |.. .+++|++|++++| .+.+ ..|..++++++|++|++++|.+.+.
T Consensus 98 ~l~~L~~L~Ls~N~l~-~l-p~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----------- 161 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQ-NI-SCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----------- 161 (562)
T ss_dssp TCTTCCEEECTTSCCC-EE-CSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----------
T ss_pred CCCCCCEEECCCCcCC-cc-Ccc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccC-----------
Confidence 7788888888888776 55 333 6777777777777 6665 3456777777777777777766542
Q ss_pred ccCCCcEEECcCCcCccccccccCCCCCC--cEEeccCCcC--cccCcccccCCC-CCCEEEcCCCcCccccChhhhcCC
Q 042359 381 VSNGLESLDLRSDSIYGHLTDQLGQFKNI--VTLDFANNSI--VGLIPESLGQLS-TLRVLRINDNKLNGTLSAIHFANL 455 (979)
Q Consensus 381 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~l~~~~~~~l 455 (979)
.+..+++| ++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++...+..+
T Consensus 162 ---------------------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l 220 (562)
T 3a79_B 162 ---------------------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220 (562)
T ss_dssp ---------------------TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSE
T ss_pred ---------------------chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhccccc
Confidence 11222222 5555555555 444444444432 111345555555554444445555
Q ss_pred CCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHH--hcCCCccE
Q 042359 456 TKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL--KSASQLKF 533 (979)
Q Consensus 456 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~--~~~~~L~~ 533 (979)
++|+.+++++|...... .......+..+++|+.++++++.+.+....... ...++|++
T Consensus 221 ~~L~~L~l~~n~~~~~~--------------------l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 221 GHLQLSNIKLNDENCQR--------------------LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EEEEEEEEECCSTTHHH--------------------HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred ceEEEecccccccccch--------------------HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 55555555554311000 000112234445555555555544332111110 01235556
Q ss_pred EEcccCcCCCCCCC-cccc--cCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccC
Q 042359 534 LDLGQNQIHGPIPN-LTEF--TGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLND 610 (979)
Q Consensus 534 L~Ls~n~l~~~~~~-l~~~--~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~ 610 (979)
|++++|.++|.+|. +... .+ +..|+.++++.+.+ .+|......+-...
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~------------------L~~L~~~~~~~~~~--~~p~~~~~~~~~~~--------- 331 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETA------------------LKSLMIEHVKNQVF--LFSKEALYSVFAEM--------- 331 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCS------------------CCEEEEEEEEECCC--SSCHHHHHHHHHTC---------
T ss_pred EEEeccEeeccccchhhhccccc------------------chheehhhccccee--ecChhhhhhhhccC---------
Confidence 66666655554442 1000 11 11222222222222 22211110000112
Q ss_pred ccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccc--c
Q 042359 611 NYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG--N 688 (979)
Q Consensus 611 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ 688 (979)
+|++|++++|.+... + ....+++|++|++++|++++.+|..+.++++|++|++++|++++ .
T Consensus 332 ---------------~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 394 (562)
T 3a79_B 332 ---------------NIKMLSISDTPFIHM-V-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394 (562)
T ss_dssp ---------------CCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH
T ss_pred ---------------cceEEEccCCCcccc-c-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc
Confidence 344444444444311 1 01344555555555555555555555555555555555555553 1
Q ss_pred CChhHHHhhhccceeeccCCcccCCCCc-cccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcc
Q 042359 689 IPTWIGERFSRMVVLILRSNKFHGPLPT-GLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPID 767 (979)
Q Consensus 689 ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 767 (979)
+|..+. .+++|+.|++++|++++.+|. .+..+++|+.|++++|++++.+|..+. +
T Consensus 395 ~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~--------------------- 450 (562)
T 3a79_B 395 VALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P--------------------- 450 (562)
T ss_dssp HHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T---------------------
T ss_pred chhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C---------------------
Confidence 222333 456666666666666654444 366778888999999988876665442 2
Q ss_pred cceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC-CCccCCCCEEE
Q 042359 768 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES-IGVMRSLESID 846 (979)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~~l~~L~~Ld 846 (979)
.|+.|||++|+++ .+|..+..+++|+.|+|++|+++ .+|.. ++.+++|+.|+
T Consensus 451 -------------------------~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 451 -------------------------KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp -------------------------TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred -------------------------cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence 2478999999998 78888889999999999999999 67766 99999999999
Q ss_pred CcCCcccccCC
Q 042359 847 FSANQLSGEIP 857 (979)
Q Consensus 847 Ls~N~l~~~ip 857 (979)
|++|++++..|
T Consensus 504 l~~N~~~c~c~ 514 (562)
T 3a79_B 504 LHDNPWDCTCP 514 (562)
T ss_dssp CCSCCBCCCHH
T ss_pred ecCCCcCCCcc
Confidence 99999998655
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-38 Score=364.20 Aligned_cols=402 Identities=24% Similarity=0.314 Sum_probs=167.3
Q ss_pred CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCe
Q 042359 279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358 (979)
Q Consensus 279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~ 358 (979)
.+.|++|++++|.+ +.+|..++++++|++|++++|.+.|.+ |..++++++|+.+++..|. ..++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~l~l~~c~------------~~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNA-PPGNGEQREMAVSRLRDCL------------DRQAHE 75 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTS-CTTSCCCHHHHHHHHHHHH------------HHTCSE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccC-Ccccccchhcchhhhhhhh------------ccCCCE
Confidence 45677777777777 566766777777777777777766665 6666666666665555541 024455
Q ss_pred eeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEc
Q 042359 359 LNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRI 438 (979)
Q Consensus 359 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 438 (979)
|++++|.+++. |. .+.+|++|++++|.+++ +|.. +++|++|++++|.+++. |.. .++|++|++
T Consensus 76 L~l~~~~l~~l-p~--------~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L 138 (454)
T 1jl5_A 76 LELNNLGLSSL-PE--------LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGV 138 (454)
T ss_dssp EECTTSCCSCC-CS--------CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEEC
T ss_pred EEecCCccccC-CC--------CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEEC
Confidence 55555554431 11 11224444444444443 2221 23444444444444431 110 134444444
Q ss_pred CCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCC
Q 042359 439 NDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD 518 (979)
Q Consensus 439 ~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~ 518 (979)
++|++++ +| .+..+++|++|++++|++.+
T Consensus 139 ~~n~l~~-lp--------------------------------------------------~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 139 SNNQLEK-LP--------------------------------------------------ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp CSSCCSS-CC--------------------------------------------------CCTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCC-Cc--------------------------------------------------ccCCCCCCCEEECCCCcCcc
Confidence 4444432 33 13344444444444444443
Q ss_pred CCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhccc
Q 042359 519 IFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRIN 598 (979)
Q Consensus 519 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 598 (979)
. |. ..++|++|++++|.+++ +|.+..+++|+.|++++|.+++ +|..+++|++|++++|.+. .+|. ++
T Consensus 168 l-p~----~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-----~~ 234 (454)
T 1jl5_A 168 L-PD----LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-----LQ 234 (454)
T ss_dssp C-CC----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-----CT
T ss_pred c-CC----CcccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-----cC
Confidence 2 21 12356666666666665 3455555555555555555554 3333345555555555554 2331 23
Q ss_pred CCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEE
Q 042359 599 ETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESL 678 (979)
Q Consensus 599 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 678 (979)
.+++|+.|++++|++.+ +|.. .++|++|++++|++++ +|.. .++|++|
T Consensus 235 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---------------------------~~~L~~L 282 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---------------------------PQSLTFL 282 (454)
T ss_dssp TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---------------------------CTTCCEE
T ss_pred CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---------------------------cCcCCEE
Confidence 34555555555555443 2221 2344444444444442 3322 2444455
Q ss_pred eccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCC-CCccEEEccCCccccccCcchhhcccCccccccccc
Q 042359 679 DVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDL-AFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRS 757 (979)
Q Consensus 679 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~ 757 (979)
++++|++++ +|. ..++|+.|++++|++++ ++ .+ ++|+.|++++|++++ +|..+ +
T Consensus 283 ~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~~---~----------- 337 (454)
T 1jl5_A 283 DVSENIFSG-LSE----LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPALP---P----------- 337 (454)
T ss_dssp ECCSSCCSE-ESC----CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCCC---T-----------
T ss_pred ECcCCccCc-ccC----cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccccC---C-----------
Confidence 555554443 111 01344555555555543 11 12 356666666666653 44321 1
Q ss_pred ccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCccee--ccCCC
Q 042359 758 VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTG--RIPES 835 (979)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~ 835 (979)
.|+.||+++|+++ .+|. .+++|+.|++++|++++ .+|.+
T Consensus 338 -----------------------------------~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 338 -----------------------------------RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp -----------------------------------TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred -----------------------------------cCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 2256666666666 3554 35666666666666666 55555
Q ss_pred CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc--cCCC
Q 042359 836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG--KIPS 882 (979)
Q Consensus 836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~ip~ 882 (979)
++.+ +.|++.|.+|.. +++|++||+++|+++| .||.
T Consensus 379 l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 379 VEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp CCEE--------ECCC---------------------------------
T ss_pred HHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 4432 345555555553 3566667777777765 5554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-37 Score=360.75 Aligned_cols=381 Identities=21% Similarity=0.225 Sum_probs=239.3
Q ss_pred CCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEe
Q 042359 407 KNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALG 486 (979)
Q Consensus 407 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 486 (979)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|++++|.+.......+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45555555555555555555555555566666555555455444555555555555555555443333333333444444
Q ss_pred cccccCCCCCChh--hhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCC-CcccccCCcEEEeeccc
Q 042359 487 LRNCYVGSRFPLW--LYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNN 563 (979)
Q Consensus 487 l~~~~~~~~~p~~--l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~ 563 (979)
+++|.+.+..|.. +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+..+ .+..+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~----------- 178 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ----------- 178 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT-----------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc-----------
Confidence 4444433322222 55556666666666666666555544555666666666666555444 222111
Q ss_pred CCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCc
Q 042359 564 MSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPY 643 (979)
Q Consensus 564 l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 643 (979)
..+++.|++++|.+.+..+..+.. .....+..+++|++|++++|++++..|.
T Consensus 179 --------~~~L~~L~l~~n~l~~~~~~~~~~--------------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 179 --------GKHFTLLRLSSITLQDMNEYWLGW--------------------EKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp --------TCEEEEEECTTCBCTTCSTTCTTH--------------------HHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred --------cccccccccccCcccccchhhccc--------------------cccccccccceeeeEecCCCcccccchh
Confidence 123344444444443322211100 0001122344555555555555555444
Q ss_pred ccCCC---CCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHH-HhhhccceeeccCCcccCCCCcccc
Q 042359 644 SMGSL---TSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG-ERFSRMVVLILRSNKFHGPLPTGLC 719 (979)
Q Consensus 644 ~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~ 719 (979)
.+... ++|+.|++++|...+.... .+.+.+..+..+. ...++|+.|++++|++++..|..+.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred hhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence 43322 5566666666655432110 1111111111111 0246788888888888888888899
Q ss_pred CCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEec
Q 042359 720 DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDI 799 (979)
Q Consensus 720 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdL 799 (979)
.+++|+.|++++|++++..|..+.+++.| +.|+|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L 330 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHL----------------------------------------------LKLNL 330 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------------CEEEC
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccC----------------------------------------------CEEEC
Confidence 99999999999999998888888776666 88999
Q ss_pred ccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359 800 SRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK 879 (979)
Q Consensus 800 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 879 (979)
++|++++..|..++++++|++|+|++|++++..|..|+.+++|++|||++|++++..+..++.+++|++|++++|+++|.
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 99999988899999999999999999999999999999999999999999999987777889999999999999999999
Q ss_pred CCCCccC
Q 042359 880 IPSSTQL 886 (979)
Q Consensus 880 ip~~~~~ 886 (979)
+|....+
T Consensus 411 ~~~~~~l 417 (455)
T 3v47_A 411 CPRIDYL 417 (455)
T ss_dssp TTTTHHH
T ss_pred CCcchHH
Confidence 9975444
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-38 Score=347.55 Aligned_cols=129 Identities=39% Similarity=0.659 Sum_probs=111.9
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceeccCCC--CcEEEEECCCCCCCCchhhHHHhhcccccc-
Q 042359 39 GCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCA--WAGVFCDNIT--GHVLHLDLRNPFNYHKESEYEAIRRTALVG- 113 (979)
Q Consensus 39 ~c~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~- 113 (979)
.|.++|++||++||+++.+|. .+++|..+.+||. |.||+|+... ++|++|+|++ +.+.|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~---------------~~l~~~ 65 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG---------------LNLPKP 65 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC---------------CCCSSC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC---------------CCccCC
Confidence 599999999999999998876 7899988889998 9999998654 8999999998 47888
Q ss_pred -cccccccCCCCCCEEeCCC-CCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCcc
Q 042359 114 -KINPSLLDLKHLSYLDLSF-NDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL 184 (979)
Q Consensus 114 -~~~~~l~~l~~L~~L~Ls~-n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i 184 (979)
.+|+.+.++++|++|++++ |.+.+. +|..|+++++|++|++++|.+++.+|..++++++|++|++++|.+
T Consensus 66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 66 YPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp EECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc
Confidence 8889999999999999995 888875 788899999999999999999888888888888888877777654
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-38 Score=364.47 Aligned_cols=396 Identities=21% Similarity=0.276 Sum_probs=256.8
Q ss_pred CcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEcc
Q 042359 385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVD 464 (979)
Q Consensus 385 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 464 (979)
|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++|+.+++.+|.. .+++.|+++
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~L~l~ 79 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHELELN 79 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSEEECT
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCEEEec
Confidence 77777777777 67777788888888888888888888888777777653333222210 233444444
Q ss_pred CCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCC
Q 042359 465 GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGP 544 (979)
Q Consensus 465 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 544 (979)
+|.++.... -+++|+.|++++|.+.+ +|.. .++|++|++++|++.+... ..++|++|++++|.+++
T Consensus 80 ~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 80 NLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSS-
T ss_pred CCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-----CCCCCCEEECcCCCCCC-
Confidence 444333211 12345555555555544 4432 3678888888888776432 12578889999888887
Q ss_pred CCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCC
Q 042359 545 IPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSY 624 (979)
Q Consensus 545 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l 624 (979)
+|.+..+++|++|++++|++++ +|..+.+|++|++++|.+++ +|. ++.+++|+.|++++|++.+ +|...
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~~-----~~~l~~L~~L~l~~N~l~~-l~~~~--- 214 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LPE-----LQNLPFLTAIYADNNSLKK-LPDLP--- 214 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CCC-----CTTCTTCCEEECCSSCCSS-CCCCC---
T ss_pred CcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Ccc-----ccCCCCCCEEECCCCcCCc-CCCCc---
Confidence 5678888889999999988886 56667799999999999987 442 4668999999999999986 45432
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceee
Q 042359 625 QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLI 704 (979)
Q Consensus 625 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~ 704 (979)
++|++|++++|+++ .+| .++.+++|++|++++|++++ +|.. .++|++|++++|++++ +|.. .++|+.|+
T Consensus 215 ~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ 283 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL----PQSLTFLD 283 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC----CTTCCEEE
T ss_pred CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc----cCcCCEEE
Confidence 58999999999998 677 48899999999999999985 5542 4789999999999985 7753 47899999
Q ss_pred ccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCcc
Q 042359 705 LRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEM 784 (979)
Q Consensus 705 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (979)
+++|++++. |.. .++|+.|++++|++++ +|. +
T Consensus 284 ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~----~--------------------------------------- 315 (454)
T 1jl5_A 284 VSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCD----L--------------------------------------- 315 (454)
T ss_dssp CCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECC----C---------------------------------------
T ss_pred CcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccC----C---------------------------------------
Confidence 999999862 211 2689999999998874 221 1
Q ss_pred chhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc--cCCCCCCC
Q 042359 785 VDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG--EIPESMSS 862 (979)
Q Consensus 785 ~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~--~ip~~l~~ 862 (979)
...|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|++||+++|++++ .+|.+++.
T Consensus 316 ------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 316 ------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp ------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred ------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 1235889999999996 7765 588999999999999 6777 47899999999999998 78876653
Q ss_pred CCCCCEEEccCCcccccCCCCccCCCccccccCCCCCCC
Q 042359 863 LTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCG 901 (979)
Q Consensus 863 l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lcg 901 (979)
++.|++.|.+|.. +..+...++++|.+.|
T Consensus 382 --------L~~n~~~~~i~~~--~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 --------LRMNSHLAEVPEL--PQNLKQLHVETNPLRE 410 (454)
T ss_dssp --------EECCC--------------------------
T ss_pred --------hhhcccccccccc--cCcCCEEECCCCcCCc
Confidence 4568889999874 4566667788887765
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.4e-36 Score=348.15 Aligned_cols=396 Identities=17% Similarity=0.162 Sum_probs=272.2
Q ss_pred CEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccC
Q 042359 250 TVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLT 329 (979)
Q Consensus 250 ~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~ 329 (979)
+.++.+++.++. +|. + .++|++|++++|.+++..|..+.++++|++|++++|.+.+.+++..|.+++
T Consensus 13 ~~~~c~~~~l~~----------lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 13 YNAICINRGLHQ----------VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79 (455)
T ss_dssp TEEECCSSCCSS----------CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred cccCcCCCCccc----------CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccc
Confidence 345566666653 444 2 267888888888888777888888888888888888887677677788888
Q ss_pred ccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCC
Q 042359 330 SISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI 409 (979)
Q Consensus 330 ~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 409 (979)
+|++|++++| .+.+..|..+..+++|++|++++|.+.+..+. . ..+..+++|
T Consensus 80 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~-----------------------~~~~~l~~L 131 (455)
T 3v47_A 80 SLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLS----G-----------------------NFFKPLTSL 131 (455)
T ss_dssp TCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHH----S-----------------------STTTTCTTC
T ss_pred cCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccC----c-----------------------ccccCcccC
Confidence 8888888888 77777788888888888888887777654433 1 124445555
Q ss_pred cEEeccCCcCcccCccc-ccCCCCCCEEEcCCCcCccccChhhhcCC--CCCcEEEccCCcccccccCCCCCcccccEEe
Q 042359 410 VTLDFANNSIVGLIPES-LGQLSTLRVLRINDNKLNGTLSAIHFANL--TKLSWFRVDGNKLTLGVKHDWIPPFQLVALG 486 (979)
Q Consensus 410 ~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~l~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 486 (979)
++|++++|.+++..|.. +..+++|++|++++|++.+..+. .+..+ .+|+.+++++|.+.......+..
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-------- 202 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGW-------- 202 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhhccc--------
Confidence 55555555555554443 45555555555555555433222 23322 34444444444433221110000
Q ss_pred cccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhc--CCCccEEEcccCcCCCCCCCcccccCCcEEEeecccC
Q 042359 487 LRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKS--ASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM 564 (979)
Q Consensus 487 l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l 564 (979)
.....+..+++|++|++++|.+.+..|..+... .++|+.|++++|...+.......
T Consensus 203 --------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------- 260 (455)
T 3v47_A 203 --------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN-------------- 260 (455)
T ss_dssp --------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS--------------
T ss_pred --------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh--------------
Confidence 000112345677788888888777766665443 25677777777765543221101
Q ss_pred CCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcc
Q 042359 565 SGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYS 644 (979)
Q Consensus 565 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 644 (979)
+.+..+..+.. ...++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..
T Consensus 261 --------------------~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 261 --------------------FKDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp --------------------SCCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred --------------------hccCccccccc--ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence 11111111100 12467888888888888888888899999999999999999888888
Q ss_pred cCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCc
Q 042359 645 MGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFL 724 (979)
Q Consensus 645 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 724 (979)
|..+++|++|++++|++++..|..+.++++|++|++++|++++..|.++. .+++|++|++++|++++..+..+..+++|
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcc
Confidence 99999999999999999888888899999999999999999887787776 78999999999999997666778899999
Q ss_pred cEEEccCCccccccCc
Q 042359 725 QILDIADNNLSGAIPN 740 (979)
Q Consensus 725 ~~L~Ls~n~l~~~~p~ 740 (979)
+.|++++|++++..|.
T Consensus 398 ~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 398 QKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred cEEEccCCCcccCCCc
Confidence 9999999999988873
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-35 Score=336.80 Aligned_cols=196 Identities=20% Similarity=0.171 Sum_probs=121.1
Q ss_pred ccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCC
Q 042359 109 TALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVD 188 (979)
Q Consensus 109 ~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~ 188 (979)
....+..+.+++++++|++|++++|.+++ +| .++.+++|++|++++|++++. | ++.+++|++|++++|.+..++
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC
T ss_pred cCcCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee
Confidence 34455556678889999999999999987 45 588899999999999999864 4 888899999999998877653
Q ss_pred ccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcc
Q 042359 189 NFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268 (979)
Q Consensus 189 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 268 (979)
++++++|++|++++|.+++.+ +..+++|++|++++|+++++ .
T Consensus 102 ----~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l---~-------------------------- 143 (457)
T 3bz5_A 102 ----VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI---D-------------------------- 143 (457)
T ss_dssp ----CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCC---C--------------------------
T ss_pred ----cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcccee---c--------------------------
Confidence 456666666666666655431 34444444444444444443 1
Q ss_pred cccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcc
Q 042359 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPR 348 (979)
Q Consensus 269 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~ 348 (979)
++.+++|++|++++|...+.+ .+..+++|++|++++|.+++ + + ++.+++|++|++++| .+++.
T Consensus 144 -------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l-~--l~~l~~L~~L~l~~N-~l~~~--- 206 (457)
T 3bz5_A 144 -------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L-D--VSQNKLLNRLNCDTN-NITKL--- 206 (457)
T ss_dssp -------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C-C--CTTCTTCCEEECCSS-CCSCC---
T ss_pred -------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e-c--cccCCCCCEEECcCC-cCCee---
Confidence 344455555555555333333 24455555555555555553 3 2 555566666666666 44432
Q ss_pred cccCCCCCCeeeccCcc
Q 042359 349 SMASLCNLKSLNLRGVH 365 (979)
Q Consensus 349 ~l~~l~~L~~L~L~~n~ 365 (979)
.+..+++|+.|++++|+
T Consensus 207 ~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CCTTCTTCSEEECCSSC
T ss_pred ccccCCCCCEEECcCCc
Confidence 24444444444444443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-34 Score=330.89 Aligned_cols=350 Identities=23% Similarity=0.247 Sum_probs=222.7
Q ss_pred CcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEcc
Q 042359 385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVD 464 (979)
Q Consensus 385 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 464 (979)
|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|++++ ++ +.++++|++|+++
T Consensus 44 L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 44 LTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCD 114 (457)
T ss_dssp CCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECC
T ss_pred CCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECC
Confidence 55555555555543 2 455555555555555555543 2 4555555555555555543 22 4455555555555
Q ss_pred CCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCC
Q 042359 465 GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGP 544 (979)
Q Consensus 465 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 544 (979)
+|.++. +| +..+++|++|++++|++.+. + +..+++|++|++++|...+.
T Consensus 115 ~N~l~~-------------------------l~--~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 115 TNKLTK-------------------------LD--VSQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp SSCCSC-------------------------CC--CTTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCSCCCC
T ss_pred CCcCCe-------------------------ec--CCCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCCcccc
Confidence 554442 12 44556666666666666654 2 23455666666666654444
Q ss_pred CCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCC
Q 042359 545 IPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSY 624 (979)
Q Consensus 545 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l 624 (979)
+ .+..+++|+.|++++|.+++.....+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| +..+
T Consensus 164 ~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l 232 (457)
T 3bz5_A 164 L-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-ID--VTPL 232 (457)
T ss_dssp C-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-CC--CTTC
T ss_pred c-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-cC--cccc
Confidence 4 244555566666666655553323345666666666666553 13446667777777777665 44 5666
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceee
Q 042359 625 QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLI 704 (979)
Q Consensus 625 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~ 704 (979)
++|++|++++|++++. | ++.+++|+.|++++| +|+.|++++|++.+.+|. . .+++|+.|+
T Consensus 233 ~~L~~L~l~~N~l~~~-~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~ 292 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTEL-D--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA--E-GCRKIKELD 292 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--T-TCTTCCCCC
T ss_pred CCCCEEEeeCCcCCCc-C--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--c-ccccCCEEE
Confidence 6777777777776653 2 344566666666554 456778888888877773 2 578888888
Q ss_pred ccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCcc
Q 042359 705 LRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEM 784 (979)
Q Consensus 705 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (979)
+++|.+.+.+|. ..+.|+.|++++|.
T Consensus 293 Ls~n~~l~~l~~---~~~~L~~L~l~~~~--------------------------------------------------- 318 (457)
T 3bz5_A 293 VTHNTQLYLLDC---QAAGITELDLSQNP--------------------------------------------------- 318 (457)
T ss_dssp CTTCTTCCEEEC---TTCCCSCCCCTTCT---------------------------------------------------
T ss_pred CCCCcccceecc---CCCcceEechhhcc---------------------------------------------------
Confidence 888887777764 33455555565541
Q ss_pred chhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCC
Q 042359 785 VDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT 864 (979)
Q Consensus 785 ~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 864 (979)
.|+.|++++|++++ +| ++++++|+.|++++|++++ ++.|+.|++++|+++|. ..+.
T Consensus 319 --------~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~ 374 (457)
T 3bz5_A 319 --------KLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTI 374 (457)
T ss_dssp --------TCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEE
T ss_pred --------cCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceee
Confidence 23789999999997 43 8999999999999999996 24677788999999987 3456
Q ss_pred CCCEEEccCCcccccCCCC
Q 042359 865 FLNHLNLSNNNLTGKIPSS 883 (979)
Q Consensus 865 ~L~~L~ls~N~l~g~ip~~ 883 (979)
.|..+|+++|+++|.||..
T Consensus 375 ~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 375 TMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ECCCBCCBTTBEEEECCTT
T ss_pred ecCccccccCcEEEEcChh
Confidence 6788999999999999964
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.4e-35 Score=318.04 Aligned_cols=258 Identities=31% Similarity=0.563 Sum_probs=232.8
Q ss_pred CcccEEeccCccccc--cCCccccCCCCCCEEEccC-CcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCE
Q 042359 601 KSLNALQLNDNYLNG--ELPDCWMSYQNLKTLKLSN-NKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALES 677 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 677 (979)
..++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|+.+++|++|++++|++++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467788888888887 7888888888899999984 8888888888888899999999999998888888889999999
Q ss_pred EeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCC-CccEEEccCCccccccCcchhhcccCcccccccc
Q 042359 678 LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLA-FLQILDIADNNLSGAIPNCINNLTGMVTACSFTR 756 (979)
Q Consensus 678 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~ 756 (979)
|++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ .|+.|++++|++++.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999888888887 689999999999999988999999998 999999999999999998887654 4
Q ss_pred cccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCC
Q 042359 757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI 836 (979)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 836 (979)
+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|. +
T Consensus 200 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~ 240 (313)
T 1ogq_A 200 --------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V 240 (313)
T ss_dssp --------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C
T ss_pred --------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c
Confidence 8899999999999999999999999999999999988877 8
Q ss_pred CccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCC-CCCCCCCCCCC
Q 042359 837 GVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPKNC 908 (979)
Q Consensus 837 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lcg~~~~~~c 908 (979)
..+++|++|||++|++++.+|..+..+++|++||+++|+++|.+|...++..+....+.+| .+||.|+. .|
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 8899999999999999999999999999999999999999999999988999999999999 69998876 56
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.6e-33 Score=319.70 Aligned_cols=347 Identities=27% Similarity=0.376 Sum_probs=243.8
Q ss_pred CCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccE
Q 042359 405 QFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA 484 (979)
Q Consensus 405 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 484 (979)
.+++++.|+++++.+.. +| .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+....
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~------------ 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADIT------------ 106 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG------------
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccCh------------
Confidence 45788899999988875 34 37788889999999998874 333 777888888888777665322
Q ss_pred EecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccC
Q 042359 485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM 564 (979)
Q Consensus 485 L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l 564 (979)
. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +.+..+++|+.|+++
T Consensus 107 -------------~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~---- 164 (466)
T 1o6v_A 107 -------------P-LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFG---- 164 (466)
T ss_dssp -------------G-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEE----
T ss_pred -------------h-hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecC----
Confidence 2 5556667777777776666543 35566777777777766542 334444444444443
Q ss_pred CCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcc
Q 042359 565 SGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYS 644 (979)
Q Consensus 565 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 644 (979)
|.+.+.. .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..|
T Consensus 165 ------------------~~~~~~~------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 165 ------------------NQVTDLK------PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp ------------------ESCCCCG------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred ------------------CcccCch------hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--
Confidence 1222111 134466677777777766643 236667777777777777775444
Q ss_pred cCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCc
Q 042359 645 MGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFL 724 (979)
Q Consensus 645 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 724 (979)
++.+++|++|++++|++++. ..+..+++|++|++++|.+.+..| +. .+++|+.|++++|.+++..+ +..+++|
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 56677777777777777653 356777788888888887775433 33 57788888888888876444 7788888
Q ss_pred cEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcc
Q 042359 725 QILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804 (979)
Q Consensus 725 ~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 804 (979)
+.|++++|++.+..| +..+++ |+.|+|++|++
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~----------------------------------------------L~~L~L~~n~l 321 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKN----------------------------------------------LTYLTLYFNNI 321 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTT----------------------------------------------CSEEECCSSCC
T ss_pred CeEEcCCCcccCchh--hcCCCC----------------------------------------------CCEEECcCCcC
Confidence 888888888875433 444433 47888999988
Q ss_pred cccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359 805 SGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK 879 (979)
Q Consensus 805 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 879 (979)
++..| ++.+++|+.|++++|++++. ..++.+++|+.|++++|++++.+| +..+++|+.|++++|++++.
