BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042366
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 163/387 (42%), Gaps = 85/387 (21%)
Query: 2 ITTLDLRNNRIQGSILV-----PPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNN 56
+ TLDL +N G IL P + + + NN +G+IPP++ + S L L LS N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 57 LSGTIPPCLGNFST-----------------------ELITLHLKNNSLEGHIHDTFANA 93
LSGTIP LG+ S L TL L N L G I +N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 94 I----VNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPF---QALRIID 146
+++ NN + P W+G L L IL L +N F G NI ++L +D
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-----NIPAELGDCRSLIWLD 541
Query: 147 LSHNEFTGFLP------------------RRIFPSMEAMKN-VDEQGRLEYMGGAFYDE- 186
L+ N F G +P R ++ + MK G L G ++
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 187 ---------SITQKIL-------------VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLN 224
+IT ++ +MF +D S N G IP+ +G+ L +LN
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 225 LSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXHSRLWGRIPQ 284
L HN ++G+IP ++ L LDLS NKLDGRIP+ ++ L G IP+
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Query: 285 GNQFNTFANDSYFGNIHLCGEPLTMRC 311
QF TF + N LCG PL RC
Sbjct: 720 MGQFETFPPAKFLNNPGLCGYPLP-RC 745
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 131/304 (43%), Gaps = 29/304 (9%)
Query: 5 LDLRNNRIQGSI-LVPPPSTEVFL--VSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTI 61
LD+ N++ G TE+ L +S+N+ G IPP L LQYLSL++N +G I
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI 282
Query: 62 PPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVL 121
P L L L L N G + F + + ++S++F G LP+ +L +
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS---GELPMDTLLKM 339
Query: 122 RSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGG 181
R L+++DLS NEF+G LP + ++ +D + G
Sbjct: 340 R------------------GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGP 380
Query: 182 AFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 241
++ Q + + +N F G+IP L N L L+LS N L+G IP S ++
Sbjct: 381 IL--PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 242 TALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXHSRLWGRIPQGNQFNTFANDSYFGNIH 301
+ L L L N L+G IP++ + L G IP G T N N
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 302 LCGE 305
L GE
Sbjct: 499 LTGE 502
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 2 ITTLDLRNNRIQGSILVPP-----PSTEVFLVSNNKLSGRIP-PSICSLSFLQYLSLSDN 55
+T LDL N G+ VPP E +S+N SG +P ++ + L+ L LS N
Sbjct: 293 LTGLDLSGNHFYGA--VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 56 NLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPV 115
SG +P L N S L+TL L +N+ G I N N +N
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKN---------------T 392
Query: 116 LKILVLRSNRFDG--PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQ 173
L+ L L++N F G P SN + L + LS N +G +P + S+ ++ D +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCS----ELVSLHLSFNYLSGTIPSSL-GSLSKLR--DLK 445
Query: 174 GRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 233
L + G E + K L +DF N GEIP L N +L ++LS+N LTG
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETL-ILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 234 IPVSFENMTALESLDLSFNKLDGRIPEQ 261
IP + L L LS N G IP +
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAE 530
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 101/271 (37%), Gaps = 85/271 (31%)
Query: 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNL 57
N+ + L NNR+ G I + + + +SNN SG IP + L +L L+ N
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 58 SGTIPPCL--------GNFSTELITLHLKNNSLE-------------------------- 83
+GTIP + NF +++KN+ ++
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 84 -----------GHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDG 128
GH TF N +++ NM S P +GS+P L IL L N G
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 129 PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESI 188
+ + + L I+DLS N+ G +P+ +M A
Sbjct: 668 SIPDE--VGDLRGLNILDLSSNKLDGRIPQ----AMSA---------------------- 699
Query: 189 TQKILVMFRAMDFSSNRFHGEIPEVLGNFKS 219
L M +D S+N G IPE +G F++
Sbjct: 700 ----LTMLTEIDLSNNNLSGPIPE-MGQFET 725
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 29/193 (15%)
Query: 69 STELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDG 128
S L +L L NSL G + +TS LGS LK L + SN D
Sbjct: 96 SASLTSLDLSRNSLSGPV------------TTLTS------LGSCSGLKFLNVSSNTLDF 137
Query: 129 PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG--GAFYDE 186
