Query 042370
Match_columns 321
No_of_seqs 57 out of 59
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:34:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00554 FAS1 Four repeated 98.6 7.6E-08 1.6E-12 74.8 4.6 74 178-254 1-96 (99)
2 PF02469 Fasciclin: Fasciclin 98.2 2E-06 4.4E-11 69.0 4.6 98 156-255 2-127 (128)
3 smart00554 FAS1 Four repeated 97.1 0.00081 1.7E-08 52.2 4.7 55 45-105 44-98 (99)
4 COG2335 Secreted and surface p 90.7 0.64 1.4E-05 43.0 6.1 95 153-252 56-177 (187)
5 PF02469 Fasciclin: Fasciclin 88.0 0.43 9.3E-06 38.2 2.6 58 43-105 69-128 (128)
6 PRK07758 hypothetical protein; 29.5 36 0.00079 28.7 1.8 36 141-177 40-75 (95)
7 COG2335 Secreted and surface p 18.7 1.6E+02 0.0035 27.5 4.0 78 23-107 88-183 (187)
8 PRK13884 conjugal transfer pep 17.2 1.9E+02 0.0042 26.0 4.1 56 176-236 55-116 (178)
9 PF07499 RuvA_C: RuvA, C-termi 16.6 1.2E+02 0.0027 21.5 2.2 18 143-160 1-18 (47)
10 COG4959 TraF Type IV secretory 15.8 2.1E+02 0.0045 26.6 3.9 70 176-261 58-130 (173)
No 1
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=98.56 E-value=7.6e-08 Score=74.81 Aligned_cols=74 Identities=35% Similarity=0.403 Sum_probs=58.4
Q ss_pred EEEecCcchhhccccc---cc------cc-cc------------CCCCcccccccCCCeEEEEecCCcccceEEccEEee
Q 042370 178 TVFALDDMSIFSSSLV---YI------SN-VR------------LPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVM 235 (321)
Q Consensus 178 TIFAP~D~ai~~~~s~---yl------s~-lR------------LP~GT~LpTLlpgq~LtVTts~~~~~~v~INgV~I~ 235 (321)
|||||+|+||.+.... .+ .. ++ |..|..++|+. |+.|.|+..++ .+.+.||+++|.
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~~~~~~Tl~-g~~l~v~~~~~-~~~i~in~~~v~ 78 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLNGGTLPTLA-GSKLRVTRSGD-SGTVTVNGARIV 78 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhccCCccccCC-CCEEEEEEeCC-CCeEEEcceEEE
Confidence 8999999999875331 11 11 11 66789999998 99999998764 247999999999
Q ss_pred cCCceeCCeEEEeccCCCC
Q 042370 236 VPDIMNNLKIVVYGVNLPF 254 (321)
Q Consensus 236 ~PDif~n~~LVVHGv~~pF 254 (321)
.+|+..+. -+||+|++..
T Consensus 79 ~~di~~~n-Gvih~Id~vL 96 (99)
T smart00554 79 EADIAATN-GVVHVIDRVL 96 (99)
T ss_pred ECCEecCC-eEEEEECcee
Confidence 99999875 8999999654
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=98.19 E-value=2e-06 Score=68.97 Aligned_cols=98 Identities=26% Similarity=0.246 Sum_probs=67.3
Q ss_pred ChhHHHHHHh-hchh-hh-cCCCCeEEEecCcchhhcccc---cc-------ccc-cc------------CCCC-ccccc
Q 042370 156 GFSMLSLAMK-VNCQ-EL-ITLTTMTVFALDDMSIFSSSL---VY-------ISN-VR------------LPVG-TTLPT 208 (321)
Q Consensus 156 Gy~~mAlaL~-l~~~-~L-~~~~nlTIFAP~D~ai~~~~s---~y-------ls~-lR------------LP~G-T~LpT 208 (321)
.|+.|+-+|+ ..+. .+ ....+.|||||+|+||...+. .+ +.. ++ |..+ ..++|
T Consensus 2 ~~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~~~~~t 81 (128)
