Query 042372
Match_columns 402
No_of_seqs 450 out of 1440
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 05:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00887 2A0109 phosphate:H+ 100.0 1.6E-34 3.5E-39 275.6 28.0 357 2-376 133-501 (502)
2 KOG0569 Permease of the major 100.0 2.5E-34 5.4E-39 262.1 24.3 328 3-380 135-471 (485)
3 KOG0252 Inorganic phosphate tr 100.0 4.5E-33 9.7E-38 244.2 18.6 347 1-378 161-512 (538)
4 TIGR01299 synapt_SV2 synaptic 100.0 2.5E-29 5.3E-34 243.9 26.4 334 2-371 273-741 (742)
5 PRK10642 proline/glycine betai 100.0 3.9E-27 8.4E-32 224.1 26.6 303 1-372 135-438 (490)
6 KOG0253 Synaptic vesicle trans 100.0 1.9E-26 4E-31 197.0 26.5 315 2-371 183-527 (528)
7 PRK10077 xylE D-xylose transpo 100.0 6E-27 1.3E-31 223.0 23.3 320 2-377 138-471 (479)
8 KOG0254 Predicted transporter 99.9 3E-26 6.6E-31 218.8 22.2 325 4-378 162-498 (513)
9 PF00083 Sugar_tr: Sugar (and 99.9 1.2E-31 2.7E-36 253.2 -15.9 325 2-377 120-450 (451)
10 TIGR00898 2A0119 cation transp 99.9 6.2E-26 1.3E-30 217.4 23.2 299 2-373 198-504 (505)
11 TIGR00879 SP MFS transporter, 99.9 5.4E-25 1.2E-29 209.5 24.6 320 3-372 146-479 (481)
12 PRK09952 shikimate transporter 99.9 1.1E-24 2.4E-29 204.3 24.1 293 1-367 142-436 (438)
13 COG2271 UhpC Sugar phosphate p 99.9 1.3E-24 2.8E-29 190.3 15.5 291 2-363 135-433 (448)
14 PRK10406 alpha-ketoglutarate t 99.9 1.3E-22 2.8E-27 190.3 24.4 287 1-370 141-429 (432)
15 PRK11663 regulatory protein Uh 99.9 2.5E-22 5.3E-27 188.4 23.8 294 2-367 129-428 (434)
16 PRK11551 putative 3-hydroxyphe 99.9 3.9E-22 8.5E-27 185.9 23.6 273 3-363 122-395 (406)
17 TIGR00903 2A0129 major facilit 99.9 5.4E-22 1.2E-26 181.0 23.1 263 5-365 99-366 (368)
18 TIGR02332 HpaX 4-hydroxyphenyl 99.9 9.3E-22 2E-26 183.1 23.5 292 2-353 114-410 (412)
19 PRK12307 putative sialic acid 99.9 3.1E-21 6.8E-26 181.0 23.9 265 2-344 124-388 (426)
20 PRK15075 citrate-proton sympor 99.9 4.2E-21 9.1E-26 180.2 24.2 259 2-338 135-395 (434)
21 PRK10489 enterobactin exporter 99.9 2.7E-21 5.9E-26 180.7 22.4 282 4-377 130-413 (417)
22 PRK09556 uhpT sugar phosphate 99.9 8.3E-22 1.8E-26 186.6 18.4 294 2-363 140-448 (467)
23 PRK11273 glpT sn-glycerol-3-ph 99.9 6.3E-21 1.4E-25 179.8 23.9 289 3-363 139-434 (452)
24 TIGR00893 2A0114 d-galactonate 99.9 7.3E-21 1.6E-25 176.5 22.1 293 2-361 100-396 (399)
25 TIGR00895 2A0115 benzoate tran 99.9 1E-20 2.2E-25 175.7 22.2 274 2-334 123-397 (398)
26 TIGR00891 2A0112 putative sial 99.9 1.3E-20 2.8E-25 175.5 22.6 282 2-348 118-400 (405)
27 PRK03893 putative sialic acid 99.9 1.7E-20 3.6E-25 179.6 23.3 291 3-353 127-442 (496)
28 TIGR00894 2A0114euk Na(+)-depe 99.9 3.2E-20 6.9E-25 176.0 23.6 290 2-364 149-450 (465)
29 COG2814 AraJ Arabinose efflux 99.9 5.9E-20 1.3E-24 163.3 23.1 265 2-363 119-385 (394)
30 PRK03545 putative arabinose tr 99.9 7.5E-20 1.6E-24 169.5 24.7 262 3-363 116-379 (390)
31 TIGR00883 2A0106 metabolite-pr 99.9 3E-20 6.6E-25 172.3 21.4 275 2-353 114-390 (394)
32 KOG0255 Synaptic vesicle trans 99.9 7.7E-20 1.7E-24 175.7 22.9 304 3-377 190-506 (521)
33 TIGR00712 glpT glycerol-3-phos 99.9 8.7E-20 1.9E-24 171.5 21.2 297 3-367 137-437 (438)
34 PRK11010 ampG muropeptide tran 99.9 2.3E-19 5.1E-24 170.2 24.3 276 4-366 127-405 (491)
35 KOG2532 Permease of the major 99.9 4.3E-20 9.4E-25 171.1 18.6 289 2-363 146-446 (466)
36 PRK15011 sugar efflux transpor 99.8 2.7E-19 5.8E-24 165.8 21.4 266 3-366 124-393 (393)
37 PRK05122 major facilitator sup 99.8 6.2E-19 1.3E-23 164.0 23.9 265 3-370 131-395 (399)
38 TIGR00892 2A0113 monocarboxyla 99.8 8.8E-20 1.9E-24 171.9 17.9 285 4-360 128-417 (455)
39 PRK09705 cynX putative cyanate 99.8 1.2E-18 2.5E-23 161.5 24.6 270 3-371 116-389 (393)
40 TIGR00890 2A0111 Oxalate/Forma 99.8 4.7E-19 1E-23 163.3 21.6 264 4-357 111-375 (377)
41 PLN00028 nitrate transmembrane 99.8 6.6E-19 1.4E-23 166.8 22.7 281 5-364 144-433 (476)
42 PRK03699 putative transporter; 99.8 4.8E-19 1E-23 164.2 20.4 270 2-367 113-383 (394)
43 TIGR00899 2A0120 sugar efflux 99.8 8.1E-19 1.8E-23 161.8 21.8 265 3-364 106-374 (375)
44 COG2223 NarK Nitrate/nitrite t 99.8 1.3E-18 2.9E-23 153.0 20.4 274 2-363 122-400 (417)
45 cd06174 MFS The Major Facilita 99.8 3.4E-18 7.3E-23 155.9 22.7 245 2-363 105-351 (352)
46 PRK09874 drug efflux system pr 99.8 2.6E-18 5.6E-23 160.3 21.7 272 3-363 125-397 (408)
47 TIGR00900 2A0121 H+ Antiporter 99.8 4.7E-18 1E-22 156.0 21.7 250 3-338 111-364 (365)
48 PRK12382 putative transporter; 99.8 5.6E-18 1.2E-22 157.2 22.3 258 3-363 131-388 (392)
49 KOG2533 Permease of the major 99.8 3.3E-19 7.2E-24 165.6 13.2 195 2-241 152-354 (495)
50 TIGR00897 2A0118 polyol permea 99.8 1.4E-17 3E-22 154.9 24.0 273 4-363 125-400 (402)
51 PRK11902 ampG muropeptide tran 99.8 3.3E-17 7.2E-22 152.3 25.8 273 3-365 113-391 (402)
52 TIGR00881 2A0104 phosphoglycer 99.8 1.7E-18 3.8E-23 159.6 16.9 274 2-345 101-378 (379)
53 PRK10504 putative transporter; 99.8 1.4E-17 3.1E-22 158.3 23.6 269 3-338 117-416 (471)
54 PRK10091 MFS transport protein 99.8 2.7E-17 5.9E-22 151.9 24.6 262 4-363 111-375 (382)
55 PRK10213 nepI ribonucleoside t 99.8 5.6E-17 1.2E-21 150.1 24.8 256 3-357 127-384 (394)
56 TIGR00711 efflux_EmrB drug res 99.8 2.9E-17 6.4E-22 156.8 19.3 272 3-337 109-410 (485)
57 TIGR00901 2A0125 AmpG-related 99.8 2.3E-17 5.1E-22 151.0 17.5 253 3-321 102-355 (356)
58 TIGR00710 efflux_Bcr_CflA drug 99.8 2.5E-16 5.4E-21 145.8 24.3 246 3-335 112-359 (385)
59 PRK15034 nitrate/nitrite trans 99.8 2.4E-16 5.3E-21 145.3 23.7 282 2-363 145-453 (462)
60 PRK14995 methyl viologen resis 99.8 1.1E-16 2.4E-21 152.7 21.2 274 5-337 115-413 (495)
61 PRK10473 multidrug efflux syst 99.8 4.9E-16 1.1E-20 144.2 24.9 250 3-351 110-361 (392)
62 TIGR00902 2A0127 phenyl propri 99.8 1.8E-16 3.9E-21 146.4 21.8 263 3-361 113-376 (382)
63 PRK15402 multidrug efflux syst 99.7 6.6E-16 1.4E-20 144.0 25.2 250 3-338 120-371 (406)
64 PRK11195 lysophospholipid tran 99.7 7.7E-16 1.7E-20 142.5 25.1 270 2-361 106-377 (393)
65 TIGR02718 sider_RhtX_FptX side 99.7 4.8E-16 1E-20 144.0 22.5 265 8-360 121-387 (390)
66 PRK11102 bicyclomycin/multidru 99.7 9.4E-16 2E-20 141.5 24.3 243 3-331 98-343 (377)
67 TIGR00792 gph sugar (Glycoside 99.7 2.6E-16 5.7E-21 148.2 20.4 251 6-338 121-381 (437)
68 PF07690 MFS_1: Major Facilita 99.7 3.5E-17 7.5E-22 149.5 13.3 246 3-328 104-352 (352)