P S +L ++DLS N +G ++ D G L+++ G
Sbjct: 138 PGKVSG-GLKLNSLEVLDLSANSISG-------ANVVGWVLSDGCGELKHLAISGNKISG 189
Query: 187 SITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 246
+ V +D SSN F IP LG+ +L+ L++S N L+G+ + T L+
Sbjct: 190 DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 247 LDLSFNKLDGRIP 259
L++S N+ G IP
Sbjct: 249 LNISSNQFVGPIP 261
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 163/387 (42%), Gaps = 85/387 (21%)
Query: 2 ITTLDLRNNRIQGSILV-----PPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNN 56
+ TLDL +N G IL P + + + NN +G+IPP++ + S L L LS N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 57 LSGTIPPCLGNFST-----------------------ELITLHLKNNSLEGHIHDTFANA 93
LSGTIP LG+ S L TL L N L G I +N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 94 I----VNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPF---QALRIID 146
+++ NN + P W+G L L IL L +N F G NI ++L +D
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-----NIPAELGDCRSLIWLD 544
Query: 147 LSHNEFTGFLP------------------RRIFPSMEAMKN-VDEQGRLEYMGGAFYDE- 186
L+ N F G +P R ++ + MK G L G ++
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 187 ---------SITQKIL-------------VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLN 224
+IT ++ +MF +D S N G IP+ +G+ L +LN
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 225 LSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXHSRLWGRIPQ 284
L HN ++G+IP ++ L LDLS NKLDGRIP+ ++ L G IP+
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Query: 285 GNQFNTFANDSYFGNIHLCGEPLTMRC 311
QF TF + N LCG PL RC
Sbjct: 723 MGQFETFPPAKFLNNPGLCGYPLP-RC 748
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 131/304 (43%), Gaps = 29/304 (9%)
Query: 5 LDLRNNRIQGSI-LVPPPSTEVFL--VSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTI 61
LD+ N++ G TE+ L +S+N+ G IPP L LQYLSL++N +G I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI 285
Query: 62 PPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVL 121
P L L L L N G + F + + ++S++F G LP+ +L +
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS---GELPMDTLLKM 342
Query: 122 RSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGG 181
R L+++DLS NEF+G LP + ++ +D + G
Sbjct: 343 R------------------GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGP 383
Query: 182 AFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 241
++ Q + + +N F G+IP L N L L+LS N L+G IP S ++
Sbjct: 384 IL--PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 242 TALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXHSRLWGRIPQGNQFNTFANDSYFGNIH 301
+ L L L N L+G IP++ + L G IP G T N N
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 302 LCGE 305
L GE
Sbjct: 502 LTGE 505
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 2 ITTLDLRNNRIQGSILVPP-----PSTEVFLVSNNKLSGRIP-PSICSLSFLQYLSLSDN 55
+T LDL N G+ VPP E +S+N SG +P ++ + L+ L LS N
Sbjct: 296 LTGLDLSGNHFYGA--VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 56 NLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPV 115
SG +P L N S L+TL L +N+ G I N N +N
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKN---------------T 395
Query: 116 LKILVLRSNRFDG--PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQ 173
L+ L L++N F G P SN + L + LS N +G +P + S+ ++ D +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCS----ELVSLHLSFNYLSGTIPSSL-GSLSKLR--DLK 448
Query: 174 GRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 233
L + G E + K L +DF N GEIP L N +L ++LS+N LTG
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETL-ILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 234 IPVSFENMTALESLDLSFNKLDGRIPEQ 261
IP + L L LS N G IP +
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAE 533
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 101/271 (37%), Gaps = 85/271 (31%)
Query: 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNL 57
N+ + L NNR+ G I + + + +SNN SG IP + L +L L+ N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 58 SGTIPPCL--------GNFSTELITLHLKNNSLE-------------------------- 83
+GTIP + NF +++KN+ ++
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 84 -----------GHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDG 128
GH TF N +++ NM S P +GS+P L IL L N G
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 129 PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESI 188
+ + + L I+DLS N+ G +P+ +M A
Sbjct: 671 SIPDE--VGDLRGLNILDLSSNKLDGRIPQ----AMSA---------------------- 702
Query: 189 TQKILVMFRAMDFSSNRFHGEIPEVLGNFKS 219
L M +D S+N G IPE +G F++
Sbjct: 703 ----LTMLTEIDLSNNNLSGPIPE-MGQFET 728
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 29/193 (15%)
