Query 042367
Match_columns 428
No_of_seqs 172 out of 777
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e20_C Eukaryotic peptide chai 100.0 8.1E-89 2.8E-93 696.6 21.0 412 5-419 10-435 (441)
2 1dt9_A ERF1, protein (eukaryot 100.0 7.9E-84 2.7E-88 663.7 27.4 411 5-417 6-426 (437)
3 3agk_A Peptide chain release f 100.0 5.3E-69 1.8E-73 543.3 28.3 352 8-410 9-372 (373)
4 3mca_B Protein DOM34, elongati 100.0 3.7E-65 1.3E-69 515.1 13.1 319 33-410 28-372 (390)
5 3j15_A Protein pelota; ribosom 100.0 2.4E-63 8.1E-68 497.3 7.5 313 33-409 25-357 (357)
6 3obw_A Protein pelota homolog; 100.0 4.8E-62 1.7E-66 487.5 15.9 306 34-409 46-364 (364)
7 2vgn_A DOM34; translation term 100.0 9.9E-62 3.4E-66 490.2 18.3 317 34-410 31-378 (386)
8 3agj_B Protein pelota homolog; 100.0 1.5E-61 5.2E-66 485.0 13.6 316 33-412 27-355 (358)
9 3oby_A Protein pelota homolog; 100.0 3.8E-61 1.3E-65 478.6 13.2 299 34-410 28-344 (352)
10 2qi2_A Pelota, cell division p 100.0 7.2E-59 2.5E-63 462.5 10.7 300 33-410 25-340 (347)
11 3ir9_A Peptide chain release f 100.0 1.9E-39 6.6E-44 290.0 18.5 162 247-409 2-165 (166)
12 1x52_A Pelota homolog, CGI-17; 99.9 1.7E-28 5.7E-33 208.8 8.3 110 263-410 10-119 (124)
13 3j21_Z 50S ribosomal protein L 94.9 0.22 7.5E-06 39.6 10.0 60 289-392 13-73 (99)
14 3v7q_A Probable ribosomal prot 94.4 0.13 4.5E-06 41.1 7.7 74 287-404 15-88 (101)
15 3on1_A BH2414 protein; structu 94.4 0.15 5.2E-06 40.7 8.0 61 288-392 15-75 (101)
16 3iz5_f 60S ribosomal protein L 93.9 0.43 1.5E-05 38.9 9.7 61 288-392 23-84 (112)
17 2lbw_A H/ACA ribonucleoprotein 93.8 0.31 1.1E-05 40.3 8.9 62 288-392 17-78 (121)
18 3v7e_A Ribosome-associated pro 93.6 0.13 4.5E-06 39.5 5.9 60 289-392 9-68 (82)
19 4a18_G RPL30; ribosome, eukary 93.3 0.21 7.3E-06 40.1 7.0 72 289-404 20-93 (104)
20 1xbi_A 50S ribosomal protein L 92.9 0.33 1.1E-05 40.1 7.6 85 278-406 17-102 (120)
21 2xzm_U Ribosomal protein L7AE 92.4 0.5 1.7E-05 39.4 8.1 71 278-392 12-82 (126)
22 1w41_A 50S ribosomal protein L 92.3 0.5 1.7E-05 37.6 7.8 75 290-408 15-91 (101)
23 2aif_A Ribosomal protein L7A; 91.9 0.72 2.5E-05 38.8 8.7 72 289-404 39-112 (135)
24 2ale_A SNU13, NHP2/L7AE family 91.9 0.53 1.8E-05 39.7 7.8 61 289-392 30-90 (134)
25 3cpq_A 50S ribosomal protein L 91.5 0.55 1.9E-05 38.0 7.3 77 289-409 19-97 (110)
26 3u5e_c L32, RP73, YL38, 60S ri 90.9 0.98 3.4E-05 36.2 8.1 61 288-392 19-80 (105)
27 1vq8_F 50S ribosomal protein L 89.5 0.99 3.4E-05 37.1 7.2 61 289-392 27-87 (120)
28 2fc3_A 50S ribosomal protein L 88.8 1.1 3.6E-05 37.1 6.9 74 290-406 27-101 (124)
29 3o85_A Ribosomal protein L7AE; 88.7 0.83 2.8E-05 37.8 6.2 61 289-392 29-89 (122)
30 1rlg_A 50S ribosomal protein L 88.2 1.1 3.7E-05 36.8 6.6 74 290-406 26-100 (119)
31 3vi6_A 60S ribosomal protein L 83.5 3.3 0.00011 34.3 7.2 30 289-318 25-54 (125)
32 2jnb_A NHP2-like protein 1; sp 82.7 0.89 3E-05 38.8 3.5 30 289-318 48-77 (144)
33 3pwf_A Rubrerythrin; non heme 81.7 0.87 3E-05 39.9 3.1 25 323-356 138-162 (170)
34 3jyw_G 60S ribosomal protein L 81.3 3.8 0.00013 33.3 6.6 79 286-407 20-98 (113)
35 3u5c_M 40S ribosomal protein S 80.9 1.5 5E-05 37.3 4.1 70 278-391 28-99 (143)
36 1gz0_A Hypothetical tRNA/RRNA 74.3 6.1 0.00021 36.7 6.8 71 291-407 13-87 (253)
37 2zkr_f 60S ribosomal protein L 72.9 4.5 0.00016 37.8 5.4 63 287-392 131-193 (266)
38 1yuz_A Nigerythrin; rubrythrin 67.2 2.2 7.6E-05 38.4 1.9 25 323-356 171-195 (202)
39 3nk6_A 23S rRNA methyltransfer 67.1 8.3 0.00028 36.3 6.0 69 291-407 35-106 (277)
40 3izc_H 60S ribosomal protein R 63.1 13 0.00044 34.5 6.2 60 290-392 130-189 (256)
41 1lko_A Rubrerythrin all-iron(I 61.2 4 0.00014 36.3 2.4 46 296-356 135-180 (191)
42 1ipa_A RRMH, RNA 2'-O-ribose m 60.2 9.2 0.00031 35.9 4.9 72 291-408 29-104 (274)
43 2kg4_A Growth arrest and DNA-d 53.4 18 0.0006 31.3 5.1 66 290-392 34-101 (165)
44 2lcq_A Putative toxin VAPC6; P 49.1 7.2 0.00025 33.5 2.0 60 291-358 99-159 (165)
45 3iz5_H 60S ribosomal protein L 47.7 33 0.0011 31.6 6.2 59 290-391 126-184 (258)
46 4a17_F RPL7A, 60S ribosomal pr 45.2 78 0.0027 29.2 8.3 60 290-392 123-182 (255)
47 2kdx_A HYPA, hydrogenase/ureas 41.9 13 0.00045 30.1 2.4 26 323-356 73-99 (119)
48 4ayb_P DNA-directed RNA polyme 37.2 18 0.00063 24.4 2.0 30 324-357 4-33 (48)
49 3a43_A HYPD, hydrogenase nicke 37.2 18 0.00062 30.2 2.6 18 310-331 61-78 (139)
50 3nkl_A UDP-D-quinovosamine 4-d 35.3 64 0.0022 25.9 5.7 55 290-387 48-102 (141)
51 3h0g_L DNA-directed RNA polyme 34.6 23 0.00077 25.6 2.3 29 322-357 20-48 (63)
52 1twf_L ABC10-alpha, DNA-direct 30.8 27 0.00093 25.6 2.3 29 322-357 27-55 (70)
53 1gh9_A 8.3 kDa protein (gene M 29.5 12 0.00042 27.6 0.2 32 323-362 4-35 (71)
54 1l8d_A DNA double-strand break 29.2 27 0.00092 27.6 2.3 10 350-359 50-59 (112)
55 2k5c_A Uncharacterized protein 29.2 23 0.00078 26.8 1.6 29 349-384 10-38 (95)
56 6rxn_A Rubredoxin; electron tr 25.6 47 0.0016 22.2 2.5 29 324-356 5-39 (46)
57 2gmg_A Hypothetical protein PF 23.5 1E+02 0.0034 24.5 4.5 44 297-356 50-93 (105)
58 2kn9_A Rubredoxin; metalloprot 22.9 50 0.0017 25.0 2.5 30 323-356 27-69 (81)
59 1dx8_A Rubredoxin; electron tr 20.4 63 0.0021 23.6 2.6 30 323-356 7-49 (70)
No 1
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-89 Score=696.55 Aligned_cols=412 Identities=52% Similarity=0.906 Sum_probs=238.3
Q ss_pred Ccch-hhHHHHHHHHHHHHHhcccCCCceeEEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhcc
Q 042367 5 SETD-SNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKL 83 (428)
Q Consensus 5 ~~~~-~~~~~~~~~~~l~~L~~~~g~~~~lls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~ 83 (428)
+||+ +++|+|++|++|+.|++++|+||+|||+||||+++|+.++.++.+||++|+|||||.+|.+++.+|+.+..+++.
T Consensus 10 ~~~~~~~~~~~~~k~~i~~l~~~~g~gt~lisl~ipp~~~i~~v~~~l~~e~~~asnIksk~~r~~v~~ai~s~~~rlkl 89 (441)
T 3e20_C 10 SETAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKL 89 (441)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhccchhhHHHHHHHHHhh
Confidence 3444 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEecccccCCCceeEEEEeecCCCceeeeeeccCCcccccE----------EEEEEEECCcEEEEEEeCC
Q 042367 84 YKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGS 153 (428)
Q Consensus 84 ~~~l~~~G~v~~a~~~~~~~G~~~~htl~i~p~~~v~~~k~~~w~~~~le~----------~~vVvvd~g~A~i~~v~~~ 153 (428)
+.++|.+|+++||+..+...|+.++||++|+||.||+++||.||++|+++| +++|+||+++|.++++.++
T Consensus 90 ~~~vp~~g~v~~~G~~~~e~~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~~~gvVvvD~~ga~i~~l~g~ 169 (441)
T 3e20_C 90 YNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGS 169 (441)
T ss_dssp CSSCTTSCCEEEEEEECCGGGCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC------------------------
T ss_pred hccCCCCCEEEEeceeeccCCceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccCcEEEEEEecCCeEEEEEecC
Confidence 999999999999998764344559999999999999999999999999998 9999999999999999999
Q ss_pred eEEEEEEEEecCCccCCCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCC
Q 042367 154 SREVVLKFTVDLPKKHGRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMF 233 (428)
Q Consensus 154 ~~~~~~~i~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l 233 (428)
+++++.+++.++|+||++||||+.||+|++++++++||++|++.+.++|.. .++.++++|||||||++|++|.++++|
T Consensus 170 ~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~--~~~~~v~~lVlaGPg~~k~~f~~~~~l 247 (441)
T 3e20_C 170 AREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFIT--DDKPNVAGIVLAGSADFKTELGQSDLF 247 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccCcCEEEEECCHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999853 235789999999999999999987789
Q ss_pred ChhhhcceeEEEECCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEe
Q 042367 234 DPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIV 313 (428)
Q Consensus 234 ~~~l~~~vi~~v~~~~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv 313 (428)
+++|+++++.++++|+++++|++|+++++.++|+++++++|.++|++|++++++++|++|||+++|.+|+++|||+||||
T Consensus 248 ~~~L~~kvv~~vdvs~gg~~Gl~EvL~~~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI 327 (441)
T 3e20_C 248 DQRLQSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLC 327 (441)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEE
T ss_pred CHHHHhheEEEEECCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEE
Confidence 99999998788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCccccceeecCCCCceEEEecccccccC---CCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchh
Q 042367 314 WEDLDINRYELKQSVTNGIVIKHLNKKQEAE---PSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEG 390 (428)
Q Consensus 314 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G 390 (428)
+|++...|++++|++|.. .+.++.|++..+ .+.+.||.||.+|++++++++++||++.|+++||+|+|||+.|++|
T Consensus 328 sD~l~~~r~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG 406 (441)
T 3e20_C 328 FADLDMIRYEFKNSEGNP-VITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEG 406 (441)
T ss_dssp ETTCCCEEC-----------CCEECSCTTTCCC-----------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHH
T ss_pred ecccccceeEEECCCCce-EEEecCccccccccccccccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHH
Confidence 999999999999999863 456788886433 3456899999999999999999999999999999999999999999
Q ss_pred hhhhcccccEEEEecccCCCCCccCCCCC
Q 042367 391 SQFCRGFGGIGGILRYQPDMGSFDEGSGD 419 (428)
Q Consensus 391 ~q~L~~lgGIaAiLRf~i~~~~~~~~~~~ 419 (428)
.||+++|||||||||||++++.+.++|||
T Consensus 407 ~ql~~~fgGIaaiLRy~~~~~~~~~~~~~ 435 (441)
T 3e20_C 407 MQFVKGFGGIGAVMRYQLDLSMLDPESDE 435 (441)
T ss_dssp HHHHHTSTTEEEECSSCCCCCSSCSSCCC
T ss_pred HHHHHcCCcEEEEEeccCChHHhcccccc
Confidence 99889999999999999999888876644
No 2
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=7.9e-84 Score=663.69 Aligned_cols=411 Identities=60% Similarity=0.980 Sum_probs=361.7
Q ss_pred CcchhhHHHHHHHHHHHHHhcccCCCceeEEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhccc
Q 042367 5 SETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLY 84 (428)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~L~~~~g~~~~lls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~~ 84 (428)
+++++++++|++|++|+.|++++|+||+++|+||||||.|+++|.|+.++|++++||+++.+|++|+++|+++..+|+.+
T Consensus 6 ~~~~~~~~~~~~k~~l~~L~~~~g~gt~~isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~ 85 (437)
T 1dt9_A 6 SAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLY 85 (437)
T ss_dssp CTTTHHHHHHHHHHHHHHHHTCCCSSSCEEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCCeEEEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999666
Q ss_pred CCCCCCeEEEEecccccCCCceeEEEEeecCCCceeeeeeccCCcccccE----------EEEEEEECCcEEEEEEeCCe
Q 042367 85 KNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSS 154 (428)
Q Consensus 85 ~~l~~~G~v~~a~~~~~~~G~~~~htl~i~p~~~v~~~k~~~w~~~~le~----------~~vVvvd~g~A~i~~v~~~~ 154 (428)
+++|.+|+++||+.++...|++++||++++||.|++...|.||++||++| |++|+||+++|.||++++++
T Consensus 86 ~~~~~~Glvvf~g~~~~~~g~~~~~tl~~e~~~pi~~~~~~~~~~f~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~~~~ 165 (437)
T 1dt9_A 86 NKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNT 165 (437)
T ss_dssp SSCCTTCEEEEEEEEECGGGCEEEEEEEECCSCCTTCCEEEEESSCCCHHHHHHCCCCCEEEEEECCSSCCCEEEEETTE
T ss_pred CCCCCCeEEEEeCccccCCCceEEEEEEecCCCCCceeEEEecChhhHHHHHHHhcCCCCEEEEEEeCCceEEEEEcCcE
Confidence 89999999999997654446668999999999999655555999999998 99999999999999999999
Q ss_pred EEEEEEEEecCCccCCCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCCC
Q 042367 155 REVVLKFTVDLPKKHGRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFD 234 (428)
Q Consensus 155 ~~~~~~i~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l~ 234 (428)
++++.+++.++|+||++||||+.||+|++++.+++||++|++++.++|.. .+..++++||||||+++|+.|.++++++
T Consensus 166 ~~~~~~i~~~~P~K~~~Gg~s~~Rf~R~ree~~~~f~~~Vae~l~~~~~~--~~~~~~~~lIlaGpg~~k~~f~~~~~l~ 243 (437)
T 1dt9_A 166 REVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFIS--GDKVNVAGLVLAGSADFKTELSQSDMFD 243 (437)
T ss_dssp EEEEECCCCCCSCCCCSSCSCSHHHHHHHHHHTTTTTTHHHHHTTTTTSC--SSSCSSSCCEEEESTTTTHHHHSCSSSC
T ss_pred EEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccCCccEEEEECCHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999753 2345799999999999999999888899
Q ss_pred hhhhcceeEEEECCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEee
Q 042367 235 PCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVW 314 (428)
Q Consensus 235 ~~l~~~vi~~v~~~~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~ 314 (428)
++|+++++.++++++++++|++|++++++++|+++++++|+++|++|+++++++++++|||+++|++|+++|||+||||+
T Consensus 244 ~~L~~~vv~~v~~s~g~~~gl~E~l~~~~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~ 323 (437)
T 1dt9_A 244 QRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVY 323 (437)
T ss_dssp TTTTTTCCCEEECSSCTTHHHHHHHHHHSSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEE
T ss_pred hhhHhcEEEEEecCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEe
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhh
Q 042367 315 EDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFC 394 (428)
Q Consensus 315 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L 394 (428)
|++..+|++++|++|+.....++.|++.+++....||.||.+++++++.+++++|++.|+++||+|+|||++|++|+|||
T Consensus 324 d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~G~q~l 403 (437)
T 1dt9_A 324 ENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFV 403 (437)
T ss_dssp SCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHHHH
T ss_pred cCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHHHHHHHHHHHcCCEEEEECCCChhHHHHH
Confidence 99999999899999987777788887655566788999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEecccCCCCCccCCC
Q 042367 395 RGFGGIGGILRYQPDMGSFDEGS 417 (428)
Q Consensus 395 ~~lgGIaAiLRf~i~~~~~~~~~ 417 (428)
++|||||||||||++.+.+.+++
T Consensus 404 ~~~gGIaAiLRy~i~~~~~~~~~ 426 (437)
T 1dt9_A 404 KGFGGIGGILRYRVDFQGMEYQG 426 (437)
T ss_dssp HTTTTEEEECSSCCCCCCC----
T ss_pred HhCCCEEEEEecccchhhhcccc
Confidence 99999999999999987777633
No 3
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=5.3e-69 Score=543.29 Aligned_cols=352 Identities=29% Similarity=0.466 Sum_probs=311.5
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCceeEEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhcccCCC
Q 042367 8 DSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLYKNV 87 (428)
Q Consensus 8 ~~~~~~~~~~~~l~~L~~~~g~~~~lls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~~~~l 87 (428)
+.++++|++|++|+.|.+++|++|+++|+|||+++.++++.+++.++|++++|||++.+|+.+..+|+.+..+++.+...