T PF02469_consen 2 DLSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGKQTLET 81 (128)
T ss_dssp TTHHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHHEEEEB
T ss_pred CHHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccccccee
Confidence 3555555555 2222 25 456799999999999954311 11 111 11 7777 89999
Q ss_pred ccCCCeEEEEecCCcccceEEcc-EEeecCCceeCCeEEEeccCCCCC
Q 042370 209 LKRGQSLTVTRAGVVTGPLRINL-VRVMVPDIMNNLKIVVYGVNLPFP 255 (321)
Q Consensus 209 Llpgq~LtVTts~~~~~~v~INg-V~I~~PDif~n~~LVVHGv~~pFp 255 (321)
++.|+.+.|+.. ...+.+.+|+ .+|..+|+.-+. -+||.|+..+-
T Consensus 82 ~~~g~~~~v~~~-~~~~~~~v~~~a~i~~~~~~~~n-G~ih~id~vL~ 127 (128)
T PF02469_consen 82 LLNGQPLRVSSS-PSNGTIYVNGKARIVKSDIEASN-GVIHIIDDVLI 127 (128)
T ss_dssp SSTTCEEEEEEE-GGTTEEEECCEEEESEEEEEESS-EEEEEESS-TS
T ss_pred ccCCCEEEEEEE-ecCCceEecCceEEEeCCEEeCC-EEEEEECceEC
Confidence 999999999988 2234799999 999999995555 88999998753
No 3
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=97.10 E-value=0.00081 Score=52.22 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=46.8
Q ss_pred cCCCccccCCCCCCceEEEeecCCCCCccceEEECcEEecCCCcccCCeEEEecccCCCCC
Q 042370 45 SLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISP 105 (321)
Q Consensus 45 sL~~g~KIpT~~pG~cLtVts~~~~~~~~~~v~INgV~Is~pdLfddG~lVIhGv~gffsp 105 (321)
.|..+.+++|+. |..|+|+.+.+. +.++|||++|.++|+.-++ -+||++++.+-|
T Consensus 44 ~l~~~~~~~Tl~-g~~l~v~~~~~~----~~i~in~~~v~~~di~~~n-Gvih~Id~vL~P 98 (99)
T smart00554 44 DLLNGGTLPTLA-GSKLRVTRSGDS----GTVTVNGARIVEADIAATN-GVVHVIDRVLLP 98 (99)
T ss_pred HhccCCccccCC-CCEEEEEEeCCC----CeEEEcceEEEECCEecCC-eEEEEECceeCC
Confidence 455688999987 999999888753 5799999999999998876 899999998765
No 4
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=90.73 E-value=0.64 Score=43.01 Aligned_cols=95 Identities=21% Similarity=0.257 Sum_probs=60.1
Q ss_pred HhCChhHHHHHHhhch--hhhcCCCCeEEEecCcchhhcccc----cccc--------cc-c------------CCCCcc
Q 042370 153 QNNGFSMLSLAMKVNC--QELITLTTMTVFALDDMSIFSSSL----VYIS--------NV-R------------LPVGTT 205 (321)
Q Consensus 153 rssGy~~mAlaL~l~~--~~L~~~~nlTIFAP~D~ai~~~~s----~yls--------~l-R------------LP~GT~ 205 (321)
.+.-|.-+-.++.-.. +.|+.-.++|||||+|+||-+-+. .++. ++ . +-.+..
T Consensus 56 ~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~~~~l~~~~~ 135 (187)
T COG2335 56 NNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKITAADLKSSGS 135 (187)
T ss_pred cCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCcccHHHhhcccc
Confidence 3344666666655222 135666789999999999977532 2222 21 1 222333
Q ss_pred cccccCCCeEEEEecCCcccceEEccEEeecCCceeCCeEEEeccCC
Q 042370 206 LPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNL 252 (321)
Q Consensus 206 LpTLlpgq~LtVTts~~~~~~v~INgV~I~~PDif~n~~LVVHGv~~ 252 (321)
..| +.|.+|.|...++ ++.||.-.+..+|+-- ++-|||=|+.