Query: 69 STELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDG 128
S L +L L NSL G + +TS LGS LK L + SN D
Sbjct: 99 SASLTSLDLSRNSLSGPV------------TTLTS------LGSCSGLKFLNVSSNTLDF 140
Query: 129 PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG--GAFYDE 186
P S +L ++DLS N +G ++ D G L+++ G
Sbjct: 141 PGKVSG-GLKLNSLEVLDLSANSISG-------ANVVGWVLSDGCGELKHLAISGNKISG 192
Query: 187 SITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 246
+ V +D SSN F IP LG+ +L+ L++S N L+G+ + T L+
Sbjct: 193 DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 247 LDLSFNKLDGRIP 259
L++S N+ G IP
Sbjct: 252 LNISSNQFVGPIP 264
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 108/277 (38%), Gaps = 54/277 (19%)
Query: 31 NKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTF 90
N L G IPP+I L+ L YL ++ N+SG IP L T L+TL N+L G
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSG------ 139
Query: 91 ANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHN 150
+ P + SLP L + NR G + +S +F + + +S N
Sbjct: 140 --------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-KLFTSMTISRN 184
Query: 151 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEI 210
TG +P A ++ F + TQKI + ++ F +
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----- 239
Query: 211 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXX 270
+G K+L L+L +N + G +P + L SL++SFN
Sbjct: 240 ---VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN------------------ 278
Query: 271 XXXXHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPL 307
L G IPQG F +Y N LCG PL
Sbjct: 279 ------NLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 29 SNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHD 88
S N LSG +PPSI SL L ++ N +SG IP G+FS ++ + N L G I
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 89 TFAN---AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRII 145
TFAN A V++ NM GS + + L N L ++ + L +
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS---KNLNGL 249
Query: 146 DLSHNEFTGFLPRRI 160
DL +N G LP+ +
Sbjct: 250 DLRNNRIYGTLPQGL 264
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 22/84 (26%)
Query: 1 NITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGT 60
N+ LDLRNNRI G+ +P + L FL L++S NNL G
Sbjct: 245 NLNGLDLRNNRIYGT---------------------LPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 61 IPPCLGNFSTELITLHLKNNSLEG 84
IP GN ++ + N L G
Sbjct: 284 IPQG-GNLQRFDVSAYANNKCLCG 306
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 137 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR-LEYMG-GAFYDESITQKILV 194
F F L+++DLS E + + S+ + + G ++ + GAF S QK++
Sbjct: 51 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNK 253
+ + N P +G+ K+LK LN++HN + +P F N+T LE LDLS NK
Sbjct: 110 LETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 162
Query: 254 LDG 256
+
Sbjct: 163 IQS 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 137 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR-LEYMG-GAFYDESITQKILV 194
F F L+++DLS E + + S+ + + G ++ + GAF S QK++
Sbjct: 51 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNK 253
+ + N P +G+ K+LK LN++HN + +P F N+T LE LDLS NK
Sbjct: 110 VETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 162
Query: 254 LDG 256
+
Sbjct: 163 IQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 137 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR-LEYMG-GAFYDESITQKILV 194
F F L+++DLS E + + S+ + + G ++ + GAF S QK++
Sbjct: 50 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNK 253
+ + N P +G+ K+LK LN++HN + +P F N+T LE LDLS NK
Sbjct: 109 VETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 161
Query: 254 LDG 256
+
Sbjct: 162 IQS 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 137 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR-LEYMG-GAFYDESITQKILV 194
F F L+++DLS E + + S+ + + G ++ + GAF S QK++
Sbjct: 50 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNK 253
+ + N P +G+ K+LK LN++HN + +P F N+T LE LDLS NK
Sbjct: 109 VETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 161
Query: 254 LDG 256
+
Sbjct: 162 IQS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 137 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR-LEYMG-GAFYDESITQKILV 194
F F L+++DLS E + + S+ + + G ++ + GAF S QK++
Sbjct: 49 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNK 253
+ + N P +G+ K+LK LN++HN + +P F N+T LE LDLS NK
Sbjct: 108 VETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 254 LDG 256
+
Sbjct: 161 IQS 163
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 75 LHLKNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPL 130