T Consensus 9 ~~~~~~~~~k~~l~~L~~~~~~~t~~vSlyip~~~~~~~~~~~l~~e~~~a~nik~~~~r~~v~~al~~~~~~l~~~~~~ 88 (373)
T 3agk_A 9 RLTISKRELARLLKELKKWSAPATVLLSLYIPPGRPLSDVMTLLRQEYSITDNIKLKRTRQAVKRALSAAMDRLQMLTST 88 (373)
T ss_dssp GGBCCHHHHHHHHHHHTTCCCSSSCEEEEEECTTSCHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred hhhhHHHHHHHHHHHHhhCcCCCCeEEEEEECCCCchHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CCCeEEEEecccccCCCceeEEEEeecCCCceeeeeeccCCcccccE----------EEEEEEECCcEEEEEEeCCeEEE
Q 042367 88 PSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSSREV 157 (428)
Q Consensus 88 ~~~G~v~~a~~~~~~~G~~~~htl~i~p~~~v~~~k~~~w~~~~le~----------~~vVvvd~g~A~i~~v~~~~~~~ 157 (428)
+.+|+++||+... |++++||++++||.|+++.+|.||+.||++| |++|++|+++|.||+++++.+++
T Consensus 89 ~~~Gl~vf~~~~~---~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~~~~~~~ 165 (373)
T 3agk_A 89 PPNGLVLFCGEDM---STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKGARLEV 165 (373)
T ss_dssp CTTCEEEEEEC--------CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSCEEEEEEEETTEEEEEEEETTEEEE
T ss_pred CCCEEEEEEecCC---CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCCCCEEEEEEeCCcEEEEEEeCcEEEE
Confidence 9999999999753 3448999999999999999988999999998 99999999999999999999999
Q ss_pred EEEEEecCCccCCCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhccCCCCC-CCCcceEEEecChhhHHHHhhcCCCChh
Q 042367 158 VLKFTVDLPKKHGRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATS-QPNVTGLILAGSAEFKTELSQSGMFDPC 236 (428)
Q Consensus 158 ~~~i~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~~~~~~~~-~~~~~~iVlaGpg~~k~~f~~~~~l~~~ 236 (428)
+..++.++|+||++||||+.||+|++++.+++||++|++++.++|.+ .+ +.++++||||||+++++.|++.++++++
T Consensus 166 ~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~--~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~ 243 (373)
T 3agk_A 166 LKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVP--LAEKGVLKGVIVAGPGLAKQEFVEGNYLDYR 243 (373)
T ss_dssp EEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTCEEEEEEEESTTHHHHHHHSSCSCHH
T ss_pred EEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccCcceEEEECChHHHHHhhhhhhcChH
Confidence 99999999999999999999999999999999999999999999731 01 3579999999999999999977789999
Q ss_pred hhccee-EEEECCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeec
Q 042367 237 LMAKIL-KVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWE 315 (428)
Q Consensus 237 l~~~vi-~~v~~~~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d 315 (428)
++++++ .++++++++++|++|++++++++|+++++++|.++|++|++++++++++++||+++|++|+++|||+||||+|
T Consensus 244 l~~~vi~~~v~~s~~~~~g~~E~l~~~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv~d 323 (373)
T 3agk_A 244 LKKILAPELVDVAYQGLQGLKEAVMKAEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLIHE 323 (373)
T ss_dssp HHTTBCSSCEECCCCHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEEET
T ss_pred hhhCceeEEEccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEEeC
Confidence 999985 5889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhc
Q 042367 316 DLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCR 395 (428)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~ 395 (428)
+ | + ++++|++.|+++||+|++||++|++|+||++
T Consensus 324 ~----r-----d-------------------------------------~~~~L~e~a~~~G~~V~ivs~~~~~g~ql~~ 357 (373)
T 3agk_A 324 S----R-----E-------------------------------------DLEEWVEKAKSSGAQVIVVPESLAEAEWFLK 357 (373)
T ss_dssp T----C-----T-------------------------------------THHHHHHHHTTTTCEEEEECTTSTTHHHHHH
T ss_pred C----h-----h-------------------------------------HHHHHHHHHHHcCCEEEEECCCCccHHHHHH
Confidence 7 1 1 2788999999999999999999999999559
Q ss_pred ccccEEEEecccCCC
Q 042367 396 GFGGIGGILRYQPDM 410 (428)
Q Consensus 396 ~lgGIaAiLRf~i~~ 410 (428)
+|||||||||||++.
T Consensus 358 ~~gGIaAiLRy~~~~ 372 (373)
T 3agk_A 358 TFGGLAGILRFRIST 372 (373)
T ss_dssp HHTTEEEEECC----
T ss_pred hCCcEEEEEeccCCC
Confidence 999999999999873
No 4
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-65 Score=515.11 Aligned_cols=319 Identities=18% Similarity=0.199 Sum_probs=271.3
Q ss_pred eEEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhccc-CCCCCCeEEEEecccccCCCceeEEEE
Q 042367 33 LISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLY-KNVPSNGLVLFTGTGVTEDGEEKKFAH 111 (428)
Q Consensus 33 lls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~~-~~l~~~G~v~~a~~~~~~~G~~~~htl 111 (428)
.+|++|.+||.|.+.|.|+++.-+ +....+.+|+++.++|+|+..+|+++ +.++++|+++.++.++ +.| +|||+
T Consensus 28 ~lynlI~~GD~V~a~T~Rkv~~~~--~~~~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~v-k~G--~~HTl 102 (390)
T 3mca_B 28 HLYNILQVGDQLKASTVRRVVKVG--ATGSTSGSRVVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEV-KMG--SYHTL 102 (390)
T ss_dssp HHHHHCCTTCEEBCCCCCC----------------------EECCCEEECTTSSCEEEC-CBCSCCC----CC--SCCCC
T ss_pred HHHHhcCCCCEEEEEEEEEEEccC--CCCCCceEEEEEEEEEEEEEEEecCCCCEEEEEEEEecCCccc-ccc--ceEEE
Confidence 467889999999999999965321 11123578999999999999999999 8999999999998766 468 99999
Q ss_pred eecCCCceeeeeeccCCcccccE------------EEEEEEECCcEEEEEEeCCeEEEEEEEEecCCccCCCCCcchhhH
Q 042367 112 DLVPFKPINSSLYVCDSSFHTEA------------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSALRF 179 (428)
Q Consensus 112 ~i~p~~~v~~~k~~~w~~~~le~------------~~vVvvd~g~A~i~~v~~~~~~~~~~i~~~vp~K~~~gG~s~~Rf 179 (428)
+|+||+||+++|+ ||++|++++ +++|++|+|.|.||++++++++++.+++.++|+||++||+ +
T Consensus 103 ~ie~~~~i~i~K~-~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~iPkK~~~gg~-~--- 177 (390)
T 3mca_B 103 DLELHRNFTLYKN-EWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSS-A--- 177 (390)
T ss_dssp CCCSSSCCBCC-C-CCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEEEEEECCCCCCBTTBCH-H---
T ss_pred EEecCCcEEEEEc-CCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEEEEEEEeCCCcCCCCch-h---
Confidence 9999999999998 999999988 9999999999999999999999999999999999987764 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCCChh-----------hhcceeEEEECC
Q 042367 180 SRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPC-----------LMAKILKVLDIS 248 (428)
Q Consensus 180 ~r~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l~~~-----------l~~~vi~~v~~~ 248 (428)
+++.+++||++|++++.++| ++.++++||||||||+|++|++| |+.+ ++.++ .++++|
T Consensus 178 ---~~~~~~~F~~~V~e~l~~~~-----d~~~v~~iIlaGPgf~K~~f~~~--L~~~~~~~~~k~l~~~~~k~-~vv~~s 246 (390)
T 3mca_B 178 ---YQKGLDKFYDSVFQSINSEF-----DFDKLKVVILASPGFVARGLYDY--IFSMAVKLDLKQIVKSKNKF-VILHSS 246 (390)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHC-----CTTTCSEEEEEESSSHHHHHHHH--HHHHHHHTTCHHHHHHGGGE-EEEECS
T ss_pred ---HHHHHHHHHHHHHHHHHHHh-----cccCCcEEEEECChHHHHHHHHH--HHHHHhhccchhhhhhcCeE-EEEEcC
Confidence 68999999999999999995 57899999999999999999975 5442 35777 689999
Q ss_pred CCCCccHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeec
Q 042367 249 YGGVSGFNQAIEL--SSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQ 326 (428)
Q Consensus 249 ~~~~~gl~Evl~~--~~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~ 326 (428)
+++++|++|++++ ++++|+++++++|.++|++|++++++++|+||||+++|.+|+++|||+||||+|+++ +|
T Consensus 247 ~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~------r~ 320 (390)
T 3mca_B 247 TGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLF------RS 320 (390)
T ss_dssp CSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTC------CC
T ss_pred CCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccc------cC
Confidence 9999999999999 489999999999999999999999999999999999999999999999999999996 77
Q ss_pred CCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEecc
Q 042367 327 SVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRY 406 (428)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiLRf 406 (428)
++|+ .+++++ +|++.|+++||+|+|||++|++|+| |++||||||||||
T Consensus 321 ~d~~------------------------------~r~~~~-~L~e~~~~~Gg~V~ivs~~~~~G~q-L~~lgGiaAiLRy 368 (390)
T 3mca_B 321 SDIA------------------------------TRKKWV-SLVEGVKEINCPVYIFSSLHESGKQ-LDLLSGIAAILTY 368 (390)
T ss_dssp SCHH------------------------------HHHHHH-HHHHHHHHTTCCEEEECTTSHHHHH-HHHTTSEEEEBSS
T ss_pred CChh------------------------------HHHHHH-HHHHHHHhcCCEEEEECCCCCchhh-hhcCCcEEEEEec
Confidence 7532 255666 6999999999999999999999999 7999999999999
Q ss_pred cCCC
Q 042367 407 QPDM 410 (428)
Q Consensus 407 ~i~~ 410 (428)
|++.
T Consensus 369 ~i~~ 372 (390)
T 3mca_B 369 PVDE 372 (390)
T ss_dssp CCCC
T ss_pred cCCc
Confidence 9985
No 5
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-63 Score=497.28 Aligned_cols=313 Identities=19% Similarity=0.291 Sum_probs=282.0
Q ss_pred eEEEEeCCCCcccccchhhhhhhccccccc-ccccchhhhhhHHHHHHhhccc-CCCCCCeEEEEec-ccccCCCceeEE
Q 042367 33 LISLVVNPRDKIPRVTKMLGEEYQNASKIK-KRMNRQSVQAAITYAQSRLKLY-KNVPSNGLVLFTG-TGVTEDGEEKKF 109 (428)
Q Consensus 33 lls~~i~~gd~v~~~t~r~~~e~~~~~~ik-~~~~r~~v~~~i~v~~~~~~~~-~~l~~~G~v~~a~-~~~~~~G~~~~h 109 (428)
.+|++|.+||.|.+.|.|+++. .++..+ .+.+|+++.++|+|+..+|+++ +++|++|+++.++ .++ +.| +||
T Consensus 25 ~ly~li~~gD~v~a~T~Rkv~~--~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~Lri~G~i~~~~~~~v-~~G--~~h 99 (357)
T 3j15_A 25 HLYHIIDPGDIVYAKTLRKQAQ--RADSLRAEKVEVIPVFLGVQAEKINFHKFANQVRVTGPIVYASREDV-PLG--KYH 99 (357)
T ss_dssp HHHHHCCSSCEEECCCCCCCCC--CCSSSCCCCCCCCCCCCEEECSCEEEETTTTEEEECCBEEECCCSSC-CCS--SBC
T ss_pred HHHHhCCCCCEEEEEEEEEEEc--CCCCcCCCccEEEEEEEEEEEEEEEecCCCCEEEEEEEEEecccccc-ccc--cEE
Confidence 3578899999999999999654 222222 2678999999999999999998 9999999999999 544 578 999
Q ss_pred EEeecCCCceeeeeeccCCcccccE------------EEEEEEECCcEEEEEEeCCeEEEEEEEEecCCccCCCCCcchh
Q 042367 110 AHDLVPFKPINSSLYVCDSSFHTEA------------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSAL 177 (428)
Q Consensus 110 tl~i~p~~~v~~~k~~~w~~~~le~------------~~vVvvd~g~A~i~~v~~~~~~~~~~i~~~vp~K~~~gG~s~~ 177 (428)
|++++||+||+++|| .|++||+++ +++|+||+++|.||++++++++++.+++.++|+||+ ++.