69 PRK11043 putative transporter; 99.7 1.8E-15 3.9E-20 140.8 25.0 243 5-337 115-357 (401)
70 PRK06814 acylglycerophosphoeth 99.7 3.5E-16 7.5E-21 164.1 20.9 286 2-354 126-412 (1140)
71 PRK03633 putative MFS family t 99.7 2.4E-15 5.3E-20 138.9 23.9 153 171-362 218-370 (381)
72 PRK08633 2-acyl-glycerophospho 99.7 6.2E-16 1.3E-20 162.7 22.2 279 2-356 121-402 (1146)
73 TIGR00889 2A0110 nucleoside tr 99.7 7.7E-16 1.7E-20 143.5 20.2 176 171-368 226-407 (418)
74 PRK11128 putative 3-phenylprop 99.7 8.7E-16 1.9E-20 141.9 20.3 262 3-360 113-375 (382)
75 PRK09528 lacY galactoside perm 99.7 3.6E-16 7.8E-21 146.3 17.5 260 16-363 137-402 (420)
76 PRK11646 multidrug resistance 99.7 1.3E-15 2.7E-20 141.4 20.8 262 3-359 118-383 (400)
77 PRK10054 putative transporter; 99.7 1.9E-15 4E-20 140.1 21.3 262 3-360 115-380 (395)
78 PF05977 MFS_3: Transmembrane 99.7 3.1E-15 6.7E-20 141.3 23.1 271 3-363 122-393 (524)
79 TIGR01272 gluP glucose/galacto 99.7 4.1E-15 8.8E-20 132.6 22.4 267 3-349 29-300 (310)
80 PF11700 ATG22: Vacuole efflux 99.7 1.4E-14 2.9E-19 135.5 24.8 295 6-370 148-474 (477)
81 TIGR00896 CynX cyanate transpo 99.7 6.6E-15 1.4E-19 134.7 20.6 242 4-339 107-350 (355)
82 KOG2504 Monocarboxylate transp 99.7 6.3E-16 1.4E-20 145.3 13.8 299 5-368 156-481 (509)
83 TIGR00886 2A0108 nitrite extru 99.7 7.1E-15 1.5E-19 135.1 18.3 254 3-323 109-365 (366)
84 PRK15403 multidrug efflux syst 99.7 4.5E-14 9.8E-19 131.5 23.8 258 5-354 125-387 (413)
85 KOG1330 Sugar transporter/spin 99.6 1.2E-15 2.6E-20 135.8 10.6 262 2-339 139-414 (493)
86 TIGR00882 2A0105 oligosacchari 99.6 1.4E-14 3.1E-19 134.5 17.3 257 17-361 130-392 (396)
87 COG2807 CynX Cyanate permease 99.6 1.1E-13 2.5E-18 119.6 19.9 263 5-363 120-384 (395)
88 PRK11652 emrD multidrug resist 99.6 2.5E-13 5.5E-18 126.1 23.8 242 5-337 117-360 (394)
89 PRK10133 L-fucose transporter; 99.6 3.6E-13 7.8E-18 126.3 23.0 281 3-358 136-427 (438)
90 TIGR00895 2A0115 benzoate tran 99.6 2.9E-14 6.3E-19 132.4 15.1 179 154-368 18-197 (398)
91 TIGR00885 fucP L-fucose:H+ sym 99.6 3.1E-13 6.8E-18 125.5 21.9 279 3-352 113-400 (410)
92 COG2211 MelB Na+/melibiose sym 99.6 6.7E-13 1.5E-17 121.0 23.3 254 7-339 135-398 (467)
93 TIGR01301 GPH_sucrose GPH fami 99.6 4.2E-13 9E-18 124.9 22.5 330 5-368 135-476 (477)
94 TIGR02332 HpaX 4-hydroxyphenyl 99.6 6.1E-14 1.3E-18 130.7 17.0 183 152-368 7-194 (412)
95 PRK10429 melibiose:sodium symp 99.6 2.2E-13 4.7E-18 129.3 20.9 258 6-338 128-394 (473)
96 PRK11663 regulatory protein Uh 99.6 1.3E-13 2.9E-18 129.4 18.4 177 154-366 24-201 (434)
97 COG2271 UhpC Sugar phosphate p 99.6 4.3E-14 9.3E-19 124.7 13.6 181 147-363 23-205 (448)
98 TIGR00891 2A0112 putative sial 99.6 6.3E-14 1.4E-18 130.6 15.3 183 151-367 10-192 (405)
99 TIGR01299 synapt_SV2 synaptic 99.6 8E-14 1.7E-18 136.3 16.4 181 154-368 168-359 (742)
100 PF06609 TRI12: Fungal trichot 99.5 2.1E-12 4.4E-17 122.1 23.3 311 6-369 152-559 (599)
101 TIGR00805 oat sodium-independe 99.5 9E-13 1.9E-17 128.4 21.1 217 2-246 190-415 (633)
102 PRK10213 nepI ribonucleoside t 99.5 2.9E-13 6.2E-18 125.4 16.8 178 153-366 20-198 (394)
103 TIGR00710 efflux_Bcr_CflA drug 99.5 2.1E-13 4.5E-18 126.2 15.5 173 161-369 13-186 (385)
104 TIGR00893 2A0114 d-galactonate 99.5 1.5E-13 3.2E-18 127.4 13.3 164 169-368 10-174 (399)
105 PRK03545 putative arabinose tr 99.5 3.5E-13 7.5E-18 125.0 15.6 175 156-366 12-187 (390)
106 PF13347 MFS_2: MFS/sugar tran 99.5 2.1E-12 4.6E-17 121.2 20.8 250 6-338 125-385 (428)
107 PRK15462 dipeptide/tripeptide 99.5 5.7E-13 1.2E-17 124.5 16.4 174 153-361 9-186 (493)
108 PRK11551 putative 3-hydroxyphe 99.5 3.7E-13 8E-18 125.5 15.3 182 150-367 12-194 (406)
109 PRK10054 putative transporter; 99.5 5.6E-13 1.2E-17 123.5 16.3 176 155-367 9-186 (395)
110 PRK09669 putative symporter Ya 99.5 3E-12 6.6E-17 120.7 21.3 249 7-338 132-389 (444)
111 COG2814 AraJ Arabinose efflux 99.5 8.4E-13 1.8E-17 118.0 15.6 176 153-364 13-189 (394)
112 TIGR00924 yjdL_sub1_fam amino 99.5 1E-12 2.2E-17 124.4 16.7 176 153-364 10-192 (475)
113 TIGR00881 2A0104 phosphoglycer 99.5 2.2E-13 4.8E-18 125.6 11.9 167 165-367 7-175 (379)
114 PRK12307 putative sialic acid 99.5 6.6E-13 1.4E-17 124.7 15.3 163 154-352 19-181 (426)
115 PRK10207 dipeptide/tripeptide 99.5 3.5E-12 7.5E-17 120.9 20.0 144 207-362 316-474 (489)
116 PRK14995 methyl viologen resis 99.5 1E-12 2.2E-17 125.5 16.5 179 153-367 6-186 (495)
117 TIGR00711 efflux_EmrB drug res 99.5 4.4E-13 9.4E-18 128.1 13.9 178 155-368 4-182 (485)
118 TIGR00887 2A0109 phosphate:H+ 99.5 1.2E-12 2.5E-17 125.4 16.8 149 204-368 60-229 (502)
119 PRK11273 glpT sn-glycerol-3-ph 99.5 3E-12 6.4E-17 121.0 19.1 164 171-367 47-212 (452)
120 KOG2615 Permease of the major 99.5 4.2E-13 9.1E-18 116.5 11.9 283 3-355 139-431 (451)
121 PLN00028 nitrate transmembrane 99.5 1.6E-12 3.5E-17 123.4 17.2 176 154-364 37-219 (476)
122 PRK10207 dipeptide/tripeptide 99.5 1.9E-12 4E-17 122.7 17.1 178 151-363 12-193 (489)
123 PRK03699 putative transporter; 99.5 3.1E-12 6.7E-17 118.7 18.4 174 153-361 7-180 (394)
124 PRK10473 multidrug efflux syst 99.5 1.7E-12 3.6E-17 120.6 16.4 176 157-368 7-183 (392)
125 PRK10504 putative transporter; 99.5 1.5E-12 3.2E-17 123.9 16.4 177 154-366 11-188 (471)
126 PRK11462 putative transporter; 99.5 1.2E-11 2.6E-16 116.7 22.3 248 7-338 132-388 (460)
127 TIGR00924 yjdL_sub1_fam amino 99.5 8E-12 1.7E-16 118.3 21.0 307 3-363 121-467 (475)
128 PF07690 MFS_1: Major Facilita 99.5 7.3E-13 1.6E-17 120.9 13.6 168 163-366 6-175 (352)
129 TIGR00900 2A0121 H+ Antiporter 99.5 1.2E-12 2.5E-17 120.1 14.7 164 169-363 15-178 (365)
130 PRK03893 putative sialic acid 99.5 1.7E-12 3.7E-17 124.4 16.3 179 152-366 19-197 (496)
131 KOG3626 Organic anion transpor 99.5 3.4E-11 7.3E-16 114.8 23.8 307 2-337 255-649 (735)
132 TIGR00712 glpT glycerol-3-phos 99.4 2.7E-12 5.8E-17 120.8 16.2 182 154-367 28-210 (438)
133 PRK15402 multidrug efflux syst 99.4 2.9E-12 6.2E-17 119.5 16.1 164 169-368 29-193 (406)
134 TIGR00788 fbt folate/biopterin 99.4 1E-12 2.2E-17 124.1 12.8 297 4-365 140-447 (468)
135 PRK10091 MFS transport protein 99.4 2.6E-12 5.6E-17 118.8 14.6 178 154-367 4-182 (382)
136 TIGR00879 SP MFS transporter, 99.4 1.3E-12 2.7E-17 124.5 12.2 143 204-367 75-220 (481)
137 PRK10406 alpha-ketoglutarate t 99.4 7.1E-12 1.5E-16 117.7 16.4 188 155-367 24-222 (432)
