Query 042366
Match_columns 343
No_of_seqs 220 out of 3147
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 09:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.3E-39 1.5E-43 318.3 27.5 309 1-314 369-751 (768)
2 2id5_A Lingo-1, leucine rich r 100.0 1.4E-36 4.7E-41 285.0 19.1 302 1-318 33-343 (477)
3 3v47_A TOLL-like receptor 5B a 100.0 2.3E-35 7.9E-40 274.9 20.3 300 1-312 31-412 (455)
4 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-34 5.4E-39 256.2 18.8 255 21-311 50-312 (313)
5 3rgz_A Protein brassinosteroid 100.0 6E-34 2E-38 281.5 23.6 274 2-285 345-699 (768)
6 3t6q_A CD180 antigen; protein- 100.0 4.7E-34 1.6E-38 275.4 20.7 299 2-316 256-568 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-33 1.3E-37 269.2 23.9 123 193-320 447-570 (606)
8 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-33 1.6E-37 269.3 23.6 312 1-318 53-590 (635)
9 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-32 1.2E-36 265.6 23.7 305 1-320 273-635 (680)
10 2id5_A Lingo-1, leucine rich r 100.0 2.3E-32 8E-37 256.2 21.2 274 1-283 57-337 (477)
11 3o6n_A APL1; leucine-rich repe 100.0 1.6E-32 5.6E-37 250.7 18.8 301 1-327 46-371 (390)
12 1xku_A Decorin; proteoglycan, 100.0 1.8E-31 6.2E-36 238.4 24.5 273 1-310 32-308 (330)
13 3zyj_A Leucine-rich repeat-con 100.0 6.6E-32 2.3E-36 250.6 21.7 256 3-317 46-301 (440)
14 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-32 8E-37 242.3 16.5 244 1-280 51-305 (313)
15 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-31 3.8E-36 256.6 22.5 116 193-316 402-518 (562)
16 3v47_A TOLL-like receptor 5B a 100.0 2.7E-31 9.1E-36 247.5 22.9 298 3-307 13-383 (455)
17 2ft3_A Biglycan; proteoglycan, 100.0 4.5E-31 1.5E-35 236.0 23.3 270 2-309 35-308 (332)
18 3zyi_A Leucine-rich repeat-con 100.0 2.1E-31 7E-36 248.1 21.6 255 3-316 57-311 (452)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-31 5.3E-36 253.3 20.7 116 193-316 373-489 (520)
20 2z63_A TOLL-like receptor 4, v 100.0 1.2E-31 4.2E-36 256.6 20.0 119 193-316 420-539 (570)
21 3oja_B Anopheles plasmodium-re 100.0 7E-32 2.4E-36 259.6 18.1 297 1-323 52-373 (597)
22 2z66_A Variable lymphocyte rec 100.0 3.5E-31 1.2E-35 234.0 18.5 256 3-317 10-270 (306)
23 4eco_A Uncharacterized protein 100.0 5.5E-31 1.9E-35 254.9 21.2 294 1-309 250-601 (636)
24 3t6q_A CD180 antigen; protein- 100.0 2.6E-30 9E-35 249.2 23.5 150 1-153 34-192 (606)
25 2z81_A CD282 antigen, TOLL-lik 100.0 1E-30 3.6E-35 249.1 19.7 130 1-132 27-166 (549)
26 3j0a_A TOLL-like receptor 5; m 100.0 8.3E-31 2.9E-35 261.5 17.8 271 21-316 266-568 (844)
27 4eco_A Uncharacterized protein 100.0 5.7E-31 1.9E-35 254.8 14.4 253 20-284 205-505 (636)
28 4ecn_A Leucine-rich repeat pro 100.0 1.1E-29 3.6E-34 251.1 19.8 290 1-307 492-839 (876)
29 1xku_A Decorin; proteoglycan, 100.0 1E-28 3.6E-33 220.5 23.5 239 1-279 53-306 (330)
30 4ecn_A Leucine-rich repeat pro 100.0 3.4E-29 1.2E-33 247.6 21.1 264 1-275 449-785 (876)
31 4fmz_A Internalin; leucine ric 100.0 1.7E-28 5.7E-33 220.6 23.8 259 1-283 45-328 (347)
32 1ozn_A Reticulon 4 receptor; N 100.0 3.4E-29 1.2E-33 219.0 18.1 228 3-283 14-242 (285)
33 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.4E-33 220.1 22.0 238 1-279 55-307 (332)
34 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-29 1.5E-33 249.1 21.0 279 1-283 25-355 (844)
35 2z80_A TOLL-like receptor 2, v 100.0 2.4E-29 8.1E-34 226.8 17.0 271 4-312 35-318 (353)
36 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-29 9.2E-34 245.4 18.2 147 4-153 8-158 (680)
37 3o6n_A APL1; leucine-rich repe 100.0 1.4E-28 4.7E-33 224.7 21.7 259 1-282 70-355 (390)
38 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-28 6.1E-33 236.4 23.3 128 1-129 33-168 (606)
39 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-28 4.8E-33 235.1 22.1 150 3-158 34-189 (562)
40 3zyi_A Leucine-rich repeat-con 100.0 1.1E-27 3.6E-32 223.1 25.2 228 1-283 76-307 (452)
41 2z63_A TOLL-like receptor 4, v 100.0 1.4E-28 4.9E-33 235.3 18.6 126 1-127 29-162 (570)
42 3oja_B Anopheles plasmodium-re 100.0 4.2E-28 1.5E-32 233.3 21.6 287 1-306 76-384 (597)
43 1o6v_A Internalin A; bacterial 100.0 8.9E-28 3E-32 224.4 22.2 256 1-283 69-370 (466)
44 2z66_A Variable lymphocyte rec 100.0 3.8E-28 1.3E-32 214.5 17.5 230 1-283 29-265 (306)
45 4fcg_A Uncharacterized protein 100.0 1.1E-27 3.7E-32 213.6 19.9 227 20-278 80-313 (328)
46 2z7x_B TOLL-like receptor 1, v 100.0 1E-27 3.5E-32 227.0 20.7 160 112-283 322-485 (520)
47 3zyj_A Leucine-rich repeat-con 100.0 1.6E-27 5.3E-32 221.1 21.3 227 1-282 65-295 (440)
48 2z80_A TOLL-like receptor 2, v 100.0 1.4E-28 4.9E-33 221.6 13.9 250 1-283 53-318 (353)
49 4fmz_A Internalin; leucine ric 100.0 2.6E-27 8.9E-32 212.8 21.5 253 1-279 67-346 (347)
50 1ozn_A Reticulon 4 receptor; N 100.0 8.1E-28 2.8E-32 210.2 15.7 232 24-316 14-246 (285)
51 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-27 4.4E-32 227.7 17.7 153 4-159 9-167 (549)
52 1o6v_A Internalin A; bacterial 99.9 1.7E-26 5.7E-31 215.8 21.7 251 1-278 47-321 (466)
53 4g8a_A TOLL-like receptor 4; l 99.9 2.8E-26 9.5E-31 221.9 24.0 139 138-283 443-584 (635)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-28 4.1E-33 218.9 6.1 253 4-274 14-270 (317)
55 4fcg_A Uncharacterized protein 99.9 1.5E-26 5.1E-31 206.2 18.5 218 1-256 82-315 (328)
56 1wwl_A Monocyte differentiatio 99.9 6.1E-29 2.1E-33 220.2 2.7 245 20-279 42-309 (312)
57 1p9a_G Platelet glycoprotein I 99.9 2.8E-26 9.7E-31 200.8 16.7 85 194-278 100-184 (290)
58 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-25 9.9E-30 206.4 24.1 210 1-239 43-254 (457)
59 3oja_A Leucine-rich immune mol 99.9 3.1E-27 1E-31 221.5 10.8 219 19-279 32-250 (487)
60 2z62_A TOLL-like receptor 4, v 99.9 7E-26 2.4E-30 197.0 18.7 228 4-285 11-243 (276)
61 3oja_A Leucine-rich immune mol 99.9 4.3E-27 1.5E-31 220.6 10.8 231 1-274 35-270 (487)
62 2o6q_A Variable lymphocyte rec 99.9 2.1E-25 7E-30 193.4 19.6 207 20-283 15-222 (270)
63 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-25 1.1E-29 206.2 22.2 259 1-280 65-353 (457)
64 2o6q_A Variable lymphocyte rec 99.9 1E-24 3.5E-29 189.0 21.7 203 2-257 18-220 (270)
65 2z62_A TOLL-like receptor 4, v 99.9 4.3E-25 1.5E-29 192.0 17.5 226 25-312 11-241 (276)
66 1jl5_A Outer protein YOPM; leu 99.9 8.8E-24 3E-28 196.3 25.3 254 2-284 93-377 (454)
67 1wwl_A Monocyte differentiatio 99.9 2.9E-26 1E-30 203.0 7.4 246 39-308 37-309 (312)
68 3g06_A SSPH2 (leucine-rich rep 99.9 5.8E-24 2E-28 203.7 23.7 246 2-284 42-302 (622)
69 3rfs_A Internalin B, repeat mo 99.9 1E-24 3.4E-29 189.3 13.9 202 20-285 40-241 (272)
70 1p9a_G Platelet glycoprotein I 99.9 6.2E-24 2.1E-28 185.9 19.0 202 20-281 9-210 (290)
71 1jl5_A Outer protein YOPM; leu 99.9 1.3E-23 4.5E-28 195.1 21.9 255 1-284 112-416 (454)
72 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-25 5.2E-30 198.8 8.4 234 23-279 12-250 (317)
73 4glp_A Monocyte differentiatio 99.9 7.8E-25 2.7E-29 193.6 11.2 82 193-279 223-307 (310)
74 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-26 4.1E-31 216.4 -1.8 276 1-280 57-412 (461)
75 1z7x_W Ribonuclease inhibitor; 99.9 6.7E-27 2.3E-31 218.1 -5.6 174 1-176 29-238 (461)
76 3m19_A Variable lymphocyte rec 99.9 3.7E-23 1.3E-27 177.2 16.3 215 46-316 15-234 (251)
77 2xwt_C Thyrotropin receptor; s 99.9 3E-23 1E-27 176.5 14.0 199 19-276 29-236 (239)
78 3goz_A Leucine-rich repeat-con 99.9 8.9E-25 3E-29 197.4 2.9 261 4-281 2-299 (362)
79 3rfs_A Internalin B, repeat mo 99.9 2.1E-22 7.1E-27 174.7 17.8 206 21-285 19-224 (272)
80 4ay9_X Follicle-stimulating ho 99.9 1.6E-23 5.4E-28 188.4 10.9 201 3-233 12-217 (350)
81 1h6u_A Internalin H; cell adhe 99.9 1.2E-22 4E-27 179.4 15.6 192 20-280 40-231 (308)
82 3g06_A SSPH2 (leucine-rich rep 99.9 5E-22 1.7E-26 190.3 20.4 231 1-266 62-308 (622)
83 2xwt_C Thyrotropin receptor; s 99.9 2.2E-22 7.6E-27 171.1 15.4 194 1-253 32-237 (239)
84 2ca6_A RAN GTPase-activating p 99.9 3E-24 1E-28 195.7 3.1 237 20-282 31-319 (386)
85 3m19_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 171.3 15.7 186 71-316 15-201 (251)
86 2ast_B S-phase kinase-associat 99.9 9.2E-24 3.1E-28 188.7 3.7 253 2-284 49-311 (336)
87 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.8E-26 172.5 15.3 189 1-256 42-231 (308)
88 3cvr_A Invasion plasmid antige 99.9 1E-21 3.5E-26 186.1 15.0 216 22-319 60-291 (571)
89 3goz_A Leucine-rich repeat-con 99.9 9.8E-24 3.3E-28 190.6 0.3 270 25-310 2-299 (362)
90 4glp_A Monocyte differentiatio 99.9 5.8E-22 2E-26 175.2 11.2 220 46-308 65-307 (310)
91 2ca6_A RAN GTPase-activating p 99.9 3.4E-23 1.2E-27 188.7 -0.5 255 36-311 23-319 (386)
92 2xot_A Amphoterin-induced prot 99.8 2.9E-21 9.8E-26 174.3 10.0 166 114-314 39-208 (361)
93 2o6s_A Variable lymphocyte rec 99.8 2.3E-20 8E-25 155.1 14.7 181 3-243 10-190 (208)
94 3cvr_A Invasion plasmid antige 99.8 3.6E-20 1.2E-24 175.5 17.1 189 1-267 60-255 (571)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-20 3.6E-25 158.6 11.7 87 194-280 81-167 (220)
96 2ast_B S-phase kinase-associat 99.8 1.3E-21 4.4E-26 174.8 5.9 227 20-276 46-282 (336)
97 2v9t_B SLIT homolog 2 protein 99.8 1.5E-20 5.1E-25 157.7 11.4 161 117-317 14-174 (220)
98 4ay9_X Follicle-stimulating ho 99.8 8.3E-20 2.8E-24 164.1 14.0 214 1-253 31-257 (350)
99 2xot_A Amphoterin-induced prot 99.8 1.7E-19 5.8E-24 162.7 14.3 104 24-153 21-125 (361)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-19 5.9E-24 151.2 11.7 163 117-318 14-176 (220)
101 2o6s_A Variable lymphocyte rec 99.8 4.5E-19 1.5E-23 147.3 13.8 175 48-285 10-184 (208)
102 2v9t_B SLIT homolog 2 protein 99.8 3E-19 1E-23 149.7 12.4 137 114-282 32-168 (220)
103 1h6t_A Internalin B; cell adhe 99.8 2.5E-19 8.6E-24 156.7 11.2 172 42-280 43-214 (291)
104 1h6t_A Internalin B; cell adhe 99.8 5.3E-19 1.8E-23 154.6 13.1 172 19-257 44-215 (291)
105 3e6j_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 143.9 15.9 137 114-283 40-176 (229)
106 3ogk_B Coronatine-insensitive 99.8 2.7E-21 9.3E-26 185.7 -4.2 276 1-280 165-527 (592)
107 1m9s_A Internalin B; cell inva 99.8 5.2E-19 1.8E-23 169.2 11.2 81 193-279 130-210 (605)
108 1m9s_A Internalin B; cell inva 99.8 1.8E-18 6.2E-23 165.4 14.8 173 20-259 42-214 (605)
109 2wfh_A SLIT homolog 2 protein 99.8 7.6E-19 2.6E-23 144.1 9.9 120 193-318 30-149 (193)
110 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.6E-22 140.5 15.2 147 3-153 22-172 (229)
111 1xeu_A Internalin C; cellular 99.8 1.9E-18 6.7E-23 148.8 10.1 169 44-280 18-186 (263)
112 1w8a_A SLIT protein; signaling 99.8 2.1E-18 7.3E-23 141.4 9.8 136 143-316 11-147 (192)
113 4ezg_A Putative uncharacterize 99.8 6.1E-18 2.1E-22 139.2 11.7 149 71-279 45-194 (197)
114 4ezg_A Putative uncharacterize 99.8 1.2E-17 4.1E-22 137.5 13.4 152 111-307 41-193 (197)
115 1xeu_A Internalin C; cellular 99.7 3.2E-18 1.1E-22 147.4 7.9 170 20-257 18-187 (263)
116 3ogk_B Coronatine-insensitive 99.7 3E-20 1E-24 178.4 -6.4 66 215-280 433-502 (592)
117 1dce_A Protein (RAB geranylger 99.7 3.1E-20 1.1E-24 176.6 -6.9 200 42-285 346-552 (567)
118 1w8a_A SLIT protein; signaling 99.7 1.4E-17 4.9E-22 136.4 9.5 133 117-283 11-143 (192)
119 4b8c_D Glucose-repressible alc 99.7 1.5E-18 5.1E-23 169.9 3.8 213 2-255 175-404 (727)
120 2p1m_B Transport inhibitor res 99.7 3.9E-19 1.3E-23 170.7 -2.9 64 214-278 428-493 (594)
121 3sb4_A Hypothetical leucine ri 99.7 1.6E-16 5.3E-21 141.4 12.0 89 193-283 225-314 (329)
122 1dce_A Protein (RAB geranylger 99.7 2.1E-19 7.3E-24 170.8 -7.0 204 18-273 346-567 (567)
123 2p1m_B Transport inhibitor res 99.7 2.2E-18 7.6E-23 165.4 -0.4 87 192-279 430-519 (594)
124 2o6r_A Variable lymphocyte rec 99.7 6.3E-16 2.2E-20 124.8 11.6 114 194-312 28-141 (177)
125 4b8c_D Glucose-repressible alc 99.7 6.6E-17 2.3E-21 158.2 6.9 192 2-231 193-404 (727)
126 2ell_A Acidic leucine-rich nuc 99.7 7.8E-16 2.7E-20 123.2 11.4 134 113-280 23-161 (168)
127 3sb4_A Hypothetical leucine ri 99.6 2.4E-16 8.1E-21 140.3 8.5 163 113-281 100-288 (329)
128 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.9E-20 122.2 9.9 131 20-153 23-160 (168)
129 2o6r_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 120.2 13.1 131 2-155 9-139 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 5.1E-15 1.8E-19 121.2 13.4 128 3-154 13-140 (193)
131 4fdw_A Leucine rich hypothetic 99.6 3.2E-14 1.1E-18 129.6 19.6 218 22-279 136-358 (401)
132 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.7E-20 119.2 8.9 129 113-275 16-149 (149)
133 2je0_A Acidic leucine-rich nuc 99.6 2.3E-15 7.8E-20 117.9 7.6 128 20-173 16-148 (149)
134 3g39_A Variable lymphocyte rec 99.6 4.1E-15 1.4E-19 119.2 8.9 141 141-314 10-151 (170)
135 3g39_A Variable lymphocyte rec 99.6 9.9E-15 3.4E-19 117.0 10.2 110 195-312 10-119 (170)
136 4fdw_A Leucine rich hypothetic 99.6 9.7E-14 3.3E-18 126.4 17.4 219 20-279 112-335 (401)
137 2r9u_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 114.3 10.3 86 194-279 33-118 (174)
138 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.3E-19 115.1 9.3 134 110-280 15-154 (176)
139 2r9u_A Variable lymphocyte rec 99.5 5E-14 1.7E-18 113.2 10.5 108 197-312 15-122 (174)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-14 4.6E-19 116.9 6.4 59 20-83 18-77 (176)
141 2ifg_A High affinity nerve gro 99.5 7.6E-14 2.6E-18 124.9 7.4 85 194-279 31-116 (347)
142 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.3E-20 124.4 -3.5 83 193-279 92-185 (198)
143 1ds9_A Outer arm dynein; leuci 99.4 1.9E-15 6.3E-20 124.4 -5.5 88 193-283 69-157 (198)
144 3un9_A NLR family member X1; l 99.4 4.1E-15 1.4E-19 134.2 -4.6 175 45-264 72-261 (372)
145 3un9_A NLR family member X1; l 99.3 4.3E-14 1.5E-18 127.4 -4.1 88 193-280 154-253 (372)
146 2ifg_A High affinity nerve gro 99.3 6.8E-12 2.3E-16 112.1 8.6 109 199-315 13-123 (347)
147 4fs7_A Uncharacterized protein 99.3 8.8E-11 3E-15 106.8 15.2 251 15-276 65-353 (394)
148 4gt6_A Cell surface protein; l 99.1 5E-09 1.7E-13 95.2 20.0 111 159-278 259-369 (394)
149 2ra8_A Uncharacterized protein 99.0 9.9E-11 3.4E-15 104.8 4.5 83 193-277 251-341 (362)
150 4fs7_A Uncharacterized protein 99.0 4.7E-09 1.6E-13 95.3 15.6 222 14-276 155-376 (394)
151 4h09_A Hypothetical leucine ri 99.0 4.5E-08 1.5E-12 88.3 20.4 110 157-274 232-341 (379)
152 4gt6_A Cell surface protein; l 99.0 1.9E-08 6.6E-13 91.3 17.2 260 2-278 66-390 (394)
153 2ra8_A Uncharacterized protein 98.9 7.5E-10 2.6E-14 99.1 5.3 184 20-253 138-341 (362)
154 4h09_A Hypothetical leucine ri 98.8 8.7E-07 3E-11 79.8 19.8 248 2-268 48-358 (379)
155 1io0_A Tropomodulin; LRR prote 98.7 2.9E-09 9.8E-14 86.1 1.0 85 194-278 65-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 2E-08 6.8E-13 81.2 1.4 118 17-153 32-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 4.6E-07 1.6E-11 77.0 6.5 67 215-283 167-237 (267)
158 3rw6_A Nuclear RNA export fact 98.3 2.6E-07 8.8E-12 78.6 2.9 79 192-272 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 2.7E-07 9.3E-12 73.0 1.8 83 195-277 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.6E-11 69.6 2.9 86 20-125 60-150 (176)
161 3rfe_A Platelet glycoprotein I 98.1 3.5E-06 1.2E-10 63.5 4.5 17 301-317 61-77 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 7E-06 2.4E-10 66.1 0.7 86 193-278 69-169 (197)
163 3rfe_A Platelet glycoprotein I 97.5 0.00016 5.6E-09 54.2 5.8 54 4-57 12-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.5 6E-05 2E-09 60.7 3.2 84 193-276 40-136 (197)
165 2lz0_A Uncharacterized protein 72.4 11 0.00038 26.0 6.1 47 205-252 7-53 (100)
166 2lz0_A Uncharacterized protein 68.0 8.1 0.00028 26.8 4.6 48 228-276 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-39 Score=318.27 Aligned_cols=309 Identities=34% Similarity=0.518 Sum_probs=248.4
Q ss_pred CccEEEccCCcccccCCCC-----CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEE
Q 042366 1 NITTLDLRNNRIQGSILVP-----PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITL 75 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L 75 (343)
+|++|++++|.+++..+.. +++|++|++++|++++..|..|.++++|++|+|++|.+++.+|..+..+. +|++|
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDL 447 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEE
Confidence 3667777777776644443 45688888888888877888888888888888888888877777777765 78888
Q ss_pred EcccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCc
Q 042366 76 HLKNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNE 151 (343)
Q Consensus 76 ~l~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 151 (343)
++++|.+++..+..+.. +.+++++|.+.+..|..+..+++|++|++++|++.+..|..+ ..+++|++|++++|.
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNS 525 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCc
Confidence 88888888777776665 778888888888888888888888888888888877666665 667788888888888
Q ss_pred ccccCCcccccCccccccccccCcccc--cCCcccC--------------------------------------------
Q 042366 152 FTGFLPRRIFPSMEAMKNVDEQGRLEY--MGGAFYD-------------------------------------------- 185 (343)
Q Consensus 152 l~~~~~~~~~~~l~~L~~l~~~~~~~~--~~~~~~~-------------------------------------------- 185 (343)
+.+.+|.. +..+++|+.+++++|... +...++.
T Consensus 526 l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 526 FSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred ccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 87777754 566777887777766421 1110000
Q ss_pred -----------------cch--hHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCe
Q 042366 186 -----------------ESI--TQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 246 (343)
Q Consensus 186 -----------------~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 246 (343)
... ....++.|++|++++|.+++.+|..+..++.|+.|+|++|.+.+.+|..++.+++|+.
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 000 0112467999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCC
Q 042366 247 LDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSND 314 (343)
Q Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~ 314 (343)
|+|++|++++.+|..+..+++|+.|++++|+++|.+|+..++..+...++.+|+.+||.|+. .|...
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987 77543
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=284.96 Aligned_cols=302 Identities=18% Similarity=0.164 Sum_probs=243.0
Q ss_pred CccEEEccCCccccc---CCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGS---ILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~---~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
++++|++++|.+++. .+..+++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|...+...++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEEC
Confidence 478889999988764 3555888999999999988888888999999999999999888 666665444458999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
++|.+++..+..|.. +.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEEEESCCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEeCCCCcCc
Confidence 999988877777665 889999998888888888888999999999988876433333 56888999999999887
Q ss_pred ccCCcccccCccccccccccCcccc--cCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCc
Q 042366 154 GFLPRRIFPSMEAMKNVDEQGRLEY--MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLT 231 (343)
Q Consensus 154 ~~~~~~~~~~l~~L~~l~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 231 (343)
+ ++...+..+.+|+.|+++++... .....+. ..+|++|++++|.++...+..+..+++|++|+|++|.+.
T Consensus 190 ~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 190 A-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp E-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred E-eChhhcccCcccceeeCCCCccccccCccccc-------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 4 45556788888888888875321 1111111 348999999999999665578899999999999999999
Q ss_pred cCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCC
Q 042366 232 GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRC 311 (343)
Q Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C 311 (343)
+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+|++..+. .+.....+..+.+.+|||.|+|
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES-----VFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG-----GBSCGGGCCEEECCSSCEECSG
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh-----HcCCCcccCEEEccCCCccCcc
Confidence 88888899999999999999999998899999999999999999999654332 3444555667799999999999
Q ss_pred CCCCCCC
Q 042366 312 SNDGLPK 318 (343)
Q Consensus 312 ~~~~~~~ 318 (343)
...|...
T Consensus 337 ~~~~~~~ 343 (477)
T 2id5_A 337 RLLWVFR 343 (477)
T ss_dssp GGHHHHT
T ss_pred chHhHHh
Confidence 9887643
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-35 Score=274.94 Aligned_cols=300 Identities=20% Similarity=0.233 Sum_probs=214.7
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccc-cCCccccCCCccCeeecccccccccCCchhhcCccCccEEE
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSG-RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLH 76 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~ 76 (343)
+|++|++++|.+++.. +..+++|++|++++|.+.+ +.+..|.++++|++|+|++|.+++..|..+..+. +|++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~ 109 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA-NLEVLT 109 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT-TCCEEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc-cCCEEe
Confidence 4788999999988653 4458899999999998874 4567889999999999999999866677777765 899999
Q ss_pred cccCccccccccc--ccc----cEEEeccCCCCCCcCcc-ccCCCCcCEEEecCCcccccCCCCCCcc------------
Q 042366 77 LKNNSLEGHIHDT--FAN----AIVNVENNMTSDSFPCW-LGSLPVLKILVLRSNRFDGPLCNSNITF------------ 137 (343)
Q Consensus 77 l~~n~l~~~~~~~--~~~----~~l~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------ 137 (343)
+++|.+++..+.. |.. +.|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+...
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999988744332 443 88999999998887775 7888999999999998887655544221
Q ss_pred --------------------CCCCCcEEEeeCCcccccCCcccccC--cc------------------------------
Q 042366 138 --------------------PFQALRIIDLSHNEFTGFLPRRIFPS--ME------------------------------ 165 (343)
Q Consensus 138 --------------------~~~~L~~L~l~~n~l~~~~~~~~~~~--l~------------------------------ 165 (343)
.+++|++|++++|.+.+..|..+... ..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 22456666666665554333222110 02
Q ss_pred ------ccccccccCcccc-cCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccc
Q 042366 166 ------AMKNVDEQGRLEY-MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 238 (343)
Q Consensus 166 ------~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 238 (343)
+|+.++++++... ..... ...+++|++|++++|.+++..|..|..+++|++|+|++|.+.+..+..|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSV------FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTT------TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred ccccccCceEEEecCccccccchhh------cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 2333333332111 00000 1225678888888888887777788888888888888888887777788
Q ss_pred cccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCC
Q 042366 239 ENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCS 312 (343)
Q Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~ 312 (343)
+.+++|++|+|++|++++..|..+..+++|+.|++++|+|++..+. .+..+..+..+++.+||+.|+|.
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG-----IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-----TTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh-----HhccCCcccEEEccCCCcccCCC
Confidence 8888888888888888877788888888888888888888653332 23444555677999999999998
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.6e-34 Score=256.20 Aligned_cols=255 Identities=29% Similarity=0.496 Sum_probs=206.2
Q ss_pred CCCcEEEccCCcccc--cCCccccCCCccCeeeccc-ccccccCCchhhcCccCccEEEcccCcccccccccccc----c
Q 042366 21 PSTEVFLVSNNKLSG--RIPPSICSLSFLQYLSLSD-NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFAN----A 93 (343)
Q Consensus 21 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----~ 93 (343)
.+++.|+|++|++++ .+|..|.++++|++|+|++ |.+.+.+|..+..+. +|++|++++|.+++..+..|.. +
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 678999999999988 7888899999999999995 888878888888775 8999999999988776666654 6
Q ss_pred EEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCC-CCcEEEeeCCcccccCCcccccCccccccccc
Q 042366 94 IVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQ-ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE 172 (343)
Q Consensus 94 ~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~ 172 (343)
.+++++|.+.+..|..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.+++.+|..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~~~---------- 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTFAN---------- 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGGGG----------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHHhC----------
Confidence 66666666666666666667777777777777765555544 4455 6777777777766555543211
Q ss_pred cCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCC
Q 042366 173 QGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 252 (343)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 252 (343)
+. |++|++++|.+++..|..|..+++|++|+|++|.+.+..+. +..+++|++|++++|
T Consensus 197 --------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 197 --------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254 (313)
T ss_dssp --------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS
T ss_pred --------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC
Confidence 23 89999999999989999999999999999999999966655 788999999999999
Q ss_pred cCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCC
Q 042366 253 KLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRC 311 (343)
Q Consensus 253 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C 311 (343)
.+++..|..+..+++|+.|++++|++++.+|....+..+..+.+.+|..+||.|+. .|
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 99999999999999999999999999999998877777888888888888887765 45
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-34 Score=281.50 Aligned_cols=274 Identities=31% Similarity=0.433 Sum_probs=205.6
Q ss_pred ccEEEccCCcccccCCCC---CC-CCcEEEccCCcccccCCccccC--CCccCeeecccccccccCCchhhcCccCccEE
Q 042366 2 ITTLDLRNNRIQGSILVP---PP-STEVFLVSNNKLSGRIPPSICS--LSFLQYLSLSDNNLSGTIPPCLGNFSTELITL 75 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~~---~~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L 75 (343)
|++|++++|.+++.++.. ++ +|++|++++|++++..|..+.. +++|++|++++|.+++.+|..+..+. +|++|
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L 423 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSL 423 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEE
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEE
Confidence 445555555554444433 22 5555555555555555555544 56677777777777766776666664 78888
Q ss_pred EcccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCc
Q 042366 76 HLKNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNE 151 (343)
Q Consensus 76 ~l~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 151 (343)
++++|.+++..+..+.. +.+++++|.+.+..|..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNR 501 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCc
Confidence 88888777777776665 778888888888888888888888888888888877666665 678888888888888
Q ss_pred ccccCCcccccCccccccccccCcccc-cCCcccCcchhHHHHhccCeeeccCCcccccCcccc----------------
Q 042366 152 FTGFLPRRIFPSMEAMKNVDEQGRLEY-MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVL---------------- 214 (343)
Q Consensus 152 l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---------------- 214 (343)
+++.+|.. +..+++|+.|++++|... .....+ ..+++|++|++++|.+++.+|..+
T Consensus 502 l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l------~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 502 LTGEIPKW-IGRLENLAILKLSNNSFSGNIPAEL------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp CCSCCCGG-GGGCTTCCEEECCSSCCEEECCGGG------GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred cCCcCChH-HhcCCCCCEEECCCCcccCcCCHHH------cCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 88777754 567888888888877532 111111 226889999999998876666433
Q ss_pred ------------------------------------------------------cCCCCCCEEEccCCcCccCCCccccc
Q 042366 215 ------------------------------------------------------GNFKSLKVLNLSHNSLTGNIPVSFEN 240 (343)
Q Consensus 215 ------------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~ 240 (343)
..+++|+.|+|++|++.+.+|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 33568999999999999999999999
Q ss_pred cCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCC
Q 042366 241 MTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQG 285 (343)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 285 (343)
+++|+.|+|++|++++.+|..+..+++|+.||+++|+++|.+|..
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 999999999999999999999999999999999999999999974
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.7e-34 Score=275.40 Aligned_cols=299 Identities=20% Similarity=0.244 Sum_probs=248.2
Q ss_pred ccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcc
Q 042366 2 ITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK 78 (343)
Q Consensus 2 L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~ 78 (343)
|+.|++++|.+++.. +..+++|++|++++|+++ .+|..+.++++|++|++++|.+++..|..+..+. +|++|+++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~ 333 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIK 333 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECC
Confidence 678999999987644 555899999999999999 6778899999999999999999855566666665 89999999
Q ss_pred cCcccccccc-cccc----cEEEeccCCCCCCc--CccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCc
Q 042366 79 NNSLEGHIHD-TFAN----AIVNVENNMTSDSF--PCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNE 151 (343)
Q Consensus 79 ~n~l~~~~~~-~~~~----~~l~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 151 (343)
+|.+.+..+. .+.. +.+++++|.+.+.. +..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTR 411 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCc
Confidence 9998855443 3444 89999999998776 7788899999999999999987766666 678999999999999
Q ss_pred ccccCCcccccCccccccccccCcccccC-CcccCcchhHHHHhccCeeeccCCccccc---CcccccCCCCCCEEEccC
Q 042366 152 FTGFLPRRIFPSMEAMKNVDEQGRLEYMG-GAFYDESITQKILVMFRAMDFSSNRFHGE---IPEVLGNFKSLKVLNLSH 227 (343)
Q Consensus 152 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~ 227 (343)
+.+..+...+..+++|+.|+++++..... ...+. .+++|++|++++|.+++. .+..+..+++|++|++++
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD------GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT------TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHh------CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 98777777788999999999998754322 22121 278999999999999752 336788999999999999
Q ss_pred CcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCC
Q 042366 228 NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPL 307 (343)
Q Consensus 228 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~ 307 (343)
|.+.+..|..|..+++|++|+|++|++++..|..+..++.| .|++++|++++..|. .+..+..+..+++.+|||
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS-----LLPILSQQRTINLRQNPL 559 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG-----GHHHHHTSSEEECTTCCE
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh-----hcccCCCCCEEeCCCCCc
Confidence 99998889999999999999999999999999999999999 999999999765554 234445567789999999
Q ss_pred CCCCCCCCC
Q 042366 308 TMRCSNDGL 316 (343)
Q Consensus 308 ~~~C~~~~~ 316 (343)
.|+|...|.
T Consensus 560 ~c~c~~~~~ 568 (606)
T 3t6q_A 560 DCTCSNIYF 568 (606)
T ss_dssp ECSGGGHHH
T ss_pred cccCCcHHH
Confidence 999996554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-33 Score=269.15 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=90.4
Q ss_pred HhccCeeeccCCcccc-cCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeE
Q 042366 193 LVMFRAMDFSSNRFHG-EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 271 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (343)
+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+..|..|+.+++|++|++++|++++..|..+..+++|+.|
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 5677777777777765 367777778888888888888877777778888888888888888887777788888888888
Q ss_pred eccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 042366 272 NLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGLPKAP 320 (343)
Q Consensus 272 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~~~~~ 320 (343)
++++|+|+ .+|.. +..+. ..+..+++.+|||.|+|...|...+.
T Consensus 527 ~l~~N~l~-~~p~~--~~~l~--~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 527 DCSFNRIE-TSKGI--LQHFP--KSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp ECTTSCCC-CEESC--GGGSC--TTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred ECCCCcCc-ccCHh--Hhhhc--ccCcEEEccCCCcccCCccHHHHHHH
Confidence 88888885 34442 22221 12456789999999999986654443
No 8
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.8e-33 Score=269.32 Aligned_cols=312 Identities=18% Similarity=0.218 Sum_probs=224.6
Q ss_pred CccEEEccCCccccc---CCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGS---ILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~---~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
++++|||++|.|++. .|..+++|++|+|++|+|+++.+.+|.++++|++|+|++|+++ .+|...+..+++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence 478999999999864 4566999999999999999888899999999999999999998 677665555569999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCC-cCccccCCCCcCEEEecCCcccccCCCCC------------------
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDS-FPCWLGSLPVLKILVLRSNRFDGPLCNSN------------------ 134 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------ 134 (343)
++|++++..+..|.. +.|++++|.+... .|..+..+++|++|++++|++.+..+..+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 999999888777766 8999999998764 57778888999999998887643111000
Q ss_pred --------------------------------------------------------------------------------
Q 042366 135 -------------------------------------------------------------------------------- 134 (343)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (343)
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence
Q ss_pred -------------------------------CccCCCCCcEEEeeCCcccccC---------------------------
Q 042366 135 -------------------------------ITFPFQALRIIDLSHNEFTGFL--------------------------- 156 (343)
Q Consensus 135 -------------------------------~~~~~~~L~~L~l~~n~l~~~~--------------------------- 156 (343)
.......++.|++.+|.+....
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 0000112333333333221100
Q ss_pred ------------------Cc----------------------ccccCccccccccccCccccc--CCcccC---------
Q 042366 157 ------------------PR----------------------RIFPSMEAMKNVDEQGRLEYM--GGAFYD--------- 185 (343)
Q Consensus 157 ------------------~~----------------------~~~~~l~~L~~l~~~~~~~~~--~~~~~~--------- 185 (343)
+. ..+..+.+|+.+++..+.... ....+.
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 00 001122333333333221100 000000
Q ss_pred ---------cchhHHHHhccCeeeccCCccc-ccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCc
Q 042366 186 ---------ESITQKILVMFRAMDFSSNRFH-GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 255 (343)
Q Consensus 186 ---------~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (343)
.......++.+++|++++|.+. ...|..|..+++|++|+|++|++++..|..|+++++|++|+|++|+|+
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 0001122678899999999754 457888999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcc-cccCCCCCCCCCCCCCCCCCCCCC
Q 042366 256 GRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFAND-SYFGNIHLCGEPLTMRCSNDGLPK 318 (343)
Q Consensus 256 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~-~~~~~~~l~~np~~~~C~~~~~~~ 318 (343)
+..+..|..+++|+.|++++|+|++..|.. +..+ ..+..+++.+|||.|+|...|...