T Consensus 100 T~~ie~~~~i~i~k~-~w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~~---~~~- 174 (357)
T 3j15_A 100 TIAIEQGTVVTIQKP-RWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVEILNSIRHNLGGKRY---NTD- 174 (357)
T ss_dssp CEEECSSCCEEECTT-CCCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETTEEEEEECCCCCSCSSSS---SCC-
T ss_pred EEEecCCCeEEEEEe-cCCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEEecCCCCcc---cch-
Confidence 999999999999999 599999987 999999999999999999999999999999999974 332
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCCCh---hhhcceeEEEECCCCCCcc
Q 042367 178 RFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDP---CLMAKILKVLDISYGGVSG 254 (428)
Q Consensus 178 Rf~r~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l~~---~l~~~vi~~v~~~~~~~~g 254 (428)
+++.+++||++|++.+.++| ++.++++||||||||+|++|++ +|++ +++++++ ++++|+++++|
T Consensus 175 -----~e~~~~~f~~~Vae~~~~~~-----~~~~v~~iilaGPg~~k~~f~~--~l~~~~~~l~~kvv-~v~~s~g~~~g 241 (357)
T 3j15_A 175 -----RESEEMKFFHDVAKTMEEVM-----KRENVEKAIVAGPGFVKEDFYK--FLKEKYPELAKKVV-IEDTSVTGRTG 241 (357)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHH-----HHHTCCCCEECCSTTHHHHHHH--HHHHHSCCSSCEEC-CCCCSCCHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHh-----cccCCCEEEEECChHHHHHHHH--HHHHhhHHhhCeEE-EEeCCCCchhh
Confidence 57889999999999999997 3578999999999999999996 4665 6788885 88999999999
Q ss_pred HHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCce
Q 042367 255 FNQAIELS--SDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGI 332 (428)
Q Consensus 255 l~Evl~~~--~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~ 332 (428)
++|+++++ +++|+++++++|.++|++|++++++++|++|||+++|.+|+++|||+||||+|++. +++
T Consensus 242 l~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~------r~~----- 310 (357)
T 3j15_A 242 IYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELL------KGE----- 310 (357)
T ss_dssp HHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHH------TSS-----
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEecccc------ccc-----
Confidence 99999997 99999999999999999999999999999999999999999999999999999997 311
Q ss_pred EEEecccccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEecccCC
Q 042367 333 VIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPD 409 (428)
Q Consensus 333 ~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiLRf~i~ 409 (428)
.++.+++|++.|+++||+|+|||++|++|+| |++|||||||||||+|
T Consensus 311 -----------------------------~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~q-L~~lgGiaAiLRy~ip 357 (357)
T 3j15_A 311 -----------------------------LREKVEELMDAVRYSRGEVVVVSSEHEGGEK-LKALGGLAALLRFRVK 357 (357)
T ss_dssp -----------------------------CCHHHHHHHHHHHHTTCEEEEECSSSTTHHH-HHHHCSEEEEESSCCC
T ss_pred -----------------------------chHHHHHHHHHHHHcCCEEEEECCCCCcchh-hhcCCcEEEEEeccCC
Confidence 1345888999999999999999999999999 6999999999999987
No 6
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.8e-62 Score=487.47 Aligned_cols=306 Identities=16% Similarity=0.182 Sum_probs=270.5
Q ss_pred EEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhccc-CCCCCCeEEEEecccccCCCceeEEEEe
Q 042367 34 ISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLY-KNVPSNGLVLFTGTGVTEDGEEKKFAHD 112 (428)
Q Consensus 34 ls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~~-~~l~~~G~v~~a~~~~~~~G~~~~htl~ 112 (428)
+|++|.+||.|.+.|.|+++. + ++.+|+++.++|+|+..+|+++ +.+|++|+++.+++...+.| +|||++
T Consensus 46 lynlI~~GD~V~a~T~Rkv~~---~----~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~iv~~~~~~v~~G--~~HT~~ 116 (364)
T 3obw_A 46 LHLILEKDDKVVAKTTRDVGL---G----KESRRIPMTIILKVDYTEFQEFTNRLRIHGIIEDAPERFGIKG--AHHTIN 116 (364)
T ss_dssp HHHHCCTTCEEEEEEEEECC----------CCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEECCGGGCCTT--CEEEEE
T ss_pred HHHhccCCCEEEEEEEEEEEc---C----CceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEeccccccccc--eEEEEE
Confidence 467789999999999998652 1 1458999999999999999998 89999999999985443568 999999
Q ss_pred ecCCCceeeeeeccCCcccccE----------EEEEEEECCcEEEEEEeCCeEEEEEEEEecCCccCCCCCcchhhHhHH
Q 042367 113 LVPFKPINSSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSALRFSRL 182 (428)
Q Consensus 113 i~p~~~v~~~k~~~w~~~~le~----------~~vVvvd~g~A~i~~v~~~~~~~~~~i~~~vp~K~~~gG~s~~Rf~r~ 182 (428)
++||+||+++|| .|++|++++ +++|+||+++|.||++++++++++.+++.++|+||.
T Consensus 117 ie~~~~i~i~K~-~w~~~~le~L~e~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~iPkK~~------------ 183 (364)
T 3obw_A 117 LDIGDEIIIIKQ-QWNKYVLDRLKRQANKRSRIIIALVDFDEYLIAIPFEQGIKILSEKSLRPLNEEE------------ 183 (364)
T ss_dssp ECTTCEEEEECS-CC--------------CCCEEEEEEETTEEEEEEECSSCEECCCEEECGGGCSST------------
T ss_pred EcCCCeEEEEEc-cCCHHHHHHHHHHhCcCCCEEEEEEECCcEEEEEEeCCEEEEEEEEEeeCccchh------------
Confidence 999999999999 699999998 999999999999999999999999999999999963
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCCChhhhcceeEEEECCCCCCccHHHHHHhH
Q 042367 183 RVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIELS 262 (428)
Q Consensus 183 ~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l~~~l~~~vi~~v~~~~~~~~gl~Evl~~~ 262 (428)
+.+++||++|++.+.+++ ++.++++||||||||+|++|++ +|+++++++++.++++|+++++|++|+++++
T Consensus 184 --~~~~~f~~~V~e~~~~~~-----~~~~v~~iIlaGPg~~K~~f~~--~l~~~~~~~~i~~vd~s~g~~~gl~Evl~~~ 254 (364)
T 3obw_A 184 --GIIEQNALEIATELAEYV-----KQYDPDAILLAGPGFFKEEVSK--KVNAILKNKKIYIDSVSSATRAGLHEVLKRD 254 (364)
T ss_dssp --THHHHHHHHHHHHHHHHH-----HHHCCSEEEEECSSSHHHHHHH--HHHTTTCCSEEEEECCSCSSHHHHHHHHTSH
T ss_pred --HHHHHHHHHHHHHHHHHh-----ccccCCEEEEECChHHHHHHHH--HHHHHhhcCeEEEEeCCCCchHhHHHHHhch
Confidence 456899999999999985 4678999999999999999996 5777777777789999999999999999995
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccc
Q 042367 263 --SDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKK 340 (428)
Q Consensus 263 --~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
+++|+++++++|.++|++|++++++++|++|||+++|.+|+++|||+||||+|++. ++.+
T Consensus 255 ~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~------r~~d------------ 316 (364)
T 3obw_A 255 IIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLL------SSDE------------ 316 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGG------SSCH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCc------cccc------------
Confidence 89999999999999999999999999999999999999999999999999999997 3221
Q ss_pred cccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEecccCC
Q 042367 341 QEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPD 409 (428)
Q Consensus 341 ~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiLRf~i~ 409 (428)
. .++.+++|++.|+++||+|+|||++|++|+| |++|||||||||||+|
T Consensus 317 -------------------~-~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~q-L~~lGGIAAiLRy~i~ 364 (364)
T 3obw_A 317 -------------------Q-ERLTIERMLEDIENKRGEVILVPKESPIYFE-LKNLTGILAILRFRIN 364 (364)
T ss_dssp -------------------H-HHHHHHHHHHHHHTTTCEEEEECTTSTTHHH-HHHTTTEEEEESSCCC
T ss_pred -------------------c-hHHHHHHHHHHHHhcCCEEEEECCCCCCchh-hhcCCcEEEEEeccCC
Confidence 1 3567899999999999999999999999999 7999999999999986
No 7
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=9.9e-62 Score=490.24 Aligned_cols=317 Identities=17% Similarity=0.195 Sum_probs=268.9
Q ss_pred EEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhccc-CCCCCCeEEEEeccc-----ccCCCcee
Q 042367 34 ISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLY-KNVPSNGLVLFTGTG-----VTEDGEEK 107 (428)
Q Consensus 34 ls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~~-~~l~~~G~v~~a~~~-----~~~~G~~~ 107 (428)
+|++|.+||.|.+.|.|+++. +.. .++++|+++.++|+|+..+|+++ +.++++|+++..+.+ + +.| +
T Consensus 31 lynli~~gD~v~~~T~Rkv~~-~~~---g~~~~r~~~~L~i~Ve~~~f~~~~~~lri~G~i~~~~~~~~~~~v-k~g--~ 103 (386)
T 2vgn_A 31 VYQIVDKDDELIFKKKFTSKL-DEA---GKKKSTDLVKLKIKVISEDFDMKDEYLKYKGVTVTDESGASNVDI-PVG--K 103 (386)
T ss_dssp HHTTCCTTCEEEEEECC-----------------CCEEEEEEEEEEEEETTTTEEEEEEEECCCTTSSSSTTC-CTT--C
T ss_pred HHHhcCCCCEEEEEEEEEEec-cCC---CCceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEccCCccccccc-cCc--c
Confidence 567889999999999999754 211 12578999999999999999998 889999999998876 4 358 9
Q ss_pred EEEEeecCCCceeeeeeccCCcccccE------------EEEEEEECCcEEEEEEeCCeEEEEEEEEecCCccCCCCCcc
Q 042367 108 KFAHDLVPFKPINSSLYVCDSSFHTEA------------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQS 175 (428)
Q Consensus 108 ~htl~i~p~~~v~~~k~~~w~~~~le~------------~~vVvvd~g~A~i~~v~~~~~~~~~~i~~~vp~K~~~gG~s 175 (428)
|||++++||+||+++|| .|+.|++++ |++|++|++.|+||++++++++++.+++.++|+||+.|++|
T Consensus 104 ~hT~~iep~~~i~i~k~-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~i~~~iP~K~~~g~~s 182 (386)
T 2vgn_A 104 YLSFTLDYVYPFTIIKQ-NFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVL 182 (386)
T ss_dssp EEEEECCSSSCEEEEES-CCCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEEEEECSSCEEEEEEEEC---------CCS
T ss_pred EEEEEEeCCCeEEEEEc-cCChhhHHHHHHHhccccCCCEEEEEEECCcEEEEEEECCEEEEEEEEEecCCCCccCCCcc
Confidence 99999999999999999 599999987 99999999999999999999999999999999998764344
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCCChhh-----------hcceeEE
Q 042367 176 ALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCL-----------MAKILKV 244 (428)
Q Consensus 176 ~~Rf~r~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l~~~l-----------~~~vi~~ 244 (428)
+ +++.+++||++|++++.++| ++.++++|||||||++|+.|++ ++++++ ++++ .+
T Consensus 183 ~------~~~~~~~F~~~V~~~l~~~~-----~~~~v~~lIlaGPg~~k~~f~~--~l~~~~~~~~~~~~~~~~~ki-~v 248 (386)
T 2vgn_A 183 K------FDEKTEKFYKAIYSAMKKDL-----NFDKLKTIILCSPGFYAKILMD--KIFQYAEEEHNKKILDNKGMF-FI 248 (386)
T ss_dssp S------CCHHHHHHHHHHHHHHHHHC-----CTTTCSEEEEEESTTHHHHHHH--HHHHHHHHTTCHHHHTTGGGE-EE
T ss_pred h------HHHHHHHHHHHHHHHHHHHh-----cccCCcEEEEECCHHHHHHHHH--HHHHHhhhhccchhhhccCcE-EE
Confidence 4 46788999999999999996 4678999999999999999995 466554 4666 68
Q ss_pred EECCCCCCccHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccc
Q 042367 245 LDISYGGVSGFNQAIEL--SSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRY 322 (428)
Q Consensus 245 v~~~~~~~~gl~Evl~~--~~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~ 322 (428)
+++|+++.+|++|++++ ++++|+++++++|.++|++|+++++++++++|||+++|++|+++|||+||||+|++.
T Consensus 249 v~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~---- 324 (386)
T 2vgn_A 249 AHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVL---- 324 (386)
T ss_dssp EECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEEEEETTGG----
T ss_pred EECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEEEEechhh----
Confidence 99999999999999999 699999999999999999999999999999999999999999999999999999996
Q ss_pred eeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEE
Q 042367 323 ELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGG 402 (428)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaA 402 (428)
+|++. .++.+ +++|++.|+++||+|+|||++|++|+| |++||||||
T Consensus 325 --r~~d~------------------------------~~r~~-v~~L~e~v~~~Gg~V~ivs~~~e~G~q-L~~lgGIAA 370 (386)
T 2vgn_A 325 --HSDNI------------------------------AQREE-YLKLMDSVESNGGKALVLSTLHSLGEE-LDQLTGIAC 370 (386)
T ss_dssp --GSSCH------------------------------HHHHH-HHHHHHHHHHTTCEEEEECTTSHHHHH-HHHTTTEEE
T ss_pred --cCCCc------------------------------hhhhH-HHHHHHHHHHcCCEEEEECCCCcchhh-HhccCcEEE
Confidence 66531 12445 888999999999999999999999999 699999999
Q ss_pred EecccCCC
Q 042367 403 ILRYQPDM 410 (428)
Q Consensus 403 iLRf~i~~ 410 (428)
|||||++.