138 PRK11652 emrD multidrug resist 99.4 5.8E-12 1.3E-16 117.0 15.6 179 154-368 9-188 (394)
139 PRK15403 multidrug efflux syst 99.4 7.9E-12 1.7E-16 116.5 15.9 157 176-368 39-196 (413)
140 TIGR00903 2A0129 major facilit 99.4 4.8E-12 1E-16 115.7 14.0 164 168-368 6-170 (368)
141 PRK05122 major facilitator sup 99.4 9.4E-12 2E-16 115.8 16.1 175 155-357 17-192 (399)
142 PRK10077 xylE D-xylose transpo 99.4 3.5E-12 7.7E-17 121.6 13.4 151 205-367 60-218 (479)
143 TIGR00894 2A0114euk Na(+)-depe 99.4 8.3E-12 1.8E-16 118.6 15.6 137 205-363 81-218 (465)
144 PRK11102 bicyclomycin/multidru 99.4 6.2E-12 1.3E-16 116.1 13.7 160 172-367 10-170 (377)
145 PRK09874 drug efflux system pr 99.4 2.2E-11 4.9E-16 113.6 17.5 176 159-366 20-196 (408)
146 PRK11646 multidrug resistance 99.4 1.4E-11 3E-16 114.4 15.8 168 162-366 19-188 (400)
147 PRK09556 uhpT sugar phosphate 99.4 5.5E-12 1.2E-16 119.7 13.2 179 155-362 31-210 (467)
148 PRK12382 putative transporter; 99.4 1E-11 2.2E-16 115.2 14.8 167 158-352 20-187 (392)
149 PRK09584 tppB putative tripept 99.4 6.8E-11 1.5E-15 112.7 20.6 133 217-362 337-477 (500)
150 KOG1330 Sugar transporter/spin 99.4 3.8E-13 8.2E-18 120.0 4.5 185 154-373 34-219 (493)
151 TIGR00886 2A0108 nitrite extru 99.4 2E-11 4.3E-16 112.2 16.0 177 156-366 4-191 (366)
152 PRK09584 tppB putative tripept 99.4 3E-11 6.5E-16 115.1 17.2 172 153-359 21-196 (500)
153 COG2270 Permeases of the major 99.4 3.6E-11 7.7E-16 106.7 16.2 293 7-367 138-432 (438)
154 PRK10642 proline/glycine betai 99.4 2.8E-11 6E-16 115.6 16.8 190 154-367 17-216 (490)
155 PRK11195 lysophospholipid tran 99.4 1.8E-11 4E-16 113.3 14.9 154 174-367 24-177 (393)
156 TIGR00892 2A0113 monocarboxyla 99.3 1.5E-11 3.2E-16 116.2 14.3 158 170-363 36-193 (455)
157 PRK10489 enterobactin exporter 99.3 1.7E-11 3.7E-16 114.7 14.3 172 165-367 29-200 (417)
158 TIGR00890 2A0111 Oxalate/Forma 99.3 6.7E-12 1.4E-16 115.6 11.3 159 168-363 18-176 (377)
159 PRK11043 putative transporter; 99.3 3.8E-11 8.3E-16 111.8 16.4 155 176-366 29-183 (401)
160 PRK09848 glucuronide transport 99.3 1.9E-10 4.1E-15 108.7 21.1 151 156-338 231-389 (448)
161 cd06174 MFS The Major Facilita 99.3 1.7E-11 3.7E-16 111.7 13.5 168 160-363 6-173 (352)
162 TIGR00885 fucP L-fucose:H+ sym 99.3 6.1E-11 1.3E-15 110.3 16.8 176 155-361 5-204 (410)
163 PRK15075 citrate-proton sympor 99.3 5.3E-11 1.2E-15 111.9 16.3 176 154-351 16-199 (434)
164 COG0738 FucP Fucose permease [ 99.3 2.6E-10 5.7E-15 100.6 19.2 273 4-355 124-400 (422)
165 PF03825 Nuc_H_symport: Nucleo 99.3 1.6E-10 3.5E-15 106.2 18.7 168 168-366 222-398 (400)
166 PF01306 LacY_symp: LacY proto 99.3 9.1E-11 2E-15 106.2 16.5 181 155-367 222-404 (412)
167 TIGR00897 2A0118 polyol permea 99.3 5.9E-11 1.3E-15 110.5 15.5 166 155-352 15-181 (402)
168 KOG4686 Predicted sugar transp 99.3 1.9E-10 4.1E-15 96.3 16.5 174 154-364 265-443 (459)
169 PRK09952 shikimate transporter 99.3 8.9E-11 1.9E-15 110.4 16.7 148 206-367 70-223 (438)
170 TIGR00898 2A0119 cation transp 99.3 9.2E-12 2E-16 119.6 10.0 155 174-367 110-267 (505)
171 KOG2563 Permease of the major 99.3 9.5E-11 2.1E-15 104.6 14.9 283 7-365 163-451 (480)
172 COG2223 NarK Nitrate/nitrite t 99.3 2.3E-10 4.9E-15 101.6 16.3 175 154-363 15-192 (417)
173 KOG3764 Vesicular amine transp 99.3 1E-11 2.2E-16 108.8 7.5 268 4-363 179-453 (464)
174 PRK03633 putative MFS family t 99.3 1.4E-10 3E-15 107.2 15.6 150 154-337 7-156 (381)
175 TIGR00899 2A0120 sugar efflux 99.3 1.4E-10 3E-15 106.9 15.5 169 163-367 7-180 (375)
176 PRK11010 ampG muropeptide tran 99.3 1.8E-10 3.8E-15 109.8 16.4 179 154-367 13-198 (491)
177 PRK09705 cynX putative cyanate 99.3 1.2E-10 2.7E-15 107.9 14.7 154 169-358 25-178 (393)
178 PRK15034 nitrate/nitrite trans 99.3 2.5E-10 5.4E-15 105.8 16.5 180 154-363 35-231 (462)
179 KOG2615 Permease of the major 99.2 3.3E-11 7.1E-16 105.0 9.0 113 201-336 69-181 (451)
180 TIGR00880 2_A_01_02 Multidrug 99.2 6.3E-11 1.4E-15 92.6 9.8 133 209-365 7-140 (141)
181 PRK11902 ampG muropeptide tran 99.2 3.1E-10 6.7E-15 105.7 15.7 176 159-368 5-186 (402)
182 TIGR00806 rfc RFC reduced fola 99.2 4.4E-10 9.4E-15 102.6 15.9 158 172-367 45-206 (511)
183 KOG0569 Permease of the major 99.2 9.1E-11 2E-15 108.3 11.3 145 205-369 65-210 (485)
184 PRK10133 L-fucose transporter; 99.2 5.8E-10 1.3E-14 104.7 16.8 151 154-335 27-177 (438)
185 TIGR00805 oat sodium-independe 99.2 1E-10 2.2E-15 114.1 12.1 184 172-367 52-284 (633)
186 KOG0255 Synaptic vesicle trans 99.2 1.3E-10 2.9E-15 111.9 12.0 137 205-368 123-259 (521)
187 PRK09528 lacY galactoside perm 99.2 4.4E-10 9.5E-15 105.3 14.4 175 155-363 12-190 (420)
188 PTZ00207 hypothetical protein; 99.2 1.8E-09 3.9E-14 103.0 18.0 182 154-368 354-557 (591)
189 TIGR00883 2A0106 metabolite-pr 99.2 7.8E-10 1.7E-14 102.5 15.2 146 205-366 40-193 (394)
190 PTZ00207 hypothetical protein; 99.2 9.3E-10 2E-14 104.9 15.4 163 166-361 40-202 (591)
191 TIGR00901 2A0125 AmpG-related 99.1 5.9E-10 1.3E-14 102.1 13.1 160 173-367 8-182 (356)
192 KOG3764 Vesicular amine transp 99.1 1.2E-10 2.5E-15 102.2 7.8 138 202-363 108-246 (464)
193 TIGR01301 GPH_sucrose GPH fami 99.1 2.1E-09 4.5E-14 100.4 16.4 194 155-367 6-222 (477)
194 PF03209 PUCC: PUCC protein; 99.1 1.1E-08 2.4E-13 91.2 20.1 273 6-362 111-396 (403)
195 TIGR00806 rfc RFC reduced fola 99.1 1.7E-09 3.7E-14 98.8 15.2 72 4-99 134-208 (511)
196 PRK06814 acylglycerophosphoeth 99.1 2.1E-09 4.5E-14 113.4 18.0 142 205-367 57-198 (1140)
197 PRK15011 sugar efflux transpor 99.1 3.6E-09 7.8E-14 98.2 16.2 174 157-367 19-198 (393)
198 TIGR00882 2A0105 oligosacchari 99.1 1.7E-09 3.7E-14 100.5 13.9 178 155-363 4-182 (396)
199 PRK08633 2-acyl-glycerophospho 99.1 4.2E-09 9.1E-14 111.4 18.0 116 203-337 50-165 (1146)
200 PRK15462 dipeptide/tripeptide 99.1 5.9E-08 1.3E-12 91.1 22.9 64 3-89 119-184 (493)
201 KOG2532 Permease of the major 99.1 3.6E-09 7.7E-14 98.8 14.5 137 205-363 78-215 (466)
202 PF06609 TRI12: Fungal trichot 99.1 1.1E-09 2.5E-14 103.8 11.0 151 173-361 64-214 (599)
203 PF03137 OATP: Organic Anion T 99.1 2.6E-11 5.7E-16 115.3 0.0 314 2-337 159-514 (539)
204 PF05977 MFS_3: Transmembrane 99.1 3.6E-09 7.7E-14 100.5 14.4 140 205-363 50-189 (524)
205 TIGR00896 CynX cyanate transpo 99.1 2E-09 4.2E-14 98.6 12.3 148 172-355 19-166 (355)