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 87766 77889999999999999864 468888999999999999988877 78889999999999999873
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-32 Score=318.89 Aligned_cols=349 Identities=25% Similarity=0.350 Sum_probs=270.4
Q ss_pred CCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccE
Q 042359 429 QLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQF 508 (979)
Q Consensus 429 ~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~ 508 (979)
.+++++.|++.++.+. .++ .+..+++|+.|++++|.+.. ++. +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~-------------------------~~~-~~~l~~L~~ 94 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTD-------------------------ITP-LKNLTKLVD 94 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-------------------------CGG-GTTCTTCCE
T ss_pred HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCC-------------------------chh-hhccccCCE
Confidence 3567777888777775 344 25566666666666665542 222 566677777
Q ss_pred EEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEccccccccc
Q 042359 509 LYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS 588 (979)
Q Consensus 509 L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ 588 (979)
|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.. +++|++|++++|.+.+.
T Consensus 95 L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~---------------------l~~L~~L~l~~n~l~~~ 149 (466)
T 1o6v_A 95 ILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP-LKN---------------------LTNLNRLELSSNTISDI 149 (466)
T ss_dssp EECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTT---------------------CTTCSEEEEEEEEECCC
T ss_pred EECCCCccccChh---hcCCCCCCEEECCCCCCCCChH-HcC---------------------CCCCCEEECCCCccCCC
Confidence 7777777776655 4566777777777777665432 333 35666666666666542
Q ss_pred CChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccc
Q 042359 589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS 668 (979)
Q Consensus 589 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 668 (979)
+ .+..+++|+.|+++ |.+.+.. .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..|
T Consensus 150 -~-----~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 150 -S-----ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp -G-----GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--
T ss_pred -h-----hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--
Confidence 2 24568999999997 5555433 38899999999999999984 33 58899999999999999997666
Q ss_pred ccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccC
Q 042359 669 LKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGM 748 (979)
Q Consensus 669 l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l 748 (979)
+..+++|+.|++++|++.+ ++ .+. .+++|+.|++++|.+++..| +..+++|+.|++++|++++..| +..++.
T Consensus 217 ~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~- 288 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKD-IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA- 288 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTT-
T ss_pred ccccCCCCEEECCCCCccc-ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCc-
Confidence 7789999999999999984 44 344 68999999999999997655 8899999999999999986443 444444
Q ss_pred cccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcc
Q 042359 749 VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSF 828 (979)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 828 (979)
|+.|++++|++++..| ++.+++|+.|+|++|++
T Consensus 289 ---------------------------------------------L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 289 ---------------------------------------------LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp ---------------------------------------------CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred ---------------------------------------------cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence 4899999999997655 88999999999999999
Q ss_pred eeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCCCCCCCCC
Q 042359 829 TGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPL 904 (979)
Q Consensus 829 ~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lcg~~~ 904 (979)
++..| ++.+++|+.|++++|++++. ..+..+++|+.|++++|+++|.+| ...+..+....+.+|.+.+.|.
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCB
T ss_pred CCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCch
Confidence 98776 78999999999999999975 478999999999999999999888 5566777777788887766553
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=324.75 Aligned_cols=301 Identities=21% Similarity=0.177 Sum_probs=225.9
Q ss_pred CccEEEcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCcc---CCCCcEEEcccccccccCChhhhhcccCCCcccE
Q 042359 530 QLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLI---SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNA 605 (979)
Q Consensus 530 ~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~ 605 (979)
.+++|++++|.+++..+ .+..+++|+.|++++|.+.+..|.. +++|++|++++|.+++..+.. +..+++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~ 108 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTK 108 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCE
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCE
Confidence 45555555555554433 3444445555555555444433322 356666777776666443332 344778888
Q ss_pred EeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcc
Q 042359 606 LQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685 (979)
Q Consensus 606 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l 685 (979)
|++++|++.+..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+.++++|+.|++++|.+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 88888888877777788888888888888888877777888888888888888888876667788888888888888888
Q ss_pred cccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCC
Q 042359 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLP 765 (979)
Q Consensus 686 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 765 (979)
.+..+..+. .+++|+.|++++|.+.+.+|.......+|+.|++++|++++..+..+.+++.|
T Consensus 189 ~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----------------- 250 (477)
T 2id5_A 189 NAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL----------------- 250 (477)
T ss_dssp CEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-----------------
T ss_pred cEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc-----------------
Confidence 765554444 67888888888888777777777667788888888888874333445555444
Q ss_pred cccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEE
Q 042359 766 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESI 845 (979)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L 845 (979)
+.|||++|++++..+..+.++++|+.|+|++|++++..|..|..+++|+.|
T Consensus 251 -----------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 251 -----------------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp -----------------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred -----------------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence 889999999998888889999999999999999999999999999999999
Q ss_pred ECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359 846 DFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 846 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 881 (979)
||++|++++..+..|..+++|++|++++|++.+..+
T Consensus 302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred ECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 999999998777888999999999999999987644
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=309.88 Aligned_cols=310 Identities=22% Similarity=0.234 Sum_probs=232.5
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL 193 (979)
Q Consensus 114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l 193 (979)
.+|..+. +++++|+|++|.++++ .|..|..+++|++|+|++|.+++..|..|+++++|++|+|++|.+..++..
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--- 98 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG--- 98 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT---
T ss_pred cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc---
Confidence 3454443 5889999999999986 577899999999999999999988889999999999999999987766532
Q ss_pred cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCC
Q 042359 194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP 273 (979)
Q Consensus 194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p 273 (979)
.+..+++|++|++++|++.+..+..+..+++|++|++++|.++ +..|
T Consensus 99 ------------------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~ 145 (477)
T 2id5_A 99 ------------------------VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV---------YISH 145 (477)
T ss_dssp ------------------------SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC---------EECT
T ss_pred ------------------------cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc---------eeCh
Confidence 2345556666666666666666666777777777777777776 3345
Q ss_pred ccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCC
Q 042359 274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL 353 (979)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l 353 (979)
..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+ +++..+..+++|++|++++| ...+.++......
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~ 223 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHW-PYLDTMTPNCLYG 223 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECC-TTCCEECTTTTTT
T ss_pred hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCC-ccccccCcccccC
Confidence 566777777777777777776666667777777777777777764 33566777777777777777 5555555555555
Q ss_pred CCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCC
Q 042359 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTL 433 (979)
Q Consensus 354 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 433 (979)
.+|++|++++|.+....+. .+..++. |+.|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|
T Consensus 224 ~~L~~L~l~~n~l~~~~~~----~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYL----AVRHLVY-LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp CCCSEEEEESSCCCSCCHH----HHTTCTT-CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred ccccEEECcCCcccccCHH----HhcCccc-cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 6777788877777654333 3344444 8888888888877777778888888888888888888888888888888
Q ss_pred CEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccc
Q 042359 434 RVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTL 470 (979)
Q Consensus 434 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~ 470 (979)
++|++++|+++ .++...|..+++|+.|++++|++.+
T Consensus 299 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 299 RVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCccC
Confidence 88888888887 5666678888888888888888764
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.7e-31 Score=297.31 Aligned_cols=236 Identities=21% Similarity=0.251 Sum_probs=156.5
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 679 (979)
+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+..+++|+.|++++|.+++ +...++|+.|+
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~ 211 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD 211 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEE
T ss_pred CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEE
Confidence 34444444444444444444555555566666666655532 13445566666666666553 22334566666
Q ss_pred ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ 759 (979)
Q Consensus 680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 759 (979)
+++|.+.. +|.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+..++.|
T Consensus 212 l~~n~l~~-~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------- 274 (390)
T 3o6n_A 212 ASHNSINV-VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----------- 274 (390)
T ss_dssp CCSSCCCE-EECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------
T ss_pred CCCCeeee-cccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----------
Confidence 66666653 3332 235677777777777653 456777888888888888887777777666655
Q ss_pred ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359 760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839 (979)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 839 (979)
+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..++.+
T Consensus 275 -----------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l 317 (390)
T 3o6n_A 275 -----------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317 (390)
T ss_dssp -----------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -----------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence 788888888884 6777788899999999999998 677778889
Q ss_pred CCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCC-CCCC
Q 042359 840 RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCG 901 (979)
Q Consensus 840 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lcg 901 (979)
++|+.|+|++|+++.. | +..+++|++|++++|++++.... ..++.+....+.++ ..|+
T Consensus 318 ~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred CcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceec
Confidence 9999999999999854 3 67888999999999999874221 12333333344444 4454
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.9e-30 Score=293.06 Aligned_cols=290 Identities=21% Similarity=0.224 Sum_probs=155.3
Q ss_pred cCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCC
Q 042359 120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL 199 (979)
Q Consensus 120 ~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 199 (979)
..++++++|++++|.++.+ -+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+..++.. .+.++++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTC
T ss_pred cccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCC
Confidence 4578999999999998864 234578899999999999999977777899999999999999987766432 13445555
Q ss_pred CEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCC
Q 042359 200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL 279 (979)
Q Consensus 200 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l 279 (979)
++|++++|.+. .++...+..+++|++|++++|.++ +..|..+..+
T Consensus 120 ~~L~L~~n~l~--------------------------~l~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l 164 (390)
T 3o6n_A 120 TVLVLERNDLS--------------------------SLPRGIFHNTPKLTTLSMSNNNLE---------RIEDDTFQAT 164 (390)
T ss_dssp CEEECCSSCCC--------------------------CCCTTTTTTCTTCCEEECCSSCCC---------BCCTTTTSSC
T ss_pred CEEECCCCccC--------------------------cCCHHHhcCCCCCcEEECCCCccC---------ccChhhccCC
Confidence 55555555444 333333444444444444444443 2223334444
Q ss_pred CCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCee
Q 042359 280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSL 359 (979)
Q Consensus 280 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L 359 (979)
++|++|++++|.+++. .+..+++|++|++++|.+++ +...++|++|++++| .+... |. ...++|+.|
T Consensus 165 ~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n-~l~~~-~~--~~~~~L~~L 231 (390)
T 3o6n_A 165 TSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHN-SINVV-RG--PVNVELTIL 231 (390)
T ss_dssp TTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSS-CCCEE-EC--CCCSSCCEE
T ss_pred CCCCEEECCCCcCCcc---ccccccccceeecccccccc------cCCCCcceEEECCCC-eeeec-cc--cccccccEE
Confidence 4444444444444332 12334444444444444331 112234444444444 33322 11 112344444
Q ss_pred eccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcC
Q 042359 360 NLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIN 439 (979)
Q Consensus 360 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 439 (979)
++++|.+.+. . .+..++. |++|++++|.+++..|..+..+++|++|++++|++++. |..+..+++|++|+++
T Consensus 232 ~l~~n~l~~~--~----~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 232 KLQHNNLTDT--A----WLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLS 303 (390)
T ss_dssp ECCSSCCCCC--G----GGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECC
T ss_pred ECCCCCCccc--H----HHcCCCC-ccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECC
Confidence 4444444332 1 2222222 55555555555544455555555555555555555532 3334455555555555
Q ss_pred CCcCccccChhhhcCCCCCcEEEccCCccc
Q 042359 440 DNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469 (979)
Q Consensus 440 ~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~ 469 (979)
+|++. .++. .+..+++|+.|++++|.++
T Consensus 304 ~n~l~-~~~~-~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 304 HNHLL-HVER-NQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp SSCCC-CCGG-GHHHHTTCSEEECCSSCCC
T ss_pred CCcce-ecCc-cccccCcCCEEECCCCccc
Confidence 55554 3332 2444555555555555443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.7e-31 Score=311.81 Aligned_cols=238 Identities=21% Similarity=0.252 Sum_probs=174.9
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 679 (979)
+++|+.|++++|.+.+..|..+..+++|++|++++|.+++. + +..+++|+.|++++|.+++ +...++|+.|+
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ 217 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELD 217 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence 45555556666666555555666666677777777766643 2 3455667777777776664 23445677777
Q ss_pred ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ 759 (979)
Q Consensus 680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 759 (979)
+++|.+.. +|..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+.+|..+++++.|
T Consensus 218 ls~n~l~~-~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------- 280 (597)
T 3oja_B 218 ASHNSINV-VRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----------- 280 (597)
T ss_dssp CCSSCCCE-EECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------
T ss_pred ccCCcccc-ccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-----------
Confidence 77777763 33322 3577888888888876 3667888889999999999988888888776666
Q ss_pred ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359 760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839 (979)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 839 (979)
+.|+|++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+
T Consensus 281 -----------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 281 -----------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp -----------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -----------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 788999999985 6777888999999999999999 788889999
Q ss_pred CCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCC-CCCCCC
Q 042359 840 RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAP 903 (979)
Q Consensus 840 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lcg~~ 903 (979)
++|+.|||++|++++. | +..+++|++|++++|+++|..+. ..+..+....+.++ ..|+.+
T Consensus 324 ~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 324 DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 9999999999999864 3 67788999999999999986432 23455555566677 778754
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.3e-29 Score=281.52 Aligned_cols=308 Identities=22% Similarity=0.301 Sum_probs=232.1
Q ss_pred cccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCC
Q 042359 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS 197 (979)
Q Consensus 118 ~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~ 197 (979)
.+..+++|++|+++++.+.. +|. ++.+++|++|++++|.+++. |. +.++++|++|++++|.+..++ .+.+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~~---~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDIS---ALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG---GGTTCT
T ss_pred cchhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCch---HHcCCC
Confidence 34578889999999998886 343 78889999999999988854 33 888999999999999887764 377888
Q ss_pred CCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcccc
Q 042359 198 FLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ 277 (979)
Q Consensus 198 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~ 277 (979)
+|++|++++|.+.+... +..+++|++|++++|......+ .+..+++|++|++++|.+.. ++. +.
T Consensus 111 ~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~----------~~~-~~ 174 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD----------VTP-IA 174 (347)
T ss_dssp TCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC----------CGG-GG
T ss_pred cCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC----------chh-hc
Confidence 88899998888887543 6788888888888886554443 37888888888888888763 222 67
Q ss_pred CCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCC
Q 042359 278 NLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLK 357 (979)
Q Consensus 278 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~ 357 (979)
.+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|++|++++| .+.+..+ +..+++|+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n-~l~~~~~--~~~l~~L~ 246 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNN-KITDLSP--LANLSQLT 246 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCC
T ss_pred cCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCC-ccCCCcc--hhcCCCCC
Confidence 78888888888888875433 778888888888888887432 2778888888888888 6765444 77888888
Q ss_pred eeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEE
Q 042359 358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLR 437 (979)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 437 (979)
+|++++|.+.+. + .+..++. |++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 247 ~L~l~~n~l~~~-~-----~~~~l~~-L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 247 WLEIGTNQISDI-N-----AVKDLTK-LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp EEECCSSCCCCC-G-----GGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred EEECCCCccCCC-h-----hHhcCCC-cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 888888877653 2 2334444 88888888877764 3577778888888888888877777778888888888
Q ss_pred cCCCcCccccChhhhcCCCCCcEEEccCCccc
Q 042359 438 INDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469 (979)
Q Consensus 438 L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~ 469 (979)
+++|++++..+ +..+++|+.|++++|.++
T Consensus 318 L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 318 LSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred ccCCccccccC---hhhhhccceeehhhhccc
Confidence 88888774433 667778888888777664
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.3e-30 Score=307.18 Aligned_cols=243 Identities=22% Similarity=0.233 Sum_probs=149.4
Q ss_pred CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCC
Q 042359 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE 200 (979)
Q Consensus 121 ~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~ 200 (979)
.+.+++.|++++|.+..+ .+..++.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+..++.
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------- 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP----------- 116 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----------
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----------
Confidence 467899999999988874 24567889999999999999988777788888888888888887655442
Q ss_pred EEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCC
Q 042359 201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLT 280 (979)
Q Consensus 201 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~ 280 (979)
..+..+++|++|++++|.++++++..++.+++|++|++++|.++ +..|..++.++
T Consensus 117 ----------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~l~ 171 (597)
T 3oja_B 117 ----------------HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE---------RIEDDTFQATT 171 (597)
T ss_dssp ----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------BCCTTTTTTCT
T ss_pred ----------------HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC---------CCChhhhhcCC
Confidence 12345556666666666666666555666667777777776665 33455566666
Q ss_pred CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeee
Q 042359 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN 360 (979)
Q Consensus 281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~ 360 (979)
+|++|++++|.+++.. +..+++|++|++++|.+++ +...++|+.|++++| .+....+.. .++
T Consensus 172 ~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n-~l~~~~~~~---~~~----- 233 (597)
T 3oja_B 172 SLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHN-SINVVRGPV---NVE----- 233 (597)
T ss_dssp TCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSS-CCCEEECSC---CSC-----
T ss_pred cCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc------ccCCchhheeeccCC-ccccccccc---CCC-----
Confidence 6666666666665431 3445666666666665542 122345555555555 333221111 123
Q ss_pred ccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCC
Q 042359 361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIND 440 (979)
Q Consensus 361 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 440 (979)
|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..|..+++|++|+|++
T Consensus 234 ------------------------L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 234 ------------------------LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp ------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred ------------------------CCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 44455555544432 3445555555555555555555555555555555555555
Q ss_pred CcCc
Q 042359 441 NKLN 444 (979)
Q Consensus 441 n~l~ 444 (979)
|++.
T Consensus 288 N~l~ 291 (597)
T 3oja_B 288 NRLV 291 (597)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5554
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5.7e-30 Score=284.46 Aligned_cols=302 Identities=24% Similarity=0.329 Sum_probs=190.2
Q ss_pred CCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCC-ccCCCCcEEEccc
Q 042359 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP-LISSNLVFLDLSN 582 (979)
Q Consensus 504 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~Ls~ 582 (979)
++|++|++++|.+..... +..+++|++|++++|.+++..+ +..+++|+.|++++|.++.... ..+++|++|++++
T Consensus 44 ~~L~~L~l~~~~i~~~~~---~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG---IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE 119 (347)
T ss_dssp TTCSEEECCSSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTT
T ss_pred ccccEEEEeCCccccchh---hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcC
Confidence 344444444444433211 2234444444444444443222 3344444444444444333210 1145666666666
Q ss_pred ccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccc
Q 042359 583 NLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS 662 (979)
Q Consensus 583 n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 662 (979)
|.+.+..+ +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 120 n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 120 DNISDISP------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp SCCCCCGG------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred CcccCchh------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 66654322 3456777777777776554443 36777788888888887764333 667778888888888777
Q ss_pred ccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcch
Q 042359 663 GNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI 742 (979)
Q Consensus 663 ~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 742 (979)
+..+ +..+++|+.|++++|.+.+..+ +. .+++|+.|++++|++++..+ +..+++|+.|++++|++++. ..+
T Consensus 191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 191 DISP--LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred cccc--ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence 5333 6777888888888887764333 33 57788888888887775433 77778888888888877642 223
Q ss_pred hhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEe
Q 042359 743 NNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLN 822 (979)
Q Consensus 743 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 822 (979)
..++ .|+.|++++|++++. ..+..+++|+.|+
T Consensus 262 ~~l~----------------------------------------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 262 KDLT----------------------------------------------KLKMLNVGSNQISDI--SVLNNLSQLNSLF 293 (347)
T ss_dssp TTCT----------------------------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred hcCC----------------------------------------------CcCEEEccCCccCCC--hhhcCCCCCCEEE
Confidence 3333 347788888888753 3477788888888
Q ss_pred CCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccc
Q 042359 823 FSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT 877 (979)
Q Consensus 823 Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 877 (979)
+++|++++..|..++.+++|+.|++++|++++..| +..+++|++||+++|+++
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888887777778888888888888888887666 777888888888888775
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.4e-30 Score=285.35 Aligned_cols=277 Identities=20% Similarity=0.221 Sum_probs=180.5
Q ss_pred CCCCHHHHHHHHHhhhcCC-CCCCCCCCC----CCCCCCccccceeccC--------CCCcEEEEECCCCCCCCchhhHH
Q 042359 38 VGCLGSEKEALLSFKRDLK-DPSNRLASW----SGNGDCCAWAGVFCDN--------ITGHVLHLDLRNPFNYHKESEYE 104 (979)
Q Consensus 38 ~~c~~~~~~~ll~~k~~~~-~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~~~ 104 (979)
.++..+|++||++||+++. ++.+.+.+| ....++|.|.|+.|+. ...+|+.|+|+++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---------- 91 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV---------- 91 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence 3466789999999999984 776777889 4567899999999952 3468888998883
Q ss_pred HhhcccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCcc
Q 042359 105 AIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL 184 (979)
Q Consensus 105 ~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i 184 (979)
.+. .+|+.++++++|++|+|++|.++. +|..++.+++|++|+|++|.++ .+|..++++++|++|++++|.+
T Consensus 92 -----~l~-~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 92 -----PLP-QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp -----CCS-SCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred -----Cch-hcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence 454 778888889999999999999883 7888889999999999999988 7788889999999999988654
Q ss_pred c-cCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCC
Q 042359 185 L-YVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263 (979)
Q Consensus 185 ~-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 263 (979)
. .++.. +.. . .....+..+++|++|++++|+++.+ +..+..+++|++|++++|.++.
T Consensus 163 ~~~~p~~--~~~------~-----------~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~-- 220 (328)
T 4fcg_A 163 LTELPEP--LAS------T-----------DASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA-- 220 (328)
T ss_dssp CCCCCSC--SEE------E-----------C-CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCC--
T ss_pred ccccChh--Hhh------c-----------cchhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCc--
Confidence 3 22221 110 0 0001122344445555555544422 2335555555555555555542
Q ss_pred CCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCc
Q 042359 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIE 343 (979)
Q Consensus 264 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~ 343 (979)
+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+ |..++++++|++|++++| .+.
T Consensus 221 --------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n-~~~ 290 (328)
T 4fcg_A 221 --------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGC-VNL 290 (328)
T ss_dssp --------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC-CTTGGGCTTCCEEECTTC-TTC
T ss_pred --------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc-chhhhcCCCCCEEeCCCC-Cch
Confidence 3444555555555555555555555555555555666666555555555 455555666666666665 555
Q ss_pred ccCcccccCCCCCCeeeccCcc
Q 042359 344 GRIPRSMASLCNLKSLNLRGVH 365 (979)
Q Consensus 344 ~~~~~~l~~l~~L~~L~L~~n~ 365 (979)
+.+|..+.++++|+.+++..+.
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGGG
T ss_pred hhccHHHhhccCceEEeCCHHH
Confidence 5566666666666666655543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.9e-33 Score=324.21 Aligned_cols=362 Identities=20% Similarity=0.144 Sum_probs=182.4
Q ss_pred CCCcEEeccCCcCcccCccc-ccCCCCCCEEEcCCCcCcccc---ChhhhcCCCCCcEEEccCCcccccccCCCCCcccc
Q 042359 407 KNIVTLDFANNSIVGLIPES-LGQLSTLRVLRINDNKLNGTL---SAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQL 482 (979)
Q Consensus 407 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~l---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 482 (979)
++|++|++++|+++...... +..+++|++|++++|++.+.. -...+..+++|+.|++++|.+.....
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--------- 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV--------- 73 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH---------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH---------
Confidence 45677777777766443322 556677777777777765321 01134455555555555555432110
Q ss_pred cEEecccccCCCCCChhhhCCC----CccEEEccCCCCCCCC----chHHHhcCCCccEEEcccCcCCCCCC-CcccccC
Q 042359 483 VALGLRNCYVGSRFPLWLYSQK----HLQFLYLVNSSISDIF----PIRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTG 553 (979)
Q Consensus 483 ~~L~l~~~~~~~~~p~~l~~~~----~L~~L~Ls~n~l~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~-~l~~~~~ 553 (979)
......++ +|++|++++|.+.+.. +. .+..+++|++|++++|.+.+..+ .+..
T Consensus 74 --------------~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--- 135 (461)
T 1z7x_W 74 --------------HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCE--- 135 (461)
T ss_dssp --------------HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHH---
T ss_pred --------------HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHH---
Confidence 00111122 4555555555554321 11 12334444444444444432111 0000
Q ss_pred CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCcccc-----CCCCCC
Q 042359 554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWM-----SYQNLK 628 (979)
Q Consensus 554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~ 628 (979)
......++|++|++++|.+++.....+...+..+++|++|++++|.+.+..+..+. ..++|+
T Consensus 136 -------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 136 -------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp -------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred -------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 00001235666666666666554444444445566666666666666543332222 234666
Q ss_pred EEEccCCccccc----CCcccCCCCCccEEEcCCccccccc-----cccccCCCCCCEEeccCCccccc----CChhHHH
Q 042359 629 TLKLSNNKFTGN----LPYSMGSLTSLVWLHLGENRLSGNI-----LVSLKNCTALESLDVGENEFVGN----IPTWIGE 695 (979)
Q Consensus 629 ~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~----ip~~~~~ 695 (979)
+|++++|.+++. ++..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++. ++..+.
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~- 281 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR- 281 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-
Confidence 666666666542 3445555666666666666665432 22223456666666666666543 344443
Q ss_pred hhhccceeeccCCcccCCCCcccc-----CCCCccEEEccCCccccc----cCcchhhcccCcccccccccccccCCCCc
Q 042359 696 RFSRMVVLILRSNKFHGPLPTGLC-----DLAFLQILDIADNNLSGA----IPNCINNLTGMVTACSFTRSVQQYLPLPI 766 (979)
Q Consensus 696 ~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 766 (979)
.+++|+.|++++|.+++..+..+. ..++|+.|++++|.+++. +|..+..++
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-------------------- 341 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-------------------- 341 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS--------------------
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC--------------------
Confidence 455666666666665543222222 124566666666665543 222222222
Q ss_pred ccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccC-----CCCCCEEeCCCCccee----ccCCCCC
Q 042359 767 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN-----LKALQSLNFSYNSFTG----RIPESIG 837 (979)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~~~ 837 (979)
.|+.|||++|++++..+..+.. .++|+.|+|++|++++ .+|..+.
T Consensus 342 --------------------------~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 342 --------------------------FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395 (461)
T ss_dssp --------------------------SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred --------------------------CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence 2356666666665544443332 4566666666666664 5566666
Q ss_pred ccCCCCEEECcCCccccc
Q 042359 838 VMRSLESIDFSANQLSGE 855 (979)
Q Consensus 838 ~l~~L~~LdLs~N~l~~~ 855 (979)
.+++|++|||++|++++.
T Consensus 396 ~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 396 ANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HCCCCCEEECCSSSCCHH
T ss_pred hCCCccEEECCCCCCCHH
Confidence 666666666666666543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.4e-28 Score=267.85 Aligned_cols=266 Identities=17% Similarity=0.237 Sum_probs=206.6
Q ss_pred CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEcc
Q 042359 554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS 633 (979)
Q Consensus 554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 633 (979)
++.++++++.+.......++++++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhh----hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 344444444444333333567888888888887655543 3458889999999998888778888888899999999
Q ss_pred CCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccc--cCChhHHHhhhccceeeccCCccc
Q 042359 634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG--NIPTWIGERFSRMVVLILRSNKFH 711 (979)
Q Consensus 634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~n~l~ 711 (979)
+|+++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.+.. ..+..+. .+++|+.|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCccc
Confidence 99888 5666554 788999999999888777788888999999999988853 4555555 6888899999988887
Q ss_pred CCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhc
Q 042359 712 GPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL 791 (979)
Q Consensus 712 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (979)
. +|..+. ++|+.|++++|++++..|..+..++.|
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------------------- 218 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL------------------------------------------- 218 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC-------------------------------------------
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC-------------------------------------------
Confidence 4 555543 788889999998887777777766655
Q ss_pred cceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCC------CCC
Q 042359 792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSS------LTF 865 (979)
Q Consensus 792 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~------l~~ 865 (979)
+.|+|++|++++..|..++.+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..+.. .++
T Consensus 219 ---~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 219 ---AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp ---CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred ---CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 78888888888877778888888999999999888 78888888888999999999888776666643 367
Q ss_pred CCEEEccCCccc
Q 042359 866 LNHLNLSNNNLT 877 (979)
Q Consensus 866 L~~L~ls~N~l~ 877 (979)
|+.+++++|++.
T Consensus 295 l~~l~l~~N~~~ 306 (330)
T 1xku_A 295 YSGVSLFSNPVQ 306 (330)
T ss_dssp CSEEECCSSSSC
T ss_pred ccceEeecCccc
Confidence 888888888886
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.8e-28 Score=270.16 Aligned_cols=243 Identities=20% Similarity=0.237 Sum_probs=135.3
Q ss_pred CCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCcc
Q 042359 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLV 652 (979)
Q Consensus 573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 652 (979)
++|++|++++|.+++..|.. ++.+++|++|++++|++. .+|..+. ++|++|++++|++++..+..|..+++|+
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKA----FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTCCEEECCSSCCCEECGGG----STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred CCCcEEECCCCccCccCHhH----hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 34455555555554433332 233556666666666655 3443333 5566666666666544444456666666
Q ss_pred EEEcCCcccc--ccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEcc
Q 042359 653 WLHLGENRLS--GNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIA 730 (979)
Q Consensus 653 ~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 730 (979)
+|++++|.++ +..+..+..+ +|++|++++|+++ .+|..+. ++|+.|++++|++++..|..+..+++|+.|+++
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred EEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 6666666664 2445555555 6666666666665 3554432 456666666666665555566666666666666
Q ss_pred CCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccc
Q 042359 731 DNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 810 (979)
Q Consensus 731 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~ 810 (979)
+|++++..|..+..+++| +.|+|++|+++ .+|.