T Consensus 371 iLRy~i~~ 378 (386)
T 2vgn_A 371 ILKYPLPD 378 (386)
T ss_dssp EESSCCCC
T ss_pred EEecCCCc
Confidence 99999983
No 8
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=1.5e-61 Score=484.99 Aligned_cols=316 Identities=16% Similarity=0.238 Sum_probs=285.9
Q ss_pred eEEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhccc-CCCCCCeEEEEec-ccccCCCceeEEE
Q 042367 33 LISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLY-KNVPSNGLVLFTG-TGVTEDGEEKKFA 110 (428)
Q Consensus 33 lls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~~-~~l~~~G~v~~a~-~~~~~~G~~~~ht 110 (428)
.+|++|.+||.|.+.|.|+++. + ..+++|++++++|+|+..+|+++ +.++++|.++..+ .++ +.| +|||
T Consensus 27 ~ly~li~~gD~v~~~t~R~v~~---g---~~~~~r~~~~l~i~Ve~~~f~~~~~~Lri~G~i~~~~~~~v-~~g--~~ht 97 (358)
T 3agj_B 27 LLRITLRPGDVVRKRTSRDVPV---G---SGRKERVVMTLRIRLDSIEFQPFTGKLRISGIVVEGPDEFG-VKG--RRHS 97 (358)
T ss_dssp HHHHHCCTTCEEEEEEEEEECC---S---SSCCEEEEEEEEEEEEEEEECTTSCEEEEEEEEEECCGGGC-CTT--SEEE
T ss_pred HHHHhCCCCCEEEEEEEEEEec---C---CCccEEEEEEEEEEEEEEEcCCCCCEEEEEEEEccCCCccc-ccc--cEEE
Confidence 3578899999999999998643 1 12578999999999999999998 8999999999877 454 358 9999
Q ss_pred EeecCCCceeeeeeccCCcccccE---------EEEEEEECCcEEEEEEeCCeEEEEEEEEecCCccCCCCCcchhhHhH
Q 042367 111 HDLVPFKPINSSLYVCDSSFHTEA---------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSALRFSR 181 (428)
Q Consensus 111 l~i~p~~~v~~~k~~~w~~~~le~---------~~vVvvd~g~A~i~~v~~~~~~~~~~i~~~vp~K~~~gG~s~~Rf~r 181 (428)
++++||+||+++||.||++||++| |++|+||+++|+||++++++++++.+++.++|+|| | +|
T Consensus 98 ~~ie~~~~i~i~k~~~w~~~~le~L~~~~~~~~~~~vvvd~~~A~i~~l~~~~~~~~~~i~~~vpkK~--g--~q----- 168 (358)
T 3agj_B 98 TAVSIGTWLVVERDKGWSEQELERLAAGRARGTAVIAAVDYDEFALAVLAGHGMKILEDTSARLPGKD--D--PS----- 168 (358)
T ss_dssp EEEETTCCEEEECTTCCCHHHHHHHHHCCCCCEEEEEEECSSEEEEEEEESSCEEEEEEEECCCCCTT--S--TT-----
T ss_pred EEEeCCCcEEEEEecCCCHhhHHHHHhhCcCCCEEEEEEECCcEEEEEEeCCEEEEEEEEEecCCCCC--c--hH-----
Confidence 999999999999985699999976 99999999999999999999999999999999998 4 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCCChhhhcceeEEEECCCCCCccHHHHHHh
Q 042367 182 LRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIEL 261 (428)
Q Consensus 182 ~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l~~~l~~~vi~~v~~~~~~~~gl~Evl~~ 261 (428)
+++.+++||++|++++.++| ++.++++||||||+++|++|+ ++|+++++++++.++++++++++|++|++++
T Consensus 169 -~e~~~~~f~~~Va~~l~~~~-----~~~~~~~lIlAGpg~~k~~f~--~~L~~~~~~~~i~~v~~s~g~~~gl~E~l~~ 240 (358)
T 3agj_B 169 -REQEVEKYVDRAAKRIVEEA-----ARHRSPIAVIAGPGQLKTSVA--EKVQRAMPSLKVATVDTSMGGVAGVREALRR 240 (358)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH-----HHHTCSEEEEEESSSHHHHHH--HHHHHHSTTSEEEEEECSCCHHHHHHHHTTS
T ss_pred -HHHHHHHHHHHHHHHHHHHh-----cccCCcEEEEECCHHHHHHHH--HHHHHHhhhceEEEEEcCCCCchhHHHHHhC
Confidence 68899999999999999997 346899999999999999999 5688999888778999999999999999999
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEeccc
Q 042367 262 S--SDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNK 339 (428)
Q Consensus 262 ~--~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~ 339 (428)
+ +++|+++++++|.++|++|++++++++|+++||+++|.+|+++|||+||||+|++. +|++.
T Consensus 241 ~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~------r~~d~---------- 304 (358)
T 3agj_B 241 ESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLL------HSPDD---------- 304 (358)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHH------TCSSH----------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccc------cCCCh----------
Confidence 7 99999999999999999999999999999999999999999999999999999997 66521
Q ss_pred ccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEecccCCCCC
Q 042367 340 KQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMGS 412 (428)
Q Consensus 340 ~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiLRf~i~~~~ 412 (428)
+.++.+++|++.|+++||+|++||++|++|+| |++|||||||||||++++.
T Consensus 305 ---------------------~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~q-L~~~gGIaAiLRy~i~~~~ 355 (358)
T 3agj_B 305 ---------------------AVREAVDEALRLVESMGGRVIIIPGDSPAGER-LVSFGGVIALLRYPVPQEA 355 (358)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCEEEEECSSSHHHHH-HGGGTTEEEEESSCCCGGG
T ss_pred ---------------------hhHHHHHHHHHHHHHcCCEEEEECCCCcchhh-hhcCCcEEEEEeccCchhh
Confidence 13456889999999999999999999999999 7999999999999998643
No 9
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.8e-61 Score=478.61 Aligned_cols=299 Identities=17% Similarity=0.244 Sum_probs=252.9
Q ss_pred EEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhccc-CCCCCCeEEEEecccccCCCceeEEEEe
Q 042367 34 ISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLY-KNVPSNGLVLFTGTGVTEDGEEKKFAHD 112 (428)
Q Consensus 34 ls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~~-~~l~~~G~v~~a~~~~~~~G~~~~htl~ 112 (428)
+|++|.+||.|.+.| |+++. .++..++..+|+++.++|+|+..+|+++ +++|++|+++.++.+ | +|||++
T Consensus 28 lynlI~~GD~V~a~T-Rkv~~--~~~~~~~~~er~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~----G--~~hT~~ 98 (352)
T 3oby_A 28 LRFIIEKGDVVFATT-KRASQ--SSDKLRSDKEMVTVRLGIEVEKVEFHRFANRLRVSGKIVAGIEE----S--GYHTLN 98 (352)
T ss_dssp HHHHSCTTCEEEECC-C-----------------CCCCEEEEEEEEEECSSSSCEEEEEEEEEC----------CEEEEE
T ss_pred HHHhccCCCEEEEEE-EEEec--cCCCCCcceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEecCCC----C--eEEEEE
Confidence 567889999999999 98654 2233334448999999999999999998 999999999999853 7 999999
Q ss_pred ecCCCceeeeeeccCCcccccE------------EEEEEEECCcEEEEEEeCCeEEEEEEEEecCCccCCCCCcchhhHh
Q 042367 113 LVPFKPINSSLYVCDSSFHTEA------------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSALRFS 180 (428)
Q Consensus 113 i~p~~~v~~~k~~~w~~~~le~------------~~vVvvd~g~A~i~~v~~~~~~~~~~i~~~vp~K~~~gG~s~~Rf~ 180 (428)
++||+||+++| ||++|++++ +++|+||+++|.||++++++++++.+++.++|+|++ ++ |
T Consensus 99 iep~~~i~i~k--~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~g---~~--r-- 169 (352)
T 3oby_A 99 ITVGKELSIIK--KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEERMGYGKGMG---DS--R-- 169 (352)
T ss_dssp ECTTCCEEEEE--ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEEEEEEC-----------C--C--
T ss_pred EeCCCeEEEEE--cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEeccCCCccc---hh--H--
Confidence 99999999999 899999888 999999999999999999999999999999999862 22 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCCCh---hhhcceeEEEECCCCCCccHHH
Q 042367 181 RLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDP---CLMAKILKVLDISYGGVSGFNQ 257 (428)
Q Consensus 181 r~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l~~---~l~~~vi~~v~~~~~~~~gl~E 257 (428)
++||++|++.+.++ ++++||||||||+|++|+++ |++ +++++++ ++++|+++++|++|
T Consensus 170 -------~~F~~~V~e~~~~~---------~v~~iIlaGPg~~K~~f~~~--l~~~~~~l~~kvv-~v~~s~gg~~gl~E 230 (352)
T 3oby_A 170 -------KEFFGEVAAKLESF---------DFKYLIVAGPGFAKNDFLDF--LKERYPEMAKNAV-VVDVSSVGSRGFIE 230 (352)
T ss_dssp -------CCHHHHHHHHHHHH---------CCSEEEEECSTTHHHHHHHH--HHHHCHHHHTTEE-ECCCCCCHHHHHHH
T ss_pred -------HHHHHHHHHHHHhc---------CCCEEEEECCHHHHHHHHHH--HHHHHHHhhCcEE-EEECCCCchhhHHH
Confidence 68999999999987 58999999999999999964 554 6888985 89999999999999
Q ss_pred HHHhH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEE
Q 042367 258 AIELS--SDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIK 335 (428)
Q Consensus 258 vl~~~--~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~ 335 (428)
+++++ +++|+++++++|.++|++|+++++++ +++|||+++|.+|+++|||+||||+|+++ ++..
T Consensus 231 vl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~------r~~r------- 296 (352)
T 3oby_A 231 ILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEFL------LEER------- 296 (352)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHHH------HHHT-------
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccch------hccc-------
Confidence 99999 99999999999999999999999998 99999999999999999999999999997 3220
Q ss_pred ecccccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEecccCCC
Q 042367 336 HLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDM 410 (428)
Q Consensus 336 ~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiLRf~i~~ 410 (428)
.++.+++|++.|+++||+|+|||++|++|+| |++|||||||||||++.
T Consensus 297 --------------------------~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~q-L~~lGGIaAiLRy~~~~ 344 (352)
T 3oby_A 297 --------------------------EKWDVDGLLREVEESGGKVVIMSTEFEPGKR-LMSLGGIAALLRFNVKG 344 (352)
T ss_dssp --------------------------TTSCHHHHHHHHHHTTCEEEEECTTSHHHHH-HHHTTSEEEEESSCCCC
T ss_pred --------------------------chHHHHHHHHHHHHcCCEEEEEcCCCcchhH-HhcCCCEEEEEecCCcc
Confidence 0123888999999999999999999999999 69999999999999985
No 10
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=7.2e-59 Score=462.54 Aligned_cols=300 Identities=16% Similarity=0.245 Sum_probs=253.1
Q ss_pred eEEEEeCCCCcccccchhhhhhhccccccc-ccccchhhhhhHHHHHHhhccc-CCCCCCeEEEEecccccCCCceeEEE
Q 042367 33 LISLVVNPRDKIPRVTKMLGEEYQNASKIK-KRMNRQSVQAAITYAQSRLKLY-KNVPSNGLVLFTGTGVTEDGEEKKFA 110 (428)
Q Consensus 33 lls~~i~~gd~v~~~t~r~~~e~~~~~~ik-~~~~r~~v~~~i~v~~~~~~~~-~~l~~~G~v~~a~~~~~~~G~~~~ht 110 (428)
.+|++|.+||.|.+.|.|+++.. .++.. .+.+|+++.++|+|+..+|+++ ++++++|+++||++. +.| +|||
T Consensus 25 ~lynli~~GD~v~a~T~Rkv~~~--~~~~g~~~~er~~~~l~i~Ve~v~f~~~~~~Lri~G~vv~~~~~--~~g--~~ht 98 (347)
T 2qi2_A 25 YLRNILSEGDEVSAITFRRVEES--ADVQRSRERERIPITIRLKVEKIEFQDFDNRLRILGTVIEGPED--TKG--KHQS 98 (347)
T ss_dssp HHHHHCCTTCEEEEEEC---------------CCEEEEEEEEEEECCTTCSCEEEEEEECC-----------CC--SEEE
T ss_pred HHHHhCCCCCEEEEEEEEEEecc--cccCCCCccEEEEEEEEEEEEEEEccCCCCEEecceEEEEcCCC--CCc--cEEE
Confidence 35788999999999999996531 12222 2679999999999999999998 899999999999976 347 9999
Q ss_pred EeecCCCceeeeeeccCCcccccE------------EEEEEEECCcEEEEEEeCCeEEEEEEEEecCCccCCCCCcchhh
Q 042367 111 HDLVPFKPINSSLYVCDSSFHTEA------------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSALR 178 (428)
Q Consensus 111 l~i~p~~~v~~~k~~~w~~~~le~------------~~vVvvd~g~A~i~~v~~~~~~~~~~i~~~vp~K~~~gG~s~~R 178 (428)
++++||.||+++| ||+.|++++ |++|+||+++|.||++++++++++.+++.++|+|++ +| +
T Consensus 99 l~ie~~~~i~i~k--~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~i~~~~~Kk~~---~s--~ 171 (347)
T 2qi2_A 99 ITVTVDSEISITK--EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYA---EG--N 171 (347)
T ss_dssp EEECTTCEEEEES--CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEEEEEEEECCHHHHC---------
T ss_pred EEEcCCCeEEEEE--cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEEEEEEEeecCCCccc---cc--h
Confidence 9999999999977 999999987 999999999999999999999999999999888764 34 3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCCChhhhcceeEEEECCCCCCccHHHH
Q 042367 179 FSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQA 258 (428)
Q Consensus 179 f~r~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l~~~l~~~vi~~v~~~~~~~~gl~Ev 258 (428)
|.| ++||++|++++.++ + ++|||||||++|++|.+ ++++++++++ .++++|+++++|++|+
T Consensus 172 f~r------~~F~~~V~~~~~~~---------d-~~lIlaGPg~~k~~f~~--~l~~~~~~~i-~~v~~s~~~~~gl~Ev 232 (347)
T 2qi2_A 172 YSE------ASYFDQIVNALKNY---------S-NSIIILGPGFARDRFAR--YCAQRGVNVI-GSFPANRTDSGAVYEF 232 (347)
T ss_dssp CCH------HHHHHHHHHHHHTC---------C-SCEEEEESSSHHHHHHH--HHHHTSCCCS-CCEECSSSSHHHHHHH
T ss_pred hhH------HHHHHHHHHHHHhc---------C-CeEEEECCHHHHHHHHH--HHHHhhcceE-EEEecCCCccccHHHH
Confidence 654 69999999999965 3 89999999999999984 5777777665 6889999999999999
Q ss_pred HHhH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEe
Q 042367 259 IELS--SDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKH 336 (428)
Q Consensus 259 l~~~--~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~ 336 (428)
++++ +++|+++++++|.++|++|+++++++ ++|||+++|++|+++|||+||||+|++. +
T Consensus 233 l~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~------r----------- 293 (347)
T 2qi2_A 233 ITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMF------R----------- 293 (347)
T ss_dssp HHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHH------T-----------
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEecccc------c-----------
Confidence 9999 99999999999999999999999998 9999999999999999999999999987 2
Q ss_pred cccccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEecccCCC
Q 042367 337 LNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDM 410 (428)
Q Consensus 337 ~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiLRf~i~~ 410 (428)
+++ +++|++.|+++||+|+|||++|++|+| |++|||||||||||++.
