Query 042366
Match_columns 343
No_of_seqs 220 out of 3147
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-31 3.2E-36 272.0 20.1 302 1-306 285-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-31 3.3E-36 271.9 18.4 302 1-311 261-587 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.7E-32 5.8E-37 244.0 0.4 308 2-319 127-463 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.9E-32 1.5E-36 241.4 3.0 275 20-307 124-404 (873)
5 KOG4237 Extracellular matrix p 99.9 1.6E-26 3.4E-31 198.4 0.6 313 6-333 52-385 (498)
6 KOG0444 Cytoskeletal regulator 99.9 2.5E-25 5.5E-30 201.3 -1.7 290 1-304 56-377 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 5.1E-24 1.1E-28 192.9 -1.9 267 1-284 104-380 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 2.7E-24 5.8E-29 185.2 -9.5 241 2-283 47-292 (565)
9 PRK15387 E3 ubiquitin-protein 99.8 8.5E-20 1.8E-24 175.8 16.4 246 3-284 204-463 (788)
10 KOG0472 Leucine-rich repeat pr 99.8 9.2E-23 2E-27 175.8 -4.8 293 2-308 185-541 (565)
11 PRK15370 E3 ubiquitin-protein 99.8 6E-20 1.3E-24 177.6 12.0 243 2-279 180-428 (754)
12 KOG4237 Extracellular matrix p 99.8 6.1E-22 1.3E-26 170.4 -5.7 271 2-280 69-360 (498)
13 KOG0618 Serine/threonine phosp 99.8 5.7E-21 1.2E-25 179.9 -0.4 182 93-280 244-466 (1081)
14 PRK15370 E3 ubiquitin-protein 99.8 5.8E-19 1.3E-23 170.8 10.8 224 1-256 200-429 (754)
15 KOG0618 Serine/threonine phosp 99.8 6.5E-21 1.4E-25 179.6 -3.1 263 1-278 220-488 (1081)
16 PRK15387 E3 ubiquitin-protein 99.8 2.4E-18 5.3E-23 165.8 12.5 225 1-264 223-467 (788)
17 PLN03210 Resistant to P. syrin 99.8 2.6E-17 5.7E-22 169.0 20.6 247 20-279 588-883 (1153)
18 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-19 6E-24 159.8 -2.2 284 4-307 2-319 (319)
19 PLN03210 Resistant to P. syrin 99.7 3.3E-16 7.2E-21 161.0 19.4 252 13-283 550-842 (1153)
20 KOG0617 Ras suppressor protein 99.7 2.9E-19 6.3E-24 137.5 -4.0 183 42-283 30-216 (264)
21 KOG0617 Ras suppressor protein 99.7 3.9E-19 8.5E-24 136.8 -5.3 177 20-255 32-212 (264)
22 cd00116 LRR_RI Leucine-rich re 99.7 9.6E-18 2.1E-22 149.9 -0.9 260 2-278 25-319 (319)
23 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.4E-18 125.0 -1.4 194 20-276 74-270 (722)
24 COG4886 Leucine-rich repeat (L 99.3 4.4E-12 9.5E-17 116.8 6.0 194 25-279 97-290 (394)
25 KOG1909 Ran GTPase-activating 99.3 1.3E-13 2.9E-18 117.7 -3.9 244 2-278 32-310 (382)
26 PLN03150 hypothetical protein; 99.2 1.9E-11 4.2E-16 118.0 8.8 117 195-311 419-537 (623)
27 PF14580 LRR_9: Leucine-rich r 99.2 2.9E-12 6.4E-17 102.4 2.4 107 20-153 18-126 (175)
28 KOG0532 Leucine-rich repeat (L 99.2 2.9E-13 6.3E-18 122.4 -5.3 188 3-252 78-270 (722)
29 KOG3207 Beta-tubulin folding c 99.2 4.2E-12 9.2E-17 111.5 1.1 162 112-280 170-340 (505)
30 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 4.9E-16 112.0 5.9 196 4-260 97-295 (394)
31 KOG3207 Beta-tubulin folding c 99.1 4.2E-12 9.1E-17 111.6 -2.5 166 109-278 141-313 (505)
32 PF13855 LRR_8: Leucine rich r 99.1 8.4E-11 1.8E-15 77.6 3.2 61 218-278 1-61 (61)
33 KOG1859 Leucine-rich repeat pr 99.1 5.3E-12 1.2E-16 117.4 -3.7 188 113-315 83-296 (1096)
34 KOG1259 Nischarin, modulator o 99.0 3.3E-11 7.2E-16 101.4 0.2 218 20-280 181-413 (490)
35 PLN03150 hypothetical protein; 99.0 4.7E-10 1E-14 108.5 7.8 91 193-283 441-532 (623)
36 KOG1909 Ran GTPase-activating 99.0 6.2E-12 1.3E-16 107.6 -4.6 115 193-308 184-311 (382)
37 PF13855 LRR_8: Leucine rich r 99.0 1.8E-10 3.8E-15 76.0 3.0 61 194-254 1-61 (61)
38 PF14580 LRR_9: Leucine-rich r 99.0 2.2E-10 4.7E-15 91.7 4.0 107 193-308 18-126 (175)
39 KOG1259 Nischarin, modulator o 99.0 8.5E-11 1.8E-15 98.9 0.8 178 20-257 213-414 (490)
40 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.8E-14 107.2 7.7 108 20-151 544-653 (889)
41 KOG0531 Protein phosphatase 1, 98.9 2E-10 4.3E-15 106.2 0.3 57 196-255 234-290 (414)
42 KOG0531 Protein phosphatase 1, 98.8 4.2E-10 9.1E-15 104.0 -0.6 210 4-278 76-289 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.8 1.1E-08 2.3E-13 101.7 6.2 102 2-125 547-653 (889)
44 COG5238 RNA1 Ran GTPase-activa 98.5 2.5E-09 5.3E-14 89.0 -5.0 247 2-280 32-317 (388)
45 KOG2120 SCF ubiquitin ligase, 98.5 1.6E-09 3.4E-14 91.3 -6.2 41 113-153 233-273 (419)
46 KOG2982 Uncharacterized conser 98.5 8.1E-08 1.8E-12 81.1 2.7 64 193-256 198-263 (418)
47 COG5238 RNA1 Ran GTPase-activa 98.4 3.3E-08 7.1E-13 82.4 -2.3 225 43-282 28-288 (388)
48 KOG1644 U2-associated snRNP A' 98.3 1.2E-06 2.5E-11 70.2 5.4 109 20-150 41-150 (233)
49 KOG2120 SCF ubiquitin ligase, 98.3 6.1E-09 1.3E-13 87.8 -7.9 84 2-85 187-275 (419)
50 KOG1859 Leucine-rich repeat pr 98.2 3.8E-08 8.2E-13 92.3 -5.6 126 21-176 164-290 (1096)
51 KOG4579 Leucine-rich repeat (L 98.2 1.3E-07 2.8E-12 70.9 -1.9 118 193-319 52-170 (177)
52 PF12799 LRR_4: Leucine Rich r 98.1 1.7E-06 3.7E-11 52.3 2.5 37 21-58 1-37 (44)
53 KOG2982 Uncharacterized conser 98.1 2.6E-07 5.6E-12 78.2 -1.7 206 20-255 70-290 (418)
54 KOG4579 Leucine-rich repeat (L 98.1 9.5E-08 2.1E-12 71.6 -4.2 138 114-284 27-164 (177)
55 PRK15386 type III secretion pr 98.1 1.9E-05 4.1E-10 71.3 8.7 53 20-80 51-104 (426)
56 PRK15386 type III secretion pr 98.1 2.4E-05 5.2E-10 70.6 9.1 138 41-228 48-187 (426)
57 PF12799 LRR_4: Leucine Rich r 98.0 6.1E-06 1.3E-10 49.9 3.1 36 243-279 2-37 (44)
58 KOG1644 U2-associated snRNP A' 97.9 2.2E-05 4.7E-10 63.1 5.8 39 113-153 63-101 (233)
59 KOG4341 F-box protein containi 97.8 5E-07 1.1E-11 79.8 -5.6 273 2-278 140-438 (483)
60 KOG3665 ZYG-1-like serine/thre 97.8 4.8E-06 1E-10 81.0 -0.4 137 1-161 123-271 (699)
61 KOG2123 Uncharacterized conser 97.5 3.2E-06 7E-11 71.0 -4.3 101 2-121 21-124 (388)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00043 9.4E-09 52.7 7.4 124 14-167 5-128 (129)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00049 1.1E-08 52.5 6.0 123 108-268 6-128 (129)
64 KOG3665 ZYG-1-like serine/thre 97.4 4.4E-05 9.6E-10 74.4 0.0 84 193-278 172-262 (699)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.1E-09 60.1 2.2 61 193-255 64-129 (260)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00033 7.2E-09 58.6 2.2 41 215-255 62-104 (260)
67 KOG2123 Uncharacterized conser 97.1 4.8E-05 1E-09 64.2 -2.8 87 193-283 18-105 (388)
68 KOG4308 LRR-containing protein 95.7 5.2E-05 1.1E-09 70.8 -11.4 191 72-279 89-303 (478)
69 PF00560 LRR_1: Leucine Rich R 95.6 0.0043 9.2E-08 31.2 0.6 17 47-64 2-18 (22)
70 PF00560 LRR_1: Leucine Rich R 95.5 0.0052 1.1E-07 30.8 0.6 21 22-43 1-21 (22)
71 KOG4308 LRR-containing protein 95.3 3.7E-05 8.1E-10 71.7 -13.7 115 23-153 89-217 (478)
72 KOG4341 F-box protein containi 95.2 0.00092 2E-08 59.7 -4.5 267 1-272 165-458 (483)
73 smart00369 LRR_TYP Leucine-ric 94.8 0.023 4.9E-07 29.7 1.8 22 45-67 2-23 (26)
74 smart00370 LRR Leucine-rich re 94.8 0.023 4.9E-07 29.7 1.8 22 45-67 2-23 (26)
75 PF13504 LRR_7: Leucine rich r 94.5 0.017 3.8E-07 26.8 0.8 11 47-57 3-13 (17)
76 KOG1947 Leucine rich repeat pr 94.4 0.006 1.3E-07 57.5 -1.9 113 20-152 187-307 (482)
77 TIGR00864 PCC polycystin catio 93.3 0.041 8.9E-07 60.5 1.7 20 300-319 24-43 (2740)
78 KOG0473 Leucine-rich repeat pr 92.7 0.0024 5.2E-08 52.8 -6.4 84 193-279 41-124 (326)
79 KOG3864 Uncharacterized conser 92.6 0.016 3.4E-07 47.0 -1.9 81 195-275 102-185 (221)
80 smart00370 LRR Leucine-rich re 92.4 0.11 2.4E-06 27.0 1.9 13 243-255 3-15 (26)
81 smart00369 LRR_TYP Leucine-ric 92.4 0.11 2.4E-06 27.0 1.9 13 243-255 3-15 (26)
82 KOG0473 Leucine-rich repeat pr 92.0 0.0036 7.9E-08 51.7 -6.2 79 2-83 44-124 (326)
83 PF13516 LRR_6: Leucine Rich r 90.4 0.079 1.7E-06 27.0 -0.1 15 242-256 2-16 (24)
84 KOG4242 Predicted myosin-I-bin 89.7 1.2 2.6E-05 41.1 6.8 114 141-255 355-481 (553)
85 KOG3864 Uncharacterized conser 87.0 0.028 6.2E-07 45.6 -4.6 77 95-171 106-182 (221)
86 KOG1947 Leucine rich repeat pr 86.8 0.28 6E-06 46.3 1.0 133 139-272 187-327 (482)
87 smart00082 LRRCT Leucine rich 83.0 0.37 7.9E-06 29.7 -0.0 14 305-318 1-14 (51)
88 smart00364 LRR_BAC Leucine-ric 79.0 1.2 2.7E-05 23.2 1.1 17 46-63 3-19 (26)
89 smart00365 LRR_SD22 Leucine-ri 78.8 1.8 4E-05 22.5 1.7 14 242-255 2-15 (26)
90 smart00368 LRR_RI Leucine rich 78.0 0.88 1.9E-05 24.2 0.4 14 71-84 3-16 (28)
91 KOG4242 Predicted myosin-I-bin 76.4 12 0.00025 35.0 7.1 85 194-278 354-452 (553)
92 KOG3763 mRNA export factor TAP 70.3 1.4 3.1E-05 41.4 0.1 62 19-83 216-283 (585)
93 KOG3763 mRNA export factor TAP 62.4 4.2 9E-05 38.5 1.4 62 193-256 217-284 (585)
94 smart00367 LRR_CC Leucine-rich 41.1 21 0.00045 18.2 1.4 11 242-252 2-12 (26)
95 TIGR00864 PCC polycystin catio 40.3 14 0.00031 42.0 1.4 30 28-57 2-31 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.5e-31 Score=271.97 Aligned_cols=302 Identities=31% Similarity=0.497 Sum_probs=239.7
Q ss_pred CccEEEccCCcccccCCC---CCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSILV---PPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+|++|++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++.+|..+..+. +|+.|++
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~L 363 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDL 363 (968)
T ss_pred CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEEC
Confidence 478899999999876654 488999999999999988888999999999999999999888888887775 8999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
++|.+++..+..+.. +.+++++|.+.+..|..+..+++|+.|++++|.+.+..+..+ ..++.|+.|++++|.+.
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQ 441 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCccc
Confidence 999998877776665 678888888888888777778888888888888776665554 55667777777777776
Q ss_pred ccCCcccccCccccccccccCccccc--CC--------------cccCcch--hHHHHhccCeeeccCCcccccCccccc
Q 042366 154 GFLPRRIFPSMEAMKNVDEQGRLEYM--GG--------------AFYDESI--TQKILVMFRAMDFSSNRFHGEIPEVLG 215 (343)
Q Consensus 154 ~~~~~~~~~~l~~L~~l~~~~~~~~~--~~--------------~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 215 (343)
+.++.. +..+++|+.+++++|.... .. ....... ....++.|++|++++|.+.+..|..+.
T Consensus 442 ~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 520 (968)
T PLN00113 442 GRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520 (968)
T ss_pred CccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHc
Confidence 554433 3345566666555543210 00 0000011 123377899999999999988999999
Q ss_pred CCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCccc
Q 042366 216 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDS 295 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 295 (343)
.+++|++|+|++|.+.+.+|..|..+++|+.|+|++|++++.+|..+..+++|+.+++++|++.+.+|....+..+....
T Consensus 521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~ 600 (968)
T PLN00113 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA 600 (968)
T ss_pred CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred ccCCCCCCCCC
Q 042366 296 YFGNIHLCGEP 306 (343)
Q Consensus 296 ~~~~~~l~~np 306 (343)
+.+++.+||.+
T Consensus 601 ~~~n~~lc~~~ 611 (968)
T PLN00113 601 VAGNIDLCGGD 611 (968)
T ss_pred hcCCccccCCc
Confidence 88888888754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.5e-31 Score=271.92 Aligned_cols=302 Identities=29% Similarity=0.407 Sum_probs=251.8
Q ss_pred CccEEEccCCcccccCCCC---CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSILVP---PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+|+.|++++|.+.+..+.. +++|++|++++|++.+..|..+.++++|++|++++|.+++.+|..+..+. +|+.|++
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L 339 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQL 339 (968)
T ss_pred CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC-CCCEEEC
Confidence 5889999999998766544 89999999999999999999999999999999999999988888888775 8999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
++|.+++..+..+.. +.+++++|.+.+..|..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.++
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFS 417 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEee
Confidence 999999888877665 889999999999999999999999999999999998777766 67899999999999999
Q ss_pred ccCCcccccCccccccccccCcccccCCc--cc---------------CcchhH-HHHhccCeeeccCCcccccCccccc
Q 042366 154 GFLPRRIFPSMEAMKNVDEQGRLEYMGGA--FY---------------DESITQ-KILVMFRAMDFSSNRFHGEIPEVLG 215 (343)
Q Consensus 154 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~--~~---------------~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~ 215 (343)
+..|.. +..++.|+.++++++....... +. ....+. ...++|++|++++|.+.+..|..+.
T Consensus 418 ~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 418 GELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred eECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhh
Confidence 877755 7789999999998874321110 00 000010 1135788999999999888899999
Q ss_pred CCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCccc
Q 042366 216 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDS 295 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 295 (343)
.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|++++.+|.. +..+.
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-----l~~l~ 571 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN-----LGNVE 571 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh-----HhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999888863 22233
Q ss_pred ccCCCCCCCCCCCCCC
Q 042366 296 YFGNIHLCGEPLTMRC 311 (343)
Q Consensus 296 ~~~~~~l~~np~~~~C 311 (343)
.+..+.+.+|++.+.+
T Consensus 572 ~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 572 SLVQVNISHNHLHGSL 587 (968)
T ss_pred ccCEEeccCCcceeeC
Confidence 3444455555555433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-32 Score=243.99 Aligned_cols=308 Identities=19% Similarity=0.222 Sum_probs=162.6
Q ss_pred ccEEEccCCcccc---cCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcc
Q 042366 2 ITTLDLRNNRIQG---SILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK 78 (343)
Q Consensus 2 L~~L~ls~n~l~~---~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~ 78 (343)
|+.|+|.+|.|+. +-.+.++.|++|||+.|.|+.+.-..|.+-.++++|+|++|.|+ .+...-|....+|.+|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecc
Confidence 4555555555542 22233455555555555555444444554455555555555555 3333322222245555555
Q ss_pred cCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccc
Q 042366 79 NNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTG 154 (343)
Q Consensus 79 ~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 154 (343)
+|+++.....+|.+ +.|+|..|+|.....-.|.++++|+.|.+.+|.+.......| ..+.++++|+|+.|++.