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----l~~l~~~L~~L~L~~Np~~C~C~~~~~~~ 590 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-----LQHFPSSLAFLNLTQNDFACTCEHQSFLQ 590 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSC-----TTCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHH-----HHhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence 988889999999999999999998877763 2222 335567899999999999887643
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-32 Score=265.64 Aligned_cols=305 Identities=19% Similarity=0.192 Sum_probs=171.5
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccc-----cCC----ccccCCCccCeeecccccccccCCchhhcC
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSG-----RIP----PSICSLSFLQYLSLSDNNLSGTIPPCLGNF 68 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~-----~~~----~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~ 68 (343)
+|++|++++|.+.+.. +..+++|++|++++|...+ .+| ..|..+++|++|++++|.+++..+..+..+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 352 (680)
T 1ziw_A 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352 (680)
T ss_dssp TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC
T ss_pred cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc
Confidence 4677788887776543 3346777777776654332 122 256667777777777777764333333333
Q ss_pred ccCccEEEcccCcccc--ccccccc------ccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCC-CCCccCC
Q 042366 69 STELITLHLKNNSLEG--HIHDTFA------NAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCN-SNITFPF 139 (343)
Q Consensus 69 ~~~L~~L~l~~n~l~~--~~~~~~~------~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ 139 (343)
++|++|++++|.+.. .....|. -+.+++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+ ..+
T Consensus 353 -~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~l 429 (680)
T 1ziw_A 353 -INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW--RGL 429 (680)
T ss_dssp -TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG--TTC
T ss_pred -cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccc--cCc
Confidence 367777766665332 2222221 15566666666666666666666666666666665543321 22 445
Q ss_pred CCCcEEEeeCCcccccCCccccc--------------------------CccccccccccCcccc-cCCcccCcchhHHH
Q 042366 140 QALRIIDLSHNEFTGFLPRRIFP--------------------------SMEAMKNVDEQGRLEY-MGGAFYDESITQKI 192 (343)
Q Consensus 140 ~~L~~L~l~~n~l~~~~~~~~~~--------------------------~l~~L~~l~~~~~~~~-~~~~~~~~~~~~~~ 192 (343)
++|++|++++|.+.. ++...+. .+++|+.|+++++... .....+ ..
T Consensus 430 ~~L~~L~Ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~------~~ 502 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML------EG 502 (680)
T ss_dssp TTCCEEECCSCSEEE-CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT------TT
T ss_pred ccccEEecCCCCcce-eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh------cc
Confidence 555666665555542 2222334 4444555554444221 111111 11
Q ss_pred HhccCeeeccCCcccccCc--------ccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhc
Q 042366 193 LVMFRAMDFSSNRFHGEIP--------EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 264 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (343)
+++|++|++++|.+++..+ ..|..+++|++|+|++|.+..+.+..|.++++|+.|+|++|++++..+..|..
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 4566666666666653211 12556666666666666666444455666777777777777777655555666
Q ss_pred CCcCCeEeccCCcCeecCCCCCccCCCC-cccccCCCCCCCCCCCCCCCC-CCCCCCC
Q 042366 265 VTALALLNLSHSRLWGRIPQGNQFNTFA-NDSYFGNIHLCGEPLTMRCSN-DGLPKAP 320 (343)
Q Consensus 265 l~~L~~L~l~~N~l~~~~p~~~~~~~~~-~~~~~~~~~l~~np~~~~C~~-~~~~~~~ 320 (343)
+++|+.|++++|+|++..|.. +. ....+..+++.+|||.|+|.. .|...+.
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~-----~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKV-----FGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHH-----HHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred CCCCCEEECCCCcCCccChhH-----hcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 677777777777775543321 11 233455678999999999996 7765543
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=256.20 Aligned_cols=274 Identities=18% Similarity=0.143 Sum_probs=235.2
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+|++|++++|.+++.. +..+++|++|+|++|+++...+..|.++++|++|+|++|.+++..+..+..+. +|++|++
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l 135 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEV 135 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEE
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEEC
Confidence 5899999999998753 45589999999999999988778899999999999999999965666666664 9999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
++|.+++..+..|.. +.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|...
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYL 213 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTC
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccc
Confidence 999999888877776 899999999998888889999999999999999988665555 77899999999999887
Q ss_pred ccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccC
Q 042366 154 GFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 233 (343)
Q Consensus 154 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 233 (343)
+.++...+.. .+|+.|+++++....... .....+++|++|++++|.+++..+..|..+++|++|+|++|.+.+.
T Consensus 214 ~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 214 DTMTPNCLYG-LNLTSLSITHCNLTAVPY-----LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp CEECTTTTTT-CCCSEEEEESSCCCSCCH-----HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred cccCcccccC-ccccEEECcCCcccccCH-----HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 7777765544 489999998874332110 0112268999999999999988888899999999999999999998
Q ss_pred CCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCC
Q 042366 234 IPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIP 283 (343)
Q Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 283 (343)
.+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.+..+
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 89999999999999999999998877888999999999999999976544
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-32 Score=250.74 Aligned_cols=301 Identities=17% Similarity=0.110 Sum_probs=219.7
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+++.|+++++.++... +..+++|++|++++|+++...+..|.++++|++|+|++|.+++..|..+..+ ++|++|++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEEC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC-CCCCEEEC
Confidence 4678888888877533 3347888888888888887777788888888888888888884444445555 48888888
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
++|.++...+..|.. +.+++++|.+.+..+..+..+++|++|++++|.+.+.. ...+++|++|++++|.++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSSCCS
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-----cccccccceeeccccccc
Confidence 888888766655544 78888888888888888888888888888888887531 133455555555555443
Q ss_pred c------------------cCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCccccc
Q 042366 154 G------------------FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLG 215 (343)
Q Consensus 154 ~------------------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 215 (343)
+ .++.. ...+|+.|+++++...... ....+++|++|++++|.+++..|..|.
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTA-------WLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccH-------HHcCCCCccEEECCCCcCCCcChhHcc
Confidence 2 12211 2345666666665432211 112378899999999999988889999
Q ss_pred CCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCccc
Q 042366 216 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDS 295 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 295 (343)
.+++|++|+|++|++.+ ++..+..+++|++|++++|++++ +|..+..+++|+.|++++|.|++. | +....
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~-------~~~~~ 339 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K-------LSTHH 339 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C-------CCTTC
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C-------chhhc
Confidence 99999999999999985 45566788999999999999984 566788899999999999999543 2 22233
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 042366 296 YFGNIHLCGEPLTMRCSNDGLPKAPPSASTDH 327 (343)
Q Consensus 296 ~~~~~~l~~np~~~~C~~~~~~~~~~~~~~~~ 327 (343)
.+..+++.+|||.|+|...|...........+
T Consensus 340 ~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371 (390)
T ss_dssp CCSEEECCSSCEEHHHHHHHTTTCCTTTBCCC
T ss_pred cCCEEEcCCCCccchhHHHHHHHHHhhccccc
Confidence 45567899999999999888766555543333
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.8e-31 Score=238.36 Aligned_cols=273 Identities=18% Similarity=0.204 Sum_probs=213.6
Q ss_pred CccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 1 NITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
+++.++++++.++.......+++++|++++|++++..+..|.++++|++|+|++|.+++..|..+..+. +|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCCEEECCCC
Confidence 367899999998865444578999999999999988888899999999999999999955577777765 8999999999
Q ss_pred cccccccccccc-cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccc--cCCCCCCccCCCCCcEEEeeCCcccccCC
Q 042366 81 SLEGHIHDTFAN-AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDG--PLCNSNITFPFQALRIIDLSHNEFTGFLP 157 (343)
Q Consensus 81 ~l~~~~~~~~~~-~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 157 (343)
.++......+.. +.+++++|.+.+..+..+..+++|++|++++|.+.. ..+..+ ..+++|++|++++|.++ .+|
T Consensus 111 ~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~-~l~ 187 (330)
T 1xku_A 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF--QGMKKLSYIRIADTNIT-TIP 187 (330)
T ss_dssp CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG--GGCTTCCEEECCSSCCC-SCC
T ss_pred cCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc--cCCCCcCEEECCCCccc-cCC
Confidence 998654444333 788888888887777778888888888888888754 233333 66788888888888876 444
Q ss_pred cccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCcc
Q 042366 158 RRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS 237 (343)
Q Consensus 158 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 237 (343)
..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..
T Consensus 188 ~~~--------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 188 QGL--------------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp SSC--------------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccc--------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 332 356889999999999888889999999999999999999888888
Q ss_pred ccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCc-cCCCCcccccCCCCCCCCCCCCC
Q 042366 238 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQ-FNTFANDSYFGNIHLCGEPLTMR 310 (343)
Q Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~~~~l~~np~~~~ 310 (343)
+..+++|++|++++|+++ .+|..+..+++|+.|++++|+|++..+.... ............+.+.+||+.+.
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 999999999999999998 6777888999999999999999665443211 10111123345667888888654
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=6.6e-32 Score=250.58 Aligned_cols=256 Identities=22% Similarity=0.212 Sum_probs=184.9
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcc
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 82 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l 82 (343)
+.++.++..++.......++++.|+|++|+++...+..|.++++|++|+|++|.+++..+..+..+ ++|++|++++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC-SSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC-ccCCEEECCCCcC
Confidence 345555555554333345667777777777776666677777777777777777763333333333 4677777777766
Q ss_pred cccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCccccc
Q 042366 83 EGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFP 162 (343)
Q Consensus 83 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 162 (343)
+. ..+..+..+++|++|++++|.+....+..+ ..+++|++|++++|...+.++...+.
T Consensus 125 ~~--------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~ 182 (440)
T 3zyj_A 125 TT--------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFE 182 (440)
T ss_dssp SS--------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred Ce--------------------eCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhh
Confidence 63 223456667888888888888776554444 66788888888875443355544333
Q ss_pred CccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccC
Q 042366 163 SMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 242 (343)
Q Consensus 163 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 242 (343)
. +++|++|++++|.++ .+| .+..+++|++|+|++|.+.+..+..|.+++
T Consensus 183 ~-----------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 183 G-----------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp T-----------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred c-----------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc
Confidence 3 567788999999988 455 477889999999999999988889999999
Q ss_pred CCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 042366 243 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGLP 317 (343)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~~ 317 (343)
+|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+. .+..+..+..+++.+|||.|+|...|+.
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~L~~Np~~CdC~l~~l~ 301 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD-----LFTPLHHLERIHLHHNPWNCNCDILWLS 301 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT-----TTSSCTTCCEEECCSSCEECSSTTHHHH
T ss_pred cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh-----HhccccCCCEEEcCCCCccCCCCchHHH
Confidence 999999999999988888899999999999999999654443 3344455566789999999999988763
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-32 Score=242.27 Aligned_cols=244 Identities=26% Similarity=0.433 Sum_probs=214.9
Q ss_pred CccEEEccCCcccc--cCCC---CCCCCcEEEccC-CcccccCCccccCCCccCeeecccccccccCCchhhcCccCccE
Q 042366 1 NITTLDLRNNRIQG--SILV---PPPSTEVFLVSN-NKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELIT 74 (343)
Q Consensus 1 ~L~~L~ls~n~l~~--~~~~---~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~ 74 (343)
++++|++++|.+.+ .++. .+++|++|++++ |++.+..|..|.++++|++|+|++|.+++.+|..+..+. +|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCCE
Confidence 47899999999987 5544 389999999995 999999999999999999999999999988998888876 9999
Q ss_pred EEcccCcccccccccccc----cEEEeccCCCCCCcCccccCCC-CcCEEEecCCcccccCCCCCCccCCCCCcEEEeeC
Q 042366 75 LHLKNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLP-VLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSH 149 (343)
Q Consensus 75 L~l~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 149 (343)
|++++|.+++..+..+.. +.+++++|.+.+..|..+..++ +|++|++++|.+.+..+..+ ..+. |++|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccEEECcC
Confidence 999999999888888776 8999999999999999999998 99999999999998777766 4555 99999999
Q ss_pred CcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCc
Q 042366 150 NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNS 229 (343)
Q Consensus 150 n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 229 (343)
|.+++..|.. +.. +++|++|++++|.+++..|. +..+++|++|+|++|.
T Consensus 207 N~l~~~~~~~-~~~-----------------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 207 NMLEGDASVL-FGS-----------------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp SEEEECCGGG-CCT-----------------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred CcccCcCCHH-Hhc-----------------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 9998654433 222 67789999999999866665 7889999999999999
Q ss_pred CccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCee
Q 042366 230 LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
+.+..|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 99899999999999999999999999888876 789999999999998433
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-31 Score=256.56 Aligned_cols=116 Identities=27% Similarity=0.389 Sum_probs=83.1
Q ss_pred HhccCeeeccCCcccccCc-ccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeE
Q 042366 193 LVMFRAMDFSSNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 271 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (343)
+++|++|++++|.+++.+| ..+..+++|++|++++|.+.+..|..+. ++|+.|++++|+++ .+|..+..+++|+.|
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL 478 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEE
T ss_pred CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEE
Confidence 4667777777777765233 3466667777777777777655444432 68888888888888 456666688999999
Q ss_pred eccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 042366 272 NLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGL 316 (343)
Q Consensus 272 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~ 316 (343)
++++|+|+ .+|.. .+.....+..+++.+|||.|+|...|.
T Consensus 479 ~L~~N~l~-~l~~~----~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 479 NVASNQLK-SVPDG----VFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp ECCSSCCC-CCCTT----STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred ECCCCCCC-CCCHH----HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 99999996 45543 244455566789999999999998766
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=2.7e-31 Score=247.49 Aligned_cols=298 Identities=18% Similarity=0.160 Sum_probs=232.4
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcc
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 82 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l 82 (343)
+.++.++++++. +|...++|++|+|++|++++..|..|.++++|++|+|++|.+.+.++...+...++|++|++++|.+
T Consensus 13 ~~~~c~~~~l~~-lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 13 YNAICINRGLHQ-VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp TEEECCSSCCSS-CCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred cccCcCCCCccc-CCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 457777887764 3446789999999999999988999999999999999999997666554444445999999999999
Q ss_pred cccccccccc----cEEEeccCCCCCCcCcc--ccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccC
Q 042366 83 EGHIHDTFAN----AIVNVENNMTSDSFPCW--LGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFL 156 (343)
Q Consensus 83 ~~~~~~~~~~----~~l~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 156 (343)
++..+..|.. +.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+ +..+++|++|++++|.+++..
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-FLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-GGGCTTCCEEECTTCCBSCCC
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-cCCCCcccEEeCCCCcccccC
Confidence 9988888876 89999999999865544 8899999999999999987655542 267899999999999998655
Q ss_pred Cccccc---------------------------------CccccccccccCcccccCC--c-------------------
Q 042366 157 PRRIFP---------------------------------SMEAMKNVDEQGRLEYMGG--A------------------- 182 (343)
Q Consensus 157 ~~~~~~---------------------------------~l~~L~~l~~~~~~~~~~~--~------------------- 182 (343)
+..+.. .+++|+.|+++++...... .
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 543211 2256777777665321000 0
Q ss_pred -------------ccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeC
Q 042366 183 -------------FYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 249 (343)
Q Consensus 183 -------------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 249 (343)
.....+.....+.|++|++++|.+++..|..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 0000000111358999999999999888999999999999999999999888999999999999999
Q ss_pred CCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCC
Q 042366 250 SFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPL 307 (343)
Q Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~ 307 (343)
++|.+++..+..+..+++|+.|++++|++++..|.. +..+..+..+++.+|.+
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS-----FLGLPNLKELALDTNQL 383 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhh-----ccccccccEEECCCCcc
Confidence 999999888899999999999999999998876653 22333344445555544
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4.5e-31 Score=236.02 Aligned_cols=270 Identities=17% Similarity=0.199 Sum_probs=185.7
Q ss_pred ccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCc
Q 042366 2 ITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 81 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~ 81 (343)
++.++++++.++.......+++++|++++|++++..+..|.++++|++|+|++|.+++..|..+..+. +|++|++++|.
T Consensus 35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~ 113 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISKNH 113 (332)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-TCCEEECCSSC
T ss_pred CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-CCCEEECCCCc
Confidence 67888888888754444477899999999999888788889999999999999998855566666664 89999999998
Q ss_pred ccccccccccc-cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccc--cCCCCCCccCCCCCcEEEeeCCcccccCCc
Q 042366 82 LEGHIHDTFAN-AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDG--PLCNSNITFPFQALRIIDLSHNEFTGFLPR 158 (343)
Q Consensus 82 l~~~~~~~~~~-~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 158 (343)
++......+.. +.+++++|.+....+..+..+++|++|++++|.+.. ..+..+ ..+ +|++|++++|.++ .+|.
T Consensus 114 l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~l~-~l~~ 189 (332)
T 2ft3_A 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAKLT-GIPK 189 (332)
T ss_dssp CCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSBCS-SCCS
T ss_pred CCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCCCCC-ccCc
Confidence 88544433322 667777777776666666677777777777776653 223332 334 6777777777665 3443
Q ss_pred ccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccc
Q 042366 159 RIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 238 (343)
Q Consensus 159 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 238 (343)
.+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+
T Consensus 190 ~~--------------------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 190 DL--------------------------------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp SS--------------------------------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred cc--------------------------------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 32 2457777788888776666777777888888888888877666677
Q ss_pred cccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCC-CcccccCCCCCCCCCCCC
Q 042366 239 ENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTF-ANDSYFGNIHLCGEPLTM 309 (343)
Q Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~-~~~~~~~~~~l~~np~~~ 309 (343)
..+++|++|++++|+++ .+|..+..+++|+.|++++|+|++..+....-..+ ........+.+.+||+.+
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 77788888888888887 56666777788888888888875544332110000 112234455677777654
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.98 E-value=2.1e-31 Score=248.10 Aligned_cols=255 Identities=19% Similarity=0.205 Sum_probs=174.3
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcc
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 82 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l 82 (343)
+.++.++..++.......+++++|+|++|+|++..+..|.++++|++|+|++|.+++..+..+..+ ++|++|++++|.+
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL-ASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc-ccCCEEECCCCcC
Confidence 345566666654333335677777777777777777777777777777777777774444444444 3777777777777
Q ss_pred cccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCccccc
Q 042366 83 EGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFP 162 (343)
Q Consensus 83 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 162 (343)
+... +..+..+++|++|++++|.+....+..+ ..+++|++|++++|...+.++...+.
T Consensus 136 ~~~~--------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 136 TVIP--------------------SGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp SBCC--------------------TTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred CccC--------------------hhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhcc
Confidence 6432 3345667788888888887775544444 66778888888774433345544333
Q ss_pred CccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccC
Q 042366 163 SMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 242 (343)
Q Consensus 163 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 242 (343)
. +++|++|++++|.+++ +| .+..+++|++|+|++|.+.+..|..|.+++
T Consensus 194 ~-----------------------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 194 G-----------------------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp T-----------------------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred C-----------------------------CCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCcc
Confidence 3 4567778888888773 34 366778888888888888877777888888
Q ss_pred CCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 042366 243 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGL 316 (343)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~ 316 (343)
+|+.|++++|++++..+..|..+++|+.|++++|+|++..+. .+..+..+..+++.+|||.|+|...|+
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD-----LFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-----SSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH-----HhccccCCCEEEccCCCcCCCCCchHH
Confidence 888888888888877777788888888888888888544333 233344455667888888888887764
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=253.29 Aligned_cols=116 Identities=28% Similarity=0.386 Sum_probs=72.1
Q ss_pred HhccCeeeccCCcccccCcc-cccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeE
Q 042366 193 LVMFRAMDFSSNRFHGEIPE-VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 271 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (343)
+++|++|++++|.+++.+|. .+..+++|++|++++|.+.+..|..+. ++|+.|++++|+++ .+|..+..+++|+.|
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 34455555555555432332 244455555555555555444333332 56777777777777 456666688888888
Q ss_pred eccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 042366 272 NLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGL 316 (343)
Q Consensus 272 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~ 316 (343)
++++|+|+ .+|.. .+..+..+..+++.+||+.|+|...|.
T Consensus 450 ~L~~N~l~-~l~~~----~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 450 NVASNQLK-SVPDG----IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp ECCSSCCC-CCCTT----TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ECCCCcCC-ccCHH----HhccCCcccEEECcCCCCcccCCchHH
Confidence 88888886 34443 244445556679999999999997666
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=1.2e-31 Score=256.61 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=102.4
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCc-cCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeE
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLT-GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 271 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (343)
+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..|..+..+++|+.|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 678999999999998888888999999999999999987 4688889999999999999999998888899999999999
Q ss_pred eccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 042366 272 NLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGL 316 (343)
Q Consensus 272 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~ 316 (343)
++++|++++..|. .+.....+..+++.+||+.|+|...|.
T Consensus 500 ~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 500 NMASNQLKSVPDG-----IFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp ECCSSCCSCCCTT-----TTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred eCCCCcCCCCCHH-----HhhcccCCcEEEecCCcccCCCcchHH
Confidence 9999999776554 234445566779999999999997543
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=7e-32 Score=259.59 Aligned_cols=297 Identities=16% Similarity=0.103 Sum_probs=218.5
Q ss_pred CccEEEccCCcccccCC---CCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSIL---VPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+++.+++++|.+....+ ..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..+..+ ++|++|++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEEC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC-CCCCEEEe
Confidence 36778888888765433 347888999999888888888888888889999999888884334334444 48899999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
++|.++...+..|.. +.|++++|.+.+..|..+..+++|++|++++|.+.+.. ...+++|++|++++|.+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCS
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCccc
Confidence 988888777666544 78888888888888888888888999999888887532 133555555555555554
Q ss_pred c------------------cCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCccccc
Q 042366 154 G------------------FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLG 215 (343)
Q Consensus 154 ~------------------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 215 (343)
+ .++.. ...+|+.|+++++..... .....+++|++|++++|.+++..|..|.
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~-------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-------AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC-------hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 2 11111 123455566555533221 1122378899999999999988899999
Q ss_pred CCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCccc
Q 042366 216 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDS 295 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 295 (343)
.+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.|++. | +....
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-------~~~~~ 345 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-------LSTHH 345 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-------CCTTC
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-------hhhcC
Confidence 99999999999999985 4666677899999999999998 4677788899999999999999654 2 22233
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 042366 296 YFGNIHLCGEPLTMRCSNDGLPKAPPSA 323 (343)
Q Consensus 296 ~~~~~~l~~np~~~~C~~~~~~~~~~~~ 323 (343)
.+..+++.+|||.|+|...|........
T Consensus 346 ~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 373 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNSLRALFRNVARPA 373 (597)
T ss_dssp CCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred CCCEEEeeCCCCCChhHHHHHHHHhhhc
Confidence 4556789999999999887776554443
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.5e-31 Score=233.99 Aligned_cols=256 Identities=20% Similarity=0.235 Sum_probs=201.2
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccc--cCCchhhcCccCccEEEcccC
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSG--TIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~p~~~~~~~~~L~~L~l~~n 80 (343)
+.++++++.++.......+++++|++++|+++...+..|.++++|++|+|++|.++. ..+..+..+. +|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCC
Confidence 568888888886555557899999999999997766778999999999999999972 2256666664 8999999999
Q ss_pred cccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCC-CCCCccCCCCCcEEEeeCCcccccCCcc
Q 042366 81 SLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLC-NSNITFPFQALRIIDLSHNEFTGFLPRR 159 (343)
Q Consensus 81 ~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 159 (343)
.++ .+|..+..+++|++|++++|.+.+..+ ..+ ..+++|++|++++|.+.+..+.
T Consensus 89 ~i~---------------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~- 144 (306)
T 2z66_A 89 GVI---------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYLDISHTHTRVAFNG- 144 (306)
T ss_dssp SEE---------------------EEEEEEETCTTCCEEECTTSEEESSTTTTTT--TTCTTCCEEECTTSCCEECSTT-
T ss_pred ccc---------------------cChhhcCCCCCCCEEECCCCcccccccchhh--hhccCCCEEECCCCcCCccchh-
Confidence 987 334556778999999999999886543 233 6789999999999998754433
Q ss_pred cccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccc-cCcccccCCCCCCEEEccCCcCccCCCccc
Q 042366 160 IFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHG-EIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 238 (343)
Q Consensus 160 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 238 (343)
.+.. +++|++|++++|.+++ ..|..+..+++|++|++++|.+.+..|..+
T Consensus 145 ~~~~-----------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 145 IFNG-----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp TTTT-----------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred hccc-----------------------------CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence 2222 5677888888888875 578888888999999999999988778888
Q ss_pred cccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcc-cccCCCCCCCCCCCCCCCCCCCC
Q 042366 239 ENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFAND-SYFGNIHLCGEPLTMRCSNDGLP 317 (343)
Q Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~-~~~~~~~l~~np~~~~C~~~~~~ 317 (343)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|.. +... ..+..+++.+||+.|+|...|.+
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~~~L~~L~L~~N~~~~~c~~~~~~ 270 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-----LQHFPSSLAFLNLTQNDFACTCEHQSFL 270 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS-----CCCCCTTCCEEECTTCCEECSGGGHHHH
T ss_pred cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH-----HHhhhccCCEEEccCCCeecccChHHHH
Confidence 88899999999999998777777888899999999999997766653 2222 24456688899999999865443
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.5e-31 Score=254.94 Aligned_cols=294 Identities=18% Similarity=0.270 Sum_probs=195.7
Q ss_pred CccEEEccCCcccccCCCC---CCCCcEEEccCCc-ccc-cCCccccCC------CccCeeecccccccccCCc--hhhc
Q 042366 1 NITTLDLRNNRIQGSILVP---PPSTEVFLVSNNK-LSG-RIPPSICSL------SFLQYLSLSDNNLSGTIPP--CLGN 67 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~p~--~~~~ 67 (343)
+|++|++++|.+.+.+|.. +++|++|++++|+ +++ .+|..++.+ ++|++|+|++|.++ .+|. .+..
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence 4677888888877655543 6777888888887 776 666666655 77777777777777 6776 5665
Q ss_pred CccCccEEEcccCcccccccccccc----cEEEeccCCCCCCcCccccCCCC-cCEEEecCCc-----------------
Q 042366 68 FSTELITLHLKNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPV-LKILVLRSNR----------------- 125 (343)
Q Consensus 68 ~~~~L~~L~l~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~----------------- 125 (343)
+. +|++|++++|.+++..| .+.. +.+++++|.+. .+|..+..+++ |++|++++|.
T Consensus 329 l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 329 MK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp CT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred CC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 54 67777777777775555 4443 45555555554 44444444444 5555555554
Q ss_pred --------ccccCCCCCC-----ccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccc-cCCcccCcch-hH
Q 042366 126 --------FDGPLCNSNI-----TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGGAFYDESI-TQ 190 (343)
Q Consensus 126 --------l~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~-~~ 190 (343)
+.+..+..+. ...+++|++|++++|.++ .+|..++..+++|+.|+++++... +....+.... ..
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 4443333321 003446666666666666 556555666677777777665432 1111111100 00
Q ss_pred HHHhccCeeeccCCcccccCccccc--CCCCCCEEEccCCcCccCCCccccccCCCCeEeC------CCCcCccccchhh
Q 042366 191 KILVMFRAMDFSSNRFHGEIPEVLG--NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL------SFNKLDGRIPEQL 262 (343)
Q Consensus 191 ~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~ 262 (343)
..+++|++|++++|.++ .+|..+. .+++|++|+|++|.+.+ +|..+..+++|++|+| ++|++.+.+|..+
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 11338999999999998 6777776 89999999999999996 7888889999999999 4577888889999
Q ss_pred hcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCC
Q 042366 263 LSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTM 309 (343)
Q Consensus 263 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~ 309 (343)
..+++|+.|++++|+| +.+|.... ..+..+++.+||+.|
T Consensus 563 ~~l~~L~~L~Ls~N~l-~~ip~~~~-------~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDI-RKVNEKIT-------PNISVLDIKDNPNIS 601 (636)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCC-------TTCCEEECCSCTTCE
T ss_pred hcCCCCCEEECCCCcC-CccCHhHh-------CcCCEEECcCCCCcc
Confidence 9999999999999999 77776411 244556788887765
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=2.6e-30 Score=249.23 Aligned_cols=150 Identities=14% Similarity=0.020 Sum_probs=100.2
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
++++|++++|.+++.. +..+++|++|+|++|+++++.|.+|.++++|++|+|++|.+++..|..+..+. +|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-ALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT-TCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc-cccEeec
Confidence 3678888888887643 44578888888888888877788888888888888888888755565665554 7888888
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCc--EEEeeCCc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALR--IIDLSHNE 151 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~--~L~l~~n~ 151 (343)
++|.+++..+..+.. +.+++++|.+.+.....+..+++|++|++++|.+.+..+..+ ..+++|+ .|++++|.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM--SSLQQATNLSLNLNGND 190 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH--HTTTTCCSEEEECTTCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh--hhhcccceeEEecCCCc
Confidence 888887765555554 677777777776443334446777777777776654333222 3344444 44444444
Q ss_pred cc
Q 042366 152 FT 153 (343)
Q Consensus 152 l~ 153 (343)
+.
T Consensus 191 l~ 192 (606)
T 3t6q_A 191 IA 192 (606)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1e-30 Score=249.13 Aligned_cols=130 Identities=22% Similarity=0.282 Sum_probs=95.8
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCch-hhcCccCccEEE
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPC-LGNFSTELITLH 76 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~-~~~~~~~L~~L~ 76 (343)
+|++|++++|.+++.. +..+++|++|++++|++++..|.+|.++++|++|+|++|.++ .++.. +..+ ++|++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l-~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPL-SSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTC-TTCCEEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccC-CCCcEEE
Confidence 4789999999988654 455889999999999999888888999999999999999998 44444 5555 4899999
Q ss_pred cccCccccc-ccccccc----cEEEeccCCCCCCcC-ccccCCCCcCEEEecCCcccccCCC
Q 042366 77 LKNNSLEGH-IHDTFAN----AIVNVENNMTSDSFP-CWLGSLPVLKILVLRSNRFDGPLCN 132 (343)
Q Consensus 77 l~~n~l~~~-~~~~~~~----~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~ 132 (343)
+++|.+++. .+..+.. +.+++++|.+.+.++ ..+..+++|++|++++|.+.+..+.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 999988763 3344443 677777776433333 4566677777777777766654443
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=8.3e-31 Score=261.54 Aligned_cols=271 Identities=20% Similarity=0.194 Sum_probs=205.9
Q ss_pred CCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccc----cEEE
Q 042366 21 PSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFAN----AIVN 96 (343)
Q Consensus 21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----~~l~ 96 (343)
++|+.|++++|.+++..+..|..+++|+.|+|++|.+++..|..+..+ ++|++|++++|.+++..+..|.. +.++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 689999999999998888899999999999999999985556556555 48999999999998887777766 8899
Q ss_pred eccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcc-----------------
Q 042366 97 VENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRR----------------- 159 (343)
Q Consensus 97 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----------------- 159 (343)
+++|.+....+..+..+++|++|++++|.+.+. ..+++|+.|++++|.++ .+|..
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-------~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-------HFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-------SSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSS
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-------cCCCCcchhccCCCCcc-cccccccccceeecccCccccC
Confidence 999999888888888899999999999988742 22556666666666665 33321
Q ss_pred ----cccCccccccccccCcccccC-Cc-ccCcchhHHHHhccCeeeccCCccc-----ccCcccccCCCCCCEEEccCC
Q 042366 160 ----IFPSMEAMKNVDEQGRLEYMG-GA-FYDESITQKILVMFRAMDFSSNRFH-----GEIPEVLGNFKSLKVLNLSHN 228 (343)
Q Consensus 160 ----~~~~l~~L~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n 228 (343)
.+..+++|+.|++++|..... .. ... .+++|++|++++|.++ +..+..|..+++|++|+|++|
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPS------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC------SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccc------cCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 233566777777776643211 11 111 1567888888888876 344566778888999999999
Q ss_pred cCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCC
Q 042366 229 SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLT 308 (343)
Q Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~ 308 (343)
.+++..+..|.++++|+.|+|++|++++..+..+. ++|+.|++++|+|++..|.. +. .+..+.+.+|||.
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-----~~---~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-----FV---SLSVLDITHNKFI 560 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-----CS---SCCEEEEEEECCC
T ss_pred cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH-----hC---CcCEEEecCCCcc
Confidence 98888888888899999999999999876665554 78999999999998877753 22 2345688899999
Q ss_pred CCCCCCCC
Q 042366 309 MRCSNDGL 316 (343)
Q Consensus 309 ~~C~~~~~ 316 (343)
|+|...|.
T Consensus 561 C~c~~~~f 568 (844)
T 3j0a_A 561 CECELSTF 568 (844)
T ss_dssp CSSSCCSH
T ss_pred cccccHHH
Confidence 99987653
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.7e-31 Score=254.83 Aligned_cols=253 Identities=19% Similarity=0.236 Sum_probs=159.3
Q ss_pred CCCCcEEEccCCccccc-----------------CCcccc--CCCccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 20 PPSTEVFLVSNNKLSGR-----------------IPPSIC--SLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
+++|++|+|++|++++. +|..++ ++++|++|+|++|.+.+.+|..+..+. +|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS-SCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC-CCCEEECcCC
Confidence 66667777777776653 666666 677777777777766666666666654 6777777777
Q ss_pred c-ccc-ccccccc---------c-cEEEeccCCCCCCcCc--cccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEE
Q 042366 81 S-LEG-HIHDTFA---------N-AIVNVENNMTSDSFPC--WLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIID 146 (343)
Q Consensus 81 ~-l~~-~~~~~~~---------~-~~l~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 146 (343)
+ +++ ..|..+. . +.+++++|.+. .+|. .++.+++|++|++++|.+.+..+ .+ ..+++|++|+
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~--~~l~~L~~L~ 359 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF--GSEIKLASLN 359 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC--EEEEEESEEE
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh--CCCCCCCEEE
Confidence 6 665 4444332 1 66777777776 5565 66667777777777777765555 33 5566777777
Q ss_pred eeCCcccccCCcccccCccc-cccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCccccc-------CCC
Q 042366 147 LSHNEFTGFLPRRIFPSMEA-MKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLG-------NFK 218 (343)
Q Consensus 147 l~~n~l~~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-------~l~ 218 (343)
+++|.++ .+|.. +..+++ |+.|+++++....-...+. ...+++|++|++++|.+++..|..+. .++
T Consensus 360 L~~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 360 LAYNQIT-EIPAN-FCGFTEQVENLSFAHNKLKYIPNIFD----AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp CCSSEEE-ECCTT-SEEECTTCCEEECCSSCCSSCCSCCC----TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCCCccc-cccHh-hhhhcccCcEEEccCCcCcccchhhh----hcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 7777766 55554 455566 7777776654321111111 00133677777777777777776666 666
Q ss_pred CCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCC-------cCCeEeccCCcCeecCCC
Q 042366 219 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT-------ALALLNLSHSRLWGRIPQ 284 (343)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~l~~N~l~~~~p~ 284 (343)
+|++|+|++|.+....+..+..+++|++|+|++|+++...+..+.... +|+.|++++|+|+ .+|.
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 777788888777754444556677788888888877743333333322 7788888888875 4443
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.1e-29 Score=251.15 Aligned_cols=290 Identities=15% Similarity=0.221 Sum_probs=189.8
Q ss_pred CccEEEccCCcccccCCCC---CCCCcEEEccCCc-ccc-cCCccccCCC-------ccCeeecccccccccCCc--hhh
Q 042366 1 NITTLDLRNNRIQGSILVP---PPSTEVFLVSNNK-LSG-RIPPSICSLS-------FLQYLSLSDNNLSGTIPP--CLG 66 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~i~~~~p~--~~~ 66 (343)
+|++|++++|.+.+.+|.. +++|++|+|++|+ +++ .+|..|.++. +|++|+|++|.++ .+|. .+.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 4667777777766655542 6677777777776 665 5555444333 6777777777776 6666 555
Q ss_pred cCccCccEEEcccCcccccccccccc----cEEEeccCCCCCCcCccccCCCC-cCEEEecCCcccccCCCCCCcc----
Q 042366 67 NFSTELITLHLKNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPV-LKILVLRSNRFDGPLCNSNITF---- 137 (343)
Q Consensus 67 ~~~~~L~~L~l~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~---- 137 (343)
.+. +|++|++++|.++ ..| .|.. +.|++++|.+. .+|..+..+++ |+.|++++|.+. ..|..+...
T Consensus 571 ~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 571 KMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp TCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred cCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 554 6777777777666 333 4433 56666666666 55555555665 666666666555 222222111
Q ss_pred -------------------------CCCCCcEEEeeCCcccccCCcccccCccccccccccCcccc-cCCcccCcch-hH
Q 042366 138 -------------------------PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGGAFYDESI-TQ 190 (343)
Q Consensus 138 -------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~-~~ 190 (343)
.+++|+.|++++|.++ .+|..++..+++|+.|++++|... +....+.... ..
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 2335666666666666 566666666777777777776432 2221111100 00
Q ss_pred HHHhccCeeeccCCcccccCccccc--CCCCCCEEEccCCcCccCCCccccccCCCCeEeCCC------CcCccccchhh
Q 042366 191 KILVMFRAMDFSSNRFHGEIPEVLG--NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF------NKLDGRIPEQL 262 (343)
Q Consensus 191 ~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~ 262 (343)
..+++|++|+|++|.++ .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..+
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 12448999999999998 6777776 88999999999999996 688888999999999976 77888889899
Q ss_pred hcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCC
Q 042366 263 LSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPL 307 (343)
Q Consensus 263 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~ 307 (343)
..+++|+.|+|++|+| +.+|.... . .+..+++.+||+
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l~-~------~L~~LdLs~N~l 839 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKLT-P------QLYILDIADNPN 839 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCC-S------SSCEEECCSCTT
T ss_pred hcCCCCCEEECCCCCC-CccCHhhc-C------CCCEEECCCCCC
Confidence 9999999999999999 77777521 1 334456666665
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1e-28 Score=220.45 Aligned_cols=239 Identities=18% Similarity=0.208 Sum_probs=183.9
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
++++|++++|.+++.. +..+++|++|++++|++++..|..|.++++|++|+|++|.++ .+|..++ ++|++|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEEC
Confidence 4789999999998743 456999999999999999888999999999999999999998 8887765 48999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCC--CcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSD--SFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNE 151 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 151 (343)
++|.+++..+..|.. +.+++++|.+.. ..+..+..+++|++|++++|.+... +... .++|++|++++|.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~----~~~L~~L~l~~n~ 203 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGL----PPSLTELHLDGNK 203 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC----CTTCSEEECTTSC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Cccc----cccCCEEECCCCc
Confidence 999999888776665 899999999964 6778899999999999999998852 3322 3799999999999
Q ss_pred ccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCc
Q 042366 152 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLT 231 (343)
Q Consensus 152 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 231 (343)
+++..+. .+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 204 l~~~~~~-~~~~-----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 204 ITKVDAA-SLKG-----------------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CCEECTG-GGTT-----------------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCccCHH-HhcC-----------------------------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 9854443 3444 445666667777666555556666677777777777766
Q ss_pred cCCCccccccCCCCeEeCCCCcCccccchhhhc------CCcCCeEeccCCcCe
Q 042366 232 GNIPVSFENMTALESLDLSFNKLDGRIPEQLLS------VTALALLNLSHSRLW 279 (343)
Q Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~N~l~ 279 (343)
.+|..+..+++|++|++++|.+++..+..|.. ...++.+++++|.+.