T Consensus 294 -------------------------r~~-~~~L~e~~~~~G~~V~ivs~~~e~G~q-L~~lGGIAaiLRy~~~~ 340 (347)
T 2qi2_A 294 -------------------------TED-GRRSLSIAQTVGTRIHIVSVSNDPGQI-VKKFGGFAGILRYRVQL 340 (347)
T ss_dssp -------------------------SHH-HHHHHHHHHHHTCEEEEECTTSHHHHH-HHHTTSEEEEECSCC--
T ss_pred -------------------------chh-HHHHHHHHHHcCCEEEEECCCCcchHH-HHhcCCEEEEEeccchh
Confidence 123 788999999999999999999999999 69999999999999984
No 11
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=100.00 E-value=1.9e-39 Score=290.05 Aligned_cols=162 Identities=23% Similarity=0.376 Sum_probs=148.5
Q ss_pred CCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeec
Q 042367 247 ISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQ 326 (428)
Q Consensus 247 ~~~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~ 326 (428)
-||+|++|++|++++++++|+++++++|+++|++||+++++++|++|||+++|++|+++|||+||||+|++...|+.++|
T Consensus 2 ~sy~ge~Gl~E~i~~~~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c 81 (166)
T 3ir9_A 2 NAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKC 81 (166)
T ss_dssp -CCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEEC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEe--cccccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEe
Q 042367 327 SVTNGIVIKH--LNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGIL 404 (428)
Q Consensus 327 ~~~~~~~~~~--~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiL 404 (428)
++|+...+.+ +.|++ +......||.||.+|++.++++++++|++.|+++|++|+|||++|++|.||+++||||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~c~~~g~~~~~~e~~~~ve~L~e~~~~~G~~v~ivs~~~eeG~ql~~~fGGIaaiL 160 (166)
T 3ir9_A 82 SVCGYENKWTRRWKPGE-PAPAAGNCPKCGSSLEVTDVTDIVDEFSELADKSNAKVVFVSTDFDEGSQLMNAFGGIAAIL 160 (166)
T ss_dssp SSSSCEEEEEECCCC---CCCCCCBCTTTCCBEEEEEEEEHHHHHHHHHHHTTCEEEEECSCSHHHHHHHHTSTTEEEEE
T ss_pred CCCCceeEEEeecChhh-cccccccccccCccchhhhHHHHHHHHHHHHHhcCCEEEEECCCChhHHHHHHcCCCEEEEE
Confidence 9999655443 56665 33345689999999999999999999999999999999999999999999779999999999
Q ss_pred cccCC
Q 042367 405 RYQPD 409 (428)
Q Consensus 405 Rf~i~ 409 (428)
|||+.
T Consensus 161 Ry~i~ 165 (166)
T 3ir9_A 161 RYNTG 165 (166)
T ss_dssp SSCCC
T ss_pred eccCC
Confidence 99986
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.95 E-value=1.7e-28 Score=208.75 Aligned_cols=110 Identities=20% Similarity=0.337 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccc
Q 042367 263 SDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQE 342 (428)
Q Consensus 263 ~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (428)
+++|+++++++|+++|++|++++++++++++||+++|.+|+++|||+||||+|++. +|++.
T Consensus 10 ~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~------r~~d~------------- 70 (124)
T 1x52_A 10 ASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELF------RHQDV------------- 70 (124)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHH------TCSSH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhh------cCCCh-------------
Confidence 46788999999999999999999999999999999999999999999999999996 66521
Q ss_pred cCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEecccCCC
Q 042367 343 AEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDM 410 (428)
Q Consensus 343 ~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiLRf~i~~ 410 (428)
.++.++++ |++.|+++||+|+|||++|++|+| |++|||||||||||++.
T Consensus 71 -----------------~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~q-L~~~gGIaAiLRy~i~~ 119 (124)
T 1x52_A 71 -----------------ATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQ-LSQLTGVAAILRFPVPS 119 (124)
T ss_dssp -----------------HHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHH-HHTTTTEEEEESSCCTT
T ss_pred -----------------HHHHHHHH-HHHHHHHcCCEEEEECCCCccHHH-HhcCCCEEEEEecCCcc
Confidence 23677888 999999999999999999999999 69999999999999984
No 13
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.87 E-value=0.22 Score=39.60 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=48.9
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHH
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEW 368 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~ 368 (428)
.|+.+.|.++|.+|++.|.+.-+++..|.. .+....
T Consensus 13 agk~v~G~~~v~kai~~gka~lViiA~D~~--------------------------------------------~~~~~~ 48 (99)
T 3j21_Z 13 TGKVVLGSNETIRLAKTGGAKLIIVAKNAP--------------------------------------------KEIKDD 48 (99)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEECCCC--------------------------------------------HHHHHH
T ss_pred hCCEeECHHHHHHHHHcCCccEEEEeCCCC--------------------------------------------HHHHHH
Confidence 489999999999999999999999987632 123556
Q ss_pred HHHHHHhcCCEEEEE-CCCCchhhh
Q 042367 369 LVDHYKQFGCSLEIV-TDKSQEGSQ 392 (428)
Q Consensus 369 L~~~a~~~ga~V~iv-s~~~~~G~q 392 (428)
+...+...+..++.+ .+..+.|.-
T Consensus 49 i~~~c~~~~ip~~~~~~s~~eLG~a 73 (99)
T 3j21_Z 49 IYYYAKLSDIPVYEFEGTSVELGTL 73 (99)
T ss_dssp HHHHHHHTTCCEEEECCCSCGGGGT
T ss_pred HHHHHHHcCCCEEEeCCCHHHHHHH
Confidence 777889999998776 788887775
No 14
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=94.43 E-value=0.13 Score=41.11 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=54.6
Q ss_pred CCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHH
Q 042367 287 QDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLL 366 (428)
Q Consensus 287 ~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v 366 (428)
+..|+.+.|.++|.+|++.|.+.-+++..|... +..
T Consensus 15 ~kagk~v~G~~~v~kai~~gka~lViiA~D~~~--------------------------------------------~~~ 50 (101)
T 3v7q_A 15 NRARKVVSGEDLVIKEIRNARAKLVLLTEDASS--------------------------------------------NTA 50 (101)
T ss_dssp HHTTCEEESHHHHHHHHHTTCCSEEEEETTSCH--------------------------------------------HHH
T ss_pred hhhhhcccchhhhHHHHhcCceeEEEEeccccc--------------------------------------------cch
Confidence 345899999999999999999999999877641 124
Q ss_pred HHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEe
Q 042367 367 EWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGIL 404 (428)
Q Consensus 367 ~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiL 404 (428)
..+...+...+..+.++.+..+.|.-+=+..-.+.||+
T Consensus 51 ~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~~~~~ai~ 88 (101)
T 3v7q_A 51 KKVTDKCNYYKVPYKKVESRAVLGRSIGKEARVVVAVT 88 (101)
T ss_dssp HHHHHHHHHTTCCEEEESCHHHHHHHTTSSCCSEEEEC
T ss_pred hhhcccccccCCCeeeechHHHHHhhhCccceEEEEEe
Confidence 44677788899999999888877765322233345553
No 15
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=94.39 E-value=0.15 Score=40.70 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=49.6
Q ss_pred CCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHH
Q 042367 288 DTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLE 367 (428)
Q Consensus 288 ~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~ 367 (428)
..|+.+.|.++|.+|++.|.+.-+++..|... +...
T Consensus 15 kagk~v~G~~~v~kai~~gka~lViiA~D~~~--------------------------------------------~~~~ 50 (101)
T 3on1_A 15 RARQLLTGEEQVVKAVQNGQVTLVILSSDAGI--------------------------------------------HTKK 50 (101)
T ss_dssp HTTCEEESHHHHHHHHHTTCCSEEEEETTSCH--------------------------------------------HHHH
T ss_pred HHCCEeECHHHHHHHHHcCCCcEEEEeCCCCH--------------------------------------------HHHH
Confidence 45899999999999999999999999877541 1244
Q ss_pred HHHHHHHhcCCEEEEECCCCchhhh
Q 042367 368 WLVDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 368 ~L~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
.+...+...+..+.++.+..+-|.-
T Consensus 51 ~i~~~c~~~~ip~~~~~s~~eLG~a 75 (101)
T 3on1_A 51 KLLDKCGSYQIPVKVVGNRQMLGRA 75 (101)
T ss_dssp HHHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCHHHHHHH
Confidence 5677788899999999888777765
No 16
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=93.86 E-value=0.43 Score=38.93 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=50.4
Q ss_pred CCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHH
Q 042367 288 DTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLE 367 (428)
Q Consensus 288 ~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~ 367 (428)
..|+.+.|.++|.+|++.|.+..++|..|.. .+...
T Consensus 23 kagk~~~G~~~t~kai~~gkakLVilA~D~~--------------------------------------------~~~~~ 58 (112)
T 3iz5_f 23 KSGKYTLGYKTVLKTLRSSLGKLIILANNCP--------------------------------------------PLRKS 58 (112)
T ss_dssp TTCEEEESHHHHHHHHHTTCCSEEEECSCCC--------------------------------------------HHHHH
T ss_pred HhCCeeECHHHHHHHHHcCCceEEEEeCCCC--------------------------------------------HHHHH
Confidence 3489999999999999999999999987653 11255
Q ss_pred HHHHHHHhcCCEEEEE-CCCCchhhh
Q 042367 368 WLVDHYKQFGCSLEIV-TDKSQEGSQ 392 (428)
Q Consensus 368 ~L~~~a~~~ga~V~iv-s~~~~~G~q 392 (428)
.+...+...+..+..+ .+..+.|..
T Consensus 59 ~i~~~c~~~~ipv~~~~~s~~eLG~A 84 (112)
T 3iz5_f 59 EIETYAMLAKISVHHFHGNNVDLGTA 84 (112)
T ss_dssp HHHHHHHHTTCCEECCCCTTCTHHHH
T ss_pred HHHHHHHHcCCcEEEeCCCHHHHHHH
Confidence 5777889999999999 788888876
No 17
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=93.77 E-value=0.31 Score=40.30 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=50.4
Q ss_pred CCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHH
Q 042367 288 DTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLE 367 (428)
Q Consensus 288 ~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~ 367 (428)
..++.+.|..+|.+|++.|.+..++|+.|... ..++.
T Consensus 17 k~gkl~~G~~~v~kai~~gkakLViiA~D~~~-------------------------------------------~~~~~ 53 (121)
T 2lbw_A 17 KAKNVKRGVKEVVKALRKGEKGLVVIAGDIWP-------------------------------------------ADVIS 53 (121)
T ss_dssp TTTCEEESHHHHHHHHHHSCCCEEEECTTCSC-------------------------------------------TTHHH
T ss_pred HcCCccccHHHHHHHHHcCCceEEEEeCCCCH-------------------------------------------HHHHH
Confidence 35899999999999999999999999877541 12355
Q ss_pred HHHHHHHhcCCEEEEECCCCchhhh
Q 042367 368 WLVDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 368 ~L~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
.+...+..+|.-+.++++..+.|.-
T Consensus 54 ~l~~lc~~~~VP~~~v~sk~eLG~a 78 (121)
T 2lbw_A 54 HIPVLCEDHSVPYIFIPSKQDLGAA 78 (121)
T ss_dssp HHHHHHHHTCCCEEECCCHHHHHHH
T ss_pred HHHHHHHhcCCcEEEECCHHHHHHH
Confidence 6778889999999999987777764
No 18
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=93.62 E-value=0.13 Score=39.51 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=50.7
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHH
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEW 368 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~ 368 (428)
.|+.+.|.++|.+|++.|.+..++|+.|.. .+....
T Consensus 9 agk~~~G~~~v~kai~~gkaklViiA~D~~--------------------------------------------~~~~~~ 44 (82)
T 3v7e_A 9 AKSIIIGTKQTVKALKRGSVKEVVVAKDAD--------------------------------------------PILTSS 44 (82)
T ss_dssp CSEEEESHHHHHHHHTTTCEEEEEEETTSC--------------------------------------------HHHHHH
T ss_pred cCCeeEcHHHHHHHHHcCCeeEEEEeCCCC--------------------------------------------HHHHHH
Confidence 389999999999999999999999987754 123666
Q ss_pred HHHHHHhcCCEEEEECCCCchhhh
Q 042367 369 LVDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 369 L~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
+...+...+..+.++++..+.|.-
T Consensus 45 i~~lc~~~~Ip~~~v~sk~eLG~a 68 (82)
T 3v7e_A 45 VVSLAEDQGISVSMVESMKKLGKA 68 (82)
T ss_dssp HHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCHHHHHHH
Confidence 888899999999999988777764
No 19
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=93.35 E-value=0.21 Score=40.10 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=52.6
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHH
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEW 368 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~ 368 (428)
.|+.+.|.++|.+|++.|.+..+++..|... +....
T Consensus 20 agklv~G~~~v~kai~~gkaklViiA~D~~~--------------------------------------------~~~~~ 55 (104)
T 4a18_G 20 SGKATLGYKSTIKAIRNGTAKLVFISNNCPT--------------------------------------------VRKSE 55 (104)
T ss_dssp HSEEEESHHHHHHHHHHTCCCEEEECTTSCH--------------------------------------------HHHHH
T ss_pred hCCEeECHHHHHHHHHcCCceEEEEeCCCCH--------------------------------------------HHHHH
Confidence 3899999999999999999999999876541 12444
Q ss_pred HHHHHHhcCCEEE-EECCCCchhhhhhcccc-cEEEEe
Q 042367 369 LVDHYKQFGCSLE-IVTDKSQEGSQFCRGFG-GIGGIL 404 (428)
Q Consensus 369 L~~~a~~~ga~V~-ivs~~~~~G~q~L~~lg-GIaAiL 404 (428)
+...+...+..+. ++.+..+.|..+=+..+ .+.||+
T Consensus 56 i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~ 93 (104)
T 4a18_G 56 IEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAIL 93 (104)
T ss_dssp HHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEE
T ss_pred HHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEEe
Confidence 5667788899988 58888888776322232 245665
No 20
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=92.88 E-value=0.33 Score=40.06 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccc
Q 042367 278 IGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDL 357 (428)
Q Consensus 278 l~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 357 (428)
-+++++.++.- |+.+.|.++|.+|++.|.+.-++++.|.....