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~- 282 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQ- 282 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhh-
Confidence 55555555444443 445555555444334444455555555555554443222222 34445555555555444
Q ss_pred cCCcccccCccccccccccCcccc-cCCcccCc------------------chhHHHHhccCeeeccCCcccccCccccc
Q 042366 155 FLPRRIFPSMEAMKNVDEQGRLEY-MGGAFYDE------------------SITQKILVMFRAMDFSSNRFHGEIPEVLG 215 (343)
Q Consensus 155 ~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~------------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 215 (343)
.+..+..-+++.|+.|+++.|... +.-..|.. ......+..|++|.|+.|.+.......|.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 333333444444444444444221 11111100 00011145555555666655544445566
Q ss_pred CCCCCCEEEccCCcCccCC---CccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCC
Q 042366 216 NFKSLKVLNLSHNSLTGNI---PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFA 292 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~ 292 (343)
.+++|++|||++|.+...+ ...|.++++|+.|++.+|+|..+...+|.++.+|+.|||.+|.|...-|+ +|.
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n-----AFe 437 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN-----AFE 437 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc-----ccc
Confidence 6677777777777665433 23466778888888888888777777888888888888888888554333 444
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCC
Q 042366 293 NDSYFGNIHLCGEPLTMRCSNDGLPKA 319 (343)
Q Consensus 293 ~~~~~~~~~l~~np~~~~C~~~~~~~~ 319 (343)
.+ -+..+.+..-.+-|||...|++.+
T Consensus 438 ~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 438 PM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred cc-hhhhhhhcccceEEeccHHHHHHH
Confidence 44 334455656667799999998654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=6.9e-32 Score=241.40 Aligned_cols=275 Identities=22% Similarity=0.244 Sum_probs=192.9
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccc----cEE
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFAN----AIV 95 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----~~l 95 (343)
..+++.|+|.+|.|+.+-.+.+..++.|+.||||.|.|+ ++|..-+.-..++++|++++|.|+....+.|.. ..+
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 344555566666655555555666666666666666666 666555544446777777777777666666655 567
Q ss_pred EeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCc
Q 042366 96 NVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR 175 (343)
Q Consensus 96 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~ 175 (343)
.|+.|.++...+..|+.+++|+.|++.+|++.-. ....+.++++|+.|.+..|.+. .+.++.|-.+..++.|++..|
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv--e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV--EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeee--hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccc
Confidence 7777777777677777777777777777776532 2333366777777777777776 566677777777777777765
Q ss_pred ccc-c-CCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCc
Q 042366 176 LEY-M-GGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 253 (343)
Q Consensus 176 ~~~-~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (343)
... . .+.++. ++.|+.|+||+|.|..+.++..+.+++|++|+|++|+|+...++.|..+..|++|.|++|.
T Consensus 280 ~l~~vn~g~lfg-------Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 280 RLQAVNEGWLFG-------LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred hhhhhhcccccc-------cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 322 1 222222 7788899999999988888888888999999999999987777888888888899999988
Q ss_pred CccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCC
Q 042366 254 LDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPL 307 (343)
Q Consensus 254 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~ 307 (343)
|......+|.++.+|+.|||++|.|+..+.+.. ..|..+..+..+.+.||-+
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa--~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA--VAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch--hhhccchhhhheeecCcee
Confidence 887777778888888888888888887777642 2344455555666666644
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-26 Score=198.45 Aligned_cols=313 Identities=21% Similarity=0.209 Sum_probs=205.9
Q ss_pred EccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc-Ccccc
Q 042366 6 DLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN-NSLEG 84 (343)
Q Consensus 6 ~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~-n~l~~ 84 (343)
+.++-+++...-.-.+....++|..|.|+.+.+.+|+.+++|++||||+|.|+..-|+++..+ .+|..|-+.+ |+|+.
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL-ASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh-HhhhHHHhhcCCchhh
Confidence 334444443333337788889999999998888999999999999999999984445444444 4666655544 88887
Q ss_pred cccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCccc
Q 042366 85 HIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 160 (343)
Q Consensus 85 ~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 160 (343)
+..++|.. +.|.+.-|.+.....+.|..+++|..|.+-+|.+.......+ ..+..++++.+..|.+.....
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf--~~l~~i~tlhlA~np~icdCn--- 205 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF--QGLAAIKTLHLAQNPFICDCN--- 205 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc--cchhccchHhhhcCccccccc---
Confidence 77777766 556666666666666777777777777777776654333233 556666777666665321110
Q ss_pred ccCccccccccccCcccccCCc--------------ccCcchhHHHHhccCeeeccCCcccccCc-ccccCCCCCCEEEc
Q 042366 161 FPSMEAMKNVDEQGRLEYMGGA--------------FYDESITQKILVMFRAMDFSSNRFHGEIP-EVLGNFKSLKVLNL 225 (343)
Q Consensus 161 ~~~l~~L~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L 225 (343)
++.+...... +....++. .............+..-..+.+....+.| ..|..+++|++|+|
T Consensus 206 ---L~wla~~~a~-~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 206 ---LPWLADDLAM-NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred ---cchhhhHHhh-chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 0000000000 00000000 00000000111222211222333333444 46889999999999
Q ss_pred cCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCC
Q 042366 226 SHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGE 305 (343)
Q Consensus 226 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~n 305 (343)
++|+++.+-+.+|.+...+++|.|..|+|..+...+|.++..|+.|+|.+|+|+...|- .|.....++.+.+-+|
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-----aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-----AFQTLFSLSTLNLLSN 356 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-----cccccceeeeeehccC
Confidence 99999999999999999999999999999988888999999999999999999887665 5777778888999999
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCccCCC
Q 042366 306 PLTMRCSNDGLPKAP-PSASTDHEEDETP 333 (343)
Q Consensus 306 p~~~~C~~~~~~~~~-~~~~~~~~~~~~~ 333 (343)
||.|+|..-|+-.+. ...+++..++..|
T Consensus 357 p~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 357 PFNCNCRLAWLGEWLRKKSVVGNPRCQSP 385 (498)
T ss_pred cccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence 999999999885432 2224555555433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.5e-25 Score=201.27 Aligned_cols=290 Identities=24% Similarity=0.336 Sum_probs=213.6
Q ss_pred CccEEEccCCcccc--cCCCCCCCCcEEEccCCcccc-cCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQG--SILVPPPSTEVFLVSNNKLSG-RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~--~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+|++|.+++|++.. .-...++.|+.+++..|++.. -+|..+.++..|..||||+|+++ ++|..+..-. ++-.|++
T Consensus 56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AK-n~iVLNL 133 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAK-NSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhc-CcEEEEc
Confidence 47888999999874 224458999999999998873 36777888999999999999999 9999988876 8999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCC-------------------
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSN------------------- 134 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------- 134 (343)
|+|+|..+....|.+ ..|||++|.+. .+|.....+..|++|.+++|++........
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence 999998766555555 68999999887 455566778889999999998754222222
Q ss_pred ----CccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccC
Q 042366 135 ----ITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEI 210 (343)
Q Consensus 135 ----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 210 (343)
....+.+|+.+|++.|.+. .+|.. .-.+.+|+.|++++|.... ..+....+.+|++|++|.|.++ .+
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPec-ly~l~~LrrLNLS~N~ite------L~~~~~~W~~lEtLNlSrNQLt-~L 283 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLP-IVPEC-LYKLRNLRRLNLSGNKITE------LNMTEGEWENLETLNLSRNQLT-VL 283 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCC-cchHH-HhhhhhhheeccCcCceee------eeccHHHHhhhhhhccccchhc-cc
Confidence 1133555666666666665 44543 4456667777777664321 1112234788899999999998 88
Q ss_pred cccccCCCCCCEEEccCCcCcc-CCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCcc-
Q 042366 211 PEVLGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQF- 288 (343)
Q Consensus 211 ~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~- 288 (343)
|+.+.++++|+.|.+.+|++.. -+|..++.+.+|+.+...+|.+. .+|++++.|.+|+.|.|++|++ -..|+..++
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL 361 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLL 361 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce-eechhhhhhc
Confidence 9999999999999999998753 46777888888999999999887 7888999999999999999988 445665433
Q ss_pred CCCCcccccCCCCCCC
Q 042366 289 NTFANDSYFGNIHLCG 304 (343)
Q Consensus 289 ~~~~~~~~~~~~~l~~ 304 (343)
..+..+....|+.+--
T Consensus 362 ~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNLVM 377 (1255)
T ss_pred CCcceeeccCCcCccC
Confidence 3344445555554443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=5.1e-24 Score=192.87 Aligned_cols=267 Identities=24% Similarity=0.325 Sum_probs=214.9
Q ss_pred CccEEEccCCcccccCCCC---CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSILVP---PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
.|+.||||+|++.. +|.. .+++-+|+|++|+|..+....|.++..|-.||||+|.+. .+|..+.++. +|++|++
T Consensus 104 dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~-~LqtL~L 180 (1255)
T KOG0444|consen 104 DLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS-MLQTLKL 180 (1255)
T ss_pred cceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh-hhhhhhc
Confidence 37889999999874 3333 788899999999999776677888899999999999998 8999998887 8999999
Q ss_pred ccCccccc----ccccccccEEEeccCCC-CCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcc
Q 042366 78 KNNSLEGH----IHDTFANAIVNVENNMT-SDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEF 152 (343)
Q Consensus 78 ~~n~l~~~----~~~~~~~~~l~l~~n~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 152 (343)
++|.+.-. .|..-..+.|.+++.+- ..-+|.++..+.||..++++.|.+.. .|.+. ..+++|+.|+|++|.+
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecl--y~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECL--YKLRNLRRLNLSGNKI 257 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHH--hhhhhhheeccCcCce
Confidence 99987632 23332336777777654 35678888899999999999999874 46666 6789999999999999
Q ss_pred cccCCcccccCccccccccccCcccc-cCCcccCcchhHHHHhccCeeeccCCcccc-cCcccccCCCCCCEEEccCCcC
Q 042366 153 TGFLPRRIFPSMEAMKNVDEQGRLEY-MGGAFYDESITQKILVMFRAMDFSSNRFHG-EIPEVLGNFKSLKVLNLSHNSL 230 (343)
Q Consensus 153 ~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l 230 (343)
+. +.-. ...+.+|++|+++.|... ...+. ..+++|+.|++.+|.++- -+|..+.++..|+.+..++|.+
T Consensus 258 te-L~~~-~~~W~~lEtLNlSrNQLt~LP~av-------cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 258 TE-LNMT-EGEWENLETLNLSRNQLTVLPDAV-------CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred ee-eecc-HHHHhhhhhhccccchhccchHHH-------hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 83 3222 456789999999987432 22221 337899999999999872 4688999999999999999999
Q ss_pred ccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCC
Q 042366 231 TGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQ 284 (343)
Q Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 284 (343)
. ..|+.+..+.+|+.|.|+.|++. .+|+++.-++.|+.||++.|.-....|.
T Consensus 329 E-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 329 E-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred c-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 9 89999999999999999999998 5899999999999999999975455453
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=2.7e-24 Score=185.23 Aligned_cols=241 Identities=24% Similarity=0.307 Sum_probs=149.5
Q ss_pred ccEEEccCCcccccC--CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 2 ITTLDLRNNRIQGSI--LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 2 L~~L~ls~n~l~~~~--~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
++.+.+++|.+.... ...+..+.++++.+|++. ..|.+++.+..++.|+.++|+++ .+|..+.... +|+.|++++
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~-~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI-SLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhh-hhhhhhccc
Confidence 455677777766433 334777788888888877 56677777888888888888887 7888887776 788888888
Q ss_pred Ccccccccccccc---cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccC
Q 042366 80 NSLEGHIHDTFAN---AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFL 156 (343)
Q Consensus 80 n~l~~~~~~~~~~---~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 156 (343)
|.+....++.+.. ..++..+|+++. .|..+..+.+|..+++.+|.+....+... .|..|++||.-.|.++ .+
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i---~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHI---AMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cceeecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHH---HHHHHHhcccchhhhh-cC
Confidence 8877443332222 344444444442 23333334445555555555443222221 2444555555555444 34
Q ss_pred CcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCc
Q 042366 157 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV 236 (343)
Q Consensus 157 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 236 (343)
|.+ .+. +.+|.-|||..|++. ..| .|.+|..|++++++.|.|.-...+
T Consensus 199 P~~-lg~-----------------------------l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae 246 (565)
T KOG0472|consen 199 PPE-LGG-----------------------------LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAE 246 (565)
T ss_pred Chh-hcc-----------------------------hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHH
Confidence 433 222 566667777777776 556 577777777777777777733333
Q ss_pred cccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCC
Q 042366 237 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIP 283 (343)
Q Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 283 (343)
..+++.++..|||++|+++ ..|+.+.-+++|++||+++|.|++..+
T Consensus 247 ~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred Hhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc
Confidence 4446777777777777777 567777777777777777777755433
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=8.5e-20 Score=175.80 Aligned_cols=246 Identities=21% Similarity=0.245 Sum_probs=153.2
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcc
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 82 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l 82 (343)
..|+++.+.++.......++|+.|++.+|+++. +|. ..++|++|+|++|+++ .+|.. .++|++|++++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcchhcCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceeeccCCch
Confidence 467888888774333335678888888888774 443 2467888888888887 66642 23677777777776
Q ss_pred cccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCC--------------CccCCCCCcEEEee
Q 042366 83 EGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSN--------------ITFPFQALRIIDLS 148 (343)
Q Consensus 83 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------~~~~~~~L~~L~l~ 148 (343)
+......-.-..|++++|.+... |. ..++|+.|++++|.+.+...... ......+|++|+++
T Consensus 275 ~~Lp~lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS 350 (788)
T PRK15387 275 THLPALPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVS 350 (788)
T ss_pred hhhhhchhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecC
Confidence 64322111114566666666542 22 13556666666666654211000 00011356677777
Q ss_pred CCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCC
Q 042366 149 HNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHN 228 (343)
Q Consensus 149 ~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 228 (343)
+|.++ .+|.. ..+|+.|++++|....-. ..+..|+.|++++|.++ .+|.. .++|+.|++++|
T Consensus 351 ~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~LP---------~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N 412 (788)
T PRK15387 351 DNQLA-SLPTL----PSELYKLWAYNNRLTSLP---------ALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGN 412 (788)
T ss_pred CCccC-CCCCC----CcccceehhhccccccCc---------ccccccceEEecCCccc-CCCCc---ccCCCEEEccCC
Confidence 77766 34431 234555555544322100 11357889999999888 45543 367899999999
Q ss_pred cCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCC
Q 042366 229 SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQ 284 (343)
Q Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 284 (343)
.+.+ +|.. ..+|+.|++++|+|+ .+|..+..+++|+.|++++|+|++..|.
T Consensus 413 ~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 413 RLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 9984 5543 346788999999998 5788888999999999999999876655
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=9.2e-23 Score=175.82 Aligned_cols=293 Identities=24% Similarity=0.350 Sum_probs=193.2
Q ss_pred ccEEEccCCcccccCCC--CCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 2 ITTLDLRNNRIQGSILV--PPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
|++||...|-+....+. .+.+|+.|+|.+|+|. .+| .|.++..|++|.+..|.|. .+|+..++-.++|..||+..
T Consensus 185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred HHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc
Confidence 34455555544432222 2666666777777776 444 5777777777777777776 77888775556889999999
Q ss_pred Ccccccccccccc---cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccc-------------------------c--
Q 042366 80 NSLEGHIHDTFAN---AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDG-------------------------P-- 129 (343)
Q Consensus 80 n~l~~~~~~~~~~---~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~-- 129 (343)
|+++....+...- ..+|+++|.+++ +|..++++ .|+.|-+.+|++.. .
T Consensus 262 Nklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 262 NKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred cccccCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 9988654443332 689999999984 66678888 89999999998630 0
Q ss_pred -------C---CC-CC-CccCCCCCcEEEeeCCcccccCCcccccCcc--ccccccccCcccc-cCCc------------
Q 042366 130 -------L---CN-SN-ITFPFQALRIIDLSHNEFTGFLPRRIFPSME--AMKNVDEQGRLEY-MGGA------------ 182 (343)
Q Consensus 130 -------~---~~-~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~l~~~~~~~~-~~~~------------ 182 (343)
. +. .+ ....+.+.+.|++++-+++ .+|.+.|.... -...++.++|... ....