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 55556666667777777777776555444432 245666777777663
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.4e-29 Score=247.58 Aligned_cols=264 Identities=18% Similarity=0.230 Sum_probs=185.0
Q ss_pred CccEEEccCCccccc-----------------CCC-----CCCCCcEEEccCCcccccCCccccCCCccCeeeccccc-c
Q 042366 1 NITTLDLRNNRIQGS-----------------ILV-----PPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNN-L 57 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~-----------------~~~-----~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i 57 (343)
+|++|++++|.+++. +|. .+++|++|+|++|++.+.+|..|.++++|++|+|++|. +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 589999999999982 443 47899999999999999999999999999999999998 9
Q ss_pred cc-cCCchhhcCc------cCccEEEcccCcccccccc--cccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCC
Q 042366 58 SG-TIPPCLGNFS------TELITLHLKNNSLEGHIHD--TFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSN 124 (343)
Q Consensus 58 ~~-~~p~~~~~~~------~~L~~L~l~~n~l~~~~~~--~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 124 (343)
++ .+|..+..+. ++|++|++++|.++ ..|. .+.. +.|++++|.+. .+| .+..+++|+.|++++|
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence 87 7888776552 48999999999999 5555 5655 89999999999 777 8899999999999999
Q ss_pred cccccCCCCCCccCCCC-CcEEEeeCCcccccCCcccccCcc--ccccccccCcccccCCcccCc---------------
Q 042366 125 RFDGPLCNSNITFPFQA-LRIIDLSHNEFTGFLPRRIFPSME--AMKNVDEQGRLEYMGGAFYDE--------------- 186 (343)
Q Consensus 125 ~l~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~l~--~L~~l~~~~~~~~~~~~~~~~--------------- 186 (343)
.+. ..+..+ ..+++ |++|++++|.++ .+|.. +..+. +|+.|++++|........+..
T Consensus 606 ~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 606 QIE-EIPEDF--CAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CCS-CCCTTS--CEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred ccc-cchHHH--hhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 998 555555 67888 999999999998 67754 44443 488888887743211000000
Q ss_pred ------chhH---HHHhccCeeeccCCcccccCcccccC--------CCCCCEEEccCCcCccCCCcccc--ccCCCCeE
Q 042366 187 ------SITQ---KILVMFRAMDFSSNRFHGEIPEVLGN--------FKSLKVLNLSHNSLTGNIPVSFE--NMTALESL 247 (343)
Q Consensus 187 ------~~~~---~~~~~L~~L~Ls~n~l~~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L 247 (343)
.++. ..+++|++|+|++|.++ .+|..+.. +++|++|+|++|++. .+|..+. .+++|+.|
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred cCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence 0111 11345555555555555 33322221 115556666666555 4444444 55566666
Q ss_pred eCCCCcCccccchhhhcCCcCCeEeccC
Q 042366 248 DLSFNKLDGRIPEQLLSVTALALLNLSH 275 (343)
Q Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 275 (343)
+|++|++++ +|..+..+++|+.|++++
T Consensus 759 ~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp ECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred EeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 666666654 455555556666665544
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.7e-28 Score=220.60 Aligned_cols=259 Identities=19% Similarity=0.237 Sum_probs=152.8
Q ss_pred CccEEEccCCcccccC-CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 1 NITTLDLRNNRIQGSI-LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
+|+.|+++++.+.... +..+++|++|++++|+++...+ |.++++|++|++++|.++ .++ .+..+ ++|++|++++
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~~l-~~L~~L~l~~ 119 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQNL-TNLRELYLNE 119 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTC-TTCSEEECTT
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHcCC-CcCCEEECcC
Confidence 4677788777776422 3347778888888877774433 777777888888877776 444 34444 3777777777
Q ss_pred Ccccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccccc
Q 042366 80 NSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGF 155 (343)
Q Consensus 80 n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 155 (343)
|.+++..+ +.. +.+++++|......+. +..+++|++|++++|.+.+..+ ...+++|++|++++|.+..
T Consensus 120 n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~- 191 (347)
T 4fmz_A 120 DNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIED- 191 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCC-
T ss_pred CcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCcccc-
Confidence 77765543 222 6666666654443333 5556666666666666554222 2445556666665555542
Q ss_pred CCc--------------------ccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCccccc
Q 042366 156 LPR--------------------RIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLG 215 (343)
Q Consensus 156 ~~~--------------------~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 215 (343)
++. ..+..+++|+.|+++++....... ...+++|++|++++|.+++. ..+.
T Consensus 192 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 192 ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-------LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-------hhcCCCCCEEECCCCccCCC--hhHh
Confidence 221 003344444444444442211111 11255666666666666532 3456
Q ss_pred CCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCC
Q 042366 216 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIP 283 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 283 (343)
.+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|
T Consensus 263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 666777777777766643 345666777777777777766666667777777777777777755443
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.4e-29 Score=219.00 Aligned_cols=228 Identities=21% Similarity=0.201 Sum_probs=175.3
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCc-
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS- 81 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~- 81 (343)
+.++.+++.++.......+++++|++++|++++..+..|.++++|++|+|++|.+++..|..+..+. +|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCC
Confidence 4688888888765555578999999999999988888899999999999999999855566666664 89999999997
Q ss_pred ccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccc
Q 042366 82 LEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 161 (343)
Q Consensus 82 l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 161 (343)
++.. .+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++ .++...+
T Consensus 93 l~~~--------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~ 149 (285)
T 1ozn_A 93 LRSV--------------------DPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTF 149 (285)
T ss_dssp CCCC--------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred cccc--------------------CHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccc-ccCHhHh
Confidence 6643 24456678888888888888876555554 66788888888888887 3333323
Q ss_pred cCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCcccccc
Q 042366 162 PSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 241 (343)
Q Consensus 162 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 241 (343)
.. +++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+
T Consensus 150 ~~-----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 150 RD-----------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp TT-----------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cc-----------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 22 4567788888888876666667788888888888888887778888888
Q ss_pred CCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCC
Q 042366 242 TALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIP 283 (343)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 283 (343)
++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 888888888888887666677888888888888888865444
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-28 Score=220.08 Aligned_cols=238 Identities=20% Similarity=0.259 Sum_probs=174.3
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+++.|++++|.+.+.. +..+++|++|++++|++++..|..|.++++|++|+|++|.++ .+|..++ ++|++|++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEEC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEEC
Confidence 4789999999998653 556999999999999999988999999999999999999998 8887766 48999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCC--CcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSD--SFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNE 151 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 151 (343)
++|.++...+..|.. +.+++++|.+.. ..+..+..+ +|++|++++|.+.+ .+..+ .++|++|++++|.
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~----~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL----PETLNELHLDHNK 204 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS----CSSCSCCBCCSSC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc----cCCCCEEECCCCc
Confidence 999999887777765 899999999964 677788877 99999999999986 33332 3789999999999
Q ss_pred ccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCc
Q 042366 152 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLT 231 (343)
Q Consensus 152 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 231 (343)
+++..+ ..+..+++ |++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 205 i~~~~~-~~l~~l~~-----------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 205 IQAIEL-EDLLRYSK-----------------------------LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp CCCCCT-TSSTTCTT-----------------------------CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCccCH-HHhcCCCC-----------------------------CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 984433 33444444 555555555555444445555555666666665555
Q ss_pred cCCCccccccCCCCeEeCCCCcCccccchhhhc------CCcCCeEeccCCcCe
Q 042366 232 GNIPVSFENMTALESLDLSFNKLDGRIPEQLLS------VTALALLNLSHSRLW 279 (343)
Q Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~N~l~ 279 (343)
.+|..+..+++|+.|++++|++++..+..|.. ...|+.|++++|.+.
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred -ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 44444555555666666666555444444432 234555555555553
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=249.11 Aligned_cols=279 Identities=18% Similarity=0.188 Sum_probs=170.0
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccc-cCCccccCCCccCeeecccccccccCCchhhcCccCccEEE
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSG-RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLH 76 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~ 76 (343)
++++||+++|.+++.. +..+++|++|+|++|.+.+ +.|.+|.++++|++|+|++|.+++..|..+..+. +|++|+
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ 103 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-HLFELR 103 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS-SCCCEE
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc-ccCEee
Confidence 3667777777776532 4447777777777774433 3466677777777777777777755565555554 677777
Q ss_pred cccCccccccccc--ccc----cEEEeccCCCCCCcC-ccccCCCCcCEEEecCCcccccCCCCCCccCC--CCCcEEEe
Q 042366 77 LKNNSLEGHIHDT--FAN----AIVNVENNMTSDSFP-CWLGSLPVLKILVLRSNRFDGPLCNSNITFPF--QALRIIDL 147 (343)
Q Consensus 77 l~~n~l~~~~~~~--~~~----~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--~~L~~L~l 147 (343)
+++|.+++..+.. |.. +.|++++|.+.+..+ ..++.+++|++|++++|.+.+..+..+ ..+ ++|+.|++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l--~~l~~~~L~~L~L 181 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL--EPLQGKTLSFFSL 181 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG--HHHHHCSSCCCEE
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc--ccccCCccceEEC
Confidence 7777776543332 333 677777777766544 456777777777777777665444333 222 45666666
Q ss_pred eCCcccccCCcccccCcc------ccccccccCcccccC--Cccc-------------------------------Ccch
Q 042366 148 SHNEFTGFLPRRIFPSME------AMKNVDEQGRLEYMG--GAFY-------------------------------DESI 188 (343)
Q Consensus 148 ~~n~l~~~~~~~~~~~l~------~L~~l~~~~~~~~~~--~~~~-------------------------------~~~~ 188 (343)
++|.+.+..+.. +..+. .|+.++++++..... ..+. ...+
T Consensus 182 ~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 182 AANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp CCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 666555444332 11122 256666655421100 0000 0000
Q ss_pred hHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcC
Q 042366 189 TQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 268 (343)
Q Consensus 189 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (343)
.....++|++|++++|.+.+..+..|..+++|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 00012567777777777776667777777777777777777776667777777777777777777776666677777777
Q ss_pred CeEeccCCcCeecCC
Q 042366 269 ALLNLSHSRLWGRIP 283 (343)
Q Consensus 269 ~~L~l~~N~l~~~~p 283 (343)
+.|++++|.+.+..+
T Consensus 341 ~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQD 355 (844)
T ss_dssp CEEECCSCCCCCCCS
T ss_pred CEEECCCCCCCccCh
Confidence 777777777754433
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.4e-29 Score=226.76 Aligned_cols=271 Identities=15% Similarity=0.168 Sum_probs=153.6
Q ss_pred EEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCccc
Q 042366 4 TLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE 83 (343)
Q Consensus 4 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~ 83 (343)
..+++++.++.......++|++|++++|++++..+..|.++++|++|+|++|.+++..+..+..+. +|++|++++|.++
T Consensus 35 ~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCS
T ss_pred EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCC
Confidence 356777777754444467888888888888877777888888888888888888844455565554 8888888888888
Q ss_pred ccccccccc----cEEEeccCCCCCCcC-ccccCCCCcCEEEecCCc-ccccCCCCCCccCCCCCcEEEeeCCcccccCC
Q 042366 84 GHIHDTFAN----AIVNVENNMTSDSFP-CWLGSLPVLKILVLRSNR-FDGPLCNSNITFPFQALRIIDLSHNEFTGFLP 157 (343)
Q Consensus 84 ~~~~~~~~~----~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 157 (343)
+..+..|.. +.+++++|.+....+ ..+..+++|++|++++|. +....+..+ ..+++|++|++++|.+++..|
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCCEECT
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCCCCCCEEECCCCCcCccCH
Confidence 655544433 556666665554333 345556666666666652 333333333 445566666666666553333
Q ss_pred cccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCcc
Q 042366 158 RRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS 237 (343)
Q Consensus 158 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 237 (343)
.. +..+ ++|++|++++|.++...+..+..+++|++|++++|.+.+..+..
T Consensus 192 ~~-l~~l-----------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 192 KS-LKSI-----------------------------QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp TT-TTTC-----------------------------SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred HH-Hhcc-----------------------------ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 22 3333 45555555555554322223334555666666666555433322
Q ss_pred cc---ccCCCCeEeCCCCcCcc----ccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCC
Q 042366 238 FE---NMTALESLDLSFNKLDG----RIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMR 310 (343)
Q Consensus 238 ~~---~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~ 310 (343)
+. ....++.++++++.+++ .+|..+..+++|+.|++++|+++ .+|.. .+.....+..+++.+||+.|+
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~----~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDG----IFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTT----TTTTCTTCCEEECCSSCBCCC
T ss_pred cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHH----HHhcCCCCCEEEeeCCCccCc
Confidence 21 23445555555555544 13444555556666666666654 23321 122223334445555666666
Q ss_pred CC
Q 042366 311 CS 312 (343)
Q Consensus 311 C~ 312 (343)
|.
T Consensus 317 ~~ 318 (353)
T 2z80_A 317 CP 318 (353)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.7e-29 Score=245.36 Aligned_cols=147 Identities=19% Similarity=0.151 Sum_probs=75.2
Q ss_pred EEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCccc
Q 042366 4 TLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE 83 (343)
Q Consensus 4 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~ 83 (343)
.+|+++++++.......+++++|+|++|.+++..+..|.++++|++|+|++|.+++..|..+..+. +|++|++++|.++
T Consensus 8 ~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELS 86 (680)
T ss_dssp EEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT-TCCEEECCSSCCC
T ss_pred eeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhccc-CcCEEECCCCccC
Confidence 345555555432222245555555555555555445555555555555555555533344444443 5555555555555
Q ss_pred ccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 84 GHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 84 ~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
...+.+|.. +.+++++|.+.+..+..++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.++
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ--VQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS--SCCTTCCEEECCSSCCC
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh--cccccCCEEEccCCccc
Confidence 444444443 555555555555555555555555555555555554333333 34555555555555554
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-28 Score=224.70 Aligned_cols=259 Identities=22% Similarity=0.205 Sum_probs=206.6
Q ss_pred CccEEEccCCccccc---CCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGS---ILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~---~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+|++|++++|.+++. .+..+++|++|++++|++++..|..|.++++|++|+|++|.++ .+|..++...++|++|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence 589999999999864 3456999999999999999888899999999999999999998 888876554569999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEec-------------------CCcccccCCCCC
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLR-------------------SNRFDGPLCNSN 134 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~-------------------~n~l~~~~~~~~ 134 (343)
++|.+++..+..+.. +.+++++|.+.+... ..+++|+.|+++ +|.+.... .
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~-~-- 222 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-G-- 222 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG---GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE-C--
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCcccc---ccccccceeecccccccccCCCCcceEEECCCCeeeecc-c--
Confidence 999999888877765 899999999887533 334455555554 44444321 1
Q ss_pred CccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccC-CcccCcchhHHHHhccCeeeccCCcccccCccc
Q 042366 135 ITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG-GAFYDESITQKILVMFRAMDFSSNRFHGEIPEV 213 (343)
Q Consensus 135 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 213 (343)
...++|+.|++++|.+++. ..+..+++|+.|+++++..... ...+ ..+++|++|++++|.+++ .|..
T Consensus 223 --~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~-~~~~ 290 (390)
T 3o6n_A 223 --PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNNRLVA-LNLY 290 (390)
T ss_dssp --CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECCSSCCCE-EECS
T ss_pred --cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHc------cccccCCEEECCCCcCcc-cCcc
Confidence 2246899999999999843 3478889999999998753321 1111 126899999999999984 5666
Q ss_pred ccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecC
Q 042366 214 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRI 282 (343)
Q Consensus 214 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 282 (343)
+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++. + +..+++|+.|++++|++.+..
T Consensus 291 ~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 778999999999999999 5666788899999999999999864 3 677899999999999997643
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.8e-28 Score=236.45 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=112.7
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
++++|++++|.+++.. +..+++|++|++++|+++++.|.+|.++++|++|+|++|.+++..|..+..+. +|++|++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L 111 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVA 111 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT-TCCEEEC
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc-cCCEEEc
Confidence 4789999999998643 55699999999999999998899999999999999999999955577777775 8999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCC-CcCccccCCCCcCEEEecCCccccc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSD-SFPCWLGSLPVLKILVLRSNRFDGP 129 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~ 129 (343)
++|.+++..+..+.. +.+++++|.+.+ .+|..++.+++|++|++++|.+.+.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999999887777766 899999999987 5699999999999999999987654
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.4e-28 Score=235.09 Aligned_cols=150 Identities=23% Similarity=0.188 Sum_probs=121.3
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcc
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 82 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l 82 (343)
+++++++|++++......+++++|++++|++++..+..|.++++|++|+|++|.+++..|..+..+. +|++|++++|.+
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l 112 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-DLEYLDVSHNRL 112 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-TCCEEECTTSCC
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-CCCEEECCCCcC
Confidence 6899999999974443478999999999999988889999999999999999999955566666665 899999999999
Q ss_pred cccccccccc-cEEEeccCCCCCC-cCccccCCCCcCEEEecCCcccccCCCCCCccCCCCC--cEEEeeCCcc--cccC
Q 042366 83 EGHIHDTFAN-AIVNVENNMTSDS-FPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQAL--RIIDLSHNEF--TGFL 156 (343)
Q Consensus 83 ~~~~~~~~~~-~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L--~~L~l~~n~l--~~~~ 156 (343)
+......+.. +.|++++|.+.+. .|..++.+++|++|++++|.+.+. .+ ..+++| ++|++++|.+ ++..
T Consensus 113 ~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~--~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 113 QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DL--LPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp CEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TT--GGGTTSCEEEEEEEESSCCCCSSS
T ss_pred CccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---ch--hhhhhceeeEEEeecccccccccC
Confidence 8655553333 8999999999874 568899999999999999998752 22 445555 9999999988 5444
Q ss_pred Cc
Q 042366 157 PR 158 (343)
Q Consensus 157 ~~ 158 (343)
|.
T Consensus 188 ~~ 189 (562)
T 3a79_B 188 TE 189 (562)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.1e-27 Score=223.06 Aligned_cols=228 Identities=22% Similarity=0.231 Sum_probs=189.7
Q ss_pred CccEEEccCCccccc---CCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGS---ILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~---~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+++.|++++|.+++. .+..+++|++|+|++|+++++.+..|.++++|++|+|++|.++ .+|...+...++|++|++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEEC
Confidence 478999999999864 3556999999999999999999999999999999999999999 677665555569999999
Q ss_pred ccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccC-CCCCCccCCCCCcEEEeeCCcccccC
Q 042366 78 KNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPL-CNSNITFPFQALRIIDLSHNEFTGFL 156 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~ 156 (343)
++|.++... +..+..+++|+.|++++|...+.. ...+ ..+++|++|++++|.++ .+
T Consensus 155 ~~N~l~~~~--------------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l~-~~ 211 (452)
T 3zyi_A 155 RNNPIESIP--------------------SYAFNRVPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLNLGMCNIK-DM 211 (452)
T ss_dssp CSCCCCEEC--------------------TTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCTTCCEEECTTSCCS-SC
T ss_pred CCCCcceeC--------------------HhHHhcCCcccEEeCCCCCCccccChhhc--cCCCCCCEEECCCCccc-cc
Confidence 999998533 335667899999999985443333 3333 67899999999999887 33
Q ss_pred CcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCc
Q 042366 157 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV 236 (343)
Q Consensus 157 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 236 (343)
|. +.. +++|++|++++|.+++..|..|..+++|++|+|++|.+.+..+.
T Consensus 212 ~~--~~~-----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 212 PN--LTP-----------------------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp CC--CTT-----------------------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred cc--ccc-----------------------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 32 111 56789999999999988889999999999999999999988888
Q ss_pred cccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCC
Q 042366 237 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIP 283 (343)
Q Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 283 (343)
.|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+...
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 89999999999999999998777788889999999999998866543
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=235.29 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=84.5
Q ss_pred CccEEEccCCccccc---CCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGS---ILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~---~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
++++|++++|.+++. .+..+++|++|++++|+++++.+..|.++++|++|+|++|.+++..|..+..+ ++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-SSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc-cccccccc
Confidence 367778888777653 34457777777777777777777777777777777777777773333444444 36777777
Q ss_pred ccCcccccccccccc----cEEEeccCCCCC-CcCccccCCCCcCEEEecCCccc
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSD-SFPCWLGSLPVLKILVLRSNRFD 127 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~ 127 (343)
++|.++...+..+.. +.+++++|.+.+ .+|..+..+++|++|++++|.+.
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 777776655544444 677777777665 35666666777777777666543
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4.2e-28 Score=233.26 Aligned_cols=287 Identities=21% Similarity=0.173 Sum_probs=219.4
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+|++|++++|.+++.. +..+++|++|+|++|.+++..|..|+++++|++|+|++|.++ .+|..++...++|++|++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEe
Confidence 5899999999998754 455999999999999999988889999999999999999999 777776554569999999
Q ss_pred ccCcccccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCC--------------CCCccCC
Q 042366 78 KNNSLEGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCN--------------SNITFPF 139 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------~~~~~~~ 139 (343)
++|.+++..+..|.. +.|++++|.+.+.... .+++|+.|++++|.+.+.... .+.....
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG---GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh---hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 999999988877766 8999999998875433 345555555555544331000 0001123
Q ss_pred CCCcEEEeeCCcccccCCcccccCccccccccccCcccccC-CcccCcchhHHHHhccCeeeccCCcccccCcccccCCC
Q 042366 140 QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG-GAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFK 218 (343)
Q Consensus 140 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 218 (343)
++|+.|++++|.+++. ..+..+++|+.|+++++..... ...+ ..+++|++|+|++|.+++ +|..+..++
T Consensus 232 ~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 232 VELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp SCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred CCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh------cCccCCCEEECCCCCCCC-CCcccccCC
Confidence 6899999999999853 4477899999999998754321 1111 127899999999999985 576777899
Q ss_pred CCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccC
Q 042366 219 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFG 298 (343)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~ 298 (343)
+|+.|+|++|.+. .+|..+..+++|+.|+|++|.+++.. +..+++|+.|++++|.+.+.... ..+..+....+.+
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~ 376 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDD 376 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCC
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhcccc
Confidence 9999999999999 57777889999999999999998652 66788999999999999775432 2344455555556
Q ss_pred CCCCCCCC
Q 042366 299 NIHLCGEP 306 (343)
Q Consensus 299 ~~~l~~np 306 (343)
+...|+.+
T Consensus 377 ~~~~C~~~ 384 (597)
T 3oja_B 377 ADQHCKID 384 (597)
T ss_dssp CCCCCCTT
T ss_pred ccccCCcc
Confidence 66666653
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=8.9e-28 Score=224.41 Aligned_cols=256 Identities=22% Similarity=0.320 Sum_probs=149.7
Q ss_pred CccEEEccCCcccccC-CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 1 NITTLDLRNNRIQGSI-LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
+|++|++++|.+++.. +..+++|++|++++|.+++..+ |.++++|++|+|++|.++ .++. +..+ ++|++|++++
T Consensus 69 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~-~~~l-~~L~~L~l~~ 143 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP-LKNL-TNLNRLELSS 143 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GTTC-TTCSEEEEEE
T ss_pred CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-CChH-HcCC-CCCCEEECCC
Confidence 3666777777665432 4446667777777776664433 666677777777777666 4443 4443 3666666666
Q ss_pred Ccccccccc-------------------cccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCc
Q 042366 80 NSLEGHIHD-------------------TFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNIT 136 (343)
Q Consensus 80 n~l~~~~~~-------------------~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 136 (343)
|.+++...- .+.. +.+++++|.+.+. ..+..+++|++|++++|.+.+..+ .
T Consensus 144 n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~ 217 (466)
T 1o6v_A 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----L 217 (466)
T ss_dssp EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----G
T ss_pred CccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc----c
Confidence 665543210 0111 5566666655543 224555666666666665554322 1
Q ss_pred cCCCCCcEEEeeCCccc----------------------ccCCcccccCccccccccccCcccccCCcccCcchhHHHHh
Q 042366 137 FPFQALRIIDLSHNEFT----------------------GFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILV 194 (343)
Q Consensus 137 ~~~~~L~~L~l~~n~l~----------------------~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (343)
..+++|++|++++|.++ +..+ +..+++|+.|+++++....... ...++
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-------~~~l~ 287 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP-------LAGLT 287 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG-------GTTCT
T ss_pred cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc-------ccCCC
Confidence 33445555555555444 2211 3444445555444442211111 12256
Q ss_pred ccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEecc
Q 042366 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 274 (343)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 274 (343)
+|++|++++|.+++..+ +..+++|++|++++|.+.+..| +..+++|+.|++++|.+++. ..+..+++|+.|+++
T Consensus 288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 77777777777764433 6677788888888887776554 66778888888888888754 467788888888888
Q ss_pred CCcCeecCC
Q 042366 275 HSRLWGRIP 283 (343)
Q Consensus 275 ~N~l~~~~p 283 (343)
+|++++..|
T Consensus 362 ~n~l~~~~~ 370 (466)
T 1o6v_A 362 HNQISDLTP 370 (466)
T ss_dssp SSCCCBCGG
T ss_pred CCccCccch
Confidence 888877665
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.8e-28 Score=214.50 Aligned_cols=230 Identities=23% Similarity=0.293 Sum_probs=188.7
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCccccc--CCccccCCCccCeeecccccccccCCchhhcCccCccEE
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGR--IPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITL 75 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L 75 (343)
+|++|++++|.++... +..+++|++|++++|+++.. .+..+.++++|++|+|++|.++ .+|..+..+. +|++|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~-~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE-QLEHL 106 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCT-TCCEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCC-CCCEE
Confidence 4789999999998533 55699999999999999843 3677888999999999999998 7887777765 99999
Q ss_pred EcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccc-
Q 042366 76 HLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTG- 154 (343)
Q Consensus 76 ~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~- 154 (343)
++++|.+++..+ ...+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+
T Consensus 107 ~l~~n~l~~~~~-------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 107 DFQHSNLKQMSE-------------------FSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp ECTTSEEESSTT-------------------TTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGG
T ss_pred ECCCCccccccc-------------------chhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccc
Confidence 999999985322 1346678999999999999887666655 678899999999998875
Q ss_pred cCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCC
Q 042366 155 FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI 234 (343)
Q Consensus 155 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 234 (343)
..|.. +.. +++|++|++++|.+++..|..+..+++|++|++++|.+.+..
T Consensus 166 ~~~~~-~~~-----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 166 FLPDI-FTE-----------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp EECSC-CTT-----------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred cchhH-Hhh-----------------------------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 23332 222 567888999999998777888889999999999999998777
Q ss_pred CccccccCCCCeEeCCCCcCccccchhhhcCC-cCCeEeccCCcCeecCC
Q 042366 235 PVSFENMTALESLDLSFNKLDGRIPEQLLSVT-ALALLNLSHSRLWGRIP 283 (343)
Q Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p 283 (343)
+..+..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+++..+
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 77888899999999999999988888888874 89999999999976543
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.1e-27 Score=213.57 Aligned_cols=227 Identities=21% Similarity=0.258 Sum_probs=135.7
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
..+++.|+|++|+++ .+|..+.++++|++|+|++|.++ .+|..+..+. +|++|++++|.++ .
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~-------------- 141 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-A-------------- 141 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-C--------------
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-c--------------
Confidence 467788888888877 55666777888888888888887 7777776665 7888888888776 2
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCcccccCCCCCC-------ccCCCCCcEEEeeCCcccccCCcccccCccccccccc
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNI-------TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE 172 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~ 172 (343)
+|..+..+++|++|++++|.+.+..+..+. +..+++|++|++++|.++ .+|.. +..+++|+.|++
T Consensus 142 ------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L 213 (328)
T 4fcg_A 142 ------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKI 213 (328)
T ss_dssp ------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEE
T ss_pred ------CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-hcCCCCCCEEEc
Confidence 233344445555555555444443333321 112445555555555544 33332 222222222222
Q ss_pred cCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCC
Q 042366 173 QGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 252 (343)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 252 (343)
+++........ ...+++|++|++++|.+.+..|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|
T Consensus 214 ~~N~l~~l~~~------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 214 RNSPLSALGPA------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp ESSCCCCCCGG------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred cCCCCCcCchh------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 22211100000 011456677777777776667777777777777777777766667777777777777777777
Q ss_pred cCccccchhhhcCCcCCeEeccCCcC
Q 042366 253 KLDGRIPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 253 ~l~~~~~~~~~~l~~L~~L~l~~N~l 278 (343)
.+.+.+|..+..+++|+.+++..+.+
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CchhhccHHHhhccCceEEeCCHHHH
Confidence 77767777777777777777766655
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=227.02 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=108.7
Q ss_pred CCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccc--cCCcccccCccccccccccCccccc--CCcccCcc
Q 042366 112 SLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTG--FLPRRIFPSMEAMKNVDEQGRLEYM--GGAFYDES 187 (343)
Q Consensus 112 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~l~~~~~~~~~--~~~~~~~~ 187 (343)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++ .+| ..+..+++|+.|+++++.... ....+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--- 395 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKGDC--- 395 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGCSC---
T ss_pred hCCcccEEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECCCCcCCcccccchh---
Confidence 34445555555555544333333 445555555555555542 111 224455566666655553321 11111
Q ss_pred hhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCc
Q 042366 188 ITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 267 (343)
Q Consensus 188 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (343)
..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++
T Consensus 396 ---~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 396 ---SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp ---CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ---ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 1157999999999999877777654 79999999999999 67777779999999999999999644445889999
Q ss_pred CCeEeccCCcCeecCC
Q 042366 268 LALLNLSHSRLWGRIP 283 (343)
Q Consensus 268 L~~L~l~~N~l~~~~p 283 (343)
|+.|++++|++++..+
T Consensus 470 L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred ccEEECcCCCCcccCC
Confidence 9999999999987655
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=221.14 Aligned_cols=227 Identities=22% Similarity=0.252 Sum_probs=189.3
Q ss_pred CccEEEccCCccccc---CCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGS---ILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~---~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+++.|++++|.+++. .+..+++|++|+|++|+++.+.+..|.++++|++|+|++|.++ .++...+...++|++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeC
Confidence 478999999999864 3556999999999999999988899999999999999999999 677655554569999999
Q ss_pred ccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccC-CCCCCccCCCCCcEEEeeCCcccccC
Q 042366 78 KNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPL-CNSNITFPFQALRIIDLSHNEFTGFL 156 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~ 156 (343)
++|.++... +..|..+++|++|++++|...+.. +..+ ..+++|++|++++|.++ .+
T Consensus 144 ~~N~i~~~~--------------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 144 RNNPIESIP--------------------SYAFNRIPSLRRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp CSCCCCEEC--------------------TTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCSSCCEEECTTSCCS-SC
T ss_pred CCCcccccC--------------------HHHhhhCcccCEeCCCCCCCcceeCcchh--hcccccCeecCCCCcCc-cc
Confidence 999998533 335667899999999985544333 3334 67899999999999887 44
Q ss_pred CcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCc
Q 042366 157 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV 236 (343)
Q Consensus 157 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 236 (343)
|. +.. +++|++|++++|.+++..|..|..+++|++|+|++|.+.+..+.
T Consensus 201 ~~--~~~-----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 249 (440)
T 3zyj_A 201 PN--LTP-----------------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249 (440)
T ss_dssp CC--CTT-----------------------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred cc--cCC-----------------------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence 42 111 56789999999999988889999999999999999999988888
Q ss_pred cccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecC
Q 042366 237 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRI 282 (343)
Q Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 282 (343)
.|..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+..
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 9999999999999999999877788888999999999999986644
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=221.61 Aligned_cols=250 Identities=18% Similarity=0.150 Sum_probs=201.5
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+|++|++++|.+++.. +..+++|++|++++|++++..+..|.++++|++|+|++|.++ .+|...+...++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEEC
Confidence 4889999999998643 456999999999999999988899999999999999999999 777774444459999999
Q ss_pred ccCccccccc-ccccc----cEEEeccCC-CCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCc
Q 042366 78 KNNSLEGHIH-DTFAN----AIVNVENNM-TSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNE 151 (343)
Q Consensus 78 ~~n~l~~~~~-~~~~~----~~l~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 151 (343)
++|+++.... ..+.. +.+++++|. +....+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSC
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCc
Confidence 9999997665 45554 899999994 676677889999999999999999998767766 778999999999998
Q ss_pred ccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCccccc---CCCCCCEEEccCC
Q 042366 152 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLG---NFKSLKVLNLSHN 228 (343)
Q Consensus 152 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~n 228 (343)
+. .++..++. .+++|++|++++|.+++..+..+. ....++.++++++
T Consensus 210 l~-~~~~~~~~-----------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 210 HI-LLLEIFVD-----------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp ST-THHHHHHH-----------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred cc-cchhhhhh-----------------------------hcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 86 34433221 156788888888888765544332 4567888999988
Q ss_pred cCcc----CCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCC
Q 042366 229 SLTG----NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIP 283 (343)
Q Consensus 229 ~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 283 (343)
.+.+ .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|++.+..|
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 8875 356677888999999999999985444446889999999999999987665
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.6e-27 Score=212.81 Aligned_cols=253 Identities=23% Similarity=0.287 Sum_probs=182.5
Q ss_pred CccEEEccCCcccccC-CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 1 NITTLDLRNNRIQGSI-LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
+|++|++++|.+++.. +..+++|++|++++|+++.. +.|.++++|++|++++|.++ .++. +..+ ++|++|++++
T Consensus 67 ~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~-~~~~-~~~l-~~L~~L~l~~ 141 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNIS-DISP-LANL-TKMYSLNLGA 141 (347)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCC-CCGG-GTTC-TTCCEEECTT
T ss_pred CccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCccc-Cchh-hccC-CceeEEECCC
Confidence 4788888888887533 55688888888888888853 35888888888888888887 5544 4444 3677777777
Q ss_pred Ccccccccccccc--------------------------cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCC
Q 042366 80 NSLEGHIHDTFAN--------------------------AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNS 133 (343)
Q Consensus 80 n~l~~~~~~~~~~--------------------------~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 133 (343)
|......+. +.. +.+++++|.+.+..+ +..+++|+.|++++|.+.+..+
T Consensus 142 n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-- 216 (347)
T 4fmz_A 142 NHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-- 216 (347)
T ss_dssp CTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--
Confidence 743332221 221 445555555444332 4445555555555555543222
Q ss_pred CCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCccc
Q 042366 134 NITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEV 213 (343)
Q Consensus 134 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 213 (343)
...+++|++|++++|.++. .+. +..+++|+.++++++.......+ ..+++|++|++++|.+++. ..
T Consensus 217 --~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~~-------~~l~~L~~L~l~~n~l~~~--~~ 282 (347)
T 4fmz_A 217 --VANMTRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTNQISDINAV-------KDLTKLKMLNVGSNQISDI--SV 282 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGGG-------TTCTTCCEEECCSSCCCCC--GG
T ss_pred --hhcCCcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCCccCCChhH-------hcCCCcCEEEccCCccCCC--hh
Confidence 3668899999999999984 333 77899999999998754322111 2278999999999999854 45
Q ss_pred ccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCe
Q 042366 214 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLW 279 (343)
Q Consensus 214 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 279 (343)
+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..| +..+++|+.|++++|.|+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8899999999999999998888899999999999999999997655 888999999999999984
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.1e-28 Score=210.25 Aligned_cols=232 Identities=18% Similarity=0.204 Sum_probs=185.0
Q ss_pred cEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCC
Q 042366 24 EVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTS 103 (343)
Q Consensus 24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~ 103 (343)
++++.+++.++. +|..+ .++|++|+|++|.+++..+..+..+ ++|++|++++|.+++..
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~----------------- 72 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARID----------------- 72 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEEC-----------------
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCCccceeC-----------------
Confidence 678888888884 45433 4689999999999984333445554 48999999999887533
Q ss_pred CCcCccccCCCCcCEEEecCCc-ccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCc
Q 042366 104 DSFPCWLGSLPVLKILVLRSNR-FDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGA 182 (343)
Q Consensus 104 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 182 (343)
+..+..+++|++|++++|. +....+..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 73 ---~~~~~~l~~L~~L~l~~n~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~~------------------- 127 (285)
T 1ozn_A 73 ---AAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHLDRCGLQELGP-GLFRG------------------- 127 (285)
T ss_dssp ---TTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEECTTSCCCCCCT-TTTTT-------------------
T ss_pred ---HhhcCCccCCCEEeCCCCCCccccCHHHh--cCCcCCCEEECCCCcCCEECH-hHhhC-------------------
Confidence 4556778999999999997 766545555 678999999999999884333 22322
Q ss_pred ccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhh
Q 042366 183 FYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 262 (343)
Q Consensus 183 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (343)
+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+
T Consensus 128 ----------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 128 ----------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred ----------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence 5678999999999997777789999999999999999997777789999999999999999998889999
Q ss_pred hcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 042366 263 LSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGL 316 (343)
Q Consensus 263 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~ 316 (343)
..+++|+.|++++|.+++..+. .+.....+..+++.+||+.|+|...|.