T Consensus 226 ~N~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 226 HNQIRMIENGSLSFLPTL----------------------------------------------RELHLDNNKLS-RVPA 258 (332)
T ss_dssp SSCCCCCCTTGGGGCTTC----------------------------------------------CEEECCSSCCC-BCCT
T ss_pred CCcCCcCChhHhhCCCCC----------------------------------------------CEEECCCCcCe-ecCh
Confidence 666655544444444433 56666666666 5666
Q ss_pred cccCCCCCCEEeCCCCcceeccCCCCCcc------CCCCEEECcCCccc--ccCCCCCCCCCCCCEEEccCC
Q 042359 811 EVTNLKALQSLNFSYNSFTGRIPESIGVM------RSLESIDFSANQLS--GEIPESMSSLTFLNHLNLSNN 874 (979)
Q Consensus 811 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l------~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N 874 (979)
.++.+++|+.|++++|++++..+..|... .+|+.|++++|.+. +..|..+..++.|+.+++++|
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 66666666666666666665544444432 45666666666655 445555666666666666655
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.1e-31 Score=308.64 Aligned_cols=137 Identities=22% Similarity=0.210 Sum_probs=60.6
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCC----CCccccCCCCCCceEecCCCccccCCccccccCCC--
Q 042359 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG----MIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS-- 197 (979)
Q Consensus 124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~----~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~-- 197 (979)
+|++|||++|+++.......+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+.....+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 445555555555443222234455555555555555542 13344445555555555555543322222222222
Q ss_pred --CCCEEEccCccCCCCc--hhhhhcCCCCCccEEEccCCCCCCCChhhhc-----CCCCCCEEECCCCCCC
Q 042359 198 --FLEHLDLRSVNLSKAF--DWLMVTNKLPSLVELRLANCQLHHFSLLATA-----NFSSLTVLDLSDNQFD 260 (979)
Q Consensus 198 --~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~ 260 (979)
+|++|++++|.+.+.. .++..+..+++|++|++++|.+++.....+. ..++|++|++++|.++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 3445555444444321 2333444455555555555544433222211 1334555555555444
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.2e-28 Score=267.07 Aligned_cols=288 Identities=20% Similarity=0.252 Sum_probs=227.5
Q ss_pred CccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCccCCCCcEEEcccc
Q 042359 505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNN 583 (979)
Q Consensus 505 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n 583 (979)
+++.++++++.+..... .+ .+.+++|++++|.+++..+ .+..+ ++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~-~~---~~~l~~L~L~~n~i~~~~~~~~~~l---------------------~~L~~L~L~~n 86 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-DL---PPDTALLDLQNNKITEIKDGDFKNL---------------------KNLHTLILINN 86 (330)
T ss_dssp ETTEEECTTSCCCSCCC-SC---CTTCCEEECCSSCCCCBCTTTTTTC---------------------TTCCEEECCSS
T ss_pred CCeEEEecCCCccccCc-cC---CCCCeEEECCCCcCCEeChhhhccC---------------------CCCCEEECCCC
Confidence 56777777777665432 11 2456677777776665544 34333 56666777777
Q ss_pred cccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccc
Q 042359 584 LFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSG 663 (979)
Q Consensus 584 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 663 (979)
.+++..|..+ ..+++|++|++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~----~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 87 KISKISPGAF----APLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CCCCBCTTTT----TTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred cCCeeCHHHh----cCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 6666555443 45788999999999887 5565544 789999999999997777778899999999999999864
Q ss_pred --cccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcc
Q 042359 664 --NILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNC 741 (979)
Q Consensus 664 --~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 741 (979)
..+..+.++++|++|++++|.++ .+|..+. ++|+.|++++|++++..|..+..+++|+.|++++|++++..|..
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred cCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 67788899999999999999998 5776543 78999999999999888899999999999999999999877777
Q ss_pred hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEE
Q 042359 742 INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSL 821 (979)
Q Consensus 742 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 821 (979)
+..++.| +.|+|++|+++ .+|..+..+++|+.|
T Consensus 236 ~~~l~~L----------------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 236 LANTPHL----------------------------------------------RELHLNNNKLV-KVPGGLADHKYIQVV 268 (330)
T ss_dssp GGGSTTC----------------------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred ccCCCCC----------------------------------------------CEEECCCCcCc-cCChhhccCCCcCEE
Confidence 7766655 89999999999 899999999999999
Q ss_pred eCCCCcceeccCCCCCc------cCCCCEEECcCCcccc--cCCCCCCCCCCCCEEEccCCc
Q 042359 822 NFSYNSFTGRIPESIGV------MRSLESIDFSANQLSG--EIPESMSSLTFLNHLNLSNNN 875 (979)
Q Consensus 822 ~Ls~N~l~~~ip~~~~~------l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~ 875 (979)
++++|++++..+..|.. ...|+.|++++|.+.. ..|..+..+..++.+++++|+
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999777777754 3789999999999874 567889999999999999985
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9.2e-28 Score=264.51 Aligned_cols=292 Identities=21% Similarity=0.234 Sum_probs=201.6
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEE
Q 042359 123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202 (979)
Q Consensus 123 ~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L 202 (979)
.++++++++++.++. +|..+. ++|++|++++|.+++..|..|+++++|++|++++|.+..+... .+.++++|++|
T Consensus 33 c~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEE
T ss_pred ccCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEE
Confidence 378999999999885 576653 7999999999999977788899999999999999998776432 36788888888
Q ss_pred EccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCC
Q 042359 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282 (979)
Q Consensus 203 ~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L 282 (979)
++++|.+...+... .++|++|++++|+++++++..+..+++|++|++++|.++.. +..|..+..+ +|
T Consensus 108 ~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~l-~L 174 (332)
T 2ft3_A 108 YISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-------GFEPGAFDGL-KL 174 (332)
T ss_dssp ECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-------GSCTTSSCSC-CC
T ss_pred ECCCCcCCccCccc-----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-------CCCcccccCC-cc
Confidence 88888887654321 26788888888888887777788888888888888887632 3345556666 77
Q ss_pred CEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeecc
Q 042359 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLR 362 (979)
Q Consensus 283 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~ 362 (979)
++|++++|.+++ +|..+. ++|++|++++|.+++ +++..+..+++|++|++++| .+.+..+..+..+++|++|+++
T Consensus 175 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECC
T ss_pred CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECC
Confidence 888888877764 444332 567777777777763 32556667777777777777 6666555556666666666655
Q ss_pred CccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccC------CCCCCEE
Q 042359 363 GVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQ------LSTLRVL 436 (979)
Q Consensus 363 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L 436 (979)
+|.+. .+|..+..+++|++|++++|++++..+..|.. .+.|+.|
T Consensus 250 ~N~l~------------------------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 250 NNKLS------------------------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp SSCCC------------------------------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred CCcCe------------------------------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence 55544 23445556666666666666666555554443 2456777
Q ss_pred EcCCCcCcc-ccChhhhcCCCCCcEEEccCCc
Q 042359 437 RINDNKLNG-TLSAIHFANLTKLSWFRVDGNK 467 (979)
Q Consensus 437 ~L~~n~l~~-~l~~~~~~~l~~L~~L~L~~n~ 467 (979)
++++|++.. .++...|..+++|+.+++++|+
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EeecCcccccccCcccccccchhhhhhccccc
Confidence 777777641 3444567777777777777663
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.6e-28 Score=266.26 Aligned_cols=227 Identities=19% Similarity=0.241 Sum_probs=187.1
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 679 (979)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 466777888888777 66777777888888888888887 77878888888888888888887 6777788888888888
Q ss_pred ccCCcccccCChhHHH--------hhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccc
Q 042359 680 VGENEFVGNIPTWIGE--------RFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTA 751 (979)
Q Consensus 680 L~~N~l~~~ip~~~~~--------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~ 751 (979)
+++|++.+.+|..+.. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|..++.++.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L--- 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL--- 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence 8888887788876541 3788888888888888 778888888888999999888874 66666666555
Q ss_pred ccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceec
Q 042359 752 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR 831 (979)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 831 (979)
+.|+|++|++.+.+|..++.+++|+.|+|++|++.+.
T Consensus 232 -------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 232 -------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp -------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred -------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 7888999888888998899999999999999988889
Q ss_pred cCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccc
Q 042359 832 IPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT 877 (979)
Q Consensus 832 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 877 (979)
+|..++++++|+.|||++|++.+.+|+.++++++|+.+++..|.+.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9988999999999999999999999999999999999988876554
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.5e-30 Score=306.73 Aligned_cols=427 Identities=14% Similarity=0.047 Sum_probs=290.1
Q ss_pred ccccccCCCCCCEEeCCCCCCC---CCCccccc------------cCCCCCCEEEcCCCCCCCCCccccCCC--CCCceE
Q 042359 115 INPSLLDLKHLSYLDLSFNDFQ---GIQIPRFF------------GSMGNLRYLNLSRTRIGGMIPHHLGNL--SNLQFL 177 (979)
Q Consensus 115 ~~~~l~~l~~L~~L~Ls~n~i~---~~~lp~~~------------~~l~~L~~L~Ls~n~i~~~~p~~~~~L--~~L~~L 177 (979)
++..+.++++|++|+|+++... +. +|..+ ..+++|++|+|++|.+++..+..++.. .+|++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3445667888999999875321 11 22222 278999999999998876666666653 349999
Q ss_pred ecCCCccccC-CccccccCCCCCCEEEccCccCCCCc-h-hhhhcCCCCCccEEEccCCCCCCCCh----hhhcCCCCCC
Q 042359 178 DLSSNYLLYV-DNFWWLSGLSFLEHLDLRSVNLSKAF-D-WLMVTNKLPSLVELRLANCQLHHFSL----LATANFSSLT 250 (979)
Q Consensus 178 ~Ls~n~i~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~-~-~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~ 250 (979)
++++|..... .......++++|++|++++|.+.+.. . +......+++|++|++++|.+++... ..+..+++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 9998872221 11122457899999999999876542 1 33345678999999999999885543 3456789999
Q ss_pred EEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCc---ccCchhhccCCCCCEEeccCCcCccccCcccccc
Q 042359 251 VLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN---SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGN 327 (979)
Q Consensus 251 ~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~ 327 (979)
+|++++|.+.. +|..+..+++|++|+++..... ...+..+..+++|+.|+++++... .+ +..+..
T Consensus 224 ~L~L~~~~~~~----------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l-~~~~~~ 291 (592)
T 3ogk_B 224 SVKVGDFEILE----------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EM-PILFPF 291 (592)
T ss_dssp EEECSSCBGGG----------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TG-GGGGGG
T ss_pred EEeccCccHHH----------HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HH-HHHHhh
Confidence 99999988752 6677888899999999864332 233455677889999999886433 45 667788
Q ss_pred cCccCEEecCCCCCCcccCc-ccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcC-----------CcC
Q 042359 328 LTSISWLDLSLNMGIEGRIP-RSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRS-----------DSI 395 (979)
Q Consensus 328 l~~L~~L~L~~n~~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~-----------n~l 395 (979)
+++|++|++++| .+.+... ..+..+++|++|+++++...+.++. ....++. |++|++++ +.+
T Consensus 292 ~~~L~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~----~~~~~~~-L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 292 AAQIRKLDLLYA-LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV----LAQYCKQ-LKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGCCEEEETTC-CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH----HHHHCTT-CCEEEEECCCCSSTTSSTTCCC
T ss_pred cCCCcEEecCCC-cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH----HHHhCCC-CCEEEeecCccccccccccCcc
Confidence 899999999998 5655433 4467889999999984322222222 2233444 99999993 555
Q ss_pred cccc-ccccCCCCCCcEEeccCCcCcccCcccccC-CCCCCEEEcC----CCcCccc-----cChhhhcCCCCCcEEEcc
Q 042359 396 YGHL-TDQLGQFKNIVTLDFANNSIVGLIPESLGQ-LSTLRVLRIN----DNKLNGT-----LSAIHFANLTKLSWFRVD 464 (979)
Q Consensus 396 ~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~-----l~~~~~~~l~~L~~L~L~ 464 (979)
++.. +.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++. .+.++++|+.|+++
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFY 444 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEe
Confidence 5432 223456889999999888888776666665 8899999996 5666642 222 36678899999987
Q ss_pred CCc--ccccccCCC-CCcccccEEecccccCCC-CCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCc
Q 042359 465 GNK--LTLGVKHDW-IPPFQLVALGLRNCYVGS-RFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQ 540 (979)
Q Consensus 465 ~n~--l~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 540 (979)
++. ++......+ ...++|+.|++++|.+++ .++..+..+++|++|++++|.+++.....+...+++|++|++++|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 543 332211111 124578888888888765 3455667788888888888887666555666678888888888888
Q ss_pred CCCCCC-Cc-ccccCCcEEEeec
Q 042359 541 IHGPIP-NL-TEFTGLLILSVYS 561 (979)
Q Consensus 541 l~~~~~-~l-~~~~~L~~L~l~~ 561 (979)
+++.-- .+ ..++.+....+..
T Consensus 525 it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 525 ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CCTTCTTGGGGCCTTEEEEEECC
T ss_pred CCHHHHHHHHHhCCCcEEEEecC
Confidence 775422 22 2344554444443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.4e-28 Score=267.73 Aligned_cols=279 Identities=19% Similarity=0.193 Sum_probs=223.1
Q ss_pred ccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEE
Q 042359 551 FTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630 (979)
Q Consensus 551 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 630 (979)
++.....+.+++.++......+++|++|++++|.+++..+.. +..+++|+.|++++|++++..|..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHH----hccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 333344555666666554445678999999999988755433 3558999999999999998888889999999999
Q ss_pred EccCCcccccCCcccCCCCCccEEEcCCcccccccc-ccccCCCCCCEEeccCCc-ccccCChhHHHhhhccceeeccCC
Q 042359 631 KLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL-VSLKNCTALESLDVGENE-FVGNIPTWIGERFSRMVVLILRSN 708 (979)
Q Consensus 631 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~-l~~~ip~~~~~~l~~L~~L~L~~n 708 (979)
++++|++++..+..+..+++|++|++++|++++..+ ..+.++++|++|++++|. +.+..|..+. .+++|+.|++++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEET
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCC
Confidence 999999995444458899999999999999985444 478899999999999995 5544445555 7899999999999
Q ss_pred cccCCCCccccCCCCccEEEccCCccccccCcc-hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchh
Q 042359 709 KFHGPLPTGLCDLAFLQILDIADNNLSGAIPNC-INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY 787 (979)
Q Consensus 709 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (979)
++++..|..+..+++|+.|++++|++. .+|.. +..
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~------------------------------------------- 220 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDV------------------------------------------- 220 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHH-------------------------------------------
T ss_pred CcCccCHHHHhccccCCeecCCCCccc-cchhhhhhh-------------------------------------------
Confidence 999888999999999999999999985 34432 222
Q ss_pred hhhccceeEEecccCccccccccccc---CCCCCCEEeCCCCccee----ccCCCCCccCCCCEEECcCCcccccCCCC-
Q 042359 788 EDILNLVRMIDISRNNFSGKIPLEVT---NLKALQSLNFSYNSFTG----RIPESIGVMRSLESIDFSANQLSGEIPES- 859 (979)
Q Consensus 788 ~~~~~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~- 859 (979)
++.|+.|++++|++++..+..+. ....++.++|++|.+++ .+|+.++.+++|+.|||++|+++ .+|..
T Consensus 221 ---~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~ 296 (353)
T 2z80_A 221 ---TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296 (353)
T ss_dssp ---TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ---cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence 34458999999999976665543 46778899999999887 47888999999999999999999 56666
Q ss_pred CCCCCCCCEEEccCCcccccCCC
Q 042359 860 MSSLTFLNHLNLSNNNLTGKIPS 882 (979)
Q Consensus 860 l~~l~~L~~L~ls~N~l~g~ip~ 882 (979)
++.+++|++|++++|+++|.+|.
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCCHHH
T ss_pred HhcCCCCCEEEeeCCCccCcCCC
Confidence 58999999999999999998774
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.2e-27 Score=256.13 Aligned_cols=233 Identities=21% Similarity=0.264 Sum_probs=183.9
Q ss_pred CcccEEeccCccccccCCccccCCCCCCEEEccCCcccc--cCCcccCCCCCccEEEcCCccccccccccccCCCCCCEE
Q 042359 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTG--NLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESL 678 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 678 (979)
++|++|++++|++.+..+..+.++++|++|++++|+++. ..|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 466677777777664434446777788888888887763 23555666778888888888877 466667788888888
Q ss_pred eccCCcccccCC-hhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCcccc-ccCcchhhcccCcccccccc
Q 042359 679 DVGENEFVGNIP-TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSG-AIPNCINNLTGMVTACSFTR 756 (979)
Q Consensus 679 ~L~~N~l~~~ip-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~ 756 (979)
++++|++++..+ ..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..++.|
T Consensus 107 ~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------- 177 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------- 177 (306)
T ss_dssp ECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------
T ss_pred ECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC--------
Confidence 888888875433 2343 67888888888888888888888888999999999998876 567766666555
Q ss_pred cccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCC
Q 042359 757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI 836 (979)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 836 (979)
+.|||++|++++..|..++.+++|+.|+|++|++++..+..+
T Consensus 178 --------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 178 --------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp --------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred --------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 789999999998888899999999999999999997777788
Q ss_pred CccCCCCEEECcCCcccccCCCCCCCCC-CCCEEEccCCcccccCC
Q 042359 837 GVMRSLESIDFSANQLSGEIPESMSSLT-FLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 837 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip 881 (979)
..+++|+.|||++|++++..|..+..++ +|++|++++|+++|..+
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 8899999999999999999999999884 89999999999987643
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.4e-27 Score=259.94 Aligned_cols=275 Identities=20% Similarity=0.232 Sum_probs=221.1
Q ss_pred EEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCcccccc--CCccccCCCCCCEEEcc
Q 042359 556 ILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE--LPDCWMSYQNLKTLKLS 633 (979)
Q Consensus 556 ~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls 633 (979)
.++.+++.++......++++++|++++|.++...+.. +..+++|++|++++|.+... .|..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhH----hhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3444444444444444678888888888887433322 34588999999999988733 35667788999999999
Q ss_pred CCcccccCCcccCCCCCccEEEcCCcccccccc-ccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccC
Q 042359 634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL-VSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG 712 (979)
Q Consensus 634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~ 712 (979)
+|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccc
Confidence 99998 577778899999999999999987655 5788999999999999999877777665 78999999999999987
Q ss_pred -CCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhc
Q 042359 713 -PLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL 791 (979)
Q Consensus 713 -~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (979)
.+|..+..+++|+.|++++|++++..|..+.+++.|
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------------- 201 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------------------------------- 201 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------------------------------
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-------------------------------------------
Confidence 578889999999999999999998888887776665
Q ss_pred cceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc-CCCCEEECcCCcccccCC--CCCCCCCCCCE
Q 042359 792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM-RSLESIDFSANQLSGEIP--ESMSSLTFLNH 868 (979)
Q Consensus 792 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l-~~L~~LdLs~N~l~~~ip--~~l~~l~~L~~ 868 (979)
+.|+|++|++++..+..+..+++|+.|+|++|++++.+|..+..+ ++|++|||++|++++..+ ....-+...+.
T Consensus 202 ---~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~ 278 (306)
T 2z66_A 202 ---QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 278 (306)
T ss_dssp ---CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred ---CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence 899999999998888889999999999999999999999999998 499999999999987532 11122333445
Q ss_pred EEccCCcccccCCC
Q 042359 869 LNLSNNNLTGKIPS 882 (979)
Q Consensus 869 L~ls~N~l~g~ip~ 882 (979)
+.+..+.+.+..|.
T Consensus 279 ~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 279 LLVEVERMECATPS 292 (306)
T ss_dssp GBSCGGGCBEEESG
T ss_pred hhccccccccCCch
Confidence 56677788877775
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=8.2e-28 Score=262.03 Aligned_cols=244 Identities=19% Similarity=0.246 Sum_probs=152.4
Q ss_pred CCcEEEcccccccccCChhhhhcccCCCcccEEeccCccc-cccCCcccc-------CCCCCCEEEccCCcccccCCccc
Q 042359 574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYL-NGELPDCWM-------SYQNLKTLKLSNNKFTGNLPYSM 645 (979)
Q Consensus 574 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l 645 (979)
+|+++++++|.+ .+|..+.. .|+.|++++|.+ .+.+|..+. ++++|++|++++|++++.+|..+
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CceeEeeccccc--ccHHHHHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 455555555555 44444332 255556666655 233444333 45566666666666665555554
Q ss_pred --CCCCCccEEEcCCccccccccccccCC-----CCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCC--CCc
Q 042359 646 --GSLTSLVWLHLGENRLSGNILVSLKNC-----TALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP--LPT 716 (979)
Q Consensus 646 --~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~--~p~ 716 (979)
..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..+. .+++|+.|++++|++.+. .|.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHH
Confidence 5566666666666666554 5444444 5666666666666544444444 456666666666665543 223
Q ss_pred cc--cCCCCccEEEccCCcccc--ccCcc-hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhc
Q 042359 717 GL--CDLAFLQILDIADNNLSG--AIPNC-INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL 791 (979)
Q Consensus 717 ~l--~~l~~L~~L~Ls~n~l~~--~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (979)
.+ ..+++|+.|++++|++++ .++.. +.+ +
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~----------------------------------------------l 227 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAA----------------------------------------------R 227 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT----------------------------------------------T
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhc----------------------------------------------C
Confidence 33 667777777777777762 11111 112 2
Q ss_pred cceeEEecccCccccccc-ccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEE
Q 042359 792 NLVRMIDISRNNFSGKIP-LEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLN 870 (979)
Q Consensus 792 ~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 870 (979)
+.|+.|||++|++++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 345788888888887775 45566788888888888888 7787776 7888888888888865 65 78888888888
Q ss_pred ccCCcccc
Q 042359 871 LSNNNLTG 878 (979)
Q Consensus 871 ls~N~l~g 878 (979)
+++|++++
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 88888875
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=258.06 Aligned_cols=265 Identities=20% Similarity=0.244 Sum_probs=166.6
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL 193 (979)
Q Consensus 114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l 193 (979)
.+|..+. ++|++|++++|.++++ .+..++.+++|++|++++|.+++..|..|+++++|++|++++|.+..++.
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---- 117 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS---- 117 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH----
T ss_pred ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH----
Confidence 4555554 4899999999999875 34578999999999999999988778888888888888888887765542
Q ss_pred cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCCh-hhhcCCCCCCEEECCCCC-CCCCCCCCccccc
Q 042359 194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL-LATANFSSLTVLDLSDNQ-FDKWFIPSWVFGP 271 (979)
Q Consensus 194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~ 271 (979)
..+..+++|++|++++|++++++. ..+..+++|++|++++|. ++ ..
T Consensus 118 -----------------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------~~ 165 (353)
T 2z80_A 118 -----------------------SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------KI 165 (353)
T ss_dssp -----------------------HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------EE
T ss_pred -----------------------hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc---------cc
Confidence 123445555555555555555444 455556666666666653 33 22
Q ss_pred CCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCccccc
Q 042359 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA 351 (979)
Q Consensus 272 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~ 351 (979)
.+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .++...+..+++|++|++++| .+.+..+..+.
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~ 243 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT-DLDTFHFSELS 243 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESC-BCTTCCCC---
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCC-ccccccccccc
Confidence 3445556666666666666666555666666666666666666654 332333444566666666666 44433322221
Q ss_pred ---CCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCcc----ccccccCCCCCCcEEeccCCcCcccCc
Q 042359 352 ---SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYG----HLTDQLGQFKNIVTLDFANNSIVGLIP 424 (979)
Q Consensus 352 ---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p 424 (979)
.... ++.++++++.+.+ .+|..+..+++|++|++++|+++...+
T Consensus 244 ~~~~~~~-----------------------------l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~ 294 (353)
T 2z80_A 244 TGETNSL-----------------------------IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294 (353)
T ss_dssp ---CCCC-----------------------------CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred cccccch-----------------------------hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence 1122 4444454444443 345567777888888888888874433
Q ss_pred ccccCCCCCCEEEcCCCcCccccC
Q 042359 425 ESLGQLSTLRVLRINDNKLNGTLS 448 (979)
Q Consensus 425 ~~l~~l~~L~~L~L~~n~l~~~l~ 448 (979)
..|..+++|++|++++|++.+..+
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcCCCCCEEEeeCCCccCcCC
Confidence 335778888888888888776544
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.8e-28 Score=290.76 Aligned_cols=234 Identities=11% Similarity=0.087 Sum_probs=136.1
Q ss_pred CChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCC-cccccCCcEEEeec-----------cc
Q 042359 496 FPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYS-----------NN 563 (979)
Q Consensus 496 ~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-l~~~~~L~~L~l~~-----------n~ 563 (979)
+|..+..+++|++|++++|.+.+.....+...+++|++|+++++...+.++. ...+++|+.|++++ +.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 3344444455555555555543333333334455555555552211111221 12344555555552 23
Q ss_pred CCCCC----CccCCCCcEEEcccccccccCChhhhhcccCCCcccEEecc----Ccccccc-----CCccccCCCCCCEE
Q 042359 564 MSGPL----PLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLN----DNYLNGE-----LPDCWMSYQNLKTL 630 (979)
Q Consensus 564 l~~~~----~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L 630 (979)
+++.. ...+++|++|+++.|.+++..+..+.. .+++|+.|+++ .|.+++. ++..+.++++|++|
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 32211 112567778888777776654443322 26778888885 5566643 33335668888888
Q ss_pred EccCCc--ccccCCcccC-CCCCccEEEcCCcccccc-ccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeecc
Q 042359 631 KLSNNK--FTGNLPYSMG-SLTSLVWLHLGENRLSGN-ILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR 706 (979)
Q Consensus 631 ~Ls~N~--l~~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~ 706 (979)
++++|. +++..+..+. .+++|++|++++|++++. ++..+.++++|++|++++|++++....++...+++|+.|+++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECc
Confidence 887544 5544444443 377899999999888763 455567888999999999988765444444468889999999
Q ss_pred CCcccCCCCccc-cCCCCccEEEccCC
Q 042359 707 SNKFHGPLPTGL-CDLAFLQILDIADN 732 (979)
Q Consensus 707 ~n~l~~~~p~~l-~~l~~L~~L~Ls~n 732 (979)
+|++++.....+ ..++.+....+..+
T Consensus 522 ~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 522 GYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 998876533333 34566666555543
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.9e-26 Score=259.38 Aligned_cols=231 Identities=21% Similarity=0.218 Sum_probs=174.2
Q ss_pred CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV 680 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 680 (979)
++++.|+|++|++.+..|..|.++++|++|++++|++++..|..|..+++|++|+|++|++++..+..+.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666666666666666666777777777777777777666667777777777777777777655566777777777777
Q ss_pred cCCcccccCChhHHHhhhccceeeccCCcccCCCC-ccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ 759 (979)
Q Consensus 681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 759 (979)
++|++. .+|...+..+++|+.|++++|...+.+| ..+..+++|+.|++++|++++ +|. +..+
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l-------------- 217 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPL-------------- 217 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CTTC--------------
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-cccc--------------
Confidence 777776 3443333367777777777744333443 457788888888888888873 332 3333
Q ss_pred ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359 760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839 (979)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 839 (979)
..|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..+
T Consensus 218 --------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 218 --------------------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp --------------------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred --------------------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 334889999999998889999999999999999999999889999999
Q ss_pred CCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccC
Q 042359 840 RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKI 880 (979)
Q Consensus 840 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 880 (979)
++|+.|||++|++++..+..+..+++|+.|+|++|++.+..
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 99999999999999888888899999999999999987643
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=257.77 Aligned_cols=230 Identities=23% Similarity=0.228 Sum_probs=169.7
Q ss_pred CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV 680 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 680 (979)
++++.|+|++|++.+..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45566666666666555566666667777777777766555566666777777777777776555556667777777777
Q ss_pred cCCcccccCChhHHHhhhccceeeccCCcccCCC-CccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPL-PTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ 759 (979)
Q Consensus 681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 759 (979)
++|++.. +|...+..+++|+.|++++|...+.+ +..+..+++|+.|++++|+++ .+|. +..+
T Consensus 144 ~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l-------------- 206 (440)
T 3zyj_A 144 RNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPL-------------- 206 (440)
T ss_dssp CSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTC--------------
T ss_pred CCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCC--------------
Confidence 7777663 33322235677777777764433333 345778888888888888886 4442 3333
Q ss_pred ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359 760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839 (979)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 839 (979)
+.|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..+
T Consensus 207 --------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 207 --------------------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp --------------------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred --------------------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 334889999999998889999999999999999999999889999999
Q ss_pred CCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359 840 RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK 879 (979)
Q Consensus 840 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 879 (979)
++|+.|||++|++++..+..+..+++|+.|+|++|++.+.