206 PRK11128 putative 3-phenylprop 99.0 7.6E-09 1.6E-13 95.7 16.1 160 167-366 18-181 (382)
207 TIGR00902 2A0127 phenyl propri 99.0 1.4E-08 3E-13 93.9 16.5 156 161-353 12-168 (382)
208 PF00083 Sugar_tr: Sugar (and 99.0 1.6E-11 3.5E-16 116.2 -3.1 146 204-368 50-196 (451)
209 KOG2816 Predicted transporter 99.0 3.8E-08 8.3E-13 91.5 17.9 259 3-338 131-393 (463)
210 COG3104 PTR2 Dipeptide/tripept 98.9 7.1E-09 1.5E-13 94.4 10.8 178 153-364 21-206 (498)
211 TIGR02718 sider_RhtX_FptX side 98.9 4.5E-08 9.7E-13 90.8 16.5 181 155-365 3-185 (390)
212 TIGR00792 gph sugar (Glycoside 98.9 4.9E-08 1.1E-12 92.1 17.0 171 169-367 15-198 (437)
213 KOG0254 Predicted transporter 98.9 1.3E-08 2.9E-13 97.7 13.0 142 204-368 93-234 (513)
214 KOG0252 Inorganic phosphate tr 98.9 5.7E-09 1.2E-13 93.5 8.6 155 201-370 85-252 (538)
215 PF06813 Nodulin-like: Nodulin 98.9 5.3E-08 1.2E-12 82.7 12.7 168 165-364 14-182 (250)
216 COG0738 FucP Fucose permease [ 98.9 1.3E-07 2.9E-12 83.8 15.5 178 154-362 14-208 (422)
217 KOG2504 Monocarboxylate transp 98.9 2.5E-08 5.4E-13 94.3 11.8 173 155-363 48-220 (509)
218 PRK09669 putative symporter Ya 98.8 3.5E-07 7.5E-12 86.4 17.0 174 165-366 21-207 (444)
219 KOG0253 Synaptic vesicle trans 98.7 3.4E-07 7.4E-12 80.0 13.5 139 205-369 118-256 (528)
220 KOG2533 Permease of the major 98.7 5E-07 1.1E-11 84.9 15.0 142 205-368 86-232 (495)
221 PRK10429 melibiose:sodium symp 98.7 1.1E-06 2.4E-11 83.7 16.3 177 161-366 14-204 (473)
222 KOG2325 Predicted transporter/ 98.6 3.8E-07 8.1E-12 84.1 12.1 187 152-368 33-234 (488)
223 PF13347 MFS_2: MFS/sugar tran 98.6 4.6E-07 1E-11 85.2 13.1 171 168-365 16-200 (428)
224 KOG2325 Predicted transporter/ 98.6 1.7E-07 3.7E-12 86.3 8.8 308 5-359 150-470 (488)
225 TIGR00788 fbt folate/biopterin 98.6 6.5E-07 1.4E-11 84.8 12.8 176 155-367 28-212 (468)
226 PF01306 LacY_symp: LacY proto 98.5 3.3E-07 7.2E-12 83.3 8.4 174 155-363 9-187 (412)
227 TIGR00889 2A0110 nucleoside tr 98.5 1.5E-06 3.2E-11 81.4 12.8 63 174-248 23-87 (418)
228 PF03092 BT1: BT1 family; Int 98.5 4.1E-07 9E-12 85.0 8.7 151 205-367 260-416 (433)
229 PRK11462 putative transporter; 98.5 6.7E-06 1.5E-10 77.9 16.0 172 166-366 22-207 (460)
230 COG3104 PTR2 Dipeptide/tripept 98.5 3.1E-06 6.6E-11 77.6 12.9 143 205-362 329-485 (498)
231 KOG3762 Predicted transporter 98.4 1.4E-06 3E-11 80.1 9.4 134 205-362 411-545 (618)
232 PF05631 DUF791: Protein of un 98.4 2.2E-05 4.9E-10 69.3 15.8 156 179-369 60-222 (354)
233 PF03825 Nuc_H_symport: Nucleo 98.4 8.7E-06 1.9E-10 75.2 14.0 162 170-367 19-183 (400)
234 KOG2816 Predicted transporter 98.3 8.3E-06 1.8E-10 76.2 12.9 136 210-372 72-208 (463)
235 COG2211 MelB Na+/melibiose sym 98.3 6.7E-05 1.5E-09 69.3 17.3 174 161-362 20-205 (467)
236 PRK09848 glucuronide transport 98.2 5.8E-05 1.3E-09 71.5 15.8 66 166-243 21-92 (448)
237 TIGR00926 2A1704 Peptide:H+ sy 98.2 3.8E-05 8.2E-10 75.1 14.2 135 214-362 37-180 (654)
238 PF01770 Folate_carrier: Reduc 98.2 8.2E-05 1.8E-09 67.6 15.0 72 6-98 115-186 (412)
239 KOG3098 Uncharacterized conser 98.2 0.0002 4.4E-09 66.2 17.5 128 202-334 281-411 (461)
240 KOG2563 Permease of the major 98.1 4.1E-05 8.9E-10 69.2 11.2 118 204-338 83-203 (480)
241 COG2807 CynX Cyanate permease 98.1 9.5E-05 2.1E-09 65.1 12.8 159 167-362 26-184 (395)
242 PF06963 FPN1: Ferroportin1 (F 98.1 0.00074 1.6E-08 62.5 19.2 133 171-330 276-411 (432)
243 KOG3810 Micronutrient transpor 97.9 0.00023 5.1E-09 62.1 12.4 73 6-99 116-188 (433)
244 PF12832 MFS_1_like: MFS_1 lik 97.8 8.2E-05 1.8E-09 50.8 6.5 64 163-238 10-73 (77)
245 PF03209 PUCC: PUCC protein; 97.8 0.00061 1.3E-08 61.5 12.8 116 215-338 29-152 (403)
246 TIGR00880 2_A_01_02 Multidrug 97.8 0.00011 2.4E-09 56.8 7.2 70 3-95 70-140 (141)
247 PF03137 OATP: Organic Anion T 97.7 5.3E-06 1.2E-10 79.4 -1.0 179 176-366 26-252 (539)
248 PF03092 BT1: BT1 family; Int 97.7 0.00082 1.8E-08 63.1 13.1 153 177-365 14-177 (433)
249 KOG3626 Organic anion transpor 97.7 0.00047 1E-08 67.0 11.3 179 181-371 125-350 (735)
250 PF02487 CLN3: CLN3 protein; 97.7 0.0055 1.2E-07 55.9 17.5 43 293-335 353-395 (402)
251 PF11700 ATG22: Vacuole efflux 97.7 0.0018 3.8E-08 61.4 14.8 144 205-368 75-252 (477)
252 TIGR00769 AAA ADP/ATP carrier 97.5 0.0077 1.7E-07 56.6 16.5 119 217-335 61-189 (472)
253 PF01770 Folate_carrier: Reduc 97.5 0.0072 1.6E-07 55.3 15.6 126 219-367 60-185 (412)
254 PF07672 MFS_Mycoplasma: Mycop 97.2 0.012 2.5E-07 49.9 12.2 59 16-92 2-60 (267)
255 COG0477 ProP Permeases of the 97.0 0.02 4.4E-07 50.5 14.0 129 205-353 44-174 (338)
256 PF05978 UNC-93: Ion channel r 97.0 0.014 3E-07 46.0 11.0 103 210-335 47-149 (156)
257 PF13000 Acatn: Acetyl-coenzym 97.0 0.021 4.5E-07 53.1 13.5 43 295-337 425-467 (544)
258 TIGR00769 AAA ADP/ATP carrier 97.0 0.35 7.6E-06 45.7 25.8 40 6-45 151-190 (472)
259 COG3202 ATP/ADP translocase [E 96.9 0.062 1.4E-06 49.9 15.4 125 213-337 75-210 (509)
260 TIGR00939 2a57 Equilibrative N 96.9 0.17 3.6E-06 47.6 18.7 39 294-332 391-429 (437)
261 PF06963 FPN1: Ferroportin1 (F 96.8 0.094 2E-06 48.8 15.9 145 205-361 43-197 (432)
262 PF06779 DUF1228: Protein of u 96.7 0.011 2.5E-07 40.8 7.3 72 167-250 6-77 (85)
263 TIGR01272 gluP glucose/galacto 96.6 0.0063 1.4E-07 54.5 6.9 78 289-366 24-117 (310)
264 KOG4686 Predicted sugar transp 96.3 0.0038 8.2E-08 53.4 3.2 115 205-338 84-199 (459)
265 PF03219 TLC: TLC ATP/ADP tran 96.2 1.2 2.5E-05 42.5 22.9 40 6-45 166-205 (491)
266 KOG0637 Sucrose transporter an 96.0 0.036 7.7E-07 50.9 8.2 157 154-332 33-200 (498)
267 KOG1237 H+/oligopeptide sympor 96.0 0.44 9.5E-06 46.3 16.1 146 214-361 87-242 (571)
268 COG3202 ATP/ADP translocase [E 96.0 1.5 3.2E-05 41.2 21.1 39 7-45 171-209 (509)
269 PF01733 Nucleoside_tran: Nucl 95.9 0.0015 3.3E-08 58.3 -0.7 39 293-331 266-304 (309)
270 PF03219 TLC: TLC ATP/ADP tran 95.9 0.18 3.9E-06 47.8 12.9 121 216-336 75-205 (491)
271 PF00854 PTR2: POT family; In 95.9 0.044 9.4E-07 50.5 8.7 117 231-362 2-121 (372)
272 KOG0637 Sucrose transporter an 95.5 0.012 2.6E-07 53.8 3.2 38 5-42 163-201 (498)
273 KOG1479 Nucleoside transporter 95.4 1 2.2E-05 41.3 15.1 38 292-329 360-397 (406)
274 PF02487 CLN3: CLN3 protein; 95.2 0.21 4.6E-06 45.8 10.3 41 322-363 154-194 (402)
275 COG2270 Permeases of the major 94.8 0.41 9E-06 43.8 10.7 144 205-367 63-224 (438)
276 PF13000 Acatn: Acetyl-coenzym 94.7 0.42 9.1E-06 44.8 10.7 36 298-333 141-176 (544)