T Consensus 136 v~t-~~G~~~~i~~~~~---~~~Vn~a~v~~~di~a-~NgvIhvID~ 177 (187)
T COG2335 136 VKT-VQGADLKIKVTGG---GVYVNDATVTIADINA-SNGVIHVIDK 177 (187)
T ss_pred cee-ecCceEEEEEcCC---cEEEeeeEEEeccEec-cCcEEEEEee
Confidence 333 3678888887765 4999998888888754 5668898883
No 5
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=88.01 E-value=0.43 Score=38.19 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=45.3
Q ss_pred hccCCCc-cccCCCCCCceEEEeecCCCCCccceEEECc-EEecCCCcccCCeEEEecccCCCCC
Q 042370 43 ATSLVSD-FNDQSSSPGRCITVTSSKSQNDTVSEAFIGG-VEITRPDLFNNGIIVIHGIQGDISP 105 (321)
Q Consensus 43 l~sL~~g-~KIpT~~pG~cLtVts~~~~~~~~~~v~INg-V~Is~pdLfddG~lVIhGv~gffsp 105 (321)
...|..+ .+++|...|.-+.|+...+. ++++||| +.|..+|+.-++ =+||.+++.+-|
T Consensus 69 ~~~l~~~~~~~~t~~~g~~~~v~~~~~~----~~~~v~~~a~i~~~~~~~~n-G~ih~id~vL~P 128 (128)
T PF02469_consen 69 SSDLRNGKQTLETLLNGQPLRVSSSPSN----GTIYVNGKARIVKSDIEASN-GVIHIIDDVLIP 128 (128)
T ss_dssp HCHHHCHHEEEEBSSTTCEEEEEEEGGT----TEEEECCEEEESEEEEEESS-EEEEEESS-TSS
T ss_pred hhhhccccccceeccCCCEEEEEEEecC----CceEecCceEEEeCCEEeCC-EEEEEECceECc
Confidence 3456677 78899899999999888322 7899999 999988874444 788999998876
No 6
>PRK07758 hypothetical protein; Provisional
Probab=29.47 E-value=36 Score=28.67 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHhhchhhhcCCCCe
Q 042370 141 MSLMLRDAMLRLQNNGFSMLSLAMKVNCQELITLTTM 177 (321)
Q Consensus 141 ~r~~lrdA~~~LrssGy~~mAlaL~l~~~~L~~~~nl 177 (321)
.+++.| |.+.|+..|+..++-......++|.++.|+
T Consensus 40 ~~LSvR-A~N~Lk~AGI~TL~dLv~~te~ELl~iknl 75 (95)
T PRK07758 40 SLLSAP-ARRALEHHGIHTVEELSKYSEKEILKLHGM 75 (95)
T ss_pred ccccHH-HHHHHHHcCCCcHHHHHcCCHHHHHHccCC
Confidence 357788 999999999999999999888887665553
No 7
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=18.67 E-value=1.6e+02 Score=27.55 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=52.8
Q ss_pred ccccccCchhHHHhhHHH--hh--h-----ccCCCccccC---------CCCCCceEEEeecCCCCCccceEEECcEEec
Q 042370 23 KSAAFTDLETLFTATPLQ--KQ--A-----TSLVSDFNDQ---------SSSPGRCITVTSSKSQNDTVSEAFIGGVEIT 84 (321)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~--~~--l-----~sL~~g~KIp---------T~~pG~cLtVts~~~~~~~~~~v~INgV~Is 84 (321)
-.+||..||.-=...+|+ +. | +-...|.-.+ +-..|.|+++..+.+. ++||.-.++
T Consensus 88 tn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~~~~l~~~~~v~t~~G~~~~i~~~~~~------~~Vn~a~v~ 161 (187)
T COG2335 88 TNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKITAADLKSSGSVKTVQGADLKIKVTGGG------VYVNDATVT 161 (187)
T ss_pred CHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCcccHHHhhccccceeecCceEEEEEcCCc------EEEeeeEEE
Confidence 356788888766666665 11 1 1112222111 2347999999888773 999999999
Q ss_pred CCCcccCCeEEEecccCCCCCCC
Q 042370 85 RPDLFNNGIIVIHGIQGDISPLS 107 (321)
Q Consensus 85 ~pdLfddG~lVIhGv~gffspl~ 107 (321)
..| ++=+.=|||=+|..+=|..