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 9999999999999988888889999999999999998764
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.6e-26 Score=246.97 Aligned_cols=228 Identities=21% Similarity=0.188 Sum_probs=158.6
Q ss_pred cEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCC
Q 042359 604 NALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGEN 683 (979)
Q Consensus 604 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 683 (979)
+.++.+++.+. .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34455555554 334332 246666666666666555556666667777777777666666666666777777777777
Q ss_pred c-ccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccC
Q 042359 684 E-FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYL 762 (979)
Q Consensus 684 ~-l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 762 (979)
+ +....|..+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..++.+++|
T Consensus 91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 155 (285)
T 1ozn_A 91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------- 155 (285)
T ss_dssp TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence 5 4432244443 56777777777777776666777777788888888887775555555555444
Q ss_pred CCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCC
Q 042359 763 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSL 842 (979)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L 842 (979)
+.|+|++|++++..+..+..+++|+.|+|++|++++..|..++.+++|
T Consensus 156 --------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 156 --------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp --------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred --------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 678888888876666668888888888888888888878888888888
Q ss_pred CEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359 843 ESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 843 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 881 (979)
+.||+++|++++..|..+..+++|++|++++|++++..+
T Consensus 204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 888888888887666778888888888888888887554
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.5e-25 Score=257.93 Aligned_cols=250 Identities=20% Similarity=0.180 Sum_probs=218.6
Q ss_pred CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEcc
Q 042359 554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS 633 (979)
Q Consensus 554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 633 (979)
...++.++..++......++++++|++++|.+++..+..+ ..+++|+.|+|++|.+.+..|..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~----~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF----RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHc----CCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3455555555555444456789999999999988766554 558999999999999998888999999999999999
Q ss_pred CCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCC
Q 042359 634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP 713 (979)
Q Consensus 634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 713 (979)
+|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+..+.+|...+..+++|+.|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99999777777999999999999999999877778999999999999997666677776555899999999999999854
Q ss_pred CCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccc
Q 042359 714 LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL 793 (979)
Q Consensus 714 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (979)
| .+..+++|+.|++++|++++..|..+.+++.|
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------------------- 244 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL--------------------------------------------- 244 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC---------------------------------------------
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCC---------------------------------------------
Confidence 4 58899999999999999998888888877766
Q ss_pred eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc
Q 042359 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE 855 (979)
Q Consensus 794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 855 (979)
+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 245 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 245 -KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp -CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred -CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 8999999999999999999999999999999999988888899999999999999998754
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.3e-26 Score=247.43 Aligned_cols=252 Identities=16% Similarity=0.186 Sum_probs=188.3
Q ss_pred cEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEE
Q 042359 576 VFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLH 655 (979)
Q Consensus 576 ~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 655 (979)
+.++.+++.++. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 14 ~~~~c~~~~l~~-ip~~~------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSS-CCTTC------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCccc-CCcCC------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 445555555543 23211 35677777777777766666777778888888888888776677788888888888
Q ss_pred cCCcc-ccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCcc
Q 042359 656 LGENR-LSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNL 734 (979)
Q Consensus 656 L~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 734 (979)
+++|+ +....|..+..+++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 88886 6665577788888888888888888765555554 678888888888888876666788888999999999988
Q ss_pred ccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccC
Q 042359 735 SGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN 814 (979)
Q Consensus 735 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~ 814 (979)
++..+..+..++.| +.|+|++|++++..|..++.
T Consensus 166 ~~~~~~~~~~l~~L----------------------------------------------~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 166 SSVPERAFRGLHSL----------------------------------------------DRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp CEECTTTTTTCTTC----------------------------------------------CEEECCSSCCCEECTTTTTT
T ss_pred cccCHHHhcCcccc----------------------------------------------CEEECCCCcccccCHhHccC
Confidence 86555556655554 78899999999888899999
Q ss_pred CCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCC
Q 042359 815 LKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPS 882 (979)
Q Consensus 815 l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 882 (979)
+++|+.|++++|++++..|..+..+++|+.|+|++|++.+..+.. .-...++.++.+.|.+.+..|.
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 999999999999999766677888999999999999998754421 1123345556778888888885
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.3e-25 Score=255.32 Aligned_cols=250 Identities=22% Similarity=0.211 Sum_probs=217.7
Q ss_pred CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEcc
Q 042359 554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS 633 (979)
Q Consensus 554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 633 (979)
...++.+++.++......+++++.|++++|.+.+..+.. +..+++|+.|+|++|.+.+..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445566666666555555788999999999998776654 4568999999999999998888899999999999999
Q ss_pred CCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCC
Q 042359 634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP 713 (979)
Q Consensus 634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 713 (979)
+|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+..+.++...+..+++|+.|++++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999996666689999999999999999998777899999999999999977666777765558999999999999998 4
Q ss_pred CCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccc
Q 042359 714 LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL 793 (979)
Q Consensus 714 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (979)
+| .+..+++|+.|++++|++++..|..+.+++.|
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------------------- 233 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL--------------------------------------------- 233 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccC---------------------------------------------
Confidence 55 58899999999999999998888888877766
Q ss_pred eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc
Q 042359 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE 855 (979)
Q Consensus 794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 855 (979)
+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus 234 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 234 -QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp -CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred -CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 8999999999999999999999999999999999988888899999999999999998753
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.8e-27 Score=255.96 Aligned_cols=247 Identities=19% Similarity=0.240 Sum_probs=209.3
Q ss_pred CCCcccEEeccCccccccCCccccCCCCCCEEEccCCcc-cccCCcccC-------CCCCccEEEcCCccccccccccc-
Q 042359 599 ETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKF-TGNLPYSMG-------SLTSLVWLHLGENRLSGNILVSL- 669 (979)
Q Consensus 599 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~l- 669 (979)
..++|+.+++++|.+ .+|..+... |+.|++++|++ .+.+|..+. .+++|++|++++|++++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 367899999999999 778766654 99999999999 456776655 78999999999999999999886
Q ss_pred -cCCCCCCEEeccCCcccccCChhHHHhh-----hccceeeccCCcccCCCCccccCCCCccEEEccCCcccccc--Ccc
Q 042359 670 -KNCTALESLDVGENEFVGNIPTWIGERF-----SRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAI--PNC 741 (979)
Q Consensus 670 -~~l~~L~~L~L~~N~l~~~ip~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~ 741 (979)
..+++|++|++++|++++. |..+. .+ ++|++|++++|++++..|..+..+++|+.|++++|++.+.+ |..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8999999999999999976 87776 56 89999999999999988899999999999999999987653 322
Q ss_pred h--hhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccc--ccc-ccccCCC
Q 042359 742 I--NNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG--KIP-LEVTNLK 816 (979)
Q Consensus 742 ~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~--~ip-~~l~~l~ 816 (979)
+ .+++ .|+.|+|++|++++ .++ ..+.+++
T Consensus 195 ~~~~~l~----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 195 LCPLKFP----------------------------------------------TLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp SCTTSCT----------------------------------------------TCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred HHhccCC----------------------------------------------CCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 2 3333 45899999999983 333 3446889
Q ss_pred CCCEEeCCCCcceeccC-CCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccC
Q 042359 817 ALQSLNFSYNSFTGRIP-ESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFA 895 (979)
Q Consensus 817 ~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~ 895 (979)
+|+.|+|++|++++.+| ..+..+++|++|||++|+++ .+|..+. ++|++||+++|++++. |....+..+....+.
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLK 304 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECT
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEecc
Confidence 99999999999998886 56777899999999999999 8888877 8999999999999986 766677778888888
Q ss_pred CCCCCC
Q 042359 896 GNDLCG 901 (979)
Q Consensus 896 ~n~lcg 901 (979)
+|.+.+
T Consensus 305 ~N~l~~ 310 (312)
T 1wwl_A 305 GNPFLD 310 (312)
T ss_dssp TCTTTC
T ss_pred CCCCCC
Confidence 887654
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.5e-24 Score=253.39 Aligned_cols=261 Identities=25% Similarity=0.302 Sum_probs=182.9
Q ss_pred ccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccC
Q 042359 531 LKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLND 610 (979)
Q Consensus 531 L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~ 610 (979)
++.|++++|.++...+.+. ++|+.|++++|.++. +|..+++|++|++++|++++ +|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECS
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcC
Confidence 5555555555552222222 455555666555553 33355677777777777664 332 257777777777
Q ss_pred ccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCC
Q 042359 611 NYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIP 690 (979)
Q Consensus 611 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip 690 (979)
|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.++ .+|
T Consensus 111 N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~ 177 (622)
T 3g06_A 111 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP 177 (622)
T ss_dssp CCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC
T ss_pred CcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc
Confidence 77774 343 45678888888888773 5543 3778888888888774 343 3467888888888887 466
Q ss_pred hhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccce
Q 042359 691 TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGV 770 (979)
Q Consensus 691 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 770 (979)
. .+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|..+
T Consensus 178 ~----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~---------------------------- 220 (622)
T 3g06_A 178 M----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---------------------------- 220 (622)
T ss_dssp C----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC----------------------------
T ss_pred c----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC----------------------------
Confidence 2 46788888888888874 4433 467888888888876 344321
Q ss_pred eeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCC
Q 042359 771 ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSAN 850 (979)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N 850 (979)
+.|+.|+|++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|
T Consensus 221 ---------------------~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 221 ---------------------SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp ---------------------TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred ---------------------CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCC
Confidence 234788999999985 66 45688999999999998 6776 5688999999999
Q ss_pred cccccCCCCCCCCCCCCEEEccCCcccccCCC
Q 042359 851 QLSGEIPESMSSLTFLNHLNLSNNNLTGKIPS 882 (979)
Q Consensus 851 ~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 882 (979)
+|+ .+|..+..+++|+.|+|++|+++|.+|.
T Consensus 272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 998 7888899999999999999999987764
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-25 Score=257.07 Aligned_cols=223 Identities=18% Similarity=0.176 Sum_probs=188.2
Q ss_pred cCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCE
Q 042359 598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALES 677 (979)
Q Consensus 598 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 677 (979)
..+++|+.|+|++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 345689999999999998888889999999999999999987665 8889999999999999986433 388999
Q ss_pred EeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchh-hcccCcccccccc
Q 042359 678 LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCIN-NLTGMVTACSFTR 756 (979)
Q Consensus 678 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~l~~~~~~~~ 756 (979)
|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+. +++.|
T Consensus 104 L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-------- 171 (487)
T 3oja_A 104 LHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-------- 171 (487)
T ss_dssp EECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC--------
T ss_pred EECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc--------
Confidence 99999999865543 367899999999999998888899999999999999999988887664 45544
Q ss_pred cccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCC
Q 042359 757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI 836 (979)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 836 (979)
+.|+|++|.+++..+ +..+++|+.|+|++|++++. |..+
T Consensus 172 --------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~ 210 (487)
T 3oja_A 172 --------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEF 210 (487)
T ss_dssp --------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGG
T ss_pred --------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhH
Confidence 889999999996633 34689999999999999964 4458
Q ss_pred CccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccc-ccCC
Q 042359 837 GVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT-GKIP 881 (979)
Q Consensus 837 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip 881 (979)
+.+++|+.|||++|++++ +|..+..+++|+.|++++|++. +.+|
T Consensus 211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 999999999999999995 7888999999999999999998 4444
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2e-26 Score=251.66 Aligned_cols=128 Identities=21% Similarity=0.159 Sum_probs=58.3
Q ss_pred CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV 680 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 680 (979)
++|++|++++|++.+..|..+..+++|++|++++|++++..+ +..+++|++|++++|++++.. ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence 344444444444444444444444445555555554443332 444445555555555444311 1244455555
Q ss_pred cCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccC
Q 042359 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP 739 (979)
Q Consensus 681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 739 (979)
++|++++..+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 107 ~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp CSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 55544432221 13445555555555544444444444555555555555544333
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-25 Score=244.82 Aligned_cols=263 Identities=21% Similarity=0.194 Sum_probs=214.6
Q ss_pred cEEEeecccCCCCCC---ccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEE
Q 042359 555 LILSVYSNNMSGPLP---LISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLK 631 (979)
Q Consensus 555 ~~L~l~~n~l~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 631 (979)
+..+++.+.+..... ..+++|++|++++|.+++..|..+ ..+++|+.|++++|.+++..+ +..+++|++|+
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 86 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL----APFTKLELLNLSSNVLYETLD--LESLSTLRTLD 86 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHH----TTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHh----hCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence 344455555433222 225689999999999998766554 458999999999999987665 88999999999
Q ss_pred ccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCccc
Q 042359 632 LSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFH 711 (979)
Q Consensus 632 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~ 711 (979)
+++|++++.. ..++|++|++++|++++..+.. +++|++|++++|++++..|..+. .+++|+.|++++|+++
T Consensus 87 Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 87 LNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEID 157 (317)
T ss_dssp CCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCC
T ss_pred CcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCC
Confidence 9999998533 3489999999999999766554 67899999999999976565665 7999999999999999
Q ss_pred CCCCcccc-CCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhh
Q 042359 712 GPLPTGLC-DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI 790 (979)
Q Consensus 712 ~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (979)
+..|..+. .+++|+.|++++|++++. |... .
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~-~---------------------------------------------- 189 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-KGQV-V---------------------------------------------- 189 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-ECCC-C----------------------------------------------
T ss_pred cccHHHHhhccCcCCEEECCCCcCccc-cccc-c----------------------------------------------
Confidence 88777764 789999999999998744 2211 1
Q ss_pred ccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccc-ccCCCCCCCCCCCCEE
Q 042359 791 LNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLS-GEIPESMSSLTFLNHL 869 (979)
Q Consensus 791 ~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L 869 (979)
++.|+.|||++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ +.+|..+..++.|+.+
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 2345899999999995 5666999999999999999999 68889999999999999999999 7888999999999999
Q ss_pred Ecc-CCcccccCCC
Q 042359 870 NLS-NNNLTGKIPS 882 (979)
Q Consensus 870 ~ls-~N~l~g~ip~ 882 (979)
+++ .+.++|..|.
T Consensus 268 ~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 268 AKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHSSSSC
T ss_pred ECCCchhccCCchh
Confidence 998 5567777664
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.3e-24 Score=255.77 Aligned_cols=292 Identities=21% Similarity=0.230 Sum_probs=164.6
Q ss_pred CCCCCCCCCCCCccccceeccC------CCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCC
Q 042359 60 NRLASWSGNGDCCAWAGVFCDN------ITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFN 133 (979)
Q Consensus 60 ~~l~~W~~~~~~c~w~gv~c~~------~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n 133 (979)
..++.|..+.+||.|+|..|.- ....++.++++++ .+. .+|..+. ++|++|+|++|
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n---------------~L~-~lp~~l~--~~L~~L~L~~N 71 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES---------------GLT-TLPDCLP--AHITTLVIPDN 71 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS---------------CCS-CCCSCCC--TTCSEEEECSC
T ss_pred HHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCC---------------CcC-ccChhhC--CCCcEEEecCC
Confidence 3456787677899997753310 0123556666652 333 4555444 56666666666
Q ss_pred CCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCc
Q 042359 134 DFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAF 213 (979)
Q Consensus 134 ~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 213 (979)
.++. +|. .+++|++|+|++|++++ +|. .+++|++|++++|.+..++. .+++|++|++++|.++.
T Consensus 72 ~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~-- 135 (622)
T 3g06_A 72 NLTS--LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTS-- 135 (622)
T ss_dssp CCSC--CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSC--
T ss_pred CCCC--CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCc--
Confidence 6664 344 35666666666666653 443 45666666666666555443 34455555555555444
Q ss_pred hhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCc
Q 042359 214 DWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293 (979)
Q Consensus 214 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~ 293 (979)
++. .+++|++|++++|.++. +|. .+++|+.|++++|.++
T Consensus 136 ------------------------lp~----~l~~L~~L~Ls~N~l~~----------l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 136 ------------------------LPV----LPPGLQELSVSDNQLAS----------LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp ------------------------CCC----CCTTCCEEECCSSCCSC----------CCC---CCTTCCEEECCSSCCS
T ss_pred ------------------------CCC----CCCCCCEEECcCCcCCC----------cCC---ccCCCCEEECCCCCCC
Confidence 332 12445555555555442 221 1234555555555554
Q ss_pred ccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchh
Q 042359 294 SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEI 373 (979)
Q Consensus 294 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 373 (979)
+ +| ..+++|++|++++|.+++ + +. .+++|+.|++++| .+.. +|. .+++|+.|++++|.+++ +|.
T Consensus 175 ~-l~---~~~~~L~~L~Ls~N~l~~-l-~~---~~~~L~~L~L~~N-~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp~- 238 (622)
T 3g06_A 175 S-LP---MLPSGLQELSVSDNQLAS-L-PT---LPSELYKLWAYNN-RLTS-LPA---LPSGLKELIVSGNRLTS-LPV- 238 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSC-C-CC---CCTTCCEEECCSS-CCSS-CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred C-Cc---ccCCCCcEEECCCCCCCC-C-CC---ccchhhEEECcCC-cccc-cCC---CCCCCCEEEccCCccCc-CCC-
Confidence 3 23 234455555555555542 2 11 1245555555555 4442 222 23556666666666554 221
Q ss_pred hhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhc
Q 042359 374 LDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFA 453 (979)
Q Consensus 374 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~ 453 (979)
.. .+|+.|++++|.++. +|. .+++|+.|++++|.++ .+|..+.++++|+.|+|++|++.+..+. .+.
T Consensus 239 ------~l-~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~-~l~ 305 (622)
T 3g06_A 239 ------LP-SELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ-ALR 305 (622)
T ss_dssp ------CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH-HHH
T ss_pred ------CC-CcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH-HHH
Confidence 11 237777888777764 333 5678899999999888 5677888899999999999998866554 444
Q ss_pred CC
Q 042359 454 NL 455 (979)
Q Consensus 454 ~l 455 (979)
.+
T Consensus 306 ~L 307 (622)
T 3g06_A 306 EI 307 (622)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.7e-24 Score=228.97 Aligned_cols=212 Identities=21% Similarity=0.203 Sum_probs=163.9
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceee
Q 042359 625 QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLI 704 (979)
Q Consensus 625 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~ 704 (979)
++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++++|++++..|..+. .+++|+.|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEE
Confidence 3577777777777765555677777777777777777766666777777777777777777755555554 677777777
Q ss_pred ccCCcccCCCCccccCCCCccEEEccCCcccc-ccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCc
Q 042359 705 LRSNKFHGPLPTGLCDLAFLQILDIADNNLSG-AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGE 783 (979)
Q Consensus 705 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (979)
+++|.+.+..+..+..+++|+.|++++|++.+ .+|..+.++++|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L----------------------------------- 151 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL----------------------------------- 151 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------------------------
Confidence 77777776666678888888888888888876 357777766655
Q ss_pred cchhhhhccceeEEecccCcccccccccccCCCCCC----EEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC
Q 042359 784 MVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQ----SLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES 859 (979)
Q Consensus 784 ~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~ 859 (979)
+.|+|++|++++..+..+..+++|+ .|++++|++++..+..+. ..+|+.|+|++|++++..+..
T Consensus 152 -----------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 152 -----------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp -----------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTT
T ss_pred -----------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhH
Confidence 7888889988877777777777777 899999999966555554 458999999999999777777
Q ss_pred CCCCCCCCEEEccCCcccccCCCCc
Q 042359 860 MSSLTFLNHLNLSNNNLTGKIPSST 884 (979)
Q Consensus 860 l~~l~~L~~L~ls~N~l~g~ip~~~ 884 (979)
+..+++|++|++++|+++|..|...
T Consensus 220 ~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 220 FDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp TTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred hcccccccEEEccCCcccccCCchH
Confidence 8999999999999999999887643
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3e-25 Score=256.50 Aligned_cols=236 Identities=21% Similarity=0.181 Sum_probs=200.8
Q ss_pred CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL 651 (979)
Q Consensus 572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 651 (979)
+++|++|++++|.+++..|..+ +.+++|+.|+|++|.+++..| +..+++|++|++++|.+++..+ .++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL----APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG----TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTC
T ss_pred CCCccEEEeeCCcCCCCCHHHH----hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCc
Confidence 4578888888888887666544 558999999999999987766 8899999999999999985332 3899
Q ss_pred cEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCcccc-CCCCccEEEcc
Q 042359 652 VWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC-DLAFLQILDIA 730 (979)
Q Consensus 652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls 730 (979)
++|++++|.+++..+. .+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|+.|+++
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 9999999999987665 457899999999999987777776 799999999999999998888886 79999999999
Q ss_pred CCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccc
Q 042359 731 DNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 810 (979)
Q Consensus 731 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~ 810 (979)
+|.+++..+. .. ++.|+.|||++|++++ +|.
T Consensus 178 ~N~l~~~~~~--~~----------------------------------------------l~~L~~L~Ls~N~l~~-~~~ 208 (487)
T 3oja_A 178 YNFIYDVKGQ--VV----------------------------------------------FAKLKTLDLSSNKLAF-MGP 208 (487)
T ss_dssp TSCCCEEECC--CC----------------------------------------------CTTCCEEECCSSCCCE-ECG
T ss_pred CCcccccccc--cc----------------------------------------------CCCCCEEECCCCCCCC-CCH
Confidence 9999865221 11 2345899999999996 555
Q ss_pred cccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccc-ccCCCCCCCCCCCCEEEcc
Q 042359 811 EVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLS-GEIPESMSSLTFLNHLNLS 872 (979)
Q Consensus 811 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls 872 (979)
.++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 59999999999999999995 8889999999999999999999 7788889999888888886
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=5.7e-26 Score=272.06 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=53.7
Q ss_pred CCcccEEeccCccccccCCccccC-CCCCCEEEccCCcccccCCccc-CCCCCccEEEcCCccccccccc-cccCCCCCC
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMS-YQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGNILV-SLKNCTALE 676 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~ 676 (979)
+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 45566666654 444333333333 5566666666666554333333 3456666666666666443332 233456666
Q ss_pred EEeccCCcccccCChhHHHhhhccceeeccCC
Q 042359 677 SLDVGENEFVGNIPTWIGERFSRMVVLILRSN 708 (979)
Q Consensus 677 ~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n 708 (979)
+|++++|+++..-...+...+++++...+..+
T Consensus 510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 66666666543322333233455544444433
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=5.7e-26 Score=272.05 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=68.2
Q ss_pred hhhcCCCCCCEEECCCCCCC-CCCCC-Cccccc----CCccccCCCCCCEEeccCCcCcccCchhhc-cCCCCCEEeccC
Q 042359 241 LATANFSSLTVLDLSDNQFD-KWFIP-SWVFGP----IPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFIHLEYLSLSN 313 (979)
Q Consensus 241 ~~l~~l~~L~~L~Ls~n~l~-~~~~~-~~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~ 313 (979)
..+..+++|++|+++++... ++.+. ....+. ++.....+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 45677888999999887532 11100 000000 011123566777777777777665555554 567777777777
Q ss_pred C-cCccccCcccccccCccCEEecCCCCCCcccCccccc----CCCCCCeeeccCcc
Q 042359 314 N-SLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA----SLCNLKSLNLRGVH 365 (979)
Q Consensus 314 n-~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~----~l~~L~~L~L~~n~ 365 (979)
| .++....+..+.++++|++|++++| .+.+..+..+. .+++|++|++++|.
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 7 3332111333446677777777777 45544333332 44566666666554
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.4e-22 Score=215.62 Aligned_cols=214 Identities=25% Similarity=0.312 Sum_probs=129.5
Q ss_pred CCCccccceeccCCCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCC
Q 042359 69 GDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMG 148 (979)
Q Consensus 69 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~ 148 (979)
.++|.|.|+.|.- .+.++.+++++. .++ .+|..+. +++++|+|++|.++.+ .+..|+.++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~---------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~ 61 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK---------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLT 61 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS---------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCT
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC---------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCC
Confidence 5799999999952 344567777762 444 3555443 5788888888888875 355788888
Q ss_pred CCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEE
Q 042359 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVEL 228 (979)
Q Consensus 149 ~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 228 (979)
+|++|++++|.++...+..|.++++|++|++++|.+..++.. .+..+++|++|
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------------~~~~l~~L~~L 114 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG---------------------------VFDQLVNLAEL 114 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT---------------------------TTTTCSSCCEE
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh---------------------------HcccccCCCEE
Confidence 888888888888765555667778888888877776554431 22344455555
Q ss_pred EccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCE
Q 042359 229 RLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEY 308 (979)
Q Consensus 229 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 308 (979)
++++|+++++.+..+..+++|++|++++|.++. ..+..+..+++|++|++++|.+++..+..+.++++|++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc---------cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 555555555555555555555555555555542 12223455555555555555555444444555555555
Q ss_pred EeccCCcCccccCcccccccCccCEEecCCC
Q 042359 309 LSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339 (979)
Q Consensus 309 L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n 339 (979)
|++++|.++ .+++..+..+++|+.|++++|
T Consensus 186 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 186 LKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp EECCSSCCS-CCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCC-cCCHHHhccccCCCEEEecCC
Confidence 555555554 232344455555555555555
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9e-23 Score=217.16 Aligned_cols=205 Identities=20% Similarity=0.238 Sum_probs=141.0
Q ss_pred CCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeecc
Q 042359 627 LKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR 706 (979)
Q Consensus 627 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~ 706 (979)
.+.++++++.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|.++ .+|..++..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 344444444444 3443332 34555555555555444444555555555555555554 3443333245556666666
Q ss_pred CCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccch
Q 042359 707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVD 786 (979)
Q Consensus 707 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (979)
+|++++..+..+..+++|+.|++++|++++..|..+.+++.|
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------------- 135 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-------------------------------------- 135 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------------------------------
Confidence 666655555556777778888888888776666556555554
Q ss_pred hhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCC
Q 042359 787 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFL 866 (979)
Q Consensus 787 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L 866 (979)
+.|+|++|++++..+..++.+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|
T Consensus 136 --------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 136 --------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp --------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred --------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 788888888886666668899999999999999997777789999999999999999997777778999999
Q ss_pred CEEEccCCcccccCC
Q 042359 867 NHLNLSNNNLTGKIP 881 (979)
Q Consensus 867 ~~L~ls~N~l~g~ip 881 (979)
+.|++++|++.+..+
T Consensus 208 ~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 208 KMLQLQENPWDCTCN 222 (270)
T ss_dssp CEEECCSSCBCCSSS
T ss_pred CEEEecCCCeeCCCc
Confidence 999999999987655
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=8.6e-23 Score=218.36 Aligned_cols=213 Identities=21% Similarity=0.172 Sum_probs=161.8
Q ss_pred CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV 680 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 680 (979)
++|++|++++|++.+..+..+.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666555556777777777777777777666667777777777777777777766677777777888888
Q ss_pred cCCcccccCChhHHHhhhccceeeccCCcccCC-CCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGP-LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ 759 (979)
Q Consensus 681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 759 (979)
++|.+.+..+..+. .+++|+.|++++|++++. +|..+..+++|+.|++++|++++..+..+..++.+..+.
T Consensus 108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~------- 179 (276)
T 2z62_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN------- 179 (276)
T ss_dssp TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC-------
T ss_pred CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc-------
Confidence 77777754443444 677888888888888763 688888999999999999999887777777776662110
Q ss_pred ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359 760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839 (979)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 839 (979)
..|++++|++++..+..+ ...+|+.|+|++|++++..+..++.+
T Consensus 180 -----------------------------------l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 180 -----------------------------------LSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp -----------------------------------EEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred -----------------------------------eeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhccc
Confidence 279999999996555544 45589999999999997777778999
Q ss_pred CCCCEEECcCCcccccCC
Q 042359 840 RSLESIDFSANQLSGEIP 857 (979)
Q Consensus 840 ~~L~~LdLs~N~l~~~ip 857 (979)
++|+.|+|++|++++..|
T Consensus 224 ~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSCCEEECCSSCBCCCTT
T ss_pred ccccEEEccCCcccccCC
Confidence 999999999999997554
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.7e-23 Score=222.88 Aligned_cols=223 Identities=18% Similarity=0.196 Sum_probs=172.1
Q ss_pred CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV 680 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 680 (979)
..+..+++..+.+.+.. ....+++|+.|++++|.++ .++ .+..+++|++|++++|++++. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 34445556666555432 2445677888888888776 333 467778888888888887752 36778888888888
Q ss_pred cCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccc
Q 042359 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQ 760 (979)
Q Consensus 681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 760 (979)
++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|
T Consensus 93 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------ 159 (272)
T 3rfs_A 93 TGNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------ 159 (272)
T ss_dssp TTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC------------
Confidence 88888754444444 67888888888888887777778888999999999998886666656665555
Q ss_pred cCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccC
Q 042359 761 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR 840 (979)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 840 (979)
+.|++++|++++..|..++.+++|+.|++++|++++..|..++.++
T Consensus 160 ----------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 160 ----------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ----------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence 7899999999977777789999999999999999988888889999
Q ss_pred CCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCC
Q 042359 841 SLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS 883 (979)
Q Consensus 841 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 883 (979)
+|+.|+|++|.+.+.. +.|+.++++.|.++|.+|..
T Consensus 206 ~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 206 SLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred CCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 9999999999988654 46888999999999999864
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.8e-22 Score=215.09 Aligned_cols=204 Identities=21% Similarity=0.244 Sum_probs=140.9
Q ss_pred cCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccc
Q 042359 622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMV 701 (979)
Q Consensus 622 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ 701 (979)
.++++++++++++|.++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+++ +|.. . .+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~-~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-G-TLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-S-CCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-C-CCCcCC
Confidence 34445555555555554 3443332 455555555555555555555566666666666666553 2222 1 456666
Q ss_pred eeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeec
Q 042359 702 VLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSK 781 (979)
Q Consensus 702 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (979)
.|++++|+++ .+|..+..+++|+.|++++|++++..|..+.++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------- 126 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------- 126 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC---------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC---------------------------------
Confidence 6666666666 566667777888888888888876656666665555
Q ss_pred CccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCC
Q 042359 782 GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMS 861 (979)
Q Consensus 782 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~ 861 (979)
+.|+|++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+.