277 KOG3574 Acetyl-CoA transporter 94.6 0.34 7.3E-06 43.7 9.4 68 153-235 31-103 (510)
278 PRK03612 spermidine synthase; 94.2 1.5 3.2E-05 42.4 13.8 44 310-355 144-188 (521)
279 TIGR00926 2A1704 Peptide:H+ sy 93.9 4.2 9.2E-05 40.5 16.7 72 3-90 104-178 (654)
280 KOG3762 Predicted transporter 93.8 0.018 3.9E-07 53.9 0.1 64 168-243 26-89 (618)
281 KOG3574 Acetyl-CoA transporter 92.8 1.1 2.4E-05 40.5 9.5 44 295-338 389-432 (510)
282 PF05631 DUF791: Protein of un 92.2 8.7 0.00019 34.7 15.4 78 154-245 246-324 (354)
283 KOG1479 Nucleoside transporter 92.0 7.7 0.00017 35.7 14.1 63 155-226 20-82 (406)
284 KOG3098 Uncharacterized conser 91.4 1.6 3.5E-05 41.0 9.4 105 206-333 56-160 (461)
285 KOG4332 Predicted sugar transp 91.0 0.83 1.8E-05 39.2 6.4 25 212-236 84-108 (454)
286 TIGR00939 2a57 Equilibrative N 89.4 4.5 9.7E-05 38.1 10.7 19 346-364 178-196 (437)
287 PF06813 Nodulin-like: Nodulin 89.3 1.5 3.3E-05 37.6 6.9 67 7-97 119-185 (250)
288 PF00854 PTR2: POT family; In 87.7 0.93 2E-05 41.7 5.0 66 4-92 53-121 (372)
289 KOG2881 Predicted membrane pro 86.3 20 0.00043 30.6 12.5 29 210-238 250-278 (294)
290 KOG1237 H+/oligopeptide sympor 83.6 47 0.001 32.6 17.7 38 301-338 484-521 (571)
291 KOG4332 Predicted sugar transp 81.5 36 0.00077 29.7 16.3 99 205-318 287-387 (454)
292 COG0477 ProP Permeases of the 75.5 7.4 0.00016 33.8 6.0 63 3-86 113-177 (338)
293 PF05297 Herpes_LMP1: Herpesvi 72.9 1 2.2E-05 38.3 -0.3 21 348-368 170-190 (381)
294 KOG3880 Predicted small molecu 71.0 65 0.0014 28.8 10.0 34 300-333 367-400 (409)
295 PF07857 DUF1632: CEO family ( 69.2 59 0.0013 28.1 9.4 26 306-331 74-99 (254)
296 PF11947 DUF3464: Protein of u 68.3 10 0.00022 29.6 4.2 28 298-325 117-144 (153)
297 COG5336 Uncharacterized protei 67.2 39 0.00084 24.5 6.5 34 306-339 37-70 (116)
298 PF11151 DUF2929: Protein of u 66.9 29 0.00064 21.9 5.4 29 68-96 27-55 (57)
299 COG1288 Predicted membrane pro 66.9 66 0.0014 30.0 9.6 32 68-99 214-247 (481)
300 PF02990 EMP70: Endomembrane p 66.9 75 0.0016 30.9 10.9 25 205-229 302-326 (521)
301 PF03547 Mem_trans: Membrane t 65.1 23 0.0005 32.7 6.9 7 305-311 90-96 (385)
302 PF10183 ESSS: ESSS subunit of 62.9 20 0.00044 26.0 4.8 42 56-97 43-85 (105)
303 COG5336 Uncharacterized protei 57.4 13 0.00027 26.8 2.7 25 219-243 61-86 (116)
304 PRK10263 DNA translocase FtsK; 56.9 73 0.0016 34.4 9.1 16 213-228 65-80 (1355)
305 KOG3880 Predicted small molecu 55.3 13 0.00028 32.9 3.1 84 281-368 120-206 (409)
306 KOG3097 Predicted membrane pro 55.1 1.6E+02 0.0036 26.6 12.4 24 215-238 73-96 (390)
307 KOG2601 Iron transporter [Inor 51.3 2.1E+02 0.0045 26.6 11.8 50 305-356 169-218 (503)
308 KOG3810 Micronutrient transpor 51.1 19 0.00041 32.6 3.4 73 295-367 114-186 (433)
309 PF07857 DUF1632: CEO family ( 47.2 1.9E+02 0.0041 25.0 9.9 26 71-96 113-138 (254)
310 KOG4830 Predicted sugar transp 46.2 27 0.00058 30.2 3.5 49 171-231 35-92 (412)
311 PF15061 DUF4538: Domain of un 44.4 45 0.00097 21.1 3.4 23 70-92 3-25 (58)
312 PF04341 DUF485: Protein of un 43.8 98 0.0021 21.8 5.6 34 149-182 12-45 (91)
313 TIGR02230 ATPase_gene1 F0F1-AT 41.3 1.3E+02 0.0029 21.6 7.4 21 24-44 47-67 (100)
314 COG4262 Predicted spermidine s 40.4 3E+02 0.0064 25.3 14.2 41 316-358 144-185 (508)
315 PF06027 DUF914: Eukaryotic pr 38.5 1.3E+02 0.0029 27.2 7.0 11 219-229 186-196 (334)
316 PF02554 CstA: Carbon starvati 38.4 3.2E+02 0.0069 25.1 16.7 30 11-41 48-78 (376)
317 PF04281 Tom22: Mitochondrial 36.6 1.2E+02 0.0026 23.3 5.3 21 301-321 61-81 (137)
318 PF04281 Tom22: Mitochondrial 35.9 1.4E+02 0.0031 22.9 5.7 23 8-30 59-81 (137)
319 PF04024 PspC: PspC domain; I 34.6 85 0.0018 20.2 3.7 30 68-97 27-60 (61)
320 TIGR02230 ATPase_gene1 F0F1-AT 34.1 1.7E+02 0.0038 21.0 5.5 18 220-237 62-80 (100)
321 PF06779 DUF1228: Protein of u 32.5 1.7E+02 0.0037 20.3 6.7 23 22-44 29-51 (85)
322 TIGR00986 3a0801s05tom22 mitoc 31.5 1.4E+02 0.0031 23.0 5.0 23 8-30 57-79 (145)
323 TIGR00986 3a0801s05tom22 mitoc 30.3 1.3E+02 0.0027 23.3 4.6 52 301-363 59-110 (145)
324 PF03606 DcuC: C4-dicarboxylat 29.3 2.6E+02 0.0057 26.8 7.7 15 81-95 10-24 (465)
325 COG2274 SunT ABC-type bacterio 28.8 3.4E+02 0.0073 27.7 8.6 23 205-227 162-184 (709)
326 PF12273 RCR: Chitin synthesis 28.5 30 0.00064 26.3 1.1 15 73-87 1-15 (130)
327 COG3817 Predicted membrane pro 27.0 92 0.002 26.6 3.6 42 281-322 175-216 (313)
328 PF01102 Glycophorin_A: Glycop 26.9 49 0.0011 24.8 1.9 12 358-369 83-94 (122)
329 TIGR00145 FTR1 family protein. 25.3 4.8E+02 0.01 23.1 11.9 25 20-44 36-60 (283)
330 PF02659 DUF204: Domain of unk 25.0 1.6E+02 0.0034 19.1 3.9 30 205-234 29-58 (67)
331 KOG2513 Protein required for m 25.0 2.9E+02 0.0064 27.2 6.9 32 14-45 523-554 (647)
332 PHA02650 hypothetical protein; 24.0 1.2E+02 0.0026 20.5 3.0 10 69-78 46-55 (81)
333 PRK15015 carbon starvation pro 23.2 7.8E+02 0.017 24.8 16.3 31 11-41 79-109 (701)
334 PF01405 PsbT: Photosystem II 22.2 1.4E+02 0.003 15.8 3.1 10 89-98 19-28 (29)
335 PF14851 FAM176: FAM176 family 22.0 2.7E+02 0.0058 21.9 5.1 7 346-352 25-31 (153)
336 PRK03612 spermidine synthase; 21.3 2.1E+02 0.0046 27.9 5.6 27 18-44 143-169 (521)
337 PF04277 OAD_gamma: Oxaloaceta 21.2 1.3E+02 0.0028 20.3 3.0 21 342-362 12-32 (79)
338 TIGR02185 Trep_Strep conserved 20.9 2.4E+02 0.0051 23.1 5.0 26 205-230 160-185 (189)
339 PF15176 LRR19-TM: Leucine-ric 20.2 1.6E+02 0.0034 21.1 3.2 18 68-85 11-28 (102)
No 1
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=1.6e-34 Score=275.56 Aligned_cols=357 Identities=50% Similarity=0.823 Sum_probs=231.0
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++...+|++|++|+++||+++++.+.+..+|.++++.++..+...+.+.....+..-++.........++||++|.++++
T Consensus 133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~i 212 (502)
T TIGR00887 133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAV 212 (502)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHH
Confidence 46788999999999999999999999999999999999887653221100000000000000000123589999999999
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCC---CC-CCcccccchhhHHhhhhhHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAP---VS-PEASTYGLFSKEFVQKHGLHLLG 157 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (402)
++++.++.++++||||+|+..++++++++.+.+.+..+.+.+++.++.++. ++ .+.+.++++++...+++.+..+.