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLV 418 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHH
Confidence 0 00 00 0112445788888888887 77877766543 2444555554311 1110
Q ss_pred -----ccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccc
Q 042366 183 -----FYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 257 (343)
Q Consensus 183 -----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (343)
........+.+++|..|+|++|.+. .+|..+..+..|+.|+++.|+|. .+|.....+..++.+..++|++..+
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 0011112344789999999999887 78888888889999999999998 6777776667777777777777766
Q ss_pred cchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCC
Q 042366 258 IPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLT 308 (343)
Q Consensus 258 ~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~ 308 (343)
.++.+..+.+|+.||+.+|.|. .+|. -++......++.+.|||+.
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp-----~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPP-----ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCCh-----hhccccceeEEEecCCccC
Confidence 6666777788888888888773 3343 2344445556677777764
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=6e-20 Score=177.64 Aligned_cols=243 Identities=21% Similarity=0.285 Sum_probs=152.1
Q ss_pred ccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCc
Q 042366 2 ITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 81 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~ 81 (343)
.+.|+++++.++.......++++.|+|++|+++. +|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCc
Confidence 4678888888875433346789999999999884 455443 48999999999988 7776553 368999999998
Q ss_pred ccccccccccc--cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcc
Q 042366 82 LEGHIHDTFAN--AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRR 159 (343)
Q Consensus 82 l~~~~~~~~~~--~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 159 (343)
++.. |..+.. +.|++++|.+.. +|..+. ++|+.|++++|.+... +..+ ..+|+.|++++|.++ .+|..
T Consensus 253 L~~L-P~~l~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l----p~sL~~L~Ls~N~Lt-~LP~~ 322 (754)
T PRK15370 253 ITEL-PERLPSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL-PAHL----PSGITHLNVQSNSLT-ALPET 322 (754)
T ss_pred cCcC-ChhHhCCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC-cccc----hhhHHHHHhcCCccc-cCCcc
Confidence 8743 333322 677777777763 454442 4677777777777642 2221 235777777777776 45543
Q ss_pred cccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCcccc
Q 042366 160 IFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 239 (343)
Q Consensus 160 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 239 (343)
.. .+|+.|.++++.... ++...+++|+.|++++|.++ .+|..+. ++|++|+|++|.+. .+|..+.
T Consensus 323 l~---~sL~~L~Ls~N~Lt~--------LP~~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~ 387 (754)
T PRK15370 323 LP---PGLKTLEAGENALTS--------LPASLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP 387 (754)
T ss_pred cc---ccceeccccCCcccc--------CChhhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH
Confidence 32 455666665543211 11112356777777777776 4555442 56777777777776 3444332
Q ss_pred ccCCCCeEeCCCCcCccccchhh----hcCCcCCeEeccCCcCe
Q 042366 240 NMTALESLDLSFNKLDGRIPEQL----LSVTALALLNLSHSRLW 279 (343)
Q Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~N~l~ 279 (343)
..|+.|++++|+++ .+|..+ ..++.+..+++.+|.++
T Consensus 388 --~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 --AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 35677777777776 334333 23456677777777764
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=6.1e-22 Score=170.39 Aligned_cols=271 Identities=20% Similarity=0.181 Sum_probs=201.6
Q ss_pred ccEEEccCCcccc---cCCCCCCCCcEEEccCCcccccCCccccCCCccCeeeccc-ccccccCCchhhcCccCccEEEc
Q 042366 2 ITTLDLRNNRIQG---SILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSD-NNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 2 L~~L~ls~n~l~~---~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
-+.++|..|+|+. ..|+.+++|+.|||++|.|+.+-|++|.+++.|-.|.+-+ |+|+ .+|+..|..+..|+.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhc
Confidence 3578999999985 4566699999999999999999999999999988887777 9999 899998887779999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccC----------CCCCCccCCCCCc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPL----------CNSNITFPFQALR 143 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~~~~~L~ 143 (343)
.-|++.....++|.. ..|.+..|.+..+-...|..+.+++++.+..|++...- ....++....-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999999888888776 56778889888777778999999999999999854210 0001111111122
Q ss_pred EEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchh---HHHHhccCeeeccCCcccccCcccccCCCCC
Q 042366 144 IIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESIT---QKILVMFRAMDFSSNRFHGEIPEVLGNFKSL 220 (343)
Q Consensus 144 ~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 220 (343)
-..+.+..+...-+..+...++.+..--.+ ..+....-+ ...+++|++|+|++|.++++-+.+|.+..++
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~-------~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSS-------EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhcc-------ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 222233333211111111111111110000 111111111 2337899999999999999999999999999
Q ss_pred CEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCee
Q 042366 221 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 221 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
++|.|..|++..+....|.++..|+.|+|.+|+|+...|.+|..+.+|..|++-.|.+..
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 999999999987777889999999999999999999999999999999999998887643
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=5.7e-21 Score=179.90 Aligned_cols=182 Identities=23% Similarity=0.316 Sum_probs=106.2
Q ss_pred cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCC---------------------CccCCCCCcEEEeeCCc
Q 042366 93 AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSN---------------------ITFPFQALRIIDLSHNE 151 (343)
Q Consensus 93 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------~~~~~~~L~~L~l~~n~ 151 (343)
+.++++.|++.... .++..+.+|+.++..+|.+... +... ...++..|++|+|..|.
T Consensus 244 ~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 244 QYLDISHNNLSNLP-EWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred eeeecchhhhhcch-HHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 45666666665433 6677777777777777766321 1000 11335567777777776
Q ss_pred ccccCCcccccCccc-cccccccCcccccCCcc------------------cCcchh-HHHHhccCeeeccCCcccccCc
Q 042366 152 FTGFLPRRIFPSMEA-MKNVDEQGRLEYMGGAF------------------YDESIT-QKILVMFRAMDFSSNRFHGEIP 211 (343)
Q Consensus 152 l~~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~------------------~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~ 211 (343)
+. ..|+.++..... +..++.+.+....-..+ -...++ ...+++|+.|+|++|++.....
T Consensus 322 L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 322 LP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 65 555555544443 44444443322111100 001111 1225666777777777664444
Q ss_pred ccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCee
Q 042366 212 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 212 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
..+.+++.|++|+||+|+++ .+|+....+..|++|...+|++. ..| .+..++.|+.+|++.|+|+.
T Consensus 401 s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 45566667777777777776 55566666677777777777776 455 57788899999999999864
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=5.8e-19 Score=170.83 Aligned_cols=224 Identities=21% Similarity=0.322 Sum_probs=171.0
Q ss_pred CccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 1 NITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
+|+.|++++|.|+.......++|++|++++|+++ .+|..+. .+|+.|+|++|.++ .+|..+. .+|++|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCC
Confidence 4789999999998644444789999999999999 4565553 47999999999998 8888764 37999999999
Q ss_pred cccccccccccc--cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCc
Q 042366 81 SLEGHIHDTFAN--AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPR 158 (343)
Q Consensus 81 ~l~~~~~~~~~~--~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 158 (343)
+++.. |..+.. +.|++++|.+.. +|..+. ++|+.|++++|.+.. .+... .++|+.|++++|.++ .+|.
T Consensus 273 ~L~~L-P~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~Lt-~LP~ 342 (754)
T PRK15370 273 KISCL-PENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL----PPGLKTLEAGENALT-SLPA 342 (754)
T ss_pred ccCcc-ccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc----cccceeccccCCccc-cCCh
Confidence 99854 444433 899999999985 444332 579999999999875 23322 368999999999998 4675
Q ss_pred ccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccc
Q 042366 159 RIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 238 (343)
Q Consensus 159 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 238 (343)
.+ .++|+.|++++|.... ++...++.|++|++++|.++ .+|..+. ..|+.|++++|++. .+|..+
T Consensus 343 ~l---~~sL~~L~Ls~N~L~~--------LP~~lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 343 SL---PPELQVLDVSKNQITV--------LPETLPPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred hh---cCcccEEECCCCCCCc--------CChhhcCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 54 3678888888874321 11122568999999999998 5666554 47999999999998 555544
Q ss_pred ----cccCCCCeEeCCCCcCcc
Q 042366 239 ----ENMTALESLDLSFNKLDG 256 (343)
Q Consensus 239 ----~~l~~L~~L~L~~n~l~~ 256 (343)
..++.+..|++.+|.++.
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHhhcCCCccEEEeeCCCccH
Confidence 345788999999999973
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=6.5e-21 Score=179.56 Aligned_cols=263 Identities=22% Similarity=0.258 Sum_probs=198.0
Q ss_pred CccEEEccCCcccccCCCC-CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 1 NITTLDLRNNRIQGSILVP-PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
+++.|+.++|.++...... ..+|+++++++|+++ .+|+++..+.+|+.|...+|.++ .+|..++... +|+.|.+.+
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~ 296 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRIT-SLVSLSAAY 296 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhh-hHHHHHhhh
Confidence 3567777777777544444 788999999999998 45588999999999999999997 8898888886 899999999
Q ss_pred Ccccccccccc--cc-cEEEeccCCCCCCcCccccCCCC-cCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccccc
Q 042366 80 NSLEGHIHDTF--AN-AIVNVENNMTSDSFPCWLGSLPV-LKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGF 155 (343)
Q Consensus 80 n~l~~~~~~~~--~~-~~l~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 155 (343)
|.+.-..+.-- .. +.|+|..|++....+..+..+.. |..|+.+.|++.... .+.-..+..|+.|++.+|.++..
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCccccc
Confidence 98874433221 11 67777777776544444443333 666666666665322 22224567799999999999855
Q ss_pred CCcccccCccccccccccCcccc-cCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCC
Q 042366 156 LPRRIFPSMEAMKNVDEQGRLEY-MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI 234 (343)
Q Consensus 156 ~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 234 (343)
+-. .+.+..+|+.|++++|... +....+. .+..|++|+||+|+++ .+|+.+..+..|++|...+|.+. ..
T Consensus 375 c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~------kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f 445 (1081)
T KOG0618|consen 375 CFP-VLVNFKHLKVLHLSYNRLNSFPASKLR------KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF 445 (1081)
T ss_pred chh-hhccccceeeeeecccccccCCHHHHh------chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence 433 3678899999999998543 4333322 2789999999999999 78899999999999999999999 77
Q ss_pred CccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcC
Q 042366 235 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 278 (343)
| .+..++.|+.+|++.|+++......-...++|++||+++|.=
T Consensus 446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 7 678899999999999999865433333348999999999974
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2.4e-18 Score=165.80 Aligned_cols=225 Identities=23% Similarity=0.240 Sum_probs=153.8
Q ss_pred CccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeec--------------------cccccccc
Q 042366 1 NITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSL--------------------SDNNLSGT 60 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--------------------~~n~i~~~ 60 (343)
+|+.|++++|+++. +|..+++|++|++++|+++.+ |.. .++|+.|+| ++|+++ .
T Consensus 223 ~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~ 296 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-S 296 (788)
T ss_pred CCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcc-cCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccc-c
Confidence 46788888888875 455578888888888888743 432 234444544 444444 3
Q ss_pred CCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCC
Q 042366 61 IPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQ 140 (343)
Q Consensus 61 ~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 140 (343)
+|. ..++|++|++++|++++.......-..|++++|.+.. +|.. ..+|+.|++++|++.+. |. ...
T Consensus 297 LP~----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L-P~-----lp~ 362 (788)
T PRK15387 297 LPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL-PT-----LPS 362 (788)
T ss_pred ccc----cccccceeECCCCccccCCCCcccccccccccCcccc-cccc---ccccceEecCCCccCCC-CC-----CCc
Confidence 433 1235777777777766532211112456667776654 3321 24799999999999853 22 135
Q ss_pred CCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCC
Q 042366 141 ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSL 220 (343)
Q Consensus 141 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 220 (343)
+|+.|++++|.+. .+|.. ..+|+.|++++|....-.. ..++|+.|++++|.++ .+|.. ..+|
T Consensus 363 ~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~LP~---------l~s~L~~LdLS~N~Ls-sIP~l---~~~L 424 (788)
T PRK15387 363 ELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTSLPV---------LPSELKELMVSGNRLT-SLPML---PSGL 424 (788)
T ss_pred ccceehhhccccc-cCccc----ccccceEEecCCcccCCCC---------cccCCCEEEccCCcCC-CCCcc---hhhh
Confidence 7889999999998 56642 3568888888775332111 1468999999999998 46653 3578
Q ss_pred CEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhc
Q 042366 221 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 264 (343)
Q Consensus 221 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (343)
+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+..+..
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 89999999999 68888999999999999999999877766643
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=2.6e-17 Score=169.03 Aligned_cols=247 Identities=15% Similarity=0.193 Sum_probs=128.2
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccc----cEE
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFAN----AIV 95 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----~~l 95 (343)
..+|+.|.+.++.++ .+|..| ...+|+.|++++|.+. .++..+..+. +|++|+++++......|. +.. +.|
T Consensus 588 p~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCC-CCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence 345666666666665 444444 3456666666666665 5555554443 566666665543222222 111 556
Q ss_pred EeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeC---------------------Ccccc
Q 042366 96 NVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSH---------------------NEFTG 154 (343)
Q Consensus 96 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~---------------------n~l~~ 154 (343)
++++|.....+|..+..+++|+.|++++|......|.. ..+++|+.|++++ |.+.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~- 738 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE- 738 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-
Confidence 66666555556666666666666666665433222222 1344444554444 4443
Q ss_pred cCCcccccCccccccccccCcccc-cCCccc-CcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCcc
Q 042366 155 FLPRRIFPSMEAMKNVDEQGRLEY-MGGAFY-DESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTG 232 (343)
Q Consensus 155 ~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 232 (343)
.+|..+ .+++|..|.+...... ...... ........+++|++|++++|.....+|..+..+++|+.|++++|..-+
T Consensus 739 ~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 739 EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 333321 2334444433321100 000000 000011124577778887776665677777777777777777764222
Q ss_pred CCCcccccc---------------------CCCCeEeCCCCcCccccchhhhcCCcCCeEeccCC-cCe
Q 042366 233 NIPVSFENM---------------------TALESLDLSFNKLDGRIPEQLLSVTALALLNLSHS-RLW 279 (343)
Q Consensus 233 ~~~~~~~~l---------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~ 279 (343)
.+|... .+ .+|+.|+|++|.++ .+|.++..+++|+.|++++| .+.
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 344322 22 34566666666666 45667777777888888763 443
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=2.8e-19 Score=159.79 Aligned_cols=284 Identities=20% Similarity=0.193 Sum_probs=160.0
Q ss_pred EEEccCCcccccC----CCCCCCCcEEEccCCcccc----cCCccccCCCccCeeecccccccc------cCCchhhcCc
Q 042366 4 TLDLRNNRIQGSI----LVPPPSTEVFLVSNNKLSG----RIPPSICSLSFLQYLSLSDNNLSG------TIPPCLGNFS 69 (343)
Q Consensus 4 ~L~ls~n~l~~~~----~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~------~~p~~~~~~~ 69 (343)
.|+|..+.+++.. +..+.+|++++++++.++. .++..+...+.|++|+++++.+.+ .++..+...
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~- 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG- 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-
Confidence 4677777776422 2336778889998888853 244556667778888888887751 123334443
Q ss_pred cCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCC--CccCC-CCCcEEE
Q 042366 70 TELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSN--ITFPF-QALRIID 146 (343)
Q Consensus 70 ~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~-~~L~~L~ 146 (343)
++|++|++++|.+....+..+.. .... ++|+.|++++|.+.+.....+ ....+ ++|+.|+
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~----------------l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLES----------------LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHH----------------Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 48888999888886433322211 0111 336666666665542100000 01223 5566666
Q ss_pred eeCCcccccCCc---ccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCccccc----CcccccCCCC
Q 042366 147 LSHNEFTGFLPR---RIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGE----IPEVLGNFKS 219 (343)
Q Consensus 147 l~~n~l~~~~~~---~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~ 219 (343)
+++|.+++.... ..+..+.+|+.++++++.....+. ..........+.|++|++++|.+++. ++..+..+++
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI-RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH-HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 666655422111 112333455555555442211000 00000001135899999999988643 3445667889
Q ss_pred CCEEEccCCcCccCCCcccc-----ccCCCCeEeCCCCcCccc----cchhhhcCCcCCeEeccCCcCeecCCCCCccCC
Q 042366 220 LKVLNLSHNSLTGNIPVSFE-----NMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSHSRLWGRIPQGNQFNT 290 (343)
Q Consensus 220 L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 290 (343)
|++|++++|.+.+.....+. ..+.|++|++++|.+++. +...+..+++|+.+++++|.++..... .....
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~-~~~~~ 301 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ-LLAES 301 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH-HHHHH
Confidence 99999999998853332222 237999999999999732 344566678899999999999532111 11111
Q ss_pred CCcc-cccCCCCCCCCCC
Q 042366 291 FAND-SYFGNIHLCGEPL 307 (343)
Q Consensus 291 ~~~~-~~~~~~~l~~np~ 307 (343)
+... .....+++.+|||
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 1222 3445566666665
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=3.3e-16 Score=161.01 Aligned_cols=252 Identities=19% Similarity=0.197 Sum_probs=177.6
Q ss_pred cccCCCCCCCCcEEEccCCc------ccccCCccccCCC-ccCeeecccccccccCCchhhcCccCccEEEcccCccccc
Q 042366 13 QGSILVPPPSTEVFLVSNNK------LSGRIPPSICSLS-FLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGH 85 (343)
Q Consensus 13 ~~~~~~~~~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~ 85 (343)
....|..+++|+.|.+..+. +...+|..|..++ +|+.|.+.++.++ .+|..+ .. .+|++|++.+|.+...