L+L+ NS++ DTF + I+ + N+ LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL---- 95
Query: 131 CNSNITFPFQA------LRIIDLSHNEFTGFLPRRIFPSMEAMKNVD--EQGRLEYMGGA 182
T P QA LR + L +N +P F + +++ +D E RLEY+ A
Sbjct: 96 ----TTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEA 150
Query: 183 FYDESITQKIL----------------VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLS 226
++ + + L V ++ S NR P SL+ L L
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 227 HNSLTGNIPVSFENMTALESLDLSFNKL 254
H + +F+++ +LE L+LS N L
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 75 LHLKNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPL 130
L+L+ NS++ DTF + I+ + N+ LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL---- 95
Query: 131 CNSNITFPFQA------LRIIDLSHNEFTGFLPRRIFPSMEAMKNVD--EQGRLEYMGGA 182
T P QA LR + L +N +P F + +++ +D E RLEY+ A
Sbjct: 96 ----TTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEA 150
Query: 183 FYDESITQKIL----------------VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLS 226
++ + + L V ++ S NR P SL+ L L
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 227 HNSLTGNIPVSFENMTALESLDLSFNKL 254
H + +F+++ +LE L+LS N L
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 210 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXX 269
+P+ L N+K L +++LS+N ++ SF NMT L +L LS+N+L IP +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 270 XXXXXHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRC 311
H +P+G F + S ++ + PL C
Sbjct: 105 RLLSLHGNDISVVPEG----AFNDLSALSHLAIGANPLYCDC 142
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 137 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR-LEYMG-GAFYDESITQKILV 194
F F L+++DLS E + + S+ + + G ++ + GAF S QK++
Sbjct: 49 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNK 253
+ + N P +G+ K+LK LN++HN + +P F N+T LE LDLS NK
Sbjct: 108 VETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 254 LD 255
+
Sbjct: 161 IQ 162
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 25/164 (15%)
Query: 113 LPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI-FPSMEAMKNVD 171
LP L+ L L N C S F +L+ +DLS F G + F +E ++++D
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 402
Query: 172 -EQGRLEYMGG----------AFYDESITQKILVM---------FRAMDFSSNRFHGE-I 210
+ L+ M + D S T + + + N F +
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 211 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
P++ ++L L+LS L P +F ++++L+ L+++ N+L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 137 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR-LEYMG-GAFYDESITQKILV 194
F F L+++DLS E + + S+ + + G ++ + GAF S QK++
Sbjct: 73 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131
Query: 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNK 253
+ + N P +G+ K+LK LN++HN + +P F N+T LE LDLS NK
Sbjct: 132 VETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184
Query: 254 LDG 256
+
Sbjct: 185 IQS 187
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 179 MGGAFYDESITQKILVMFR---AMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 235
M G + E+ I R +D S + P + SL+VLN+SHN+
Sbjct: 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535
Query: 236 VSFENMTALESLDLSFNKL 254
++ + +L+ LD S N +
Sbjct: 536 FPYKCLNSLQVLDYSLNHI 554
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 25/162 (15%)
Query: 113 LPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI-FPSMEAMKNVD 171
LP L+ L L N C S F +L+ +DLS F G + F +E ++++D
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVITMSSNFLGLEQLEHLD 426
Query: 172 -EQGRLEYMGG----------AFYDESITQKILVM---------FRAMDFSSNRFHGE-I 210
+ L+ M + D S T + + + N F +
Sbjct: 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486
Query: 211 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 252
P++ ++L L+LS L P +F ++++L+ L++S N
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 137 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR-LEYMG-GAFYDESITQKILV 194
F F L+++DLS E + + S+ + + G ++ + GAF S QK++
Sbjct: 49 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNK 253
+ + N P +G+ K+LK LN++HN + +P F N+T LE LDLS NK
Sbjct: 108 VETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 254 LDG 256
+
Sbjct: 161 IQS 163
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 179 MGGAFYDESITQKILVMFR---AMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 235
M G + E+ I R +D S + P + SL+VLN+SHN+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
Query: 236 VSFENMTALESLDLSFNKL 254
++ + +L+ LD S N +
Sbjct: 512 FPYKCLNSLQVLDYSLNHI 530
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 25/162 (15%)