T Consensus 213 p~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (502)
T TIGR00887 213 PALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLG 292 (502)
T ss_pred HHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHH
Confidence 999888888899999999866444444455556555443222221111111 11 11233444443333333344555
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHH
Q 042372 158 TTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGF 237 (402)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~ 237 (402)
....+++..+.+|+...+.|.++++.|++....+...+............+..++.+++.+++++++||+|||++++++.
T Consensus 293 ~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~ 372 (502)
T TIGR00887 293 TAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGF 372 (502)
T ss_pred HHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Confidence 55556666677888888899999888886543221111111112222344455667778889999999999999998888
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH
Q 042372 238 LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA 317 (402)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 317 (402)
.+++++++++....... . .. .......+...++..+..+..+.+.+|++|++.|+++.|+.+
T Consensus 373 ~~~~~~~~~l~~~~~~~--~--------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~ 434 (502)
T TIGR00887 373 FILTVLFFVLGFAYNHL--S--------------TH--GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISA 434 (502)
T ss_pred HHHHHHHHHHHHHHHhc--c--------------hh--HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHH
Confidence 77777766665432100 0 11 112222222333345566678888999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhcC--------CCchhhhHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 042372 318 AAGKAGAIVGAFGVQYYTQKGD--------KQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEELSG 376 (402)
Q Consensus 318 ~~~~~g~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~~~~~~ 376 (402)
.+++++++++|.+.+.+.+..+ .++...|++++++.+++.+..+++|||++++++|+++
T Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 435 ASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEELSG 501 (502)
T ss_pred HHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhhhC
Confidence 9999999999999999887421 1345678888888887777666669999998877654
No 2
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=262.14 Aligned_cols=328 Identities=19% Similarity=0.220 Sum_probs=258.0
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
...+.|+.|.+|++.||....+.+.+..+|.+++..++.--. ......|++.+.+..++
T Consensus 135 ~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i---------------------lGt~~~W~~l~~~~~i~ 193 (485)
T KOG0569|consen 135 GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL---------------------LGTEDLWPYLLAFPLIP 193 (485)
T ss_pred HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHh---------------------cCCCcchHHHHHHHHHH
Confidence 356789999999999999999999999999999988776544 23566799999999999
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccC--------CCCCCCCCCcccccchhhHHhhhhhHH
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATS--------AYPAPVSPEASTYGLFSKEFVQKHGLH 154 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (402)
+++.++..+++||||+|+..++++++|+++.++..++.+.+++.. +.+..++++.+.++.++++..|+. .
T Consensus 194 ~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~--~ 271 (485)
T KOG0569|consen 194 ALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRP--L 271 (485)
T ss_pred HHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHH--H
Confidence 999999999999999999887888899999999888775322211 111222245567788888777663 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
.+.+.+....+..+.+....|...++.+.|++..++.. ......+..++.++++.++.||+|||++++
T Consensus 272 ~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~------------an~~~g~v~~~~t~~~~~lid~~gRRpLll 339 (485)
T KOG0569|consen 272 LIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQY------------ANLGIGIVNLLSTLVSPFLIDRLGRRPLLL 339 (485)
T ss_pred HHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 45555555566678889999999999999999886554 666777778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
.+..++.++.+++..........+ +.-.+..+....++...+..|+.|+.|.+.+|++|++.|+.+.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 340 ISLSLMAVALLLMSIALFLSNSFG------------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 999998888877766543222110 01112233444555666788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCCCCcccccchhhh
Q 042372 315 ISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNGLSLEELSGEDKE 380 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~~~~~~~~~~~~~ 380 (402)
+...++++..++..+.++.+.+..+ - ..|+++.+.+++..+..+ ++||||+|+..|+.++.++
T Consensus 408 ~~~~~~w~~~fiv~~~fp~l~~~~g--~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 408 VATAVNWLSNFIVGFAFPPLQNVIG--P-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--c-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 9999999999999999999999873 3 778888888888777777 4599999999888776443
No 3
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=244.23 Aligned_cols=347 Identities=56% Similarity=0.952 Sum_probs=276.7
Q ss_pred CCCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 1 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
|||.+.+..+|.+..++||..++.+.+.+++|.+.|.+++..+...+..-++.. +-...-+.=||..|.+++
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~--------~~~~~ld~vWRl~~glg~ 232 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGP--------STYPHLDGVWRIIFGLGA 232 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCC--------CCchHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999888876554322211 000112345999999999
Q ss_pred HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
+|++..+..++.+|||++|.....++.+.+.++..+....+++++.+.. ...+.++....+|.....+++-+..+..+.
T Consensus 233 vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~-~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~ 311 (538)
T KOG0252|consen 233 VPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAE-SDVPPPSNSFGLFSRLFLRWHGKHLLGTAG 311 (538)
T ss_pred HHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccc-cCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999766565555555555544444333333331 122223344456666666667788999999
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.||...+.+|....+...+++++|+.+..... ...+..+-....+...+.++|..+...++|++|||+..+.+++++
T Consensus 312 ~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~ 388 (538)
T KOG0252|consen 312 TWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIM 388 (538)
T ss_pred HHHhhhhhhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHH
Confidence 99999999999999999999999888776443 333445555677777888899999999999999999999999998
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
++..+.++..+... .+...+.+++.+..+++.+|++.+...+.+|.+|++.|+++.|+....+
T Consensus 389 ~i~~~~~~~~y~~~-----------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~G 451 (538)
T KOG0252|consen 389 TIFFFVIAGPYNQL-----------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASG 451 (538)
T ss_pred HHHHHHHcCCcccc-----------------cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhc
Confidence 88888777764421 1223567777888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhh-----hcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCCcccccchh
Q 042372 321 KAGAIVGAFGVQYYTQ-----KGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEELSGED 378 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~~~~~~~~ 378 (402)
.+|++++...+.++.+ .. +.+.++++++.+++++.++.+++|||++++++|++.+.
T Consensus 452 K~GAivg~~~F~~~t~~~yp~~~--g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 452 KAGAIVGAFGFLYLTDHNYPPNI--GVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEE 512 (538)
T ss_pred cchHHHHHHHhhHhhhccCCccc--cchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChh
Confidence 9999999999999988 44 78899999999999999999999999999999886553
No 4
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.97 E-value=2.5e-29 Score=243.93 Aligned_cols=334 Identities=18% Similarity=0.280 Sum_probs=226.3
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
+|++.++++|++|+++||+.++++.++..+|.++++.++..+....+..+. .+......+||+++++.++
T Consensus 273 ~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~----------~g~~~~~~gWR~l~~i~~l 342 (742)
T TIGR01299 273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ----------MGSAYQFHSWRVFVIVCAF 342 (742)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhc----------cccccccccHHHHHHHHHH
Confidence 356789999999999999999999999999999999988877632211000 0001134579999999999
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccc-------------cC-CCC---CCCCCCcc------
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVA-------------TS-AYP---APVSPEAS------ 138 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~---~~~~~~~~------ 138 (402)
++++.+++.+++||||+|+.. +++.+++.+.+.++.+.+.... .. ..+ +.+++...