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~-~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RP-ENLVKLQMQGSKLEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-Cc-cCCcEEECcCcccccc
Confidence 34557779999999997654 3345677787775 6999999999998 888876 34 4899999999998754
Q ss_pred ccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccc
Q 042366 86 IHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 161 (343)
Q Consensus 86 ~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 161 (343)
.. .+.. +.++++++.....+|. +..+++|+.|++++|......|..+ ..+++|+.|++++|.....+|...
T Consensus 627 ~~-~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 627 WD-GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cc-ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcC-
Confidence 32 2222 8999999876666764 7778999999999987666566655 778999999999976555777654
Q ss_pred cCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccc---------------------------
Q 042366 162 PSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVL--------------------------- 214 (343)
Q Consensus 162 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l--------------------------- 214 (343)
.+++|+.|+++++.....- + ....+|++|++++|.+. .+|..+
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~-------p-~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSF-------P-DISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred -CCCCCCEEeCCCCCCcccc-------c-cccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccch
Confidence 6888999988876421110 0 11456778888888765 344322
Q ss_pred ---cCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCC
Q 042366 215 ---GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIP 283 (343)
Q Consensus 215 ---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 283 (343)
..+++|+.|+|++|.....+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|......|
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 113466777777776555667777777777777777764333455544 56777777777765434444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.9e-19 Score=137.53 Aligned_cols=183 Identities=29% Similarity=0.506 Sum_probs=125.9
Q ss_pred cCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEe
Q 042366 42 CSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVL 121 (343)
Q Consensus 42 ~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l 121 (343)
..+.++..|.||+|+++ .+|..+..+. +|+.|++++|+|+ .+|..+..+++|+.|++
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~-nlevln~~nnqie---------------------~lp~~issl~klr~lnv 86 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELK-NLEVLNLSNNQIE---------------------ELPTSISSLPKLRILNV 86 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhh-hhhhhhcccchhh---------------------hcChhhhhchhhhheec
Confidence 34566777777777777 7777777775 7777777777776 55666666777777777
Q ss_pred cCCcccccCCCCCCccCCCCCcEEEeeCCcccc-cCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeee
Q 042366 122 RSNRFDGPLCNSNITFPFQALRIIDLSHNEFTG-FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMD 200 (343)
Q Consensus 122 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 200 (343)
..|++.- .|..| ..++-|+.||+.+|.+.. .+|.++|. +..|+.|+
T Consensus 87 gmnrl~~-lprgf--gs~p~levldltynnl~e~~lpgnff~------------------------------m~tlraly 133 (264)
T KOG0617|consen 87 GMNRLNI-LPRGF--GSFPALEVLDLTYNNLNENSLPGNFFY------------------------------MTTLRALY 133 (264)
T ss_pred chhhhhc-Ccccc--CCCchhhhhhccccccccccCCcchhH------------------------------HHHHHHHH
Confidence 7776652 34444 566777777777776642 34444432 66777888
Q ss_pred ccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCC---cCCeEeccCCc
Q 042366 201 FSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT---ALALLNLSHSR 277 (343)
Q Consensus 201 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~N~ 277 (343)
|+.|.+. .+|..+.++++|+.|.+..|.+- .+|..++.++.|++|.+.+|+++ .+|..+..+. +=+.+.+.+|.
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENP 210 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCC
Confidence 8888887 77777888888888888888887 67777888888888888888888 4555444332 22345566666
Q ss_pred CeecCC
Q 042366 278 LWGRIP 283 (343)
Q Consensus 278 l~~~~p 283 (343)
....+.
T Consensus 211 wv~pIa 216 (264)
T KOG0617|consen 211 WVNPIA 216 (264)
T ss_pred CCChHH
Confidence 544333
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=3.9e-19 Score=136.82 Aligned_cols=177 Identities=27% Similarity=0.467 Sum_probs=147.0
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
+.+++.|.|++|+++ .+|..++.+.+|+.|++++|+|+ .+|..+.++. +|++|+++-|++.
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~-klr~lnvgmnrl~---------------- 92 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLP-KLRILNVGMNRLN---------------- 92 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhch-hhhheecchhhhh----------------
Confidence 778899999999999 66778999999999999999999 9999999986 8999999999987
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCcccc-cCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccc
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDG-PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 178 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~ 178 (343)
..|..|+.+|.|+.|+++.|.+.. ..|..| ..+..|+.|++++|.+. .+|..+.
T Consensus 93 -----~lprgfgs~p~levldltynnl~e~~lpgnf--f~m~tlralyl~dndfe-~lp~dvg----------------- 147 (264)
T KOG0617|consen 93 -----ILPRGFGSFPALEVLDLTYNNLNENSLPGNF--FYMTTLRALYLGDNDFE-ILPPDVG----------------- 147 (264)
T ss_pred -----cCccccCCCchhhhhhccccccccccCCcch--hHHHHHHHHHhcCCCcc-cCChhhh-----------------
Confidence 788999999999999999999876 344455 66889999999999997 6776531
Q ss_pred cCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccC---CCCeEeCCCCcCc
Q 042366 179 MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT---ALESLDLSFNKLD 255 (343)
Q Consensus 179 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~l~ 255 (343)
.+++|+.|.+..|.+- .+|..+..+..|++|.+.+|+++ .+|..++.+. +=+...+.+|...
T Consensus 148 -------------~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 148 -------------KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred -------------hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 2778899999999988 78999999999999999999999 5554444432 2233445555543
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=9.6e-18 Score=149.85 Aligned_cols=260 Identities=25% Similarity=0.256 Sum_probs=154.1
Q ss_pred ccEEEccCCccccc-------CCCCCCCCcEEEccCCcccc------cCCccccCCCccCeeecccccccccCCchhhcC
Q 042366 2 ITTLDLRNNRIQGS-------ILVPPPSTEVFLVSNNKLSG------RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNF 68 (343)
Q Consensus 2 L~~L~ls~n~l~~~-------~~~~~~~L~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~ 68 (343)
|+.|+++++.++.. .....++++.++++++.+.+ .++..+..+++|++|++++|.+.+..+..+...
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 78999999998531 23347789999999998772 344567889999999999999975555555444
Q ss_pred c--cCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCC-CCcCEEEecCCcccccCCCCC--CccCCCCCc
Q 042366 69 S--TELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSL-PVLKILVLRSNRFDGPLCNSN--ITFPFQALR 143 (343)
Q Consensus 69 ~--~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~--~~~~~~~L~ 143 (343)
. ++|++|++++|++++.....+ ...+..+ ++|+.|++++|.+.+.....+ .+..+++|+
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l----------------~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~ 168 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLL----------------AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHH----------------HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC
Confidence 4 239999999999874222111 1122223 445555555555442110000 012334455
Q ss_pred EEEeeCCcccccCCccc---ccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCccccc-----
Q 042366 144 IIDLSHNEFTGFLPRRI---FPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLG----- 215 (343)
Q Consensus 144 ~L~l~~n~l~~~~~~~~---~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~----- 215 (343)
+|++++|.+.+.....+ +...++|+.++++++.....+.. ........+++|++|++++|.+++.....+.
T Consensus 169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS-ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247 (319)
T ss_pred EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH-HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence 55555554442111111 11223444444444321100000 0000011257899999999998753332222
Q ss_pred CCCCCCEEEccCCcCcc----CCCccccccCCCCeEeCCCCcCccc----cchhhhcC-CcCCeEeccCCcC
Q 042366 216 NFKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLDGR----IPEQLLSV-TALALLNLSHSRL 278 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~l~~N~l 278 (343)
..+.|++|++++|.+++ .+...+..+++|+.+++++|.++.. ....+... +.|+++++.+|.+
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 24799999999999873 2234455668999999999999854 44455555 6899999988764
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=1.1e-13 Score=125.01 Aligned_cols=194 Identities=30% Similarity=0.450 Sum_probs=137.1
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
+......||+.|++. .+|..+..+..|+.+.|.+|.+. .+|..++.+. .|.+|+++.|+++
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~-~lt~l~ls~NqlS---------------- 134 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE-ALTFLDLSSNQLS---------------- 134 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh-HHHHhhhccchhh----------------
Confidence 555677888888888 67777888888888888888887 8888888886 7888888888887
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCccccc
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 179 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~ 179 (343)
.+|..+..++ |+.|.+++|+++. .|... .....|..||.+.|++. .+|..+ ..
T Consensus 135 -----~lp~~lC~lp-Lkvli~sNNkl~~-lp~~i--g~~~tl~~ld~s~nei~-slpsql-~~---------------- 187 (722)
T KOG0532|consen 135 -----HLPDGLCDLP-LKVLIVSNNKLTS-LPEEI--GLLPTLAHLDVSKNEIQ-SLPSQL-GY---------------- 187 (722)
T ss_pred -----cCChhhhcCc-ceeEEEecCcccc-CCccc--ccchhHHHhhhhhhhhh-hchHHh-hh----------------
Confidence 5555555555 8888888888874 34444 45677888888888876 455432 22
Q ss_pred CCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccc
Q 042366 180 GGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 259 (343)
Q Consensus 180 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (343)
+.+|+.|.+..|.+. .+|..+. .-.|.+||++.|++. .+|-.|..|+.|+.|-|.+|.+.. .|
T Consensus 188 -------------l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PP 250 (722)
T KOG0532|consen 188 -------------LTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PP 250 (722)
T ss_pred -------------HHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-Ch
Confidence 556666777777776 5666665 346778888888887 677778888888888888888873 44
Q ss_pred hhhhc---CCcCCeEeccCC
Q 042366 260 EQLLS---VTALALLNLSHS 276 (343)
Q Consensus 260 ~~~~~---l~~L~~L~l~~N 276 (343)
..+.. ..-.++|+.+.+
T Consensus 251 AqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 251 AQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHHHhccceeeeeeecchhc
Confidence 44432 222456666555
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=4.4e-12 Score=116.78 Aligned_cols=194 Identities=35% Similarity=0.444 Sum_probs=108.1
Q ss_pred EEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCC
Q 042366 25 VFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSD 104 (343)
Q Consensus 25 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~ 104 (343)
.+++..+.+... ...+..+..++.|++.+|.++ .++........+|+.|+++.|.+.
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~--------------------- 153 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE--------------------- 153 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh---------------------
Confidence 466666665322 223344566777777777777 666555444115777777777776
Q ss_pred CcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCccc
Q 042366 105 SFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFY 184 (343)
Q Consensus 105 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 184 (343)
.+|..++.+++|+.|+++.|++....+.. ...+.|+.|++++|.+. .+|... ..
T Consensus 154 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~---~~~~~L~~L~ls~N~i~-~l~~~~-~~--------------------- 207 (394)
T COG4886 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLL---SNLSNLNNLDLSGNKIS-DLPPEI-EL--------------------- 207 (394)
T ss_pred hhhhhhhccccccccccCCchhhhhhhhh---hhhhhhhheeccCCccc-cCchhh-hh---------------------
Confidence 33344566788888888888877533221 14677888888888877 555431 12
Q ss_pred CcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhc
Q 042366 185 DESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 264 (343)
Q Consensus 185 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (343)
...|+++.+++|.+. ..+..+..+..+..+.+.+|++. ..+..++.++.+++|++++|.++.... +..
T Consensus 208 --------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~ 275 (394)
T COG4886 208 --------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGS 275 (394)
T ss_pred --------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccc
Confidence 233455555555332 33444445555555555555554 223444455555555555555553222 445
Q ss_pred CCcCCeEeccCCcCe
Q 042366 265 VTALALLNLSHSRLW 279 (343)
Q Consensus 265 l~~L~~L~l~~N~l~ 279 (343)
..+++.|++++|.++
T Consensus 276 ~~~l~~L~~s~n~~~ 290 (394)
T COG4886 276 LTNLRELDLSGNSLS 290 (394)
T ss_pred cCccCEEeccCcccc
Confidence 555555555555554
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-13 Score=117.68 Aligned_cols=244 Identities=23% Similarity=0.287 Sum_probs=142.1
Q ss_pred ccEEEccCCcccc-------cCCCCCCCCcEEEccCC---cccccCC-------ccccCCCccCeeecccccccccCCch
Q 042366 2 ITTLDLRNNRIQG-------SILVPPPSTEVFLVSNN---KLSGRIP-------PSICSLSFLQYLSLSDNNLSGTIPPC 64 (343)
Q Consensus 2 L~~L~ls~n~l~~-------~~~~~~~~L~~L~L~~n---~i~~~~~-------~~~~~l~~L~~L~L~~n~i~~~~p~~ 64 (343)
++.++||+|.+.. ......+.|+.-++++- +....+| .++.++++|++|+||+|-+....+..
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 5677888887742 33344567777777664 2222222 33456678888888888776444433
Q ss_pred hhcC---ccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCC--CCCccCC
Q 042366 65 LGNF---STELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCN--SNITFPF 139 (343)
Q Consensus 65 ~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~ 139 (343)
+..+ ...|++|.|.+|.+.......++....++..+ ...+.-+.|+++...+|++...... ...+...
T Consensus 112 l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN-------KKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH-------hccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 3222 23688888888877644433333211111111 1122346788888888877542111 1112445
Q ss_pred CCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccc----cCccccc
Q 042366 140 QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHG----EIPEVLG 215 (343)
Q Consensus 140 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~l~ 215 (343)
+.|+.+.+..|.|.......+.. ....+++|+.|||..|-++. .+...++
T Consensus 185 ~~leevr~~qN~I~~eG~~al~e--------------------------al~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAE--------------------------ALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred cccceEEEecccccCchhHHHHH--------------------------HHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 67777788777765221100000 01226778888888887763 3445666
Q ss_pred CCCCCCEEEccCCcCccCCCccc-----cccCCCCeEeCCCCcCccc----cchhhhcCCcCCeEeccCCcC
Q 042366 216 NFKSLKVLNLSHNSLTGNIPVSF-----ENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l 278 (343)
.+++|++|++++|.+.......| ...++|+.|.+.+|.|+.. +.......+.|+.|+|++|++
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 77888888888888765443333 2357888888888888753 222334567888888888888
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=1.9e-11 Score=118.03 Aligned_cols=117 Identities=37% Similarity=0.617 Sum_probs=99.9
Q ss_pred ccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEecc
Q 042366 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 274 (343)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 274 (343)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCeecCCCCCc--cCCCCcccccCCCCCCCCCCCCCC
Q 042366 275 HSRLWGRIPQGNQ--FNTFANDSYFGNIHLCGEPLTMRC 311 (343)
Q Consensus 275 ~N~l~~~~p~~~~--~~~~~~~~~~~~~~l~~np~~~~C 311 (343)
+|.+++.+|.... ......+.+.+|..+|+.|-.-.|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 9999999997522 112234556667777776643334
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=2.9e-12 Score=102.42 Aligned_cols=107 Identities=25% Similarity=0.306 Sum_probs=26.1
Q ss_pred CCCCcEEEccCCcccccCCcccc-CCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEec
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSIC-SLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVE 98 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~ 98 (343)
+..+++|+|.+|.|+.+ +.++ .+.+|+.|+|++|.|+ .++ .+..+. +|++|++++|.|+...
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~-~L~~L~L~~N~I~~i~------------ 80 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLP-RLKTLDLSNNRISSIS------------ 80 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----T-T--EEE--SS---S-C------------
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChh-hhhhcccCCCCCCccc------------
Confidence 44566666666666633 2333 3556666666666665 443 333333 6666666666665321
Q ss_pred cCCCCCCcCccc-cCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 99 NNMTSDSFPCWL-GSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 99 ~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
..+ ..+++|+.|++++|++..... ......+++|+.|++.+|+++
T Consensus 81 ---------~~l~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 81 ---------EGLDKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ---------HHHHHH-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGG
T ss_pred ---------cchHHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCccc
Confidence 111 124556666666665544211 111234555666666666554
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=2.9e-13 Score=122.38 Aligned_cols=188 Identities=28% Similarity=0.398 Sum_probs=145.7
Q ss_pred cEEEccCCcccccCC--CCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 3 TTLDLRNNRIQGSIL--VPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
...|++.|++..... ..+..|+.+.|..|.+. .+|..+..+..|.+|+|+.|+++ .+|..++.+. |+.|.+++|
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNN 153 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecC
Confidence 346888888774222 22788999999999999 77889999999999999999999 9999999985 999999999
Q ss_pred cccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCccc
Q 042366 81 SLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 160 (343)
Q Consensus 81 ~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 160 (343)
+++ .+|..++.+..|..|+.+.|.+... +... ..+.+|+.|.+..|++. .+|.+.