T Consensus 17 ~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~~p~~------------------------------------ 59 (120)
T 1xbi_A 17 QKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDVKPEE------------------------------------ 59 (120)
T ss_dssp HHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCCSSGG------------------------------------
T ss_pred HHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCCChHH------------------------------------
Confidence 34555555554 89999999999999999999999988764110
Q ss_pred hhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhccc-ccEEEEecc
Q 042367 358 KVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGF-GGIGGILRY 406 (428)
Q Consensus 358 ~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~l-gGIaAiLRf 406 (428)
++..|...+...|..+.++.+..+.|.-+=+.+ -.++||+-+
T Consensus 60 -------~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~ 102 (120)
T 1xbi_A 60 -------VVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINE 102 (120)
T ss_dssp -------GTTTHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred -------HHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCCCEEEEEEecc
Confidence 122356667788988988888877776522221 234566543
No 21
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=92.39 E-value=0.5 Score=39.38 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccc
Q 042367 278 IGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDL 357 (428)
Q Consensus 278 l~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 357 (428)
|.+++....+ .|+.+.|..+|.+|++.|.+..++|..|.. |
T Consensus 12 l~~~L~~A~~-~gkl~~G~~~v~Kai~~gka~LViiA~D~~--------p------------------------------ 52 (126)
T 2xzm_U 12 LAKVIKSSNC-QDAISKGLHEVLRTIEAKQALFVCVAEDCD--------Q------------------------------ 52 (126)
T ss_dssp HHHHHTTTTS-SSCEEESHHHHHHHHHHTCCSEEEEESSCC--------S------------------------------
T ss_pred HHHHHHHHHH-cCCEeecHHHHHHHHHcCCceEEEEeCCCC--------h------------------------------
Confidence 3444443333 378999999999999999999999987753 0
Q ss_pred hhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhh
Q 042367 358 KVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 358 ~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
...+..+...+..++.-+.+|++..+.|.-
T Consensus 53 -----~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a 82 (126)
T 2xzm_U 53 -----GNYVKLVKALCAKNEIKYVSVPKRASLGEY 82 (126)
T ss_dssp -----TTHHHHHHHHHHHTTCCEEEESCSHHHHHH
T ss_pred -----HHHHHHHHHHHHHhCCCEEEECCHHHHHHH
Confidence 123556788899999999999988777764
No 22
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=92.29 E-value=0.5 Score=37.57 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=55.2
Q ss_pred CceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHH
Q 042367 290 GKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWL 369 (428)
Q Consensus 290 g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L 369 (428)
|+.+.|.++|.+|++.|.+.-++++.|.. .+....|
T Consensus 15 gkl~~G~~~v~kai~~gka~lViiA~D~~--------------------------------------------~~~~~~l 50 (101)
T 1w41_A 15 GKIVMGARKSIQYAKMGGAKLIIVARNAR--------------------------------------------PDIKEDI 50 (101)
T ss_dssp SEEEESHHHHHHHHHHTCCSEEEEETTSC--------------------------------------------HHHHHHH
T ss_pred CCEeECHHHHHHHHHcCCCcEEEEeCCCC--------------------------------------------HHHHHHH
Confidence 89999999999999999999999987632 1235557
Q ss_pred HHHHHhcCCEEEEE-CCCCchhhhhhcccc-cEEEEecccC
Q 042367 370 VDHYKQFGCSLEIV-TDKSQEGSQFCRGFG-GIGGILRYQP 408 (428)
Q Consensus 370 ~~~a~~~ga~V~iv-s~~~~~G~q~L~~lg-GIaAiLRf~i 408 (428)
...+...+..+.++ .+..+.|.-+=+... .++||+-...
T Consensus 51 ~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~d~g~ 91 (101)
T 1w41_A 51 EYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGA 91 (101)
T ss_dssp HHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEEECTT
T ss_pred HHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEecCCH
Confidence 77888899998886 777777765322323 2577775543
No 23
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=91.91 E-value=0.72 Score=38.84 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=54.2
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHH
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEW 368 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~ 368 (428)
.|+.+.|.++|.+|++.|.+.-+++..|... ..++..
T Consensus 39 agklv~G~~~v~kal~~gkaklViiA~D~~~-------------------------------------------~~~~~~ 75 (135)
T 2aif_A 39 YKQLRKGANEATKALNRGIAEIVLLAADAEP-------------------------------------------LEILLH 75 (135)
T ss_dssp TTCEEESHHHHHHHHHTTCEEEEEEETTCSC-------------------------------------------HHHHHH
T ss_pred cCCcccCHHHHHHHHHcCCCeEEEEecCCCh-------------------------------------------HHHHhH
Confidence 4899999999999999999999998877541 112456
Q ss_pred HHHHHHhcCCEEEEECCCCchhhhhhcccccE--EEEe
Q 042367 369 LVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGI--GGIL 404 (428)
Q Consensus 369 L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGI--aAiL 404 (428)
|...+...+.-+.++.+..+.|.-+=+. -++ .||+
T Consensus 76 l~~lc~~~~IP~~~v~sk~eLG~a~G~~-~~v~~vaI~ 112 (135)
T 2aif_A 76 LPLVCEDKNTPYVFVRSKVALGRACGVS-RPVIAAAIT 112 (135)
T ss_dssp HHHHHHHTTCCEEEESCHHHHHHHTTCS-SCCSEEEEE
T ss_pred HHHHHHhcCCcEEEECCHHHHHHHhCCC-CcEEEEEEE
Confidence 7888999999999998887777652222 234 5565
No 24
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=91.86 E-value=0.53 Score=39.66 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=49.2
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHH
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEW 368 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~ 368 (428)
.|+.+.|..+|.+|++.|.+..++|+.|.... +++..
T Consensus 30 ~gkl~~G~~~v~kai~~gkakLViiA~D~~p~-------------------------------------------~~~~~ 66 (134)
T 2ale_A 30 LRQLKKGANEATKTLNRGISEFIIMAADCEPI-------------------------------------------EILLH 66 (134)
T ss_dssp TTCEEESHHHHHHHHHHTCEEEEEEETTCSSG-------------------------------------------GGGTH
T ss_pred cCCcccCchHHHHHHHhCCCeEEEEeCCCCHH-------------------------------------------HHHHH
Confidence 48899999999999999999999998776411 11334
Q ss_pred HHHHHHhcCCEEEEECCCCchhhh
Q 042367 369 LVDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 369 L~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
|...+..+|.-+.++.+..+.|.-
T Consensus 67 l~~lc~~~~VP~~~v~sk~eLG~a 90 (134)
T 2ale_A 67 LPLLCEDKNVPYVFVPSRVALGRA 90 (134)
T ss_dssp HHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCHHHHHHH
Confidence 677888999999999888777765
No 25
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=91.49 E-value=0.55 Score=38.05 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=57.2
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHH
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEW 368 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~ 368 (428)
.|+.+.|.++|.+|++.|.+.-++++.|.. .+.+..
T Consensus 19 agkl~~G~~~v~kai~~gka~lViiA~D~~--------------------------------------------~~~~~~ 54 (110)
T 3cpq_A 19 TGKVILGSKRTIKFVKHGEGKLVVLAGNIP--------------------------------------------KDLEED 54 (110)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTCB--------------------------------------------HHHHHH
T ss_pred cCCeeeCHHHHHHHHHcCCceEEEEeCCCC--------------------------------------------HHHHHH
Confidence 389999999999999999999999887652 123556
Q ss_pred HHHHHHhcCCEEEEE-CCCCchhhhhhcccc-cEEEEecccCC
Q 042367 369 LVDHYKQFGCSLEIV-TDKSQEGSQFCRGFG-GIGGILRYQPD 409 (428)
Q Consensus 369 L~~~a~~~ga~V~iv-s~~~~~G~q~L~~lg-GIaAiLRf~i~ 409 (428)
|...+...+..++++ .+..+.|.-+=+... .++||+-....
T Consensus 55 l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~d~g~a 97 (110)
T 3cpq_A 55 VKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLS 97 (110)
T ss_dssp HHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEEECTTC
T ss_pred HHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEecCCHH
Confidence 777888899998888 777777765323333 26788765543
No 26
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=90.88 E-value=0.98 Score=36.20 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=48.1
Q ss_pred CCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHH
Q 042367 288 DTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLE 367 (428)
Q Consensus 288 ~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~ 367 (428)
..|+.+.|.++|.+|++.|.+.-+++..|.. .+...
T Consensus 19 kagk~v~G~~~v~kai~~gkaklVilA~D~~--------------------------------------------~~~~~ 54 (105)
T 3u5e_c 19 KSGKYTLGYKSTVKSLRQGKSKLIIIAANTP--------------------------------------------VLRKS 54 (105)
T ss_dssp TTSEEEESHHHHHHHHHTTCCSEEEECTTSC--------------------------------------------HHHHH
T ss_pred HhCCeeECHHHHHHHHHcCCceEEEEeCCCC--------------------------------------------HHHHH
Confidence 4489999999999999999999999987653 11244
Q ss_pred HHHHHHHhcCCEEE-EECCCCchhhh
Q 042367 368 WLVDHYKQFGCSLE-IVTDKSQEGSQ 392 (428)
Q Consensus 368 ~L~~~a~~~ga~V~-ivs~~~~~G~q 392 (428)
.+...+...+..+. ++.+..+.|..
T Consensus 55 ~i~~~c~~~~ip~~~~~~s~~eLG~A 80 (105)
T 3u5e_c 55 ELEYYAMLSKTKVYYFQGGNNELGTA 80 (105)
T ss_dssp HHHHHHHHHTCEEEECSSCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCHHHHHHH
Confidence 56677788899998 57777777765
No 27
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=89.46 E-value=0.99 Score=37.08 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=47.0
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHH
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEW 368 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~ 368 (428)
.|+.+.|.++|.+|++.|.+.-++++.|..... ++..
T Consensus 27 ag~l~~G~~~v~kal~~gka~lViiA~D~~~~~-------------------------------------------~~~~ 63 (120)
T 1vq8_F 27 TGAVKKGTNETTKSIERGSAELVFVAEDVQPEE-------------------------------------------IVMH 63 (120)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESCCSSGG-------------------------------------------GTTT
T ss_pred cCCEeECHHHHHHHHHcCCceEEEEeCCCChHH-------------------------------------------HHHH
Confidence 378999999999999999999999988764110 1223
Q ss_pred HHHHHHhcCCEEEEECCCCchhhh
Q 042367 369 LVDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 369 L~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
|...+...|..+.++.+..+.|.-
T Consensus 64 l~~lc~~~~Vp~~~~~sk~eLG~a 87 (120)
T 1vq8_F 64 IPELADEKGVPFIFVEQQDDLGHA 87 (120)
T ss_dssp HHHHHHTTCCCEEEESCHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCHHHHHHH
Confidence 556677888888888887777765
No 28
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=88.77 E-value=1.1 Score=37.14 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=52.5
Q ss_pred CceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHH
Q 042367 290 GKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWL 369 (428)
Q Consensus 290 g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L 369 (428)
|+.+.|.++|.+|++.|.+.-++++.|..... ++..|
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~~~~~-------------------------------------------~~~~l 63 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDVDPPE-------------------------------------------IVMHL 63 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTCSSGG-------------------------------------------GTTTH
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCCChHH-------------------------------------------HHHHH
Confidence 78999999999999999999999988764110 01225
Q ss_pred HHHHHhcCCEEEEECCCCchhhhhhccc-ccEEEEecc
Q 042367 370 VDHYKQFGCSLEIVTDKSQEGSQFCRGF-GGIGGILRY 406 (428)
Q Consensus 370 ~~~a~~~ga~V~ivs~~~~~G~q~L~~l-gGIaAiLRf 406 (428)
...+...+..+.++.+..+.|.-+=+.+ -.++||+-+
T Consensus 64 ~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~vaI~d~ 101 (124)
T 2fc3_A 64 PLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEP 101 (124)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred HHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEECc
Confidence 5667788888888888877776522221 245566644
No 29
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=88.69 E-value=0.83 Score=37.76 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=48.0
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHH
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEW 368 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~ 368 (428)
.|+.+.|.++|.+|++.|.+.-++++.|..... ++..
T Consensus 29 agklv~G~~~v~kai~~gka~lViiA~D~~p~~-------------------------------------------~~~~ 65 (122)
T 3o85_A 29 LQAIKRGANEALKQVNRGKAELVIIAADADPIE-------------------------------------------IVLH 65 (122)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTCSSGG-------------------------------------------GGTT
T ss_pred hCCEeEcHHHHHHHHHcCCceEEEEeCCCChHH-------------------------------------------HHHH
Confidence 489999999999999999999999988764110 1223
Q ss_pred HHHHHHhcCCEEEEECCCCchhhh
Q 042367 369 LVDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 369 L~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
|...+...|..+.++.+..+.|.-
T Consensus 66 l~~lc~~~~VP~~~v~sk~eLG~a 89 (122)
T 3o85_A 66 LPLACEDKGVPYVFIGSKNALGRA 89 (122)
T ss_dssp HHHHHHTTTCCEEEESCHHHHHHH
T ss_pred HHHHHHHhCCCEEEECCHHHHHHH
Confidence 566678899998898888777765
No 30
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=88.18 E-value=1.1 Score=36.78 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=52.3
Q ss_pred CceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHH
Q 042367 290 GKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWL 369 (428)
Q Consensus 290 g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L 369 (428)
|+.+.|.++|.+|++.|.+.-++++.|..... ++..|
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~~~~~-------------------------------------------~~~~l 62 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDVDPPE-------------------------------------------IVAHL 62 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCCSCST-------------------------------------------TTTHH
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCCChHH-------------------------------------------HHHHH
Confidence 78999999999999999999999988764110 12235
Q ss_pred HHHHHhcCCEEEEECCCCchhhhhhcc-cccEEEEecc
Q 042367 370 VDHYKQFGCSLEIVTDKSQEGSQFCRG-FGGIGGILRY 406 (428)
Q Consensus 370 ~~~a~~~ga~V~ivs~~~~~G~q~L~~-lgGIaAiLRf 406 (428)
...+...|..+.++.+..+.|.-+=+. --.++||+-+
T Consensus 63 ~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~ 100 (119)
T 1rlg_A 63 PLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINE 100 (119)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred HHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEecC
Confidence 666778888898888887777652222 1234566543
No 31
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=83.48 E-value=3.3 Score=34.28 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=27.2
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCc
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLD 318 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~ 318 (428)
.|+.+.|.++|.+|++.|.+..+|+..|..
