Query 042370
Match_columns 321
No_of_seqs 57 out of 59
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 09:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vxp_A Transforming growth fac 98.6 8.7E-08 3E-12 78.4 6.2 101 148-253 4-130 (132)
2 1o70_A Fasciclin I, FAS I, FCN 98.4 4.4E-07 1.5E-11 83.6 7.5 173 34-256 72-309 (324)
3 1w7d_A Fasciclin-like protein; 98.4 3.5E-07 1.2E-11 75.3 5.2 99 149-254 6-133 (137)
4 1nyo_A Immunogenic protein MPT 98.3 1.1E-06 3.7E-11 74.9 7.4 100 147-254 29-159 (163)
5 1o70_A Fasciclin I, FAS I, FCN 97.4 0.00011 3.9E-09 67.5 4.1 102 154-256 21-156 (324)
6 1w7d_A Fasciclin-like protein; 96.6 0.004 1.4E-07 50.9 6.6 63 34-106 66-136 (137)
7 2vxp_A Transforming growth fac 94.9 0.015 5E-07 47.3 3.1 61 34-103 63-131 (132)
8 1nyo_A Immunogenic protein MPT 94.7 0.062 2.1E-06 45.5 6.5 62 35-106 94-162 (163)
9 4egx_A Kinesin-like protein KI 64.7 5.8 0.0002 34.5 4.0 47 54-100 112-166 (184)
10 4ejq_A Kinesin-like protein KI 39.1 41 0.0014 28.0 5.0 47 53-99 81-135 (154)
11 3fm8_A Kinesin-like protein KI 22.8 76 0.0026 25.8 3.8 47 54-100 66-116 (124)
No 1
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=98.55 E-value=8.7e-08 Score=78.45 Aligned_cols=101 Identities=27% Similarity=0.231 Sum_probs=72.1
Q ss_pred HHHHHHh-CChhHHHHHHhhc-hh-hhcCCCCeEEEecCcchhhccccccc----------cc-cc------------CC
Q 042370 148 AMLRLQN-NGFSMLSLAMKVN-CQ-ELITLTTMTVFALDDMSIFSSSLVYI----------SN-VR------------LP 201 (321)
Q Consensus 148 A~~~Lrs-sGy~~mAlaL~l~-~~-~L~~~~nlTIFAP~D~ai~~~~s~yl----------s~-lR------------LP 201 (321)
.+++|+. ..|+.+.-+++-. +. .|....+.|||||+|+||.+-+...+ .. ++ +.
T Consensus 4 i~~~l~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~l~ 83 (132)
T 2vxp_A 4 VMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGGIG 83 (132)
T ss_dssp HHHHHTTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTTCS
T ss_pred HHHHHHcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhhcc
Confidence 4566665 6788888888742 22 25566789999999999977533211 11 11 55
Q ss_pred CCcccccccCCCeEEEEecCCcccceEEccEEeecCCceeCCeEEEeccCCC
Q 042370 202 VGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLP 253 (321)
Q Consensus 202 ~GT~LpTLlpgq~LtVTts~~~~~~v~INgV~I~~PDif~n~~LVVHGv~~p 253 (321)
.+..++|+ .|+.|+|+..++ .+.||+.+|..+|+.-.. =|||.|++-
T Consensus 84 ~~~~~~tl-~G~~l~v~~~~~---~v~vn~a~v~~~di~a~N-GvIHvID~V 130 (132)