T Consensus 127 -------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~ 192 (290)
T 1p9a_G 127 -------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192 (290)
T ss_dssp -------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred -------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence 77888888888766677788888999999999998655566788899999999999988 6788888
Q ss_pred CCCCCCEEEccCCccccc
Q 042359 862 SLTFLNHLNLSNNNLTGK 879 (979)
Q Consensus 862 ~l~~L~~L~ls~N~l~g~ 879 (979)
.+++|+.+++++|++.+.
T Consensus 193 ~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTCCCSEEECCSCCBCCS
T ss_pred ccccCCeEEeCCCCccCc
Confidence 888899999999988764
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=8.2e-25 Score=246.36 Aligned_cols=240 Identities=15% Similarity=0.249 Sum_probs=184.9
Q ss_pred cccCCCcccEEeccCccccccC----CccccCCCCCCEEEccCC---cccccCCccc-------CCCCCccEEEcCCccc
Q 042359 596 RINETKSLNALQLNDNYLNGEL----PDCWMSYQNLKTLKLSNN---KFTGNLPYSM-------GSLTSLVWLHLGENRL 661 (979)
Q Consensus 596 ~l~~~~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~l~~L~~L~L~~n~l 661 (979)
.+..+++|+.|++++|.+.+.. +..+..+++|++|++++| ++++.+|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 3444677888888888777553 334667788888888875 4455556544 6788899999999998
Q ss_pred cc----cccccccCCCCCCEEeccCCcccccCChhHHH---hh---------hccceeeccCCccc-CCCC---ccccCC
Q 042359 662 SG----NILVSLKNCTALESLDVGENEFVGNIPTWIGE---RF---------SRMVVLILRSNKFH-GPLP---TGLCDL 721 (979)
Q Consensus 662 ~~----~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~---~l---------~~L~~L~L~~n~l~-~~~p---~~l~~l 721 (979)
++ .+|..+..+++|++|+|++|.+++..+..+.. .+ ++|+.|++++|+++ +.+| ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 87 47778888899999999999887544444432 23 78999999999987 4444 467788
Q ss_pred CCccEEEccCCcccc-----ccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeE
Q 042359 722 AFLQILDIADNNLSG-----AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRM 796 (979)
Q Consensus 722 ~~L~~L~Ls~n~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 796 (979)
++|+.|++++|+++. .+|..+..++ .|+.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~----------------------------------------------~L~~ 220 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ----------------------------------------------ELKV 220 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCT----------------------------------------------TCCE
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCC----------------------------------------------CccE
Confidence 899999999998862 2232344333 4489
Q ss_pred EecccCccc----ccccccccCCCCCCEEeCCCCcceec----cCCCC--CccCCCCEEECcCCcccc----cCCCCC-C
Q 042359 797 IDISRNNFS----GKIPLEVTNLKALQSLNFSYNSFTGR----IPESI--GVMRSLESIDFSANQLSG----EIPESM-S 861 (979)
Q Consensus 797 LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~--~~l~~L~~LdLs~N~l~~----~ip~~l-~ 861 (979)
|+|++|.++ +.+|..+..+++|+.|+|++|++++. +|..+ +.+++|+.|+|++|++++ .+|..+ .
T Consensus 221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 999999996 67899999999999999999999876 56666 448999999999999998 588887 6
Q ss_pred CCCCCCEEEccCCcccccCC
Q 042359 862 SLTFLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 862 ~l~~L~~L~ls~N~l~g~ip 881 (979)
++++|++|++++|++++..|
T Consensus 301 ~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HCTTCCEEECTTSBSCTTSH
T ss_pred cCCCceEEEccCCcCCcchh
Confidence 68999999999999998765
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.1e-22 Score=216.79 Aligned_cols=207 Identities=19% Similarity=0.219 Sum_probs=172.3
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 679 (979)
+++|+.|++++|.+.. + ..+..+++|++|++++|++++ + ..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 6778888888887763 2 357778888888888888875 3 3678888899999999988877777788889999999
Q ss_pred ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ 759 (979)
Q Consensus 680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 759 (979)
+++|++++..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|
T Consensus 116 L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 183 (272)
T 3rfs_A 116 LVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL----------- 183 (272)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred CCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC-----------
Confidence 999998854444444 68899999999999987777778899999999999999987766666666655
Q ss_pred ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359 760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839 (979)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 839 (979)
+.|+|++|++++..|..++.+++|+.|+|++|.+.+..
T Consensus 184 -----------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~------- 221 (272)
T 3rfs_A 184 -----------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC------- 221 (272)
T ss_dssp -----------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------
T ss_pred -----------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------
Confidence 88999999999888888999999999999999998654
Q ss_pred CCCCEEECcCCcccccCCCCCCCCC
Q 042359 840 RSLESIDFSANQLSGEIPESMSSLT 864 (979)
Q Consensus 840 ~~L~~LdLs~N~l~~~ip~~l~~l~ 864 (979)
++|+.|+++.|+++|.+|.+++.+.
T Consensus 222 ~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cHHHHHHHHHHhCCCcccCcccccC
Confidence 4689999999999999999988765
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.2e-23 Score=234.32 Aligned_cols=256 Identities=16% Similarity=0.176 Sum_probs=149.7
Q ss_pred EEcccccccccCChhhhhcccCCCcccEEeccCccccccCC----ccccCCC-CCCEEEccCCcccccCCcccCCC----
Q 042359 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP----DCWMSYQ-NLKTLKLSNNKFTGNLPYSMGSL---- 648 (979)
Q Consensus 578 L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l---- 648 (979)
+++++|.+++.+|.... ..++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS----IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHT----SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHh----CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 34555555554444332 13446666666666554444 4455555 56666666666665544444443
Q ss_pred -CCccEEEcCCcccccccccc----ccCC-CCCCEEeccCCcccccCChhHHHh----hhccceeeccCCcccCCC----
Q 042359 649 -TSLVWLHLGENRLSGNILVS----LKNC-TALESLDVGENEFVGNIPTWIGER----FSRMVVLILRSNKFHGPL---- 714 (979)
Q Consensus 649 -~~L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~L~~N~l~~~ip~~~~~~----l~~L~~L~L~~n~l~~~~---- 714 (979)
++|++|++++|++++..+.. +..+ ++|++|++++|++++..+..+... .++|+.|++++|++++..
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 66666666666666554443 2333 566666666666665444443322 246667777777666433
Q ss_pred CccccCCC-CccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhc-c
Q 042359 715 PTGLCDLA-FLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL-N 792 (979)
Q Consensus 715 p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 792 (979)
+..+..++ +|+.|++++|++++..+..+...- ... +
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------------------~~~~~ 196 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------------------ASIPA 196 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------------------HTSCT
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------------------HhCCC
Confidence 23334444 777777777777665554443210 001 2
Q ss_pred ceeEEecccCccccc----ccccccC-CCCCCEEeCCCCcceeccC----CCCCccCCCCEEECcCCccccc-------C
Q 042359 793 LVRMIDISRNNFSGK----IPLEVTN-LKALQSLNFSYNSFTGRIP----ESIGVMRSLESIDFSANQLSGE-------I 856 (979)
Q Consensus 793 ~L~~LdLs~N~l~~~----ip~~l~~-l~~L~~L~Ls~N~l~~~ip----~~~~~l~~L~~LdLs~N~l~~~-------i 856 (979)
.|+.|||++|++++. ++..+.. .++|+.|||++|++++..+ ..+..+++|+.|+|++|.+.+. +
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 347778888877752 4555555 3478888888888875433 3456667788888888874432 3
Q ss_pred CCCCCCCCCCCEEEccCCccccc
Q 042359 857 PESMSSLTFLNHLNLSNNNLTGK 879 (979)
Q Consensus 857 p~~l~~l~~L~~L~ls~N~l~g~ 879 (979)
+..+..+++|+.||+++|++.+.
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 44667777888888888887755
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.1e-21 Score=210.37 Aligned_cols=204 Identities=20% Similarity=0.179 Sum_probs=173.4
Q ss_pred cCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCE
Q 042359 598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALES 677 (979)
Q Consensus 598 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 677 (979)
+.+++++++++++|.++ .+|..+. ++++.|++++|++++..|..|..+++|++|++++|.+++..+ ...+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 45778888888888887 5665554 688999999999988778889999999999999999986433 278899999
Q ss_pred EeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccc
Q 042359 678 LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRS 757 (979)
Q Consensus 678 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~ 757 (979)
|++++|+++ .+|..+. .+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..++.|
T Consensus 82 L~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------- 150 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL--------- 150 (290)
T ss_dssp EECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC---------
T ss_pred EECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC---------
Confidence 999999997 7887665 78999999999999998777889999999999999999986666556655555
Q ss_pred ccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCC
Q 042359 758 VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIG 837 (979)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 837 (979)
+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+.
T Consensus 151 -------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~ 192 (290)
T 1p9a_G 151 -------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192 (290)
T ss_dssp -------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred -------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence 89999999999666667789999999999999999 8899999
Q ss_pred ccCCCCEEECcCCccccc
Q 042359 838 VMRSLESIDFSANQLSGE 855 (979)
Q Consensus 838 ~l~~L~~LdLs~N~l~~~ 855 (979)
.+.+|+.|+|++|.+...
T Consensus 193 ~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTCCCSEEECCSCCBCCS
T ss_pred ccccCCeEEeCCCCccCc
Confidence 999999999999998753
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1e-22 Score=221.56 Aligned_cols=231 Identities=18% Similarity=0.225 Sum_probs=157.5
Q ss_pred CCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccc--cCCCCCCEEEccCCcccccCC----cccCC
Q 042359 574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW--MSYQNLKTLKLSNNKFTGNLP----YSMGS 647 (979)
Q Consensus 574 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~ 647 (979)
.++.+.+.++.+....-..+.. ...+++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3556666665554221111111 1123568888888888887777776 778888888888888876544 23446
Q ss_pred CCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEE
Q 042359 648 LTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQIL 727 (979)
Q Consensus 648 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 727 (979)
+++|++|++++|++++..+..+.++++|++|++++|++.+... + ..+..+..+++|++|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~-------------------~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG--L-------------------MAALCPHKFPAIQNL 202 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH--H-------------------HTTSCTTSSCCCCSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh--h-------------------hHHHhhhcCCCCCEE
Confidence 7788888888888877777777777888888888777653200 0 001122455667777
Q ss_pred EccCCccccccCcc----hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCc
Q 042359 728 DIADNNLSGAIPNC----INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN 803 (979)
Q Consensus 728 ~Ls~n~l~~~~p~~----~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 803 (979)
++++|+++ .+|.. ++++ +.|+.|||++|+
T Consensus 203 ~Ls~N~l~-~l~~~~~~l~~~l----------------------------------------------~~L~~L~Ls~N~ 235 (310)
T 4glp_A 203 ALRNTGME-TPTGVCAALAAAG----------------------------------------------VQPHSLDLSHNS 235 (310)
T ss_dssp BCCSSCCC-CHHHHHHHHHHHT----------------------------------------------CCCSSEECTTSC
T ss_pred ECCCCCCC-chHHHHHHHHhcC----------------------------------------------CCCCEEECCCCC
Confidence 77777764 22221 2222 334788888888
Q ss_pred ccccccccccCC---CCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359 804 FSGKIPLEVTNL---KALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG 878 (979)
Q Consensus 804 l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 878 (979)
+++.+|..++.+ ++|++|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 236 LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 888778877777 58999999999999 7888775 7999999999999864 43 6778899999999998874
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.2e-23 Score=230.77 Aligned_cols=244 Identities=20% Similarity=0.218 Sum_probs=178.0
Q ss_pred CCCCcEEEcccccccccCChhhhhcccCCC-cccEEeccCccccccCCccccCC-----CCCCEEEccCCcccccCCccc
Q 042359 572 SSNLVFLDLSNNLFSGSISPFLCYRINETK-SLNALQLNDNYLNGELPDCWMSY-----QNLKTLKLSNNKFTGNLPYSM 645 (979)
Q Consensus 572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l 645 (979)
+.+|++|++++|.+++..+..++..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 355888888888888777666666666677 88888888888887766666654 889999999998886665533
Q ss_pred ----CCC-CCccEEEcCCccccccccccc----cC-CCCCCEEeccCCcccccCChhHHH---hh-hccceeeccCCccc
Q 042359 646 ----GSL-TSLVWLHLGENRLSGNILVSL----KN-CTALESLDVGENEFVGNIPTWIGE---RF-SRMVVLILRSNKFH 711 (979)
Q Consensus 646 ----~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~L~~N~l~~~ip~~~~~---~l-~~L~~L~L~~n~l~ 711 (979)
..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++..+..+.. .. ++|+.|++++|+++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 334 789999999999887666543 33 468999999999888644433322 23 38999999999998
Q ss_pred CCCCcccc----CC-CCccEEEccCCccccc----cCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecC
Q 042359 712 GPLPTGLC----DL-AFLQILDIADNNLSGA----IPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKG 782 (979)
Q Consensus 712 ~~~p~~l~----~l-~~L~~L~Ls~n~l~~~----~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (979)
+..+..+. .+ ++|+.|++++|++++. ++..+..
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-------------------------------------- 222 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS-------------------------------------- 222 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH--------------------------------------
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc--------------------------------------
Confidence 77665443 44 5899999999998753 2222221
Q ss_pred ccchhhhhccceeEEecccCccccccc----ccccCCCCCCEEeCCCCccee-------ccCCCCCccCCCCEEECcCCc
Q 042359 783 EMVDYEDILNLVRMIDISRNNFSGKIP----LEVTNLKALQSLNFSYNSFTG-------RIPESIGVMRSLESIDFSANQ 851 (979)
Q Consensus 783 ~~~~~~~~~~~L~~LdLs~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~-------~ip~~~~~l~~L~~LdLs~N~ 851 (979)
..+.|+.|||++|++++..+ ..+..+++|+.|+|++|.+.+ .++..+..+++|+.||+++|+
T Consensus 223 -------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 223 -------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 12346899999999987554 345778899999999998442 355678889999999999999
Q ss_pred ccccCCCCC
Q 042359 852 LSGEIPESM 860 (979)
Q Consensus 852 l~~~ip~~l 860 (979)
+.+..|..+
T Consensus 296 l~~~~~~~~ 304 (362)
T 3goz_A 296 IHPSHSIPI 304 (362)
T ss_dssp CCGGGCHHH
T ss_pred CCCcchHHH
Confidence 987755443
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=7.3e-22 Score=207.65 Aligned_cols=212 Identities=18% Similarity=0.211 Sum_probs=143.2
Q ss_pred CCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeec
Q 042359 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL 705 (979)
Q Consensus 626 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L 705 (979)
+.++++++++.++ .+|..+. ++++.|++++|++++..+..+.++++|++|++++|.++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 72 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------- 72 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence 4566777777776 5565443 46666666666666655555665566655555555554
Q ss_pred cCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccc
Q 042359 706 RSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMV 785 (979)
Q Consensus 706 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (979)
+..|..+..+++|+.|++++|++++..|..+..++.|
T Consensus 73 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------------------------------- 109 (251)
T 3m19_A 73 ------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL------------------------------------- 109 (251)
T ss_dssp ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred ------ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence 4444455666677777777777765555555554444
Q ss_pred hhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCC
Q 042359 786 DYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF 865 (979)
Q Consensus 786 ~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 865 (979)
+.|+|++|++++..+..++.+++|+.|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++
T Consensus 110 ---------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 110 ---------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp ---------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ---------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 67788888888666666788999999999999999777778999999999999999999888888999999
Q ss_pred CCEEEccCCcccccCCCCccCC------CccccccCCCCCCCCCCCCCCCCC
Q 042359 866 LNHLNLSNNNLTGKIPSSTQLQ------SFDVSSFAGNDLCGAPLPKNCTEN 911 (979)
Q Consensus 866 L~~L~ls~N~l~g~ip~~~~~~------~~~~~~~~~n~lcg~~~~~~c~~~ 911 (979)
|++|++++|++++..+....+. ........++.+|+.|....|...
T Consensus 181 L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 181 LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp CCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 9999999999998744322111 112223456677877777778644
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.2e-22 Score=224.32 Aligned_cols=251 Identities=18% Similarity=0.222 Sum_probs=194.9
Q ss_pred CCCcEEEcccccccccCChhhhhcccCC--CcccEEeccCccccccCCccccCCCCCCEEEccCCccccc-CCcccCCCC
Q 042359 573 SNLVFLDLSNNLFSGSISPFLCYRINET--KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN-LPYSMGSLT 649 (979)
Q Consensus 573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~ 649 (979)
..++.+++++|.+.. ..+. .+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..++
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~----~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTG----RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHH----HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred hhheeeccccccCCH---HHHH----hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 346788888887662 2222 23 7899999999999877665 55789999999999998866 777888999
Q ss_pred CccEEEcCCccccccccccccCCCCCCEEeccCC-ccccc-CChhHHHhhhccceeeccCC-cccCC-CCccccCCC-Cc
Q 042359 650 SLVWLHLGENRLSGNILVSLKNCTALESLDVGEN-EFVGN-IPTWIGERFSRMVVLILRSN-KFHGP-LPTGLCDLA-FL 724 (979)
Q Consensus 650 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-ip~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L 724 (979)
+|++|++++|.+++..+..+..+++|++|++++| .+++. +|..+. .+++|+.|++++| .+++. ++..+..++ +|
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 9999999999999888888999999999999999 67753 555555 7899999999999 88864 567788888 99
Q ss_pred cEEEccCC--ccc-cccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEeccc
Q 042359 725 QILDIADN--NLS-GAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR 801 (979)
Q Consensus 725 ~~L~Ls~n--~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~ 801 (979)
+.|++++| .++ +.+|..+.++++| +.|+|++
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L----------------------------------------------~~L~l~~ 231 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNL----------------------------------------------VHLDLSD 231 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTC----------------------------------------------SEEECTT
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCC----------------------------------------------CEEeCCC
Confidence 99999999 454 4455555554444 8899999
Q ss_pred Cc-ccccccccccCCCCCCEEeCCCCc-ceeccCCCCCccCCCCEEECcCCcccccCCCCCCCC-CCCCEEEccCCcccc
Q 042359 802 NN-FSGKIPLEVTNLKALQSLNFSYNS-FTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSL-TFLNHLNLSNNNLTG 878 (979)
Q Consensus 802 N~-l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g 878 (979)
|. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++. +.+..+ ..+..|++++|+++|
T Consensus 232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCC
T ss_pred CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCcc
Confidence 99 777888889999999999999995 33222235788899999999998 332 233444 346777889999998
Q ss_pred cCCC
Q 042359 879 KIPS 882 (979)
Q Consensus 879 ~ip~ 882 (979)
..|.
T Consensus 308 ~~~~ 311 (336)
T 2ast_B 308 IARP 311 (336)
T ss_dssp TTCS
T ss_pred ccCC
Confidence 8775
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.8e-23 Score=233.83 Aligned_cols=239 Identities=21% Similarity=0.290 Sum_probs=192.3
Q ss_pred CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCc---cccccCCccc-------cCCCCCCEEEccCCcccc--
Q 042359 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDN---YLNGELPDCW-------MSYQNLKTLKLSNNKFTG-- 639 (979)
Q Consensus 572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~-- 639 (979)
.++|++|++++|.+.+..+..++..+..+++|+.|+|++| ++.+.+|..+ ..+++|++|++++|.+++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3567888888888877766666666777899999999886 4555666555 678999999999999986
Q ss_pred --cCCcccCCCCCccEEEcCCccccccccccc----cCC---------CCCCEEeccCCccc-ccCC---hhHHHhhhcc
Q 042359 640 --NLPYSMGSLTSLVWLHLGENRLSGNILVSL----KNC---------TALESLDVGENEFV-GNIP---TWIGERFSRM 700 (979)
Q Consensus 640 --~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~L~~N~l~-~~ip---~~~~~~l~~L 700 (979)
.+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|++++|+++ +.+| ..+. .+++|
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L 189 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLL 189 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCc
Confidence 467788889999999999999975544433 334 89999999999997 4455 2343 68899
Q ss_pred ceeeccCCcccC-----CCCccccCCCCccEEEccCCccc----cccCcchhhcccCcccccccccccccCCCCccccee
Q 042359 701 VVLILRSNKFHG-----PLPTGLCDLAFLQILDIADNNLS----GAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVI 771 (979)
Q Consensus 701 ~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 771 (979)
+.|++++|+++. ..|..+..+++|+.|++++|.++ +.+|..+..++.|
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L----------------------- 246 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL----------------------- 246 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC-----------------------
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc-----------------------
Confidence 999999999873 34558889999999999999996 5667666655554
Q ss_pred eeeeeEEeecCccchhhhhccceeEEecccCccccc----ccccc--cCCCCCCEEeCCCCccee----ccCCCC-CccC
Q 042359 772 LVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK----IPLEV--TNLKALQSLNFSYNSFTG----RIPESI-GVMR 840 (979)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~----ip~~l--~~l~~L~~L~Ls~N~l~~----~ip~~~-~~l~ 840 (979)
+.|+|++|.+++. +|..+ +.+++|+.|+|++|.+++ .+|..+ .+++
T Consensus 247 -----------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 247 -----------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp -----------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred -----------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 8999999999876 67777 449999999999999998 588887 6689
Q ss_pred CCCEEECcCCcccccCC
Q 042359 841 SLESIDFSANQLSGEIP 857 (979)
Q Consensus 841 ~L~~LdLs~N~l~~~ip 857 (979)
+|++|+|++|++++..|
T Consensus 304 ~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 304 DLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTSBSCTTSH
T ss_pred CceEEEccCCcCCcchh
Confidence 99999999999998764
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.4e-21 Score=199.51 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=105.0
Q ss_pred CCCEEEccCCcccccCCcccCCCCCccEEEcCCcc-ccccccccccCCCCCCEEeccC-CcccccCChhHHHhhhcccee
Q 042359 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENR-LSGNILVSLKNCTALESLDVGE-NEFVGNIPTWIGERFSRMVVL 703 (979)
Q Consensus 626 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~ip~~~~~~l~~L~~L 703 (979)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..+. .+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-CCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEE
Confidence 45555555555554444455555555555555554 4443344555555555555555 555422222222 34455555
Q ss_pred eccCCcccCCCCccccCCCCcc---EEEccCC-ccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359 704 ILRSNKFHGPLPTGLCDLAFLQ---ILDIADN-NLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV 779 (979)
Q Consensus 704 ~L~~n~l~~~~p~~l~~l~~L~---~L~Ls~n-~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (979)
++++|++++ +|. +..+++|+ .|++++| ++++..+..+.+++.|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------- 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------- 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence 555555543 333 44555555 6666666 5554444444444443
Q ss_pred ecCccchhhhhcccee-EEecccCcccccccccccCCCCCCEEeCCCCc-ceeccCCCCCcc-CCCCEEECcCCcccccC
Q 042359 780 SKGEMVDYEDILNLVR-MIDISRNNFSGKIPLEVTNLKALQSLNFSYNS-FTGRIPESIGVM-RSLESIDFSANQLSGEI 856 (979)
Q Consensus 780 ~~~~~~~~~~~~~~L~-~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l-~~L~~LdLs~N~l~~~i 856 (979)
+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|+.||+++|++++ +
T Consensus 158 ---------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l 220 (239)
T 2xwt_C 158 ---------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L 220 (239)
T ss_dssp ---------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred ---------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence 5 5666666666 444433333666666776663 665555566666 667777777776663 3
Q ss_pred CCCCCCCCCCCEEEccCC
Q 042359 857 PESMSSLTFLNHLNLSNN 874 (979)
Q Consensus 857 p~~l~~l~~L~~L~ls~N 874 (979)
|.. .+++|+.|+++++
T Consensus 221 ~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 221 PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCT--TCTTCSEEECTTC
T ss_pred Chh--HhccCceeeccCc
Confidence 332 4556666666654
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=3.3e-22 Score=220.71 Aligned_cols=234 Identities=14% Similarity=0.222 Sum_probs=178.7
Q ss_pred CCCcEEEcccccccccCChhhhhcccCCCcccEEeccCcccccc-CCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE-LPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL 651 (979)
Q Consensus 573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 651 (979)
.+++.+++++|.+.+..+. +..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 4667777777777666554 23478888888888888765 77778888899999999998887778888888999
Q ss_pred cEEEcCCc-ccccc-ccccccCCCCCCEEeccCC-ccccc-CChhHHHhhh-ccceeeccCC--ccc-CCCCccccCCCC
Q 042359 652 VWLHLGEN-RLSGN-ILVSLKNCTALESLDVGEN-EFVGN-IPTWIGERFS-RMVVLILRSN--KFH-GPLPTGLCDLAF 723 (979)
Q Consensus 652 ~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-ip~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~ 723 (979)
++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+. .++ +|+.|++++| .++ +.+|..+..+++
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence 99999998 67753 6666888899999999999 88754 555555 688 9999999998 455 456777778899
Q ss_pred ccEEEccCCc-cccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccC
Q 042359 724 LQILDIADNN-LSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 802 (979)
Q Consensus 724 L~~L~Ls~n~-l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N 802 (979)
|+.|++++|. +++..+..+.+++.| +.|+|++|
T Consensus 224 L~~L~l~~~~~l~~~~~~~l~~l~~L----------------------------------------------~~L~l~~~ 257 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQEFFQLNYL----------------------------------------------QHLSLSRC 257 (336)
T ss_dssp CSEEECTTCTTCCGGGGGGGGGCTTC----------------------------------------------CEEECTTC
T ss_pred CCEEeCCCCCcCCHHHHHHHhCCCCC----------------------------------------------CEeeCCCC
Confidence 9999999998 676666666655554 88999998
Q ss_pred c-ccccccccccCCCCCCEEeCCCCcceeccCCCCCcc-CCCCEEECcCCcccccCCCCCCC
Q 042359 803 N-FSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM-RSLESIDFSANQLSGEIPESMSS 862 (979)
Q Consensus 803 ~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~ 862 (979)
. ++......++++++|+.|++++| ++ .+.+..+ .+++.|++++|++++..|..++.
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 5 33222236788999999999998 33 2245555 34888889999999999987764
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=9.7e-21 Score=205.28 Aligned_cols=193 Identities=23% Similarity=0.352 Sum_probs=132.6
Q ss_pred CCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccce
Q 042359 623 SYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVV 702 (979)
Q Consensus 623 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~ 702 (979)
.+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ +..+++|++|++++|++++ +| .+. .+++|+.
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~-~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIA-GLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGT-TCTTCCE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhc-CCCCCCE
Confidence 4555666666666665 233 45556666666666666664333 6666666666666666653 33 233 5667777
Q ss_pred eeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecC
Q 042359 703 LILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKG 782 (979)
Q Consensus 703 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (979)
|++++|++++. | .+..+++|+.|++++|++++..+ +..++.
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~----------------------------------- 152 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN----------------------------------- 152 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT-----------------------------------
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC-----------------------------------
Confidence 77777776653 3 26777888888888888764332 443333
Q ss_pred ccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCC
Q 042359 783 EMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSS 862 (979)
Q Consensus 783 ~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~ 862 (979)
|+.|+|++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|+|++|++++..| +..
