BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042362
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 138/241 (57%), Gaps = 23/241 (9%)
Query: 65 ITKKETIPVGPLV----QEPVYTDNNDDTKIMDWLSRKEPSSVVYVSFGSEYFLSQEEMN 120
+ K PVGPLV QE ++++ + WL + SV+YVSFGS L+ E++N
Sbjct: 231 LDKPPVYPVGPLVNIGKQE---AKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLN 287
Query: 121 EIASGLLLSEVSFIWVVR----------FHSEGKFTIEEALPQSFSKEIQGNNKGMVVQG 170
E+A GL SE F+WV+R F S + LP F + + +G V+
Sbjct: 288 ELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK--KRGFVIPF 345
Query: 171 WAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVA-DIGVGLE 229
WAPQA++L H S GGF++HCGW ST+E ++ G+P+IA P+ +Q NA +++ DI L
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR 405
Query: 230 VPREEINQRVRKKDLARVIKQVVEQEEGQQIKRKAKELSESIKKKGDDEEINVVEKLLQL 289
PR + VR++++ARV+K ++E EEG+ ++ K KEL E+ + D+ + K L L
Sbjct: 406 -PRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTST--KALSL 462
Query: 290 V 290
V
Sbjct: 463 V 463
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 141/257 (54%), Gaps = 52/257 (20%)
Query: 46 VLIKTSRDIESKYLDYFSYITKKETIPVGPL---------VQEPVYTDNN---DDTKIMD 93
+L+ T ++ES ++ S T P+GPL + + D+N +DT+ +D
Sbjct: 229 ILLNTFNELESDVINALSS-TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLD 287
Query: 94 WLSRKEPSSVVYVSFGSEYFLSQEEMNEIASGLLLSEVSFIWVVR----------FHSEG 143
WL KEP SVVYV+FGS ++ E++ E A GL + SF+W++R F SE
Sbjct: 288 WLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSE- 346
Query: 144 KFTIEEALPQSFSKEIQGNNKGMVVQGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGV 203
F+ EI ++G++ W PQ K+L H SIGGF++HCGW ST E I GV
Sbjct: 347 -----------FTNEIA--DRGLIAS-WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGV 392
Query: 204 PIIAVPMVLDQLFNAKMVAD---IGVGLEVPREEINQRVRKKDLARVIKQVVEQEEGQQI 260
P++ P DQ + + + + IG+ EI+ V++++LA++I +V+ ++G+++
Sbjct: 393 PMLCWPFFADQPTDCRFICNEWEIGM-------EIDTNVKREELAKLINEVIAGDKGKKM 445
Query: 261 KRKAKELSESIKKKGDD 277
K+KA EL KKK ++
Sbjct: 446 KQKAMEL----KKKAEE 458
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 124/249 (49%), Gaps = 31/249 (12%)
Query: 51 SRDIESKYLDYFSYITKKETIPVGP--LVQEPVYTDNNDDTKIMDWLSRKEPSSVVYVSF 108
+ D++SK Y + +GP L+ P N T + WL ++P+SVVY+SF
Sbjct: 230 TNDLKSKLKTYLN---------IGPFNLITPPPVVPNT--TGCLQWLKERKPTSVVYISF 278
Query: 109 GSEYFLSQEEMNEIASGLLLSEVSFIWVVRFHSEGKFTIEEALPQSFSKEIQGNNKGMVV 168
G+ E+ ++ L S V FIW +R + LP+ F ++ +G GMVV
Sbjct: 279 GTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH------LPEGFLEKTRG--YGMVV 330
Query: 169 QGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGL 228
WAPQA++L H ++G FV+HCGW S E + GVP+I P DQ N +MV D+ L
Sbjct: 331 P-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDV---L 386
Query: 229 EVPREEINQRVRKKDLARVIKQVVEQEEGQQIKRKAKELSES----IKKKGDDEEINVVE 284
E+ K L Q++ QE+G++++ + L E+ + KG E N +
Sbjct: 387 EIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTE-NFI- 444
Query: 285 KLLQLVKAP 293
L+ LV P
Sbjct: 445 TLVDLVSKP 453
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 24/238 (10%)
Query: 44 KLVLIKTSRDIESKYLDYFSYITKKETIP----VGPLV----QEPVYTDNNDDTKIMDWL 95
K +++ T D+E +D + E IP VGPL+ Q D I+ WL
Sbjct: 213 KGIIVNTFSDLEQSSID--ALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWL 270
Query: 96 SRKEPSSVVYVSFGSE-YFLSQEEMNEIASGLLLSEVSFIWVVRFHSEGKFTIEEALPQS 154
+ SVV++ FGS ++ EIA GL S V F+W ++ P+
Sbjct: 271 DEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEG 323
Query: 155 FSKEIQGNNKGMVVQGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQ 214
F + ++ KGM+ GWAPQ ++L H +IGGFVSHCGW S +E + +GVPI+ P+ +Q
Sbjct: 324 FLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382
Query: 215 LFNA-KMVAD--IGVGLEVPREEINQRVRKKDLARVIKQVVEQEEGQQIKRKAKELSE 269
NA ++V + +G+GL V + + V +++ + +K +++++ + +K +E+ E
Sbjct: 383 QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD--SIVHKKVQEMKE 438
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 24/238 (10%)
Query: 44 KLVLIKTSRDIESKYLDYFSYITKKETIP----VGPLV----QEPVYTDNNDDTKIMDWL 95
K +++ T D+E +D + E IP VGPL+ Q D I+ WL
Sbjct: 213 KGIIVNTFSDLEQSSID--ALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWL 270