T 2vxp_A 84 ALVRLKSL-QGDKLEVSLKNN---VVSVNKEPVAEPDIMATN-GVVHVITNV 130 (132)
T ss_dssp SCEEEEBT-TSSEEEEEEETT---EEEESSCBEEEEEEEETT-EEEEEESSC
T ss_pred CCceEecC-CCCEEEEEEeCC---EEEEeccEEEEcceecCC-EEEEEECcE
Confidence 66788886 688999998765 589999999999986544 389999863
No 2
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=98.40 E-value=4.4e-07 Score=83.61 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=104.2
Q ss_pred HHhhHHHhhh-------ccCCCcc-----ccCCCCCCc--eEEEeecCCCCCccceEEECc----EEecCCCc-ccCCeE
Q 042370 34 FTATPLQKQA-------TSLVSDF-----NDQSSSPGR--CITVTSSKSQNDTVSEAFIGG----VEITRPDL-FNNGII 94 (321)
Q Consensus 34 ~~~~~~~~~l-------~sL~~g~-----KIpT~~pG~--cLtVts~~~~~~~~~~v~INg----V~Is~pdL-fddG~l 94 (321)
.++..|+||. ..|..+. .++|+..+. .++|+.+.+ ..++.+|| .+|..+|+ +.||
T Consensus 72 ~l~~iL~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~~~----~~~v~v~~g~~~a~v~~~di~~~NG-- 145 (324)
T 1o70_A 72 KMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGS----DTVITVEGGGVNATVIQADVAQTNG-- 145 (324)
T ss_dssp HHHHHHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGG----GCEEEEEETTEEEEEEEEEEECSSE--
T ss_pred HHHHHHHhcEeCCeecHHHHhhccCCCceEEEcCCCCceEEEEEeecCC----ceEEEEcCCceeEEEEeccccccCc--
Confidence 4567777774 2344443 677887654 334443222 15688885 88888886 5566
Q ss_pred EEecccCCCCCCCCccccccccCCCCCccCCCCCccccccccchhHHHHHHHHHHHHHHh-CChhHHHHHHhhc-hh-hh
Q 042370 95 VIHGIQGDISPLSPLSCEVQRMTWLPFLFQSSDHEHYHWIEAQPLIMSLMLRDAMLRLQN-NGFSMLSLAMKVN-CQ-EL 171 (321)
Q Consensus 95 VIhGv~gffspl~~~Sc~~~~~~s~~~P~~~s~~s~~~~~~~~~si~r~~lrdA~~~Lrs-sGy~~mAlaL~l~-~~-~L 171 (321)
|||.+++.+.|... + ..++|+. ..|+.+..+++.. +. .|
T Consensus 146 vIhvID~VL~pp~~-t-------------------------------------i~~~l~~~~~fs~~~~~l~~~gl~~~L 187 (324)
T 1o70_A 146 YVHIIDHVLGVPYT-T-------------------------------------VLGKLESDPMMSDTYKMGKFSHFNDQL 187 (324)
T ss_dssp EEEEESSCTTSCCS-C-------------------------------------HHHHHHHCGGGHHHHHHTTTTTTTGGG
T ss_pred EEEEEchhhhhchh-h-------------------------------------HHHHhhcCchHHHHHHHHHhhCHHHHh
Confidence 89999999987431 0 1112222 3455555555421 22 24
Q ss_pred c-CCCCeEEEecCcchhhcccc-----------c----cccc-cc---CCC-----------Cc------ccccccCCCe
Q 042370 172 I-TLTTMTVFALDDMSIFSSSL-----------V----YISN-VR---LPV-----------GT------TLPTLKRGQS 214 (321)
Q Consensus 172 ~-~~~nlTIFAP~D~ai~~~~s-----------~----yls~-lR---LP~-----------GT------~LpTLlpgq~ 214 (321)
. ...+.|||||+|+||.+-+. + .+.. ++ +|. +. .++||. +.