T Consensus 154 kl~---------------------~lp~~ig~~~tl~~ld~s~nei~sl-psql--~~l~slr~l~vrRn~l~-~lp~El 208 (722)
T KOG0532|consen 154 KLT---------------------SLPEEIGLLPTLAHLDVSKNEIQSL-PSQL--GYLTSLRDLNVRRNHLE-DLPEEL 208 (722)
T ss_pred ccc---------------------cCCcccccchhHHHhhhhhhhhhhc-hHHh--hhHHHHHHHHHhhhhhh-hCCHHH
Confidence 998 5666677778899999999988753 3333 56788888888888887 566553
Q ss_pred ccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccc
Q 042366 161 FPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN 240 (343)
Q Consensus 161 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 240 (343)
. . -.|..||++.|++. .+|..|.+|..|++|-|.+|.++ ..|..+.-
T Consensus 209 ~-~------------------------------LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 209 C-S------------------------------LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred h-C------------------------------CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 2 1 13677889999988 78888999999999999999888 55554421
Q ss_pred ---cCCCCeEeCCCC
Q 042366 241 ---MTALESLDLSFN 252 (343)
Q Consensus 241 ---l~~L~~L~L~~n 252 (343)
..--++|+..-+
T Consensus 256 kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQAC 270 (722)
T ss_pred ccceeeeeeecchhc
Confidence 122355666655
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.2e-12 Score=111.55 Aligned_cols=162 Identities=21% Similarity=0.251 Sum_probs=83.7
Q ss_pred CCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHH
Q 042366 112 SLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQK 191 (343)
Q Consensus 112 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 191 (343)
.+|+|+.|+++.|++....... ....++.|+.|.++.|.++..--..+...+++++.|.+.+|... .....+..
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~-~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-----~~~~~~~~ 243 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSN-TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-----LIKATSTK 243 (505)
T ss_pred hcccchhcccccccccCCcccc-chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-----ceecchhh
Confidence 3455555555555443211111 11234445555555555543322223333444444444443210 01112223
Q ss_pred HHhccCeeeccCCcccccCc--ccccCCCCCCEEEccCCcCccC-CCcc-----ccccCCCCeEeCCCCcCccc-cchhh
Q 042366 192 ILVMFRAMDFSSNRFHGEIP--EVLGNFKSLKVLNLSHNSLTGN-IPVS-----FENMTALESLDLSFNKLDGR-IPEQL 262 (343)
Q Consensus 192 ~~~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~~-~~~~~ 262 (343)
.++.|++|+|++|.+. ..+ .....++.|+.|+++.+.+.++ .|+. ...+++|+.|++..|+|.+. .-..+
T Consensus 244 i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred hhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence 4777888888888776 233 3455677888888888877643 2222 23457788888888888532 12234
Q ss_pred hcCCcCCeEeccCCcCee
Q 042366 263 LSVTALALLNLSHSRLWG 280 (343)
Q Consensus 263 ~~l~~L~~L~l~~N~l~~ 280 (343)
..+++|+.|.+..|.++.
T Consensus 323 ~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccchhhhhhcccccccc
Confidence 455667777777776643
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=2.3e-11 Score=112.04 Aligned_cols=196 Identities=32% Similarity=0.454 Sum_probs=133.5
Q ss_pred EEEccCCcccccCCCC--CCCCcEEEccCCcccccCCccccCCC-ccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 4 TLDLRNNRIQGSILVP--PPSTEVFLVSNNKLSGRIPPSICSLS-FLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 4 ~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
.++++.+.+....... ...++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+. +|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~-~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP-NLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccc-cccccccCCc
Confidence 3666666664333222 568999999999999 4555566664 9999999999998 8876777775 8999999999
Q ss_pred cccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCccc
Q 042366 81 SLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 160 (343)
Q Consensus 81 ~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 160 (343)
+++. +|......++|+.|++++|++....+.. .....|++|.+++|.+. ..+..
T Consensus 174 ~l~~---------------------l~~~~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~~~-~~~~~- 227 (394)
T COG4886 174 DLSD---------------------LPKLLSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNSII-ELLSS- 227 (394)
T ss_pred hhhh---------------------hhhhhhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCcce-ecchh-
Confidence 9983 3433335788999999999887532221 12445888899888533 12211
Q ss_pred ccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccc
Q 042366 161 FPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN 240 (343)
Q Consensus 161 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 240 (343)
... +..+..+.+..|.+. ..+..+..++.+++|++++|.+..... ++.
T Consensus 228 ~~~-----------------------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~ 275 (394)
T COG4886 228 LSN-----------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGS 275 (394)
T ss_pred hhh-----------------------------cccccccccCCceee-eccchhccccccceecccccccccccc--ccc
Confidence 111 445555666666665 335666677777888888877774433 667
Q ss_pred cCCCCeEeCCCCcCccccch
Q 042366 241 MTALESLDLSFNKLDGRIPE 260 (343)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~ 260 (343)
+.+++.|++++|.+....+.
T Consensus 276 ~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 276 LTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cCccCEEeccCccccccchh
Confidence 77778888877777654443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.2e-12 Score=111.58 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=120.3
Q ss_pred cccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcch
Q 042366 109 WLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESI 188 (343)
Q Consensus 109 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 188 (343)
....+++++.|++++|-+....+..-+...+++|+.|+++.|.+........-..+.+++.|.++++.....+.. .
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~----~ 216 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ----W 216 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH----H
Confidence 455789999999999988765444444467899999999999987555555555678888888887754422211 1
Q ss_pred hHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCC-CccccccCCCCeEeCCCCcCccc-cchh-----
Q 042366 189 TQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGR-IPEQ----- 261 (343)
Q Consensus 189 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~----- 261 (343)
....+|.|+.|+|.+|...........-+..|++|||++|.+-+.. -...+.++.|+.|+++.+.|+++ .|+.
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k 296 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK 296 (505)
T ss_pred HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhh
Confidence 1233889999999999532233344455788999999999886322 13456789999999999999865 3333
Q ss_pred hhcCCcCCeEeccCCcC
Q 042366 262 LLSVTALALLNLSHSRL 278 (343)
Q Consensus 262 ~~~l~~L~~L~l~~N~l 278 (343)
...+++|++|++..|+|
T Consensus 297 t~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNI 313 (505)
T ss_pred hcccccceeeecccCcc
Confidence 35678999999999999
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=8.4e-11 Score=77.56 Aligned_cols=61 Identities=41% Similarity=0.560 Sum_probs=37.8
Q ss_pred CCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcC
Q 042366 218 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 278 (343)
++|++|++++|+++...++.|.++++|++|++++|+++...+.+|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3456666666666655555666666666666666666655555666666666666666654
No 33
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.07 E-value=5.3e-12 Score=117.36 Aligned_cols=188 Identities=22% Similarity=0.271 Sum_probs=124.3
Q ss_pred CCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccC-----------C
Q 042366 113 LPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG-----------G 181 (343)
Q Consensus 113 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~-----------~ 181 (343)
+++++.|.+-.-+-.+... .+...++.+||+|.+.++.+.. ..++..--..|+.|...+...... .
T Consensus 83 lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccccc
Confidence 4555666555544433221 3333678899999999998864 233333334445554443321111 1
Q ss_pred cccCc---------------chhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCe
Q 042366 182 AFYDE---------------SITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 246 (343)
Q Consensus 182 ~~~~~---------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 246 (343)
.+.+. .-....++.++.|+|++|+++.. +.+..+++|++|||++|.++ ..|..-..-.+|+.
T Consensus 160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~ 236 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQL 236 (1096)
T ss_pred chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhhee
Confidence 11111 11134478999999999999733 37888999999999999998 44443222245999
Q ss_pred EeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCC
Q 042366 247 LDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDG 315 (343)
Q Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~ 315 (343)
|.+++|.++. ...+.++.+|+.||+++|-|.+ ...+..+..+..+..+++.|||+ |..+|
T Consensus 237 L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~----hseL~pLwsLs~L~~L~LeGNPl---~c~p~ 296 (1096)
T KOG1859|consen 237 LNLRNNALTT--LRGIENLKSLYGLDLSYNLLSE----HSELEPLWSLSSLIVLWLEGNPL---CCAPW 296 (1096)
T ss_pred eeecccHHHh--hhhHHhhhhhhccchhHhhhhc----chhhhHHHHHHHHHHHhhcCCcc---ccCHH
Confidence 9999999984 3568899999999999999953 34555677778888899999999 55555
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=3.3e-11 Score=101.39 Aligned_cols=218 Identities=19% Similarity=0.195 Sum_probs=114.2
Q ss_pred CCCCcEEEccCC-------ccc-ccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCccccc---ccc
Q 042366 20 PPSTEVFLVSNN-------KLS-GRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGH---IHD 88 (343)
Q Consensus 20 ~~~L~~L~L~~n-------~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~---~~~ 88 (343)
++.|..|..++. +|. ..+|-.+.-+++|+.+.++++.-. .+- .+....+-|+++...+..+... .|.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~-~~~~~kptl~t~~v~~s~~~~~~~l~pe 258 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIV-DIELLKPTLQTICVHNTTIQDVPSLLPE 258 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-hee-ceeecCchhheeeeecccccccccccch
Confidence 667777777653 121 234444455677888888877543 222 2333445688888877766532 121
Q ss_pred cccccEEEeccC---CCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCcc
Q 042366 89 TFANAIVNVENN---MTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSME 165 (343)
Q Consensus 89 ~~~~~~l~l~~n---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 165 (343)
... .|.... ...+...........|+++++++|.++... ... .-.|.++.|++++|.+... .. ...
T Consensus 259 ~~~---~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD-ESv--KL~Pkir~L~lS~N~i~~v-~n--La~-- 327 (490)
T KOG1259|consen 259 TIL---ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID-ESV--KLAPKLRRLILSQNRIRTV-QN--LAE-- 327 (490)
T ss_pred hhh---cCccCCCCCccCCceEEecchHhhhhhccccccchhhhh-hhh--hhccceeEEeccccceeee-hh--hhh--
Confidence 111 111111 111111112222355777888888776422 222 4467788888888877622 11 222
Q ss_pred ccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCC
Q 042366 166 AMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE 245 (343)
Q Consensus 166 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 245 (343)
+++|+.|||++|.++ .+..|=.++.+.++|.|+.|.|.+. ..+..+-+|.
T Consensus 328 ---------------------------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLv 377 (490)
T KOG1259|consen 328 ---------------------------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLV 377 (490)
T ss_pred ---------------------------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhhe
Confidence 445566666666655 3444444555666666666665522 2234455666
Q ss_pred eEeCCCCcCccc-cchhhhcCCcCCeEeccCCcCee
Q 042366 246 SLDLSFNKLDGR-IPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 246 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
.||+++|+|... ....++.+|-|+.+.|.+|.+.+
T Consensus 378 nLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 378 NLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 666666666532 12345556666666666666643
No 35
>PLN03150 hypothetical protein; Provisional
Probab=99.04 E-value=4.7e-10 Score=108.53 Aligned_cols=91 Identities=37% Similarity=0.562 Sum_probs=82.4
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcC-CcCCeE
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALALL 271 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L 271 (343)
+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|+.++.+++|+.|+|++|.+++.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999988764 467889
Q ss_pred eccCCcCeecCC
Q 042366 272 NLSHSRLWGRIP 283 (343)
Q Consensus 272 ~l~~N~l~~~~p 283 (343)
++.+|...+..|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999998656554
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=6.2e-12 Score=107.62 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=81.7
Q ss_pred HhccCeeeccCCcccc----cCcccccCCCCCCEEEccCCcCccC----CCccccccCCCCeEeCCCCcCccccchhh--
Q 042366 193 LVMFRAMDFSSNRFHG----EIPEVLGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQL-- 262 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-- 262 (343)
.+.|+++.+++|.+.. .....|.++++|+.|||..|-++.. +...++.+++|+.|++++|.++..-..+|
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 5788999999998863 2345788999999999999998742 34556778899999999999986543333
Q ss_pred ---hcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCC
Q 042366 263 ---LSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLT 308 (343)
Q Consensus 263 ---~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~ 308 (343)
...++|+.+.+.+|.|+..-.. .........+-+..+.+.||-+.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~-~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAAL-ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHH-HHHHHHhcchhhHHhcCCccccc
Confidence 3578999999999999532111 11112233444556677887773
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=1.8e-10 Score=76.00 Aligned_cols=61 Identities=36% Similarity=0.543 Sum_probs=57.0
Q ss_pred hccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcC
Q 042366 194 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 254 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (343)
++|++|++++|.++...+.+|..+++|++|++++|.++...++.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999988899999999999999999986
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.2e-10 Score=91.71 Aligned_cols=107 Identities=27% Similarity=0.414 Sum_probs=31.4
Q ss_pred HhccCeeeccCCcccccCccccc-CCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhh-hcCCcCCe
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLG-NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL-LSVTALAL 270 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 270 (343)
+.++++|+|++|.|+.+ +.+. .+.+|+.|+|++|.|+.. +.+..+++|++|++++|+|+.. ...+ ..+++|+.
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 34567777777777632 2343 456777777777777733 2456677777777777777743 3333 35677777
Q ss_pred EeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCC
Q 042366 271 LNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLT 308 (343)
Q Consensus 271 L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~ 308 (343)
|++++|+|... ..+..+..+..+..+.+.|||+.
T Consensus 93 L~L~~N~I~~l----~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDL----NELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SC----CCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCCh----HHhHHHHcCCCcceeeccCCccc
Confidence 77777777431 22333344444455567777763
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=8.5e-11 Score=98.95 Aligned_cols=178 Identities=21% Similarity=0.201 Sum_probs=116.0
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeeccccccc-----------------------ccCCchhhcCccCccEEE
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLS-----------------------GTIPPCLGNFSTELITLH 76 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~-----------------------~~~p~~~~~~~~~L~~L~ 76 (343)
+++|.++.++.+.-..+ .+....=+.|+++..++..+. |.+-..+-.+. -|++||
T Consensus 213 f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq-~LtelD 290 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ-ELTELD 290 (490)
T ss_pred hhhhheeeeeccchhhe-eceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh-hhhhcc
Confidence 67777777776644311 111222245666666655444 11111222232 466666
Q ss_pred cccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccC
Q 042366 77 LKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFL 156 (343)
Q Consensus 77 l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 156 (343)
+++|.|+ .+..++.-+|.++.|+++.|.+..... . ..+++|++||+++|.++...
T Consensus 291 LS~N~I~---------------------~iDESvKL~Pkir~L~lS~N~i~~v~n--L--a~L~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 291 LSGNLIT---------------------QIDESVKLAPKLRRLILSQNRIRTVQN--L--AELPQLQLLDLSGNLLAECV 345 (490)
T ss_pred ccccchh---------------------hhhhhhhhccceeEEeccccceeeehh--h--hhcccceEeecccchhHhhh
Confidence 6666655 334455667999999999999875332 3 55889999999999887321
Q ss_pred CcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCC-C
Q 042366 157 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI-P 235 (343)
Q Consensus 157 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~ 235 (343)
++- ..+.++++|.|++|.+.. -..+.++.+|+.||+++|+|.... .
T Consensus 346 --Gwh-----------------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 346 --GWH-----------------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred --hhH-----------------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHh
Confidence 111 115678889999998852 345778889999999999987422 2
Q ss_pred ccccccCCCCeEeCCCCcCccc
Q 042366 236 VSFENMTALESLDLSFNKLDGR 257 (343)
Q Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~ 257 (343)
..++.++.|+++.|.+|.+.+.
T Consensus 393 ~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccccccHHHHHhhcCCCcccc
Confidence 4578899999999999999853
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=1.7e-09 Score=107.16 Aligned_cols=108 Identities=25% Similarity=0.342 Sum_probs=80.0
Q ss_pred CCCCcEEEccCCc--ccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEe
Q 042366 20 PPSTEVFLVSNNK--LSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNV 97 (343)
Q Consensus 20 ~~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l 97 (343)
++.|++|-+.+|. +.....+.|..++.|+.|||++|.-.+.+|+.+..+. +||+|+++++.+.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-~LryL~L~~t~I~-------------- 608 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-HLRYLDLSDTGIS-------------- 608 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-hhhcccccCCCcc--------------
Confidence 5679999998886 5555666688899999999998855558999999887 8999999999887
Q ss_pred ccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCc
Q 042366 98 ENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNE 151 (343)
Q Consensus 98 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 151 (343)
.+|..++.+..|.+|++..+......+... ..+++||+|.+....
T Consensus 609 -------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 609 -------HLPSGLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPRSA 653 (889)
T ss_pred -------ccchHHHHHHhhheeccccccccccccchh--hhcccccEEEeeccc
Confidence 666777777777777777765443332222 447777777776543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=2e-10 Score=106.24 Aligned_cols=57 Identities=39% Similarity=0.502 Sum_probs=25.1
Q ss_pred cCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCc
Q 042366 196 FRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 255 (343)
Q Consensus 196 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (343)
|+.+++++|++. ..+..+..+..+..|++..|++... ..+.....+..+....|.+.
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 455555555554 2223344445555555555554422 11223344444444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=4.2e-10 Score=104.05 Aligned_cols=210 Identities=28% Similarity=0.296 Sum_probs=120.1
Q ss_pred EEEccCCcccc--cCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCc
Q 042366 4 TLDLRNNRIQG--SILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 81 (343)
Q Consensus 4 ~L~ls~n~l~~--~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~ 81 (343)
.+.+..|.+.. .....+.+++.+++.+|+|..+. ..+..+.+|++|+|++|.|+ .+. .+..+. .|+.|++++|.