T Consensus 153 -----------L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~ 215 (308)
T 1h6u_A 153 -----------LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN 215 (308)
T ss_dssp -----------CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred -----------ccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence 3788888888885433 8888889999999998885444 7888889999999999886553 788
Q ss_pred CCCCCEEEccCCcccc
Q 042359 863 LTFLNHLNLSNNNLTG 878 (979)
Q Consensus 863 l~~L~~L~ls~N~l~g 878 (979)
+++|++|++++|++++
T Consensus 216 l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCeeec
Confidence 8889999999998876
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.4e-21 Score=209.49 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=113.2
Q ss_pred CCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCC----ccccCCCCCCEEEccCCcccccCCcccCCC
Q 042359 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP----DCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648 (979)
Q Consensus 573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 648 (979)
++|++|++++|.+.+..|..+.. ..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45788888888887777654311 457889999999999887655 334578899999999999998888899999
Q ss_pred CCccEEEcCCcccccc--cc--ccccCCCCCCEEeccCCcccccCCh---hHHHhhhccceeeccCCcccCCCCccccCC
Q 042359 649 TSLVWLHLGENRLSGN--IL--VSLKNCTALESLDVGENEFVGNIPT---WIGERFSRMVVLILRSNKFHGPLPTGLCDL 721 (979)
Q Consensus 649 ~~L~~L~L~~n~l~~~--~p--~~l~~l~~L~~L~L~~N~l~~~ip~---~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 721 (979)
++|++|++++|++.+. ++ ..+..+++|++|++++|+++ .+|. ++...+++|++|++++|++++..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 9999999999998753 22 33468889999999999986 2332 233345666666666666666555555444
Q ss_pred ---CCccEEEccCCccc
Q 042359 722 ---AFLQILDIADNNLS 735 (979)
Q Consensus 722 ---~~L~~L~Ls~n~l~ 735 (979)
++|+.|++++|+++
T Consensus 248 ~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCTTCCCEECCSSCCC
T ss_pred cCcCcCCEEECCCCCCC
Confidence 34444444444443
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=9.9e-21 Score=205.19 Aligned_cols=192 Identities=21% Similarity=0.328 Sum_probs=135.9
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 679 (979)
+++|+.|++++|.+.. +| .+..+++|++|++++|++++ ++. +..+++|++|++++|++++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 4567777777776663 33 46667777777777777764 333 77777777777777777652 2577777777777
Q ss_pred ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ 759 (979)
Q Consensus 680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 759 (979)
+++|++++ +|. +. .+++|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..++.|
T Consensus 114 l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L----------- 175 (308)
T 1h6u_A 114 LTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL----------- 175 (308)
T ss_dssp CTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC-----------
T ss_pred CCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC-----------
Confidence 77777764 443 33 57777888888887775433 7777888888888888764322 4444433
Q ss_pred ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359 760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839 (979)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l 839 (979)
+.|++++|++++..| +..+++|+.|+|++|++++..| +..+
T Consensus 176 -----------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l 216 (308)
T 1h6u_A 176 -----------------------------------TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT 216 (308)
T ss_dssp -----------------------------------CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred -----------------------------------CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence 778888888875443 7788888888888888886553 7888
Q ss_pred CCCCEEECcCCcccc
Q 042359 840 RSLESIDFSANQLSG 854 (979)
Q Consensus 840 ~~L~~LdLs~N~l~~ 854 (979)
++|+.|+|++|++++
T Consensus 217 ~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 217 SNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCeeec
Confidence 888888888888875
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3.9e-20 Score=194.43 Aligned_cols=181 Identities=19% Similarity=0.277 Sum_probs=139.1
Q ss_pred CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV 680 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 680 (979)
...+.++++++.+. .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46789999999998 6676665 68999999999999888888999999999999999999988888899999999999
Q ss_pred cCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccc
Q 042359 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQ 760 (979)
Q Consensus 681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 760 (979)
++|++++ +|. ..+..+++|+.|++++|++++..|..+..++.|
T Consensus 91 ~~n~l~~-~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------ 133 (251)
T 3m19_A 91 ANNQLAS-LPL------------------------GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------ 133 (251)
T ss_dssp TTSCCCC-CCT------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCcccc-cCh------------------------hHhcccCCCCEEEcCCCcCCCcChhHhccCCcc------------
Confidence 8888873 332 223344555555555555554333334443333
Q ss_pred cCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccC
Q 042359 761 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR 840 (979)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 840 (979)
+.|+|++|++++..|..++.+++|+.|+|++|++++..|..+..++
T Consensus 134 ----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 134 ----------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ----------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 5667777777755556778888888888888888877777888888
Q ss_pred CCCEEECcCCccccc
Q 042359 841 SLESIDFSANQLSGE 855 (979)
Q Consensus 841 ~L~~LdLs~N~l~~~ 855 (979)
+|+.|+|++|++++.
T Consensus 180 ~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 180 KLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSCCBCTT
T ss_pred CCCEEEeeCCceeCC
Confidence 888888888888876
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.4e-20 Score=196.31 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=148.1
Q ss_pred cccEEeccCccccccCCccccCCCCCCEEEccCCc-ccccCCcccCCCCCccEEEcCC-ccccccccccccCCCCCCEEe
Q 042359 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNK-FTGNLPYSMGSLTSLVWLHLGE-NRLSGNILVSLKNCTALESLD 679 (979)
Q Consensus 602 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 679 (979)
+|+.|++++|++++..+..+.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555567777777777777776 6655555677777888888877 777766666777788888888
Q ss_pred ccCCcccccCChhHHHhhhccc---eeeccCC-cccCCCCccccCCCCcc-EEEccCCccccccCcchhhcccCcccccc
Q 042359 680 VGENEFVGNIPTWIGERFSRMV---VLILRSN-KFHGPLPTGLCDLAFLQ-ILDIADNNLSGAIPNCINNLTGMVTACSF 754 (979)
Q Consensus 680 L~~N~l~~~ip~~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~ 754 (979)
+++|++++ +|. +. .+++|+ .|++++| ++++..+..+..+++|+ .|++++|+++ .+|......+
T Consensus 112 l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~-------- 179 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT-------- 179 (239)
T ss_dssp EEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC--------
T ss_pred CCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC--------
Confidence 88888774 665 33 577777 8888888 88766667788899999 9999999987 5554322112
Q ss_pred cccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCc-ccccccccccCC-CCCCEEeCCCCcceecc
Q 042359 755 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN-FSGKIPLEVTNL-KALQSLNFSYNSFTGRI 832 (979)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~i 832 (979)
.|+.|+|++|+ +++..+..+..+ ++|+.|++++|+++ .+
T Consensus 180 --------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l 220 (239)
T 2xwt_C 180 --------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-AL 220 (239)
T ss_dssp --------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CC
T ss_pred --------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cC
Confidence 34899999995 987667788999 99999999999999 56
Q ss_pred CCCCCccCCCCEEECcCCc
Q 042359 833 PESIGVMRSLESIDFSANQ 851 (979)
Q Consensus 833 p~~~~~l~~L~~LdLs~N~ 851 (979)
|.. .+++|+.|+++++.
T Consensus 221 ~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 221 PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCT--TCTTCSEEECTTC-
T ss_pred Chh--HhccCceeeccCcc
Confidence 654 67899999998763
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=7.4e-20 Score=212.50 Aligned_cols=114 Identities=29% Similarity=0.421 Sum_probs=57.1
Q ss_pred cccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEecc
Q 042359 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVG 681 (979)
Q Consensus 602 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 681 (979)
+++.|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666654 444332 45666666666665 444 234555555555555554 444 333 55555555
Q ss_pred CCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccc
Q 042359 682 ENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735 (979)
Q Consensus 682 ~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 735 (979)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|+++
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 555553 443 23444444444444443 332 2344444444444443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=6.1e-20 Score=213.21 Aligned_cols=181 Identities=23% Similarity=0.375 Sum_probs=100.2
Q ss_pred CCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeec
Q 042359 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL 705 (979)
Q Consensus 626 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L 705 (979)
+|+.|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +. .+|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP---ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh---cCCCEEEC
Confidence 56666666666654 554442 55666666666665 344 335566666666666654 555 32 15666666
Q ss_pred cCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccc
Q 042359 706 RSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMV 785 (979)
Q Consensus 706 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (979)
++|++++ +|. .+++|+.|++++|++++ +|. .++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~--------------------------------------- 160 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT--------------------------------------- 160 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT---------------------------------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC---------------------------------------
Confidence 6666654 444 45566666666666653 443 111
Q ss_pred hhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCC-------CEEECcCCcccccCCC
Q 042359 786 DYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSL-------ESIDFSANQLSGEIPE 858 (979)
Q Consensus 786 ~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L-------~~LdLs~N~l~~~ip~ 858 (979)
.|+.|+|++|++++ +|. +. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|.
T Consensus 161 -------~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~ 224 (571)
T 3cvr_A 161 -------SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE 224 (571)
T ss_dssp -------TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred -------CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence 22556666666664 554 44 56666666666666 5555 443 45 66666666665 4555
Q ss_pred CCCCCCCCCEEEccCCcccccCC
Q 042359 859 SMSSLTFLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 859 ~l~~l~~L~~L~ls~N~l~g~ip 881 (979)
.+..+++|++|+|++|+++|.+|
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCHHHH
T ss_pred HHhcCCCCCEEEeeCCcCCCcCH
Confidence 55556666666666666665554
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=7.3e-19 Score=194.47 Aligned_cols=223 Identities=16% Similarity=0.117 Sum_probs=127.0
Q ss_pred CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCC-cccCCCCCccE-EEcCCccccccccccccCCCCCCEE
Q 042359 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLP-YSMGSLTSLVW-LHLGENRLSGNILVSLKNCTALESL 678 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L 678 (979)
+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.+++|++++..|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 345555555555554334456666666666666666655444 34556665543 4455566666556666666677777
Q ss_pred eccCCcccccCChhHHHhhhccceeeccC-CcccCCCCccccCCC-CccEEEccCCccccccCcchhhcccCcccccccc
Q 042359 679 DVGENEFVGNIPTWIGERFSRMVVLILRS-NKFHGPLPTGLCDLA-FLQILDIADNNLSGAIPNCINNLTGMVTACSFTR 756 (979)
Q Consensus 679 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~ 756 (979)
++++|++.+..+.... ...++..+++.+ +++....+..+..+. .++.|++++|+++ .+|......+
T Consensus 110 ~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~---------- 177 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT---------- 177 (350)
T ss_dssp EEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE----------
T ss_pred cccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcccc----------
Confidence 7776666532222222 344555666644 344433344455543 4677777777776 3443322222
Q ss_pred cccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccc-cccCCCCCCEEeCCCCcceeccCCC
Q 042359 757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL-EVTNLKALQSLNFSYNSFTGRIPES 835 (979)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~ 835 (979)
.++.+++++|+..+.+|. .|+.+++|+.|||++|+|+ .+|..
T Consensus 178 ------------------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~ 220 (350)
T 4ay9_X 178 ------------------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY 220 (350)
T ss_dssp ------------------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS
T ss_pred ------------------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh
Confidence 236677765333335553 5677778888888888877 44442
Q ss_pred CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCc
Q 042359 836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNN 875 (979)
Q Consensus 836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~ 875 (979)
.+.+|+.|.+.++.--..+|. +.++++|+.++++++.
T Consensus 221 --~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 221 --GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp --SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred --hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 234555555555444445663 6777778888877654
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.4e-19 Score=181.41 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=45.7
Q ss_pred eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCC
Q 042359 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN 874 (979)
Q Consensus 795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 874 (979)
+.|+|++|++++..+..++.+++|+.|+|++|++++..+..++.+++|+.|++++|.+.+. ++.|++|+++.|
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n 175 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN 175 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHH
Confidence 4455555555544444455566666666666666654444456666666666666655532 334566666666
Q ss_pred cccccCCC
Q 042359 875 NLTGKIPS 882 (979)
Q Consensus 875 ~l~g~ip~ 882 (979)
+++|.+|.
T Consensus 176 ~~~g~ip~ 183 (208)
T 2o6s_A 176 KHSGVVRN 183 (208)
T ss_dssp HCTTTBBC
T ss_pred hCCceeec
Confidence 66666664
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=8.1e-19 Score=179.81 Aligned_cols=155 Identities=19% Similarity=0.237 Sum_probs=123.9
Q ss_pred EEeccCCcccccCChhHHHhhhccceeeccCCcccCCCC-ccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359 677 SLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT 755 (979)
Q Consensus 677 ~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 755 (979)
.+++++|.++ .+|..+. ..++.|++++|++++..| ..+..+++|+.|++++|++++..|..+.+++.|
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------- 83 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------- 83 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-------
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-------
Confidence 5555555554 3554432 345666666666665544 346778888888888888887666667666655
Q ss_pred ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359 756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES 835 (979)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 835 (979)
+.|+|++|++++..|..|+.+++|++|+|++|++++..|..
T Consensus 84 ---------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 84 ---------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp ---------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred ---------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence 78899999998888888999999999999999999888999
Q ss_pred CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359 836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 881 (979)
|..+++|+.|||++|++++..|..+..+++|++|++++|++++..+
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999999999999999999889999999999999999999998765
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=7.3e-19 Score=178.97 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=46.2
Q ss_pred eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCC
Q 042359 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF 865 (979)
Q Consensus 795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 865 (979)
+.|+|++|++++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|+++|.+|++++.++.
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 6677777777755555577777888888888877643 346778888888888888887777654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=2.1e-18 Score=190.68 Aligned_cols=242 Identities=16% Similarity=0.164 Sum_probs=177.8
Q ss_pred cEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCC-ccccCCCCCCE-EEc
Q 042359 555 LILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP-DCWMSYQNLKT-LKL 632 (979)
Q Consensus 555 ~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L 632 (979)
+.++.+++.++......++++++|++++|+++...+. .+.++++|++|+|++|++.+.+| ..|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3455566666644444567889999999988754433 34568999999999999877666 46788888775 666
Q ss_pred cCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhh-hccceeeccCCccc
Q 042359 633 SNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERF-SRMVVLILRSNKFH 711 (979)
Q Consensus 633 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l-~~L~~L~L~~n~l~ 711 (979)
+.|+++...|..|..+++|++|++++|++++..+..+....++..|++.++.-...+|...+..+ ..++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 77899977788899999999999999999977777777788888999977543335554433234 46888999999998
Q ss_pred CCCCccccCCCCccEEEccCCccccccCc-chhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhh
Q 042359 712 GPLPTGLCDLAFLQILDIADNNLSGAIPN-CINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI 790 (979)
Q Consensus 712 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (979)
.+|.......+|+.+++++|+..+.+|. .|..+++|
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L------------------------------------------ 204 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP------------------------------------------ 204 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC------------------------------------------
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCccc------------------------------------------
Confidence 4566656678899999987555456664 45666655
Q ss_pred ccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCc
Q 042359 791 LNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQ 851 (979)
Q Consensus 791 ~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~ 851 (979)
+.|||++|+|+ .+|.. .+.+|+.|.+.++.--..+|. +.++++|+.++++++.
T Consensus 205 ----~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 205 ----VILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp ----SEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred ----chhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 88999999999 45542 245666666555544447884 8889999999998765
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=4.6e-18 Score=174.18 Aligned_cols=154 Identities=17% Similarity=0.233 Sum_probs=125.5
Q ss_pred CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359 676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT 755 (979)
Q Consensus 676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 755 (979)
+.++++++.++ .+|..+. ++++.|++++|++++..+..+..+++|+.|++++|++++..|..+.+++.|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 45566666655 4555432 467777777777776666678888888899999888887778777776665
Q ss_pred ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359 756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES 835 (979)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 835 (979)
+.|+|++|++++..+..|..+++|+.|+|++|++++..|..
T Consensus 83 ---------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 123 (220)
T 2v9t_B 83 ---------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123 (220)
T ss_dssp ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ---------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence 78899999998655566788999999999999999888999
Q ss_pred CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359 836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK 879 (979)
Q Consensus 836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 879 (979)
|..+++|+.|||++|++++..|..+..+++|++|++++|++.+.
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 99999999999999999988888899999999999999999864
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1e-17 Score=172.96 Aligned_cols=155 Identities=21% Similarity=0.268 Sum_probs=126.1
Q ss_pred CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359 676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT 755 (979)
Q Consensus 676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 755 (979)
+.++.+++.+. .+|..+ .++|+.|++++|++++..|..+..+++|+.|++++|++.+..+..+..++.|
T Consensus 22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------- 90 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------- 90 (229)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc-------
Confidence 45666666554 566543 2677777777787777777778888888888888888864444555555554
Q ss_pred ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359 756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES 835 (979)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 835 (979)
+.|||++|++++..+..+..+++|+.|+|++|+++ .+|..
T Consensus 91 ---------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 130 (229)
T 3e6j_A 91 ---------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG 130 (229)
T ss_dssp ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT
T ss_pred ---------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc
Confidence 78999999999777777899999999999999999 88999
Q ss_pred CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359 836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 881 (979)
+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+
T Consensus 131 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9999999999999999998777889999999999999999998765
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=171.55 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=100.8
Q ss_pred CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359 676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT 755 (979)
Q Consensus 676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 755 (979)
++|++++|++++..|...+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+..++.|
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------- 107 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------- 107 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC-------
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC-------
Confidence 3444444444433332222245555555556666655555667778888888888888877666666666555
Q ss_pred ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359 756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES 835 (979)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 835 (979)
+.|+|++|++++..|..+..+++|+.|+|++|++++..|..
T Consensus 108 ---------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 108 ---------------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp ---------------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred ---------------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 78889999998888899999999999999999999888999
Q ss_pred CCccCCCCEEECcCCcccccCC
Q 042359 836 IGVMRSLESIDFSANQLSGEIP 857 (979)
Q Consensus 836 ~~~l~~L~~LdLs~N~l~~~ip 857 (979)
|..+++|+.|+|++|.+++..+
T Consensus 149 ~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTCTTCCEEECCSCCEECSGG
T ss_pred hcCCCCCCEEEecCcCCcCCCc
Confidence 9999999999999999987654
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=3.1e-18 Score=183.71 Aligned_cols=189 Identities=19% Similarity=0.276 Sum_probs=111.5
Q ss_pred ccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccC
Q 042359 603 LNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGE 682 (979)
Q Consensus 603 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 682 (979)
+..+.+..+.+.+..+ ...+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +.++++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 3334445554443322 3345667777777776663 33 35666666677776666665333 66666666666666
Q ss_pred CcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccC
Q 042359 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYL 762 (979)
Q Consensus 683 N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 762 (979)
|++++ +| .+..+++|+.|++++|++++. ..+..++.
T Consensus 100 n~l~~-~~--------------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~--------------- 135 (291)
T 1h6t_A 100 NKVKD-LS--------------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ--------------- 135 (291)
T ss_dssp SCCCC-GG--------------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTT---------------
T ss_pred CcCCC-Ch--------------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCC---------------
Confidence 66552 22 244455555555555555431 12222222
Q ss_pred CCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCC
Q 042359 763 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSL 842 (979)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L 842 (979)
|+.|++++|++++. ..++.+++|+.|++++|++++..| +..+++|
T Consensus 136 -------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L 180 (291)
T 1h6t_A 136 -------------------------------LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180 (291)
T ss_dssp -------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred -------------------------------CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCcc
Confidence 35666666666643 456667777777777777775444 6777777
Q ss_pred CEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359 843 ESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG 878 (979)
Q Consensus 843 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 878 (979)
+.|+|++|++++ +|. +..+++|+.|++++|+++.
T Consensus 181 ~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence 777777777774 343 6777777777777777765
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.2e-18 Score=201.31 Aligned_cols=191 Identities=26% Similarity=0.384 Sum_probs=119.4
Q ss_pred CCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccE
Q 042359 574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVW 653 (979)
Q Consensus 574 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 653 (979)
.+..+.+..+.+.+..+. ..++.|+.|++++|.+.. +| .+..+++|+.|+|++|++++..| +..+++|+.
T Consensus 22 ~l~~l~l~~~~i~~~~~~------~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ------NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHTTCSCTTSEECH------HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHhccCCCcccccch------hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 344455555555543331 235677777777777763 33 46677777777777777775433 667777777
Q ss_pred EEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCc
Q 042359 654 LHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNN 733 (979)
Q Consensus 654 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 733 (979)
|+|++|.+++ + ..+..+++|+.|+|++|.+.+ +| .+. .+++|+.|+|++|++++. ..+..+++|+.|+|++|+
T Consensus 92 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 92 LFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp EECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC
T ss_pred EECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc
Confidence 7777777764 2 256777777777777777763 33 233 566777777777776654 456666777777777776
Q ss_pred cccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccccccccccc
Q 042359 734 LSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT 813 (979)
Q Consensus 734 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~ 813 (979)
+.+..| +..++.| +.|+|++|++++. | .+.
T Consensus 165 l~~~~~--l~~l~~L----------------------------------------------~~L~Ls~N~i~~l-~-~l~ 194 (605)
T 1m9s_A 165 ISDIVP--LAGLTKL----------------------------------------------QNLYLSKNHISDL-R-ALA 194 (605)
T ss_dssp CCCCGG--GTTCTTC----------------------------------------------CEEECCSSCCCBC-G-GGT
T ss_pred CCCchh--hccCCCC----------------------------------------------CEEECcCCCCCCC-h-HHc
Confidence 665444 4443333 6667777766643 3 466
Q ss_pred CCCCCCEEeCCCCcceec
Q 042359 814 NLKALQSLNFSYNSFTGR 831 (979)
Q Consensus 814 ~l~~L~~L~Ls~N~l~~~ 831 (979)
.+++|+.|+|++|.+++.
T Consensus 195 ~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCTTCSEEECCSEEEECC
T ss_pred cCCCCCEEEccCCcCcCC
Confidence 666777777777766643
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=3.2e-20 Score=217.03 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=110.1
Q ss_pred ccccccccccCCCCCCEEe-ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccC
Q 042359 661 LSGNILVSLKNCTALESLD-VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP 739 (979)
Q Consensus 661 l~~~~p~~l~~l~~L~~L~-L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 739 (979)
..+..|..+.++++|+.|+ ++.|. +..|+.+.+.+|.+++..+ ..|+.|++++|++++ +|
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~------------~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp 457 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAY------------LDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LC 457 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHH------------HHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CC
T ss_pred cccCCHHHHHHHHhcccCcchhhcc------------cchhhhhhhhcccccccCc------cCceEEEecCCCCCC-Cc
Confidence 3445555566666666665 44432 2234444555555553221 247888888888875 56
Q ss_pred cchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCC
Q 042359 740 NCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQ 819 (979)
Q Consensus 740 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 819 (979)
. +++++.| +.|+|++|+|+ .+|..++++++|+
T Consensus 458 ~-~~~l~~L----------------------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 458 H-LEQLLLV----------------------------------------------THLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp C-GGGGTTC----------------------------------------------CEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred C-ccccccC----------------------------------------------cEeecCccccc-ccchhhhcCCCCC
Confidence 5 6665555 78888888888 7888888888888
Q ss_pred EEeCCCCcceeccCCCCCccCCCCEEECcCCcccccC-CCCCCCCCCCCEEEccCCcccccCCCC
Q 042359 820 SLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEI-PESMSSLTFLNHLNLSNNNLTGKIPSS 883 (979)
Q Consensus 820 ~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~~ 883 (979)
.|+|++|+|++ +| .++.+++|+.|||++|+|++.+ |..++.+++|+.|+|++|++++.+|..
T Consensus 490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 88888888885 67 7888888888888888888776 888888888888888888888876643
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=8.7e-17 Score=165.86 Aligned_cols=164 Identities=24% Similarity=0.313 Sum_probs=108.3
Q ss_pred CCCCCCCCCccccceeccCCCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCCCccc
Q 042359 63 ASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPR 142 (979)
Q Consensus 63 ~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~ 142 (979)
..|..+...|.|.+|.|+.. -.+.+|..+. ++|++|+|++|.++++ .|.
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~----------------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~ 58 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK----------------------------RHASVPAGIP--TNAQILYLHDNQITKL-EPG 58 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS----------------------------CCSSCCSCCC--TTCSEEECCSSCCCCC-CTT
T ss_pred hccCCCCCEEeCCEeEccCC----------------------------CcCccCCCCC--CCCCEEEcCCCccCcc-CHH
Confidence 34545778899999999631 1223444333 7888888888888876 577
Q ss_pred cccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCC
Q 042359 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKL 222 (979)
Q Consensus 143 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l 222 (979)
.|..+++|++|+|++|++....+..|..+++|++|+|++|++..++
T Consensus 59 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~---------------------------------- 104 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP---------------------------------- 104 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------------------
T ss_pred HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC----------------------------------
Confidence 7888888888888888887655556677777777777766554333
Q ss_pred CCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhcc
Q 042359 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYR 302 (979)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 302 (979)
+..+..+++|++|++++|.++. +|..+..+++|++|++++|++++..+..+..
T Consensus 105 -----------------~~~~~~l~~L~~L~Ls~N~l~~----------lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 105 -----------------SAVFDRLVHLKELFMCCNKLTE----------LPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp -----------------TTTTTTCTTCCEEECCSSCCCS----------CCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred -----------------hhHhCcchhhCeEeccCCcccc----------cCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 3344455556666666666542 4555566666666666666666555555666
Q ss_pred CCCCCEEeccCCcCcc
Q 042359 303 FIHLEYLSLSNNSLQG 318 (979)
Q Consensus 303 l~~L~~L~L~~n~l~~ 318 (979)
+++|++|++++|.+..
T Consensus 158 l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTCCEEECTTSCBCT
T ss_pred CCCCCEEEeeCCCccC
Confidence 6666666666666653
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.7e-20 Score=217.61 Aligned_cols=202 Identities=20% Similarity=0.199 Sum_probs=153.6
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCc-------------ccccCCcccCCCCCccEEE-cCCccccccc
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNK-------------FTGNLPYSMGSLTSLVWLH-LGENRLSGNI 665 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~ 665 (979)
++.|+.|+|++|++. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 456666666666665 556666666666666665554 4556677778888888888 6666543
Q ss_pred cccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhc
Q 042359 666 LVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745 (979)
Q Consensus 666 p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 745 (979)
.|+.+.+++|.+.. +| ...|+.|++++|.+++ +|. ++.+++|+.|++++|+++ .+|..++++
T Consensus 424 --------~L~~l~l~~n~i~~-l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 --------DLRSKFLLENSVLK-ME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHHH-HH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------hhhhhhhhcccccc-cC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 34455666666652 22 2358888888888886 565 888999999999999998 788888777
Q ss_pred ccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCC
Q 042359 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY 825 (979)
Q Consensus 746 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 825 (979)
++| +.|+|++|++++ +| .++++++|+.|+|++
T Consensus 486 ~~L----------------------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 486 RCL----------------------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TTC----------------------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CCC----------------------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 766 789999999996 77 899999999999999
Q ss_pred Ccceecc-CCCCCccCCCCEEECcCCcccccCCCC---CCCCCCCCEEEc
Q 042359 826 NSFTGRI-PESIGVMRSLESIDFSANQLSGEIPES---MSSLTFLNHLNL 871 (979)
Q Consensus 826 N~l~~~i-p~~~~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L~~L~l 871 (979)
|+|++.+ |..++.+++|+.|+|++|++++.+|.. +..+++|+.||+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999877 999999999999999999999776533 233788998875
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.3e-17 Score=174.82 Aligned_cols=172 Identities=26% Similarity=0.323 Sum_probs=123.8
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCC
Q 042359 119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSF 198 (979)
Q Consensus 119 l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~ 198 (979)
+.++++|++|++++|.+... + .++.+++|++|++++|++++..+ +.++++|++|++++|.+..++. +..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS---LKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG---GTTCTT
T ss_pred hhhcCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh---hccCCC
Confidence 45688899999999988863 4 37888999999999999886544 8888999999999988776543 677777
Q ss_pred CCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC
Q 042359 199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN 278 (979)
Q Consensus 199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~ 278 (979)
|++|++++|.+.+. ..+..+++|++|++++|+++++ ..+..+++|++|++++|.++. ++. +..
T Consensus 114 L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~----------~~~-l~~ 176 (291)
T 1h6t_A 114 LKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD----------IVP-LAG 176 (291)
T ss_dssp CCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC----------CGG-GTT
T ss_pred CCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc----------chh-hcC
Confidence 88888877777764 2355667777777777777665 456667777777777777653 222 666
Q ss_pred CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCc
Q 042359 279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQ 317 (979)
Q Consensus 279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 317 (979)
+++|++|++++|.+++. + .+..+++|++|++++|.+.
T Consensus 177 l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 67777777777776643 3 3666677777777776665
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=4.6e-17 Score=191.39 Aligned_cols=148 Identities=28% Similarity=0.325 Sum_probs=79.3
Q ss_pred CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL 651 (979)
Q Consensus 572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 651 (979)
+.+|+.|++++|.+... + .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++.+ +| .+..+++|
T Consensus 42 L~~L~~L~l~~n~i~~l-~-----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-----GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-----TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred CCCCCEEECcCCCCCCC-h-----HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 44555566665555432 1 12335556666666665554333 5555566666666665553 22 45555566
Q ss_pred cEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccC
Q 042359 652 VWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIAD 731 (979)
Q Consensus 652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 731 (979)
+.|+|++|++++. ..+..+++|+.|+|++|.+++. ..+. .+++|+.|+|++|++.+..| +..+++|+.|+|++
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence 6666666665542 2355556666666666655532 2232 45556666666666554444 55556666666666
Q ss_pred Ccccc
Q 042359 732 NNLSG 736 (979)
Q Consensus 732 n~l~~ 736 (979)
|++++
T Consensus 185 N~i~~ 189 (605)
T 1m9s_A 185 NHISD 189 (605)
T ss_dssp SCCCB
T ss_pred CCCCC
Confidence 65553
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=1e-17 Score=186.08 Aligned_cols=111 Identities=23% Similarity=0.164 Sum_probs=67.0
Q ss_pred CEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccccc-CCCCCCEEeccCCcccccCChhHHHhhhccceeecc
Q 042359 628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLK-NCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR 706 (979)
Q Consensus 628 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~ 706 (979)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..+. ++++|++|+|++|++++..|..+. .+++|+.|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence 57888888887 5776554 4578888888888876666666 777777777777777643333333 45555555555
Q ss_pred CCcccCCCCccccCCCCccEEEccCCccccccCcch
Q 042359 707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI 742 (979)
Q Consensus 707 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 742 (979)
+|++++..+..|..+++|+.|+|++|++++..|..+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 132 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence 555554444444444444444444444443333333
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=3.2e-17 Score=164.03 Aligned_cols=132 Identities=19% Similarity=0.263 Sum_probs=104.8
Q ss_pred ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCc-chhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPN-CINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV 779 (979)
Q Consensus 701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (979)
+.+++++|.++ .+|..+.. +++.|++++|++++..|. .+.+++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L------------------------------- 56 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL------------------------------- 56 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence 45666666664 45554433 778888888888755543 25555444
Q ss_pred ecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC
Q 042359 780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES 859 (979)
Q Consensus 780 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~ 859 (979)
+.|+|++|++++.+|..|+++++|+.|+|++|++++..|..|+.+++|++|||++|++++.+|..