T Consensus 188 ~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~--~~ 265 (324)
T 1o70_A 188 NNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFR--DS 265 (324)
T ss_dssp GCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEEEECSS--SE
T ss_pred CCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHhcEeCCcceEcHHHHhhhccCCCeeeeeccC--Cc
Confidence 4 24579999999999976420 0 1111 11 222 11 378887 67
Q ss_pred EEEEec--CCcccceEEc----cEEeecCCceeCCeEEEeccCCCCCC
Q 042370 215 LTVTRA--GVVTGPLRIN----LVRVMVPDIMNNLKIVVYGVNLPFPY 256 (321)
Q Consensus 215 LtVTts--~~~~~~v~IN----gV~I~~PDif~n~~LVVHGv~~pFp~ 256 (321)
|+|+.. ++ .+.|| +.+|..+|+.-..- |||.|++..-+
T Consensus 266 l~v~~~~~~~---~v~v~~~~~~a~v~~~di~~~NG-vIHvID~VL~P 309 (324)
T 1o70_A 266 LSIRVEEEAG---RYVIIWNYKKINVYRPDVECTNG-IIHVIDYPLLE 309 (324)
T ss_dssp EEEEEEEETT---EEEEEETTEEEEEEEEEEEETTE-EEEEESSCSCC
T ss_pred EEEEEEecCC---EEEEEecCceeEEEEcccccCCC-eEEEeceeecC
Confidence 888753 33 47887 89999999984432 89999976644
No 3
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=98.36 E-value=3.5e-07 Score=75.26 Aligned_cols=99 Identities=25% Similarity=0.246 Sum_probs=69.0
Q ss_pred HHHHH-hCChhHHHHHHhhc-hh-hhcCCCCeEEEecCcchhhccccc---cc---------cc-cc------------C
Q 042370 149 MLRLQ-NNGFSMLSLAMKVN-CQ-ELITLTTMTVFALDDMSIFSSSLV---YI---------SN-VR------------L 200 (321)
Q Consensus 149 ~~~Lr-ssGy~~mAlaL~l~-~~-~L~~~~nlTIFAP~D~ai~~~~s~---yl---------s~-lR------------L 200 (321)
+++|+ +..|+.|..+|+-. +. .|....++|||||+|+||...+.. .+ .. ++ |
T Consensus 6 ~~~l~~~~~~s~f~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~~~~l 85 (137)
T 1w7d_A 6 VETATGAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSSDL 85 (137)
T ss_dssp GGGGGSCSSSTTTTHHHHHTTTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCCTTTS
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEcHHHh
Confidence 34444 34677776666532 22 255567899999999999775321 11 11 11 7
Q ss_pred CCCcccccccCCCeEEEEecCCcccceEEccEEeecCCce-eCCeEEEeccCCCC
Q 042370 201 PVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIM-NNLKIVVYGVNLPF 254 (321)
Q Consensus 201 P~GT~LpTLlpgq~LtVTts~~~~~~v~INgV~I~~PDif-~n~~LVVHGv~~pF 254 (321)
..|..++|+ .|+.|+|+..++ +.|||.+|..+|+. .|| |||.|++-.
T Consensus 86 ~~~~~~~tl-~G~~l~v~~~~g----v~vn~a~v~~~di~~~NG--vIHvID~VL 133 (137)
T 1w7d_A 86 TEGMTAETV-EGGALTVTLEGG----PKVNGVSISQPDVDASNG--VIHVIDGVL 133 (137)
T ss_dssp CSSEEEECT-TSCEEEEECTTS----CEETTEECSBCCCBCSSS--EEEBCSSCC
T ss_pred cCCCeeecc-CCceEEEEecCC----EEEeCcEEEECCeecCCe--EEEEECeee
Confidence 778888886 588999998743 89999999999986 455 799999654
No 4
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=98.32 E-value=1.1e-06 Score=74.95 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=72.0
Q ss_pred HHHHHHHh-CChhHHHHHHh-----h-chh-hhcCCCCeEEEecCcchhhccccc---cc-------cc-cc--------
Q 042370 147 DAMLRLQN-NGFSMLSLAMK-----V-NCQ-ELITLTTMTVFALDDMSIFSSSLV---YI-------SN-VR-------- 199 (321)
Q Consensus 147 dA~~~Lrs-sGy~~mAlaL~-----l-~~~-~L~~~~nlTIFAP~D~ai~~~~s~---yl-------s~-lR-------- 199 (321)
+.+++|++ ..|+.|+.+|. . .+. .|.... +|||||+|+||.+.... .+ .. ++
T Consensus 29 ~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~g~~ 107 (163)
T 1nyo_A 29 PVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQT 107 (163)
T ss_dssp CHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESCC
T ss_pred CHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceECCEE
Confidence 35666765 56999999998 2 222 365555 99999999999775321 11 11 11
Q ss_pred ----CCCCcccccccCCCeEEEEecCCcccceEEccEEeecCCceeCCeEEEeccCCCC
Q 042370 200 ----LPVGTTLPTLKRGQSLTVTRAGVVTGPLRINLVRVMVPDIMNNLKIVVYGVNLPF 254 (321)
Q Consensus 200 ----LP~GT~LpTLlpgq~LtVTts~~~~~~v~INgV~I~~PDif~n~~LVVHGv~~pF 254 (321)
|. | .++|+ .|+.|+|+..++ .+.||+.+|..+|+.- ..-|||.|++-.