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~~~~~~~ 246 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTE-----ALAPLRALQYLRLNDNPWVCDCRARPL 246 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHH-----HHTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred cCcccccEeeCCCCcCCcCCHH-----HcccCcccCEEeccCCCccCCCCcHHH
Confidence 9999999999999999764332 233444556679999999999998544
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.3e-27 Score=227.74 Aligned_cols=153 Identities=14% Similarity=0.082 Sum_probs=128.0
Q ss_pred EEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCccc
Q 042366 4 TLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE 83 (343)
Q Consensus 4 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~ 83 (343)
+.|.+++.++.......++|++|++++|++++..|..|.++++|++|+|++|.+++..|..+..+. +|++|++++|.++
T Consensus 9 ~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHLS 87 (549)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCC
T ss_pred eEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCCCccC
Confidence 357778888764444578999999999999998899999999999999999999965566676665 9999999999999
Q ss_pred ccccccccc----cEEEeccCCCCCC-cCccccCCCCcCEEEecCCcccccCC-CCCCccCCCCCcEEEeeCCcccccCC
Q 042366 84 GHIHDTFAN----AIVNVENNMTSDS-FPCWLGSLPVLKILVLRSNRFDGPLC-NSNITFPFQALRIIDLSHNEFTGFLP 157 (343)
Q Consensus 84 ~~~~~~~~~----~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~ 157 (343)
+..+..|.. +.+++++|.+.+. .|..++.+++|++|++++|.+.+..+ ..+ ..+++|++|++++|.+++..|
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF--AGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCCEECT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh--hcccccCeeeccCCcccccCh
Confidence 988877766 8999999999874 66789999999999999998444333 344 778999999999999987666
Q ss_pred cc
Q 042366 158 RR 159 (343)
Q Consensus 158 ~~ 159 (343)
..
T Consensus 166 ~~ 167 (549)
T 2z81_A 166 QS 167 (549)
T ss_dssp TT
T ss_pred hh
Confidence 54
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.7e-26 Score=215.76 Aligned_cols=251 Identities=23% Similarity=0.307 Sum_probs=156.4
Q ss_pred CccEEEccCCcccccC-CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 1 NITTLDLRNNRIQGSI-LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
+++.|+++++.+.... +..+++|++|++++|.+++..+ |.++++|++|++++|.++ .++. +..+. +|++|++++
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~-~L~~L~L~~ 121 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LANLT-NLTGLTLFN 121 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GTTCT-TCCEEECCS
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hcCCC-CCCEEECCC
Confidence 4789999999987522 3449999999999999996644 999999999999999998 5554 66654 999999999
Q ss_pred Ccccccccccccc----cEEEeccCCCCCCcC-------------------ccccCCCCcCEEEecCCcccccCCCCCCc
Q 042366 80 NSLEGHIHDTFAN----AIVNVENNMTSDSFP-------------------CWLGSLPVLKILVLRSNRFDGPLCNSNIT 136 (343)
Q Consensus 80 n~l~~~~~~~~~~----~~l~l~~n~~~~~~~-------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 136 (343)
|.+++..+ +.. +.+++++|.+.+... ..+..+++|++|++++|.+.+.. . .
T Consensus 122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~--l 195 (466)
T 1o6v_A 122 NQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--V--L 195 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG--G--G
T ss_pred CCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh--h--h
Confidence 99987654 433 889999888776321 12455667777777777766431 1 2
Q ss_pred cCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccC
Q 042366 137 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGN 216 (343)
Q Consensus 137 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 216 (343)
..+++|++|++++|.+.+..+ +..+++|+.|+++++.....+.+ ..+++|++|++++|.+++..+ +..
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l-------~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTL-------ASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGG-------GGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred ccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhh-------hcCCCCCEEECCCCccccchh--hhc
Confidence 567788888888887764433 45567777777766543211110 114455555555555543322 444
Q ss_pred CCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcC
Q 042366 217 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 217 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 278 (343)
+++|++|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence 4555555555554443222 3344444444444444443221 33344444444444444
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.8e-26 Score=221.87 Aligned_cols=139 Identities=22% Similarity=0.312 Sum_probs=107.8
Q ss_pred CCCCCcEEEeeCCcccccCCcccccCccccccccccCcccc--cCCcccCcchhHHHHhccCeeeccCCcccccCccccc
Q 042366 138 PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY--MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLG 215 (343)
Q Consensus 138 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 215 (343)
.+.+++.++++.|.+.. .+...+..+..++.++++++... .....+ ..+++|++|+|++|.+++..|..|.
T Consensus 443 ~l~~l~~l~ls~n~l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~------~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------TELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp TCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCC------TTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccc-ccccccccchhhhhhhhhhcccccccCchhh------hhccccCEEECCCCccCCcChHHHc
Confidence 34455555555555552 33344556666666666665321 111111 1268999999999999988899999
Q ss_pred CCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcC-CcCCeEeccCCcCeecCC
Q 042366 216 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALALLNLSHSRLWGRIP 283 (343)
Q Consensus 216 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p 283 (343)
.+++|++|+|++|+|++..+..|+++++|+.|+|++|+|++..|..+..+ ++|+.|++++|++.+...
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999998889999999999999999999999999999888 689999999999987664
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-28 Score=218.85 Aligned_cols=253 Identities=18% Similarity=0.151 Sum_probs=151.5
Q ss_pred EEEccCCcccc---cCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 4 TLDLRNNRIQG---SILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 4 ~L~ls~n~l~~---~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
..+++.+.+.. ..+..+++|++|+|++|++++..|..|.++++|++|+|++|.+++ .++ +..+ ++|++|++++|
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l-~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESL-STLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTC-TTCCEEECCSS
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhc-CCCCEEECcCC
Confidence 34445555432 344557799999999999998888899999999999999999984 333 5555 48999999999
Q ss_pred cccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCccc
Q 042366 81 SLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 160 (343)
Q Consensus 81 ~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 160 (343)
.+++..+. -.-+.+++++|.+.+..+.. +++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+
T Consensus 91 ~l~~l~~~-~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 91 YVQELLVG-PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEEEEEC-TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ccccccCC-CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHH
Confidence 98864422 12267777777776654433 4667777777777766444444 556777777777777765444444
Q ss_pred ccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccc
Q 042366 161 FPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN 240 (343)
Q Consensus 161 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 240 (343)
+..+++|+.|+++++......... .+++|++|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~~~~-------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVKGQV-------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCC-------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred hhccCcCCEEECCCCcCccccccc-------ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 344455555555444321110000 03445555555555552 2223445555555555555555 23444455
Q ss_pred cCCCCeEeCCCCcCc-cccchhhhcCCcCCeEecc
Q 042366 241 MTALESLDLSFNKLD-GRIPEQLLSVTALALLNLS 274 (343)
Q Consensus 241 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~ 274 (343)
+++|+.|++++|.+. +..+.++..++.|+.++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 555555555555554 3344445555555555554
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.5e-26 Score=206.17 Aligned_cols=218 Identities=15% Similarity=0.159 Sum_probs=167.3
Q ss_pred CccEEEccCCcccccCCCC---CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSILVP---PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+++.|++++|.++. ++.. +++|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..+..+. +|++|++
T Consensus 82 ~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN-RLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT-TCCEEEE
T ss_pred ceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCc-CCCEEEC
Confidence 47899999999984 3333 899999999999999 88899999999999999999999 8999888886 8999999
Q ss_pred ccCcccccccccccc-------------cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcE
Q 042366 78 KNNSLEGHIHDTFAN-------------AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRI 144 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~-------------~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 144 (343)
++|++.+..|..+.. +.|++++|.+. .+|..+..+++|++|++++|.+.+. +..+ ..+++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l--~~l~~L~~ 233 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAI--HHLPKLEE 233 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGG--GGCTTCCE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhh--ccCCCCCE
Confidence 999888777765531 55555555555 4444455555555555555555532 2222 44555555
Q ss_pred EEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEE
Q 042366 145 IDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLN 224 (343)
Q Consensus 145 L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 224 (343)
|++++|.+.+.+|..+ . .+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 234 L~Ls~n~~~~~~p~~~-~-----------------------------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIF-G-----------------------------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp EECTTCTTCCBCCCCT-T-----------------------------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred EECcCCcchhhhHHHh-c-----------------------------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 5555555544444321 1 167899999999999989999999999999999
Q ss_pred ccCCcCccCCCccccccCCCCeEeCCCCcCcc
Q 042366 225 LSHNSLTGNIPVSFENMTALESLDLSFNKLDG 256 (343)
Q Consensus 225 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (343)
|++|.+.+.+|..++.+++++.+++..+.+..
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 99999999999999999999999999877753
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.1e-29 Score=220.22 Aligned_cols=245 Identities=23% Similarity=0.257 Sum_probs=143.5
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeeccccccc-ccCCchhh-------cCccCccEEEcccCcccccccccc-
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLS-GTIPPCLG-------NFSTELITLHLKNNSLEGHIHDTF- 90 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~p~~~~-------~~~~~L~~L~l~~n~l~~~~~~~~- 90 (343)
.++|+.+++++|++ ..|..+... |+.|+|++|.++ ..+|..+. .+. +|++|++++|.+++..+..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHH
Confidence 45567777777777 445544433 677777777763 23554443 343 67777777777776555544
Q ss_pred -cc----cEEEeccCCCCCCcCccccCC-----CCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccC--Cc
Q 042366 91 -AN----AIVNVENNMTSDSFPCWLGSL-----PVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFL--PR 158 (343)
Q Consensus 91 -~~----~~l~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~ 158 (343)
.. +.|++++|.+.+. |..+..+ ++|++|++++|++.+..+..+ ..+++|++|++++|.+.+.+ +.
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcchHHHH
Confidence 22 6777777777766 6656555 788888888888876555555 66778888888888765431 11
Q ss_pred c-cccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCc-ccccCCCCCCEEEccCCcCccCCCc
Q 042366 159 R-IFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGNIPV 236 (343)
Q Consensus 159 ~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~ 236 (343)
. .+..+++|+.|+++++.....+... ......+++|++|++++|.+++..| ..+..+++|++|+|++|.++ .+|.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVC--SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHH--HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHH--HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 1 1244555555555544221000000 0000113566667777766665443 34445666777777777666 4444
Q ss_pred cccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCe
Q 042366 237 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLW 279 (343)
Q Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 279 (343)
.+. ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 443 5666677777766654 43 666666667777666664
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=2.8e-26 Score=200.77 Aligned_cols=85 Identities=26% Similarity=0.223 Sum_probs=42.1
Q ss_pred hccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEec
Q 042366 194 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 273 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 273 (343)
++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 34445555555554444444555555555555555555444444445555555555555555433334444555555555
Q ss_pred cCCcC
Q 042366 274 SHSRL 278 (343)
Q Consensus 274 ~~N~l 278 (343)
++|+|
T Consensus 180 ~~N~l 184 (290)
T 1p9a_G 180 QENSL 184 (290)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 55555
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.9e-25 Score=206.41 Aligned_cols=210 Identities=19% Similarity=0.191 Sum_probs=152.1
Q ss_pred CccEEEccCCcccccC-CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 1 NITTLDLRNNRIQGSI-LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
+|++|++++|.+++.. +..+++|++|++++|++++. + ++++++|++|+|++|.++ .++ +..+ ++|++|++++
T Consensus 43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--~~~l-~~L~~L~L~~ 115 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--VTPL-TKLTYLNCDT 115 (457)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--CTTC-TTCCEEECCS
T ss_pred CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--cCCC-CcCCEEECCC
Confidence 4788999999988642 23388999999999999865 3 888999999999999998 454 5555 4899999999
Q ss_pred Ccccccccccccc-cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCc
Q 042366 80 NSLEGHIHDTFAN-AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPR 158 (343)
Q Consensus 80 n~l~~~~~~~~~~-~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 158 (343)
|.+++.....+.. +.+++++|.+.+. + ++.+++|++|++++|...+.. . +..+++|++|++++|.+++ +|
T Consensus 116 N~l~~l~~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~--~~~l~~L~~L~ls~n~l~~-l~- 186 (457)
T 3bz5_A 116 NKLTKLDVSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--D--VTPQTQLTTLDCSFNKITE-LD- 186 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--C--CTTCTTCCEEECCSSCCCC-CC-
T ss_pred CcCCeecCCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--c--cccCCcCCEEECCCCccce-ec-
Confidence 9988753222222 8899999988874 2 677888888888888554433 2 2567888888888888874 44
Q ss_pred ccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccc
Q 042366 159 RIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 238 (343)
Q Consensus 159 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 238 (343)
+..+++|+.++++++...... + ..+++|++|++++|.+++ +| +..+++|+.|++++|.+++..+..+
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~-l-------~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLD-L-------NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC-C-------TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred --cccCCCCCEEECcCCcCCeec-c-------ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 567778888887776432211 1 125778888888888875 44 6677888888888888776554444
Q ss_pred c
Q 042366 239 E 239 (343)
Q Consensus 239 ~ 239 (343)
.
T Consensus 254 ~ 254 (457)
T 3bz5_A 254 S 254 (457)
T ss_dssp T
T ss_pred C
Confidence 3
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-27 Score=221.53 Aligned_cols=219 Identities=22% Similarity=0.150 Sum_probs=161.3
Q ss_pred CCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEec
Q 042366 19 PPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVE 98 (343)
Q Consensus 19 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~ 98 (343)
.+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..| +..+ ++|++|++++|.+++..+. -.-+.|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l~~~-~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQELLVG-PSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEEEEC-TTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCCCCC-CCcCEEECc
Confidence 35689999999999998888999999999999999999985444 5555 4899999999999865432 122566666
Q ss_pred cCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccc
Q 042366 99 NNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 178 (343)
Q Consensus 99 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~ 178 (343)
+|.+.+..+.. +++|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..|..+...
T Consensus 108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~--------------- 167 (487)
T 3oja_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS--------------- 167 (487)
T ss_dssp SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG---------------
T ss_pred CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh---------------
Confidence 66666554432 3566666666666665444443 456666666666666664444332211
Q ss_pred cCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCcccc
Q 042366 179 MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 258 (343)
Q Consensus 179 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (343)
+++|++|+|++|.+++..+ +..+++|++|+|++|.+++.++ .+..+++|+.|+|++|.+++ +
T Consensus 168 --------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 168 --------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp --------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-E
T ss_pred --------------CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-c
Confidence 5678889999998885532 3358899999999999986444 48888999999999999985 5
Q ss_pred chhhhcCCcCCeEeccCCcCe
Q 042366 259 PEQLLSVTALALLNLSHSRLW 279 (343)
Q Consensus 259 ~~~~~~l~~L~~L~l~~N~l~ 279 (343)
|..+..+++|+.|++++|.+.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBC
T ss_pred chhhccCCCCCEEEcCCCCCc
Confidence 667888889999999999886
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=7e-26 Score=197.01 Aligned_cols=228 Identities=22% Similarity=0.181 Sum_probs=164.7
Q ss_pred EEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCccc
Q 042366 4 TLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE 83 (343)
Q Consensus 4 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~ 83 (343)
.++.++.++........+++++|++++|++++..+..|.++++|++|+|++|.+++..+..+..+ ++|++|++++|.++
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCCCccC
Confidence 34555555554333335679999999999998877788999999999999999983333345444 48999999999887
Q ss_pred ccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccccc-CCccccc
Q 042366 84 GHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGF-LPRRIFP 162 (343)
Q Consensus 84 ~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~ 162 (343)
+.. +..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++.. +|.. +.
T Consensus 90 ~~~--------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~ 146 (276)
T 2z62_A 90 SLA--------------------LGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FS 146 (276)
T ss_dssp EEC--------------------TTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GG
T ss_pred ccC--------------------hhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hc
Confidence 533 3446668889999999888876544444 6788888888888887642 2322 11
Q ss_pred CccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCC----EEEccCCcCccCCCccc
Q 042366 163 SMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLK----VLNLSHNSLTGNIPVSF 238 (343)
Q Consensus 163 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~~~~~ 238 (343)
. +++|++|++++|.+++..+..+..+++|+ +|++++|.+.+..+..+
T Consensus 147 ~-----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~ 197 (276)
T 2z62_A 147 N-----------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (276)
T ss_dssp G-----------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred c-----------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence 1 56678888888888866666666666665 88888888886655555
Q ss_pred cccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCC
Q 042366 239 ENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQG 285 (343)
Q Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 285 (343)
.. .+|++|++++|++++..+..+..+++|+.|++++|++++..|..
T Consensus 198 ~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 198 KE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 43 47888888888888766666778888888888888887766644
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.3e-27 Score=220.56 Aligned_cols=231 Identities=21% Similarity=0.193 Sum_probs=196.2
Q ss_pred CccEEEccCCcccccC---CCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEc
Q 042366 1 NITTLDLRNNRIQGSI---LVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 77 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l 77 (343)
+|+.|++++|.+++.. +..+++|++|+|++|.+++..| |.++++|++|+|++|.++ .+|.. ++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~-----~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEEC-----TTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCC-----CCcCEEEC
Confidence 4889999999998744 4569999999999999997665 999999999999999998 44432 48999999
Q ss_pred ccCcccccccccccc-cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccC
Q 042366 78 KNNSLEGHIHDTFAN-AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFL 156 (343)
Q Consensus 78 ~~n~l~~~~~~~~~~-~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 156 (343)
++|.+++..+..+.. +.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. ..+++|++|++++|.+++..
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEEE
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcccccc
Confidence 999999888777666 8999999999999999999999999999999999986655541 36899999999999998542
Q ss_pred CcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCc
Q 042366 157 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV 236 (343)
Q Consensus 157 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 236 (343)
+.. . +++|++|+|++|.+++..| .+..+++|+.|+|++|.+.+ +|.
T Consensus 186 ~~~---~-----------------------------l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~ 231 (487)
T 3oja_A 186 GQV---V-----------------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEK 231 (487)
T ss_dssp CCC---C-----------------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECT
T ss_pred ccc---c-----------------------------CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cch
Confidence 211 0 5778999999999996544 58899999999999999995 677
Q ss_pred cccccCCCCeEeCCCCcCc-cccchhhhcCCcCCeEecc
Q 042366 237 SFENMTALESLDLSFNKLD-GRIPEQLLSVTALALLNLS 274 (343)
Q Consensus 237 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~ 274 (343)
.+..+++|+.|++++|.+. +..|.++..++.|+.++++
T Consensus 232 ~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7889999999999999998 5567788888888888875
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-25 Score=193.44 Aligned_cols=207 Identities=25% Similarity=0.297 Sum_probs=135.2
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCc-hhhcCccCccEEEcccCcccccccccccccEEEec
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPP-CLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVE 98 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~ 98 (343)
..+.+++++++++++. +|..+. ++|++|+|++|.++ .++. .+..+ ++|++|++++|.++...
T Consensus 15 ~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l-~~L~~L~l~~n~l~~i~------------ 77 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRL-TKLRLLYLNDNKLQTLP------------ 77 (270)
T ss_dssp ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSC-TTCCEEECCSSCCSCCC------------
T ss_pred CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCC-CCCCEEECCCCccCeeC------------
Confidence 3456777787777773 444443 56777788877777 4444 34444 47777777777776322
Q ss_pred cCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccc
Q 042366 99 NNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 178 (343)
Q Consensus 99 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~ 178 (343)
+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++. ++...+..
T Consensus 78 --------~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~--------------- 131 (270)
T 2o6q_A 78 --------AGIFKELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLKS-LPPRVFDS--------------- 131 (270)
T ss_dssp --------TTTTSSCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCCC-CCTTTTTT---------------
T ss_pred --------hhhhcCCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccCe-eCHHHhCc---------------
Confidence 2334567777777777777765444333 556777777777777763 33222222
Q ss_pred cCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCcccc
Q 042366 179 MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 258 (343)
Q Consensus 179 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (343)
+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..
T Consensus 132 --------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 132 --------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 456677777777777555556677777777777777777666666777777777777777777655
Q ss_pred chhhhcCCcCCeEeccCCcCeecCC
Q 042366 259 PEQLLSVTALALLNLSHSRLWGRIP 283 (343)
Q Consensus 259 ~~~~~~l~~L~~L~l~~N~l~~~~p 283 (343)
+..+..+++|+.|++++|.+.+..+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HHHhccccCCCEEEecCCCeeCCCc
Confidence 5566677777777777777755443
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.2e-25 Score=206.15 Aligned_cols=259 Identities=16% Similarity=0.102 Sum_probs=152.0
Q ss_pred CccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 1 NITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
+|++|++++|.+++..+..+++|++|++++|++++. + |+++++|++|++++|.++ .+| +..+. +|++|++++|
T Consensus 65 ~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~-~l~--~~~l~-~L~~L~l~~N 137 (457)
T 3bz5_A 65 GLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT-KLD--VSQNP-LLTYLNCARN 137 (457)
T ss_dssp TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS-CCC--CTTCT-TCCEEECTTS
T ss_pred CCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC-eec--CCCCC-cCCEEECCCC
Confidence 478889999988876666788889999988888865 3 788888888888888887 454 45554 7888888888
Q ss_pred cccccccccccc-cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCC-------------------CccCCC
Q 042366 81 SLEGHIHDTFAN-AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSN-------------------ITFPFQ 140 (343)
Q Consensus 81 ~l~~~~~~~~~~-~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------~~~~~~ 140 (343)
++++.....+.. +.+++++|...+.+ .+..+++|++|++++|.+.+. + + .+..++
T Consensus 138 ~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~l~~l~ 212 (457)
T 3bz5_A 138 TLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLDLNQNI 212 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCCCTTCT
T ss_pred ccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeeccccCC
Confidence 887753222222 55666666433333 244455555555555555442 1 1 013344
Q ss_pred CCcEEEeeCCcccccCCcccccCccccccccccCcccccCCc-ccCc-chhHHHHhccCeeeccCCcccccCcccccCCC
Q 042366 141 ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGA-FYDE-SITQKILVMFRAMDFSSNRFHGEIPEVLGNFK 218 (343)
Q Consensus 141 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 218 (343)
+|++|++++|.+++ +| +..+++|+.++++++....... .+.. ........+|++|++++|.+.+.+| +..++
T Consensus 213 ~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp TCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCT
T ss_pred CCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccc
Confidence 45555555555442 33 3344445555544442211100 0000 0000001123334444444333333 34556
Q ss_pred CCCEEEccCCcCccCCCc--------cccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCee
Q 042366 219 SLKVLNLSHNSLTGNIPV--------SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
+|+.|++++|...+.+|. .+.++++|++|++++|++++. + +..+++|+.|++++|+|++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 777777777764433322 245667888899999998874 3 7788899999999999976
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1e-24 Score=189.05 Aligned_cols=203 Identities=23% Similarity=0.274 Sum_probs=171.7
Q ss_pred ccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCc
Q 042366 2 ITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 81 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~ 81 (343)
.+.+++++++++.......++++.|++++|+++...+..|.++++|++|+|++|.++ .+|..++...++|++|++++|.
T Consensus 18 ~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCc
Confidence 578999999998644445788999999999999888889999999999999999998 7887776655699999999999
Q ss_pred ccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccc
Q 042366 82 LEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 161 (343)
Q Consensus 82 l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 161 (343)
++... +..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++ .++...+
T Consensus 97 l~~~~--------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~-~~~~~~~ 153 (270)
T 2o6q_A 97 LQALP--------------------IGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQ-SLPKGVF 153 (270)
T ss_dssp CCCCC--------------------TTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred CCcCC--------------------HhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCC-ccCHhHc
Confidence 88433 3446678999999999999987665555 77899999999999998 4454433
Q ss_pred cCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCcccccc
Q 042366 162 PSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 241 (343)
Q Consensus 162 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 241 (343)
.. +++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+
T Consensus 154 ~~-----------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (270)
T 2o6q_A 154 DK-----------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204 (270)
T ss_dssp TT-----------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred cC-----------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc
Confidence 32 5678899999999997777789999999999999999997777789999
Q ss_pred CCCCeEeCCCCcCccc
Q 042366 242 TALESLDLSFNKLDGR 257 (343)
Q Consensus 242 ~~L~~L~L~~n~l~~~ 257 (343)
++|+.|++++|.+...
T Consensus 205 ~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 205 EKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTCCEEECCSSCBCCS
T ss_pred cCCCEEEecCCCeeCC
Confidence 9999999999998754
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.3e-25 Score=191.99 Aligned_cols=226 Identities=20% Similarity=0.224 Sum_probs=173.9
Q ss_pred EEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCC
Q 042366 25 VFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSD 104 (343)
Q Consensus 25 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~ 104 (343)
..+..+.+++ .+|..+. ++|++|+|++|.+++..+..+..+ ++|++|++++|.++...
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~------------------ 68 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIE------------------ 68 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCCEEC------------------
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCCccC------------------
Confidence 4556666666 4555443 579999999999984334355555 48999999999887433
Q ss_pred CcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCccc
Q 042366 105 SFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFY 184 (343)
Q Consensus 105 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 184 (343)
+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. +...+..
T Consensus 69 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~--------------------- 122 (276)
T 2z62_A 69 --DGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASL-ENFPIGH--------------------- 122 (276)
T ss_dssp --TTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTSCCCCS-TTCCCTT---------------------
T ss_pred --HHHccCCcCCCEEECCCCccCccChhhh--cCCccccEEECCCCCcccc-Cchhccc---------------------
Confidence 3456778999999999999987666665 7789999999999988743 3221222
Q ss_pred CcchhHHHHhccCeeeccCCccccc-CcccccCCCCCCEEEccCCcCccCCCccccccCCCC----eEeCCCCcCccccc
Q 042366 185 DESITQKILVMFRAMDFSSNRFHGE-IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE----SLDLSFNKLDGRIP 259 (343)
Q Consensus 185 ~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~ 259 (343)
+++|++|++++|.+++. +|..+..+++|++|++++|++.+..+..+..+++|+ +|++++|.+++..+
T Consensus 123 --------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 123 --------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp --------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred --------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 57789999999999864 589999999999999999999988778888777777 89999999997655
Q ss_pred hhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCC
Q 042366 260 EQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCS 312 (343)
Q Consensus 260 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~ 312 (343)
..+ ...+|+.|++++|.+++..+. .+.....+..+++.+||+.|+|.
T Consensus 195 ~~~-~~~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 195 GAF-KEIRLKELALDTNQLKSVPDG-----IFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TSS-CSCCEEEEECCSSCCSCCCTT-----TTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccc-CCCcccEEECCCCceeecCHh-----HhcccccccEEEccCCcccccCC
Confidence 554 445899999999999654332 23444555677999999999996
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=8.8e-24 Score=196.28 Aligned_cols=254 Identities=27% Similarity=0.350 Sum_probs=137.8
Q ss_pred ccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCc
Q 042366 2 ITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 81 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~ 81 (343)
|++|++++|.+++ ++..+++|++|++++|++++. +.. .++|++|++++|.++ .+| .+..+. +|++|++++|+
T Consensus 93 L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~-~L~~L~l~~N~ 164 (454)
T 1jl5_A 93 LESLVASCNSLTE-LPELPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE-KLP-ELQNSS-FLKIIDVDNNS 164 (454)
T ss_dssp CSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS-SCC-CCTTCT-TCCEEECCSSC
T ss_pred CCEEEccCCcCCc-cccccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC-CCc-ccCCCC-CCCEEECCCCc
Confidence 4455555555544 333345555555555555432 110 146777777777776 466 355543 67777777777
Q ss_pred ccccccccccc-cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCccc
Q 042366 82 LEGHIHDTFAN-AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 160 (343)
Q Consensus 82 l~~~~~~~~~~-~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 160 (343)
+++.. ..+.. +.+++++|.+.+ +| .++.+++|++|++++|.+.+. +.. ..+|++|++++|.++ .+|.
T Consensus 165 l~~lp-~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~-----~~~L~~L~l~~n~l~-~lp~-- 232 (454)
T 1jl5_A 165 LKKLP-DLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL-----PLSLESIVAGNNILE-ELPE-- 232 (454)
T ss_dssp CSCCC-CCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC-----CTTCCEEECCSSCCS-SCCC--
T ss_pred CcccC-CCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC-----cCcccEEECcCCcCC-cccc--
Confidence 77532 22222 677777777766 34 466777777777777766541 111 135555555555555 4442
Q ss_pred ccCccccccccccCcccccCCcccC---------c---chhHHHHhccCeeeccCCcccc--cCccc-------------
Q 042366 161 FPSMEAMKNVDEQGRLEYMGGAFYD---------E---SITQKILVMFRAMDFSSNRFHG--EIPEV------------- 213 (343)
Q Consensus 161 ~~~l~~L~~l~~~~~~~~~~~~~~~---------~---~~~~~~~~~L~~L~Ls~n~l~~--~~~~~------------- 213 (343)
+..+++|+.++++++....-..... . .++ ..+++|++|++++|.+++ ..|..
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~-~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~ 311 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 311 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE
T ss_pred cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccC-cccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc
Confidence 4455555555555442211000000 0 000 002345555555555443 11111
Q ss_pred ccCC-CCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCee--cCCC
Q 042366 214 LGNF-KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWG--RIPQ 284 (343)
Q Consensus 214 l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~p~ 284 (343)
+..+ ++|++|++++|++.+ +|.. +++|+.|++++|++++ +|. .+++|+.|++++|++++ .+|.
T Consensus 312 i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 312 LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence 1112 467777777777774 3433 4778888888888874 444 46788888888888877 4554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.9e-26 Score=202.96 Aligned_cols=246 Identities=21% Similarity=0.234 Sum_probs=189.8
Q ss_pred ccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCccc-cccccccc----------c-cEEEeccCCCCCCc
Q 042366 39 PSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE-GHIHDTFA----------N-AIVNVENNMTSDSF 106 (343)
Q Consensus 39 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~----------~-~~l~l~~n~~~~~~ 106 (343)
+.+++.++|++|++++|.+ .+|..+... |++|++++|.++ ...+..+. . +.+++++|.+.+..
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred EEEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 4467788999999999999 788777653 899999999995 34444332 2 89999999999988
Q ss_pred Cccc--cCCCCcCEEEecCCcccccCCCCCCccCC-----CCCcEEEeeCCcccccCCcccccCccccccccccCccccc
Q 042366 107 PCWL--GSLPVLKILVLRSNRFDGPLCNSNITFPF-----QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 179 (343)
Q Consensus 107 ~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~ 179 (343)
|..+ ..+++|++|++++|.+.+. +..+ ..+ ++|++|++++|.+.+ ++...+..+++|+.|+++++....
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~--~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATR-DAWL--AELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSS-SSHH--HHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCH
T ss_pred HHHHHHhcCCCccEEEccCCCCcch-hHHH--HHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCc
Confidence 8876 8899999999999999875 4333 333 899999999999984 554558899999999999885211
Q ss_pred C----CcccCcchhHHHHhccCeeeccCCcccc---cCcccccCCCCCCEEEccCCcCccCCC-ccccccCCCCeEeCCC
Q 042366 180 G----GAFYDESITQKILVMFRAMDFSSNRFHG---EIPEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSF 251 (343)
Q Consensus 180 ~----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~ 251 (343)
. ..+. ...+++|++|++++|.+++ .....+..+++|++|++++|.+.+..| ..+..+++|++|+|++
T Consensus 188 ~~~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 188 ERGLISALC-----PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp HHHHHHHSC-----TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred chHHHHHHH-----hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 0 0000 0126899999999999983 223445678999999999999997664 4567789999999999
Q ss_pred CcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCC
Q 042366 252 NKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLT 308 (343)
Q Consensus 252 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~ 308 (343)
|+++ .+|..+. ++|+.|++++|+|++. |. +..+..+..+++.+|++.
T Consensus 263 N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~------~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 263 TGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS------PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC------TTTSCEEEEEECTTCTTT
T ss_pred CccC-hhhhhcc--CCceEEECCCCCCCCC-hh------HhhCCCCCEEeccCCCCC
Confidence 9999 5666655 8999999999999765 43 223344455678888875
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.8e-24 Score=203.70 Aligned_cols=246 Identities=22% Similarity=0.241 Sum_probs=162.9
Q ss_pred ccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCc
Q 042366 2 ITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 81 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~ 81 (343)
++.|++++|.++.......++|++|++++|+++. +|. .+++|++|+|++|+++ .+|. . .++|++|++++|.
T Consensus 42 l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~-l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---L-PPGLLELSIFSNP 112 (622)
T ss_dssp CCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---C-CTTCCEEEECSCC
T ss_pred CcEEEecCCCcCccChhhCCCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---C-CCCCCEEECcCCc
Confidence 6778888888774333335778888888888774 333 4677888888888877 6665 2 2477888888887
Q ss_pred ccccccccccc-cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCC--------------ccCCCCCcEEE
Q 042366 82 LEGHIHDTFAN-AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNI--------------TFPFQALRIID 146 (343)
Q Consensus 82 l~~~~~~~~~~-~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------~~~~~~L~~L~ 146 (343)
+++... .+.. +.|++++|.+... |.. +++|++|++++|.+.+....... ...+++|+.|+
T Consensus 113 l~~l~~-~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~ 187 (622)
T 3g06_A 113 LTHLPA-LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELS 187 (622)
T ss_dssp CCCCCC-CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred CCCCCC-CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEE
Confidence 776544 2222 6777777777653 322 36677777777766542110000 01125566666
Q ss_pred eeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEcc
Q 042366 147 LSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLS 226 (343)
Q Consensus 147 l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 226 (343)
+++|.++ .+|. .+.+|+.|+++++....-.. .+++|++|++++|.+++ +| ..+++|++|+|+
T Consensus 188 Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~~---------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 188 VSDNQLA-SLPT----LPSELYKLWAYNNRLTSLPA---------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVS 249 (622)
T ss_dssp CCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCC---------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECC
T ss_pred CCCCCCC-CCCC----ccchhhEEECcCCcccccCC---------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECC
Confidence 6666655 2332 23455555555543221110 14678999999999884 55 456889999999
Q ss_pred CCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCC
Q 042366 227 HNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQ 284 (343)
Q Consensus 227 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 284 (343)
+|.|+. +|. .+++|+.|+|++|.|+ .+|..+..+++|+.|++++|.+++..|.
T Consensus 250 ~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 250 GNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 999984 444 5688999999999999 5688899999999999999999877664
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1e-24 Score=189.29 Aligned_cols=202 Identities=24% Similarity=0.305 Sum_probs=146.5
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
+++|+.|++++|.++.. ..+..+++|++|+|++|.++ .++ .+..+. +|++|++++|.+++.
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~~l~-~L~~L~L~~n~l~~~-------------- 100 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALKELT-NLTYLILTGNQLQSL-------------- 100 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGTTCT-TCCEEECTTSCCCCC--------------
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhcCCC-CCCEEECCCCccCcc--------------
Confidence 67788888888877732 34677788888888888776 343 455553 788888887777642
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCccccc
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 179 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~ 179 (343)
.+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++ .++...+..
T Consensus 101 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~---------------- 155 (272)
T 3rfs_A 101 ------PNGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQ-SLPKGVFDK---------------- 155 (272)
T ss_dssp ------CTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT----------------
T ss_pred ------ChhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECCCCccC-ccCHHHhcc----------------
Confidence 33445667888888888888876554444 56778888888888877 333332222
Q ss_pred CCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccc
Q 042366 180 GGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 259 (343)
Q Consensus 180 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (343)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 156 -------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 219 (272)
T 3rfs_A 156 -------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 219 (272)
T ss_dssp -------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---
T ss_pred -------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---
Confidence 5567888888888887667777888888888888888887777778888888888888888764
Q ss_pred hhhhcCCcCCeEeccCCcCeecCCCC
Q 042366 260 EQLLSVTALALLNLSHSRLWGRIPQG 285 (343)
Q Consensus 260 ~~~~~l~~L~~L~l~~N~l~~~~p~~ 285 (343)
.+++|+.+++..|.++|.+|..
T Consensus 220 ----~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 220 ----TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp ----CTTTTHHHHHHHHHTGGGBBCT
T ss_pred ----cCcHHHHHHHHHHhCCCcccCc
Confidence 3556788888888888877763
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.2e-24 Score=185.91 Aligned_cols=202 Identities=25% Similarity=0.279 Sum_probs=123.8
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
+++++++++++++++. +|..+. ++++.|+|++|.+++..+..+..+ ++|++|++++|.+++..
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~------------- 71 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQ------------- 71 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEE-------------
T ss_pred cCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCccc-------------
Confidence 5566667777666663 333332 466667777776663334444444 36777777777665321
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCccccc
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 179 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~ 179 (343)
. ...+++|++|++++|.+.. .+..+ ..+++|++|++++|.++ .++...+..
T Consensus 72 --------~-~~~l~~L~~L~Ls~N~l~~-l~~~~--~~l~~L~~L~l~~N~l~-~l~~~~~~~---------------- 122 (290)
T 1p9a_G 72 --------V-DGTLPVLGTLDLSHNQLQS-LPLLG--QTLPALTVLDVSFNRLT-SLPLGALRG---------------- 122 (290)
T ss_dssp --------C-CSCCTTCCEEECCSSCCSS-CCCCT--TTCTTCCEEECCSSCCC-CCCSSTTTT----------------
T ss_pred --------C-CCCCCcCCEEECCCCcCCc-Cchhh--ccCCCCCEEECCCCcCc-ccCHHHHcC----------------
Confidence 1 1345666777777666653 23222 45667777777777766 333332322
Q ss_pred CCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccc
Q 042366 180 GGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 259 (343)
Q Consensus 180 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (343)
+++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|
T Consensus 123 -------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 123 -------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp -------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred -------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 445666777777777555666667777777777777777655566667777777777777777 455
Q ss_pred hhhhcCCcCCeEeccCCcCeec
Q 042366 260 EQLLSVTALALLNLSHSRLWGR 281 (343)
Q Consensus 260 ~~~~~l~~L~~L~l~~N~l~~~ 281 (343)
..+..+.+|+.+++++|.+.+.