Query: 113 LPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI-FPSMEAMKNVD 171
LP L+ L L N C S F +L+ +DLS F G + F +E ++++D
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 402
Query: 172 -EQGRLEYMGG----------AFYDESITQKILVM---------FRAMDFSSNRFHGE-I 210
+ L+ M + D S T + + + N F +
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 211 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 252
P++ ++L L+LS L P +F ++++L+ L++S N
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 156 LPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLG 215
+P + M + +++ + +E M +D+ L +++F SN+ + G
Sbjct: 138 IPANLLTDMRNLSHLELRANIEEMPSHLFDD------LENLESIEFGSNKLRQMPRGIFG 191
Query: 216 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 260
LK LNL+ N L F+ +T+L+ + L N D P
Sbjct: 192 KMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 56/157 (35%), Gaps = 33/157 (21%)
Query: 106 FPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSME 165
P + L +LK LVL N FD S FP L+H G + +
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFP-------SLTHLYIRGNVKKLHLGV-- 340
Query: 166 AMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGE--IPEVLGNFKSLKVL 223
G LE +G + +D S N L N L+ L
Sbjct: 341 --------GCLEKLGN--------------LQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378
Query: 224 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 260
NLSHN G +F+ LE LDL+F +L P+
Sbjct: 379 NLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ 415
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 110 LGSLPVLKILVLRSNRF-DGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMK 168
L LPVL+ L L+ N F DG + +N+ +L ++ LS + ++ F S+ M
Sbjct: 442 LAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLS-IDQQAFHSLGKMS 500
Query: 169 NVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHN 228
+VD + +SI + ++ ++N + P +L +NLSHN
Sbjct: 501 HVD------LSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Query: 229 SL 230
L
Sbjct: 555 PL 556
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 196 FRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 255
R +D SSN H + + ++L+VL L +N + +FE+M L+ L LS N++
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI- 148
Query: 256 GRIP 259
R P
Sbjct: 149 SRFP 152
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 175 RLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI 234
+L+ + +D+ K LV+ N+ V +L LNL+HN L
Sbjct: 96 QLQSLPNGVFDKLTNLKELVLVE------NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 235 PVSFENMTALESLDLSFNKLDGRIPE 260
F+ +T L LDLS+N+L +PE
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQS-LPE 174
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 16/252 (6%)
Query: 70 TELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGP 129
E I +LK S+ + N+I + N + + LP ++ L L N+
Sbjct: 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78
Query: 130 LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKN-VDEQGRLEYMGGAFYDESI 188
+T L + L+ N+ LP +F + +K V + +L+ + +D+
Sbjct: 79 SALKELT----NLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-- 131
Query: 189 TQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 248
L ++ + N+ V +L L+LS+N L F+ +T L+ L
Sbjct: 132 ----LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 249 LSFNKLDGRIPEQXXXXXXXXXXXXXHSRLWGRIPQGNQFNTFANDSYFGNIHLCG---E 305
L N+L +P+ H W G ++ + + + G +
Sbjct: 188 LYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVA 246
Query: 306 PLTMRCSNDGLP 317
P + +CS G P
Sbjct: 247 PDSAKCSGSGKP 258
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 95 VNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTG 154
++ NN+ +D+ G L L+ L+L+ N+ + +T ++L+ +D+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 155 FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVL 214
+ +++ +++ M ++I + + + +D SN+ IP+ +
Sbjct: 389 DEKKGDCSWTKSLLSLN-------MSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQV 440
Query: 215 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 259
++L+ LN++ N L F+ +T+L+ + L N D P
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 168 KNVDEQGRLEYMGGAFYDESITQKILVM--FRAMDFSSNRFHGEIPEVLGNFKSLKVLNL 225
K++ ++ + + + E T IL + R + S NR V + L+ L+L
Sbjct: 17 KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76
Query: 226 SHNSLTGNIPVSFENMTALESLDLSFNKLDG 256
SHN L + +S L+ LDLSFN D
Sbjct: 77 SHNKL---VKISCHPTVNLKHLDLSFNAFDA 104
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 93 AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPF-QALRIIDLSHNE 151
I+N+ N S+ + + SL L+IL++ NR + F F Q L +DLSHN+
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS---VFKFNQELEYLDLSHNK 80
Query: 152 FT 153
Sbjct: 81 LV 82