T Consensus 25 aGklv~G~~~v~kaIr~gkakLVIiA~Das 54 (125)
T 3vi6_A 25 SGKYVLGYKQTLKMIRQGKAKLVILANNCP 54 (125)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTSC
T ss_pred hCCeeeCHHHHHHHHHcCCceEEEEeCCCC
Confidence 389999999999999999999999987754
No 32
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=82.70 E-value=0.89 Score=38.76 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=27.5
Q ss_pred CCceEecHHHHHHHHHccCccEEEeeccCc
Q 042367 289 TGKFVVGVDDSVKALEMGAIHTLIVWEDLD 318 (428)
Q Consensus 289 ~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~ 318 (428)
.|+.+.|.++|.+|++.|.+..++|+.|..
T Consensus 48 agkl~~G~kev~KaI~~gkakLVIIA~D~~ 77 (144)
T 2jnb_A 48 YKQLRKGANEATKTLNRGISEFIVMAADAE 77 (144)
T ss_dssp TTCCCBCHHHHHHHHHHTCEEEEEEETTCS
T ss_pred cCCccccHHHHHHHHHhCCCeEEEEeCCCC
Confidence 478999999999999999999999988765
No 33
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=81.66 E-value=0.87 Score=39.92 Aligned_cols=25 Identities=0% Similarity=-0.150 Sum_probs=17.7
Q ss_pred eeecCCCCceEEEecccccccCCCCCCCcccccc
Q 042367 323 ELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASD 356 (428)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 356 (428)
.|+|+.||++.. + ..+..||.||.+
T Consensus 138 ~~~C~~CG~i~~----~-----~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAV----D-----EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEE----S-----CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeC----C-----CCCCCCCCCCCC
Confidence 489999998432 1 123479999976
No 34
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=81.34 E-value=3.8 Score=33.31 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=57.2
Q ss_pred cCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcH
Q 042367 286 GQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGL 365 (428)
Q Consensus 286 ~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~ 365 (428)
.+.+.....|..+|.+|++.|.+..++|..|... ..+
T Consensus 20 ~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p-------------------------------------------~~i 56 (113)
T 3jyw_G 20 SPKPYAVKYGLNHVVALIENKKAKLVLIANDVDP-------------------------------------------IEL 56 (113)
T ss_dssp SSSSSCEEESHHHHHHTTTTTCCSEEEECSCCSS-------------------------------------------HHH
T ss_pred CCCCchhhchHHHHHHHHHcCCceEEEEeCCCCH-------------------------------------------HHH
Confidence 3455678899999999999999999999877641 122
Q ss_pred HHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEeccc
Q 042367 366 LEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQ 407 (428)
Q Consensus 366 v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiLRf~ 407 (428)
+..|...+..+|.-+.++++..+.|.-+=...--+.||+-+.
T Consensus 57 ~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~~a~vai~d~~ 98 (113)
T 3jyw_G 57 VVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVR 98 (113)
T ss_dssp HTTHHHHHHHTTCCCEECSCSTTTHHHHCSSSCCSEEEECSC
T ss_pred HHHHHHHHHHcCCCEEEECCHHHHHHHHCCCCcEEEEEEeCC
Confidence 444778899999999999999888865322222345555444
No 35
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=80.87 E-value=1.5 Score=37.33 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccc
Q 042367 278 IGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDL 357 (428)
Q Consensus 278 l~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 357 (428)
|.+++....+. +..+.|..++.+|++.|.+..+++.+|..
T Consensus 28 L~~vLk~A~~~-g~l~~G~~et~Kal~kg~a~LvvLA~D~~--------------------------------------- 67 (143)
T 3u5c_M 28 LKVVLRTALVH-DGLARGLRESTKALTRGEALLVVLVSSVT--------------------------------------- 67 (143)
T ss_dssp HHHHHHHHHHT-TCEEESHHHHHHHHSSTTCSCEECCSCCS---------------------------------------
T ss_pred HHHHHHHHHHc-CCEeEcHHHHHHHHhcCceeEEEEeCCCC---------------------------------------
Confidence 34444443333 78999999999999999999999887653
Q ss_pred hhhhhhcHHHHHHHHHH--hcCCEEEEECCCCchhh
Q 042367 358 KVEGKMGLLEWLVDHYK--QFGCSLEIVTDKSQEGS 391 (428)
Q Consensus 358 ~~~~~~~~v~~L~~~a~--~~ga~V~ivs~~~~~G~ 391 (428)
..+++..+...+. .++..+..|++..+.|.
T Consensus 68 ----~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~ 99 (143)
T 3u5c_M 68 ----EANIIKLVEGLANDPENKVPLIKVADAKQLGE 99 (143)
T ss_dssp ----TTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHH
T ss_pred ----HHHHHHHHHHHHhhhhhCCCEEEECCHHHHhH
Confidence 0123555667888 89999999998665554
No 36
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=74.28 E-value=6.1 Score=36.65 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=50.1
Q ss_pred ceEecHHHHHHHHHcc--CccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHH
Q 042367 291 KFVVGVDDSVKALEMG--AIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEW 368 (428)
Q Consensus 291 ~a~yG~~~V~~Al~~G--aV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~ 368 (428)
-.+||...|.+|++.| .+++|+++++... . . ...
T Consensus 13 ~~veG~~~V~eal~~~~~~i~~l~~~~~~~~-------~------------------------------------~-~~~ 48 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPERFQEVFILKGRED-------K------------------------------------R-LLP 48 (253)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCC-------T------------------------------------T-THH
T ss_pred EEEEEHHHHHHHHhcCCCCeEEEEEECCccc-------h------------------------------------h-HHH
Confidence 5789999999999998 5999999876430 0 0 234
Q ss_pred HHHHHHhcCCEEEEECCCCchhhhh--hcccccEEEEeccc
Q 042367 369 LVDHYKQFGCSLEIVTDKSQEGSQF--CRGFGGIGGILRYQ 407 (428)
Q Consensus 369 L~~~a~~~ga~V~ivs~~~~~G~q~--L~~lgGIaAiLRf~ 407 (428)
+++.+...|..+..++..-- .++ .....||.|+.+.+
T Consensus 49 l~~~~~~~~i~v~~v~~~~l--~~ls~~~~~qGv~a~~~~~ 87 (253)
T 1gz0_A 49 LIHALESQGVVIQLANRQYL--DEKSDGAVHQGIIARVKPG 87 (253)
T ss_dssp HHHHHHHHTCEEEEECSHHH--HHTTTSCCCTTEEEEECCC
T ss_pred HHHHHHHCCCcEEEeCHHHH--HHHhCCCCCcEEEEEEecc
Confidence 66778888999999986321 111 13468999998753
No 37
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=72.92 E-value=4.5 Score=37.79 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=48.3
Q ss_pred CCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHH
Q 042367 287 QDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLL 366 (428)
Q Consensus 287 ~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v 366 (428)
+.++..+.|..+|..|++.|.+..+||+.|.... .++
T Consensus 131 k~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~-------------------------------------------ei~ 167 (266)
T 2zkr_f 131 KRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPI-------------------------------------------ELV 167 (266)
T ss_dssp SSCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSS-------------------------------------------TTT
T ss_pred CCCCeeeeChHHHHHHHHhCCceEEEEecCCCHH-------------------------------------------HHH
Confidence 3457789999999999999999999998876411 012
Q ss_pred HHHHHHHHhcCCEEEEECCCCchhhh
Q 042367 367 EWLVDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 367 ~~L~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
..|...+..+|.-+.+|.+..+.|.-
T Consensus 168 ~~Lp~LC~~~~VPyi~v~sk~eLG~A 193 (266)
T 2zkr_f 168 VFLPALCRKMGVPYCIIKGKARLGHL 193 (266)
T ss_dssp THHHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCHHHHHHH
Confidence 23567788889999998887776654
No 38
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=67.21 E-value=2.2 Score=38.36 Aligned_cols=25 Identities=8% Similarity=-0.292 Sum_probs=18.1
Q ss_pred eeecCCCCceEEEecccccccCCCCCCCcccccc
Q 042367 323 ELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASD 356 (428)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 356 (428)
.|+|+.||+... + ..+..||.||.+
T Consensus 171 ~~~C~~CG~i~~----g-----~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHK----G-----EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEE----S-----SCCSBCTTTCCB
T ss_pred EEEECCCCCEEc----C-----cCCCCCCCCCCC
Confidence 489999997431 1 234689999976
No 39
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=67.12 E-value=8.3 Score=36.29 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=47.5
Q ss_pred ceEecHHHHHHHHHcc-CccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHH
Q 042367 291 KFVVGVDDSVKALEMG-AIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWL 369 (428)
Q Consensus 291 ~a~yG~~~V~~Al~~G-aV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L 369 (428)
-.+||...|.+|++.| .+.+|+++++... + ..+
T Consensus 35 flveG~~~V~eaL~~~~~i~~l~~~~~~~~--------------------------------------------~--~~l 68 (277)
T 3nk6_A 35 TLIEDTEPLMECIRAGVQFIEVYGSSGTPL--------------------------------------------D--PAL 68 (277)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTSCC--------------------------------------------C--HHH
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEeCCccC--------------------------------------------c--HHH
Confidence 4789999999999998 7888888776430 0 236
Q ss_pred HHHHHhcCCEEEEECCCCchhhhh--hcccccEEEEeccc
Q 042367 370 VDHYKQFGCSLEIVTDKSQEGSQF--CRGFGGIGGILRYQ 407 (428)
Q Consensus 370 ~~~a~~~ga~V~ivs~~~~~G~q~--L~~lgGIaAiLRf~ 407 (428)
++.+...|..+..++..-- .++ .....||.|+.+.+
T Consensus 69 ~~~~~~~~~~v~~v~~~~l--~~ls~~~~~qGv~a~~~~~ 106 (277)
T 3nk6_A 69 LDLCRQREIPVRLIDVSIV--NQLFKAERKAKVFGIARVP 106 (277)
T ss_dssp HHHHHHTTCCEEEECHHHH--TTCC-----CCEEEEEECC
T ss_pred HHHHHhcCCcEEEECHHHH--HHhhCCCCCCeEEEEEecC
Confidence 7777888999999985311 110 13467999998866
No 40
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=63.15 E-value=13 Score=34.49 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=46.7
Q ss_pred CceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHH
Q 042367 290 GKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWL 369 (428)
Q Consensus 290 g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L 369 (428)
....+|..+|.+|++.|.+..++|..|.... .++..|
T Consensus 130 ~~lk~G~keV~KaIekgKAkLVVIA~DadP~-------------------------------------------eivk~L 166 (256)
T 3izc_H 130 YAVKYGLNHVVALIENKKAKLVLIANDVDPI-------------------------------------------ELVVFL 166 (256)
T ss_dssp CCEEESHHHHHHHHHHTCCSEEEEESCCSSG-------------------------------------------GGTTHH
T ss_pred hhhhccHHHHHHHHHhCcceEEEEeCCCChH-------------------------------------------HHHHHH
Confidence 3467899999999999999999998876411 112336
Q ss_pred HHHHHhcCCEEEEECCCCchhhh
Q 042367 370 VDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 370 ~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
...+..+|.-+.++.+..+.|.-
T Consensus 167 paLC~k~gVPy~~V~sK~eLG~A 189 (256)
T 3izc_H 167 PALCKKMGVPYAIVKGKARLGTL 189 (256)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHhcCCCEEEECCHHHHHHH
Confidence 77888999999999988777754
No 41
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=61.21 E-value=4 Score=36.28 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=26.3
Q ss_pred HHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCcccccc
Q 042367 296 VDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASD 356 (428)
Q Consensus 296 ~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 356 (428)
....++.++.|.+=.. ++ -..|+|+.||.... ..+ .+..||.||.+
T Consensus 135 ~~~~l~~l~~~~~~~~---~~----~~~~~C~~CG~~~~----g~~----~p~~CP~C~~~ 180 (191)
T 1lko_A 135 FLDFARNIKEGRVFLR---EQ----ATKWRCRNCGYVHE----GTG----APELCPACAHP 180 (191)
T ss_dssp HHHHHHHHHHTCSSEE---EE----EEEEEETTTCCEEE----EEE----CCSBCTTTCCB
T ss_pred HHHHHHhhhccccccc---CC----CceEEECCCCCEee----CCC----CCCCCCCCcCC
Confidence 3455556666664321 11 12489999997432 211 12379999986
No 42
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=60.15 E-value=9.2 Score=35.91 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=44.9
Q ss_pred ceEecHHHHHHHHHcc-CccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHH
Q 042367 291 KFVVGVDDSVKALEMG-AIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWL 369 (428)
Q Consensus 291 ~a~yG~~~V~~Al~~G-aV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L 369 (428)
-.+||...|.+|++.| .+++|+++++... .. ...+
T Consensus 29 f~veG~~~v~eal~~~~~i~~l~~~~~~~~-------------------------------------------~~-~~~l 64 (274)
T 1ipa_A 29 FLIEGAREIERALQAGIELEQALVWEGGLN-------------------------------------------PE-EQQV 64 (274)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTCCC-------------------------------------------HH-HHHH
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEEcCccc-------------------------------------------ch-HHHH
Confidence 4689999999999988 6889998876430 00 2335
Q ss_pred HHHHHhcC-CEEEEECCCCchhhhh--hcccccEEEEecccC
Q 042367 370 VDHYKQFG-CSLEIVTDKSQEGSQF--CRGFGGIGGILRYQP 408 (428)
Q Consensus 370 ~~~a~~~g-a~V~ivs~~~~~G~q~--L~~lgGIaAiLRf~i 408 (428)
++.+...| ..+..++..-- .++ .....||.|+.+.+-
T Consensus 65 ~~~~~~~~~~~v~~v~~~~l--~~ls~~~~~qGv~a~~~~~~ 104 (274)
T 1ipa_A 65 YAALGRVGRLALLEVSEAVL--KKLSVRDNPAGLIALARMPE 104 (274)
T ss_dssp HHCC-----CEEEEECHHHH--HHHCCSSSCCSEEEEEECCC
T ss_pred HHHHHhcCCccEEEeCHHHH--HHHhCCCCCCeEEEEEeCCC
Confidence 55566667 78888875311 110 124579999988653
No 43
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=53.44 E-value=18 Score=31.33 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=46.2
Q ss_pred CceEecHHHHHHHH--HccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHH
Q 042367 290 GKFVVGVDDSVKAL--EMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLE 367 (428)
Q Consensus 290 g~a~yG~~~V~~Al--~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~ 367 (428)
+..+-|+.++.+|+ +.|.+.-.++..|...+..+ .---. ..