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~-~L~~L~l~~N~ 151 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKIT-KLE-GLSTLT-LLKELNLSGNL 151 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccc-ccc-chhhcc-chhhheeccCc
Confidence 34455555543 22445777777777777777432 22666777777777777776 332 344443 57777777777
Q ss_pred ccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccc
Q 042366 82 LEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 161 (343)
Q Consensus 82 l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 161 (343)
|+.. ..+..+++|+.+++++|.+...... . ...+.+++.+++.+|.+......
T Consensus 152 i~~~----------------------~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~--- 204 (414)
T KOG0531|consen 152 ISDI----------------------SGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGL--- 204 (414)
T ss_pred chhc----------------------cCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccch---
Confidence 7632 2234467788888888877653331 0 14567777888888777522111
Q ss_pred cCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCC--CCCEEEccCCcCccCCCcccc
Q 042366 162 PSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFK--SLKVLNLSHNSLTGNIPVSFE 239 (343)
Q Consensus 162 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~ 239 (343)
.. ...+..+++..|.++..-+ +..+. +|+.+++++|.+. ..+..+.
T Consensus 205 ---~~--------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~ 252 (414)
T KOG0531|consen 205 ---DL--------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLE 252 (414)
T ss_pred ---HH--------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-ccccccc
Confidence 10 2333334566666652221 11222 3777777777777 3334455
Q ss_pred ccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcC
Q 042366 240 NMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 278 (343)
.+..+..|++.+|++... ..+.....+..+....|.+
T Consensus 253 ~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 253 NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred ccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence 667777777777777642 2233444455555555554
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-08 Score=101.71 Aligned_cols=102 Identities=34% Similarity=0.489 Sum_probs=80.4
Q ss_pred ccEEEccCCc--c---cccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEE
Q 042366 2 ITTLDLRNNR--I---QGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLH 76 (343)
Q Consensus 2 L~~L~ls~n~--l---~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~ 76 (343)
|+.|-+..|. + ....|..++.|++|||++|.--+.+|+.++.+-+|++|+|+++.++ .+|.++..+. +|.+|+
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk-~L~~Ln 624 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK-KLIYLN 624 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH-hhheec
Confidence 4555555553 2 2344778999999999998777789999999999999999999999 9999999997 899999
Q ss_pred cccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCc
Q 042366 77 LKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNR 125 (343)
Q Consensus 77 l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 125 (343)
+..+.-.. ..|.....+.+|++|.+..-.
T Consensus 625 l~~~~~l~--------------------~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLE--------------------SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccc--------------------cccchhhhcccccEEEeeccc
Confidence 99886442 223444557888888876554
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.52 E-value=2.5e-09 Score=89.01 Aligned_cols=247 Identities=21% Similarity=0.268 Sum_probs=145.1
Q ss_pred ccEEEccCCcccc-------cCCCCCCCCcEEEccCCccc---c-------cCCccccCCCccCeeecccccccccCCch
Q 042366 2 ITTLDLRNNRIQG-------SILVPPPSTEVFLVSNNKLS---G-------RIPPSICSLSFLQYLSLSDNNLSGTIPPC 64 (343)
Q Consensus 2 L~~L~ls~n~l~~-------~~~~~~~~L~~L~L~~n~i~---~-------~~~~~~~~l~~L~~L~L~~n~i~~~~p~~ 64 (343)
++.+|||+|.|.. .....-.+|++..++.--.. . .+..++.+|++|+..+||+|.+....|..
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 5788999998863 23334677777777654221 1 22345678899999999999988666665
Q ss_pred hhcC---ccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCC--CCCccCC
Q 042366 65 LGNF---STELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCN--SNITFPF 139 (343)
Q Consensus 65 ~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~ 139 (343)
+..+ ...|++|.+++|.+.......++.....|..|. -.+.-|.|+.++..+|++..-... ...+...
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK-------Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK-------KAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh-------hhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 4433 237999999999876544433332111111111 123457788888888887531110 0011223
Q ss_pred CCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccc----cCccccc
Q 042366 140 QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHG----EIPEVLG 215 (343)
Q Consensus 140 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~l~ 215 (343)
.+|+.+.+.+|.|. |.++ +.|..+. .-.+.+|+.||+..|-++- .+...++
T Consensus 185 ~~lk~vki~qNgIr---pegv----~~L~~~g------------------l~y~~~LevLDlqDNtft~~gS~~La~al~ 239 (388)
T COG5238 185 ENLKEVKIQQNGIR---PEGV----TMLAFLG------------------LFYSHSLEVLDLQDNTFTLEGSRYLADALC 239 (388)
T ss_pred cCceeEEeeecCcC---cchh----HHHHHHH------------------HHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence 57888888888775 2221 1111111 1125677888888887762 2344555
Q ss_pred CCCCCCEEEccCCcCccCCCccc------cccCCCCeEeCCCCcCcccc------chhh-hcCCcCCeEeccCCcCee
Q 042366 216 NFKSLKVLNLSHNSLTGNIPVSF------ENMTALESLDLSFNKLDGRI------PEQL-LSVTALALLNLSHSRLWG 280 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~------~~~~-~~l~~L~~L~l~~N~l~~ 280 (343)
..+.|++|.+..|-++......+ ...++|..|-..+|.+.+.. +... ..++-|..|-+.+|+|..
T Consensus 240 ~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 240 EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 56677888888877664333221 12467778888888765431 1111 246677777788888853
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.6e-09 Score=91.31 Aligned_cols=41 Identities=15% Similarity=-0.151 Sum_probs=19.5
Q ss_pred CCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 113 LPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 113 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
-.+|+.|+++.+.--.......+..++..|..|++++|.+.
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 34566666655432111122222345556666666666554
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=8.1e-08 Score=81.13 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=34.6
Q ss_pred HhccCeeeccCCccccc-CcccccCCCCCCEEEccCCcCccC-CCccccccCCCCeEeCCCCcCcc
Q 042366 193 LVMFRAMDFSSNRFHGE-IPEVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDG 256 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 256 (343)
++++..+.+..|.+... ..+.+..++.+.-|+|+.|+|.+- ..+.+.+++.|.-|.++++.+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 55555555655555422 223344455556666666666531 22345566666666666666654
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=3.3e-08 Score=82.43 Aligned_cols=225 Identities=18% Similarity=0.084 Sum_probs=122.7
Q ss_pred CCCccCeeecccccccccCCchhhcCc---cCccEEEcccCcccc----cccccccccEEEeccCCCCCCcCccccCCCC
Q 042366 43 SLSFLQYLSLSDNNLSGTIPPCLGNFS---TELITLHLKNNSLEG----HIHDTFANAIVNVENNMTSDSFPCWLGSLPV 115 (343)
Q Consensus 43 ~l~~L~~L~L~~n~i~~~~p~~~~~~~---~~L~~L~l~~n~l~~----~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~ 115 (343)
-+..+..++||+|.|.......++... .+|+..+++.- +++ ..+.++. .+-.++.+||.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~-------------~Ll~aLlkcp~ 93 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLV-------------MLLKALLKCPR 93 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHH-------------HHHHHHhcCCc
Confidence 356677777777777643333333322 24555555432 121 1111111 12233445677
Q ss_pred cCEEEecCCcccccCCCCCC--ccCCCCCcEEEeeCCcccccCCcccccC------------ccccccccccCcccccCC
Q 042366 116 LKILVLRSNRFDGPLCNSNI--TFPFQALRIIDLSHNEFTGFLPRRIFPS------------MEAMKNVDEQGRLEYMGG 181 (343)
Q Consensus 116 L~~L~l~~n~l~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~------------l~~L~~l~~~~~~~~~~~ 181 (343)
|+.+++++|.+...++.... ..+-..|.+|.+.+|.+.......+... -+.|+.+.+..|...-..
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 77777777777654443321 1345567777777776642222221111 223333333333211111
Q ss_pred cccCcchhHHHHhccCeeeccCCcccccC-----cccccCCCCCCEEEccCCcCccC----CCccccccCCCCeEeCCCC
Q 042366 182 AFYDESITQKILVMFRAMDFSSNRFHGEI-----PEVLGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFN 252 (343)
Q Consensus 182 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n 252 (343)
..++ .........|+++.+.+|.|.... -..+..+.+|+.|||..|.++-. +...+...+.|+.|.+.+|
T Consensus 174 ~~~~-a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 174 KELS-AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHH-HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 1000 111222468899999999987431 12345678999999999988732 2233445677999999999
Q ss_pred cCccccchhh------hcCCcCCeEeccCCcCeecC
Q 042366 253 KLDGRIPEQL------LSVTALALLNLSHSRLWGRI 282 (343)
Q Consensus 253 ~l~~~~~~~~------~~l~~L~~L~l~~N~l~~~~ 282 (343)
-++..-...+ ...++|..|...+|.+.+-+
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence 8875433322 24678899999999875433
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.30 E-value=1.2e-06 Score=70.20 Aligned_cols=109 Identities=27% Similarity=0.305 Sum_probs=71.1
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
......+||++|.+... ..|.+++.|..|.|++|.|+ .+...+....++|+.|.+.+|.|....
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~------------- 104 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELG------------- 104 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhh-------------
Confidence 44566777777776622 35677777777777777777 665666666666777777777765321
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCccccc-CCCCCCccCCCCCcEEEeeCC
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDGP-LCNSNITFPFQALRIIDLSHN 150 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~l~~n 150 (343)
+.. -++.+|.|++|.+-+|++... -...+....+++|+.||+..-
T Consensus 105 ----dl~--pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 105 ----DLD--PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ----hcc--hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 111 245578888888888887752 223344466788888888654
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6.1e-09 Score=87.79 Aligned_cols=84 Identities=24% Similarity=0.145 Sum_probs=57.8
Q ss_pred ccEEEccCCcccc----cCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccc-cccccCCchhhcCccCccEEE
Q 042366 2 ITTLDLRNNRIQG----SILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDN-NLSGTIPPCLGNFSTELITLH 76 (343)
Q Consensus 2 L~~L~ls~n~l~~----~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~p~~~~~~~~~L~~L~ 76 (343)
|++||||...|+. .+...+..|+.|.|.++++...+...+++-.+|+.|+|+++ .++...-.-++...+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5678888888764 33445788888888888888777777888888888888876 444211122333344788888
Q ss_pred cccCccccc
Q 042366 77 LKNNSLEGH 85 (343)
Q Consensus 77 l~~n~l~~~ 85 (343)
+++|.+...
T Consensus 267 lsWc~l~~~ 275 (419)
T KOG2120|consen 267 LSWCFLFTE 275 (419)
T ss_pred chHhhccch
Confidence 888877643
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=3.8e-08 Score=92.31 Aligned_cols=126 Identities=23% Similarity=0.208 Sum_probs=79.4
Q ss_pred CCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccC
Q 042366 21 PSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENN 100 (343)
Q Consensus 21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n 100 (343)
-.|.+.+.++|.+. .+-.++.-++.|+.|+|++|+++ .+. .+..+. +|++||+++|.+..
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~-~LkhLDlsyN~L~~---------------- 223 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLP-KLKHLDLSYNCLRH---------------- 223 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcc-cccccccccchhcc----------------
Confidence 34567777778777 45566777888899999999887 443 566665 89999999998872
Q ss_pred CCCCCcCcc-ccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcc
Q 042366 101 MTSDSFPCW-LGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRL 176 (343)
Q Consensus 101 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~ 176 (343)
+|.. ..++ .|+.|.+.+|.++... .+ .++.+|+.||+++|-+.+.---..+..+..|+.|.+.||.
T Consensus 224 -----vp~l~~~gc-~L~~L~lrnN~l~tL~--gi--e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 224 -----VPQLSMVGC-KLQLLNLRNNALTTLR--GI--ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -----ccccchhhh-hheeeeecccHHHhhh--hH--HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2321 1122 3777777777665321 11 4566777777777766533222234445555555555554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=1.3e-07 Score=70.93 Aligned_cols=118 Identities=25% Similarity=0.346 Sum_probs=87.0
Q ss_pred HhccCeeeccCCcccccCcccc-cCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeE
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVL-GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 271 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (343)
...|+..+|++|.+. .+|..| ..++.+++|+|++|.|+ ..|+.+..++.|+.|+++.|.+. ..|+.+..+.++-.|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 456777899999998 455444 56778999999999999 56666999999999999999998 678888888999999
Q ss_pred eccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 042366 272 NLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGLPKA 319 (343)
Q Consensus 272 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~~~~ 319 (343)
+..+|.+.. +|...... +..+-+.+..+||.-.|..+.-...
T Consensus 129 ds~~na~~e-id~dl~~s-----~~~al~~lgnepl~~~~~~klqa~k 170 (177)
T KOG4579|consen 129 DSPENARAE-IDVDLFYS-----SLPALIKLGNEPLGDETKKKLQALK 170 (177)
T ss_pred cCCCCcccc-CcHHHhcc-----ccHHHHHhcCCcccccCcccccccC
Confidence 999998832 33221111 2233345677899888887654443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=1.7e-06 Score=52.33 Aligned_cols=37 Identities=35% Similarity=0.582 Sum_probs=23.8
Q ss_pred CCCcEEEccCCcccccCCccccCCCccCeeeccccccc
Q 042366 21 PSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLS 58 (343)
Q Consensus 21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 58 (343)
++|++|++++|+|+. +|..|++|++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 356777777777773 3445677777777777777776
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2.6e-07 Score=78.19 Aligned_cols=206 Identities=19% Similarity=0.164 Sum_probs=106.4
Q ss_pred CCCCcEEEccCCcccc--cCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEe
Q 042366 20 PPSTEVFLVSNNKLSG--RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNV 97 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l 97 (343)
+..++.+||.+|.|+. .+...+.+|++|+.|+|+.|.+...+..--... .+|+.|.+.+..+.-.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~-~nl~~lVLNgT~L~w~------------ 136 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL-KNLRVLVLNGTGLSWT------------ 136 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc-cceEEEEEcCCCCChh------------
Confidence 8889999999999983 344456789999999999998873332211233 3889998888876521
Q ss_pred ccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccC-CCCCcEEEeeCCcccccCC----cccccCccccccccc
Q 042366 98 ENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFP-FQALRIIDLSHNEFTGFLP----RRIFPSMEAMKNVDE 172 (343)
Q Consensus 98 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~l~~ 172 (343)
.....+..+|.++.|.++.|.+...-.+.-.... -+.++++.+-.|....... ...|...++ +-+
T Consensus 137 -------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s---v~v 206 (418)
T KOG2982|consen 137 -------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS---VFV 206 (418)
T ss_pred -------hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh---eee
Confidence 1122344567777777777743321111000011 1233444443332210000 001111111 111
Q ss_pred cCccc-ccCCcccCcchhHHHHhccCeeeccCCccccc-CcccccCCCCCCEEEccCCcCccCCCc------cccccCCC
Q 042366 173 QGRLE-YMGGAFYDESITQKILVMFRAMDFSSNRFHGE-IPEVLGNFKSLKVLNLSHNSLTGNIPV------SFENMTAL 244 (343)
Q Consensus 173 ~~~~~-~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L 244 (343)
..+.. ...+. -....++.+--|.|+.+++..- .-+.+.+++.|..|.++++.+.+.... .++.++++
T Consensus 207 ~e~PlK~~s~e-----k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v 281 (418)
T KOG2982|consen 207 CEGPLKTESSE-----KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKV 281 (418)
T ss_pred ecCcccchhhc-----ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccce
Confidence 11100 00000 0001144555677888877532 235677888888888888877643221 13456666
Q ss_pred CeEeCCCCcCc
Q 042366 245 ESLDLSFNKLD 255 (343)
Q Consensus 245 ~~L~L~~n~l~ 255 (343)
+.|+=+ +|+
T Consensus 282 ~vLNGs--kIs 290 (418)
T KOG2982|consen 282 QVLNGS--KIS 290 (418)
T ss_pred EEecCc--ccc
Confidence 665533 554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=9.5e-08 Score=71.62 Aligned_cols=138 Identities=22% Similarity=0.242 Sum_probs=91.8
Q ss_pred CCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHH
Q 042366 114 PVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKIL 193 (343)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (343)
..+..++++.|++...............|...++++|.+. ..|..+... +
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~k-----------------------------f 76 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIK-----------------------------F 76 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhc-----------------------------c
Confidence 4466677777765421111111233455677788888776 455443221 5
Q ss_pred hccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEec
Q 042366 194 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 273 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 273 (343)
+..++|+++.|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+..+.-+ +..-...-..++
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d-l~~s~~~al~~l 153 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD-LFYSSLPALIKL 153 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH-HhccccHHHHHh
Confidence 56788899999998 77888999999999999999998 6777777799999999999998754333 322222334455
Q ss_pred cCCcCeecCCC
Q 042366 274 SHSRLWGRIPQ 284 (343)
Q Consensus 274 ~~N~l~~~~p~ 284 (343)
.++.+.+-.+.