T Consensus 57 ---------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 57 ---------------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp ---------------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred ---------------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence 78888888888888888889999999999999999888888888999999999999999888999
Q ss_pred CCCCCCCCEEEccCCcccccCC
Q 042359 860 MSSLTFLNHLNLSNNNLTGKIP 881 (979)
Q Consensus 860 l~~l~~L~~L~ls~N~l~g~ip 881 (979)
+..+++|++|++++|+++|..|
T Consensus 122 ~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 122 FEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp STTCTTCCEEECTTCCBCCSGG
T ss_pred hhcCCCCCEEEeCCCCccCcCc
Confidence 9999999999999999988765
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=8.4e-17 Score=164.76 Aligned_cols=154 Identities=13% Similarity=0.210 Sum_probs=108.4
Q ss_pred CEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccC
Q 042359 628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRS 707 (979)
Q Consensus 628 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~ 707 (979)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|+|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--------------------- 69 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--------------------- 69 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------------
Confidence 46777777776 5565443 56677777777766555555666666666666655554
Q ss_pred CcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchh
Q 042359 708 NKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY 787 (979)
Q Consensus 708 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (979)
+..|..|..+++|+.|++++|++++..+..+..+++|
T Consensus 70 ----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L--------------------------------------- 106 (220)
T 2v9t_B 70 ----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL--------------------------------------- 106 (220)
T ss_dssp ----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------------
T ss_pred ----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC---------------------------------------
Confidence 3445556666777777777777764333334444444
Q ss_pred hhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc
Q 042359 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE 855 (979)
Q Consensus 788 ~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 855 (979)
+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 107 -------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 107 -------QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred -------CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 7788888888877788888889999999999999987777888899999999999988753
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=6.7e-17 Score=162.66 Aligned_cols=154 Identities=17% Similarity=0.316 Sum_probs=93.9
Q ss_pred CCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccE
Q 042359 647 SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQI 726 (979)
Q Consensus 647 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 726 (979)
.+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|+.
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~---------------------------~~~~l~~l~~L~~ 92 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT---------------------------NYNPISGLSNLER 92 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS---------------------------CCGGGTTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC---------------------------cchhhhcCCCCCE
Confidence 3455556666655555 333 3445555555555555332 1224555666666
Q ss_pred EEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccc
Q 042359 727 LDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 806 (979)
Q Consensus 727 L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~ 806 (979)
|++++|++++..|..++.++.| +.|++++|++++
T Consensus 93 L~l~~n~l~~~~~~~l~~l~~L----------------------------------------------~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 93 LRIMGKDVTSDKIPNLSGLTSL----------------------------------------------TLLDISHSAHDD 126 (197)
T ss_dssp EEEECTTCBGGGSCCCTTCTTC----------------------------------------------CEEECCSSBCBG
T ss_pred EEeECCccCcccChhhcCCCCC----------------------------------------------CEEEecCCccCc
Confidence 6666666666555555554444 667777777776
Q ss_pred cccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359 807 KIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG 878 (979)
Q Consensus 807 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 878 (979)
..|..++.+++|+.|++++|++.+.+| .++.+++|+.|++++|++++ +| .+..+++|++|++++|++.+
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 667777777777777777777333555 57777777777777777775 33 56777777788887777653
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.1e-17 Score=202.16 Aligned_cols=191 Identities=19% Similarity=0.189 Sum_probs=120.0
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCccc
Q 042359 607 QLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV 686 (979)
Q Consensus 607 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 686 (979)
+++.|.+. ..|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|.++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 33444444 45677888889999999999988 77877778899999999999998 78888899999999999999998
Q ss_pred ccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCc
Q 042359 687 GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPI 766 (979)
Q Consensus 687 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 766 (979)
.+|..+. .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+...
T Consensus 284 -~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~------------------ 342 (727)
T 4b8c_D 284 -SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT------------------ 342 (727)
T ss_dssp -SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH------------------
T ss_pred -ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh------------------
Confidence 7888887 7899999999999887 778889999999999999999998888877654322
Q ss_pred ccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCC--------cceeccCCCCCc
Q 042359 767 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYN--------SFTGRIPESIGV 838 (979)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~~~~ 838 (979)
...++|++|.++|.+|.. |+.|++++| .+.+.++..+..
T Consensus 343 ---------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~ 389 (727)
T 4b8c_D 343 ---------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD 389 (727)
T ss_dssp ---------------------------HHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred ---------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence 023678888888888865 445666666 444455555566
Q ss_pred cCCCCEEECcCCcccc
Q 042359 839 MRSLESIDFSANQLSG 854 (979)
Q Consensus 839 l~~L~~LdLs~N~l~~ 854 (979)
+..++...+++|-+.+
T Consensus 390 l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 390 LAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ------------CCCG
T ss_pred ccccceeeeecccccc
Confidence 6666677777777654
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=7.6e-18 Score=203.42 Aligned_cols=193 Identities=19% Similarity=0.164 Sum_probs=124.2
Q ss_pred EEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCc
Q 042359 630 LKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 709 (979)
Q Consensus 630 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~ 709 (979)
++++.|.+. ..|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+. .+++|++|+|++|.
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCc
Confidence 345556665 56778889999999999999998 67777779999999999999998 8998887 79999999999999
Q ss_pred ccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhh
Q 042359 710 FHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYED 789 (979)
Q Consensus 710 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (979)
|+ .+|..++.+++|+.|+|++|.++ .+|..|++++.|
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L----------------------------------------- 318 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL----------------------------------------- 318 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC-----------------------------------------
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc-----------------------------------------
Confidence 99 78999999999999999999996 788888777766
Q ss_pred hccceeEEecccCcccccccccccCCCC-CCEEeCCCCcceeccCCCCCccCCCCEEECcCC--------cccccCCCCC
Q 042359 790 ILNLVRMIDISRNNFSGKIPLEVTNLKA-LQSLNFSYNSFTGRIPESIGVMRSLESIDFSAN--------QLSGEIPESM 860 (979)
Q Consensus 790 ~~~~L~~LdLs~N~l~~~ip~~l~~l~~-L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N--------~l~~~ip~~l 860 (979)
+.|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|.. |+.|++++| .+.+.++..+
T Consensus 319 -----~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~ 387 (727)
T 4b8c_D 319 -----QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLA 387 (727)
T ss_dssp -----CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------
T ss_pred -----cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchh
Confidence 78999999999999988865432 234789999999998864 556677777 4555555566
Q ss_pred CCCCCCCEEEccCCcccccC
Q 042359 861 SSLTFLNHLNLSNNNLTGKI 880 (979)
Q Consensus 861 ~~l~~L~~L~ls~N~l~g~i 880 (979)
.++..+....+++|-+.+..
T Consensus 388 ~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 388 TDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp --------------CCCGGG
T ss_pred hcccccceeeeecccccccc
Confidence 67777888889999887543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.8e-17 Score=172.29 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=62.5
Q ss_pred eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873 (979)
Q Consensus 794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 873 (979)
|+.|+|++|++++ +| .++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++. ..+..+++|++|++++
T Consensus 108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 3677888887775 33 47788888888888888885 34 578888888888888888866 6678888888888888
Q ss_pred Cccccc
Q 042359 874 NNLTGK 879 (979)
Q Consensus 874 N~l~g~ 879 (979)
|++++.
T Consensus 182 N~~~~~ 187 (263)
T 1xeu_A 182 QKCVNE 187 (263)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 888765
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.4e-16 Score=160.39 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=110.0
Q ss_pred ccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhcc
Q 042359 621 WMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRM 700 (979)
Q Consensus 621 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L 700 (979)
...+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~---------- 105 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKI---------- 105 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGS----------
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccC----------
Confidence 356789999999999998 677 68999999999999997753 3467777888888877777765434
Q ss_pred ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS 780 (979)
Q Consensus 701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (979)
..++.+++|+.|++++|++++..|..+..++.|
T Consensus 106 ---------------~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L-------------------------------- 138 (197)
T 4ezg_A 106 ---------------PNLSGLTSLTLLDISHSAHDDSILTKINTLPKV-------------------------------- 138 (197)
T ss_dssp ---------------CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC--------------------------------
T ss_pred ---------------hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC--------------------------------
Confidence 344555666666666666665555555544444
Q ss_pred cCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc
Q 042359 781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG 854 (979)
Q Consensus 781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~ 854 (979)
+.|+|++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 139 --------------~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 --------------NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --------------CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred --------------CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 566666666333555 57778888888888888884 44 67888888888888888764
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=1.5e-16 Score=176.48 Aligned_cols=177 Identities=24% Similarity=0.250 Sum_probs=140.7
Q ss_pred EEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCC
Q 042359 556 ILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNN 635 (979)
Q Consensus 556 ~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 635 (979)
.++++++.++......+..++.|++++|.+++..+..+. ..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 445555555443334456788888888888876554332 15789999999999999887888999999999999999
Q ss_pred cccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHH---HhhhccceeeccCCcccC
Q 042359 636 KFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG---ERFSRMVVLILRSNKFHG 712 (979)
Q Consensus 636 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~~L~L~~n~l~~ 712 (979)
++++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+++ .+|..++ ..+++|+.|+|++|++++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 998777778899999999999999999888889999999999999999998 5776654 358899999999999986
Q ss_pred CCCccccCCCC--ccEEEccCCcccc
Q 042359 713 PLPTGLCDLAF--LQILDIADNNLSG 736 (979)
Q Consensus 713 ~~p~~l~~l~~--L~~L~Ls~n~l~~ 736 (979)
..+..+..++. ++.|++++|++..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 66667777776 4889999998863
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.5e-16 Score=159.05 Aligned_cols=132 Identities=20% Similarity=0.292 Sum_probs=105.5
Q ss_pred CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCc-cccCCCCccEEEccCCccccccCcchhhcccCcccccc
Q 042359 676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT-GLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSF 754 (979)
Q Consensus 676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~ 754 (979)
+++++++|.++ .+|..+. .+++.|++++|++++..+. .+..+++|+.|++++|++++..|..+.+++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 45666666664 5665443 3677777777777655554 37788888888888888888778777766665
Q ss_pred cccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCC
Q 042359 755 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPE 834 (979)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 834 (979)
+.|+|++|++++..|..|+.+++|+.|+|++|++++.+|.
T Consensus 81 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 81 ----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp ----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred ----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 7889999999988888899999999999999999999999
Q ss_pred CCCccCCCCEEECcCCcccccCC
Q 042359 835 SIGVMRSLESIDFSANQLSGEIP 857 (979)
Q Consensus 835 ~~~~l~~L~~LdLs~N~l~~~ip 857 (979)
.++.+++|++|+|++|++++..+
T Consensus 121 ~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 121 SFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SSTTCTTCCEEECTTCCBCCSGG
T ss_pred HhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999999998765
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=5.3e-16 Score=163.50 Aligned_cols=128 Identities=25% Similarity=0.291 Sum_probs=70.6
Q ss_pred cccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCC
Q 042359 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS 197 (979)
Q Consensus 118 ~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~ 197 (979)
.+.++++|++|++++|.++. +| .++.+++|++|+|++|++++..| ++++++|++|++++|++..++... . +
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~---~-~ 106 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---S-A 106 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC---C-S
T ss_pred chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc---c-C
Confidence 45666677777777776664 33 46666777777777777664433 666677777777776666554422 1 5
Q ss_pred CCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCC
Q 042359 198 FLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFD 260 (979)
Q Consensus 198 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (979)
+|++|++++|.+++.. .+..+++|++|++++|+++++. .+..+++|++|++++|.++
T Consensus 107 ~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCC
T ss_pred cccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCc
Confidence 5555555555554431 2344444444444444444432 3444444444444444443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=5.9e-15 Score=147.37 Aligned_cols=130 Identities=23% Similarity=0.344 Sum_probs=109.3
Q ss_pred ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS 780 (979)
Q Consensus 701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (979)
+.+++++|.++ .+|..+. ++|+.|++++|+++ .+|..+.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------------------- 56 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL-------------------------------- 56 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence 45666677666 4555443 57888999999887 677766666555
Q ss_pred cCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCC
Q 042359 781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM 860 (979)
Q Consensus 781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l 860 (979)
+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+
T Consensus 57 --------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 122 (193)
T 2wfh_A 57 --------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122 (193)
T ss_dssp --------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred --------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence 789999999998888889999999999999999998888899999999999999999997777789
Q ss_pred CCCCCCCEEEccCCcccccC
Q 042359 861 SSLTFLNHLNLSNNNLTGKI 880 (979)
Q Consensus 861 ~~l~~L~~L~ls~N~l~g~i 880 (979)
..+++|++|++++|++.+..
T Consensus 123 ~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 123 NDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp TTCTTCCEEECCSSCEECSG
T ss_pred hcCccccEEEeCCCCeecCC
Confidence 99999999999999998753
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=8.6e-15 Score=144.40 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=104.9
Q ss_pred cceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359 700 MVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV 779 (979)
Q Consensus 700 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (979)
.+.+++++|+++ .+|..+ .++|+.|++++|++++..+..+..++.|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L------------------------------- 54 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL------------------------------- 54 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------------------
Confidence 345666666665 344333 2577888888888875555555555544
Q ss_pred ecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC
Q 042359 780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES 859 (979)
Q Consensus 780 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~ 859 (979)
+.|++++|++++..+..++.+++|+.|+|++|++++..+..++.+++|++|+|++|++++..+..
T Consensus 55 ---------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 55 ---------------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119 (177)
T ss_dssp ---------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ---------------cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHH
Confidence 78888888888666677889999999999999999877777899999999999999999766667
Q ss_pred CCCCCCCCEEEccCCcccccCCC
Q 042359 860 MSSLTFLNHLNLSNNNLTGKIPS 882 (979)
Q Consensus 860 l~~l~~L~~L~ls~N~l~g~ip~ 882 (979)
+..+++|++|++++|+++|.+|.
T Consensus 120 ~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 120 FDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp TTTCTTCCEEECCSSCBCCCHHH
T ss_pred hcCCcccCEEEecCCCeeccCcc
Confidence 78899999999999999988763
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=1.9e-15 Score=147.69 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=41.1
Q ss_pred eEEecccCcccccccccccCCCCCCEEeCCCCcceec-cCCCCCccCCCCEEECcCCcccccCC---CCCCCCCCCCEEE
Q 042359 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR-IPESIGVMRSLESIDFSANQLSGEIP---ESMSSLTFLNHLN 870 (979)
Q Consensus 795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~~L~ 870 (979)
+.|+|++|++++.+|..++.+++|+.|+|++|++++. .+..++.+++|+.|++++|++++..+ ..+..+++|++||
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 3444444444444444444455555555555555532 11445555555555555555554333 2455555555555
Q ss_pred ccCCccc
Q 042359 871 LSNNNLT 877 (979)
Q Consensus 871 ls~N~l~ 877 (979)
+++|.+.
T Consensus 154 l~~n~~~ 160 (168)
T 2ell_A 154 GYDREDQ 160 (168)
T ss_dssp TEETTSC
T ss_pred CCCCChh
Confidence 5555544
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=5.4e-15 Score=144.52 Aligned_cols=138 Identities=19% Similarity=0.231 Sum_probs=107.4
Q ss_pred CCCCCEEeccCCccc-ccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcc
Q 042359 672 CTALESLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVT 750 (979)
Q Consensus 672 l~~L~~L~L~~N~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~ 750 (979)
.++|+.|++++|.++ +.+|..+. .+++|+.|++++|.+++. ..+..+++|+.|++++|++++.+|..+.+++.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-- 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL-- 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC--
T ss_pred cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC--
Confidence 356666677776665 56666554 577777777777777755 678888999999999999987777777666655
Q ss_pred cccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccc-cccccCCCCCCEEeCCCCcce
Q 042359 751 ACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI-PLEVTNLKALQSLNFSYNSFT 829 (979)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~ 829 (979)
+.|+|++|++++.. +..++.+++|+.|++++|.++
T Consensus 98 --------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 98 --------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp --------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred --------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 78999999998642 378899999999999999999
Q ss_pred eccC---CCCCccCCCCEEECcCCcccccCCCC
Q 042359 830 GRIP---ESIGVMRSLESIDFSANQLSGEIPES 859 (979)
Q Consensus 830 ~~ip---~~~~~l~~L~~LdLs~N~l~~~ip~~ 859 (979)
+..+ ..+..+++|+.||+++|.+. .+|+.
T Consensus 134 ~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 134 NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp TSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred chHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 5444 37889999999999999987 45554
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=1.8e-15 Score=144.58 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=96.7
Q ss_pred hhccceeeccCCccc-CCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeee
Q 042359 697 FSRMVVLILRSNKFH-GPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEK 775 (979)
Q Consensus 697 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (979)
.++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+++++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~---------------------------- 65 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK---------------------------- 65 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence 456777777777777 67777777788888888888877644 33333333
Q ss_pred eEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceec-cCCCCCccCCCCEEECcCCcccc
Q 042359 776 ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR-IPESIGVMRSLESIDFSANQLSG 854 (979)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~LdLs~N~l~~ 854 (979)
|+.|+|++|++++.+|..++.+++|+.|++++|++++. .|..++.+++|++|++++|++++
T Consensus 66 ------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 66 ------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 37788888888877888777788888888888888863 44778888888888888888886
Q ss_pred cCC---CCCCCCCCCCEEEccC
Q 042359 855 EIP---ESMSSLTFLNHLNLSN 873 (979)
Q Consensus 855 ~ip---~~l~~l~~L~~L~ls~ 873 (979)
..+ ..+..+++|++||+++
T Consensus 128 ~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 128 LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp STTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHHHHHHHCCCcccccCCC
Confidence 655 4678888888888763
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.3e-15 Score=164.76 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=43.1
Q ss_pred CcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCC-EEEcCCCcCccccChhhhcCCCCCcEEEc
Q 042359 385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLR-VLRINDNKLNGTLSAIHFANLTKLSWFRV 463 (979)
Q Consensus 385 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 463 (979)
|+.+++++|+++...+..|.++++|+++++.+| ++.+.+.+|.++++|+ .+++.+ .++ .++...|.++++|+.+++
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEE
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEe
Confidence 555555555554444444555555555555554 4444444455555555 555544 333 444444555555555555
Q ss_pred cCCcccccccCCC
Q 042359 464 DGNKLTLGVKHDW 476 (979)
Q Consensus 464 ~~n~l~~~~~~~~ 476 (979)
+.|.++.+....|
T Consensus 305 ~~n~i~~I~~~aF 317 (329)
T 3sb4_A 305 TGDKITTLGDELF 317 (329)
T ss_dssp CSSCCCEECTTTT
T ss_pred CCCccCccchhhh
Confidence 4444444433333
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=5.8e-15 Score=161.62 Aligned_cols=219 Identities=14% Similarity=0.101 Sum_probs=123.0
Q ss_pred CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccc----cccccccccCCCCC
Q 042359 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL----SGNILVSLKNCTAL 675 (979)
Q Consensus 600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L 675 (979)
+++|+.+++.+ .+...-+.+|.+|++|+.+++++|.+....+..|..+.++..+....+.. .......|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777777 66655556677777777777777777655566676666666666555321 11223345556666
Q ss_pred C-EEeccCCcccccCChhHHHh---hhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccc
Q 042359 676 E-SLDVGENEFVGNIPTWIGER---FSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTA 751 (979)
Q Consensus 676 ~-~L~L~~N~l~~~ip~~~~~~---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~ 751 (979)
+ .+++... +.++..++.. ..++..+.+.++-.......-...+++|+.+++++|+++..-+..|.++++|
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L--- 252 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL--- 252 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence 5 4444332 1233333211 2334444444331110000001125667777777666664333445555544
Q ss_pred ccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCC-EEeCCCCccee
Q 042359 752 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQ-SLNFSYNSFTG 830 (979)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~ 830 (979)
+.|+|++| ++..-+..|.++++|+ .+++++ +++.
T Consensus 253 -------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 253 -------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp -------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred -------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence 56666666 5544455667777777 777766 5664
Q ss_pred ccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEE
Q 042359 831 RIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLN 870 (979)
Q Consensus 831 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 870 (979)
.-+.+|.++++|+.|++++|+++..-+..|.++++|+.++
T Consensus 288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5556677777777777777777766666677777776664
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=4.4e-14 Score=140.99 Aligned_cols=129 Identities=20% Similarity=0.296 Sum_probs=97.3
Q ss_pred CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359 676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT 755 (979)
Q Consensus 676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 755 (979)
+++++++|.++ .+|..+. ++++.|++++|+++ .+|..+..+++|+.|++++|++++..|..|.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 34555555554 4554332 45666666666666 566677777888888888888876666666666555
Q ss_pred ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359 756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES 835 (979)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 835 (979)
+.|||++|++++..|..|..+++|+.|+|++|++++..+..
T Consensus 81 ---------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 121 (193)
T 2wfh_A 81 ---------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121 (193)
T ss_dssp ---------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred ---------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence 78888888888877888999999999999999999766667
Q ss_pred CCccCCCCEEECcCCccccc
Q 042359 836 IGVMRSLESIDFSANQLSGE 855 (979)
Q Consensus 836 ~~~l~~L~~LdLs~N~l~~~ 855 (979)
|..+++|+.|+|++|.+.+.
T Consensus 122 ~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 122 FNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTTCTTCCEEECCSSCEECS
T ss_pred hhcCccccEEEeCCCCeecC
Confidence 99999999999999999764
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=6.2e-14 Score=138.23 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=101.9
Q ss_pred CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359 676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT 755 (979)
Q Consensus 676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 755 (979)
+.+++++|.++ .+|..+ .++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..++.|
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------- 78 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------- 78 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc-------
Confidence 45666666655 455433 3567777777777776666667788888888888888875555555555554
Q ss_pred ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359 756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES 835 (979)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 835 (979)
+.|+|++|++++..+..++.+++|+.|+|++|++++..+..
T Consensus 79 ---------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 79 ---------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119 (177)
T ss_dssp ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ---------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHH
Confidence 78999999999777777899999999999999999766666
Q ss_pred CCccCCCCEEECcCCcccccCC
Q 042359 836 IGVMRSLESIDFSANQLSGEIP 857 (979)
Q Consensus 836 ~~~l~~L~~LdLs~N~l~~~ip 857 (979)
+..+++|+.|+|++|++++..|
T Consensus 120 ~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 120 FDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCcccCEEEecCCCeeccCc
Confidence 7889999999999999997665
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=2.2e-14 Score=136.92 Aligned_cols=127 Identities=22% Similarity=0.230 Sum_probs=65.3
Q ss_pred CcccEEeccCcccc-ccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359 601 KSLNALQLNDNYLN-GELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679 (979)
Q Consensus 601 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 679 (979)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 45555555555555555555555533 4455555555555555555554555554555555555
Q ss_pred ccCCccccc-CChhHHHhhhccceeeccCCcccCCCC---ccccCCCCccEEEcc
Q 042359 680 VGENEFVGN-IPTWIGERFSRMVVLILRSNKFHGPLP---TGLCDLAFLQILDIA 730 (979)
Q Consensus 680 L~~N~l~~~-ip~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls 730 (979)
+++|++++. .|..+. .+++|+.|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555431 123333 44555555555555554333 244455555555544
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=5.5e-16 Score=156.07 Aligned_cols=132 Identities=20% Similarity=0.275 Sum_probs=78.0
Q ss_pred hHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCccccee
Q 042359 692 WIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVI 771 (979)
Q Consensus 692 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 771 (979)
.+. .+++|+.|++++|++++ +| .+..+++|+.|++++|+++ .+|..+..++.|
T Consensus 43 ~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L----------------------- 95 (198)
T 1ds9_A 43 TLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL----------------------- 95 (198)
T ss_dssp HHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC-----------------------
T ss_pred HHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC-----------------------
Confidence 443 45566666666666554 44 5555666666666666665 445444433333
Q ss_pred eeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccC-CCCCccCCCCEEECcCC
Q 042359 772 LVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIP-ESIGVMRSLESIDFSAN 850 (979)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~LdLs~N 850 (979)
+.|+|++|++++ +| .++.+++|+.|++++|++++..+ ..+..+++|++|++++|
T Consensus 96 -----------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 96 -----------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp -----------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred -----------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 566666666664 44 46666667777777776663222 35566667777777777
Q ss_pred cccccCCCC----------CCCCCCCCEEEccCCccc
Q 042359 851 QLSGEIPES----------MSSLTFLNHLNLSNNNLT 877 (979)
Q Consensus 851 ~l~~~ip~~----------l~~l~~L~~L~ls~N~l~ 877 (979)
++++.+|.. +..+++|++|| +|+++
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 776665553 56667777766 55554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.2e-15 Score=151.58 Aligned_cols=162 Identities=16% Similarity=0.218 Sum_probs=93.4
Q ss_pred ccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhcc
Q 042359 621 WMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRM 700 (979)
Q Consensus 621 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L 700 (979)
+.....++.++++.+.+++.+|. ++ .+|..+..+++|++|++++|.+++ +| .+. .+++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L 72 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENL 72 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTC
T ss_pred HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCC
Confidence 33445566666666666665554 00 111244444555555555555443 44 333 45555
Q ss_pred ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS 780 (979)
Q Consensus 701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (979)
+.|++++|+++ .+|..+..+++|+.|++++|++++ +| .+..++.|
T Consensus 73 ~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L-------------------------------- 117 (198)
T 1ds9_A 73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL-------------------------------- 117 (198)
T ss_dssp CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS--------------------------------
T ss_pred CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC--------------------------------
Confidence 55555555555 344444445566666666666653 33 34444433
Q ss_pred cCccchhhhhccceeEEecccCccccccc-ccccCCCCCCEEeCCCCcceeccCCC----------CCccCCCCEEECcC
Q 042359 781 KGEMVDYEDILNLVRMIDISRNNFSGKIP-LEVTNLKALQSLNFSYNSFTGRIPES----------IGVMRSLESIDFSA 849 (979)
Q Consensus 781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------~~~l~~L~~LdLs~ 849 (979)
+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|.. +..+++|+.|| +
T Consensus 118 --------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~ 181 (198)
T 1ds9_A 118 --------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G 181 (198)
T ss_dssp --------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred --------------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence 677777777774322 46777888888888888888777664 77788888887 6
Q ss_pred Ccccc
Q 042359 850 NQLSG 854 (979)
Q Consensus 850 N~l~~ 854 (979)
|.++.
T Consensus 182 ~~i~~ 186 (198)
T 1ds9_A 182 MPVDV 186 (198)
T ss_dssp GGGTT
T ss_pred cccCH
Confidence 66653
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.8e-13 Score=132.20 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=81.5
Q ss_pred eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873 (979)
Q Consensus 794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 873 (979)
++.|+|++|+|++..|..|+++++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..|..+..+++|++|+|++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 47899999999988899999999999999999999977777789999999999999999987778899999999999999
Q ss_pred CcccccCCC
Q 042359 874 NNLTGKIPS 882 (979)
Q Consensus 874 N~l~g~ip~ 882 (979)
|++++..+.
T Consensus 112 N~~~c~c~~ 120 (170)
T 3g39_A 112 NPWDCACSD 120 (170)
T ss_dssp SCBCTTBGG
T ss_pred CCCCCCchh
Confidence 999987653
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2e-13 Score=134.30 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=43.7
Q ss_pred eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCC--CCCccCCCCEEECcCCcccccCCCC----CCCCCCCCE
Q 042359 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPE--SIGVMRSLESIDFSANQLSGEIPES----MSSLTFLNH 868 (979)
Q Consensus 795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L~~ 868 (979)
+.|+|++|++++..|..++.+++|+.|+|++|+++ .+|. .++.+++|+.|++++|+++ .+|.. +..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 44444444444332233355555556666666554 3444 5555666666666666665 34443 556666666
Q ss_pred EEccCCccc
Q 042359 869 LNLSNNNLT 877 (979)
Q Consensus 869 L~ls~N~l~ 877 (979)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 666666554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=1.5e-13 Score=135.27 Aligned_cols=136 Identities=17% Similarity=0.197 Sum_probs=106.8
Q ss_pred cccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhccc
Q 042359 668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG 747 (979)
Q Consensus 668 ~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 747 (979)
.+.++++|+.|++++|+++ .+|. +....++|+.|++++|.+++. ..+..+++|+.|++++|++++..|..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4567888999999999988 5664 332344899999999998865 67888899999999999988554444466555
Q ss_pred CcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccc--cccCCCCCCEEeCCC
Q 042359 748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL--EVTNLKALQSLNFSY 825 (979)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~--~l~~l~~L~~L~Ls~ 825 (979)
| +.|+|++|+++ .+|. .++.+++|+.|++++
T Consensus 90 L----------------------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 90 L----------------------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp C----------------------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred C----------------------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecC
Confidence 5 78999999986 5666 788899999999999
Q ss_pred CcceeccCCC----CCccCCCCEEECcCCccccc
Q 042359 826 NSFTGRIPES----IGVMRSLESIDFSANQLSGE 855 (979)
Q Consensus 826 N~l~~~ip~~----~~~l~~L~~LdLs~N~l~~~ 855 (979)
|.++ .+|.. ++.+++|+.||+++|.+...