T Consensus 343 p~ll~ll~~~~lPESPrwL~~-~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (742)
T TIGR01299 343 PCVFAIGALTFMPESPRFFLE-NGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCF 421 (742)
T ss_pred HHHHHHHHHHHcCCCHHHHHH-CCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcch
Confidence 998888888899999999854 5667788887777665432100 00 000 00000000
Q ss_pred ---------cccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc----------------------CCch
Q 042372 139 ---------TYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPAT----------------------GIVR 187 (402)
Q Consensus 139 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------g~~~ 187 (402)
.+..++....+++++..+.+++.+++..+.+|++..|+|.++.+. +++.
T Consensus 422 ~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (742)
T TIGR01299 422 VRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTL 501 (742)
T ss_pred hhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccch
Confidence 001111111223445678888899999999999999999876432 0000
Q ss_pred hh-------------hhh-----------------------hHH------------------------------------
Q 042372 188 KA-------------AAM-----------------------DAI------------------------------------ 195 (402)
Q Consensus 188 ~~-------------~~~-----------------------~~~------------------------------------ 195 (402)
.. .++ +.+
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (742)
T TIGR01299 502 ENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKE 581 (742)
T ss_pred hhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCC
Confidence 00 000 000
Q ss_pred ---------HHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 042372 196 ---------EEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPL 266 (402)
Q Consensus 196 ---------~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (402)
...........++..++.++|.+++|+++||+|||++++++.++.+++++++.+.
T Consensus 582 ~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~---------------- 645 (742)
T TIGR01299 582 GCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG---------------- 645 (742)
T ss_pred ccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 0000122334566778889999999999999999999999888888877766653
Q ss_pred CccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhh
Q 042372 267 HEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSI 346 (402)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 346 (402)
.+....+++..+ ..++..+..+...++++|++|++.|++++|+.+...++|++++|++.+.+... +...+|
T Consensus 646 -----~s~~~ll~~~~l-~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~---~~~~pf 716 (742)
T TIGR01299 646 -----NSESAMIALLCL-FGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI---TKAAPI 716 (742)
T ss_pred -----ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHH
Confidence 111222222222 22323344567778899999999999999999999999999999999988764 556788
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCc
Q 042372 347 IALAVVNFLGFLCSFMVPETNGLSL 371 (402)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~et~~~~~ 371 (402)
++.+++.+++.++.+++|||+++.+
T Consensus 717 ~i~a~~lll~~ll~~~LPET~~~~l 741 (742)
T TIGR01299 717 LFASAALACGGLLALKLPDTRGQVL 741 (742)
T ss_pred HHHHHHHHHHHHHHHhCCCCccccc
Confidence 8888888888888778899988753
No 5
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.96 E-value=3.9e-27 Score=224.06 Aligned_cols=303 Identities=14% Similarity=0.145 Sum_probs=190.2
Q ss_pred CCCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 1 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
+++.+.++++|++|+++||++.++.+.+..+|.++++.+...+.....+. ....+|||++|++++
T Consensus 135 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~---------------~~~~~gWR~~f~i~~ 199 (490)
T PRK10642 135 EYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEA---------------NFLDWGWRIPFFIAL 199 (490)
T ss_pred hHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------------HhcCccHHHHHHHHH
Confidence 45778899999999999999999999999999998887776654322110 114689999999988
Q ss_pred HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
+++++.++++.++||||+|...+++ .++.. . +... ++++.+..+.+ +++++.+.....
T Consensus 200 ~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~-------~-------~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~ 257 (490)
T PRK10642 200 PLGIIGLYLRHALEETPAFQQHVDK-LEQGD-------R-------EGLQ--DGPKVSFKEIA-----TKHWRSLLTCIG 257 (490)
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHh-hhhhc-------c-------cccc--ccccCCHHHHH-----HHhHHHHHHHHH
Confidence 8777777777789999998432111 00000 0 0000 00111112222 222233333334
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
..++....+|....|.|.++++ .|++...... ......++.+++.++.|+++||+|||+.++.+.++
T Consensus 258 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 325 (490)
T PRK10642 258 LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVL------------IIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVA 325 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4445556788888899999865 6777654322 45556677778888999999999999988877654
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
..++...+..... . ...........+...+ ..........+..|.+|++.|+++.|+.+..
T Consensus 326 ~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~~g~~-~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~ 386 (490)
T PRK10642 326 LFVLAIPAFILIN--S----------------NVIGLIFAGLLMLAVI-LNCFTGVMASTLPAMFPTHIRYSALAAAFNI 386 (490)
T ss_pred HHHHHHHHHHHHh--C----------------CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCccchHHHHHHHHH
Confidence 3332222111110 0 1111111111111111 1111223445567999999999999987777
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCCcc
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLE 372 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~~ 372 (402)
..+++.++|.+.+++.+..+ +|..++++..+..+++.+..+++||++++..+
T Consensus 387 ~~~~g~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 387 SVLVAGLTPTLAAWLVESTQ-NLMMPAYYLMVVAVIGLITGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 88888899999998887543 46666666666777777776777998776543
No 6
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.96 E-value=1.9e-26 Score=196.97 Aligned_cols=315 Identities=17% Similarity=0.264 Sum_probs=222.1
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
+|...++-.|..|..+|+.-+... ..+.+|.++...++..+. .+.||||.....+.
T Consensus 183 ~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm-----------------------~~~gwr~~l~~~~~ 238 (528)
T KOG0253|consen 183 LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM-----------------------SNFGWRYLLFTSST 238 (528)
T ss_pred ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH-----------------------HhhhHHHHHHHHHh
Confidence 466677888999999999988888 899999999999999988 77899999999888
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhcccccc-------------ccCC---CCCC-----CCCCcccc
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINV-------------ATSA---YPAP-----VSPEASTY 140 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---~~~~-----~~~~~~~~ 140 (402)
|..+.....+++|||||+... +++++++.+.+.++.+.|-.+ +.++ .++. ++...+..
T Consensus 239 pl~~~a~f~~w~~ESpRf~~~-~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~ 317 (528)
T KOG0253|consen 239 PLMFAARFLVWVYESPRFYLA-KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTT 317 (528)
T ss_pred HHHHHHHHHhhcccCcchhhh-cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchH
Confidence 888888888999999999866 778888888888877654110 0000 0111 11112223
Q ss_pred cchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcC---Cchh----hhhhhHH-HHHHHHHHHHHHHHHhh
Q 042372 141 GLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATG---IVRK----AAAMDAI-EEVFRISKAMFLVALFA 212 (402)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~----~~~~~~~-~~~~~~~~~~~~~~~i~ 212 (402)
+++.. .+|+ ..+..+..++...+.||+.......+++... .... +...... .........-..+..++
T Consensus 318 nLlsp-~lrk---ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitsla 393 (528)
T KOG0253|consen 318 NLLSP-KLRK---TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLA 393 (528)
T ss_pred hhcCh-HHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHh
Confidence 33333 3333 5677778888888899988877766665421 1111 1000000 00001112245667788
Q ss_pred hcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCC
Q 042372 213 TVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGP 292 (402)
Q Consensus 213 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (402)
.++|.++.++++||+|||+.+...+++.+++.+.+..... .+ ....+.+..-.+ ..+.
T Consensus 394 efPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~-------------------rn--~~tvllf~araf-isg~ 451 (528)
T KOG0253|consen 394 EFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT-------------------RN--AYTVLLFTARAF-ISGA 451 (528)
T ss_pred hCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC-------------------cc--hhHHHHHHHHHH-Hhch
Confidence 9999999999999999999999998888887776665421 11 222222223333 3444
Q ss_pred cccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCCCCc
Q 042372 293 NSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNGLSL 371 (402)
Q Consensus 293 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~~~~ 371 (402)
+.+.++|+.|++|+..|+++.|.+...+++|+++.|++. ...+. +-..+..+++++.+++.+...++ -||++|+.
T Consensus 452 fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~---s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 452 FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL---STSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc---ceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 568999999999999999999999999999999999988 33333 45577788888888888888877 58998864
No 7
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.95 E-value=6e-27 Score=223.02 Aligned_cols=320 Identities=18% Similarity=0.199 Sum_probs=204.7
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
+|.+.++++|++|+++||+++++.+.+..+|.++++.+++.+...... ......+||++|++.++
T Consensus 138 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~---------------~~~~~~gWr~~f~~~~~ 202 (479)
T PRK10077 138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA---------------SWLNTDGWRYMFASEAI 202 (479)
T ss_pred hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---------------cccccCChHHHHHHHHH
Confidence 467889999999999999999999999999999998887766521100 01245799999999888
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhH------Hhhhhh-HH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKE------FVQKHG-LH 154 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~ 154 (402)
+.++..+..+++||+|+|+.. +++.+++.+...+..+.+..++ .. ...++..+.+ ...... ..