T Consensus 162 ~~d-i~a~NgvIhvID~Vl~Pp~ 183 (187)
T COG2335 162 IAD-INASNGVIHVIDKVLIPPM 183 (187)
T ss_pred ecc-EeccCcEEEEEeeeccCCC
Confidence 999 6777889999998876654
No 8
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=17.21 E-value=1.9e+02 Score=26.04 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=33.7
Q ss_pred CeEEEecCcchhhcc--cccccccccCCCCc--cccccc--CCCeEEEEecCCcccceEEccEEeec
Q 042370 176 TMTVFALDDMSIFSS--SLVYISNVRLPVGT--TLPTLK--RGQSLTVTRAGVVTGPLRINLVRVMV 236 (321)
Q Consensus 176 nlTIFAP~D~ai~~~--~s~yls~lRLP~GT--~LpTLl--pgq~LtVTts~~~~~~v~INgV~I~~ 236 (321)
.+=+|+|+|.+.+.- ...|+..=..|.|+ .++-.. ||+.++++.. .+.|||.++..
T Consensus 55 d~V~f~~p~~~~~~~a~~rgyl~~g~~p~~~~~liKRVva~pGD~V~~~~~-----~l~VNG~~v~~ 116 (178)
T PRK13884 55 AYVLFCPPQRGVFDDAKERGYIGAGFCPGGYGYMMKRVLAAKGDAVSVTDD-----GVRVNGELLPL 116 (178)
T ss_pred CEEEEeCCchHHHHHHHhCCccccCcCCCCCCceEEEEEeeCCcEEEEECC-----EEEECCEEccc
Confidence 466677666554432 23444332245443 345554 8999998743 59999998854
No 9
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=16.62 E-value=1.2e+02 Score=21.50 Aligned_cols=18 Identities=33% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCChhHH
Q 042370 143 LMLRDAMLRLQNNGFSML 160 (321)
Q Consensus 143 ~~lrdA~~~LrssGy~~m 160 (321)
.+..||++.|.+.||.-=
T Consensus 1 d~~~d~~~AL~~LGy~~~ 18 (47)
T PF07499_consen 1 DALEDALEALISLGYSKA 18 (47)
T ss_dssp HHHHHHHHHHHHTTS-HH
T ss_pred CHHHHHHHHHHHcCCCHH
Confidence 367899999999999753
No 10
>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=15.84 E-value=2.1e+02 Score=26.57 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=48.2
Q ss_pred CeEEEecCcchhhccc-ccccccccCCCCccccccc--CCCeEEEEecCCcccceEEccEEeecCCceeCCeEEEeccCC
Q 042370 176 TMTVFALDDMSIFSSS-LVYISNVRLPVGTTLPTLK--RGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNL 252 (321)
Q Consensus 176 nlTIFAP~D~ai~~~~-s~yls~lRLP~GT~LpTLl--pgq~LtVTts~~~~~~v~INgV~I~~PDif~n~~LVVHGv~~ 252 (321)
.+-+|+|++.+.+--. .-||.. .+-.++-++ +||.+.++.. .+.|||.++.. .+.+-+..+
T Consensus 58 ~lV~v~pP~~~a~~aA~RGYLp~----~~pllK~i~Alpgq~Vci~~~-----~I~I~G~~v~~-------sl~~D~~GR 121 (173)
T COG4959 58 DLVLVCPPQRAAFLAAQRGYLPP----YIPLLKRILALPGQHVCITSQ-----GIAIDGKPVAA-------SLPVDRVGR 121 (173)
T ss_pred CEEEECCCchHhHhHhhcCcccc----ccHHHHHHhcCCCCcEEEecc-----eEEECCEEeee-------eccccccCC
Confidence 5667777777765432 233322 223333333 8999999875 49999999877 455889999
Q ss_pred CCCCCCCCc
Q 042370 253 PFPYFGATA 261 (321)
Q Consensus 253 pFp~l~~~~ 261 (321)
+.|++|..-
T Consensus 122 ~lp~~~gcR 130 (173)
T COG4959 122 ALPRWQGCR 130 (173)
T ss_pred cCCcccCCc
Confidence 999999863
Done!