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 214 LGNFKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFNKL 254
+G +LK LN++HN + + +P F N+T L +DLS+N +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 20/150 (13%)
Query: 126 FDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM---------KNVDEQG-- 174
F+G + S + L+ +D H+ F S+E + +D G
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444
Query: 175 -------RLEYMGGAFYDESITQKIL--VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNL 225
L+ G +F D +++ +D S + V L++LN+
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504
Query: 226 SHNSLTGNIPVSFENMTALESLDLSFNKLD 255
SHN+L + + +L +LD SFN+++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 142 LRIIDLSHNEFTGFLPRR-------IFPSMEAMKNVDEQGRLEYMGG-AFYDESITQ--- 190
L I+ S+N+ T P + I + + ++ L + G ++ IT
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 191 -KILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 249
K L ++ SSN L SL+ LN S N +T P++ N+T LE LD+
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPLA--NLTTLERLDI 180
Query: 250 SFNKL 254
S NK+
Sbjct: 181 SSNKV 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 72 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 113
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 214 LGNFKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFNKL 254
+G +LK LN++HN + + +P F N+T L +DLS+N +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 20/150 (13%)
Query: 126 FDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM---------KNVDEQG-- 174
F+G + S + L+ +D H+ F S+E + +D G
Sbjct: 380 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 439
Query: 175 -------RLEYMGGAFYDESITQKIL--VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNL 225
L+ G +F D +++ +D S + V L++LN+
Sbjct: 440 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 499
Query: 226 SHNSLTGNIPVSFENMTALESLDLSFNKLD 255
SHN+L + + +L +LD SFN+++
Sbjct: 500 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V G L L+LSHN L ++P+ + + AL LD+SFN+L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 179 MGGAFYDESITQKILVMFRAM---DFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 235
M G + E+ I R + D S + P + SL+VLN+SHN+
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 236 VSFENMTALESLDLSFNKL 254
++ + +L+ LD S N +
Sbjct: 217 FPYKCLNSLQVLDYSLNHI 235
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 36 RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIV 95
++PP+ LQ+ S+ D ++G P G ++ L N E + D A+ +
Sbjct: 450 QVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVS 509
Query: 96 NVE 98
N +
Sbjct: 510 NAK 512
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 36 RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIV 95
++PP+ LQ+ S+ D ++G P G ++ L N E + D A+ +
Sbjct: 450 QVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVS 509
Query: 96 NVE 98
N +
Sbjct: 510 NAK 512
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 36 RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIV 95
++PP+ LQ+ S+ D ++G P G ++ L N E + D A+ +
Sbjct: 450 QVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVS 509
Query: 96 NVE 98
N +
Sbjct: 510 NAK 512
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 197 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
R +D S V K LKVLNL++N + +F + L+ L+LS+N L
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+V L+VL L+HN L P F ++TAL L L+ N+L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 89/231 (38%), Gaps = 50/231 (21%)
Query: 41 ICSLSFLQYLSLSDNNLSGTI-PPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99
+ +S LQ L+L + ++GT PP L +L L+L+N S
Sbjct: 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW----------------- 133
Query: 100 NMTSDSFPCWLGSL-----PVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNE--- 151
T D+ WL L P LK+L + C FP AL +DLS N
Sbjct: 134 -ATRDA---WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP--ALSTLDLSDNPELG 187
Query: 152 ----FTGFLPRRIFPSME--AMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNR 205
+ P + FP+++ A++N +E G S V + +D S N
Sbjct: 188 ERGLISALCPLK-FPTLQVLALRNAG----METPSGVC---SALAAARVQLQGLDLSHNS 239
Query: 206 FHGEIPEVLGNFKS-LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 255
++ S L LNLS L +P L LDLS+N+LD
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD 287
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 29/157 (18%)
Query: 104 DSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPS 163
+ P + + LK LVL +N FD LC N F +LR + + N L R
Sbjct: 290 NGLPSGIEGMNSLKKLVLNANSFD-QLCQINAA-SFPSLRDLYIKGNMRKLDLGTRCLEK 347
Query: 164 MEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVL 223