Query: 96 SRKEPSSVVYVSFGSEYF-LSQEEMNEIASGLLLSEVSFIWVVRFHSEGKFTIEEALPQS 154
+ SVV++ FGS ++ EIA GL S V F+W ++ P+
Sbjct: 271 DEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEG 323
Query: 155 FSKEIQGNNKGMVVQGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQ 214
F + ++ KGM+ GWAPQ ++L H +IGGFVSHCGW S +E + +GVPI+ P+ +Q
Sbjct: 324 FLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382
Query: 215 LFNA-KMVAD--IGVGLEVPREEINQRVRKKDLARVIKQVVEQEEGQQIKRKAKELSE 269
NA ++V + +G+GL V + + V +++ + +K +++++ + +K +E+ E
Sbjct: 383 QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD--SIVHKKVQEMKE 438
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 20/225 (8%)
Query: 73 VGPLVQEPVYTDNNDDTKIMDWLSRKEPSSVVYVSFGSEYFLSQEEMNEIASGLLLSEVS 132
VGP +D+ ++WL + E SSVVY+SFGS E+ +A L
Sbjct: 245 VGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFP 304
Query: 133 FIWVVRFHSEGKFTIEEALPQSFSKEIQGNNKGMVVQGWAPQAKILGHGSIGGFVSHCGW 192
FIW R + E LP+ F + + KG +V WAPQ +IL H S+G F++H GW
Sbjct: 305 FIWSFRGDPK------EKLPKGFLERTK--TKGKIV-AWAPQVEILKHSSVGVFLTHSGW 355
Query: 193 GSTVEGIMYGVPIIAVPMVLDQLFNAKM---VADIGVGLEVPREEINQRVRKKDLARVIK 249
S +E I+ GVP+I+ P DQ N + V +IGVG++ N + K+ + + ++
Sbjct: 356 NSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD------NGVLTKESIKKALE 409
Query: 250 QVVEQEEGQQIKRKAKELSESIKKKGDDEEINVVE--KLLQLVKA 292
+ E+G +++K +L ES K + + ++ L+Q+V +
Sbjct: 410 LTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 168 VQGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVG 227
V W PQ IL S F++H G GST+E + VP++AVP + +Q NA+ + ++G+G
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLG 366
Query: 228 LEVPREEIN-QRVRKKDLA 245
+PR+++ +++R+ LA
Sbjct: 367 RHIPRDQVTAEKLREAVLA 385
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 168 VQGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVG 227
V W PQ IL + FV+H G G + EG+ P+IAVP +DQ NA M+ +GV
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVA 344
Query: 228 LEVPREEINQRVRKK---------DLARVIKQVVEQEEGQQIKRKAKELSES 270
++ EE + ++ ++AR ++++ + + R+A +L E+
Sbjct: 345 RKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEA 396
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 63/171 (36%), Gaps = 18/171 (10%)
Query: 93 DWLSRKEPSSVVYVSFGSEYF-LSQEEMNEIASGLLLSEVSFIWVVRFHSEGKFTIEEAL 151
D++ + VV S GS ++E N IAS L +W RF T+ L
Sbjct: 13 DFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLW--RFDGNKPDTL--GL 68
Query: 152 PQSFSKEIQGNNKGMVVQGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMV 211
K W PQ +LGH F++H G E I +G+P + +P+
Sbjct: 69 NTRLYK-------------WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLF 115
Query: 212 LDQLFNAKMVADIGVGLEVPREEINQRVRKKDLARVIKQVVEQEEGQQIKR 262
DQ N G + V + L RVI +E ++ R
Sbjct: 116 ADQPDNIAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKLSR 166
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
Query: 82 YTDNNDDTKIMDWLSRKEPSSVVYVSFGSEYFLSQEEMNEIASGLLLSEVSFIWVVRFHS 141
Y ND + RK+P + ++FG+ L N I GL L + + +
Sbjct: 209 YNGRNDQVPSWVFEERKQPR--LCLTFGTRVPLPN--TNTIPGGLSLLQALSQELPKL-- 262
Query: 142 EGKFTIEEALPQSFSKEIQGNNKGMVVQGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMY 201
F + A+ ++ +Q +G++ G P + I + V H G G+T+ +
Sbjct: 263 --GFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIXPACDV--VVHHGGHGTTLTCLSE 318
Query: 202 GVPIIAVPMVLDQLFNAKMVADIGVGLEVPREEINQRVRKKDLARV 247
GVP ++VP++ + +A+++ G G+EVP E+ AR+
Sbjct: 319 GVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARI 364
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
Query: 82 YTDNNDDTKIMDWLSRKEPSSVVYVSFGSEYFLSQEEMNEIASGLLLSEVSFIWVVRFHS 141
Y ND + RK+P + ++FG+ L N I GL L + + +
Sbjct: 210 YNGRNDQVPSWVFEERKQPR--LCLTFGTRVPLPN--TNTIPGGLSLLQALSQELPKL-- 263
Query: 142 EGKFTIEEALPQSFSKEIQGNNKGMVVQGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMY 201
F + A+ ++ +Q +G++ G P + I + V H G G+T+ +
Sbjct: 264 --GFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIXPACDV--VVHHGGHGTTLTCLSE 319
Query: 202 GVPIIAVPMVLDQLFNAKMVADIGVGLEVPREEINQRVRKKDLARV 247
GVP ++VP++ + +A+++ G G+EVP E+ AR+
Sbjct: 320 GVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARI 365
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 171 WAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEV 230