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCCS
T ss_pred hhhcccccCCeEEeCCCCccCc
Confidence 5666666777777777777543
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.3e-23 Score=195.11 Aligned_cols=255 Identities=23% Similarity=0.319 Sum_probs=144.4
Q ss_pred CccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 1 NITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
+|++|++++|.+++ ++...++|++|++++|++++ +| .|.++++|++|++++|+++ .+|..+ .+|++|++++|
T Consensus 112 ~L~~L~l~~n~l~~-l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~----~~L~~L~L~~n 183 (454)
T 1jl5_A 112 SLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP----PSLEFIAAGNN 183 (454)
T ss_dssp TCCEEECCSSCCSC-CCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC----TTCCEEECCSS
T ss_pred CCcEEECCCCccCc-ccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc----ccccEEECcCC
Confidence 46777777777764 22234677777777777775 44 4777777777777777776 455432 24555555555
Q ss_pred cccccc----------------------cccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccC
Q 042366 81 SLEGHI----------------------HDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFP 138 (343)
Q Consensus 81 ~l~~~~----------------------~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 138 (343)
.+++.. ...-.-+.+++++|.+. .+| .+..+++|++|++++|++.+. +. .
T Consensus 184 ~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~-----~ 255 (454)
T 1jl5_A 184 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD-----L 255 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS-----C
T ss_pred cCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc-----c
Confidence 555421 11111156666666665 344 366677777777777776642 11 1
Q ss_pred CCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCccc----C-----cchh--HHHHhccCeeeccCCccc
Q 042366 139 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFY----D-----ESIT--QKILVMFRAMDFSSNRFH 207 (343)
Q Consensus 139 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~----~-----~~~~--~~~~~~L~~L~Ls~n~l~ 207 (343)
+++|++|++++|.+++ +|.. ..+|+.++++++....-.... . ..+. ...+++|++|++++|.++
T Consensus 256 ~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 256 PPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS
T ss_pred ccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc
Confidence 3566666666666653 3321 245666666554321100000 0 0000 011257889999999888
Q ss_pred ccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCcc--ccchhhhcC-------------CcCCeEe
Q 042366 208 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG--RIPEQLLSV-------------TALALLN 272 (343)
Q Consensus 208 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~ 272 (343)
+ +|.. +++|++|++++|.+++ +|. .+++|++|++++|++++ .+|.++..+ ++|+.|+
T Consensus 331 ~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ 402 (454)
T 1jl5_A 331 E-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------
T ss_pred c-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEE
Confidence 5 5543 5899999999999994 555 47899999999999998 678888777 7899999
Q ss_pred ccCCcCee--cCCC
Q 042366 273 LSHSRLWG--RIPQ 284 (343)
Q Consensus 273 l~~N~l~~--~~p~ 284 (343)
+++|++++ .+|.
T Consensus 403 ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 403 VETNPLREFPDIPE 416 (454)
T ss_dssp --------------
T ss_pred CCCCcCCccccchh
Confidence 99999987 5554
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-25 Score=198.81 Aligned_cols=234 Identities=21% Similarity=0.147 Sum_probs=143.1
Q ss_pred CcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccc----cEEEec
Q 042366 23 TEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFAN----AIVNVE 98 (343)
Q Consensus 23 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----~~l~l~ 98 (343)
++..+++.+.+.......+..+++|++|+|++|.+++..|..+..+ ++|++|++++|.+++..+ +.. +.++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 4566777777776666667778899999999999994444556666 499999999999986544 333 667777
Q ss_pred cCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccc
Q 042366 99 NNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 178 (343)
Q Consensus 99 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~ 178 (343)
+|.+.+.. ..++|++|++++|.+.+..+. .+++|++|++++|.+++ ++...+..+++|+.|+++++...
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCC
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCC
Confidence 77665432 236777777777776653322 24567777777777763 33333555666666666655322
Q ss_pred cC-CcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccc
Q 042366 179 MG-GAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 257 (343)
Q Consensus 179 ~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (343)
.. ...+ ...+++|++|++++|.+++. +. ...+++|++|+|++|.+.+. |..+..+++|++|++++|++++
T Consensus 158 ~~~~~~~-----~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~- 228 (317)
T 3o53_A 158 TVNFAEL-----AASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL- 228 (317)
T ss_dssp EEEGGGG-----GGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-
T ss_pred cccHHHH-----hhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-
Confidence 11 0000 01145566666666666533 22 12356666666666666633 3335566666666666666663
Q ss_pred cchhhhcCCcCCeEeccCCcCe
Q 042366 258 IPEQLLSVTALALLNLSHSRLW 279 (343)
Q Consensus 258 ~~~~~~~l~~L~~L~l~~N~l~ 279 (343)
+|..+..+++|+.|++++|.+.
T Consensus 229 l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 229 IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTCCCCTTCCEEECTTCCCB
T ss_pred hhhHhhcCCCCCEEEccCCCcc
Confidence 4555556666666666666665
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=7.8e-25 Score=193.62 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=60.8
Q ss_pred HhccCeeeccCCcccccCcccccCC---CCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCC
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNF---KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 269 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (343)
+++|++|++++|.+++..|..+..+ ++|++|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 5678888888888886666666655 58888888888888 4555543 6888888888888753 32 56778888
Q ss_pred eEeccCCcCe
Q 042366 270 LLNLSHSRLW 279 (343)
Q Consensus 270 ~L~l~~N~l~ 279 (343)
.|++++|+|+
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 8888888874
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=1.2e-26 Score=216.36 Aligned_cols=276 Identities=23% Similarity=0.204 Sum_probs=142.1
Q ss_pred CccEEEccCCccccc----CCCCCC----CCcEEEccCCcccc----cCCccccCCCccCeeecccccccccCCchhhc-
Q 042366 1 NITTLDLRNNRIQGS----ILVPPP----STEVFLVSNNKLSG----RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGN- 67 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~----~~~~~~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~- 67 (343)
+|++|++++|.+++. +...++ +|++|++++|+++. .++..|.++++|++|+|++|.+++..+..+..
T Consensus 57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 136 (461)
T 1z7x_W 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH
Confidence 467888888877542 112222 68888888888773 44677777888888888888776433333322
Q ss_pred ---CccCccEEEcccCcccccccccccc--------cEEEeccCCCCCCc------------------------------
Q 042366 68 ---FSTELITLHLKNNSLEGHIHDTFAN--------AIVNVENNMTSDSF------------------------------ 106 (343)
Q Consensus 68 ---~~~~L~~L~l~~n~l~~~~~~~~~~--------~~l~l~~n~~~~~~------------------------------ 106 (343)
..++|++|++++|.+++.....+.. +.+++++|.+....
T Consensus 137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 1225666666666666533222211 45555555544332
Q ss_pred ---CccccCCCCcCEEEecCCcccccCCCCC---CccCCCCCcEEEeeCCccccc----CCcccccCccccccccccCcc
Q 042366 107 ---PCWLGSLPVLKILVLRSNRFDGPLCNSN---ITFPFQALRIIDLSHNEFTGF----LPRRIFPSMEAMKNVDEQGRL 176 (343)
Q Consensus 107 ---~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~l~~~~~~ 176 (343)
+..+..+++|++|++++|.+.+.....+ ....+++|++|++++|.++.. ++. .+..+++|+.|+++++.
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH-HHhhCCCcceEECCCCC
Confidence 3333334444444444444432110000 001234455555555544421 111 12234445555554442
Q ss_pred cccCCcccCcchhHH---HHhccCeeeccCCccccc----CcccccCCCCCCEEEccCCcCccCCCccccc-----cCCC
Q 042366 177 EYMGGAFYDESITQK---ILVMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN-----MTAL 244 (343)
Q Consensus 177 ~~~~~~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L 244 (343)
....+.. .+... ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|
T Consensus 296 i~~~~~~---~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 372 (461)
T 1z7x_W 296 LGDEGAR---LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372 (461)
T ss_dssp CHHHHHH---HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CchHHHH---HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCce
Confidence 1110000 00000 013666666666666543 3445555667777777777666443333322 4567
Q ss_pred CeEeCCCCcCcc----ccchhhhcCCcCCeEeccCCcCee
Q 042366 245 ESLDLSFNKLDG----RIPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 245 ~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
++|++++|.+++ .++..+..+++|++|++++|++++
T Consensus 373 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred EEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 777777777764 455566666777777777776643
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=6.7e-27 Score=218.05 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=124.4
Q ss_pred CccEEEccCCccccc-------CCCCCCCCcEEEccCCcccccCCccc-cCCC----ccCeeecccccccc----cCCch
Q 042366 1 NITTLDLRNNRIQGS-------ILVPPPSTEVFLVSNNKLSGRIPPSI-CSLS----FLQYLSLSDNNLSG----TIPPC 64 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~-------~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~----~L~~L~L~~n~i~~----~~p~~ 64 (343)
+|++|++++|.++.. .+..+++|++|++++|.++...+..+ ..++ +|++|+|++|.+++ .++..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 589999999999742 24447999999999999986444333 3455 79999999999984 34666
Q ss_pred hhcCccCccEEEcccCccccccccccc---------ccEEEeccCCCCCCc----CccccCCCCcCEEEecCCcccccCC
Q 042366 65 LGNFSTELITLHLKNNSLEGHIHDTFA---------NAIVNVENNMTSDSF----PCWLGSLPVLKILVLRSNRFDGPLC 131 (343)
Q Consensus 65 ~~~~~~~L~~L~l~~n~l~~~~~~~~~---------~~~l~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~ 131 (343)
+..+. +|++|++++|.++...+..+. -+.+++++|.+.+.. +..+..+++|++|++++|.+.+...
T Consensus 109 l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 109 LRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp TTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 66665 899999999999865444322 289999999998754 5566678999999999999875322
Q ss_pred CCCC---ccCCCCCcEEEeeCCccccc----CCcccccCccccccccccCcc
Q 042366 132 NSNI---TFPFQALRIIDLSHNEFTGF----LPRRIFPSMEAMKNVDEQGRL 176 (343)
Q Consensus 132 ~~~~---~~~~~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~l~~~~~~ 176 (343)
..+. ....++|++|++++|.++.. ++ ..+..+++|+.|+++++.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH-HHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH-HHHHhCCCccEEeccCCc
Confidence 2210 01245788888888877642 12 224456777777777664
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.7e-23 Score=177.24 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=138.0
Q ss_pred ccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCc
Q 042366 46 FLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNR 125 (343)
Q Consensus 46 ~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 125 (343)
..++++++++.++ .+|..+. +++++|++++|.+++.. +..+..+++|++|++++|.
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~--------------------~~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLS--------------------DATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCC--------------------TTTTTTCTTCCEEECTTSC
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccC--------------------HhHhcCcccCCEEECCCCc
Confidence 3556666666666 6665443 25666666666665422 3345556777777777777
Q ss_pred ccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCc
Q 042366 126 FDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNR 205 (343)
Q Consensus 126 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 205 (343)
+.+..+..+ ..+++|++|++++|.++ .++...+.. +++|++|++++|.
T Consensus 71 l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~-----------------------------l~~L~~L~L~~N~ 118 (251)
T 3m19_A 71 LQTLSAGVF--DDLTELGTLGLANNQLA-SLPLGVFDH-----------------------------LTQLDKLYLGGNQ 118 (251)
T ss_dssp CCCCCTTTT--TTCTTCCEEECTTSCCC-CCCTTTTTT-----------------------------CTTCCEEECCSSC
T ss_pred CCccCHhHh--ccCCcCCEEECCCCccc-ccChhHhcc-----------------------------cCCCCEEEcCCCc
Confidence 766544444 55677777777777776 333333322 4566778888888
Q ss_pred ccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCC
Q 042366 206 FHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQG 285 (343)
Q Consensus 206 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 285 (343)
+++..+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..+..+..+++|+.|++++|.+.+...+.
T Consensus 119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 198 (251)
T 3m19_A 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEI 198 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTH
T ss_pred CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcccc
Confidence 87666666778888888888888888777767888888888888888888777777888888888888888886653332
Q ss_pred CccCCC-----CcccccCCCCCCCCCCCCCCCCCCC
Q 042366 286 NQFNTF-----ANDSYFGNIHLCGEPLTMRCSNDGL 316 (343)
Q Consensus 286 ~~~~~~-----~~~~~~~~~~l~~np~~~~C~~~~~ 316 (343)
..+..+ ..........+++.|....|.....
T Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 234 (251)
T 3m19_A 199 LYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKV 234 (251)
T ss_dssp HHHHHHHHHSGGGBCC-------CCGGGCBBTTSCB
T ss_pred HHHHHHHHhcccceeeccCcccccCCCcCccCCCcE
Confidence 222111 1111122335677888888887643
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3e-23 Score=176.50 Aligned_cols=199 Identities=18% Similarity=0.193 Sum_probs=120.1
Q ss_pred CCCCCcEEEccCCcccccCCccccCCCccCeeeccccc-ccccCCchhhcCccCccEEEccc-CcccccccccccccEEE
Q 042366 19 PPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNN-LSGTIPPCLGNFSTELITLHLKN-NSLEGHIHDTFANAIVN 96 (343)
Q Consensus 19 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~l~ 96 (343)
..+++++|++++|+++++.+..|.++++|++|++++|+ ++ .++...+...++|++|++++ |.++...
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~---------- 97 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYID---------- 97 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEEC----------
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcC----------
Confidence 45577777777777776666677777777777777775 66 55544333334777777776 7766432
Q ss_pred eccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCc---EEEeeCC-cccccCCcccccCccccccccc
Q 042366 97 VENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALR---IIDLSHN-EFTGFLPRRIFPSMEAMKNVDE 172 (343)
Q Consensus 97 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~~l~~ 172 (343)
+..|..+++|++|++++|.+.+ .+. + ..+++|+ +|++++| .++ .++...+..
T Consensus 98 ----------~~~f~~l~~L~~L~l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~--------- 153 (239)
T 2xwt_C 98 ----------PDALKELPLLKFLGIFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMT-SIPVNAFQG--------- 153 (239)
T ss_dssp ----------TTSEECCTTCCEEEEEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCC-EECTTTTTT---------
T ss_pred ----------HHHhCCCCCCCEEeCCCCCCcc-ccc-c--ccccccccccEEECCCCcchh-hcCcccccc---------
Confidence 2344556777777777777665 222 2 4455555 7777777 665 333332322
Q ss_pred cCcccccCCcccCcchhHHHHhccC-eeeccCCcccccCcccccCCCCCCEEEccCCc-CccCCCcccccc-CCCCeEeC
Q 042366 173 QGRLEYMGGAFYDESITQKILVMFR-AMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNS-LTGNIPVSFENM-TALESLDL 249 (343)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L 249 (343)
+++|+ +|++++|.++...+..+.. ++|++|++++|. +++..+..|.++ ++|+.|++
T Consensus 154 --------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 154 --------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp --------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred --------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 34455 6666666666333333433 666677777663 665555666666 66677777
Q ss_pred CCCcCccccchhhhcCCcCCeEeccCC
Q 042366 250 SFNKLDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
++|++++..+. .+++|+.|+++++
T Consensus 213 ~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 213 SQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCccccCChh---HhccCceeeccCc
Confidence 77666643222 4556666666554
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=8.9e-25 Score=197.45 Aligned_cols=261 Identities=14% Similarity=0.136 Sum_probs=160.0
Q ss_pred EEEccCCcccccCCC---CCCCCcEEEccCCcccccCC----ccccCCC-ccCeeecccccccccCCchhhcC----ccC
Q 042366 4 TLDLRNNRIQGSILV---PPPSTEVFLVSNNKLSGRIP----PSICSLS-FLQYLSLSDNNLSGTIPPCLGNF----STE 71 (343)
Q Consensus 4 ~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~~----~~~ 71 (343)
.++++.|.+++.++. ..++|++|+|++|.++...+ ..|.+++ +|++|+|++|.+++..+..+... .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 468899998875433 36669999999999997776 7788898 89999999999986656666554 248
Q ss_pred ccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCC-CCcCEEEecCCcccccCCCCCC--ccC-CCCCcEEEe
Q 042366 72 LITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSL-PVLKILVLRSNRFDGPLCNSNI--TFP-FQALRIIDL 147 (343)
Q Consensus 72 L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~--~~~-~~~L~~L~l 147 (343)
|++|++++|.+++..+..+.. .+..+ ++|++|++++|.+.+..+..+. ... ..+|++|++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~----------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVK----------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHH----------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred ccEEECcCCcCChHHHHHHHH----------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEc
Confidence 999999999998766543321 12222 4445555555544432211110 011 134455555
Q ss_pred eCCcccccCCccc---ccCc-cccccccccCcccccCCcccCcchhHHHH-hccCeeeccCCccccc----CcccccC-C
Q 042366 148 SHNEFTGFLPRRI---FPSM-EAMKNVDEQGRLEYMGGAFYDESITQKIL-VMFRAMDFSSNRFHGE----IPEVLGN-F 217 (343)
Q Consensus 148 ~~n~l~~~~~~~~---~~~l-~~L~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~----~~~~l~~-l 217 (343)
++|.++...+..+ +... ++|+.|+++++.....+...... ..... ++|++|++++|.+++. ++..+.. .
T Consensus 146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK-FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHH-HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence 5544442111111 1111 24444444443221111000000 00112 5899999999999853 4445554 4
Q ss_pred CCCCEEEccCCcCccCCC----ccccccCCCCeEeCCCCcCcccc-------chhhhcCCcCCeEeccCCcCeec
Q 042366 218 KSLKVLNLSHNSLTGNIP----VSFENMTALESLDLSFNKLDGRI-------PEQLLSVTALALLNLSHSRLWGR 281 (343)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~l~~N~l~~~ 281 (343)
++|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+.
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 589999999999986544 34566789999999999854332 23456778899999999998654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.1e-22 Score=174.66 Aligned_cols=206 Identities=18% Similarity=0.217 Sum_probs=165.3
Q ss_pred CCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccC
Q 042366 21 PSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENN 100 (343)
Q Consensus 21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n 100 (343)
..+..+.+.++.+... ..+..+++|+.|++++|.++ .++ .+..+. +|++|++++|.+++.
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~-~L~~L~l~~n~l~~~--------------- 78 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLP-NVRYLALGGNKLHDI--------------- 78 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCT-TGGGCT-TCCEEECTTSCCCCC---------------
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-ccc-ccccCC-CCcEEECCCCCCCCc---------------
Confidence 3344455556665533 33567888999999999887 554 455554 899999999988731
Q ss_pred CCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccC
Q 042366 101 MTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG 180 (343)
Q Consensus 101 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 180 (343)
..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++ ++...+..
T Consensus 79 -------~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~-~~~~~~~~----------------- 131 (272)
T 3rfs_A 79 -------SALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLVENQLQS-LPDGVFDK----------------- 131 (272)
T ss_dssp -------GGGTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCCC-CCTTTTTT-----------------
T ss_pred -------hhhcCCCCCCEEECCCCccCccChhHh--cCCcCCCEEECCCCcCCc-cCHHHhcc-----------------
Confidence 246678999999999999987655544 678999999999999883 44333332
Q ss_pred CcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccch
Q 042366 181 GAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 260 (343)
Q Consensus 181 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (343)
+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..|+.+++|++|++++|.+++..+.
T Consensus 132 ------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 132 ------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp ------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 56789999999999977777889999999999999999988888889999999999999999988888
Q ss_pred hhhcCCcCCeEeccCCcCeecCCCC
Q 042366 261 QLLSVTALALLNLSHSRLWGRIPQG 285 (343)
Q Consensus 261 ~~~~l~~L~~L~l~~N~l~~~~p~~ 285 (343)
.+..+++|+.|++++|.+.+..|..
T Consensus 200 ~~~~l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HHhCCcCCCEEEccCCCccccCcHH
Confidence 8899999999999999998877753
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.6e-23 Score=188.39 Aligned_cols=201 Identities=12% Similarity=0.062 Sum_probs=115.2
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccE-EEcccCc
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELIT-LHLKNNS 81 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~-L~l~~n~ 81 (343)
++++.++++++.......+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|...+...+++++ +.++.|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 456777777774332336788888888888887777788888888888888888865677665554445554 5566677
Q ss_pred ccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeC-CcccccCCccc
Q 042366 82 LEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSH-NEFTGFLPRRI 160 (343)
Q Consensus 82 l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~ 160 (343)
++... |..|..+++|++|++++|++....+..+ ....++..+++.+ +.+. .++...
T Consensus 92 l~~l~--------------------~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~-~l~~~~ 148 (350)
T 4ay9_X 92 LLYIN--------------------PEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIH-TIERNS 148 (350)
T ss_dssp CCEEC--------------------TTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCC-EECTTS
T ss_pred ccccC--------------------chhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccc-cccccc
Confidence 77543 4455667777777777777765433333 3445666777765 3444 444443
Q ss_pred ccCcc-ccccccccCccc-ccCCcccCcchhHHHHhccCeeeccC-CcccccCcccccCCCCCCEEEccCCcCccC
Q 042366 161 FPSME-AMKNVDEQGRLE-YMGGAFYDESITQKILVMFRAMDFSS-NRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 233 (343)
Q Consensus 161 ~~~l~-~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 233 (343)
+..+. .++.|+++++.. .+....+. ..+|++|++++ |.++...++.|..+++|++|+|++|+|+..
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~-------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFN-------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSST-------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred hhhcchhhhhhccccccccCCChhhcc-------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 33322 233333333211 11111111 23445555542 344433334455555555555555555533
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.2e-22 Score=179.43 Aligned_cols=192 Identities=19% Similarity=0.269 Sum_probs=155.9
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
+++|++|++++|+++.. + .+..+++|++|+|++|.++ .++. +..+ ++|++|++++|.+++.
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l-~~L~~L~L~~n~l~~~-------------- 100 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP-LKNL-TKITELELSGNPLKNV-------------- 100 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTTC-CSCCEEECCSCCCSCC--------------
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh-HccC-CCCCEEEccCCcCCCc--------------
Confidence 78899999999998853 3 5888999999999999998 6665 5555 4899999999988732
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCccccc
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 179 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~ 179 (343)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +.
T Consensus 101 --------~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~-~~--l~----------------- 148 (308)
T 1h6u_A 101 --------SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNI-SP--LA----------------- 148 (308)
T ss_dssp --------GGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCC-GG--GG-----------------
T ss_pred --------hhhcCCCCCCEEECCCCCCCCchh----hcCCCCCCEEECCCCccCcC-cc--cc-----------------
Confidence 246678999999999999886422 36789999999999988732 21 11
Q ss_pred CCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccc
Q 042366 180 GGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 259 (343)
Q Consensus 180 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (343)
.+++|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|++++..
T Consensus 149 ------------~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~- 211 (308)
T 1h6u_A 149 ------------GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS- 211 (308)
T ss_dssp ------------GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-
T ss_pred ------------CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc-
Confidence 167789999999999854 33 8899999999999999986544 788999999999999999654
Q ss_pred hhhhcCCcCCeEeccCCcCee
Q 042366 260 EQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 260 ~~~~~l~~L~~L~l~~N~l~~ 280 (343)
.+..+++|+.|++++|++++
T Consensus 212 -~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 -PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GGTTCTTCCEEEEEEEEEEC
T ss_pred -cccCCCCCCEEEccCCeeec
Confidence 37899999999999999965
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=5e-22 Score=190.35 Aligned_cols=231 Identities=23% Similarity=0.221 Sum_probs=157.7
Q ss_pred CccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 1 NITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
+|+.|++++|.|+. ++..+++|++|+|++|+++. +|. .+++|++|+|++|.++ .+|. ..++|++|++++|
T Consensus 62 ~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N 131 (622)
T 3g06_A 62 HITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGN 131 (622)
T ss_dssp TCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSS
T ss_pred CCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCC
Confidence 46777777777763 34467777777777777763 333 4566677777777666 4444 1235555555555
Q ss_pred cccccccccccccEEEeccCCCCCCc--Cccc--------------cCCCCcCEEEecCCcccccCCCCCCccCCCCCcE
Q 042366 81 SLEGHIHDTFANAIVNVENNMTSDSF--PCWL--------------GSLPVLKILVLRSNRFDGPLCNSNITFPFQALRI 144 (343)
Q Consensus 81 ~l~~~~~~~~~~~~l~l~~n~~~~~~--~~~~--------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 144 (343)
+++......-.-+.|++++|.+.+.. +..+ ..+++|+.|++++|.+.+. + ..+++|+.
T Consensus 132 ~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l-~-----~~~~~L~~ 205 (622)
T 3g06_A 132 QLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL-P-----TLPSELYK 205 (622)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-C-----CCCTTCCE
T ss_pred CCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC-C-----CccchhhE
Confidence 55543222111144555555444311 1111 2347889999999988752 2 12578999
Q ss_pred EEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEE
Q 042366 145 IDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLN 224 (343)
Q Consensus 145 L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 224 (343)
|++++|.++ .+|. .+++|+.|++++|....-. ..+++|++|++++|.++ .+|. .+++|+.|+
T Consensus 206 L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~lp---------~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 206 LWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSLP---------VLPSELKELMVSGNRLT-SLPM---LPSGLLSLS 267 (622)
T ss_dssp EECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred EECcCCccc-ccCC----CCCCCCEEEccCCccCcCC---------CCCCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence 999999998 5553 3578999999887433211 11578999999999998 4555 578999999
Q ss_pred ccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCC
Q 042366 225 LSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 266 (343)
Q Consensus 225 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (343)
|++|.|+ .+|..+..+++|+.|+|++|.+++..+..+..++
T Consensus 268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999999 6788899999999999999999988888776655
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=2.2e-22 Score=171.08 Aligned_cols=194 Identities=20% Similarity=0.168 Sum_probs=157.6
Q ss_pred CccEEEccCCccccc---CCCCCCCCcEEEccCCc-ccccCCccccCCCccCeeeccc-ccccccCCchhhcCccCccEE
Q 042366 1 NITTLDLRNNRIQGS---ILVPPPSTEVFLVSNNK-LSGRIPPSICSLSFLQYLSLSD-NNLSGTIPPCLGNFSTELITL 75 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~---~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~~~~~L~~L 75 (343)
+|++|++++|++++. .+..+++|++|++++|+ ++.+.+..|.++++|++|++++ |.++ .++...+...++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 478999999999864 35569999999999997 9988888999999999999999 9998 6665544444599999
Q ss_pred EcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcC---EEEecCC-cccccCCCCCCccCCCCCc-EEEeeCC
Q 042366 76 HLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLK---ILVLRSN-RFDGPLCNSNITFPFQALR-IIDLSHN 150 (343)
Q Consensus 76 ~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~L~-~L~l~~n 150 (343)
++++|.+++ +|. +..+++|+ +|++++| .+.+..+..+ ..+++|+ +|++++|
T Consensus 111 ~l~~n~l~~---------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 111 GIFNTGLKM---------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEEECCCS---------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSC
T ss_pred eCCCCCCcc---------------------ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCC
Confidence 999999984 333 56677777 9999999 8887655555 6789999 9999999
Q ss_pred cccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCc-ccccCcccccCC-CCCCEEEccCC
Q 042366 151 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNR-FHGEIPEVLGNF-KSLKVLNLSHN 228 (343)
Q Consensus 151 ~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~Ls~n 228 (343)
.++ .+|...+. .++|++|++++|. ++...+..|..+ ++|++|++++|
T Consensus 167 ~l~-~i~~~~~~------------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 167 GFT-SVQGYAFN------------------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp CCC-EECTTTTT------------------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred CCc-ccCHhhcC------------------------------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 998 66655433 2467889999995 987777889999 99999999999
Q ss_pred cCccCCCccccccCCCCeEeCCCCc
Q 042366 229 SLTGNIPVSFENMTALESLDLSFNK 253 (343)
Q Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (343)
.+++..+. .+++|+.|+++++.
T Consensus 216 ~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 216 SVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCCCT---TCTTCSEEECTTC-
T ss_pred ccccCChh---HhccCceeeccCcc
Confidence 99955443 56789999998763
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3e-24 Score=195.66 Aligned_cols=237 Identities=18% Similarity=0.249 Sum_probs=140.2
Q ss_pred CCCCcEEEccCCccccc----CCccccCCCccCeeeccccc---ccccCCchh-------hcCccCccEEEcccCccccc
Q 042366 20 PPSTEVFLVSNNKLSGR----IPPSICSLSFLQYLSLSDNN---LSGTIPPCL-------GNFSTELITLHLKNNSLEGH 85 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~---i~~~~p~~~-------~~~~~~L~~L~l~~n~l~~~ 85 (343)
+++|++|+|++|+++.. ++..|.++++|++|+|++|. +++.+|..+ ..+ ++|++|++++|.++..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSCCCCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-CcccEEECCCCcCCHH
Confidence 56677777777766643 22335566677777776643 333344443 233 3677777777766642
Q ss_pred c----cccccc----cEEEeccCCCCCCcCc----cccCC---------CCcCEEEecCCcccccCCCC--CCccCCCCC
Q 042366 86 I----HDTFAN----AIVNVENNMTSDSFPC----WLGSL---------PVLKILVLRSNRFDGPLCNS--NITFPFQAL 142 (343)
Q Consensus 86 ~----~~~~~~----~~l~l~~n~~~~~~~~----~~~~l---------~~L~~L~l~~n~l~~~~~~~--~~~~~~~~L 142 (343)
. +..+.. +.|+|++|.+....+. .+..+ ++|++|++++|++....... ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 1 111111 3333333333222111 12222 56666666666654211110 011345566
Q ss_pred cEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCccc----ccCcccccCCC
Q 042366 143 RIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFH----GEIPEVLGNFK 218 (343)
Q Consensus 143 ~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----~~~~~~l~~l~ 218 (343)
++|++++|.++......+.. . ....+++|++|+|++|.++ ..+|..+..++
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~------------------~-------~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLL------------------E-------GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHH------------------T-------TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred CEEECcCCCCCHhHHHHHHH------------------H-------HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 66666666554110000000 0 0011578999999999996 46778888999
Q ss_pred CCCEEEccCCcCccC----CCcccc--ccCCCCeEeCCCCcCcc----ccchhh-hcCCcCCeEeccCCcCeecC
Q 042366 219 SLKVLNLSHNSLTGN----IPVSFE--NMTALESLDLSFNKLDG----RIPEQL-LSVTALALLNLSHSRLWGRI 282 (343)
Q Consensus 219 ~L~~L~Ls~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~ 282 (343)
+|++|+|++|.+.+. ++..+. .+++|++|+|++|.+++ .++..+ ..+++|+.|++++|.+++..
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999999999999865 445553 38999999999999997 366666 56899999999999997654
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.4e-22 Score=171.27 Aligned_cols=186 Identities=20% Similarity=0.226 Sum_probs=151.5
Q ss_pred CccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCC
Q 042366 71 ELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHN 150 (343)
Q Consensus 71 ~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 150 (343)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~---------------------~~p~~~~--~~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n 69 (251)
T 3m19_A 15 GKKEVDCQGKSLD---------------------SVPSGIP--ADTEKLDLQSTGLATLSDATF--RGLTKLTWLNLDYN 69 (251)
T ss_dssp GGTEEECTTCCCS---------------------SCCSCCC--TTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTS
T ss_pred CCeEEecCCCCcc---------------------ccCCCCC--CCCCEEEccCCCcCccCHhHh--cCcccCCEEECCCC
Confidence 5677777777776 3444333 689999999999988666655 77999999999999
Q ss_pred cccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcC
Q 042366 151 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSL 230 (343)
Q Consensus 151 ~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 230 (343)
.+++. +...+.. +++|++|++++|.+++..+..|..+++|++|+|++|.+
T Consensus 70 ~l~~~-~~~~~~~-----------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 70 QLQTL-SAGVFDD-----------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp CCCCC-CTTTTTT-----------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCcc-CHhHhcc-----------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence 99843 3333332 56789999999999987788899999999999999999
Q ss_pred ccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCC
Q 042366 231 TGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMR 310 (343)
Q Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~ 310 (343)
++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+. .+..+..+..+++.+|||.|+
T Consensus 120 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG-----AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-----TTTTCTTCCEEECCSCCBCTT
T ss_pred CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH-----HHhCCCCCCEEEeeCCceeCC
Confidence 988888889999999999999999987777899999999999999999765543 344445566779999999999
Q ss_pred -CCCCCC
Q 042366 311 -CSNDGL 316 (343)
Q Consensus 311 -C~~~~~ 316 (343)
|...|+
T Consensus 195 ~~~~~~l 201 (251)
T 3m19_A 195 RCEILYL 201 (251)
T ss_dssp STTHHHH
T ss_pred ccccHHH
Confidence 776554
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=9.2e-24 Score=188.74 Aligned_cols=253 Identities=16% Similarity=0.120 Sum_probs=152.5
Q ss_pred ccEEEccCCcccccCCCCC--CCCcEEEccCCcccccCCccccCCCccCeeeccccccccc-CCchhhcCccCccEEEcc
Q 042366 2 ITTLDLRNNRIQGSILVPP--PSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGT-IPPCLGNFSTELITLHLK 78 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~p~~~~~~~~~L~~L~l~ 78 (343)
++.++++++.+....+..+ ++++.|++++|.+.+..+. +.++++|++|+|++|.+++. ++..+..+ ++|++|+++
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECT
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCc
Confidence 4678888887765444444 7888888888888866555 45688888888888887744 55555555 488888888
Q ss_pred cCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCC-ccccc-CCCCCCccCCCCCcEEEeeCC-ccccc
Q 042366 79 NNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSN-RFDGP-LCNSNITFPFQALRIIDLSHN-EFTGF 155 (343)
Q Consensus 79 ~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~~~L~~L~l~~n-~l~~~ 155 (343)
+|.+++.. +..++.+++|++|++++| .+.+. .+..+ ..+++|++|++++| .++..
T Consensus 127 ~~~l~~~~--------------------~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 127 GLRLSDPI--------------------VNTLAKNSNLVRLNLSGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp TCBCCHHH--------------------HHHHTTCTTCSEEECTTCBSCCHHHHHHHH--HHCTTCCEEECCCCTTCCHH
T ss_pred CcccCHHH--------------------HHHHhcCCCCCEEECCCCCCCCHHHHHHHH--hcCCCCCEEcCCCCCCcChH
Confidence 88776533 344556788888888888 45531 11112 45778888888888 77643
Q ss_pred CCcccccCcc-ccccccccCcccccCCcccCcchhHHHHhccCeeeccCCc-ccccCcccccCCCCCCEEEccCCc-Ccc
Q 042366 156 LPRRIFPSME-AMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNR-FHGEIPEVLGNFKSLKVLNLSHNS-LTG 232 (343)
Q Consensus 156 ~~~~~~~~l~-~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~ 232 (343)
.....+..++ +|+.|+++++......... ......+++|++|++++|. +++..+..+..+++|++|++++|. +..
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDL--STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHH--HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHH--HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 2222344455 5555555554211100000 0011225667777777776 555556666677777777777774 222
Q ss_pred CCCccccccCCCCeEeCCCCcCccccchhhhcC-CcCCeEeccCCcCeecCCC
Q 042366 233 NIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALALLNLSHSRLWGRIPQ 284 (343)
Q Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p~ 284 (343)
.....+..+++|+.|++++| +++. .+..+ ..+..|++++|.+++..|.
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 22224566677777777777 4422 22222 2355666777777665554
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.4e-21 Score=172.50 Aligned_cols=189 Identities=18% Similarity=0.259 Sum_probs=155.1
Q ss_pred CccEEEccCCccccc-CCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 1 NITTLDLRNNRIQGS-ILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
+|++|++++|.+... .+..+++|++|++++|+++...+ +.++++|++|+|++|.++ .++ .+..+. +|++|++++
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~l~-~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQ-SIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCT-TCCEEECTT
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcCCC-CCCEEECCC
Confidence 589999999998753 23448999999999999996544 999999999999999998 555 566664 899999999
Q ss_pred CcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcc
Q 042366 80 NSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRR 159 (343)
Q Consensus 80 n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 159 (343)
|.+++. + .+..+++|++|++++|.+.+..+ ...+++|++|++++|.++. ++.
T Consensus 117 n~l~~~---------------------~-~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~-~~~- 168 (308)
T 1h6u_A 117 TQITDV---------------------T-PLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSD-LTP- 168 (308)
T ss_dssp SCCCCC---------------------G-GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-CGG-
T ss_pred CCCCCc---------------------h-hhcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcCCC-Chh-
Confidence 998742 2 26778999999999999986433 3678999999999999873 222
Q ss_pred cccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCcccc
Q 042366 160 IFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 239 (343)
Q Consensus 160 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 239 (343)
+.. +++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +.
T Consensus 169 -l~~-----------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~ 214 (308)
T 1h6u_A 169 -LAN-----------------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA 214 (308)
T ss_dssp -GTT-----------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT
T ss_pred -hcC-----------------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc
Confidence 221 5678999999999985443 7889999999999999996553 78
Q ss_pred ccCCCCeEeCCCCcCcc
Q 042366 240 NMTALESLDLSFNKLDG 256 (343)
Q Consensus 240 ~l~~L~~L~L~~n~l~~ 256 (343)
.+++|+.|++++|.+++
T Consensus 215 ~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCeeec
Confidence 89999999999999985
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=1e-21 Score=186.06 Aligned_cols=216 Identities=23% Similarity=0.303 Sum_probs=126.8
Q ss_pred CCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCC
Q 042366 22 STEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNM 101 (343)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~ 101 (343)
+++.|++++|++++ +|..+ .++|++|+|++|.|+ .+| . ..++|++|++++|.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~----------------- 114 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST----------------- 114 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-----------------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-----------------
Confidence 78888888888886 45544 367888888888887 777 2 23478888888888874
Q ss_pred CCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCC
Q 042366 102 TSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGG 181 (343)
Q Consensus 102 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 181 (343)
+|. +.. +|++|++++|.+.+ .+. .+++|++|++++|.+++ +|. .