T Consensus 154 gnepl~~~~~~ 164 (177)
T KOG4579|consen 154 GNEPLGDETKK 164 (177)
T ss_pred cCCcccccCcc
Confidence 67777655544
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=1.9e-05 Score=71.28 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=31.4
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccc-cccccCCchhhcCccCccEEEcccC
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDN-NLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
+.+++.|++++|.++. +|. + -.+|++|.++++ .++ .+|..+ ..+|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLt-sLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLT-TLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcc-cCCchh---hhhhhheEccCc
Confidence 5667777777776663 331 1 125777777764 443 555433 236777777776
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=2.4e-05 Score=70.65 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=74.3
Q ss_pred ccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEE
Q 042366 41 ICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILV 120 (343)
Q Consensus 41 ~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~ 120 (343)
+..+.+++.|++++|.++ .+| .+..+|++|.+++|.--. .+|..+ .++|+.|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLt--------------------sLP~~L--P~nLe~L~ 100 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLT--------------------TLPGSI--PEGLEKLT 100 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcc--------------------cCCchh--hhhhhheE
Confidence 344688999999999888 777 345579999998854321 333333 25788888
Q ss_pred ecCCcccccCCCCCCccCCCCCcEEEeeCCcccc--cCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCe
Q 042366 121 LRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTG--FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRA 198 (343)
Q Consensus 121 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 198 (343)
+++|..... -..+|+.|+++.+.... .+| ++|+.|.+....... ....+...+++|++
T Consensus 101 Ls~Cs~L~s--------LP~sLe~L~L~~n~~~~L~~LP-------ssLk~L~I~~~n~~~-----~~~lp~~LPsSLk~ 160 (426)
T PRK15386 101 VCHCPEISG--------LPESVRSLEIKGSATDSIKNVP-------NGLTSLSINSYNPEN-----QARIDNLISPSLKT 160 (426)
T ss_pred ccCcccccc--------cccccceEEeCCCCCcccccCc-------chHhheecccccccc-----ccccccccCCcccE
Confidence 887732211 12457777776554321 122 223333332110000 00000011456777
Q ss_pred eeccCCcccccCcccccCCCCCCEEEccCC
Q 042366 199 MDFSSNRFHGEIPEVLGNFKSLKVLNLSHN 228 (343)
Q Consensus 199 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 228 (343)
|++++|... ..|..+. .+|+.|+++.+
T Consensus 161 L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 161 LSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 777766654 3444443 46777776655
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=6.1e-06 Score=49.91 Aligned_cols=36 Identities=39% Similarity=0.564 Sum_probs=17.8
Q ss_pred CCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCe
Q 042366 243 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLW 279 (343)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 279 (343)
+|++|++++|+|++ ++..+..+++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555553 3334555555555555555553
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=2.2e-05 Score=63.05 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=17.3
Q ss_pred CCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 113 LPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 113 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
++.|.+|.+.+|+++...+.-. ..+++|+.|.+.+|++.
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~--~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLD--TFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccccceEEecCCcceeeccchh--hhccccceEEecCcchh
Confidence 4445555555554443333222 22444555555555443
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.82 E-value=5e-07 Score=79.78 Aligned_cols=273 Identities=17% Similarity=0.138 Sum_probs=143.5
Q ss_pred ccEEEccCCcccc-----cCCCCCCCCcEEEccCCc-ccccCCccc-cCCCccCeeecccc-cccccCCchhhcCccCcc
Q 042366 2 ITTLDLRNNRIQG-----SILVPPPSTEVFLVSNNK-LSGRIPPSI-CSLSFLQYLSLSDN-NLSGTIPPCLGNFSTELI 73 (343)
Q Consensus 2 L~~L~ls~n~l~~-----~~~~~~~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~p~~~~~~~~~L~ 73 (343)
|+.|.+.++.=.+ .....+++++.|.+.++. ++...-..+ ..+++|++|+|..+ .+++..-..+....++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 4566666665332 223338889998888874 332211122 45788999999984 566444444566667899
Q ss_pred EEEcccCc-ccccccccccc-----cEEEeccCCCCCCcC--ccccCCCCcCEEEecCCc-ccccCCCCCCccCCCCCcE
Q 042366 74 TLHLKNNS-LEGHIHDTFAN-----AIVNVENNMTSDSFP--CWLGSLPVLKILVLRSNR-FDGPLCNSNITFPFQALRI 144 (343)
Q Consensus 74 ~L~l~~n~-l~~~~~~~~~~-----~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~ 144 (343)
+|+++++. |++-....+.+ +.+.+.++.-.+... ..=+.++.+.++++..+. +++.. .......+..|+.
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED-LWLIACGCHALQV 298 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH-HHHHhhhhhHhhh
Confidence 99999985 55422222221 111111111100000 000122234444433332 22111 0111134566777
Q ss_pred EEeeCCcc-cccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccc--cCcccccCCCCCC
Q 042366 145 IDLSHNEF-TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHG--EIPEVLGNFKSLK 221 (343)
Q Consensus 145 L~l~~n~l-~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~ 221 (343)
|+.+++.- +...-..+.....+|+.+.+.++.......+ .......+.|+.+++..+.... .+...-.+++.|+
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f---t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF---TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh---hhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 77766432 2111122344456666666655432111110 0111226788888888877542 2333335688999
Q ss_pred EEEccCCcC-ccC----CCccccccCCCCeEeCCCCcCc-cccchhhhcCCcCCeEeccCCcC
Q 042366 222 VLNLSHNSL-TGN----IPVSFENMTALESLDLSFNKLD-GRIPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 222 ~L~Ls~n~l-~~~----~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l 278 (343)
.+.|+++.. ++. ....-..+..++.+-|+++... +.....+..+++|+.+++-..+-
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 999998854 322 1222345678888999988654 33455667788999988877654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=4.8e-06 Score=81.02 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=94.0
Q ss_pred CccEEEccCCcccc-----cCCCCCCCCcEEEccCCccccc-CCccccCCCccCeeecccccccccCCchhhcCccCccE
Q 042366 1 NITTLDLRNNRIQG-----SILVPPPSTEVFLVSNNKLSGR-IPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELIT 74 (343)
Q Consensus 1 ~L~~L~ls~n~l~~-----~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~ 74 (343)
+|++||+++.+.-. .+-.-+|+|+.|.+++-.+... .......+++|..||+|+++++ .+ .++.++. +|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~Lk-nLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLK-NLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccc-cHHH
Confidence 57889998876432 2223399999999998877632 1233567899999999999998 55 5677775 8999
Q ss_pred EEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccC------CCCCCccCCCCCcEEEee
Q 042366 75 LHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPL------CNSNITFPFQALRIIDLS 148 (343)
Q Consensus 75 L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~~~L~~L~l~ 148 (343)
|.+.+=.+.... . -..+-.+++|+.||+|+....... .... ..+|+||.||.|
T Consensus 200 L~mrnLe~e~~~------------------~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~--~~LpeLrfLDcS 258 (699)
T KOG3665|consen 200 LSMRNLEFESYQ------------------D-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG--MVLPELRFLDCS 258 (699)
T ss_pred HhccCCCCCchh------------------h-HHHHhcccCCCeeeccccccccchHHHHHHHHhc--ccCccccEEecC
Confidence 988876665210 0 112345899999999987655321 1122 348899999999
Q ss_pred CCcccccCCcccc
Q 042366 149 HNEFTGFLPRRIF 161 (343)
Q Consensus 149 ~n~l~~~~~~~~~ 161 (343)
+..+....-..+.
T Consensus 259 gTdi~~~~le~ll 271 (699)
T KOG3665|consen 259 GTDINEEILEELL 271 (699)
T ss_pred CcchhHHHHHHHH
Confidence 9888755444433
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=3.2e-06 Score=71.02 Aligned_cols=101 Identities=27% Similarity=0.234 Sum_probs=76.1
Q ss_pred ccEEEccCCcccc-cCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhc--CccCccEEEcc
Q 042366 2 ITTLDLRNNRIQG-SILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGN--FSTELITLHLK 78 (343)
Q Consensus 2 L~~L~ls~n~l~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~--~~~~L~~L~l~ 78 (343)
++.|++.+|.++. .+...++.|++|.|+-|+|+... .|.++++|++|+|+.|.|. .+. .++. ..++|+.|-|.
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sld-EL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLD-ELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHH-HHHHHhcCchhhhHhhc
Confidence 5678999999986 56777999999999999999654 4899999999999999997 332 3332 23589999999
Q ss_pred cCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEe
Q 042366 79 NNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVL 121 (343)
Q Consensus 79 ~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l 121 (343)
.|.-.+..+.... ...+..+|+|+.||=
T Consensus 97 ENPCc~~ag~nYR---------------~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 97 ENPCCGEAGQNYR---------------RKVLRVLPNLKKLDN 124 (388)
T ss_pred cCCcccccchhHH---------------HHHHHHcccchhccC
Confidence 9987665443332 123556788888853
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.52 E-value=0.00043 Score=52.72 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=61.3
Q ss_pred ccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCccccccccccccc
Q 042366 14 GSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA 93 (343)
Q Consensus 14 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 93 (343)
...|..+.+|+.+.+.. .+..+...+|.++.+|+.+.+.++ +. .++...+...++|+.+.+.. .+..
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~--------- 71 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKS--------- 71 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-E---------
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccc---------
Confidence 34566677888888875 566677778888888888888875 65 66666666655788888865 3331
Q ss_pred EEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCcccc
Q 042366 94 IVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM 167 (343)
Q Consensus 94 ~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 167 (343)
.....|..+++|+.+.+..+ +.......+ ... +|+.+.+.. .+. .++...|..+++|
T Consensus 72 -----------i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f--~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 72 -----------IGDNAFSNCTNLKNIDIPSN-ITEIGSSSF--SNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp -----------E-TTTTTT-TTECEEEETTT--BEEHTTTT--TT--T--EEE-TT-B-S-S----GGG-----
T ss_pred -----------cccccccccccccccccCcc-ccEEchhhh--cCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 11234556788888888665 433223333 444 777777765 333 4555666655544
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00049 Score=52.45 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=48.1
Q ss_pred ccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcc
Q 042366 108 CWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES 187 (343)
Q Consensus 108 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 187 (343)
..|..+.+|+.+.+.. .+.......+ ..+.+|+.+.+.++ +. .++...|..+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F--~~~~~l~~i~~~~~-~~-~i~~~~F~~~~---------------------- 58 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAF--SNCTSLKSINFPNN-LT-SIGDNAFSNCK---------------------- 58 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTT--TT-TT-SEEEESST-TS-CE-TTTTTT-T----------------------
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhc--cccccccccccccc-cc-ccceeeeeccc----------------------
Confidence 3455566677776664 3333223333 45556666666553 33 34444444432
Q ss_pred hhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCc
Q 042366 188 ITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 267 (343)
Q Consensus 188 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (343)
.++.+.+.. .+.......|..++.|+.+++..+ +.......|.+. .|+.+.+.. .++.+....|.++++
T Consensus 59 -------~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 59 -------SLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp -------T-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred -------ccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 344444443 222233445555666666666554 443444556665 666666654 333344455555555
Q ss_pred C
Q 042366 268 L 268 (343)
Q Consensus 268 L 268 (343)
|
T Consensus 128 l 128 (129)
T PF13306_consen 128 L 128 (129)
T ss_dssp -
T ss_pred C
Confidence 4
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=4.4e-05 Score=74.45 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=43.6
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccC-CCccccccCCCCeEeCCCCcCcccc------chhhhcC
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDGRI------PEQLLSV 265 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l 265 (343)
+++|..||+|+.+++.. ..++.+++|+.|.+.+-.+... .-..+-++++|+.||+|..+..... -+.-..+
T Consensus 172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 55666666666666532 4455666666666665555421 1112334566666666655433211 0111235
Q ss_pred CcCCeEeccCCcC
Q 042366 266 TALALLNLSHSRL 278 (343)
Q Consensus 266 ~~L~~L~l~~N~l 278 (343)
|.|+.||.++..+
T Consensus 250 peLrfLDcSgTdi 262 (699)
T KOG3665|consen 250 PELRFLDCSGTDI 262 (699)
T ss_pred ccccEEecCCcch
Confidence 6666666666555
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00019 Score=60.08 Aligned_cols=61 Identities=30% Similarity=0.425 Sum_probs=32.2
Q ss_pred HhccCeeeccCC--cccccCcccccCCCCCCEEEccCCcCccCCCcc---ccccCCCCeEeCCCCcCc
Q 042366 193 LVMFRAMDFSSN--RFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS---FENMTALESLDLSFNKLD 255 (343)
Q Consensus 193 ~~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~ 255 (343)
+++|++|.++.| ++.+.++.....+++|+++++++|+|+. +.+ +..+.+|..|++.+|..+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 456666666666 3333344334445666666666666552 122 233445556666666554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00033 Score=58.64 Aligned_cols=41 Identities=37% Similarity=0.473 Sum_probs=17.8
Q ss_pred cCCCCCCEEEccCC--cCccCCCccccccCCCCeEeCCCCcCc
Q 042366 215 GNFKSLKVLNLSHN--SLTGNIPVSFENMTALESLDLSFNKLD 255 (343)
Q Consensus 215 ~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (343)
..+++|++|.++.| ++.+-++-....+++|++++++.|+|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34445555555555 333222222233345555555555444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=4.8e-05 Score=64.17 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=65.1
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccc-cchhhhcCCcCCeE
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR-IPEQLLSVTALALL 271 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 271 (343)
+.+++.|++-+|++.++ ....+|+.|+.|.|+-|+|+... .|..+++|++|+|..|.|.+. ....+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 56778888888888743 34457888999999999988553 367888899999999988753 23466788888888
Q ss_pred eccCCcCeecCC
Q 042366 272 NLSHSRLWGRIP 283 (343)
Q Consensus 272 ~l~~N~l~~~~p 283 (343)
-|..|.=.+..+
T Consensus 94 WL~ENPCc~~ag 105 (388)
T KOG2123|consen 94 WLDENPCCGEAG 105 (388)
T ss_pred hhccCCcccccc
Confidence 888886544433
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.72 E-value=5.2e-05 Score=70.81 Aligned_cols=191 Identities=24% Similarity=0.196 Sum_probs=105.0
Q ss_pred ccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCC--ccC-CCCCcEEEee
Q 042366 72 LITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNI--TFP-FQALRIIDLS 148 (343)
Q Consensus 72 L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~-~~~L~~L~l~ 148 (343)
+.+|.+.+|.+.......++ ..+...+.|+.|++++|.+.+....... ... -..+++|++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~----------------~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~ 152 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELA----------------QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELV 152 (478)
T ss_pred HHHhhhhhCccccchHHHHH----------------HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhh
Confidence 66777777777654333222 3445567777777777776632111100 011 1345666676
Q ss_pred CCcccccC----CcccccCccccccccccCcccccCCcccCcchhHH---HHhccCeeeccCCccccc----CcccccCC
Q 042366 149 HNEFTGFL----PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQK---ILVMFRAMDFSSNRFHGE----IPEVLGNF 217 (343)
Q Consensus 149 ~n~l~~~~----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~----~~~~l~~l 217 (343)
.|.++... ... +...+.++.++++.|.....+.......... ....+++|.+++|.++.. ....+...
T Consensus 153 ~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~ 231 (478)
T KOG4308|consen 153 SCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG 231 (478)
T ss_pred cccccccchHHHHHH-HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc
Confidence 66665332 122 2225566666666554332221111111111 255777888888877632 12334445
Q ss_pred CC-CCEEEccCCcCccCC----Ccccccc-CCCCeEeCCCCcCccc----cchhhhcCCcCCeEeccCCcCe
Q 042366 218 KS-LKVLNLSHNSLTGNI----PVSFENM-TALESLDLSFNKLDGR----IPEQLLSVTALALLNLSHSRLW 279 (343)
Q Consensus 218 ~~-L~~L~Ls~n~l~~~~----~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 279 (343)
++ +.++++..|.+.+.. ...+..+ .++++++++.|.|++. ....+..++.++.+.+.+|.+.
T Consensus 232 ~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 232 ESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred chhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 55 666888888876542 2233444 5678888888888764 3344556677888888888774
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.0043 Score=31.16 Aligned_cols=17 Identities=59% Similarity=0.999 Sum_probs=7.9
Q ss_pred cCeeecccccccccCCch
Q 042366 47 LQYLSLSDNNLSGTIPPC 64 (343)
Q Consensus 47 L~~L~L~~n~i~~~~p~~ 64 (343)
|++|+|++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444445555444 44443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.53 E-value=0.0052 Score=30.82 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=12.7
Q ss_pred CCcEEEccCCcccccCCccccC
Q 042366 22 STEVFLVSNNKLSGRIPPSICS 43 (343)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~ 43 (343)
+|++|+|++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3666777777666 44544554
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.32 E-value=3.7e-05 Score=71.74 Aligned_cols=115 Identities=25% Similarity=0.187 Sum_probs=61.3
Q ss_pred CcEEEccCCccccc----CCccccCCCccCeeecccccccccCCchhhc----CccCccEEEcccCcccccccccccccE
Q 042366 23 TEVFLVSNNKLSGR----IPPSICSLSFLQYLSLSDNNLSGTIPPCLGN----FSTELITLHLKNNSLEGHIHDTFANAI 94 (343)
Q Consensus 23 L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~~~ 94 (343)
+..++|.+|.+... +..++..+..|+.|++++|.+.+.--..+.. ..+.+++|.+..|.++......