W P K+L ++ V+H G G+ E + +G P++ VP D A+ V +G+G +
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVL 361
Query: 231 PREEIN 236
P E+ +
Sbjct: 362 PGEKAD 367
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 171 WAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEV 230
W P K+L ++ V+H G G+ E + +G P++ VP D A+ V +G+G +
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVL 361
Query: 231 PREEIN 236
P E+ +
Sbjct: 362 PGEKAD 367
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 181 GSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGL 228
G + V H G G+T G P + VP DQ + A VAD+GVG+
Sbjct: 283 GRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGV 330
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 181 GSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGL 228
G + + H G G+T G P I +P + DQ + A VA++GVG+
Sbjct: 300 GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGV 347
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 94 WLSRKEPS-SVVYVSFGSEYFLSQEEMNEIASGLLLSEVSFIWVVRFHSEGKFTIEEALP 152
WLS ++ + +VY++ G+ + E + GL + + +L
Sbjct: 234 WLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVL----------VASGPSLD 283
Query: 153 QSFSKEIQGNNKGMVVQGWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVL 212
S E+ N + ++ W PQA +L H + V H G G+T+ + GVP ++ P
Sbjct: 284 VSGLGEVPANVR---LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAG 338
Query: 213 DQL 215
D
Sbjct: 339 DSF 341
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 170 GWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLE 229
G+ P +L + V H G GS ++GVP + +P D A+ + G G+
Sbjct: 325 GFVPMHALLP--TCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIA 382
Query: 230 VPREEINQRVRKKDLARVIKQVVEQEEGQQIK 261
+P E+ ++ + RV+ + +++
Sbjct: 383 LPVPELTPDQLRESVKRVLDDPAHRAGAARMR 414
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 17/124 (13%)
Query: 170 GWAPQAKILGHGSIGGFVSHCGWGSTVEGIMYGVPIIAVP--MVLDQLFNAKMVADIGVG 227
GW P + + V H G ST+ G+ GVP + +P VL+ A+ VAD G
Sbjct: 269 GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKGSVLEA--PARRVADYGAA 324
Query: 228 LE-VPREEINQRVRKKDLARVIKQVVEQEEGQQIKRKAKELSESIKKKGDDEEINVVEKL 286
+ +P E+ + + E + R+A++LS I G VV L
Sbjct: 325 IALLPGEDSTE--------AIADSCQELQAKDTYARRAQDLSREI--SGMPLPATVVTAL 374
Query: 287 LQLV 290
QL
Sbjct: 375 EQLA 378
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 181 GSIGGFVSHCGWGSTVEGIMYGVPIIA----VPMVLDQLFNAKMVADIGVGLEV--PREE 234
G + + H G+T+ + G+P I V V++Q ++A VA++GVG+ V P
Sbjct: 285 GRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPVPT 344
Query: 235 INQRVRKKDLARVIKQVVEQEEGQQIKRKAKELSESIKKKG 275
I+ + ++ +I+ +A ++++I+ G
Sbjct: 345 IDS----------LSAALDTALAPEIRARATTVADTIRADG 375
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 191 GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPREE 234
G G+ G+P + +P DQ A+ +A G G+ +P E+
Sbjct: 295 GSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQ 338
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 191 GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPREE 234
G G+ G+P + +P DQ A+ +A G G+ +P E+
Sbjct: 295 GSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQ 338
>pdb|2EWS|A Chain A, Crystal Structure Of S.Aureus Pantothenate Kinase
pdb|2EWS|B Chain B, Crystal Structure Of S.Aureus Pantothenate Kinase
Length = 287
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 225 GVGLEVPREEINQRVRKKDLARVIKQVVEQEEGQQIKR 262
G +++ +E+ NQR K +L + I QVVE QQI++
Sbjct: 29 GTLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQIEK 66
>pdb|2XC1|A Chain A, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|B Chain B, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|C Chain C, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
Length = 666
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 64 YITKKETIPVGPLVQEPVYTDNNDDTKI 91
YI + +T PV P Q PVY +N D + +
Sbjct: 31 YIGQIDTDPVNPANQIPVYIENEDGSHV 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,521,548
Number of Sequences: 62578
Number of extensions: 348181
Number of successful extensions: 1124
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 44
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)