T Consensus 123 N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 123 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp SGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 9998 66764 88889999999999887643
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=8.1e-13 Score=129.29 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=79.0
Q ss_pred eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873 (979)
Q Consensus 794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 873 (979)
|+.|+|++|++++..|..|+++++|+.|+|++|+|++..+..|+.+++|++|||++|+|++..|..+..+++|++|+|++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 47899999999988899999999999999999999976666689999999999999999977667799999999999999
Q ss_pred CcccccCC
Q 042359 874 NNLTGKIP 881 (979)
Q Consensus 874 N~l~g~ip 881 (979)
|++.+..+
T Consensus 115 N~~~c~~~ 122 (174)
T 2r9u_A 115 NPWDCECR 122 (174)
T ss_dssp SCBCTTBG
T ss_pred CCcccccc
Confidence 99997654
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=2.9e-11 Score=134.86 Aligned_cols=222 Identities=16% Similarity=0.171 Sum_probs=124.3
Q ss_pred CccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccC
Q 042359 224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF 303 (979)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 303 (979)
+|+.+.+.. .++.+...+|.++++|+.++++.|.++. ++.....+.+|+.+.+..+ +.......|.++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~----------I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~ 225 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK----------LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKT 225 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE----------ECTTTTTTCCCSEEECCTT-CCEECTTTTTTC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE----------echhhEeecccCEEEeCCc-hheehhhHhhCC
Confidence 355555543 4555555566666667777766666653 2222222466777777633 554555666677
Q ss_pred CCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccC
Q 042359 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSN 383 (979)
Q Consensus 304 ~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 383 (979)
++|+.+++..+ ++ .+...+|.+ .+|+.+.+.. .+.......|.++++|+.+.+.++.+....
T Consensus 226 ~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~------------- 287 (401)
T 4fdw_A 226 SQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDP------------- 287 (401)
T ss_dssp TTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCT-------------
T ss_pred CCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCc-------------
Confidence 77777777654 33 454556666 5677777744 344445566777777777777665443100
Q ss_pred CCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEc
Q 042359 384 GLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRV 463 (979)
Q Consensus 384 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 463 (979)
.....+..|.++++|+.+++.+ .++.....+|.+|++|+.+.|..+ ++ .++...|.++ +|+.+++
T Consensus 288 -----------~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 288 -----------EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp -----------TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEE
T ss_pred -----------ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEE
Confidence 0012233455666666666663 355454555666666666666443 33 4555566666 6666666
Q ss_pred cCCcccccccCCCCCc-ccccEEecccc
Q 042359 464 DGNKLTLGVKHDWIPP-FQLVALGLRNC 490 (979)
Q Consensus 464 ~~n~l~~~~~~~~~~~-~~L~~L~l~~~ 490 (979)
.+|.+.......|... ..++.+.+..+
T Consensus 353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 353 EGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred cCCCCcccccccccCCCCCccEEEeCHH
Confidence 6666555555555544 24555555443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=2.4e-11 Score=135.61 Aligned_cols=204 Identities=11% Similarity=0.127 Sum_probs=114.1
Q ss_pred CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeee
Q 042359 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN 360 (979)
Q Consensus 281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~ 360 (979)
+|+.+.+.. .+....+..|.++++|+.+++..|.++ .++..+|. +.+|+.+.+..+ +.......|.++++|+.++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEe
Confidence 455555543 344344445555555555555555554 34344444 355555555532 3434444555555666555
Q ss_pred ccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCc-----ccCcccccCCCCCCE
Q 042359 361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIV-----GLIPESLGQLSTLRV 435 (979)
Q Consensus 361 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~ 435 (979)
+..+ +...... .+.. .+|+.+.+. +.++.....+|.++++|+.+++.+|.+. ...+.+|.+|++|+.
T Consensus 233 l~~~-l~~I~~~----aF~~--~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 233 IPEN-VSTIGQE----AFRE--SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp CCTT-CCEECTT----TTTT--CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred cCCC-ccCcccc----cccc--CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 5543 1111111 1111 226666663 3444555667888888888888877654 345567888888888
Q ss_pred EEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhh
Q 042359 436 LRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLY 501 (979)
Q Consensus 436 L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~ 501 (979)
+++.+ .+. .++...|.++++|+.+.+..+ ++.+...+|... +|+.+.+.++......+..+.
T Consensus 305 l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 305 FEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp ECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred EEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence 88874 454 677778888888888888554 555555555555 555555555544433333333
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=3.8e-12 Score=124.06 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=87.5
Q ss_pred cceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359 700 MVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV 779 (979)
Q Consensus 700 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (979)
.+.+++++|.++ .+|..+. ++|+.|++++|++++..|..+.+++.|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L------------------------------- 56 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQL------------------------------- 56 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence 456677777666 3555553 678888888888887777777766665
Q ss_pred ecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCC
Q 042359 780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIP 857 (979)
Q Consensus 780 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip 857 (979)
+.|||++|+|++..|..|..+++|+.|+|++|+|++..|..|+.+++|+.|+|++|++++..+
T Consensus 57 ---------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 57 ---------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ---------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ---------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 788999999987777778999999999999999997777789999999999999999986543
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=6.7e-11 Score=132.71 Aligned_cols=311 Identities=11% Similarity=0.076 Sum_probs=163.8
Q ss_pred cccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccC
Q 042359 116 NPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSG 195 (979)
Q Consensus 116 ~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~ 195 (979)
..+|.++++|+.+.+.. .++.+ -..+|.+|++|+.+++..+ ++..-...|.++.+|+.+.+..+ +..++... +.+
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a-F~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA-FKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT-TTT
T ss_pred HHHhhCCCCceEEEeCC-CccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee-eec
Confidence 35688889999999974 46654 2567889999999999765 55445567888888988877654 33333322 333
Q ss_pred CCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcc
Q 042359 196 LSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG 275 (979)
Q Consensus 196 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~ 275 (979)
+..++..........+ ...+..+++|+.+.+..+ +..+....|..+.+|+.+++..+ ++. .-...
T Consensus 139 ~~~~~~~~~~~~~~i~----~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~---------I~~~~ 203 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIG----DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI---------IRDYC 203 (394)
T ss_dssp CCCSEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE---------ECTTT
T ss_pred ccccccccCccccccc----hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE---------eCchh
Confidence 3333322222221111 134566677777777543 44555566677777777766554 221 11234
Q ss_pred ccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCC
Q 042359 276 LQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN 355 (979)
Q Consensus 276 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~ 355 (979)
+.++..|+.+.+..+.. .+.........|+.+.+.... . .+....+..+..|+.+.+..+ ........+..+..
T Consensus 204 F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~ 277 (394)
T 4fs7_A 204 FAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSG 277 (394)
T ss_dssp TTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTT
T ss_pred hccccccceeecCCCce--EeehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCC--cceeeccccccccc
Confidence 55666666666655432 122233344566666665432 1 333455666667777666654 22233445555666
Q ss_pred CCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCE
Q 042359 356 LKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRV 435 (979)
Q Consensus 356 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 435 (979)
++.+......+... .+..... |+.+.+..+ ++.....+|.++.+|+.+++.++ ++.....+|.+|++|+.
T Consensus 278 l~~~~~~~~~i~~~-------~F~~~~~-L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 278 LKKVIYGSVIVPEK-------TFYGCSS-LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp CCEEEECSSEECTT-------TTTTCTT-CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE
T ss_pred cceeccCceeeccc-------ccccccc-ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE
Confidence 66555544322110 1111122 455554432 33333344555555555555432 33333444555555555
Q ss_pred EEcCCCcCccccChhhhcCCCCCcEEEcc
Q 042359 436 LRINDNKLNGTLSAIHFANLTKLSWFRVD 464 (979)
Q Consensus 436 L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 464 (979)
+++..+ ++ .++...|.++++|+.+++.
T Consensus 348 i~lp~~-l~-~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 348 INFPLS-LR-KIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECCCTT-CC-EECTTTBTTCTTCCEEEEE
T ss_pred EEECcc-cc-EehHHHhhCCCCCCEEEEC
Confidence 555443 32 4444455555555555544
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=8.7e-12 Score=121.89 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=83.4
Q ss_pred ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS 780 (979)
Q Consensus 701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (979)
+.+++++|+++ .+|..+. ++|+.|++++|++++..|..+.+++.|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------- 59 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-------------------------------- 59 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence 45666666664 5565553 678888888888887777777766655
Q ss_pred cCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc
Q 042359 781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE 855 (979)
Q Consensus 781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ 855 (979)
+.|||++|+|++..+..|..+++|+.|+|++|+|++..+..|+.+++|+.|+|++|++...
T Consensus 60 --------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 60 --------------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp --------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred --------------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7888888888866566678999999999999999976666699999999999999999854
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.28 E-value=1.7e-10 Score=129.34 Aligned_cols=221 Identities=12% Similarity=0.128 Sum_probs=113.4
Q ss_pred cccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcc
Q 042359 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPF 480 (979)
Q Consensus 401 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 480 (979)
.+|.++++|+.+.+.++- ......+|.++++|+.+++..+ ++ .++...|.++..|+.+.+..+.... ...
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i--~~~----- 225 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYL--GDF----- 225 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEE--CTT-----
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEe--ehh-----
Confidence 456677777777776543 3344456677777777777655 22 4555567777777666655543221 111
Q ss_pred cccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEee
Q 042359 481 QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVY 560 (979)
Q Consensus 481 ~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~ 560 (979)
......|+.+.+.... ..+ ....+..+..++.+.+..+...-....+..+.
T Consensus 226 -------------------~~~~~~l~~i~ip~~~-~~i-~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~-------- 276 (394)
T 4fs7_A 226 -------------------ALSKTGVKNIIIPDSF-TEL-GKSVFYGCTDLESISIQNNKLRIGGSLFYNCS-------- 276 (394)
T ss_dssp -------------------TTTTCCCCEEEECTTC-CEE-CSSTTTTCSSCCEEEECCTTCEECSCTTTTCT--------
T ss_pred -------------------hcccCCCceEEECCCc-eec-ccccccccccceeEEcCCCcceeecccccccc--------
Confidence 1122334444332211 111 11112233444444444332211111122222
Q ss_pred cccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCccccc
Q 042359 561 SNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN 640 (979)
Q Consensus 561 ~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 640 (979)
.++.+....+.+. . ..+..+.+|+.+.+.++ +...-..+|.++.+|+.+++.++ ++..
T Consensus 277 -------------~l~~~~~~~~~i~----~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I 334 (394)
T 4fs7_A 277 -------------GLKKVIYGSVIVP----E---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI 334 (394)
T ss_dssp -------------TCCEEEECSSEEC----T---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred -------------ccceeccCceeec----c---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence 3333333322211 1 12234566666666544 33333456777777777777644 5544
Q ss_pred CCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCC
Q 042359 641 LPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGEN 683 (979)
Q Consensus 641 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 683 (979)
-..+|.++++|+.+.+..+ ++.....+|.+|++|+.+++..+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 4567777778888877765 55455567778888888877654
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=2e-13 Score=150.86 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=32.7
Q ss_pred CCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccc-----cCCCCccEEEccCCccc
Q 042359 673 TALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGL-----CDLAFLQILDIADNNLS 735 (979)
Q Consensus 673 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~ 735 (979)
++|++|+|++|.++..-...+...+++|+.|+|++|.++......+ ...++|+.|+|++|.++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCC
Confidence 4566666666665433333333345556666666665543322222 23456666666666664
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=4.6e-11 Score=131.75 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=61.3
Q ss_pred eEEeccc-CcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359 795 RMIDISR-NNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873 (979)
Q Consensus 795 ~~LdLs~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 873 (979)
+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|++|++|+.|||++|+|++..|..+..++ |+.|+|++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 6677775 777766667777777777777777777777777777777777777777777765555555555 77777777
Q ss_pred Cccccc
Q 042359 874 NNLTGK 879 (979)
Q Consensus 874 N~l~g~ 879 (979)
|+|.+.
T Consensus 113 N~~~c~ 118 (347)
T 2ifg_A 113 NPLHCS 118 (347)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 777653
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.04 E-value=3.7e-11 Score=132.70 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=20.1
Q ss_pred cCCCCCCcEEeccCCcCcccC----cccccCCCCCCEEEcCCCcCc
Q 042359 403 LGQFKNIVTLDFANNSIVGLI----PESLGQLSTLRVLRINDNKLN 444 (979)
Q Consensus 403 l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~ 444 (979)
+...++|++|++++|.+++.. ...+...++|++|+|++|.+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 344445555555555554321 122333455555555555554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=4.3e-10 Score=123.86 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=37.2
Q ss_pred eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc
Q 042359 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG 854 (979)
Q Consensus 795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~ 854 (979)
+.|||++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |+.|+|++|++..
T Consensus 59 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 5666666666666666666666666666666666654444444444 6666666666653
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.98 E-value=1.1e-08 Score=114.66 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=60.8
Q ss_pred ccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCC
Q 042359 597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALE 676 (979)
Q Consensus 597 l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 676 (979)
+..++.|+.+.+.++... .-..+|.++++|+.+.+. +.++..-...|.++.+|+.+++..+ ++.....+|.+|++|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 344556666665544322 223455556666666664 2333333445566666666666543 4433345566666666
Q ss_pred EEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCC
Q 042359 677 SLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADN 732 (979)
Q Consensus 677 ~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 732 (979)
.+.+..+ ++ .|....+.++++|+.+++.++.... ..+..+..|+.+.+..+
T Consensus 338 ~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 338 RIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred EEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 6666433 32 4554444455566666555553321 23444555555555444
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.95 E-value=8.8e-08 Score=107.18 Aligned_cols=296 Identities=13% Similarity=0.132 Sum_probs=139.3
Q ss_pred ccccCCC-CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCC---CCCCCccccCCCCCCceEecCCCccccCCcccc
Q 042359 117 PSLLDLK-HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTR---IGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW 192 (979)
Q Consensus 117 ~~l~~l~-~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~---i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~ 192 (979)
.+|.+++ .|+.+.+..+ ++.+ -..+|.++.+|+.+.+..+. ++..-...|.++.+|+.+.+..+ +..++...
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a- 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA- 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT-
T ss_pred hhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh-
Confidence 4566664 5888888654 5554 35678888888888887663 44344556777788887776543 33333221
Q ss_pred ccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccC
Q 042359 193 LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPI 272 (979)
Q Consensus 193 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 272 (979)
+..+.+|+.+.+.. .+..+....+..+.+|+.+.+..+ ++. +
T Consensus 133 F~~c~~L~~i~lp~---------------------------~~~~I~~~~F~~c~~L~~i~~~~~-~~~----------I 174 (394)
T 4gt6_A 133 FHHCEELDTVTIPE---------------------------GVTSVADGMFSYCYSLHTVTLPDS-VTA----------I 174 (394)
T ss_dssp TTTCTTCCEEECCT---------------------------TCCEECTTTTTTCTTCCEEECCTT-CCE----------E
T ss_pred hhhhcccccccccc---------------------------eeeeecccceecccccccccccce-eeE----------e
Confidence 34445555554432 223333334444444444444332 111 1
Q ss_pred CccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCc-------------ccccccCccCEEecCCC
Q 042359 273 PRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS-------------EALGNLTSISWLDLSLN 339 (979)
Q Consensus 273 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~-------------~~l~~l~~L~~L~L~~n 339 (979)
........+|+.+.+..+- .......+..+.+++.......... .++. ..+.....+..+.+..
T Consensus 175 ~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~- 251 (394)
T 4gt6_A 175 EERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN- 251 (394)
T ss_dssp CTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-
T ss_pred ccccccccceeEEEECCcc-cccccchhhhccccceecccccccc-cccceeecccccccccccccccccccceEEcCC-
Confidence 1111112334444443321 1122233444444444433332221 0000 0011112222333322
Q ss_pred CCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcC
Q 042359 340 MGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSI 419 (979)
Q Consensus 340 ~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 419 (979)
.+.......|..+..|+.+.+..+... +.. ..+..... |+.+.+. +.++......|.++.+|+.+++..+ +
T Consensus 252 -~v~~i~~~aF~~c~~L~~i~lp~~~~~--I~~---~aF~~c~~-L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v 322 (394)
T 4gt6_A 252 -GVARIETHAFDSCAYLASVKMPDSVVS--IGT---GAFMNCPA-LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-I 322 (394)
T ss_dssp -TEEEECTTTTTTCSSCCEEECCTTCCE--ECT---TTTTTCTT-CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred -cceEcccceeeecccccEEecccccce--ecC---cccccccc-cccccCC-CcccccCceeecCCCCcCEEEeCCc-c
Confidence 122222334555555555555432211 100 01111222 5555553 2233333445666677777776643 4
Q ss_pred cccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcc
Q 042359 420 VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL 468 (979)
Q Consensus 420 ~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l 468 (979)
+.....+|.+|++|+.+.+..+ ++ .+....|.++++|+.+++.++..
T Consensus 323 ~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 323 TQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred cEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence 4444556667777777776543 33 55666677777777776666543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=8.3e-09 Score=112.72 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=46.1
Q ss_pred ceeEEecccCcccccccccc---cCCCCCCEEeCCCCcceec----cCCCCCccCCCCEEECcCCcccccCCCCCCC-CC
Q 042359 793 LVRMIDISRNNFSGKIPLEV---TNLKALQSLNFSYNSFTGR----IPESIGVMRSLESIDFSANQLSGEIPESMSS-LT 864 (979)
Q Consensus 793 ~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-l~ 864 (979)
.|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|||++|.++...-..+.. +
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al- 331 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL- 331 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence 34555555555543333222 2356677777777777653 4455556677777777777776543222322 2
Q ss_pred CCCEEEccCCc
Q 042359 865 FLNHLNLSNNN 875 (979)
Q Consensus 865 ~L~~L~ls~N~ 875 (979)
...+|++.|+
T Consensus 332 -g~~~~~~~~~ 341 (362)
T 2ra8_A 332 -PMKIDVSDSQ 341 (362)
T ss_dssp -CSEEECCSBC
T ss_pred -CCEEEecCCc
Confidence 3457777765
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=2.4e-08 Score=109.07 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=75.0
Q ss_pred CCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccc--ccCccCEEecCCCC-CCccc---
Q 042359 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG--NLTSISWLDLSLNM-GIEGR--- 345 (979)
Q Consensus 272 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L~~L~L~~n~-~l~~~--- 345 (979)
+...+..+++|+.|++++|.-. .++. + .+++|++|++..+.+.... ...+. .+++|++|+|+.+. ...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEeccccccccchhH
Confidence 3344455666666666665211 1222 2 2566666666666554322 22232 45666666664210 00000
Q ss_pred --Ccccc--cCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcc
Q 042359 346 --IPRSM--ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVG 421 (979)
Q Consensus 346 --~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 421 (979)
+...+ ..+++|+.|++.+|.+....+..+. ....+++|++|+|+.|.+.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la--------------------------~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL--------------------------ESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH--------------------------HCSSGGGCSEEECCSSCCBH
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH--------------------------hCccCCCCCEEECCCCCCCh
Confidence 00111 1345666666655555433222110 00134566666666666654
Q ss_pred cC----cccccCCCCCCEEEcCCCcCccccChhhhcC-CCCCcEEEccCCc
Q 042359 422 LI----PESLGQLSTLRVLRINDNKLNGTLSAIHFAN-LTKLSWFRVDGNK 467 (979)
Q Consensus 422 ~~----p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~-l~~L~~L~L~~n~ 467 (979)
.. +..+..+++|+.|++++|.++... ...+.. + ...++++.++
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~-~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEM-KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCHHH-HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCHHH-HHHHHHHc--CCEEEecCCc
Confidence 32 222334566777777777665321 112222 2 2446666655
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=4.1e-06 Score=93.10 Aligned_cols=310 Identities=12% Similarity=0.108 Sum_probs=157.9
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCC
Q 042359 119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSF 198 (979)
Q Consensus 119 l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~ 198 (979)
+..-.+|+.+.+.. .++.+ -..+|.+|.+|+.++|..+ ++.+-...|.++ +|+.+.+..+ +..++...+ .. .+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF-~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVF-QG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTT-TT-CC
T ss_pred cccccCCEEEEeCC-CccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecccee-cc-CC
Confidence 44456677777753 34443 2456778888888888654 554445566666 5777666543 444444332 22 25
Q ss_pred CCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCccc---ccCCcc
Q 042359 199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVF---GPIPRG 275 (979)
Q Consensus 199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~p~~ 275 (979)
|+.+.+..+- ..... ..+... +++.+.+.. .++.+....+..+.+++...+..+............ ......
T Consensus 115 L~~i~lp~~~-~~i~~--~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGN--YIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CSEEECCTTC-CEECT--TTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred cccccCCCcc-ccccc--cccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecc
Confidence 6666665431 11111 112222 444444432 244445555666666666666544322100000000 001112
Q ss_pred ccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCC
Q 042359 276 LQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN 355 (979)
Q Consensus 276 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~ 355 (979)
+.....+..+.+.... .......+..+.+|+.+.+..+- . .+...++.++..|+.+.+..+ ++......+.++.+
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTA 264 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTT
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC--ccEeCccccceeeh
Confidence 2223333333333221 11222333344445555443331 1 222334444555555554432 22222333444444
Q ss_pred CCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCE
Q 042359 356 LKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRV 435 (979)
Q Consensus 356 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 435 (979)
++.+.+..+ +.......|.++++|+.+.+.++.++.....+|.+|.+|+.
T Consensus 265 -----------------------------l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 265 -----------------------------LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp -----------------------------CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred -----------------------------hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 444444322 22333446778888888888888777776778888888888
Q ss_pred EEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCC
Q 042359 436 LRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIP 478 (979)
Q Consensus 436 L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 478 (979)
+.|..+ ++ .+....|.++.+|+.+.+..+ ++.+...+|..
T Consensus 315 i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 315 VTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp EECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred EEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 888654 43 677778888888888888654 55444555543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.55 E-value=6.7e-06 Score=91.35 Aligned_cols=47 Identities=6% Similarity=0.124 Sum_probs=32.4
Q ss_pred cccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccc
Q 042359 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFW 191 (979)
Q Consensus 143 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~ 191 (979)
++....+|+.+.+... ++.+-...|.++.+|+.+++..+ +..++..+
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a 87 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGA 87 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhh
Confidence 4556678888888653 55455667889999999998654 55555443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=1e-08 Score=105.95 Aligned_cols=141 Identities=20% Similarity=0.106 Sum_probs=79.9
Q ss_pred CCccccceeccCCCCcEEEEECCCCCCCC-----ch------hhHHHhhccccccccc-ccccCCCCCCE--EeCCCCCC
Q 042359 70 DCCAWAGVFCDNITGHVLHLDLRNPFNYH-----KE------SEYEAIRRTALVGKIN-PSLLDLKHLSY--LDLSFNDF 135 (979)
Q Consensus 70 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~-----~~------~~~~~~~~~~l~~~~~-~~l~~l~~L~~--L~Ls~n~i 135 (979)
.-|.|.|+.|+....+|..+...+..... .. ..+...|.+...+.++ +.+...+.|+. ++++.|..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 35889999997544455444443311000 00 1222334444445444 23555555655 66666643
Q ss_pred CCCC--ccccccCCCCCCEEEcCCCCCCC--CCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCC
Q 042359 136 QGIQ--IPRFFGSMGNLRYLNLSRTRIGG--MIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK 211 (979)
Q Consensus 136 ~~~~--lp~~~~~l~~L~~L~Ls~n~i~~--~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~ 211 (979)
.... ++....++++|++|+|++|+|++ .+|..+..+++|++|+|++|.+..++....+..+ +|++|++++|.+.+
T Consensus 156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 3210 11122467888899999988887 3456667888888888888887766543333333 56666666655543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=2.9e-08 Score=102.53 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=28.4
Q ss_pred ceeEEecccCcccc--cccccccCCCCCCEEeCCCCcceeccCCCCCccC--CCCEEECcCCcccccCC
Q 042359 793 LVRMIDISRNNFSG--KIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR--SLESIDFSANQLSGEIP 857 (979)
Q Consensus 793 ~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~--~L~~LdLs~N~l~~~ip 857 (979)
.|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34455555555544 3334444455555555555555432 1223332 44444444444444433
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=1.2e-07 Score=93.18 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=55.3
Q ss_pred CCCcEEEcccc-cccccCChhhhhcccCCCcccEEeccCcccccc----CCccccCCCCCCEEEccCCccccc----CCc
Q 042359 573 SNLVFLDLSNN-LFSGSISPFLCYRINETKSLNALQLNDNYLNGE----LPDCWMSYQNLKTLKLSNNKFTGN----LPY 643 (979)
Q Consensus 573 ~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~ 643 (979)
++|++|++++| .+.......++..+...++|++|+|++|.+... +...+...++|++|+|++|.|... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45566666666 555444444444445555666666666655432 122233344555555555555432 233
Q ss_pred ccCCCCCccEEEc--CCcccccc----ccccccCCCCCCEEeccCCcc
Q 042359 644 SMGSLTSLVWLHL--GENRLSGN----ILVSLKNCTALESLDVGENEF 685 (979)
Q Consensus 644 ~l~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l 685 (979)
.+...++|++|+| ++|.+... +...+...++|++|++++|.+
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3444455555555 44555432 122333445555555555554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.18 E-value=4.1e-07 Score=89.41 Aligned_cols=42 Identities=7% Similarity=0.019 Sum_probs=18.1
Q ss_pred cCCCCCccEEEccCCCCCCCCh----hhhcCCCCCCEEECCCCCCC
Q 042359 219 TNKLPSLVELRLANCQLHHFSL----LATANFSSLTVLDLSDNQFD 260 (979)
Q Consensus 219 ~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~ 260 (979)
+...++|++|+|++|.+..... ..+...++|++|+|++|.++
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3344444444444444443221 22233344555555555444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.3e-05 Score=76.38 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=60.3
Q ss_pred CCCCEEeccCCcCcccCchhhccCCCCCEEeccCCc-CccccCccccccc----CccCEEecCCCCCCcccCcccccCCC
Q 042359 280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNS-LQGTIDSEALGNL----TSISWLDLSLNMGIEGRIPRSMASLC 354 (979)
Q Consensus 280 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l----~~L~~L~L~~n~~l~~~~~~~l~~l~ 354 (979)
-+|++||+++|.++..--..+.++++|++|+|++|. +++.- ...++.+ ++|++|++++|..+++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 467888888887766555556778888888888875 54322 4445543 46888888888667776666677788
Q ss_pred CCCeeeccCcc
Q 042359 355 NLKSLNLRGVH 365 (979)
Q Consensus 355 ~L~~L~L~~n~ 365 (979)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=1.8e-05 Score=75.44 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=15.6
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCC
Q 042359 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRT 158 (979)
Q Consensus 124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n 158 (979)
.|+.||++++.|+.. --..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCC
Confidence 455555555554432 1223344455555555544
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.00076 Score=61.25 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=33.0
Q ss_pred EEeCCCCcce-eccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359 820 SLNFSYNSFT-GRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG 878 (979)
Q Consensus 820 ~L~Ls~N~l~-~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 878 (979)
.++.+++.++ ..+|..+. .+|+.|||++|+|+..-+..|..+++|++|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555555554 24444333 356666666666665545556666666677777776653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.03 E-value=0.00014 Score=70.62 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=64.5
Q ss_pred CCCcEEEcccc-cccccCChhhhhcccCCCcccEEeccCccccccC----CccccCCCCCCEEEccCCccccc----CCc
Q 042359 573 SNLVFLDLSNN-LFSGSISPFLCYRINETKSLNALQLNDNYLNGEL----PDCWMSYQNLKTLKLSNNKFTGN----LPY 643 (979)
Q Consensus 573 ~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p~ 643 (979)
+.|++|+|++| .+.......++..+...+.|+.|+|++|.+...- .+.+..-+.|++|+|++|.|... +-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 46777777764 6655544556666666677777777777776432 22333446677777777777532 222
Q ss_pred ccCCCCCccEEEcCCc---cccc----cccccccCCCCCCEEeccCCcc
Q 042359 644 SMGSLTSLVWLHLGEN---RLSG----NILVSLKNCTALESLDVGENEF 685 (979)
Q Consensus 644 ~l~~l~~L~~L~L~~n---~l~~----~~p~~l~~l~~L~~L~L~~N~l 685 (979)
.+..-+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3444456677776654 2221 1233444555666666665543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.70 E-value=0.00061 Score=66.17 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=19.9
Q ss_pred hhcCCCCCccEEEccCCCCCCCCh----hhhcCCCCCCEEECCCCCCC
Q 042359 217 MVTNKLPSLVELRLANCQLHHFSL----LATANFSSLTVLDLSDNQFD 260 (979)
Q Consensus 217 ~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~ 260 (979)
..+..-+.|++|+|++|++..... ..+..-+.|++|+|++|.+.
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 334444455555555555443322 22233344555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.42 E-value=0.0038 Score=56.60 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=48.8
Q ss_pred eEEecccCccc-ccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc
Q 042359 795 RMIDISRNNFS-GKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG 854 (979)
Q Consensus 795 ~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~ 854 (979)
..+|.+++.++ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 57899999997 56776553 469999999999996666778999999999999998864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.59 E-value=94 Score=25.76 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=16.9
Q ss_pred ccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcC
Q 042359 400 TDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIN 439 (979)
Q Consensus 400 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 439 (979)
...|.++.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 334444555555544432 222333344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.73 E-value=60 Score=26.97 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=38.5
Q ss_pred CcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCc
Q 042359 417 NSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNK 467 (979)
Q Consensus 417 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~ 467 (979)
..++.+...+|.+|++|+.+.|-.+- + .+....|.++.+|+.+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~-~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-G-LLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-S-CCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-h-eEcHHHHhccCCccEEEEcCCC
Confidence 34555666789999999999998753 2 6777789999999999997653
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.97 E-value=51 Score=21.88 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=4.7
Q ss_pred eehhHHHHHHH
Q 042359 934 SAALGFVVGFW 944 (979)
Q Consensus 934 ~~~~~~~~~~~ 944 (979)
++++|.++++.
T Consensus 15 GiVvG~v~gv~ 25 (38)
T 2k1k_A 15 AVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehHHHHHHH
Confidence 33444444443
Done!