BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042370
         (321 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
           Arabidopsis Thaliana
 pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
           Arabidopsis Thaliana
          Length = 995

 Score = 30.4 bits (67), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 78  IGGVEITRPDLFNNGIIV------IHGIQGDISPLSPLSCE 112
           I GV++ R DLF N II       I  ++ ++ PL PL C+
Sbjct: 559 INGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQ 599


>pdb|3VU1|A Chain A, Crystal Structure Of The C-terminal Globular Domain Of
           Oligosaccharyltransferase (phaglb-l, O74088_pyrho) From
           Pyrococcus Horikoshii
 pdb|3VU1|B Chain B, Crystal Structure Of The C-terminal Globular Domain Of
           Oligosaccharyltransferase (phaglb-l, O74088_pyrho) From
           Pyrococcus Horikoshii
          Length = 506

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 172 ITLTTMTVFALDDMSIFS----SSLVYISNVR---LPVGTTLPTLKRGQSLTVTRA--GV 222
           I   T+ V+AL+   I        + Y++++    + V  TLPT ++ + +   +   GV
Sbjct: 290 IKNATLYVYALNGTKIIKRIKVGEIKYMNHLEEYPIIVNVTLPTAQKYRFILAQKGPVGV 349

Query: 223 VTGPLRIN 230
           +TGP+R+N
Sbjct: 350 LTGPVRVN 357


>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
           Complex
 pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
           Complex
          Length = 594

 Score = 28.1 bits (61), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 30  LETLFTATPLQKQATSLVSDFNDQSSSPGRCITV 63
           LE ++  TP +K   SL+SDF D  ++  R   V
Sbjct: 71  LEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHV 104


>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
          Length = 606

 Score = 28.1 bits (61), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 30  LETLFTATPLQKQATSLVSDFNDQSSSPGRCITV 63
           LE ++  TP +K   SL+SDF D  ++  R   V
Sbjct: 83  LEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHV 116


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,659,606
Number of Sequences: 62578
Number of extensions: 335201
Number of successful extensions: 697
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 5
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)