+E ++ +D L + D Q L N + L+ L
Sbjct: 348 LENLQKLD----LSHSDIEASDCCNLQ-----------------------LKNLRHLQYL 380
Query: 224 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 260
NLS+N G +F+ LE LD++F L + P
Sbjct: 381 NLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPH 417
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 23/131 (17%)
Query: 138 PFQ---ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQ---- 190
PFQ LR+++LSH + + ++ +++++ QG + G+ ++ Q
Sbjct: 419 PFQNLHLLRVLNLSHC-LLDTSNQHLLAGLQDLRHLNLQGN-SFQDGSISKTNLLQMVGS 476
Query: 191 -KILVMFRA--MDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL 247
+IL++ + FHG +++ L+LSHNSLTG+ S + ++ L+ L
Sbjct: 477 LEILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNSLTGD---SMDALSHLKGL 525
Query: 248 DLSFNKLDGRI 258
L+ + RI
Sbjct: 526 YLNMASNNIRI 536
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 1 NITTLDLRNNRIQG---SILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNL 57
N+ TL + +N++Q + + + N+L P SL+ L YLSL N L
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 58 SGTIPPCLGNFSTELITLHLKNNSL----EGHIHDTFANAIVNVENNMTSDSFPCWLGSL 113
++P + + T L L L NN L EG + ++NN SL
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Query: 114 PVLKILVLRSNRFDGPLCNSNI 135
LK+L L+ N +D CN I
Sbjct: 205 EKLKMLQLQENPWDCT-CNGII 225
>pdb|2FTP|A Chain A, Crystal Structure Of Hydroxymethylglutaryl-Coa Lyase From
Pseudomonas Aeruginosa
Length = 302
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 71 ELITLHLKNNSLEGHIHDTFANAIVNV-----ENNMTSDSFPCWLGSLPVLK 117
E + + L GH HDT+ A+ N+ E DS LG P K
Sbjct: 195 EAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAK 246
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 60/165 (36%), Gaps = 44/165 (26%)
Query: 106 FPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSME 165
P L L LK LVL +N+F+ LC + FPS+
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFEN-LCQ-----------------------ISASNFPSLT 328
Query: 166 AMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEV------LGNFKS 219
+ RLE G + L R +D S H +I L N
Sbjct: 329 HLSIKGNTKRLELGTGCLEN-------LENLRELDLS----HDDIETSDCCNLQLRNLSH 377
Query: 220 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL---DGRIPEQ 261
L+ LNLS+N +F+ LE LDL+F +L D + P Q
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 217 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 252
LK LNL N ++ +P SFE++ +L SL+L+ N
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 213 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+ G L L L N LTG P +FE + ++ L L NK+
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 142 LRIIDLSHNEFTGFLPRR-------IFPSMEAMKNVDEQGRLEYMGG-AFYDESITQ--- 190
L I+ S+N+ T P + I + + ++ L + G ++ IT
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 191 -KILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 249
K L ++ SSN L SL+ L+ S N +T P++ N+T LE LD+
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDI 180
Query: 250 SFNKL 254
S NK+
Sbjct: 181 SSNKV 185
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 142 LRIIDLSHNEFTGFLPRR-------IFPSMEAMKNVDEQGRLEYMGG-AFYDESITQ--- 190
L I+ S+N+ T P + I + + ++ L + G ++ IT
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 191 -KILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 249
K L ++ SSN L SL+ L+ S N +T P++ N+T LE LD+
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDI 180
Query: 250 SFNKL 254
S NK+
Sbjct: 181 SSNKV 185
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 196 FRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 255
R + S NR V + L+ L++SHN L +S M +L LDLSFN D
Sbjct: 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFD 134
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 8/165 (4%)
Query: 95 VNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTG 154
+N N+ +DS +L L+ L+L+ N + +T +L +D+S N
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 155 FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVL 214
R E++ ++ + G F + K+ + +D +NR IP+ +
Sbjct: 418 HAYDRTCAWAESILVLNLSSNM-LTGSVF--RCLPPKV----KVLDLHNNRIMS-IPKDV 469
Query: 215 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 259
+ ++L+ LN++ N L F+ +T+L+ + L N D P
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 220 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 260
+ VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 26/116 (22%)
Query: 139 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRA 198
+ L I+DL HN R++ K+ + G + ++ G L
Sbjct: 508 LEKLEILDLQHNNLA-----RLW------KHANPGGPIYFLKG-----------LSHLHI 545
Query: 199 MDFSSNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFN 252