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~----- 163 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP----- 163 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH-----
Confidence 66777777777642 3344556677777778777776332222221 1134666677777666443322
Q ss_pred EEeccCCCCCCcCccccCCCCcCEEEecCCcccccC----CCCCC--ccCCCCCcEEEeeCCccc
Q 042366 95 VNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPL----CNSNI--TFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 95 l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~--~~~~~~L~~L~l~~n~l~ 153 (343)
+...+.....++.++++.|.+.... +.... .....++++|.+.+|.++
T Consensus 164 -----------l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 164 -----------LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred -----------HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 2233334566677777777664210 11110 023455667777666654
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.23 E-value=0.00092 Score=59.67 Aligned_cols=267 Identities=15% Similarity=0.054 Sum_probs=150.4
Q ss_pred CccEEEccCCc-ccccC----CCCCCCCcEEEccCC-cccccCCc-cccCCCccCeeecccc-cccccCCchhhcCccCc
Q 042366 1 NITTLDLRNNR-IQGSI----LVPPPSTEVFLVSNN-KLSGRIPP-SICSLSFLQYLSLSDN-NLSGTIPPCLGNFSTEL 72 (343)
Q Consensus 1 ~L~~L~ls~n~-l~~~~----~~~~~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~i~~~~p~~~~~~~~~L 72 (343)
++++|++.++. ++... -..++.|+.++|..+ .++...-. .-.++++|++|+++.+ .|++.--..+.+..+.+
T Consensus 165 nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l 244 (483)
T KOG4341|consen 165 NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKEL 244 (483)
T ss_pred chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhh
Confidence 35566666665 33322 223888888888883 55533222 3456888999998877 44432223445555556
Q ss_pred cEEEcccCcccccccccccc--------cEEEeccCCC-CCCc-CccccCCCCcCEEEecCCcccccCCCCCCccCCCCC
Q 042366 73 ITLHLKNNSLEGHIHDTFAN--------AIVNVENNMT-SDSF-PCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQAL 142 (343)
Q Consensus 73 ~~L~l~~n~l~~~~~~~~~~--------~~l~l~~n~~-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 142 (343)
+.+...+|.=.+ -.++.. ..+++..+.. ++.- ...-..+..|+.|..+++...+..+........++|
T Consensus 245 ~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 245 EKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred hhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 666666553111 111111 3444445432 2211 112234677888888877543322222222456888
Q ss_pred cEEEeeCCcc-cccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccC-----cccccC
Q 042366 143 RIIDLSHNEF-TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEI-----PEVLGN 216 (343)
Q Consensus 143 ~~L~l~~n~l-~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~ 216 (343)
+.+.++.++- +......+...+..|+.+++.+......+.+... ...++.|+.|.++.|...... ...-..
T Consensus 323 ~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl---s~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 323 QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL---SRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh---ccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 8888888763 2122223344567777777766544333322111 122788999999988754221 223345
Q ss_pred CCCCCEEEccCCcC-ccCCCccccccCCCCeEeCCCCcCccc--cchhhhcCCcCCeEe
Q 042366 217 FKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFNKLDGR--IPEQLLSVTALALLN 272 (343)
Q Consensus 217 l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ 272 (343)
+..|+.+.|+++.. .+...+.+..+++|+.+++-+++-... +...-.++++++...
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 78899999999864 444445567788999999998864322 222334667766544
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.79 E-value=0.023 Score=29.74 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=13.3
Q ss_pred CccCeeecccccccccCCchhhc
Q 042366 45 SFLQYLSLSDNNLSGTIPPCLGN 67 (343)
Q Consensus 45 ~~L~~L~L~~n~i~~~~p~~~~~ 67 (343)
.+|++|+|++|.|+ .+|..++.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666666666666 56655543
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.79 E-value=0.023 Score=29.74 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=13.3
Q ss_pred CccCeeecccccccccCCchhhc
Q 042366 45 SFLQYLSLSDNNLSGTIPPCLGN 67 (343)
Q Consensus 45 ~~L~~L~L~~n~i~~~~p~~~~~ 67 (343)
.+|++|+|++|.|+ .+|..++.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666666666666 56655543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.52 E-value=0.017 Score=26.85 Aligned_cols=11 Identities=55% Similarity=0.745 Sum_probs=3.4
Q ss_pred cCeeecccccc
Q 042366 47 LQYLSLSDNNL 57 (343)
Q Consensus 47 L~~L~L~~n~i 57 (343)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.39 E-value=0.006 Score=57.55 Aligned_cols=113 Identities=21% Similarity=0.109 Sum_probs=68.8
Q ss_pred CCCCcEEEccCCccccc--CCccccCCCccCeeecccc-cccccCC---chhhcCccCccEEEcccCc-ccccccccccc
Q 042366 20 PPSTEVFLVSNNKLSGR--IPPSICSLSFLQYLSLSDN-NLSGTIP---PCLGNFSTELITLHLKNNS-LEGHIHDTFAN 92 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n-~i~~~~p---~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~ 92 (343)
+++|+.+.+.++.--.. .-.....+++|+.|+++++ ......+ ..+.....+|+.|+++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~- 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA- 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH-
Confidence 78889998888733322 2345567889999999873 2111222 2233344589999999987 5532222211
Q ss_pred cEEEeccCCCCCCcCccccCCCCcCEEEecCCc-ccccCCCCCCccCCCCCcEEEeeCCcc
Q 042366 93 AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNR-FDGPLCNSNITFPFQALRIIDLSHNEF 152 (343)
Q Consensus 93 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l 152 (343)
..+++|+.|.+.++. +++..... ....++.|++|+++++..
T Consensus 266 ------------------~~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 ------------------SRCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHG 307 (482)
T ss_pred ------------------hhCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCcc
Confidence 126788888877776 44321111 224577899999987765
No 77
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.30 E-value=0.041 Score=60.50 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 042366 300 IHLCGEPLTMRCSNDGLPKA 319 (343)
Q Consensus 300 ~~l~~np~~~~C~~~~~~~~ 319 (343)
+.|.+|||.|+|...|+..+
T Consensus 24 LdLsgNPw~CDC~L~WL~~W 43 (2740)
T TIGR00864 24 IDLSGNPFECDCGLARLPRW 43 (2740)
T ss_pred EEeeCCccccccccHHHHHH
Confidence 34456788888888765443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.73 E-value=0.0024 Score=52.78 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=70.3
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEe
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 272 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (343)
+...+.||++.|++. .+-..|+.++.++.|+++.|.+. ..|..++....+..+++..|..+ ..|.++...+.++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 567788999999887 55666777888999999999988 77888888888889999999887 5788888999999999
Q ss_pred ccCCcCe
Q 042366 273 LSHSRLW 279 (343)
Q Consensus 273 l~~N~l~ 279 (343)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888763
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=0.016 Score=47.01 Aligned_cols=81 Identities=25% Similarity=0.201 Sum_probs=56.6
Q ss_pred ccCeeeccCCcccccCcccccCCCCCCEEEccCCcC-ccCCCcccc-ccCCCCeEeCCCC-cCccccchhhhcCCcCCeE
Q 042366 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSL-TGNIPVSFE-NMTALESLDLSFN-KLDGRIPEQLLSVTALALL 271 (343)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 271 (343)
.++.++-+++.|..+.-+.+..+++++.|.+.+++- .+---+-++ ..++|+.|+|+.| +|++.-...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 567788888887766677777888888888888752 211111111 3478899999977 6877666677788888888
Q ss_pred eccC
Q 042366 272 NLSH 275 (343)
Q Consensus 272 ~l~~ 275 (343)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7754
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.41 E-value=0.11 Score=27.00 Aligned_cols=13 Identities=54% Similarity=0.664 Sum_probs=5.8
Q ss_pred CCCeEeCCCCcCc
Q 042366 243 ALESLDLSFNKLD 255 (343)
Q Consensus 243 ~L~~L~L~~n~l~ 255 (343)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.41 E-value=0.11 Score=27.00 Aligned_cols=13 Identities=54% Similarity=0.664 Sum_probs=5.8
Q ss_pred CCCeEeCCCCcCc
Q 042366 243 ALESLDLSFNKLD 255 (343)
Q Consensus 243 ~L~~L~L~~n~l~ 255 (343)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.02 E-value=0.0036 Score=51.74 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=63.6
Q ss_pred ccEEEccCCccc--ccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 2 ITTLDLRNNRIQ--GSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 2 L~~L~ls~n~l~--~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
.+.||++.|++. +.-++.+..+..|+++.|.+. .+|..+.....+..+++..|..+ ..|.+..... ++++++...
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~-~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP-HPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC-Ccchhhhcc
Confidence 467888888774 355666788888888888887 67888888888888999999888 8888887775 899999988
Q ss_pred Cccc
Q 042366 80 NSLE 83 (343)
Q Consensus 80 n~l~ 83 (343)
|.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 8865
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.35 E-value=0.079 Score=27.01 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=6.9
Q ss_pred CCCCeEeCCCCcCcc
Q 042366 242 TALESLDLSFNKLDG 256 (343)
Q Consensus 242 ~~L~~L~L~~n~l~~ 256 (343)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555544
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=89.72 E-value=1.2 Score=41.09 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=59.0
Q ss_pred CCcEEEeeCCcccccCCcc-cccCccccccccccCccc--ccCCcccCcchh--HHHHhccCeeeccCCcccccCccc--
Q 042366 141 ALRIIDLSHNEFTGFLPRR-IFPSMEAMKNVDEQGRLE--YMGGAFYDESIT--QKILVMFRAMDFSSNRFHGEIPEV-- 213 (343)
Q Consensus 141 ~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~l~~~~~~~--~~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~-- 213 (343)
.+++|..++|.+.+..... -...-...+.+...+... .+........+. .....-+..+.++.|.+.. .+..
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~i 433 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAI 433 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHH
Confidence 4788888887776543221 112223333444333222 111111111111 1113456677788777762 2222
Q ss_pred --ccCCCCCCEEEccCCcCcc----CCCccccccCCCCeEeCCCCcCc
Q 042366 214 --LGNFKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLD 255 (343)
Q Consensus 214 --l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 255 (343)
+..-+.+.+|++++|.... .+|..+....+++.+..+.|.+.
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 2334678888888887754 34445555567777777777665
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=0.028 Score=45.56 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=42.7
Q ss_pred EEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCcccccccc
Q 042366 95 VNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 171 (343)
Q Consensus 95 l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~ 171 (343)
+|.++..|...--+.+..++.++.|.+.+|.--+...-..+....++|+.|++++|.-.+...-..+..+.+|+.+.
T Consensus 106 VDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 106 VDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 33333333333344566788888888888864433332233345688999999988643233323334444444443
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.79 E-value=0.28 Score=46.26 Aligned_cols=133 Identities=20% Similarity=0.087 Sum_probs=63.1
Q ss_pred CCCCcEEEeeCCcccccC-CcccccCccccccccccCc-ccccCCcccCcchhHHHHhccCeeeccCCc-ccccCccccc
Q 042366 139 FQALRIIDLSHNEFTGFL-PRRIFPSMEAMKNVDEQGR-LEYMGGAFYDESITQKILVMFRAMDFSSNR-FHGEIPEVLG 215 (343)
Q Consensus 139 ~~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~ 215 (343)
.+.|+.+.+..+.-.... -..+...+..|+.++++++ ......... .......++.|+.|+++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL-LLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH-hhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 566666666655322111 1233445666666666652 111100000 01122235677777777766 4433333333
Q ss_pred -CCCCCCEEEccCCc-CccCCC-ccccccCCCCeEeCCCCcCccc--cchhhhcCCcCCeEe
Q 042366 216 -NFKSLKVLNLSHNS-LTGNIP-VSFENMTALESLDLSFNKLDGR--IPEQLLSVTALALLN 272 (343)
Q Consensus 216 -~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ 272 (343)
.++.|++|.+.++. +++..- .....++.|++|+++++..... +......+++++.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 26677777766665 443221 2223456677777776654311 222233455555544
No 87
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=83.03 E-value=0.37 Score=29.71 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCC
Q 042366 305 EPLTMRCSNDGLPK 318 (343)
Q Consensus 305 np~~~~C~~~~~~~ 318 (343)
|||.|+|...|+..
T Consensus 1 NP~~CdC~l~~~~~ 14 (51)
T smart00082 1 NPFICDCELRWLLR 14 (51)
T ss_pred CCccCcCCchHHHH
Confidence 89999999999865
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.98 E-value=1.2 Score=23.17 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=10.4
Q ss_pred ccCeeecccccccccCCc
Q 042366 46 FLQYLSLSDNNLSGTIPP 63 (343)
Q Consensus 46 ~L~~L~L~~n~i~~~~p~ 63 (343)
+|+.|+.++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 5554
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.76 E-value=1.8 Score=22.55 Aligned_cols=14 Identities=64% Similarity=0.776 Sum_probs=7.6
Q ss_pred CCCCeEeCCCCcCc
Q 042366 242 TALESLDLSFNKLD 255 (343)
Q Consensus 242 ~~L~~L~L~~n~l~ 255 (343)
++|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.03 E-value=0.88 Score=24.15 Aligned_cols=14 Identities=43% Similarity=0.506 Sum_probs=8.0
Q ss_pred CccEEEcccCcccc
Q 042366 71 ELITLHLKNNSLEG 84 (343)
Q Consensus 71 ~L~~L~l~~n~l~~ 84 (343)
+|++|+|++|.|..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45666666666543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.43 E-value=12 Score=34.98 Aligned_cols=85 Identities=22% Similarity=0.178 Sum_probs=45.1
Q ss_pred hccCeeeccCCcccccCcccc--cCCCCCCEEEccCCcCccC-CCcccc--------ccCCCCeEeCCCCcCccccch--
Q 042366 194 VMFRAMDFSSNRFHGEIPEVL--GNFKSLKVLNLSHNSLTGN-IPVSFE--------NMTALESLDLSFNKLDGRIPE-- 260 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~-~~~~~~--------~l~~L~~L~L~~n~l~~~~~~-- 260 (343)
..+++|..+.|.+.+...... ..-++.+.+++..-.-..+ .+.... ..--+..+.++.|.+....-.
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 357778777777765443332 2335566666655433111 111110 112356677777776532222
Q ss_pred -hhhcCCcCCeEeccCCcC
Q 042366 261 -QLLSVTALALLNLSHSRL 278 (343)
Q Consensus 261 -~~~~l~~L~~L~l~~N~l 278 (343)
....-+.+..|++++|..
T Consensus 434 n~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred HhhccCcccccccccCCCc
Confidence 234456788888888877
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.26 E-value=1.4 Score=41.39 Aligned_cols=62 Identities=27% Similarity=0.163 Sum_probs=35.7
Q ss_pred CCCCCcEEEccCCccccc--CCccccCCCccCeeecccc--cccccCCchh--hcCccCccEEEcccCccc
Q 042366 19 PPPSTEVFLVSNNKLSGR--IPPSICSLSFLQYLSLSDN--NLSGTIPPCL--GNFSTELITLHLKNNSLE 83 (343)
Q Consensus 19 ~~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n--~i~~~~p~~~--~~~~~~L~~L~l~~n~l~ 83 (343)
..+.+..+.|++|++... +...-...++|+.|+|++| .+. .. .++ .+.. .|++|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~-~el~K~k~l-~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SE-SELDKLKGL-PLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-ch-hhhhhhcCC-CHHHeeecCCccc
Confidence 367777777777777632 1122234467778888887 443 11 112 1222 4777777787765
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.41 E-value=4.2 Score=38.48 Aligned_cols=62 Identities=26% Similarity=0.253 Sum_probs=29.7
Q ss_pred HhccCeeeccCCccccc--CcccccCCCCCCEEEccCC--cCccCCCc--cccccCCCCeEeCCCCcCcc
Q 042366 193 LVMFRAMDFSSNRFHGE--IPEVLGNFKSLKVLNLSHN--SLTGNIPV--SFENMTALESLDLSFNKLDG 256 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n--~l~~~~~~--~~~~l~~L~~L~L~~n~l~~ 256 (343)
.+.+..+.|++|++... +-..-...|+|+.|+|++| .+.. .++ .++ ...|++|.+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k-~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLK-GLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhc-CCCHHHeeecCCcccc
Confidence 44555566666665421 1111223466666666666 2221 111 111 2346666666666643
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.07 E-value=21 Score=18.22 Aligned_cols=11 Identities=45% Similarity=0.374 Sum_probs=6.4
Q ss_pred CCCCeEeCCCC
Q 042366 242 TALESLDLSFN 252 (343)
Q Consensus 242 ~~L~~L~L~~n 252 (343)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45566666665
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.26 E-value=14 Score=41.98 Aligned_cols=30 Identities=33% Similarity=0.316 Sum_probs=13.8
Q ss_pred ccCCcccccCCccccCCCccCeeecccccc
Q 042366 28 VSNNKLSGRIPPSICSLSFLQYLSLSDNNL 57 (343)
Q Consensus 28 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i 57 (343)
|++|+|+.+.+..|..+.+|+.|+|++|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 344444444444444444444444444443
Done!