BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042370
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FL53|FLA21_ARATH Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana
GN=FLA21 PE=2 SV=1
Length = 353
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 112/268 (41%), Gaps = 41/268 (15%)
Query: 19 LIITKSAAF---TDLETLFTATPLQKQATSLVSDFNDQSSSP-GRCI-TVTSSKS-QNDT 72
L + A+F + L LF L L+ +D P G C+ T+ KS Q T
Sbjct: 84 LFAIEDASFFNTSSLHPLFLKQLLHYHTLPLMLSMDDLLKKPQGTCLPTLLHHKSVQIST 143
Query: 73 VSE----AFIGGVEITRPDLFNNGIIVIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDH 128
V++ A + V IT PD+F +VIHG+ G SPL P S + P L QS
Sbjct: 144 VNQESRTAEVNHVRITHPDMFLGDSLVIHGVIGPFSPLQPHS---DHLIHTP-LCQSDTT 199
Query: 129 EHYHWIEAQPLIMSLMLRDAMLRLQNNGFSMLSLAMKVNCQELI-------TLTTMTVFA 181
E P+ S+ + L +NGF ++ + ++ LT +T+ A
Sbjct: 200 NKTSNNEEVPV--SIDWTRIVQLLSSNGFVPFAIGLHSVLNRIVNDHNHHKNLTGVTILA 257
Query: 182 LDDMSIFSSS----------------LVYISNVRLPVGTTLPTLKRGQSLTVTRAGVVT- 224
++ SS+ L Y + T+ TL Q LT+TR V +
Sbjct: 258 TPNLVSLSSASPFLYEVVRHHILVQRLTYKDFASMSDKATVKTLDPYQDLTITRRNVNSS 317
Query: 225 -GPLRINLVRVMVPDIMNNLKIVVYGVN 251
G I+ V ++ PD+ ++ V++G++
Sbjct: 318 GGDFMISGVEIVDPDMFSSSNFVIHGIS 345
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 178 TVFALDDMSIFSSS---------LVYISNVRL----------PVGTTLPTLKRGQSLTVT 218
T+FA++D S F++S L++ + L P GT LPTL +S+ ++
Sbjct: 83 TLFAIEDASFFNTSSLHPLFLKQLLHYHTLPLMLSMDDLLKKPQGTCLPTLLHHKSVQIS 142
Query: 219 RAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPF 254
+ +N VR+ PD+ +V++GV PF
Sbjct: 143 TVNQESRTAEVNHVRITHPDMFLGDSLVIHGVIGPF 178
>sp|Q9FGW0|FLA20_ARATH Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis
thaliana GN=FLA20 PE=3 SV=1
Length = 424
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 19/116 (16%)
Query: 152 LQNNGFSMLSLAMKVNCQEL--ITLTTMTVFALDDMSIFSS-------SLVY-ISNVRLP 201
L ++G+ + L +K+ Q+L +T+FA D S FS + Y +S RLP
Sbjct: 76 LSDSGYLSMGLTLKLANQDLNLEDWQELTLFAPSDQS-FSKFGQPSLLDMKYQLSPTRLP 134
Query: 202 --------VGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYG 249
G +PTL+ SLTVT + G IN V V + ++ +V+YG
Sbjct: 135 GETLRNLPNGAKIPTLRSNYSLTVTNSSRFGGKTSINNVVVQDSPVFDDGYVVIYG 190
>sp|Q5Q0H2|FLA19_ARATH Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana
GN=FLA19 PE=2 SV=2
Length = 248
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 57 PGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPLS 107
P + +T S ND++ F+ GV++ P LF+ I +HG+ D+ PL+
Sbjct: 123 PSHRLLLTKHSSSNDSI---FLDGVQLLIPGLFDGQHIAVHGL-ADLLPLT 169
>sp|B4RKF2|RL25_NEIG2 50S ribosomal protein L25 OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=rplY PE=3 SV=1
Length = 190
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 150 LRLQNNGFSMLSLAMKVNCQELITLTTMTVF-ALDDMSIFSSSLVYISNVRLPVGTTLPT 208
++LQ S+L+ A++V L + F LD + + ++++S+++LP G +
Sbjct: 118 VKLQGGRVSLLNTAVEV----LALPANIPAFLDLDCAEVVAGDILHLSDIKLPEGVESVS 173
Query: 209 LKRGQSLTVTRAGVVTGPLR 228
LKR ++L V VTG R
Sbjct: 174 LKRNENLAV---ATVTGKKR 190
>sp|Q5F9F4|RL25_NEIG1 50S ribosomal protein L25 OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=rplY PE=3 SV=1
Length = 190
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 150 LRLQNNGFSMLSLAMKVNCQELITLTTMTVF-ALDDMSIFSSSLVYISNVRLPVGTTLPT 208
++LQ S+L+ A++V L + F LD + + ++++S+++LP G +
Sbjct: 118 VKLQGGRVSLLNTAVEV----LALPANIPAFLDLDCAEVVAGDILHLSDIKLPEGVESVS 173
Query: 209 LKRGQSLTVTRAGVVTGPLR 228
LKR ++L V VTG R
Sbjct: 174 LKRNENLAV---ATVTGKKR 190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,396,649
Number of Sequences: 539616
Number of extensions: 4258501
Number of successful extensions: 9739
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9732
Number of HSP's gapped (non-prelim): 11
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)