T Consensus 108 ~~~~l~-g-~~~Tl-~G~~l~v~~~~~---~v~vn~a~V~~~di~a-~NGvIHvID~VL 159 (163)
T 1nyo_A 108 SPANVV-G-TRQTL-QGASVTVTGQGN---SLKVGNADVVCGGVST-ANATVYMIDSVL 159 (163)
T ss_dssp CTTTSC-E-EEECT-TSSEEEEEECSS---CEEETTEECSSBCCCC-SSEEEBCBSSCC
T ss_pred cHHHhC-C-ccccC-CCCEEEEEEECC---EEEEeccEEEECceEc-CCEEEEEECcEe
Confidence 44 4 67887 589999998765 5999999999999965 346999999654
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=97.36 E-value=0.00011 Score=67.54 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=64.9
Q ss_pred hCChhHHHHHHhhc---hh-hhcCCCCeEEEecCcchhhccccccc-------cc-cc------------CCCCc-----
Q 042370 154 NNGFSMLSLAMKVN---CQ-ELITLTTMTVFALDDMSIFSSSLVYI-------SN-VR------------LPVGT----- 204 (321)
Q Consensus 154 ssGy~~mAlaL~l~---~~-~L~~~~nlTIFAP~D~ai~~~~s~yl-------s~-lR------------LP~GT----- 204 (321)
+..|+.|.-+|+-. +. .|....++|||||+|+||.......+ .. ++ |..+.
T Consensus 21 ~~~~s~~~~~l~~ag~~l~~~L~~~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv~g~~~~~~l~~~~~~~~~ 100 (324)
T 1o70_A 21 NGALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLIA 100 (324)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSCCCHHHHHHHTSSSCC
T ss_pred CCcHHHHHHHHHHHhHHHHHHHcCCCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEeCCeecHHHHhhccCCCce
Confidence 45577776666543 33 36666789999999999976522211 11 11 44443
Q ss_pred ccccccCCCeEEEEecC-CcccceEEcc----EEeecCCceeCCeEEEeccCCCCCC
Q 042370 205 TLPTLKRGQSLTVTRAG-VVTGPLRINL----VRVMVPDIMNNLKIVVYGVNLPFPY 256 (321)
Q Consensus 205 ~LpTLlpgq~LtVTts~-~~~~~v~INg----V~I~~PDif~n~~LVVHGv~~pFp~ 256 (321)
.++||.....+.++-.+ +....+.+|| .+|..+|+.-+. =|||.|++...+
T Consensus 101 ~~~Tl~g~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~N-GvIhvID~VL~p 156 (324)
T 1o70_A 101 QVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTN-GYVHIIDHVLGV 156 (324)
T ss_dssp CEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSS-EEEEEESSCTTS
T ss_pred EEEcCCCCceEEEEEeecCCceEEEEcCCceeEEEEeccccccC-cEEEEEchhhhh
Confidence 78999866545554332 2233688986 889999986433 389999976644
No 6
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=96.62 E-value=0.004 Score=50.95 Aligned_cols=63 Identities=30% Similarity=0.459 Sum_probs=48.5
Q ss_pred HHhhHHHhhh-------ccCCCccccCCCCCCceEEEeecCCCCCccceEEECcEEecCCCc-ccCCeEEEecccCCCCC
Q 042370 34 FTATPLQKQA-------TSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDL-FNNGIIVIHGIQGDISP 105 (321)