T Consensus 115 ----ip~-l~~--~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~----~------------------ 158 (571)
T 3cvr_A 115 ----LPE-LPA--SLKHLDVDNNQLTM-LPE-----LPALLEYINADNNQLTM-LPE----L------------------ 158 (571)
T ss_dssp ----CCC-CCT--TCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC----C------------------
T ss_pred ----cch-hhc--CCCEEECCCCcCCC-CCC-----cCccccEEeCCCCccCc-CCC----c------------------
Confidence 222 222 67777777777765 222 35677777777777663 442 0
Q ss_pred cccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCC-------CeEeCCCCcC
Q 042366 182 AFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL-------ESLDLSFNKL 254 (343)
Q Consensus 182 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l 254 (343)
+++|++|++++|.+++ +|. |. ++|+.|+|++|.|+ .+|. +.. +| +.|+|++|.|
T Consensus 159 -----------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 159 -----------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp -----------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred -----------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 3456667777777664 444 44 66777777777776 3444 433 55 7777777777
Q ss_pred ccccchhhhcCCcCCeEeccCCcCeecCCCCC-ccCC---CCc--c--cc-cCCCCCCCCCCCCCCCCCCCCCC
Q 042366 255 DGRIPEQLLSVTALALLNLSHSRLWGRIPQGN-QFNT---FAN--D--SY-FGNIHLCGEPLTMRCSNDGLPKA 319 (343)
Q Consensus 255 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~---~~~--~--~~-~~~~~l~~np~~~~C~~~~~~~~ 319 (343)
+ .+|..+..+++|+.|++++|.|++.+|... .+.. +.. . +. .+....-.+| .|+|...|++..
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~Wl~~~ 291 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP-LADAVTAWFPEN 291 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC----------C-CSHHHHTTCC--
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeeccccccccccc-chhhHHHHhhhh
Confidence 6 355555567777777777777766555321 0000 000 0 00 0112222355 799999999553
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=9.8e-24 Score=190.61 Aligned_cols=270 Identities=17% Similarity=0.135 Sum_probs=183.5
Q ss_pred EEEccCCcccccCCccccCCCccCeeecccccccccCC----chhhcCccCccEEEcccCcccccccccccccEEEeccC
Q 042366 25 VFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIP----PCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENN 100 (343)
Q Consensus 25 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n 100 (343)
.+.++.|++++.+|..+...++|++|+|++|.+++..+ ..+.....+|++|++++|.+++..+..+.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--------- 72 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV--------- 72 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH---------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH---------
Confidence 46789999998888877777789999999999984433 34444433799999999999876554443
Q ss_pred CCCCCcCccccCC-CCcCEEEecCCcccccCCCCCC--ccCC-CCCcEEEeeCCcccccCCccc---ccC-ccccccccc
Q 042366 101 MTSDSFPCWLGSL-PVLKILVLRSNRFDGPLCNSNI--TFPF-QALRIIDLSHNEFTGFLPRRI---FPS-MEAMKNVDE 172 (343)
Q Consensus 101 ~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~--~~~~-~~L~~L~l~~n~l~~~~~~~~---~~~-l~~L~~l~~ 172 (343)
..+... ++|++|++++|.+.+..+..+. ...+ ++|++|++++|.++...+..+ +.. ..+|+.|++
T Consensus 73 -------~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 73 -------QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp -------HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred -------HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEc
Confidence 122223 8999999999999864433221 1233 799999999999985443332 222 368999999
Q ss_pred cCcccccCCcccCcchhHHHHhccCeeeccCCcccccCccc----ccCC-CCCCEEEccCCcCccC----CCccccc-cC
Q 042366 173 QGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEV----LGNF-KSLKVLNLSHNSLTGN----IPVSFEN-MT 242 (343)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~ 242 (343)
++|.....+...-........++|++|++++|.+++..+.. +..+ ++|++|+|++|.+.+. ++..+.. .+
T Consensus 146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT
T ss_pred cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC
Confidence 98754432211000000001248999999999998766644 4455 5999999999999863 3344544 46
Q ss_pred CCCeEeCCCCcCccccc----hhhhcCCcCCeEeccCCcCeecCCCC--CccCCCCcccccCCCCCCCCCCCCC
Q 042366 243 ALESLDLSFNKLDGRIP----EQLLSVTALALLNLSHSRLWGRIPQG--NQFNTFANDSYFGNIHLCGEPLTMR 310 (343)
Q Consensus 243 ~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~~~~~~~l~~np~~~~ 310 (343)
+|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+..++. .....+.....+..+++.+|++...
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99999999999987544 34567789999999999953332221 1112344445555667888877544
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=5.8e-22 Score=175.15 Aligned_cols=220 Identities=23% Similarity=0.255 Sum_probs=134.3
Q ss_pred ccCeeecccccccccCCch---hhcCccCccEEEcccCcccccccccc--cc----cEEEeccCCCCCCcC----ccccC
Q 042366 46 FLQYLSLSDNNLSGTIPPC---LGNFSTELITLHLKNNSLEGHIHDTF--AN----AIVNVENNMTSDSFP----CWLGS 112 (343)
Q Consensus 46 ~L~~L~L~~n~i~~~~p~~---~~~~~~~L~~L~l~~n~l~~~~~~~~--~~----~~l~l~~n~~~~~~~----~~~~~ 112 (343)
.++.|.+.++.+++..-.. .... ++|++|++++|.+++..+..+ .. +.+++++|.+.+..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3556666666554211001 1112 257777777776665544433 11 333333333333222 12234
Q ss_pred CCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccccc--CC-cccccCccccccccccCcccccCCcccCcchh
Q 042366 113 LPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGF--LP-RRIFPSMEAMKNVDEQGRLEYMGGAFYDESIT 189 (343)
Q Consensus 113 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 189 (343)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. ++ ...+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~--------------------------- 194 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLMAALCPH--------------------------- 194 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHHTTSCTT---------------------------
T ss_pred ccCCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhhHHHhhh---------------------------
Confidence 5566666666666654444443 4556666666666654321 00 00000
Q ss_pred HHHHhccCeeeccCCcccccCcc----cccCCCCCCEEEccCCcCccCCCcccccc---CCCCeEeCCCCcCccccchhh
Q 042366 190 QKILVMFRAMDFSSNRFHGEIPE----VLGNFKSLKVLNLSHNSLTGNIPVSFENM---TALESLDLSFNKLDGRIPEQL 262 (343)
Q Consensus 190 ~~~~~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~ 262 (343)
.+++|++|++++|.++ ..+. .+..+++|++|+|++|.+.+..|..+..+ ++|++|+|++|+++ .+|..+
T Consensus 195 --~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 195 --KFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp --SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred --cCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence 1678899999999997 3333 35788999999999999998878777666 69999999999999 556655
Q ss_pred hcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCC
Q 042366 263 LSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLT 308 (343)
Q Consensus 263 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~ 308 (343)
. ++|+.|++++|+|++. |. +..+..+..+++.+|++.
T Consensus 271 ~--~~L~~L~Ls~N~l~~~-~~------~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNRA-PQ------PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C--SCCSCEECCSCCCCSC-CC------TTSCCCCSCEECSSTTTS
T ss_pred c--CCCCEEECCCCcCCCC-ch------hhhCCCccEEECcCCCCC
Confidence 3 7999999999999753 32 223344566688888875
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.4e-23 Score=188.73 Aligned_cols=255 Identities=15% Similarity=0.124 Sum_probs=160.0
Q ss_pred cCCccccCCCccCeeecccccccccCCch----hhcCccCccEEEcccCccc---ccccccccccEEEeccCCCCCCcCc
Q 042366 36 RIPPSICSLSFLQYLSLSDNNLSGTIPPC----LGNFSTELITLHLKNNSLE---GHIHDTFANAIVNVENNMTSDSFPC 108 (343)
Q Consensus 36 ~~~~~~~~l~~L~~L~L~~n~i~~~~p~~----~~~~~~~L~~L~l~~n~l~---~~~~~~~~~~~l~l~~n~~~~~~~~ 108 (343)
.++..+..+++|++|+|++|.+++..+.. +..+ ++|++|++++|.+. +..|..+. .+..
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~-------------~l~~ 88 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALR-------------LLLQ 88 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHH-------------HHHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHH-------------HHHH
Confidence 46677888999999999999998554433 3344 48999999997543 33333332 1112
Q ss_pred cccCCCCcCEEEecCCccccc----CCCCCCccCCCCCcEEEeeCCcccccCCccc---ccCc---------cccccccc
Q 042366 109 WLGSLPVLKILVLRSNRFDGP----LCNSNITFPFQALRIIDLSHNEFTGFLPRRI---FPSM---------EAMKNVDE 172 (343)
Q Consensus 109 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~l---------~~L~~l~~ 172 (343)
.+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.++...+..+ +..+ ++|+.|++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFL--SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHH--HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHH--HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 234455666666666655431 11111 345556666666665542222111 1111 45555555
Q ss_pred cCcccccCCcccCcchhHHHHhccCeeeccCCcccc-----cCcccccCCCCCCEEEccCCcCc----cCCCccccccCC
Q 042366 173 QGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHG-----EIPEVLGNFKSLKVLNLSHNSLT----GNIPVSFENMTA 243 (343)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~ 243 (343)
+++.....+.. ........+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..+|..+..+++
T Consensus 167 ~~n~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 167 GRNRLENGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CSSCCTGGGHH-HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCcHHHH-HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 55432110000 000011236789999999999973 34447889999999999999995 467778889999
Q ss_pred CCeEeCCCCcCccc----cchhhhc--CCcCCeEeccCCcCee----cCCCCCccCCCCcccccCCCCCCCCCCCCCC
Q 042366 244 LESLDLSFNKLDGR----IPEQLLS--VTALALLNLSHSRLWG----RIPQGNQFNTFANDSYFGNIHLCGEPLTMRC 311 (343)
Q Consensus 244 L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~l~~N~l~~----~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C 311 (343)
|++|+|++|.+++. ++..+.. +++|+.|++++|.|++ .+|... +..+..+..+.+.+|++...+
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l----~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI----DEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH----HHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH----HhcCCCceEEEccCCcCCcch
Confidence 99999999999875 4566644 8999999999999976 244321 012234455677888887665
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=2.9e-21 Score=174.33 Aligned_cols=166 Identities=23% Similarity=0.253 Sum_probs=107.9
Q ss_pred CCcCEEEecCCcccccCCCCCCcc-CCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHH
Q 042366 114 PVLKILVLRSNRFDGPLCNSNITF-PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKI 192 (343)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (343)
..++.|++++|.+.+..+..+ . .+++|++|++++|.+++ ++...+..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~--~~~l~~L~~L~L~~N~i~~-i~~~~~~~----------------------------- 86 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWT--PTRLTNLHSLLLSHNHLNF-ISSEAFVP----------------------------- 86 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSS--SSCCTTCCEEECCSSCCCE-ECTTTTTT-----------------------------
T ss_pred CCCCEEECCCCCCCccChhhh--hhcccccCEEECCCCcCCc-cChhhccC-----------------------------
Confidence 457777888877776554444 3 67778888888877763 33222322
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhh---hcCCcCC
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL---LSVTALA 269 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~ 269 (343)
+++|++|+|++|.++...+..|..+++|++|+|++|.|.+..+..|..+++|++|+|++|+|++..+..| ..+++|+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 4566777777777776666677777888888888888877777777778888888888888876544444 4577788
Q ss_pred eEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCC
Q 042366 270 LLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSND 314 (343)
Q Consensus 270 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~ 314 (343)
.|+|++|+|++..+. .+..+... ....+.+.+|||.|+|...
T Consensus 167 ~L~L~~N~l~~l~~~--~~~~l~~~-~l~~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 167 LLDLSSNKLKKLPLT--DLQKLPAW-VKNGLYLHNNPLECDCKLY 208 (361)
T ss_dssp EEECCSSCCCCCCHH--HHHHSCHH-HHTTEECCSSCEECCHHHH
T ss_pred EEECCCCCCCccCHH--HhhhccHh-hcceEEecCCCccCCcCcH
Confidence 888888887532211 11111111 1245677788888888654
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.3e-20 Score=155.12 Aligned_cols=181 Identities=20% Similarity=0.193 Sum_probs=136.8
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcc
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 82 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l 82 (343)
+.++++++.++.......+++++|++++|++++..+..|.++++|++|+|++|.++ .++...+...++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcC
Confidence 56788888887655556889999999999999888888999999999999999998 66666554445999999999998
Q ss_pred cccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCccccc
Q 042366 83 EGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFP 162 (343)
Q Consensus 83 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 162 (343)
++.. +..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++ .++...+.
T Consensus 89 ~~~~--------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~-~~~~~~~~ 145 (208)
T 2o6s_A 89 QSLP--------------------NGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLK-SVPDGVFD 145 (208)
T ss_dssp CCCC--------------------TTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred CccC--------------------HhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccc-eeCHHHhc
Confidence 8433 3345678899999999998886554444 67889999999999887 44444343
Q ss_pred CccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccC
Q 042366 163 SMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 242 (343)
Q Consensus 163 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 242 (343)
. +++|++|++++|.+.+ .+++|+.|+++.|++.+.+|..++.++
T Consensus 146 ~-----------------------------l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 146 R-----------------------------LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp T-----------------------------CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred c-----------------------------CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 3 4556677777776542 345677777777777777777666554
Q ss_pred C
Q 042366 243 A 243 (343)
Q Consensus 243 ~ 243 (343)
.
T Consensus 190 ~ 190 (208)
T 2o6s_A 190 P 190 (208)
T ss_dssp T
T ss_pred C
Confidence 4
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=3.6e-20 Score=175.52 Aligned_cols=189 Identities=26% Similarity=0.350 Sum_probs=153.7
Q ss_pred CccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccC
Q 042366 1 NITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 80 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n 80 (343)
+|+.|++++|.+++.....+++|++|+|++|+|+ .+| ..+++|++|+|++|.++ .+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~---~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LPA---SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CCT---TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hhc---CCCEEECCCC
Confidence 4789999999998744335799999999999999 555 45789999999999999 5887 433 7999999999
Q ss_pred cccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCccc
Q 042366 81 SLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 160 (343)
Q Consensus 81 ~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 160 (343)
.|++ +|. .+++|+.|++++|.+.+ .+. .+++|++|++++|.+++ +|. +
T Consensus 131 ~l~~---------------------lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 131 QLTM---------------------LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp CCSC---------------------CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC-C
T ss_pred cCCC---------------------CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCC-cch-h
Confidence 9984 333 47899999999999986 332 46899999999999984 554 2
Q ss_pred ccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCC-------CEEEccCCcCccC
Q 042366 161 FPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSL-------KVLNLSHNSLTGN 233 (343)
Q Consensus 161 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~ 233 (343)
.++|++|+|++|.++ .+|. +.. +| +.|+|++|.|+ .
T Consensus 179 --------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~ 221 (571)
T 3cvr_A 179 --------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-H 221 (571)
T ss_dssp --------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-C
T ss_pred --------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-e
Confidence 246789999999998 5666 554 77 99999999999 5
Q ss_pred CCccccccCCCCeEeCCCCcCccccchhhhcCCc
Q 042366 234 IPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 267 (343)
Q Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (343)
+|..+..+++|+.|+|++|.+++..|..+..+..
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 7777778999999999999999988888776543
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=158.57 Aligned_cols=87 Identities=23% Similarity=0.237 Sum_probs=43.3
Q ss_pred hccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEec
Q 042366 194 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 273 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 273 (343)
++|++|++++|.+++..+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|++++..|..|..+++|+.|++
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 33444555555554444444445555555555555555444444555555555555555555444444545555555555
Q ss_pred cCCcCee
Q 042366 274 SHSRLWG 280 (343)
Q Consensus 274 ~~N~l~~ 280 (343)
++|.+.+
T Consensus 161 ~~N~l~c 167 (220)
T 2v70_A 161 LANPFNC 167 (220)
T ss_dssp CSCCEEC
T ss_pred cCcCCcC
Confidence 5554443
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.3e-21 Score=174.78 Aligned_cols=227 Identities=15% Similarity=0.125 Sum_probs=172.2
Q ss_pred CCCCcEEEccCCcccccCCccccCC--CccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEe
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSL--SFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNV 97 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l 97 (343)
...++.++++++.+. +..+..+ ++++.|++++|.+.+..+ .++.+. +|++|++++|.+++.
T Consensus 46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~-~L~~L~L~~~~l~~~------------ 108 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPF-RVQHMDLSNSVIEVS------------ 108 (336)
T ss_dssp STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCB-CCCEEECTTCEECHH------------
T ss_pred chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch-hhccCC-CCCEEEccCCCcCHH------------
Confidence 345889999998877 4566777 889999999999984444 466654 899999999987642
Q ss_pred ccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCC-cccccCCcccccCccccccccccCc-
Q 042366 98 ENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHN-EFTGFLPRRIFPSMEAMKNVDEQGR- 175 (343)
Q Consensus 98 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~l~~~~~- 175 (343)
.++..+..+++|++|++++|.+.+..+..+ ..+++|++|++++| .+++......+..+++|+.|+++++
T Consensus 109 -------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 109 -------TLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp -------HHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred -------HHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 134456778999999999999876555444 56899999999999 5764323344677889999999887
Q ss_pred ccccCCcccCcchhHHHHh-ccCeeeccCC--ccc-ccCcccccCCCCCCEEEccCCc-CccCCCccccccCCCCeEeCC
Q 042366 176 LEYMGGAFYDESITQKILV-MFRAMDFSSN--RFH-GEIPEVLGNFKSLKVLNLSHNS-LTGNIPVSFENMTALESLDLS 250 (343)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 250 (343)
.....+ .......++ +|++|++++| .++ ..++..+..+++|++|++++|. +++..+..+..+++|++|+++
T Consensus 180 ~l~~~~----~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 180 DFTEKH----VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp TCCHHH----HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CcChHH----HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 322110 001123367 9999999999 454 4567778889999999999999 776777788999999999999
Q ss_pred CCc-CccccchhhhcCCcCCeEeccCC
Q 042366 251 FNK-LDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 251 ~n~-l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
+|. +.......+..+++|+.|++++|
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 995 44333346788999999999999
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.5e-20 Score=157.69 Aligned_cols=161 Identities=23% Similarity=0.305 Sum_probs=115.0
Q ss_pred CEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhcc
Q 042366 117 KILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMF 196 (343)
Q Consensus 117 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 196 (343)
+.++++++.+.. .|..+ .++++.|++++|.++. ++...+.. +++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l----~~~l~~L~l~~n~i~~-i~~~~~~~-----------------------------l~~L 58 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL----PETITEIRLEQNTIKV-IPPGAFSP-----------------------------YKKL 58 (220)
T ss_dssp TEEECTTSCCSS-CCSSC----CTTCCEEECCSSCCCE-ECTTSSTT-----------------------------CTTC
T ss_pred CEEEcCCCCcCc-CCCcc----CcCCCEEECCCCcCCC-cCHhHhhC-----------------------------CCCC
Confidence 466667666654 22222 2567888888887763 33332322 4567
Q ss_pred CeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCC
Q 042366 197 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
++|+|++|.+++..|..|..+++|++|+|++|.++...+..|.++++|++|+|++|+|++..+..|..+++|+.|++++|
T Consensus 59 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 78888888888777788888888888888888888666667788888888888888888777778888888888888888
Q ss_pred cCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 042366 277 RLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGLP 317 (343)
Q Consensus 277 ~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~~ 317 (343)
.|++..+. .+..+..+..+++.+|||.|+|...|+.
T Consensus 139 ~l~~~~~~-----~~~~l~~L~~L~L~~N~~~c~c~l~~l~ 174 (220)
T 2v9t_B 139 KLQTIAKG-----TFSPLRAIQTMHLAQNPFICDCHLKWLA 174 (220)
T ss_dssp CCSCCCTT-----TTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred cCCEECHH-----HHhCCCCCCEEEeCCCCcCCCCccHHHH
Confidence 88655443 2333444556678888888888888764
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=8.3e-20 Score=164.05 Aligned_cols=214 Identities=19% Similarity=0.143 Sum_probs=143.4
Q ss_pred CccEEEccCCccccc---CCCCCCCCcEEEccCCcccc-cCCccccCCCccCe-eecccccccccCCchhhcCccCccEE
Q 042366 1 NITTLDLRNNRIQGS---ILVPPPSTEVFLVSNNKLSG-RIPPSICSLSFLQY-LSLSDNNLSGTIPPCLGNFSTELITL 75 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~---~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~-L~L~~n~i~~~~p~~~~~~~~~L~~L 75 (343)
++++|++++|+|+.. .|..+++|++|+|++|++.+ +.+.+|.+++++++ +.+++|+++ .++...+...++|++|
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhccccccc
Confidence 578999999999853 46679999999999999865 45568899998775 677789998 6655555555699999
Q ss_pred EcccCcccccccccccc----cEEEecc-CCCCCCcCccccCCC-CcCEEEecCCcccccCCCCCCccCCCCCcEEEeeC
Q 042366 76 HLKNNSLEGHIHDTFAN----AIVNVEN-NMTSDSFPCWLGSLP-VLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSH 149 (343)
Q Consensus 76 ~l~~n~l~~~~~~~~~~----~~l~l~~-n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 149 (343)
++++|.++...+..+.. ..+++.+ +.+....+..|..+. .++.|++++|++....+..+ ...+|+.+++++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~~ 186 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLSD 186 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS---TTEEEEEEECTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc---cccchhHHhhcc
Confidence 99999998765544433 3455543 334444444444442 45556666666654332222 234556666654
Q ss_pred -CcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCC
Q 042366 150 -NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHN 228 (343)
Q Consensus 150 -n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 228 (343)
|.++ .+|.+.|.. +++|++|++++|.++...+.. +.+|+.|.+.++
T Consensus 187 ~n~l~-~i~~~~f~~-----------------------------l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~ 233 (350)
T 4ay9_X 187 NNNLE-ELPNDVFHG-----------------------------ASGPVILDISRTRIHSLPSYG---LENLKKLRARST 233 (350)
T ss_dssp CTTCC-CCCTTTTTT-----------------------------EECCSEEECTTSCCCCCCSSS---CTTCCEEECTTC
T ss_pred CCccc-CCCHHHhcc-----------------------------CcccchhhcCCCCcCccChhh---hccchHhhhccC
Confidence 3333 444444333 667899999999999544433 567777776665
Q ss_pred -cCccCCCccccccCCCCeEeCCCCc
Q 042366 229 -SLTGNIPVSFENMTALESLDLSFNK 253 (343)
Q Consensus 229 -~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (343)
.++ .+| .+..+++|+.+++.++.
T Consensus 234 ~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 234 YNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred CCcC-cCC-CchhCcChhhCcCCCCc
Confidence 455 555 47889999999998653
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.7e-19 Score=162.69 Aligned_cols=104 Identities=28% Similarity=0.262 Sum_probs=48.6
Q ss_pred cEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhc-CccCccEEEcccCcccccccccccccEEEeccCCC
Q 042366 24 EVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGN-FSTELITLHLKNNSLEGHIHDTFANAIVNVENNMT 102 (343)
Q Consensus 24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~ 102 (343)
+++++++++++. +|..+. ..++.|+|++|.|+ .++...+. ..++|++|++++|+|+...
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~---------------- 80 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFIS---------------- 80 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEEC----------------
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccC----------------
Confidence 455555555552 333222 23555555555555 33333221 2235555555555554322
Q ss_pred CCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 103 SDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 103 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
+..|..+++|++|++++|.+....+..+ ..+++|++|++++|.++
T Consensus 81 ----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 81 ----SEAFVPVPNLRYLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNHIV 125 (361)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC
T ss_pred ----hhhccCCCCCCEEECCCCcCCcCCHHHh--CCCcCCCEEECCCCccc
Confidence 2233445555555555555554333333 44455555555555554
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=151.19 Aligned_cols=163 Identities=18% Similarity=0.270 Sum_probs=122.6
Q ss_pred CEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhcc
Q 042366 117 KILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMF 196 (343)
Q Consensus 117 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 196 (343)
+.+++++|.+.. +|..+ ...+++|++++|.+++..+.+.+.. +++|
T Consensus 14 ~~l~~s~n~l~~-iP~~~----~~~~~~L~L~~N~l~~~~~~~~~~~-----------------------------l~~L 59 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI----PQYTAELRLNNNEFTVLEATGIFKK-----------------------------LPQL 59 (220)
T ss_dssp TEEECCSSCCSS-CCSCC----CTTCSEEECCSSCCCEECCCCCGGG-----------------------------CTTC
T ss_pred CEeEeCCCCccc-CccCC----CCCCCEEEcCCCcCCccCchhhhcc-----------------------------CCCC
Confidence 466666666654 23222 2356778888887775444433322 5667
Q ss_pred CeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCC
Q 042366 197 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
++|++++|.+++..+..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|+|++..+..|..+++|+.|++++|
T Consensus 60 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 88888888888777778888999999999999998777778888999999999999999887888888999999999999
Q ss_pred cCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 042366 277 RLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGLPK 318 (343)
Q Consensus 277 ~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~~~ 318 (343)
+|++..|. .+..+..+..+++.+|||.|+|...|+..
T Consensus 140 ~l~~~~~~-----~~~~l~~L~~L~L~~N~l~c~c~l~~l~~ 176 (220)
T 2v70_A 140 QITTVAPG-----AFDTLHSLSTLNLLANPFNCNCYLAWLGE 176 (220)
T ss_dssp CCCCBCTT-----TTTTCTTCCEEECCSCCEECSGGGHHHHH
T ss_pred cCCEECHH-----HhcCCCCCCEEEecCcCCcCCCchHHHHH
Confidence 99776664 33444455667888999999998877643
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.5e-19 Score=147.33 Aligned_cols=175 Identities=20% Similarity=0.260 Sum_probs=140.9
Q ss_pred CeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCccc
Q 042366 48 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFD 127 (343)
Q Consensus 48 ~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 127 (343)
+.++++++.++ .+|..+. ++|++|++++|.+++. .+..+..+++|++|++++|.+.
T Consensus 10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~--------------------~~~~~~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSL--------------------PNGVFDELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCC--------------------CTTTTTTCTTCSEEECCSSCCC
T ss_pred CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcC--------------------ChhhhcccccCcEEECCCCccC
Confidence 56888888888 7776552 3799999999988743 2344667899999999999998
Q ss_pred ccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCccc
Q 042366 128 GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFH 207 (343)
Q Consensus 128 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 207 (343)
+..+..+ ..+++|++|++++|.++ .++...+.. +++|++|++++|.++
T Consensus 66 ~~~~~~~--~~l~~L~~L~Ls~n~l~-~~~~~~~~~-----------------------------l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 66 SLPNGVF--NKLTSLTYLNLSTNQLQ-SLPNGVFDK-----------------------------LTQLKELALNTNQLQ 113 (208)
T ss_dssp CCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT-----------------------------CTTCCEEECCSSCCC
T ss_pred ccChhhc--CCCCCcCEEECCCCcCC-ccCHhHhcC-----------------------------ccCCCEEEcCCCcCc
Confidence 6544444 67899999999999987 444433332 567889999999999
Q ss_pred ccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCC
Q 042366 208 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQG 285 (343)
Q Consensus 208 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 285 (343)
+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+ .+++|+.|++..|.++|.+|+.
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence 7777778899999999999999997777778999999999999998764 4568899999999999988864
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3e-19 Score=149.70 Aligned_cols=137 Identities=20% Similarity=0.263 Sum_probs=113.8
Q ss_pred CCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHH
Q 042366 114 PVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKIL 193 (343)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (343)
++|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..|.. +.. +
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~--~~l~~L~~L~Ls~N~i~~~~~~~-~~~-----------------------------l 79 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQISELAPDA-FQG-----------------------------L 79 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSS--TTCTTCCEEECCSSCCCEECTTT-TTT-----------------------------C
T ss_pred cCCCEEECCCCcCCCcCHhHh--hCCCCCCEEECCCCcCCCcCHHH-hhC-----------------------------C
Confidence 679999999999887665555 67889999999999988544433 322 5
Q ss_pred hccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEec
Q 042366 194 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 273 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 273 (343)
++|++|+|++|.++...+..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 67788999999998666677888999999999999999888888999999999999999999877778888999999999
Q ss_pred cCCcCeecC
Q 042366 274 SHSRLWGRI 282 (343)
Q Consensus 274 ~~N~l~~~~ 282 (343)
++|.+.+..
T Consensus 160 ~~N~~~c~c 168 (220)
T 2v9t_B 160 AQNPFICDC 168 (220)
T ss_dssp CSSCEECSG
T ss_pred CCCCcCCCC
Confidence 999987643
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.5e-19 Score=156.68 Aligned_cols=172 Identities=20% Similarity=0.319 Sum_probs=104.2
Q ss_pred cCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEe
Q 042366 42 CSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVL 121 (343)
Q Consensus 42 ~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l 121 (343)
..+++|++|++++|.++ .++ .+..+. +|++|++++|.+++. +. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~-~L~~L~L~~n~l~~~---------------------~~-l~~l~~L~~L~l 97 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ-GIQYLP-NVTKLFLNGNKLTDI---------------------KP-LANLKNLGWLFL 97 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCT-TCCEEECCSSCCCCC---------------------GG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcc-cCh-hHhcCC-CCCEEEccCCccCCC---------------------cc-cccCCCCCEEEC
Confidence 44556666666666665 443 244443 666666666666532 11 445666666666
Q ss_pred cCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeec
Q 042366 122 RSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDF 201 (343)
Q Consensus 122 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 201 (343)
++|.+.+.. . ...+++|++|++++|.++. ++ . +.. +++|++|++
T Consensus 98 ~~n~l~~~~--~--l~~l~~L~~L~L~~n~i~~-~~-~-l~~-----------------------------l~~L~~L~l 141 (291)
T 1h6t_A 98 DENKVKDLS--S--LKDLKKLKSLSLEHNGISD-IN-G-LVH-----------------------------LPQLESLYL 141 (291)
T ss_dssp CSSCCCCGG--G--GTTCTTCCEEECTTSCCCC-CG-G-GGG-----------------------------CTTCCEEEC
T ss_pred CCCcCCCCh--h--hccCCCCCEEECCCCcCCC-Ch-h-hcC-----------------------------CCCCCEEEc
Confidence 666665421 1 2456667777777666652 11 1 110 455677777
Q ss_pred cCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCee
Q 042366 202 SSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 202 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77777643 456677777777777777775444 66777777777777777753 3 36777777777777777743
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=5.3e-19 Score=154.61 Aligned_cols=172 Identities=23% Similarity=0.315 Sum_probs=141.4
Q ss_pred CCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEec
Q 042366 19 PPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVE 98 (343)
Q Consensus 19 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~ 98 (343)
.+++|+.|++++|.++.. + .+..+++|++|+|++|.++ .++. +..+. +|++|++++|.+++.
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~-~L~~L~l~~n~l~~~------------- 105 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LANLK-NLGWLFLDENKVKDL------------- 105 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTTCT-TCCEEECCSSCCCCG-------------
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cccCC-CCCEEECCCCcCCCC-------------
Confidence 388999999999999855 3 4889999999999999998 5655 66654 899999999998742
Q ss_pred cCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccc
Q 042366 99 NNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 178 (343)
Q Consensus 99 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~ 178 (343)
+ .+..+++|++|++++|.+.+. .. ...+++|++|++++|.+++. + . +.
T Consensus 106 --------~-~l~~l~~L~~L~L~~n~i~~~--~~--l~~l~~L~~L~l~~n~l~~~-~-~-l~---------------- 153 (291)
T 1h6t_A 106 --------S-SLKDLKKLKSLSLEHNGISDI--NG--LVHLPQLESLYLGNNKITDI-T-V-LS---------------- 153 (291)
T ss_dssp --------G-GGTTCTTCCEEECTTSCCCCC--GG--GGGCTTCCEEECCSSCCCCC-G-G-GG----------------
T ss_pred --------h-hhccCCCCCEEECCCCcCCCC--hh--hcCCCCCCEEEccCCcCCcc-h-h-hc----------------
Confidence 2 367799999999999999863 22 36789999999999998732 1 1 11
Q ss_pred cCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccc
Q 042366 179 MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 257 (343)
Q Consensus 179 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (343)
.+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|.++..
T Consensus 154 -------------~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 154 -------------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -------------GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred -------------cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 16788999999999986544 88999999999999999954 3 488999999999999999853
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.7e-18 Score=143.92 Aligned_cols=137 Identities=23% Similarity=0.233 Sum_probs=106.7
Q ss_pred CCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHH
Q 042366 114 PVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKIL 193 (343)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (343)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+. .++...+.. +
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~i~~~~~~~-----------------------------l 87 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLG-ALPVGVFDS-----------------------------L 87 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT-----------------------------C
T ss_pred CCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCCCCC-CcChhhccc-----------------------------C
Confidence 778888888888887656555 66788888888888886 445443333 4
Q ss_pred hccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEec
Q 042366 194 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 273 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 273 (343)
++|++|+|++|.+++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 56788888888888666677788888888888888888 66777788888888888888888766677888888888888
Q ss_pred cCCcCeecCC
Q 042366 274 SHSRLWGRIP 283 (343)
Q Consensus 274 ~~N~l~~~~p 283 (343)
++|.+.+..+
T Consensus 167 ~~N~~~c~c~ 176 (229)
T 3e6j_A 167 FGNPWDCECR 176 (229)
T ss_dssp TTSCBCTTBG
T ss_pred eCCCccCCcc
Confidence 8888876554
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2.7e-21 Score=185.67 Aligned_cols=276 Identities=11% Similarity=0.025 Sum_probs=136.5
Q ss_pred CccEEEccCCccccc-------CCCCCCCCcEEEccCCcccc----cCCccccCCCccCeeecccccccccCCchhhcCc
Q 042366 1 NITTLDLRNNRIQGS-------ILVPPPSTEVFLVSNNKLSG----RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFS 69 (343)
Q Consensus 1 ~L~~L~ls~n~l~~~-------~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~ 69 (343)
+|++|++++|.+++. .+..+++|++|++++|.+++ .++..+.++++|++|+|++|.+. .++..+....
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhh
Confidence 356666666665432 12235666666666666652 23333455666666666666665 3444444332
Q ss_pred cCccEEEcccCccc--------------------------ccccccccc----cEEEeccCCCCCCcC-ccccCCCCcCE
Q 042366 70 TELITLHLKNNSLE--------------------------GHIHDTFAN----AIVNVENNMTSDSFP-CWLGSLPVLKI 118 (343)
Q Consensus 70 ~~L~~L~l~~n~l~--------------------------~~~~~~~~~----~~l~l~~n~~~~~~~-~~~~~l~~L~~ 118 (343)
+|++|+++..... ...+..+.. +.|++++|.+..... ..+..+++|+.
T Consensus 244 -~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 244 -NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp -TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred -HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 5555555422110 011111111 788888888654333 33566777777
Q ss_pred EEecCCcccccCCCCCCccCCCCCcEEEee------------------------------------CCcccccCCccccc
Q 042366 119 LVLRSNRFDGPLCNSNITFPFQALRIIDLS------------------------------------HNEFTGFLPRRIFP 162 (343)
Q Consensus 119 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~------------------------------------~n~l~~~~~~~~~~ 162 (343)
|+++ +.+.+.....+ ...+++|++|+++ .+.+++..+..+..
T Consensus 323 L~L~-~~~~~~~l~~~-~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 323 LETR-NVIGDRGLEVL-AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEE-GGGHHHHHHHH-HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred Eecc-CccCHHHHHHH-HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 7776 33322110000 1234555555555 33333222222222
Q ss_pred CccccccccccCcc--cccCCcccCcch--hHHHHhccCeeeccCCc--ccccCcccc-cCCCCCCEEEccCCcCccC-C
Q 042366 163 SMEAMKNVDEQGRL--EYMGGAFYDESI--TQKILVMFRAMDFSSNR--FHGEIPEVL-GNFKSLKVLNLSHNSLTGN-I 234 (343)
Q Consensus 163 ~l~~L~~l~~~~~~--~~~~~~~~~~~~--~~~~~~~L~~L~Ls~n~--l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~-~ 234 (343)
.+++|+.|++.+.. ..+.+.-....+ ....+++|++|++++|. +++..+..+ ..+++|++|++++|.+++. .
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 23344444432110 000000000000 11225667777776433 443333333 3367788888887777642 3
Q ss_pred CccccccCCCCeEeCCCCcCccc-cchhhhcCCcCCeEeccCCcCee
Q 042366 235 PVSFENMTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
+..+.++++|+.|++++|.+++. .+..+..+++|+.|++++|++++
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 33446677788888888877654 23334567778888888887753
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=5.2e-19 Score=169.15 Aligned_cols=81 Identities=23% Similarity=0.378 Sum_probs=41.5
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEe
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 272 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (343)
+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.|++. ..+..+++|+.|+
T Consensus 130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 203 (605)
T ss_dssp CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEE
T ss_pred CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEE
Confidence 34455555555555432 344555555555555555554333 45555555555555555532 2345555555555
Q ss_pred ccCCcCe
Q 042366 273 LSHSRLW 279 (343)
Q Consensus 273 l~~N~l~ 279 (343)
|++|+++
T Consensus 204 L~~N~l~ 210 (605)
T 1m9s_A 204 LFSQECL 210 (605)
T ss_dssp CCSEEEE
T ss_pred ccCCcCc
Confidence 5555553
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.8e-18 Score=165.44 Aligned_cols=173 Identities=23% Similarity=0.322 Sum_probs=133.2
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
+++|+.|++++|.+... + .|..+++|+.|+|++|.++ .++. +..+. +|++|++++|.+++
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~-~L~~L~Ls~N~l~~--------------- 101 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLK-NLGWLFLDENKIKD--------------- 101 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG-GGGCT-TCCEEECCSSCCCC---------------
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh-hccCC-CCCEEECcCCCCCC---------------
Confidence 77788888888888743 3 4777888888888888887 4444 55554 78888888888763
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCccccc
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 179 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~ 179 (343)
++ .+..+++|+.|++++|.+.+. .. +..+++|+.|+|++|.+++. + .+..