++ SN F EIP EV + LK+++L N+L +P S F N +L+SL+L N
Sbjct: 546 LNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKN 599
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 220 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 260
+ VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 26/116 (22%)
Query: 139 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRA 198
+ L I+DL HN R++ K+ + G + ++ G L
Sbjct: 513 LEKLEILDLQHNNLA-----RLW------KHANPGGPIYFLKG-----------LSHLHI 550
Query: 199 MDFSSNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFN 252
++ SN F EIP EV + LK+++L N+L +P S F N +L+SL+L N
Sbjct: 551 LNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKN 604
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 220 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 260
+ VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 26/116 (22%)
Query: 139 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRA 198
+ L I+DL HN R++ K+ + G + ++ G L
Sbjct: 503 LEKLEILDLQHNNLA-----RLW------KHANPGGPIYFLKG-----------LSHLHI 540
Query: 199 MDFSSNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFN 252
++ SN F EIP EV + LK+++L N+L +P S F N +L+SL+L N
Sbjct: 541 LNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKN 594
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 220 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 260
+ VLNL+HN L P +F + L LD FN + PE
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 145 IDLSHNEFTGFLPRRIFPSMEAMKNVD--EQGRLEYMGGAFYDESITQKILVMFRAMDFS 202
+ L++NEFT IF + ++ ++ + GAF S +IL+ +
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL-------T 89
Query: 203 SNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 259
SNR ++ +SLK L L N +T SF ++++ L L N++ P
Sbjct: 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 218 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 253
++L +L L N+L G +F +T LE LDLS N
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 17 LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIP-PCLGNFSTELITL 75
LV P E + NNK++ + L+ L LSL DN +S +P CL T+L L
Sbjct: 125 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLACL----TKLQNL 178
Query: 76 HLKNNSLEGHIHDTFA 91
+L N HI D A
Sbjct: 179 YLSKN----HISDLRA 190
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 163 SMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKV 222
S +A + D G + G+ SI + +++D S+NR L +L+
Sbjct: 23 SNQASLSCDRNGICKGSSGSL--NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQA 80
Query: 223 LNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
L L+ N + SF ++ +LE LDLS+N L
Sbjct: 81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 35/152 (23%)
Query: 138 PFQ--ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGGAFYDESITQKILV 194
PF+ ++ +DLS N F + +R F ++ K Y MG +F +
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 195 MFRAM--------DFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLT--------------- 231
F+ + D S ++ + V +F L+ L L+ N +
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 232 --------GNIPVS-FENMTALESLDLSFNKL 254
G+I FEN+ LE LDLS+N +
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
>pdb|3NDQ|A Chain A, Structure Of Human Tfiis Domain Ii
Length = 108
Score = 28.1 bits (61), Expect = 6.5, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 181 GAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS-FE 239
G+ +E+I Q+I R D ++ + + N K K NL N L GNIP F
Sbjct: 45 GSQIEEAIYQEI----RNTDM---KYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFA 97
Query: 240 NMTALE 245
MTA E
Sbjct: 98 RMTAEE 103
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 209 EIPEVLGNFKSLKVLNLSHNSLT 231
E+P + N +L+VL+LSHN LT
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT 283
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 211 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
P +K L+ ++LS+N ++ P +F+ + +L SL L NK+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 211 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
P +K L+ ++LS+N ++ P +F+ + +L SL L NK+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 197 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
+++D S+NR L +L+ L L+ N + SF ++ +LE LDLS+N L
Sbjct: 29 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 197 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254
R +D NR + +F L+ L L+ N ++ P +F N+ L +L L N+L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,120,271
Number of Sequences: 62578
Number of extensions: 409987
Number of successful extensions: 1179
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 259
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)