Q Consensus 34 ~~~~~~~~~l-------~sL~~g~KIpT~~pG~cLtVts~~~~~~~~~~v~INgV~Is~pdL-fddG~lVIhGv~gffsp 105 (321)
.++..|+||. ..|..|.+++|+ .|..|+|+.+ + + +.|||.+|..+|+ ..|| |||.+++.+-|
T Consensus 66 ~l~~lL~yHvv~~~~~~~~l~~~~~~~tl-~G~~l~v~~~-~-----g-v~vn~a~v~~~di~~~NG--vIHvID~VL~P 135 (137)
T 1w7d_A 66 KLTEILTYHVVPGEVMSSDLTEGMTAETV-EGGALTVTLE-G-----G-PKVNGVSISQPDVDASNG--VIHVIDGVLMP 135 (137)
T ss_dssp HHHHHHHHHEEESCCCTTTSCSSEEEECT-TSCEEEEECT-T-----S-CEETTEECSBCCCBCSSS--EEEBCSSCCSS
T ss_pred HHHHHHHhhEeCcEEcHHHhcCCCeeecc-CCceEEEEec-C-----C-EEEeCcEEEECCeecCCe--EEEEECeeeCC
Confidence 3456677774 356667777765 6888988765 3 5 8999999999997 4777 79999999887
Q ss_pred C
Q 042370 106 L 106 (321)
Q Consensus 106 l 106 (321)
.
T Consensus 136 ~ 136 (137)
T 1w7d_A 136 G 136 (137)
T ss_dssp C
T ss_pred C
Confidence 5
No 7
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=94.92 E-value=0.015 Score=47.29 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=44.8
Q ss_pred HHhhHHHhhh-------ccCCCccccCCCCCCceEEEeecCCCCCccceEEECcEEecCCCc-ccCCeEEEecccCCC
Q 042370 34 FTATPLQKQA-------TSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDL-FNNGIIVIHGIQGDI 103 (321)
Q Consensus 34 ~~~~~~~~~l-------~sL~~g~KIpT~~pG~cLtVts~~~~~~~~~~v~INgV~Is~pdL-fddG~lVIhGv~gff 103 (321)
-++..|+||. ..|..+.+++|+ .|..|+|+.+. +.++|||.+|..+|+ ..|| |||.+++.+
T Consensus 63 ~l~~iL~yHvv~~~~~~~~l~~~~~~~tl-~G~~l~v~~~~------~~v~vn~a~v~~~di~a~NG--vIHvID~VL 131 (132)
T 2vxp_A 63 ELANILKYHIGDEILVSGGIGALVRLKSL-QGDKLEVSLKN------NVVSVNKEPVAEPDIMATNG--VVHVITNVL 131 (132)
T ss_dssp HHHHHHHHSBBSSCCCSTTCSSCEEEEBT-TSSEEEEEEET------TEEEESSCBEEEEEEEETTE--EEEEESSCC
T ss_pred HHHHHHHhcCcCceeehhhccCCceEecC-CCCEEEEEEeC------CEEEEeccEEEEcceecCCE--EEEEECcEe
Confidence 3456788887 234455566665 68888887653 459999999999997 4666 899999864
No 8
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=94.70 E-value=0.062 Score=45.51 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=45.8
Q ss_pred HhhHHHhhh-------ccCCCccccCCCCCCceEEEeecCCCCCccceEEECcEEecCCCcccCCeEEEecccCCCCCC
Q 042370 35 TATPLQKQA-------TSLVSDFNDQSSSPGRCITVTSSKSQNDTVSEAFIGGVEITRPDLFNNGIIVIHGIQGDISPL 106 (321)
Q Consensus 35 ~~~~~~~~l-------~sL~~g~KIpT~~pG~cLtVts~~~~~~~~~~v~INgV~Is~pdLfddG~lVIhGv~gffspl 106 (321)
++..|+||. ..|. | +++|+ .|..|+|+.+.+ +++||+.+|..+|+.- ..-|||.|++.+-|.