T Consensus 102 ------l~-~l~~l~~L~~L~Ls~N~l~~l--~~--l~~l~~L~~L~Ls~N~l~~l-~--~l~~---------------- 151 (605)
T 1m9s_A 102 ------LS-SLKDLKKLKSLSLEHNGISDI--NG--LVHLPQLESLYLGNNKITDI-T--VLSR---------------- 151 (605)
T ss_dssp ------CT-TSTTCTTCCEEECTTSCCCCC--GG--GGGCTTCSEEECCSSCCCCC-G--GGGS----------------
T ss_pred ------Ch-hhccCCCCCEEEecCCCCCCC--cc--ccCCCccCEEECCCCccCCc-h--hhcc----------------
Confidence 12 466788999999999988763 22 36788899999999888732 1 1111
Q ss_pred CCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccc
Q 042366 180 GGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 259 (343)
Q Consensus 180 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (343)
+++|+.|+|++|.+.+..| +..+++|+.|+|++|.|.+. ..+..+++|+.|+|++|.+.+...
T Consensus 152 -------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 152 -------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred -------------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 6788999999999996655 88999999999999999964 358899999999999999986533
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=7.6e-19 Score=144.13 Aligned_cols=120 Identities=27% Similarity=0.375 Sum_probs=104.0
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEe
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 272 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (343)
.+.|++|++++|.++ .+|..|..+++|++|+|++|.|++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 456899999999998 6778999999999999999999988888999999999999999999988888999999999999
Q ss_pred ccCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 042366 273 LSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDGLPK 318 (343)
Q Consensus 273 l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~~~~ 318 (343)
|++|.|++..+. .+..+..+..+++.+|||.|+|...|+..
T Consensus 109 L~~N~l~~~~~~-----~~~~l~~L~~L~L~~N~~~C~c~l~~l~~ 149 (193)
T 2wfh_A 109 LHGNDISVVPEG-----AFNDLSALSHLAIGANPLYCDCNMQWLSD 149 (193)
T ss_dssp CCSSCCCBCCTT-----TTTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CCCCCCCeeChh-----hhhcCccccEEEeCCCCeecCCcCHHHHH
Confidence 999999654433 34444556677899999999999888654
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.3e-17 Score=140.51 Aligned_cols=147 Identities=22% Similarity=0.213 Sum_probs=100.5
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcc
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 82 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l 82 (343)
+.++++++.++.......++|++|+|++|++++..+..|.++++|++|+|++|.++ .+|...+...++|++|++++|.|
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcC
Confidence 57888888887655556899999999999999988999999999999999999998 77766655556999999999999
Q ss_pred cccccccccc----cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 83 EGHIHDTFAN----AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 83 ~~~~~~~~~~----~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
++..+..|.. +.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBC
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCcc
Confidence 8665544433 44555555544 334444444555555555555443322222 33445555555555443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.9e-18 Score=148.76 Aligned_cols=169 Identities=16% Similarity=0.201 Sum_probs=98.5
Q ss_pred CCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecC
Q 042366 44 LSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRS 123 (343)
Q Consensus 44 l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 123 (343)
+.++..+++++|.++ .++ .+..+. +|++|++++|.++. ++ .+..+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~l~-~L~~L~l~~n~i~~---------------------l~-~l~~l~~L~~L~L~~ 72 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKELS-GVQNFNGDNSNIQS---------------------LA-GMQFFTNLKELHLSH 72 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHHHT-TCSEEECTTSCCCC---------------------CT-TGGGCTTCCEEECCS
T ss_pred HHHHHHHHhcCCCcc-ccc-chhhcC-cCcEEECcCCCccc---------------------ch-HHhhCCCCCEEECCC
Confidence 444555566666665 333 233333 56666666665552 12 234456666666666
Q ss_pred CcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccC
Q 042366 124 NRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSS 203 (343)
Q Consensus 124 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 203 (343)
|.+.+..+ +..+++|++|++++|.+++ ++... .++|++|++++
T Consensus 73 N~i~~~~~----l~~l~~L~~L~L~~N~l~~-l~~~~--------------------------------~~~L~~L~L~~ 115 (263)
T 1xeu_A 73 NQISDLSP----LKDLTKLEELSVNRNRLKN-LNGIP--------------------------------SACLSRLFLDN 115 (263)
T ss_dssp SCCCCCGG----GTTCSSCCEEECCSSCCSC-CTTCC--------------------------------CSSCCEEECCS
T ss_pred CccCCChh----hccCCCCCEEECCCCccCC-cCccc--------------------------------cCcccEEEccC
Confidence 66554322 2455666666666666552 22100 13456666677
Q ss_pred CcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCee
Q 042366 204 NRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 204 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
|.+++. + .+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|.+++
T Consensus 116 N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 116 NELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 766632 2 466677777777777777644 2 466677777777777777754 556677777777777777754
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=2.1e-18 Score=141.35 Aligned_cols=136 Identities=22% Similarity=0.360 Sum_probs=98.8
Q ss_pred cEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcc-cccCCCCCC
Q 042366 143 RIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPE-VLGNFKSLK 221 (343)
Q Consensus 143 ~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~ 221 (343)
++++++++.++ .+|..+ ...+++|++++|.+++..+. .|..+++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~--------------------------------~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~ 57 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI--------------------------------PLHTTELLLNDNELGRISSDGLFGRLPHLV 57 (192)
T ss_dssp TEEECTTSCCS-SCCSCC--------------------------------CTTCSEEECCSCCCCSBCCSCSGGGCTTCC
T ss_pred CEEEcCCCCcC-cCccCC--------------------------------CCCCCEEECCCCcCCccCCccccccCCCCC
Confidence 67888888886 666543 23567788888887755543 477788888
Q ss_pred EEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCCCcccccCCCC
Q 042366 222 VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTFANDSYFGNIH 301 (343)
Q Consensus 222 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~ 301 (343)
+|+|++|.+++..|..|.++++|++|+|++|+|++..+..|..+++|+.|++++|+|++..|.. +..+..+..++
T Consensus 58 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~ 132 (192)
T 1w8a_A 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-----FEHLNSLTSLN 132 (192)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-----STTCTTCCEEE
T ss_pred EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-----hhcCCCCCEEE
Confidence 8888888888777777888888888888888888777777777888888888888887766652 33334445567
Q ss_pred CCCCCCCCCCCCCCC
Q 042366 302 LCGEPLTMRCSNDGL 316 (343)
Q Consensus 302 l~~np~~~~C~~~~~ 316 (343)
+.+|||.|+|...|+
T Consensus 133 L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 133 LASNPFNCNCHLAWF 147 (192)
T ss_dssp CTTCCBCCSGGGHHH
T ss_pred eCCCCccCcCcchHH
Confidence 778888888876665
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=6.1e-18 Score=139.24 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=107.3
Q ss_pred CccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCC
Q 042366 71 ELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHN 150 (343)
Q Consensus 71 ~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 150 (343)
+|++|++++|.++ .+| .+..+++|++|++++|.+... ..+ ..+++|++|++++|
T Consensus 45 ~L~~L~l~~n~i~---------------------~l~-~l~~l~~L~~L~l~~n~~~~~--~~l--~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 45 SLTYITLANINVT---------------------DLT-GIEYAHNIKDLTINNIHATNY--NPI--SGLSNLERLRIMGK 98 (197)
T ss_dssp TCCEEEEESSCCS---------------------CCT-TGGGCTTCSEEEEESCCCSCC--GGG--TTCTTCCEEEEECT
T ss_pred CccEEeccCCCcc---------------------ChH-HHhcCCCCCEEEccCCCCCcc--hhh--hcCCCCCEEEeECC
Confidence 6777777777766 223 345567777777777755432 222 56778888888888
Q ss_pred cccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCc-
Q 042366 151 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNS- 229 (343)
Q Consensus 151 ~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~- 229 (343)
.+++..+..+ .. +++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 99 ~l~~~~~~~l-~~-----------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~ 148 (197)
T 4ezg_A 99 DVTSDKIPNL-SG-----------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148 (197)
T ss_dssp TCBGGGSCCC-TT-----------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB
T ss_pred ccCcccChhh-cC-----------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC
Confidence 8775444331 11 5667888888888887778888889999999999998
Q ss_pred CccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCe
Q 042366 230 LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLW 279 (343)
Q Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 279 (343)
+.. ++ .+..+++|++|++++|.+++. + .+..+++|+.|++++|+|.
T Consensus 149 i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 149 ITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 664 44 578889999999999999863 3 6788899999999999984
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.2e-17 Score=137.48 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=118.0
Q ss_pred cCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhH
Q 042366 111 GSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQ 190 (343)
Q Consensus 111 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 190 (343)
..+++|+.|++++|.+... + .+ ..+++|++|++++|.++ .++ . +..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l--~~l~~L~~L~l~~n~~~-~~~-~-l~~--------------------------- 86 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GI--EYAHNIKDLTINNIHAT-NYN-P-ISG--------------------------- 86 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TG--GGCTTCSEEEEESCCCS-CCG-G-GTT---------------------------
T ss_pred hhcCCccEEeccCCCccCh-H-HH--hcCCCCCEEEccCCCCC-cch-h-hhc---------------------------
Confidence 4568899999999998842 2 33 67899999999999765 221 1 111
Q ss_pred HHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCc-CccccchhhhcCCcCC
Q 042366 191 KILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK-LDGRIPEQLLSVTALA 269 (343)
Q Consensus 191 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 269 (343)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|. +++ ++ .+..+++|+
T Consensus 87 --l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~ 162 (197)
T 4ezg_A 87 --LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELK 162 (197)
T ss_dssp --CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCC
T ss_pred --CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCC
Confidence 6778999999999997788889999999999999999998788889999999999999998 764 44 688999999
Q ss_pred eEeccCCcCeecCCCCCccCCCCcccccCCCCCCCCCC
Q 042366 270 LLNLSHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPL 307 (343)
Q Consensus 270 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~ 307 (343)
.|++++|.+++. + .+..+..+..+++.+|++
T Consensus 163 ~L~l~~n~i~~~-~------~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 163 SLNIQFDGVHDY-R------GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECTTBCCCCC-T------TGGGCSSCCEEEECBC--
T ss_pred EEECCCCCCcCh-H------HhccCCCCCEEEeeCccc
Confidence 999999999652 2 222333344456666654
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.2e-18 Score=147.38 Aligned_cols=170 Identities=20% Similarity=0.241 Sum_probs=128.8
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
+.+++.++++++.++... .+..+++|++|++++|.++ .++ .+..+. +|++|++++|++++.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~L~~N~i~~~-------------- 78 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFT-NLKELHLSHNQISDL-------------- 78 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCT-TCCEEECCSSCCCCC--------------
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCC-CCCEEECCCCccCCC--------------
Confidence 556677788888888543 5778889999999999888 676 566654 899999999988742
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCccccc
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 179 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~ 179 (343)
+. +..+++|++|++++|++.+... . .. ++|++|++++|.+++ ++ . +..
T Consensus 79 -------~~-l~~l~~L~~L~L~~N~l~~l~~--~--~~-~~L~~L~L~~N~l~~-~~-~-l~~---------------- 126 (263)
T 1xeu_A 79 -------SP-LKDLTKLEELSVNRNRLKNLNG--I--PS-ACLSRLFLDNNELRD-TD-S-LIH---------------- 126 (263)
T ss_dssp -------GG-GTTCSSCCEEECCSSCCSCCTT--C--CC-SSCCEEECCSSCCSB-SG-G-GTT----------------
T ss_pred -------hh-hccCCCCCEEECCCCccCCcCc--c--cc-CcccEEEccCCccCC-Ch-h-hcC----------------
Confidence 22 6678889999999998876322 1 22 789999999998873 22 1 111
Q ss_pred CCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccc
Q 042366 180 GGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 257 (343)
Q Consensus 180 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (343)
+++|++|++++|.+++. + .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++.
T Consensus 127 -------------l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 127 -------------LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -------------CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -------------cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 56788889999988854 3 678889999999999999865 5678888999999999988754
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=3e-20 Score=178.43 Aligned_cols=66 Identities=12% Similarity=0.003 Sum_probs=41.1
Q ss_pred cCCCCCCEEEccCCc--CccCCCccc-cccCCCCeEeCCCCcCccc-cchhhhcCCcCCeEeccCCcCee
Q 042366 215 GNFKSLKVLNLSHNS--LTGNIPVSF-ENMTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 215 ~~l~~L~~L~Ls~n~--l~~~~~~~~-~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~ 280 (343)
..+++|++|++++|. +.+..+..+ ..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 344555555554322 332222222 2367888888888888763 34455778899999999998754
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.1e-20 Score=176.58 Aligned_cols=200 Identities=24% Similarity=0.259 Sum_probs=140.4
Q ss_pred cCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEE-
Q 042366 42 CSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILV- 120 (343)
Q Consensus 42 ~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~- 120 (343)
..+++|+.|+|++|.++ .+|..+..+. +|+.|++++|......+.. +..+...+..|..+..+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~l-------l~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILL-------MRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHH-------HHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHH-------HHhcccccCCHHHHHHHHhcccCcc
Confidence 56788999999999998 8898888886 8999998766421111100 011122234555666667777776
Q ss_pred ecCCcccccCCC-----CCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhc
Q 042366 121 LRSNRFDGPLCN-----SNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVM 195 (343)
Q Consensus 121 l~~n~l~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (343)
++.|.+...... .+.......|+.|++++|.+++ +|. +.. +++
T Consensus 417 l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~--~~~-----------------------------l~~ 464 (567)
T 1dce_A 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH--LEQ-----------------------------LLL 464 (567)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC--GGG-----------------------------GTT
T ss_pred hhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC--ccc-----------------------------ccc
Confidence 444433210000 0000112358889999888873 443 221 667
Q ss_pred cCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCcccc-chhhhcCCcCCeEecc
Q 042366 196 FRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI-PEQLLSVTALALLNLS 274 (343)
Q Consensus 196 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~ 274 (343)
|++|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|+|++.. |..+..+++|+.|+++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 889999999998 778889999999999999999995 55 7888999999999999999776 8889999999999999
Q ss_pred CCcCeecCCCC
Q 042366 275 HSRLWGRIPQG 285 (343)
Q Consensus 275 ~N~l~~~~p~~ 285 (343)
+|.+++..|..
T Consensus 542 ~N~l~~~~~~~ 552 (567)
T 1dce_A 542 GNSLCQEEGIQ 552 (567)
T ss_dssp TSGGGGSSSCT
T ss_pred CCcCCCCccHH
Confidence 99997766543
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.4e-17 Score=136.42 Aligned_cols=133 Identities=16% Similarity=0.201 Sum_probs=91.4
Q ss_pred CEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhcc
Q 042366 117 KILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMF 196 (343)
Q Consensus 117 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 196 (343)
+.++++++.+.. .|..+ ..++++|++++|.+++..+...+.. +++|
T Consensus 11 ~~l~~s~~~l~~-ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~-----------------------------l~~L 56 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDI----PLHTTELLLNDNELGRISSDGLFGR-----------------------------LPHL 56 (192)
T ss_dssp TEEECTTSCCSS-CCSCC----CTTCSEEECCSCCCCSBCCSCSGGG-----------------------------CTTC
T ss_pred CEEEcCCCCcCc-CccCC----CCCCCEEECCCCcCCccCCcccccc-----------------------------CCCC
Confidence 566777776643 23322 2367777777777764333222222 4566
Q ss_pred CeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCC
Q 042366 197 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|+.|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 77777777777666777777788888888888887777777777788888888888887777777777778888888888
Q ss_pred cCeecCC
Q 042366 277 RLWGRIP 283 (343)
Q Consensus 277 ~l~~~~p 283 (343)
.+++..+
T Consensus 137 ~l~c~c~ 143 (192)
T 1w8a_A 137 PFNCNCH 143 (192)
T ss_dssp CBCCSGG
T ss_pred CccCcCc
Confidence 7766554
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.5e-18 Score=169.87 Aligned_cols=213 Identities=19% Similarity=0.150 Sum_probs=72.8
Q ss_pred ccEEEccCCcccccCCCCCCCCcEEEccCCcccc---------cCCccccCCCccCeeecccccccccCCchhhcCccCc
Q 042366 2 ITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSG---------RIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTEL 72 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L 72 (343)
++.|+++++.+... ....++.++|+.+.|.+ ..++.|..+..|+.|+|++|.+. .+|..++.+. +|
T Consensus 175 ~~~l~L~~n~~~~~---~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-~L 249 (727)
T 4b8c_D 175 TPKIELFANGKDEA---NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD-FL 249 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC-SC
T ss_pred cceEEeeCCCCCcc---hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCC-CC
Confidence 34566666666542 12223334444443332 44677788888888888888887 7887777765 78
Q ss_pred cEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcc
Q 042366 73 ITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEF 152 (343)
Q Consensus 73 ~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 152 (343)
++|+|++|.|+ .+ |..+..+++|++|+|++|.+. ..|..+ ..+++|++|+|++|.+
T Consensus 250 ~~L~Ls~N~l~-~l--------------------p~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 250 TRLYLNGNSLT-EL--------------------PAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLKYFYFFDNMV 305 (727)
T ss_dssp SCCBCTTSCCS-CC--------------------CGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCSEEECCSSCC
T ss_pred CEEEeeCCcCc-cc--------------------ChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCCEEECCCCCC
Confidence 88888888887 33 333344445555555555444 223332 3444455555555544
Q ss_pred cccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCC----
Q 042366 153 TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHN---- 228 (343)
Q Consensus 153 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n---- 228 (343)
+ .+|.. +..+.+|+.|++++|...... . .........+..+++++|.+++..|. .|+.|+++.|
T Consensus 306 ~-~lp~~-~~~l~~L~~L~L~~N~l~~~~---p-~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~ 373 (727)
T 4b8c_D 306 T-TLPWE-FGNLCNLQFLGVEGNPLEKQF---L-KILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQ 373 (727)
T ss_dssp C-CCCSS-TTSCTTCCCEECTTSCCCSHH---H-HHHHHHHHHHHHHHHHHCCCCCCCCC------C-------------
T ss_pred C-ccChh-hhcCCCccEEeCCCCccCCCC---h-HHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccc
Confidence 4 33433 333333333333332110000 0 00000011122466777777766554 3445556555
Q ss_pred ----cCccCCCccccccCCCCeEeCCCCcCc
Q 042366 229 ----SLTGNIPVSFENMTALESLDLSFNKLD 255 (343)
Q Consensus 229 ----~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (343)
.+.+..+..+..+..+....+++|-+.
T Consensus 374 ~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 374 REYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----------------------------CCC
T ss_pred cccCCccccccchhhcccccceeeeeccccc
Confidence 222223333444555555666666654
No 120
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=3.9e-19 Score=170.67 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=31.2
Q ss_pred ccCCCCCCEEEccCCcCccCCCccccc-cCCCCeEeCCCCcCccccchhh-hcCCcCCeEeccCCcC
Q 042366 214 LGNFKSLKVLNLSHNSLTGNIPVSFEN-MTALESLDLSFNKLDGRIPEQL-LSVTALALLNLSHSRL 278 (343)
Q Consensus 214 l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l 278 (343)
+..+++|++|++++ .+.+..+..+.. +++|++|+|++|.+++.....+ ..+++|+.|++++|.+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 33445555555544 333222222222 4556666666666554333333 4455666666666655
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.6e-16 Score=141.43 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=78.8
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCC-eEeCCCCcCccccchhhhcCCcCCeE
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE-SLDLSFNKLDGRIPEQLLSVTALALL 271 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (343)
+++|+.+++++|.++.+.+..|.++++|++++|..| +..+.+.+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999999777888999999999999998 8778888999999999 999998 7877778899999999999
Q ss_pred eccCCcCeecCC
Q 042366 272 NLSHSRLWGRIP 283 (343)
Q Consensus 272 ~l~~N~l~~~~p 283 (343)
++++|.++...+
T Consensus 303 ~l~~n~i~~I~~ 314 (329)
T 3sb4_A 303 LATGDKITTLGD 314 (329)
T ss_dssp EECSSCCCEECT
T ss_pred EeCCCccCccch
Confidence 999999955443
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.1e-19 Score=170.81 Aligned_cols=204 Identities=18% Similarity=0.121 Sum_probs=156.5
Q ss_pred CCCCCCcEEEccCCcccccCCccccCCCccCeeeccccc-------------ccccCCchhhcCccCccEEE-cccCccc
Q 042366 18 VPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNN-------------LSGTIPPCLGNFSTELITLH-LKNNSLE 83 (343)
Q Consensus 18 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~p~~~~~~~~~L~~L~-l~~n~l~ 83 (343)
...++|+.|+|++|+++ .+|..++.+++|+.|++++|. +.+..|..+..+. +|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-hcccCcchhhcccc
Confidence 44889999999999998 679999999999999998775 4445566666665 788888 6766554
Q ss_pred ccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccC
Q 042366 84 GHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPS 163 (343)
Q Consensus 84 ~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 163 (343)
.... +.+++|.+.... ...|+.|++++|.+.+. |. + ..+++|+.|++++|.++ .+|..+ ..
T Consensus 424 ~L~~-------l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~l-p~-~--~~l~~L~~L~Ls~N~l~-~lp~~~-~~ 484 (567)
T 1dce_A 424 DLRS-------KFLLENSVLKME------YADVRVLHLAHKDLTVL-CH-L--EQLLLVTHLDLSHNRLR-ALPPAL-AA 484 (567)
T ss_dssp HHHH-------HHHHHHHHHHHH------HTTCSEEECTTSCCSSC-CC-G--GGGTTCCEEECCSSCCC-CCCGGG-GG
T ss_pred hhhh-------hhhhcccccccC------ccCceEEEecCCCCCCC-cC-c--cccccCcEeecCccccc-ccchhh-hc
Confidence 2211 122222222111 13589999999999873 43 3 77899999999999998 667543 21
Q ss_pred ccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCC-CccccccC
Q 042366 164 MEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMT 242 (343)
Q Consensus 164 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 242 (343)
+++|++|+|++|.+++ +| .+..+++|++|+|++|.+++.. |..++.++
T Consensus 485 -----------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 485 -----------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533 (567)
T ss_dssp -----------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred -----------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence 6778999999999995 66 7899999999999999999776 89999999
Q ss_pred CCCeEeCCCCcCccccch---hhhcCCcCCeEec
Q 042366 243 ALESLDLSFNKLDGRIPE---QLLSVTALALLNL 273 (343)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l 273 (343)
+|+.|+|++|.+++..+. .+..+++|+.|++
T Consensus 534 ~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999976442 3445888998864
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2.2e-18 Score=165.43 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=67.7
Q ss_pred HHhccCeeeccCCcccccCcccccC-CCCCCEEEccCCcCccCCCccc-cccCCCCeEeCCCCcCccccch-hhhcCCcC
Q 042366 192 ILVMFRAMDFSSNRFHGEIPEVLGN-FKSLKVLNLSHNSLTGNIPVSF-ENMTALESLDLSFNKLDGRIPE-QLLSVTAL 268 (343)
Q Consensus 192 ~~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L 268 (343)
.+++|++|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|+.|+|++|.+++.... ....+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 367899999977 666555555544 8999999999999876554444 6689999999999999755443 44568999
Q ss_pred CeEeccCCcCe
Q 042366 269 ALLNLSHSRLW 279 (343)
Q Consensus 269 ~~L~l~~N~l~ 279 (343)
+.|++++|+++
T Consensus 509 ~~L~l~~~~~~ 519 (594)
T 2p1m_B 509 RSLWMSSCSVS 519 (594)
T ss_dssp SEEEEESSCCB
T ss_pred CEEeeeCCCCC
Confidence 99999999984
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=6.3e-16 Score=124.83 Aligned_cols=114 Identities=23% Similarity=0.251 Sum_probs=68.5
Q ss_pred hccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEec
Q 042366 194 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 273 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 273 (343)
+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34566666666666555555666666666666666666555555666666666666666666555555666666666666
Q ss_pred cCCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCC
Q 042366 274 SHSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCS 312 (343)
Q Consensus 274 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~ 312 (343)
++|.+++..+. .+.....+..+++.+||+.|+|.
T Consensus 108 ~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDG-----IFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTT-----TTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHH-----HhcCCcccCEEEecCCCeeccCc
Confidence 66666433221 12223333445666666666665
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=6.6e-17 Score=158.21 Aligned_cols=192 Identities=19% Similarity=0.168 Sum_probs=107.4
Q ss_pred ccEEEccCCcccc------------cCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCc
Q 042366 2 ITTLDLRNNRIQG------------SILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFS 69 (343)
Q Consensus 2 L~~L~ls~n~l~~------------~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~ 69 (343)
++.++|+.+.|.+ ..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..+..+.
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 270 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS 270 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT
T ss_pred hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC
Confidence 3456666666543 22455899999999999999 56666779999999999999999 9999888875
Q ss_pred cCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeC
Q 042366 70 TELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSH 149 (343)
Q Consensus 70 ~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 149 (343)
+|++|+|++|.|+ .+|..+..+++|++|+|++|.+.. .|..+ ..+++|++|+|++
T Consensus 271 -~L~~L~Ls~N~l~---------------------~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~--~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 271 -NLRVLDLSHNRLT---------------------SLPAELGSCFQLKYFYFFDNMVTT-LPWEF--GNLCNLQFLGVEG 325 (727)
T ss_dssp -TCCEEECTTSCCS---------------------SCCSSGGGGTTCSEEECCSSCCCC-CCSST--TSCTTCCCEECTT
T ss_pred -CCCEEeCcCCcCC---------------------ccChhhcCCCCCCEEECCCCCCCc-cChhh--hcCCCccEEeCCC
Confidence 8999999999998 446667778999999999998873 45554 7789999999999
Q ss_pred CcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCC--------cccccCcccccCCCCCC
Q 042366 150 NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSN--------RFHGEIPEVLGNFKSLK 221 (343)
Q Consensus 150 n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--------~l~~~~~~~l~~l~~L~ 221 (343)
|.+++.+|..+.........+++.++.... ..+..|+.|+++.| .+.+..+..+..+..+.
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-----------~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~ 394 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEI-----------PLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRT 394 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-----------CCCCC----------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccC-----------cCccccceeEeecccccccccCCccccccchhhcccccc
Confidence 999876665432221222223444433211 01456777888777 33333344455666777
Q ss_pred EEEccCCcCc
Q 042366 222 VLNLSHNSLT 231 (343)
Q Consensus 222 ~L~Ls~n~l~ 231 (343)
...+++|-+.
T Consensus 395 ~~~ls~Nil~ 404 (727)
T 4b8c_D 395 FTVLSYNTLC 404 (727)
T ss_dssp -------CCC
T ss_pred eeeeeccccc
Confidence 7788888765
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=7.8e-16 Score=123.16 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=109.0
Q ss_pred CCCcCEEEecCCccc-ccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHH
Q 042366 113 LPVLKILVLRSNRFD-GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQK 191 (343)
Q Consensus 113 l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 191 (343)
.++|+.|++++|.+. +..+..+ ..+++|++|++++|.+++. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~---------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLINVGLISV---SNLPK---------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCC--GGGGGCCEEEEESSCCCCC---SSCCC----------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHH--HhCCCCCEEeCcCCCCCCh---hhhcc----------------------------
Confidence 478999999999987 4455544 6788999999999988743 11221
Q ss_pred HHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCC-ccccccCCCCeEeCCCCcCccccc---hhhhcCCc
Q 042366 192 ILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGRIP---EQLLSVTA 267 (343)
Q Consensus 192 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~ 267 (343)
+++|++|++++|.+++..|..+..+++|++|++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++
T Consensus 70 -l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 70 -LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp -CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred -CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 5678999999999997788888889999999999999986432 678899999999999999997655 47889999
Q ss_pred CCeEeccCCcCee
Q 042366 268 LALLNLSHSRLWG 280 (343)
Q Consensus 268 L~~L~l~~N~l~~ 280 (343)
|+.|++++|.+..
T Consensus 149 L~~L~l~~n~~~~ 161 (168)
T 2ell_A 149 LTYLDGYDREDQE 161 (168)
T ss_dssp CCEETTEETTSCB
T ss_pred CcEecCCCCChhh
Confidence 9999999999843
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2.4e-16 Score=140.25 Aligned_cols=163 Identities=12% Similarity=0.057 Sum_probs=109.1
Q ss_pred CCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCccc-----ccC-CcccCc
Q 042366 113 LPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE-----YMG-GAFYDE 186 (343)
Q Consensus 113 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-----~~~-~~~~~~ 186 (343)
+++|+.|++.+ .+.......| ..+++|+.|++++|.+. .++...|..+..+..+....... .+. ..+...
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF--~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAF--KGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTT--TTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccchhHHHh--hcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 88999999988 6765545555 77889999999998887 66667777777777666554221 001 011000
Q ss_pred -------------chhHH------HHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeE
Q 042366 187 -------------SITQK------ILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL 247 (343)
Q Consensus 187 -------------~~~~~------~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 247 (343)
.+... ...+++.+.+.++-...........+++|+.++|++|.++.+.+..|.++++|++|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 00000 03344455554432211111111237999999999999998888899999999999
Q ss_pred eCCCCcCccccchhhhcCCcCC-eEeccCCcCeec
Q 042366 248 DLSFNKLDGRIPEQLLSVTALA-LLNLSHSRLWGR 281 (343)
Q Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~-~L~l~~N~l~~~ 281 (343)
++.+| ++.+...+|.++.+|+ .+++.+ .++..
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I 288 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI 288 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEE
Confidence 99998 8877888999999999 999988 66443
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.1e-15 Score=122.23 Aligned_cols=131 Identities=21% Similarity=0.196 Sum_probs=65.6
Q ss_pred CCCCcEEEccCCccc-ccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccc----cE
Q 042366 20 PPSTEVFLVSNNKLS-GRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFAN----AI 94 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----~~ 94 (343)
+++|++|++++|+++ +.+|..|.++++|++|+|++|.++ .+ ..+..+. +|++|++++|.+++..+..+.. +.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 466666666666666 455555666666666666666666 33 3344443 6666666666666433322211 22
Q ss_pred EEeccCCCCCCc-CccccCCCCcCEEEecCCcccccCCC-CCCccCCCCCcEEEeeCCccc
Q 042366 95 VNVENNMTSDSF-PCWLGSLPVLKILVLRSNRFDGPLCN-SNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 95 l~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~l~~n~l~ 153 (343)
+++++|.+.+.. +..+..+++|++|++++|++.+..+. ...+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 222222222221 13444555555555555555532210 001134555555555555554
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=3.8e-15 Score=120.19 Aligned_cols=131 Identities=23% Similarity=0.171 Sum_probs=105.2
Q ss_pred ccEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCc
Q 042366 2 ITTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 81 (343)
Q Consensus 2 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~ 81 (343)
.+.+++++++++.......++|++|++++|++++..+..|.++++|++|+|++|.++ .++...+...++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCC
Confidence 367889999988655555789999999999999877788899999999999999998 6666554444589999999999
Q ss_pred ccccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCccccc
Q 042366 82 LEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGF 155 (343)
Q Consensus 82 l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 155 (343)
+++.. +..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+.
T Consensus 88 l~~~~--------------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLP--------------------NGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCC--------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred ccccC--------------------HHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeecc
Confidence 88433 3445678999999999999986544434 6688999999999988754
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=5.1e-15 Score=121.18 Aligned_cols=128 Identities=21% Similarity=0.223 Sum_probs=87.6
Q ss_pred cEEEccCCcccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcc
Q 042366 3 TTLDLRNNRIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 82 (343)
Q Consensus 3 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l 82 (343)
+.++++++.++.......+++++|++++|+|+ .+|..|.++++|++|+|++|.|+ .++...+..+++|++|++++|.|
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCcc
Confidence 45777777776433334667777777777777 45567777777777777777777 44433333334777777777777
Q ss_pred cccccccccccEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccc
Q 042366 83 EGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTG 154 (343)
Q Consensus 83 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 154 (343)
++. .+..|..+++|++|++++|.+....+..+ ..+++|++|++++|.+..
T Consensus 91 ~~i--------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCI--------------------PPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBC--------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEEC
T ss_pred CEe--------------------CHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeec
Confidence 643 34456678888888888888876544444 567888888888887763
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=3.2e-14 Score=129.57 Aligned_cols=218 Identities=8% Similarity=0.049 Sum_probs=114.2
Q ss_pred CCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEeccCC
Q 042366 22 STEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVENNM 101 (343)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~ 101 (343)
+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|..+.+|+.+++..|.++.....
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~------------- 198 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPAS------------- 198 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTT-------------
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechh-------------
Confidence 4555555443 444444455543 355555554 343 33333343333555555555555443333
Q ss_pred CCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCC
Q 042366 102 TSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGG 181 (343)
Q Consensus 102 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 181 (343)
+|. ..+|+.+.+..+ +.......| ..+.+|+.+++..+ ++ .++...|.. ++|+.+.+..+...++.
T Consensus 199 -------aF~-~~~L~~l~lp~~-l~~I~~~aF--~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~ 264 (401)
T 4fdw_A 199 -------TFV-YAGIEEVLLPVT-LKEIGSQAF--LKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPNGVTNIAS 264 (401)
T ss_dssp -------TTT-TCCCSEEECCTT-CCEECTTTT--TTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEETTCCEECT
T ss_pred -------hEe-ecccCEEEeCCc-hheehhhHh--hCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCCCccEECh
Confidence 333 345555555533 332222232 44555555555543 32 344444444 45555555444443333
Q ss_pred cccCcchhHHHHhccCeeeccCCccc-----ccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCcc
Q 042366 182 AFYDESITQKILVMFRAMDFSSNRFH-----GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 256 (343)
Q Consensus 182 ~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (343)
..+.. +++|+.+.+.++.+. .+.+..|..|++|+.+.+. +.+..+....|.++++|+.+.|..+ ++.
T Consensus 265 ~aF~~------c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 265 RAFYY------CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp TTTTT------CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred hHhhC------CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 33222 456666666655443 3455666777777777777 3465556666777777777777544 554
Q ss_pred ccchhhhcCCcCCeEeccCCcCe
Q 042366 257 RIPEQLLSVTALALLNLSHSRLW 279 (343)
Q Consensus 257 ~~~~~~~~l~~L~~L~l~~N~l~ 279 (343)
+...+|.++ +|+.+++.+|.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCC
T ss_pred EcHHhCCCC-CCCEEEEcCCCCc
Confidence 556667666 7777777777663
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.4e-15 Score=119.19 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=101.0
Q ss_pred CCCcCEEEecCCccc-ccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHH
Q 042366 113 LPVLKILVLRSNRFD-GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQK 191 (343)
Q Consensus 113 l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 191 (343)
.++|+.|++++|.+. +..+..+ ..+++|++|++++|.+++. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~---------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLT--DEFEELEFLSTINVGLTSI---ANLPK---------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCC--TTCTTCCEEECTTSCCCCC---TTCCC----------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHH--hhcCCCcEEECcCCCCCCc---hhhhc----------------------------
Confidence 467889999999887 4555544 6688899999998888743 11221
Q ss_pred HHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccC-CCccccccCCCCeEeCCCCcCccccc---hhhhcCCc
Q 042366 192 ILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDGRIP---EQLLSVTA 267 (343)
Q Consensus 192 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~ 267 (343)
+++|++|++++|.+++..|..+..+++|++|++++|.+.+. .+..++.+++|++|++++|.+++..+ ..+..+++
T Consensus 63 -l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 63 -LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp -CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred -CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 56788899999999876888888889999999999999864 33678889999999999999987655 57888999
Q ss_pred CCeEeccC
Q 042366 268 LALLNLSH 275 (343)
Q Consensus 268 L~~L~l~~ 275 (343)
|+.|++++
T Consensus 142 L~~L~l~d 149 (149)
T 2je0_A 142 LTYLDGYD 149 (149)
T ss_dssp CCEETTBC
T ss_pred cccccCCC
Confidence 99998863
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.3e-15 Score=117.92 Aligned_cols=128 Identities=21% Similarity=0.329 Sum_probs=79.1
Q ss_pred CCCCcEEEccCCccc-ccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEec
Q 042366 20 PPSTEVFLVSNNKLS-GRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVE 98 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~ 98 (343)
.++++.|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+ ++|++|++++|.+++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l-~~L~~L~Ls~n~i~~~------------- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKL-NKLKKLELSDNRVSGG------------- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTCCCC-TTCCEEECCSSCCCSC-------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhhhcC-CCCCEEECCCCcccch-------------
Confidence 566777777777777 566667777777777777777776 33 344444 3677777777777642
Q ss_pred cCCCCCCcCccccCCCCcCEEEecCCcccccC-CCCCCccCCCCCcEEEeeCCcccccCCc---ccccCcccccccccc
Q 042366 99 NNMTSDSFPCWLGSLPVLKILVLRSNRFDGPL-CNSNITFPFQALRIIDLSHNEFTGFLPR---RIFPSMEAMKNVDEQ 173 (343)
Q Consensus 99 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~l~~~ 173 (343)
.|..+..+++|++|++++|.+.+.. +..+ ..+++|++|++++|.+++ .+. ..+..+++|+.++++
T Consensus 80 -------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~--~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 -------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPL--KKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -------THHHHHHCTTCCEEECTTSCCCSHHHHGGG--GGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred -------HHHHhhhCCCCCEEECCCCcCCChHHHHHH--hhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence 2333444666777777777665421 1222 556667777777776663 333 345556666666543
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=4.1e-15 Score=119.19 Aligned_cols=141 Identities=19% Similarity=0.176 Sum_probs=105.3
Q ss_pred CCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCC
Q 042366 141 ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSL 220 (343)
Q Consensus 141 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 220 (343)
..+.+++++|.++ .+|..+ .+.|++|++++|.+++..|..|..+++|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--------------------------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L 56 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--------------------------------PTTTQVLYLYDNQITKLEPGVFDRLTQL 56 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--------------------------------CTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEEeCCCCcC-ccCccC--------------------------------CCCCcEEEcCCCcCCccChhhhcCcccC
Confidence 3567888888887 466543 4567899999999998888899999999
Q ss_pred CEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcCeecCCCCCccCCC-CcccccCC
Q 042366 221 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRLWGRIPQGNQFNTF-ANDSYFGN 299 (343)
Q Consensus 221 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~-~~~~~~~~ 299 (343)
++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|++++|.+++..++...+..+ ........