T Consensus 34 ~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i------------------------------------~~hi~-~~ 76 (165)
T 2kg4_A 34 RTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDV------------------------------------ALQIH-FT 76 (165)
T ss_dssp TCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCH------------------------------------HHHHH-HH
T ss_pred CCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchh------------------------------------hhhcc-HH
Confidence 67899999999999 99999999998775411100 00000 11
Q ss_pred HHHHHHHhcCCEEEEECCCCchhhh
Q 042367 368 WLVDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 368 ~L~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
.+...+.+.|..+..|++....|+.
T Consensus 77 li~alC~E~~Ip~i~V~s~k~LG~a 101 (165)
T 2kg4_A 77 LIQAFCCENDINILRVSNPGRLAEL 101 (165)
T ss_dssp HHHHHHHHTTCCEEEESCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCHHHHHHH
Confidence 2557788999999999987665553
No 44
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=49.10 E-value=7.2 Score=33.49 Aligned_cols=60 Identities=5% Similarity=-0.069 Sum_probs=31.3
Q ss_pred ceEecHHHHHHHHHccCccEEEeeccCcc-ccceeecCCCCceEEEecccccccCCCCCCCccccccch
Q 042367 291 KFVVGVDDSVKALEMGAIHTLIVWEDLDI-NRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLK 358 (428)
Q Consensus 291 ~a~yG~~~V~~Al~~GaV~tLLv~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~ 358 (428)
..+.+-....+.++.-.|..+=+.+.+.. ..+.++|..|++. |-.. .....||.||.++.
T Consensus 99 ~lvT~D~~l~~vA~~~Gv~v~~~~~~i~~~~~~~y~C~~Cg~~---~~~~-----~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 99 EIFSDDYNVQNIASLLGLRFRTLKRGIKKVIKWRYVCIGCGRK---FSTL-----PPGGVCPDCGSKVK 159 (165)
T ss_dssp CEECCCHHHHHHHHHTTCCEECCSCCCSSCCCCCEEESSSCCE---ESSC-----CGGGBCTTTCCBEE
T ss_pred eEEcCcHHHHHHHHHCCCeEEchhhhccccccEEEECCCCCCc---ccCC-----CCCCcCCCCCCcce
Confidence 34444344455555445555544422221 2346899999962 1000 11237999998854
No 45
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=47.74 E-value=33 Score=31.62 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=47.6
Q ss_pred CceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHH
Q 042367 290 GKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWL 369 (428)
Q Consensus 290 g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L 369 (428)
-...+|+.+|..+++.|...-++|..|.. ..+++-.|
T Consensus 126 ~~lk~GvneVTklVE~kKAqLVVIA~DVd-------------------------------------------PiElV~fL 162 (258)
T 3iz5_H 126 IVVKYGLNHVTYLIEQSKAQLVVIAHDVD-------------------------------------------PIELVVWL 162 (258)
T ss_dssp CCEEESHHHHHHHHHTTCEEEEEEESCCS-------------------------------------------STHHHHHH
T ss_pred ceeecccHHHHHHHHcCcceEEEEeCCCC-------------------------------------------hHHHHhHH
Confidence 34679999999999999999999887754 12356678
Q ss_pred HHHHHhcCCEEEEECCCCchhh
Q 042367 370 VDHYKQFGCSLEIVTDKSQEGS 391 (428)
Q Consensus 370 ~~~a~~~ga~V~ivs~~~~~G~ 391 (428)
-..+..+|.-..+|++....|.
T Consensus 163 PaLC~k~gVPY~iVk~KarLG~ 184 (258)
T 3iz5_H 163 PALCRKMEVPYCIVKGKARLGS 184 (258)
T ss_dssp HHHHTTTTCCEEEESCHHHHHH
T ss_pred HHHHHhcCCCeEEECCHHHHHH
Confidence 8889999999999998776664
No 46
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=45.24 E-value=78 Score=29.18 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=47.0
Q ss_pred CceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHH
Q 042367 290 GKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWL 369 (428)
Q Consensus 290 g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L 369 (428)
-....|+.+|..+++.|...-++|..|.. + .+++..|
T Consensus 123 ~~lk~GvneVtKaIekgKAqLVVIA~Dvd--------P-----------------------------------ielv~~L 159 (255)
T 4a17_F 123 IVLKYGLNHITTLIENKQAKLVVIAHDVD--------P-----------------------------------IELVIFL 159 (255)
T ss_dssp CCEEECHHHHHHHHHTSCCSEEEEESCCS--------S-----------------------------------THHHHHH
T ss_pred ceeecchHHHHHHHHcCCceEEEEeCCCC--------h-----------------------------------HHHHHHH
Confidence 34678999999999999999999987754 1 1235556
Q ss_pred HHHHHhcCCEEEEECCCCchhhh
Q 042367 370 VDHYKQFGCSLEIVTDKSQEGSQ 392 (428)
Q Consensus 370 ~~~a~~~ga~V~ivs~~~~~G~q 392 (428)
-..+..+|.-..+|++....|.-
T Consensus 160 PaLCee~~VPY~~V~sK~~LG~a 182 (255)
T 4a17_F 160 PQLCRKNDVPFAFVKGKAALGKL 182 (255)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHH
T ss_pred HHHHHHcCCCEEEECCHHHHHHH
Confidence 78888999999999987766653
No 47
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=41.87 E-value=13 Score=30.06 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=17.3
Q ss_pred eeecCCCCceEEEecccccccCCCCC-CCcccccc
Q 042367 323 ELKQSVTNGIVIKHLNKKQEAEPSNF-KDSAAASD 356 (428)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~c~~~g~~ 356 (428)
.|+|.+|+... .+ ..... .||.||++
T Consensus 73 ~~~C~~CG~~~--e~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVF--KP------NALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEE--CS------CCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEE--eC------CCCCCCcCccccCC
Confidence 37999999621 11 12245 79999986
No 48
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=37.22 E-value=18 Score=24.36 Aligned_cols=30 Identities=3% Similarity=-0.064 Sum_probs=17.5
Q ss_pred eecCCCCceEEEecccccccCCCCCCCccccccc
Q 042367 324 LKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDL 357 (428)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 357 (428)
++|-.|+. ..+.++........||.||=+.
T Consensus 4 Y~C~rCg~----~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 4 YRCGKCWK----TFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp -CCCCTTT----TCCCCCSCCCSSSCCTTTCCSC
T ss_pred EEeeccCC----CccHHHHhhCCCcccCccCcEE
Confidence 57777774 1233443333456899999663
No 49
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=37.16 E-value=18 Score=30.25 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=11.8
Q ss_pred EEEeeccCccccceeecCCCCc
Q 042367 310 TLIVWEDLDINRYELKQSVTNG 331 (428)
Q Consensus 310 tLLv~d~~~~~~~~~~~~~~~~ 331 (428)
.|.|.+... .|+|.+||.
T Consensus 61 ~L~i~~~p~----~~~C~~CG~ 78 (139)
T 3a43_A 61 EIEFVEEEA----VFKCRNCNY 78 (139)
T ss_dssp EEEEEEECC----EEEETTTCC
T ss_pred EEEEEecCC----cEECCCCCC
Confidence 455544332 479999997
No 50
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=35.30 E-value=64 Score=25.89 Aligned_cols=55 Identities=5% Similarity=0.037 Sum_probs=41.5
Q ss_pred CceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHH
Q 042367 290 GKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWL 369 (428)
Q Consensus 290 g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L 369 (428)
|.-++|.++..+.++...|+.++|+-... .......+
T Consensus 48 g~pV~g~~~l~~~~~~~~id~viia~~~~-------------------------------------------~~~~~~~i 84 (141)
T 3nkl_A 48 GITIYRPKYLERLIKKHCISTVLLAVPSA-------------------------------------------SQVQKKVI 84 (141)
T ss_dssp TEEEECGGGHHHHHHHHTCCEEEECCTTS-------------------------------------------CHHHHHHH
T ss_pred CeEEECHHHHHHHHHHCCCCEEEEeCCCC-------------------------------------------CHHHHHHH
Confidence 56688988888888999999998863321 01125568
Q ss_pred HHHHHhcCCEEEEECCCC
Q 042367 370 VDHYKQFGCSLEIVTDKS 387 (428)
Q Consensus 370 ~~~a~~~ga~V~ivs~~~ 387 (428)
++.+...|.+|.++|+-.
T Consensus 85 ~~~l~~~gv~v~~vP~~~ 102 (141)
T 3nkl_A 85 IESLAKLHVEVLTIPNLD 102 (141)
T ss_dssp HHHHHTTTCEEEECCCHH
T ss_pred HHHHHHcCCeEEECCCHH
Confidence 889999999999999843
No 51
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.65 E-value=23 Score=25.55 Aligned_cols=29 Identities=0% Similarity=-0.114 Sum_probs=18.8
Q ss_pred ceeecCCCCceEEEecccccccCCCCCCCccccccc
Q 042367 322 YELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDL 357 (428)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 357 (428)
+.++|.+|+... .++ ......||.||.+.
T Consensus 20 v~Y~C~~Cg~~~--~l~-----~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARN--TIQ-----AKEVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBC--CCC-----SSSCCCCSSSCCCC
T ss_pred eEEECCCCCCee--ecC-----CCCceECCCCCcEE
Confidence 347999998521 121 22457899999874
No 52
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.79 E-value=27 Score=25.65 Aligned_cols=29 Identities=3% Similarity=0.054 Sum_probs=18.7
Q ss_pred ceeecCCCCceEEEecccccccCCCCCCCccccccc
Q 042367 322 YELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDL 357 (428)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 357 (428)
+.++|.+|+..- .+. ......||.||.+.
T Consensus 27 v~Y~C~~CG~~~--e~~-----~~d~irCp~CG~RI 55 (70)
T 1twf_L 27 LKYICAECSSKL--SLS-----RTDAVRCKDCGHRI 55 (70)
T ss_dssp CCEECSSSCCEE--CCC-----TTSTTCCSSSCCCC
T ss_pred EEEECCCCCCcc--eeC-----CCCCccCCCCCceE
Confidence 457999999621 111 12356899999853
No 53
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=29.50 E-value=12 Score=27.62 Aligned_cols=32 Identities=6% Similarity=0.059 Sum_probs=19.1
Q ss_pred eeecCCCCceEEEecccccccCCCCCCCccccccchhhhh
Q 042367 323 ELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGK 362 (428)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~ 362 (428)
+++|| |+...+ ..+ ......|| ||..+.+...
T Consensus 4 vv~C~-C~~~~~--~~~----~~kT~~C~-CG~~~~~~k~ 35 (71)
T 1gh9_A 4 IFRCD-CGRALY--SRE----GAKTRKCV-CGRTVNVKDR 35 (71)
T ss_dssp EEEET-TSCCEE--EET----TCSEEEET-TTEEEECCSS
T ss_pred EEECC-CCCEEE--EcC----CCcEEECC-CCCeeeeceE
Confidence 46899 985321 111 22345799 9998766533
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.24 E-value=27 Score=27.62 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=6.9
Q ss_pred Cccccccchh
Q 042367 350 DSAAASDLKV 359 (428)
Q Consensus 350 c~~~g~~~~~ 359 (428)
||.||.++..
T Consensus 50 CPvCgs~l~~ 59 (112)
T 1l8d_A 50 CPVCGRELTD 59 (112)
T ss_dssp CTTTCCEECH
T ss_pred CCCCCCcCCH
Confidence 7778777654
No 55
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=29.19 E-value=23 Score=26.80 Aligned_cols=29 Identities=31% Similarity=0.207 Sum_probs=16.6
Q ss_pred CCccccccchhhhhhcHHHHHHHHHHhcCCEEEEEC
Q 042367 349 KDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVT 384 (428)
Q Consensus 349 ~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs 384 (428)
.||.||.++. ..+||+.....+--=++++
T Consensus 10 ~~PlCG~~L~-------W~eLIeQML~~en~~ei~k 38 (95)
T 2k5c_A 10 KCPICGSPLK-------WEELIEEMLIIENFEEIVK 38 (95)
T ss_dssp ECSSSCCEEC-------HHHHHHHSTTCSTHHHHTT
T ss_pred cCCcCCCccC-------HHHHHHHHHhhccHHHHHh
Confidence 5999998864 4446665444433333333
No 56
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.62 E-value=47 Score=22.24 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=17.6
Q ss_pred eecCCCCceEEEeccccccc------CCCCCCCcccccc
Q 042367 324 LKQSVTNGIVIKHLNKKQEA------EPSNFKDSAAASD 356 (428)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~------~~~~~~c~~~g~~ 356 (428)
|+|..||.. | .|+... -.....||.||..
T Consensus 5 y~C~vCGyv---y-d~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYE---Y-DPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCE---E-CGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeE---E-eCCcCCCcchhhCCCCCcCcCCCCc
Confidence 699999962 1 332211 1234689999975
No 57
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.52 E-value=1e+02 Score=24.49 Aligned_cols=44 Identities=7% Similarity=-0.122 Sum_probs=25.4
Q ss_pred HHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCCCCCcccccc
Q 042367 297 DDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASD 356 (428)
Q Consensus 297 ~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 356 (428)
+++.+.+...- ..|+|.+ ++|.+||. .|.++- ..+..||.|+.+
T Consensus 50 eHIaksl~r~g-~~L~v~p--------~~C~~CG~---~F~~~~----~kPsrCP~CkSe 93 (105)
T 2gmg_A 50 KVISKIAKREG-MVLLIKP--------AQCRKCGF---VFKAEI----NIPSRCPKCKSE 93 (105)
T ss_dssp HHHHHHHTTTT-EEEEECC--------CBBTTTCC---BCCCCS----SCCSSCSSSCCC
T ss_pred HHHHHHHhcCC-cEEEEEC--------cChhhCcC---eecccC----CCCCCCcCCCCC
Confidence 44555554311 3666643 38999997 232111 235689999875
No 58
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.86 E-value=50 Score=24.97 Aligned_cols=30 Identities=7% Similarity=-0.008 Sum_probs=18.4
Q ss_pred eeecCCCCceEEEecccccc------c-------CCCCCCCcccccc
Q 042367 323 ELKQSVTNGIVIKHLNKKQE------A-------EPSNFKDSAAASD 356 (428)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~c~~~g~~ 356 (428)
.|+|..|++. | .|+.. + -...+.||.||..
T Consensus 27 ~y~C~vCGyv---Y-D~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFE---Y-DEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCE---E-ETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEE---E-cCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4899999973 2 33221 0 1134589999975
No 59
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.39 E-value=63 Score=23.64 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=18.1
Q ss_pred eeecCCCCceEEEecccccc------c-------CCCCCCCcccccc
Q 042367 323 ELKQSVTNGIVIKHLNKKQE------A-------EPSNFKDSAAASD 356 (428)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~c~~~g~~ 356 (428)
.|+|..|++. ..|+.. + -...+.||.||..
T Consensus 7 ~y~C~vCGyi----Yd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYI----YEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCE----ECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEE----EcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 3799999973 233220 0 1234589999975
Done!