T Consensus 94 L~~iL~yHvv~g~~~~~~l~-g-~~~Tl-~G~~l~v~~~~~------~v~vn~a~V~~~di~a-~NGvIHvID~VL~P~ 162 (163)
T 1nyo_A 94 LTSILTYHVVAGQTSPANVV-G-TRQTL-QGASVTVTGQGN------SLKVGNADVVCGGVST-ANATVYMIDSVLMPP 162 (163)
T ss_dssp HHHHHHHTEEESCCCTTTSC-E-EEECT-TSSEEEEEECSS------CEEETTEECSSBCCCC-SSEEEBCBSSCCCCC
T ss_pred HHHHHHhceECCEEcHHHhC-C-ccccC-CCCEEEEEEECC------EEEEeccEEEECceEc-CCEEEEEECcEeCCC
Confidence 455677773 2344 3 56776 588999887643 5999999999999853 334899999998875
No 9
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=64.66 E-value=5.8 Score=34.54 Aligned_cols=47 Identities=19% Similarity=0.425 Sum_probs=32.7
Q ss_pred CCCCCceEEEeecCCCC---Cc-----cceEEECcEEecCCCcccCCeEEEeccc
Q 042370 54 SSSPGRCITVTSSKSQN---DT-----VSEAFIGGVEITRPDLFNNGIIVIHGIQ 100 (321)
Q Consensus 54 T~~pG~cLtVts~~~~~---~~-----~~~v~INgV~Is~pdLfddG~lVIhGv~ 100 (321)
..++-||...-...+.. ++ ...++|||+.|+.|=....|..++.|-.
T Consensus 112 ~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VNG~~I~~~~~L~~GDrI~lG~~ 166 (184)
T 4egx_A 112 FIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTEPSILRSGNRIIMGKS 166 (184)
T ss_dssp TCCSEEEEEEEECCSSCSCEEEEEECTTCCEEETTEECCSCEECCTTCEEEETTT
T ss_pred ccccccEEEEEcCCCCceEEEEEeeCCCCeEEEcCEEccccEEcCCCCEEEECCC
Confidence 45688996532221111 11 3579999999999988889999999944
No 10
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=39.08 E-value=41 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.414 Sum_probs=31.4
Q ss_pred CCCCCCceEEEeecCCCC---C-----ccceEEECcEEecCCCcccCCeEEEecc
Q 042370 53 QSSSPGRCITVTSSKSQN---D-----TVSEAFIGGVEITRPDLFNNGIIVIHGI 99 (321)
Q Consensus 53 pT~~pG~cLtVts~~~~~---~-----~~~~v~INgV~Is~pdLfddG~lVIhGv 99 (321)
|+.+.-||.......+.. . ....++|||.+|+.+-...+|-.+..|-
T Consensus 81 ~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~i~~~~~L~~GD~I~~G~ 135 (154)
T 4ejq_A 81 HFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTEPSILRSGNRIIMGK 135 (154)
T ss_dssp TTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEECCSCEECCTTCEEEETT
T ss_pred CCcccccEEEEEecCCCceeEEEEecCCCCceEECCEEcCCceECCCCCEEEECC
Confidence 577788997643322211 0 1246999999999887677777777784
No 11
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=22.76 E-value=76 Score=25.83 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCCCCceEEEeecCCCC-C---ccceEEECcEEecCCCcccCCeEEEeccc
Q 042370 54 SSSPGRCITVTSSKSQN-D---TVSEAFIGGVEITRPDLFNNGIIVIHGIQ 100 (321)
Q Consensus 54 T~~pG~cLtVts~~~~~-~---~~~~v~INgV~Is~pdLfddG~lVIhGv~ 100 (321)
..++-||.......+.. . ....++|||.+|+.|-...+|-.+..|-.
T Consensus 66 ~Vs~~Ha~I~~~~~g~~~l~dl~~ngt~VNG~~V~~~~~L~~GD~I~lG~~ 116 (124)
T 3fm8_A 66 GILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNN 116 (124)
T ss_dssp TCCSSCEEEEECTTSCEEEEECTTCCEEETTEECCSCEEECTTCEEEETTT
T ss_pred CeecceEEEEECCCCeEEEEECCCCCEEECCEEcCCcEECCCCCEEEECCC
Confidence 56677887754322111 0 02579999999999877778877777744
Done!