T Consensus 57 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~ 136 (170)
T 3g39_A 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVF 136 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEE
T ss_pred CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceee
Confidence 99999999999888888899999999999999999877778999999999999999997665533222221 11111111
Q ss_pred CCCCCCCCCCCCCCC
Q 042366 300 IHLCGEPLTMRCSND 314 (343)
Q Consensus 300 ~~l~~np~~~~C~~~ 314 (343)
.+....|-.-.|..+
T Consensus 137 ~~~~~~~~~~~C~~~ 151 (170)
T 3g39_A 137 GYLNLDPDSARCSGT 151 (170)
T ss_dssp CSSSBCGGGSBBCC-
T ss_pred ccccCCcccceeCCC
Confidence 123345666667654
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=9.9e-15 Score=116.97 Aligned_cols=110 Identities=26% Similarity=0.310 Sum_probs=94.2
Q ss_pred ccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEecc
Q 042366 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 274 (343)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 274 (343)
..+.+++++|.++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 5666553 899999999999998889999999999999999999998878788999999999999
Q ss_pred CCcCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCC
Q 042366 275 HSRLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCS 312 (343)
Q Consensus 275 ~N~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~ 312 (343)
+|+|++..+. .+..+..+..+++.+|||.|+|.
T Consensus 87 ~N~l~~~~~~-----~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRG-----AFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTT-----TTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHH-----HhcCCCCCCEEEeCCCCCCCCch
Confidence 9999765443 34445556677999999999996
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=9.7e-14 Score=126.38 Aligned_cols=219 Identities=10% Similarity=0.063 Sum_probs=164.4
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccccEEEecc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAIVNVEN 99 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~ 99 (343)
+..++.+.+.+ .++.+...+|.++ +|+.+.|..+ ++ .++...|... +|+.+.+.. .++.
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~--------------- 170 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQ--------------- 170 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCE---------------
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccE---------------
Confidence 45556665543 3444556666664 5777777665 55 5555555554 677777664 3332
Q ss_pred CCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCccccc
Q 042366 100 NMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 179 (343)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~ 179 (343)
+...+|..+++|+.+++..|.+.......+ . ..+|+.+.+..+ ++ .++...|..+.+|+.+.+..+...+
T Consensus 171 -----I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF--~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I 240 (401)
T 4fdw_A 171 -----LKEDIFYYCYNLKKADLSKTKITKLPASTF--V-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTI 240 (401)
T ss_dssp -----ECSSTTTTCTTCCEEECTTSCCSEECTTTT--T-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEE
T ss_pred -----ehHHHhhCcccCCeeecCCCcceEechhhE--e-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCc
Confidence 445667889999999999998887655555 3 579999999855 65 7788889999999999998877666
Q ss_pred CCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCc-----cCCCccccccCCCCeEeCCCCcC
Q 042366 180 GGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLT-----GNIPVSFENMTALESLDLSFNKL 254 (343)
Q Consensus 180 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l 254 (343)
+...+.. ..|+.+.+ .+.++.+...+|.+|++|+.+++.+|.+. .+.+..|.++++|+.+.+. +.+
T Consensus 241 ~~~aF~~-------~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 241 GQEAFRE-------SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp CTTTTTT-------CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred ccccccc-------CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 6554442 47899999 45576677889999999999999998775 4677889999999999999 458
Q ss_pred ccccchhhhcCCcCCeEeccCCcCe
Q 042366 255 DGRIPEQLLSVTALALLNLSHSRLW 279 (343)
Q Consensus 255 ~~~~~~~~~~l~~L~~L~l~~N~l~ 279 (343)
+.+...+|.++.+|+.+.+..| ++
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CC
T ss_pred EEEhhhhhcCCCCccEEEECcc-cc
Confidence 8777889999999999999665 53
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=3.3e-14 Score=114.31 Aligned_cols=86 Identities=21% Similarity=0.216 Sum_probs=43.5
Q ss_pred hccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEec
Q 042366 194 VMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 273 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 273 (343)
+.|++|++++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34555555555555444445555555555555555555444444445555555555555555433333445555555555
Q ss_pred cCCcCe
Q 042366 274 SHSRLW 279 (343)
Q Consensus 274 ~~N~l~ 279 (343)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 555553
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2.7e-14 Score=115.09 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=105.2
Q ss_pred ccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchh
Q 042366 110 LGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESIT 189 (343)
Q Consensus 110 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 189 (343)
+..+.+|+.|++++|.+... +. + ....++|++|++++|.+++. + . +..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~-~~~~~~L~~L~Ls~N~l~~~-~-~-l~~-------------------------- 62 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-L-GATLDQFDAIDFSDNEIRKL-D-G-FPL-------------------------- 62 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-G-GGGTTCCSEEECCSSCCCEE-C-C-CCC--------------------------
T ss_pred cCCcCCceEEEeeCCCCchh-HH-h-hhcCCCCCEEECCCCCCCcc-c-c-ccc--------------------------
Confidence 45678999999999998853 22 2 13344899999999998743 1 1 221
Q ss_pred HHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCc--cccccCCCCeEeCCCCcCccccch----hhh
Q 042366 190 QKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV--SFENMTALESLDLSFNKLDGRIPE----QLL 263 (343)
Q Consensus 190 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~~~ 263 (343)
+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|. .+..+++|+.|++++|.++. .+. .+.
T Consensus 63 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~ 137 (176)
T 1a9n_A 63 ---LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIY 137 (176)
T ss_dssp ---CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHH
T ss_pred ---CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHH
Confidence 567899999999999665566688999999999999997 4454 78889999999999999985 455 488
Q ss_pred cCCcCCeEeccCCcCee
Q 042366 264 SVTALALLNLSHSRLWG 280 (343)
Q Consensus 264 ~l~~L~~L~l~~N~l~~ 280 (343)
.+++|+.|++++|.+..
T Consensus 138 ~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 138 KVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCSEETTEECCHHH
T ss_pred HCCccceeCCCcCCHHH
Confidence 99999999999998754
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=5e-14 Score=113.25 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=88.3
Q ss_pred CeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCC
Q 042366 197 RAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
+.+++++|.++ .+|..+. ++|++|+|++|.|.+..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888999887 5666554 78999999999999888889999999999999999999776667788999999999999
Q ss_pred cCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCC
Q 042366 277 RLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCS 312 (343)
Q Consensus 277 ~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~ 312 (343)
+|++..+. .+..+..+..+++.+|||.|+|.
T Consensus 92 ~l~~l~~~-----~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRG-----AFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTT-----TTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHH-----HhccccCCCEEEeCCCCcccccc
Confidence 99654432 24444555667899999999996
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.3e-14 Score=116.91 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=28.4
Q ss_pred CCCCcEEEccCCcccccCCccccCCC-ccCeeecccccccccCCchhhcCccCccEEEcccCccc
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLS-FLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE 83 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~ 83 (343)
+.+|+.|++++|+++.. +. +..+. +|++|+|++|.++ .+ ..+..+. +|++|++++|.++
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~-~~-~~l~~l~-~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIR-KL-DGFPLLR-RLKTLLVNNNRIC 77 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCC-EE-CCCCCCS-SCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCC-cc-cccccCC-CCCEEECCCCccc
Confidence 45555555555555532 22 33332 5555555555555 22 2333332 5555555555555
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.45 E-value=7.6e-14 Score=124.91 Aligned_cols=85 Identities=21% Similarity=0.218 Sum_probs=40.9
Q ss_pred hccCeeeccC-CcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEe
Q 042366 194 VMFRAMDFSS-NRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 272 (343)
Q Consensus 194 ~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (343)
.+|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3445555543 555444444455555555555555555544444455555555555555555543333333333 55555
Q ss_pred ccCCcCe
Q 042366 273 LSHSRLW 279 (343)
Q Consensus 273 l~~N~l~ 279 (343)
|++|.+.
T Consensus 110 l~~N~~~ 116 (347)
T 2ifg_A 110 LSGNPLH 116 (347)
T ss_dssp CCSSCCC
T ss_pred eeCCCcc
Confidence 5555543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.8e-15 Score=124.42 Aligned_cols=83 Identities=20% Similarity=0.173 Sum_probs=44.5
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCC-ccccccCCCCeEeCCCCcCccccch----------h
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGRIPE----------Q 261 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~ 261 (343)
+++|++|++++|.+++ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|. .
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 3455555555555553 23 34455555666666555553221 2455556666666666665543332 3
Q ss_pred hhcCCcCCeEeccCCcCe
Q 042366 262 LLSVTALALLNLSHSRLW 279 (343)
Q Consensus 262 ~~~l~~L~~L~l~~N~l~ 279 (343)
+..+++|+.|| +|.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 56677777765 55553
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.9e-15 Score=124.39 Aligned_cols=88 Identities=20% Similarity=0.273 Sum_probs=46.0
Q ss_pred HhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccc-hhhhcCCcCCeE
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP-EQLLSVTALALL 271 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 271 (343)
+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+++..+ ..+..+++|+.|
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 344555555555554 344444445556666666665553 22 34555556666666665553221 345555556666
Q ss_pred eccCCcCeecCC
Q 042366 272 NLSHSRLWGRIP 283 (343)
Q Consensus 272 ~l~~N~l~~~~p 283 (343)
++++|.+++..|
T Consensus 146 ~l~~N~l~~~~~ 157 (198)
T 1ds9_A 146 LLAGNPLYNDYK 157 (198)
T ss_dssp EECSCHHHHHHH
T ss_pred EecCCccccccc
Confidence 666665554433
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=4.1e-15 Score=134.17 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=89.8
Q ss_pred CccCeeecccccccccCCchhhcC----ccCccEEEcccCcccccccccccccEEEeccCCCCCCcCccccCCCCcCEEE
Q 042366 45 SFLQYLSLSDNNLSGTIPPCLGNF----STELITLHLKNNSLEGHIHDTFANAIVNVENNMTSDSFPCWLGSLPVLKILV 120 (343)
Q Consensus 45 ~~L~~L~L~~n~i~~~~p~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~ 120 (343)
++|++|+|++|.+++.....+... .++|++|++++|.++......+. ..+++|+.|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~-------------------~~L~~L~~L~ 132 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL-------------------PVFLRARKLG 132 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH-------------------HHHHTEEEEE
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH-------------------HHHHhccHhh
Confidence 456667777776653222222221 13577777777766532222111 1233566666
Q ss_pred ecCCcccccCCCCCC---ccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccccCCcccCcchhHHHHhccC
Q 042366 121 LRSNRFDGPLCNSNI---TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFR 197 (343)
Q Consensus 121 l~~n~l~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 197 (343)
+++|.+.+.....+. ....++|++|++++|.++......+...+ ...+.|+
T Consensus 133 Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L--------------------------~~~~~L~ 186 (372)
T 3un9_A 133 LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL--------------------------AGNTSVT 186 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH--------------------------HTCSSCC
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH--------------------------hcCCCcC
Confidence 666665432111110 01245677777777766522111100000 0134567
Q ss_pred eeeccCCccccc----CcccccCCCCCCEEEccCCcCccCC----CccccccCCCCeEeCCCCcCccccchhhhc
Q 042366 198 AMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGRIPEQLLS 264 (343)
Q Consensus 198 ~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (343)
+|+|++|.+++. ++..+...++|++|+|++|.|++.. ...+...++|++|+|++|.|++.....+..
T Consensus 187 ~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp EEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred EEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 777777776532 2445566677777777777776432 233445577778888888777654444433
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=4.3e-14 Score=127.45 Aligned_cols=88 Identities=19% Similarity=0.270 Sum_probs=70.9
Q ss_pred HhccCeeeccCCccccc----CcccccCCCCCCEEEccCCcCccCC----CccccccCCCCeEeCCCCcCccc----cch
Q 042366 193 LVMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGR----IPE 260 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~ 260 (343)
.+.|++|+|++|.++.. ++..+..+++|++|+|++|.|++.. +..+...++|++|+|++|.|++. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 46799999999999743 4455678899999999999997533 45567778999999999999864 334
Q ss_pred hhhcCCcCCeEeccCCcCee
Q 042366 261 QLLSVTALALLNLSHSRLWG 280 (343)
Q Consensus 261 ~~~~l~~L~~L~l~~N~l~~ 280 (343)
.+..+++|+.|+|++|.|++
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 55677999999999999954
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=6.8e-12 Score=112.14 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=61.1
Q ss_pred eeccCC-cccccCcccccCCCCCCEEEccC-CcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCC
Q 042366 199 MDFSSN-RFHGEIPEVLGNFKSLKVLNLSH-NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 199 L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
++++++ +++ .+|. +..+++|++|+|++ |.|.+..+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3455 66666666666664 6666555556666666666666666666655556666666666666666
Q ss_pred cCeecCCCCCccCCCCcccccCCCCCCCCCCCCCCCCCC
Q 042366 277 RLWGRIPQGNQFNTFANDSYFGNIHLCGEPLTMRCSNDG 315 (343)
Q Consensus 277 ~l~~~~p~~~~~~~~~~~~~~~~~~l~~np~~~~C~~~~ 315 (343)
+|++..+.. +..+. +..+.+.+|+|.|+|...|
T Consensus 91 ~l~~~~~~~-----~~~~~-L~~l~l~~N~~~c~c~l~~ 123 (347)
T 2ifg_A 91 ALESLSWKT-----VQGLS-LQELVLSGNPLHCSCALRW 123 (347)
T ss_dssp CCSCCCSTT-----TCSCC-CCEEECCSSCCCCCGGGHH
T ss_pred ccceeCHHH-----cccCC-ceEEEeeCCCccCCCccHH
Confidence 664333221 11111 3444556666666665433
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.26 E-value=8.8e-11 Score=106.84 Aligned_cols=251 Identities=14% Similarity=0.077 Sum_probs=136.9
Q ss_pred cCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccccc--
Q 042366 15 SILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFAN-- 92 (343)
Q Consensus 15 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-- 92 (343)
..|..+.+|+.+.+.. .++.+...+|.++.+|+.++|.++ ++ .++...+....+|+.+.+..+ ++.....+|..
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 4567788999999974 477777888999999999999765 55 566666666567877766544 44344444443
Q ss_pred cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccc
Q 042366 93 AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE 172 (343)
Q Consensus 93 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~ 172 (343)
................+|..+.+|+.+.+..+.. ......+ ..+.+|+.+++..+ ++ .++...|..+..|+.+..
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F--~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-TLHNGLF--SGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEF 215 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTT--TTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCC
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCccc-eeccccc--cCCCCceEEEcCCC-ce-EeCchhhccccccceeec
Confidence 1111112222233345677788888888865532 1222233 56677777777654 33 445555666666665554
Q ss_pred cCcccccCCcccCcc------h----------hHHHHhccCeeeccCCccc--------------------ccCcccccC
Q 042366 173 QGRLEYMGGAFYDES------I----------TQKILVMFRAMDFSSNRFH--------------------GEIPEVLGN 216 (343)
Q Consensus 173 ~~~~~~~~~~~~~~~------~----------~~~~~~~L~~L~Ls~n~l~--------------------~~~~~~l~~ 216 (343)
..........++... + ....+..++.+.+..+... ......|..
T Consensus 216 ~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~ 295 (394)
T 4fs7_A 216 PNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYG 295 (394)
T ss_dssp CTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTT
T ss_pred CCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccc
Confidence 433222211111000 0 0000223333333222110 011123445
Q ss_pred CCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCC
Q 042366 217 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 217 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
+.+|+.+.+..+ ++.+...+|.++.+|+.+++.++ ++.+...+|.++.+|+.+++..+
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 566666666543 44455556666677777776543 55455566666777777766554
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.13 E-value=5e-09 Score=95.20 Aligned_cols=111 Identities=19% Similarity=0.247 Sum_probs=66.6
Q ss_pred ccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccc
Q 042366 159 RIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 238 (343)
Q Consensus 159 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 238 (343)
..|..+..|+.+.+......++...+.. +..|+.+.+. +.++.+....|.+|.+|+.+++..+ ++.+...+|
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~------c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMN------CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTT------CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred ceeeecccccEEecccccceecCccccc------ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence 3455555555555544433333322222 4566666664 3344455566777777777777654 554556677
Q ss_pred cccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCCcC
Q 042366 239 ENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 278 (343)
.++.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++..
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 77777777777644 5545566777777777777776643
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=9.9e-11 Score=104.75 Aligned_cols=83 Identities=13% Similarity=0.261 Sum_probs=52.6
Q ss_pred HhccCeeeccCCcccccCccccc---CCCCCCEEEccCCcCccC----CCccccccCCCCeEeCCCCcCccccchhhhc-
Q 042366 193 LVMFRAMDFSSNRFHGEIPEVLG---NFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQLLS- 264 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~- 264 (343)
+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.|++.....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 56788888887777643332222 467788888888877653 2333355678888888888877544444433
Q ss_pred CCcCCeEeccCCc
Q 042366 265 VTALALLNLSHSR 277 (343)
Q Consensus 265 l~~L~~L~l~~N~ 277 (343)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3457777766
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.04 E-value=4.7e-09 Score=95.34 Aligned_cols=222 Identities=13% Similarity=0.056 Sum_probs=137.4
Q ss_pred ccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCccccccccccccc
Q 042366 14 GSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA 93 (343)
Q Consensus 14 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 93 (343)
...|..+.+|+.+.+.++- ..+...+|.++.+|+.+.+..+ ++ .++...+.....|+.+.+..+... ..
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~-i~------- 223 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY-LG------- 223 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE-EC-------
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE-ee-------
Confidence 3567779999999997664 4477788999999999999887 55 566666665557888877665432 11
Q ss_pred EEEeccCCCCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCcccccccccc
Q 042366 94 IVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQ 173 (343)
Q Consensus 94 ~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~ 173 (343)
..+....+|+.+.+.... .......+ ..+..++.+.+..+.. .+....|..+..++.+...
T Consensus 224 --------------~~~~~~~~l~~i~ip~~~-~~i~~~~f--~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 224 --------------DFALSKTGVKNIIIPDSF-TELGKSVF--YGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp --------------TTTTTTCCCCEEEECTTC-CEECSSTT--TTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEEC
T ss_pred --------------hhhcccCCCceEEECCCc-eecccccc--cccccceeEEcCCCcc--eeeccccccccccceeccC
Confidence 111123455665554331 11111122 4455666666655432 2344445555555544433
Q ss_pred CcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCc
Q 042366 174 GRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 253 (343)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (343)
... .....+.. +.+|+.+.+..+ ++.+...+|..+.+|+.+++..+ ++.+...+|.++.+|+.+.+..+
T Consensus 285 ~~~--i~~~~F~~------~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 285 SVI--VPEKTFYG------CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp SSE--ECTTTTTT------CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred cee--eccccccc------cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence 221 11111111 456777777544 55455667888888888888644 66566778888888888888776
Q ss_pred CccccchhhhcCCcCCeEeccCC
Q 042366 254 LDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 254 l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
++.+...+|.++.+|+.+++..+
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEehHHHhhCCCCCCEEEECCC
Confidence 66566777888888888887654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=4.5e-08 Score=88.32 Aligned_cols=110 Identities=13% Similarity=0.180 Sum_probs=53.4
Q ss_pred CcccccCccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCc
Q 042366 157 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV 236 (343)
Q Consensus 157 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 236 (343)
+...+..+..|+.+.+......++...+.. +..|+.+.+..+ +.......|..+.+|+.+.+.++.++.+...
T Consensus 232 ~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~------~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~ 304 (379)
T 4h09_A 232 GDGAFYGMKALDEIAIPKNVTSIGSFLLQN------CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR 304 (379)
T ss_dssp CTTTTTTCSSCCEEEECTTCCEECTTTTTT------CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred ccccccCCccceEEEcCCCccEeCccccce------eehhcccccccc-ceeccccccccccccccccccccccceehhh
Confidence 333444445555444444333333222221 344555555332 3323344555556666666655555545555
Q ss_pred cccccCCCCeEeCCCCcCccccchhhhcCCcCCeEecc
Q 042366 237 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 274 (343)
Q Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 274 (343)
.|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+.
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 5666666666666543 443444555555666555553
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.98 E-value=1.9e-08 Score=91.31 Aligned_cols=260 Identities=12% Similarity=0.164 Sum_probs=155.9
Q ss_pred ccEEEccCC--cccccCCCCCCCCcEEEccCCc---ccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEE
Q 042366 2 ITTLDLRNN--RIQGSILVPPPSTEVFLVSNNK---LSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLH 76 (343)
Q Consensus 2 L~~L~ls~n--~l~~~~~~~~~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~ 76 (343)
|+.+.+..+ .|....|..+.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++ .++...+....+|+.+.
T Consensus 66 L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCCEEE
T ss_pred CEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhccccccc
Confidence 555666543 2334667778999999987763 66666777888888887777655 33 44444444444666666
Q ss_pred cccCcccccccccccc--------------------------cEEEeccCCCCCCcCccccCCCCcCEEEecCCcccc--
Q 042366 77 LKNNSLEGHIHDTFAN--------------------------AIVNVENNMTSDSFPCWLGSLPVLKILVLRSNRFDG-- 128 (343)
Q Consensus 77 l~~n~l~~~~~~~~~~--------------------------~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-- 128 (343)
+..+ ++.....+|.. +.+.+..+ +......++..+.++............
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~ 221 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAID 221 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSS
T ss_pred ccce-eeeecccceecccccccccccceeeEeccccccccceeEEEECCc-ccccccchhhhccccceeccccccccccc
Confidence 6432 22222222222 12222111 111122233344444444332211100
Q ss_pred --------------------------cCC------CCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcc
Q 042366 129 --------------------------PLC------NSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRL 176 (343)
Q Consensus 129 --------------------------~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~ 176 (343)
..| ....+..+..|+.+.+.++.. .++...|..+..|+.+.+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~~i 299 (394)
T 4gt6_A 222 NVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSSRI 299 (394)
T ss_dssp SCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCTTC
T ss_pred ceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc--eecCcccccccccccccCCCcc
Confidence 001 111235677888888876543 4677788899999999988776
Q ss_pred cccCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCcc
Q 042366 177 EYMGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 256 (343)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (343)
..++...+.. +.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+++.++...
T Consensus 300 ~~I~~~aF~~------c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~- 370 (394)
T 4gt6_A 300 TELPESVFAG------CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ- 370 (394)
T ss_dssp CEECTTTTTT------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-
T ss_pred cccCceeecC------CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-
Confidence 6665554443 678999999754 66567788999999999999754 76677789999999999999988654
Q ss_pred ccchhhhcCCcCCeEeccCCcC
Q 042366 257 RIPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 257 ~~~~~~~~l~~L~~L~l~~N~l 278 (343)
...+..+.+|+.+.+..|.+
T Consensus 371 --~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 371 --WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp --HHTCBCCCCC----------
T ss_pred --hhhhhccCCCCEEEeCCCCE
Confidence 24677788899998877655
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=7.5e-10 Score=99.06 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=113.1
Q ss_pred CCCCcEEEccCCccc---------ccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEcccCcccccccccc
Q 042366 20 PPSTEVFLVSNNKLS---------GRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTF 90 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 90 (343)
+++|+.|.+...... +.+...+..+++|+.|.|++|.-. .++. + .. ++|++|++..|.+.......+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~-~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PR-PNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BC-TTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cC-CCCcEEEEecCCCChHHHHHH
Confidence 678999988765331 124455677889999999887312 3333 2 23 489999998887763222221
Q ss_pred cccEEEeccCCCCCCcCccccCCCCcCEEEecC--CcccccC-----CCCCCccCCCCCcEEEeeCCcccccCCcccccC
Q 042366 91 ANAIVNVENNMTSDSFPCWLGSLPVLKILVLRS--NRFDGPL-----CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPS 163 (343)
Q Consensus 91 ~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 163 (343)
. ...+|+|+.|+|+. +...+.. ...+....+++|++|++.+|.+....+..++..
T Consensus 214 ~------------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a 275 (362)
T 2ra8_A 214 L------------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275 (362)
T ss_dssp H------------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred H------------------HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence 1 12578999998853 2211110 011111347899999999988763322111110
Q ss_pred ccccccccccCcccccCCcccCcchhHHHHhccCeeeccCCccccc----CcccccCCCCCCEEEccCCcCccCCCcccc
Q 042366 164 MEAMKNVDEQGRLEYMGGAFYDESITQKILVMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 239 (343)
Q Consensus 164 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 239 (343)
..++.|++|+|+.|.+++. ++..+..+++|+.|+|+.|.+++.....+.
T Consensus 276 ---------------------------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 276 ---------------------------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp ---------------------------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred ---------------------------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 0167899999999998754 334445679999999999988754433343
Q ss_pred ccCCCCeEeCCCCc
Q 042366 240 NMTALESLDLSFNK 253 (343)
Q Consensus 240 ~l~~L~~L~L~~n~ 253 (343)
..- ...++++.++
T Consensus 329 ~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHC-CSEEECCSBC
T ss_pred HHc-CCEEEecCCc
Confidence 311 3568888876
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.76 E-value=8.7e-07 Score=79.83 Aligned_cols=248 Identities=12% Similarity=0.068 Sum_probs=156.6
Q ss_pred ccEEEccCC--cccccCCCCCCCCcEEEccCCcccccCCccccCCCccCeeecccccccccCCchhhcCccCccEEEccc
Q 042366 2 ITTLDLRNN--RIQGSILVPPPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 79 (343)
Q Consensus 2 L~~L~ls~n--~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~~~~~L~~L~l~~ 79 (343)
|+.+.+... .|....|..+.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++ .+....+... +|+.+.+..
T Consensus 48 i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i~lp~ 122 (379)
T 4h09_A 48 ISEVRVNSGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDFEFPG 122 (379)
T ss_dssp CSEEEECTTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEEECCT
T ss_pred CEEEEeCCCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-CcccccCCC
Confidence 444444432 233456777899999999654 676777788876 5777766544 44 5556666654 677777754
Q ss_pred Ccccccccccccc--------------------------cEEEeccCC--------------------------------
Q 042366 80 NSLEGHIHDTFAN--------------------------AIVNVENNM-------------------------------- 101 (343)
Q Consensus 80 n~l~~~~~~~~~~--------------------------~~l~l~~n~-------------------------------- 101 (343)
+ ++.....+|.. ..+.+..+.
T Consensus 123 ~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
T 4h09_A 123 A-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTI 201 (379)
T ss_dssp T-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEEC
T ss_pred c-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccccccc
Confidence 4 22222222221 111111100
Q ss_pred ---CCCCcCccccCCCCcCEEEecCCcccccCCCCCCccCCCCCcEEEeeCCcccccCCcccccCccccccccccCcccc
Q 042366 102 ---TSDSFPCWLGSLPVLKILVLRSNRFDGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 178 (343)
Q Consensus 102 ---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~ 178 (343)
........+....+|+.+.+..+ +....... +..+..|+.+.+..+ ++ .++...|..+.+|+.+.+......
T Consensus 202 ~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~--f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~i~~ 276 (379)
T 4h09_A 202 PSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGA--FYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAKVKT 276 (379)
T ss_dssp CTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTT--TTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCCCSE
T ss_pred ccceeEEeecccccccccceeeeccc-eeEEcccc--ccCCccceEEEcCCC-cc-EeCccccceeehhcccccccccee
Confidence 00011112223344555544333 11111222 256778888888765 44 567778889999999988776665
Q ss_pred cCCcccCcchhHHHHhccCeeeccCCcccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCCcCcccc
Q 042366 179 MGGAFYDESITQKILVMFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 258 (343)
Q Consensus 179 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (343)
++...+.. +.+|+.+.+..+.++.+...+|.+|.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++.+.
T Consensus 277 i~~~aF~~------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 277 VPYLLCSG------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp ECTTTTTT------CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred cccccccc------ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 55544433 789999999999888777889999999999999865 76677789999999999999765 66566
Q ss_pred chhhhcCCcC
Q 042366 259 PEQLLSVTAL 268 (343)
Q Consensus 259 ~~~~~~l~~L 268 (343)
..+|.++..+
T Consensus 349 ~~aF~~c~~~ 358 (379)
T 4h09_A 349 SGAFEGSSIT 358 (379)
T ss_dssp TTTTTTSSCC
T ss_pred hhHhhCCCCC
Confidence 6778776533
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=2.9e-09 Score=86.14 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=50.9
Q ss_pred hccCeeeccCCccccc----CcccccCCCCCCEEEccCCcCccC----CCccccccCCCCeEeC--CCCcCccc----cc
Q 042366 194 VMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDL--SFNKLDGR----IP 259 (343)
Q Consensus 194 ~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~~ 259 (343)
+.|++|+|++|.+... +...+...+.|++|+|++|.|.+. +...+...++|++|+| ++|.|.+. +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3456666666665432 233444456677777777776642 2344555567777777 66777653 23
Q ss_pred hhhhcCCcCCeEeccCCcC
Q 042366 260 EQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 260 ~~~~~l~~L~~L~l~~N~l 278 (343)
..+...++|+.|++++|.+
T Consensus 145 ~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCcCEEeccCCCC
Confidence 4455567777777777776
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=2e-08 Score=81.15 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=78.8
Q ss_pred CCCCCCCcEEEccCC-cccc----cCCccccCCCccCeeecccccccccC----CchhhcCccCccEEEcccCccccccc
Q 042366 17 LVPPPSTEVFLVSNN-KLSG----RIPPSICSLSFLQYLSLSDNNLSGTI----PPCLGNFSTELITLHLKNNSLEGHIH 87 (343)
Q Consensus 17 ~~~~~~L~~L~L~~n-~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~----p~~~~~~~~~L~~L~l~~n~l~~~~~ 87 (343)
....+.|++|+|++| .+.. .+...+...++|++|+|++|.|.+.. ...+... ++|++|++++|.|+....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCCHHHH
Confidence 445788999999998 8874 24455677788999999999987432 2333333 379999999999886443
Q ss_pred ccccccEEEeccCCCCCCcCccccCCCCcCEEEe--cCCccc----ccCCCCCCccCCCCCcEEEeeCCccc
Q 042366 88 DTFANAIVNVENNMTSDSFPCWLGSLPVLKILVL--RSNRFD----GPLCNSNITFPFQALRIIDLSHNEFT 153 (343)
Q Consensus 88 ~~~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l--~~n~l~----~~~~~~~~~~~~~~L~~L~l~~n~l~ 153 (343)
..+ ...+...++|++|++ ++|.+. ......+ ...++|++|++++|.+.
T Consensus 111 ~~l----------------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L--~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LAL----------------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANML--EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHH----------------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH--HHCSSCCEEECCCSSHH
T ss_pred HHH----------------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH--HhCCCcCEEeccCCCCC
Confidence 333 234455677888888 677663 1111122 33567888888888775
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=4.6e-07 Score=77.04 Aligned_cols=67 Identities=28% Similarity=0.313 Sum_probs=40.3
Q ss_pred cCCCCCCEEEccCCcCcc--CCCccccccCCCCeEeCCCCcCccccchhhhcCC--cCCeEeccCCcCeecCC
Q 042366 215 GNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT--ALALLNLSHSRLWGRIP 283 (343)
Q Consensus 215 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p 283 (343)
..+++|+.|+|++|+|.+ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 346667777777777665 2334455667777777777777653 2233333 67777777777765544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=2.6e-07 Score=78.61 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=62.9
Q ss_pred HHhccCeeeccCCcccc--cCcccccCCCCCCEEEccCCcCccCCCccccccC--CCCeEeCCCCcCccccc-------h
Q 042366 192 ILVMFRAMDFSSNRFHG--EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT--ALESLDLSFNKLDGRIP-------E 260 (343)
Q Consensus 192 ~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-------~ 260 (343)
.++.|+.|+|++|.+++ .++..+..+++|+.|+|++|.|.+. ..+..+. +|++|+|++|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 36799999999999986 3456777899999999999999865 2344444 99999999999986444 3
Q ss_pred hhhcCCcCCeEe
Q 042366 261 QLLSVTALALLN 272 (343)
Q Consensus 261 ~~~~l~~L~~L~ 272 (343)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467889998876
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=2.7e-07 Score=73.02 Aligned_cols=83 Identities=10% Similarity=0.082 Sum_probs=67.5
Q ss_pred ccCeeeccCCcccccCcccccCCCCCCEEEccCCc-CccCCCcccccc----CCCCeEeCCCCc-CccccchhhhcCCcC
Q 042366 195 MFRAMDFSSNRFHGEIPEVLGNFKSLKVLNLSHNS-LTGNIPVSFENM----TALESLDLSFNK-LDGRIPEQLLSVTAL 268 (343)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 268 (343)
.|++|++++|.++...-..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. |++.-...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58899999999887767778899999999999995 776444445543 479999999984 887666677889999
Q ss_pred CeEeccCCc
Q 042366 269 ALLNLSHSR 277 (343)
Q Consensus 269 ~~L~l~~N~ 277 (343)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=1.1e-06 Score=69.61 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=62.1
Q ss_pred CCCCcEEEccCCcccccCCccccCCCccCeeeccccc-ccccCCchhhcC---ccCccEEEcccCc-ccccccccccccE
Q 042366 20 PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNN-LSGTIPPCLGNF---STELITLHLKNNS-LEGHIHDTFANAI 94 (343)
Q Consensus 20 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~~---~~~L~~L~l~~n~-l~~~~~~~~~~~~ 94 (343)
-..|+.||++++.|+...-..+.++++|++|+|++|. |++..-..+..+ .++|++|++++|. |+...-.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~------ 133 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII------ 133 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH------
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH------
Confidence 4568999999999886655667889999999999984 775433344443 2369999999985 7643222
Q ss_pred EEeccCCCCCCcCccccCCCCcCEEEecCCc
Q 042366 95 VNVENNMTSDSFPCWLGSLPVLKILVLRSNR 125 (343)
Q Consensus 95 l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 125 (343)
.+..+++|+.|++++++
T Consensus 134 --------------~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 --------------ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp --------------HGGGCTTCCEEEEESCT
T ss_pred --------------HHhcCCCCCEEECCCCC
Confidence 24457889999998875
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.05 E-value=3.5e-06 Score=63.54 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 042366 301 HLCGEPLTMRCSNDGLP 317 (343)
Q Consensus 301 ~l~~np~~~~C~~~~~~ 317 (343)
.+.+|||.|+|...|+.
T Consensus 61 ~L~~NP~~CdC~l~~l~ 77 (130)
T 3rfe_A 61 HLGANPWRCDCRLVPLR 77 (130)
T ss_dssp ECCSSCCBCSGGGHHHH
T ss_pred EecCCCeeccCccHHHH
Confidence 55567777777765543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.70 E-value=7e-06 Score=66.15 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=61.7
Q ss_pred HhccCeeeccCCccccc----CcccccCCCCCCEEEccCCcCccCC----CccccccCCCCeEeCCCC---cCccc----
Q 042366 193 LVMFRAMDFSSNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFN---KLDGR---- 257 (343)
Q Consensus 193 ~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n---~l~~~---- 257 (343)
...|+.|+|++|.+... +.+.+..-+.|++|+|++|.|.+.. .+.+..-+.|++|+|++| .+...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 45788899999988743 3345556688999999999987532 234555678999999865 34432
Q ss_pred cchhhhcCCcCCeEeccCCcC
Q 042366 258 IPEQLLSVTALALLNLSHSRL 278 (343)
Q Consensus 258 ~~~~~~~l~~L~~L~l~~N~l 278 (343)
+..++...+.|+.|+++.|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 345677788899999988766
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.49 E-value=0.00016 Score=54.24 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=24.7
Q ss_pred EEEccCCccc-ccCCCC-CCCCcEEEccCCcccccCCccccCCCccCeeecccccc
Q 042366 4 TLDLRNNRIQ-GSILVP-PPSTEVFLVSNNKLSGRIPPSICSLSFLQYLSLSDNNL 57 (343)
Q Consensus 4 ~L~ls~n~l~-~~~~~~-~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i 57 (343)
.++.++++++ ..+|.. ..+|+.|+|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3444444444 123322 33455555555555544444444455555555555444
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=6e-05 Score=60.69 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=65.7
Q ss_pred HhccCeeeccCC-cccc----cCcccccCCCCCCEEEccCCcCccCCC----ccccccCCCCeEeCCCCcCccc----cc
Q 042366 193 LVMFRAMDFSSN-RFHG----EIPEVLGNFKSLKVLNLSHNSLTGNIP----VSFENMTALESLDLSFNKLDGR----IP 259 (343)
Q Consensus 193 ~~~L~~L~Ls~n-~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~ 259 (343)
-+.|++|+|++| .+.. .+.+.+..-+.|++|+|++|.|.+... +.+..-+.|++|+|++|.|.+. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 457899999985 7763 345667778999999999999985433 3445668999999999999864 34
Q ss_pred hhhhcCCcCCeEeccCC
Q 042366 260 EQLLSVTALALLNLSHS 276 (343)
Q Consensus 260 ~~~~~l~~L~~L~l~~N 276 (343)
+++.....|+.|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 45667788999999865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.43 E-value=11 Score=26.04 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=31.5
Q ss_pred cccccCcccccCCCCCCEEEccCCcCccCCCccccccCCCCeEeCCCC
Q 042366 205 RFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 252 (343)
Q Consensus 205 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 252 (343)
.++.+-...|.+|.+|+.+.+..+ ++.+....|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444455567777777877777764 44355667777777777777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.01 E-value=8.1 Score=26.77 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=38.5
Q ss_pred CcCccCCCccccccCCCCeEeCCCCcCccccchhhhcCCcCCeEeccCC
Q 042366 228 NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSHS 276 (343)
Q Consensus 228 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 276 (343)
..++.+....|.++.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3566666788999999999999876 44466778999999999998754
Done!