T Consensus 203 ~~~~~~~~~~~l~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (479)
T PRK10077 203 PALLFLMLLYFVPETPRYLMS-RGKQEQAEGILRKIMGNTLATQ--AL-------QEIKHSLDHGRKTGGKLLMFGVGVI 272 (479)
T ss_pred HHHHHHHHHHcCCCCcHHHHH-cCCHHHHHHHHHHHcCChhHHH--HH-------HHHHHHHHHhhhhhhhhcchhHHHH
Confidence 888777777889999998644 3444444433333221110000 00 0000000000 000000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
........+....+++...++.|.+.++.|.+...... ......+..+++.+++++++||+|||++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~------------~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i 340 (479)
T PRK10077 273 VIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALL------------QTIIVGVINLTFTVLAIMTVDKFGRKPLQI 340 (479)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHH------------HHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 11111222223334555667788888888877653322 444556677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
.+.++++++.+++...... + ......................+..+.+++|.+|++.|+++.|
T Consensus 341 ~~~~~~~v~~~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 403 (479)
T PRK10077 341 IGALGMAIGMFSLGTAFYT--Q---------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALA 403 (479)
T ss_pred HhHHHHHHHHHHHHHHHhc--C---------------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHH
Confidence 9988888877766543221 0 1111122222222222333444667888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHh------hhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCCCCcccccch
Q 042372 315 ISAAAGKAGAIVGAFGVQYYT------QKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNGLSLEELSGE 377 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~~~~~~~~~~ 377 (402)
+.+..++++.++++.+++.+. +.. ++...|++++++.+++.++.++ .||+++++.+|.++.
T Consensus 404 ~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 404 IAVAAQWIANYFVSWTFPMMDKNSWLVAHF--HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhccchhhhc--cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 999999999999988877655 233 6777888888777777776664 499998877665443
No 8
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.95 E-value=3e-26 Score=218.80 Aligned_cols=325 Identities=23% Similarity=0.278 Sum_probs=231.5
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA 83 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~ 83 (402)
+++.|++|++|++.||...+..+....+|..++..++....+ ..++||+.+.+..+++
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~----------------------~~~~Wr~~~~~~~i~~ 219 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK----------------------VYAGWRIPLGLALIPA 219 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc----------------------CCccHHHHHHHHHHHH
Confidence 578999999999999999999999999999999666665531 1168999999999999
Q ss_pred HHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccc---cccCCCC------CCCCCCc-ccccchhhHHhhhhhH
Q 042372 84 ALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDIN---VATSAYP------APVSPEA-STYGLFSKEFVQKHGL 153 (402)
Q Consensus 84 ~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~ 153 (402)
++..+..+++||||+|+.. +++.+++++.+.+..+.+.+ .+.++.. ....+.+ ...+++.+.. .++
T Consensus 220 ~~~~~~~~~~pesp~~L~~-~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~ 295 (513)
T KOG0254|consen 220 VILALGMLFLPESPRWLIE-KGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKV---RKR 295 (513)
T ss_pred HHHHHHHHhCCCChHHHHH-cCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcch---HHH
Confidence 9987778889999999854 67778888888877763211 1111100 0000111 1222333111 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.++...+..+.+..+++...+|.+.+++..|..... .. ...+..+..+++..++.++.||+|||+++
T Consensus 296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~------------~~~~~~~v~~~~t~~~~~lvd~~gRr~ll 362 (513)
T KOG0254|consen 296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FL------------ASIILGVVNFLGTLVATYLVDRFGRRKLL 362 (513)
T ss_pred HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 566677777777788888999999999998877542 11 44444555566666779999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
+.+...+.+++++++............ .....+..+....+....+..+..++.|.+.+|.+|.+.|+.+.
T Consensus 363 l~s~~~m~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~ 433 (513)
T KOG0254|consen 363 LFGAAGMSICLVILAVVGVFALYYPNS---------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGA 433 (513)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccCCCc---------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhH
Confidence 999999999998887765432221000 00223344445555566667888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHH-HHh-hcccCCCCCcccccchh
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFL-CSF-MVPETNGLSLEELSGED 378 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~et~~~~~~~~~~~~ 378 (402)
++...++++.+++....+....... +....|..++....+... +.+ ++|||++++++|+++..
T Consensus 434 s~~~~~n~~~~~~v~~~~~~~~~~~--~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 434 SLAVAVNWLWNFLISFFFPFITEAL--GIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 9999999999988777777776654 335666666666666665 444 55999999999887753
No 9
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.95 E-value=1.2e-31 Score=253.18 Aligned_cols=325 Identities=27% Similarity=0.409 Sum_probs=221.9
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++.+.+|+.|.+|+++|++..++.+.+..+|.+++..++..+.. ..+.++||+.++++++
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~--------------------~~~~~~Wr~~~~~~~~ 179 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY--------------------YSDNWGWRILLIFGAI 179 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc--------------------cccccccccccccccc
Confidence 56788999999999999999999999999999999888766531 1124679999999999
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhcccccccc-CC----CCCCCCCCcccccchhhHHhhhhhHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVAT-SA----YPAPVSPEASTYGLFSKEFVQKHGLHLL 156 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
++++.++..+++||||+|+.. +++.+|+++.+++..+.+.+++. ++ .++.++++.+..++++++..++ +..+
T Consensus 180 ~~l~~~~~~~~~pESP~wL~~-~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~ 256 (451)
T PF00083_consen 180 PSLLVLLLRFFLPESPRWLLS-KGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRK--RLLI 256 (451)
T ss_pred ccccccccccccccccceecc-cccccccccccccccccccccccccccccccccccccceeeeeccccccccc--cccc
Confidence 998888888899999999955 55666777777775444322211 11 1111111223444444433222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372 157 GTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG 236 (402)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~ 236 (402)
...+..+....+++....|.+.++++.+.+... . ......+..+++.+++.+++||+|||++++.+
T Consensus 257 ~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~ 322 (451)
T PF00083_consen 257 ALLLQFFQQFSGINFIFYYSPSIFENAGISNSF--L------------ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIG 322 (451)
T ss_pred ccccccccccccccccccccccccccccccccc--c------------cccccccccccccccccccccccccccccccc
Confidence 333333343445566677778888877766551 1 34445566777777888999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372 237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
..+++++.+.++.... ....+. +......+....+.......+..+..+.+++|++|++.|+++.++.
T Consensus 323 ~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~ 390 (451)
T PF00083_consen 323 LLLMAICSLILGIIFF-LGVSSS-----------SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLS 390 (451)
T ss_pred cccccccccccccccc-cccccc-----------cccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence 8887777766651111 111100 0011222233333334445677788889999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCCCCcccccch
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNGLSLEELSGE 377 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~~~~~~~~~~ 377 (402)
...+++++++++.+.+.+.+.. +....+.+++++.++..++.+ ++|||++++++|+++.
T Consensus 391 ~~~~~i~~~i~~~~~~~~~~~~--~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 391 YAVGRIGGFIIPFLFPYLFNNL--GGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccc--cccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 9999999999999988888765 434667777777776666655 5699999999988653
No 10
>TIGR00898 2A0119 cation transport protein.
Probab=99.95 E-value=6.2e-26 Score=217.37 Aligned_cols=299 Identities=18% Similarity=0.300 Sum_probs=199.3
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++...+++.|++|+++|+++.++.+.+..+|.++++.+++.+. +||+.|++.++
T Consensus 198 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------------~wr~~~~~~~i 251 (505)
T TIGR00898 198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--------------------------DWRWLQLAVSL 251 (505)
T ss_pred HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------HHHHHHHHHHH
Confidence 3567789999999999999999999999999999999887663 29999999998
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccC---CC--CC---CCCCCcccccchhhHHhhhhhH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATS---AY--PA---PVSPEASTYGLFSKEFVQKHGL 153 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~---~~~~~~~~~~~~~~~~~~~~~~ 153 (402)
+.++..+..+++||||+|+.. +++.+++.+.+.+..+.+.....+ +. ++ .+.++.+.+++++++..++
T Consensus 252 ~~~~~~~~~~~~~esp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 327 (505)
T TIGR00898 252 PTFLFFLLSWFVPESPRWLIS-QGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRK--- 327 (505)
T ss_pred HHHHHHHHHHhcCCChHHHHH-CCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHH---
Confidence 888877777889999999854 555566666555544322111000 00 00 0011123334444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
..+.....++.....++....+.+. .+.+... ......+..+++.++.+++.||+|||+.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~~~~~~~~i~~~~~~~~l~dr~grr~~~ 388 (505)
T TIGR00898 328 TTLCLMMLWFTTAFSYYGLVLDLGN----LGGNIYL---------------DLFISGLVELPAKLITLLLIDRLGRRYTM 388 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc----cCCChHH---------------HHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3444444555555555555444433 3333211 33344566777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
.++.++.+++++++..... ...+...... +...++..+..+..+++.+|.+|++.|+++.
T Consensus 389 ~~~~~~~~~~~l~~~~~~~-------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 448 (505)
T TIGR00898 389 AASLLLAGVALLLLLFVPV-------------------DLYFLRTALA-VLGKFGITSAFQMVYLYTAELYPTVVRNLGV 448 (505)
T ss_pred HHHHHHHHHHHHHHHHcCC-------------------CchHHHHHHH-HHHHHHHHHHHHHHHHHhcccccHHHHhhhH
Confidence 9888777777665544311 1111222222 2222222333456677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCCccc
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEE 373 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~~~ 373 (402)
|+.+...++|++++|.+.+ +.+. ++..++.+++++.+++.++.+++|||+++++++
T Consensus 449 g~~~~~~~ig~~i~p~i~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~ 504 (505)
T TIGR00898 449 GVCSTMARVGSIISPFLVY-LGEK---WLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504 (505)
T ss_pred hHHHHHHHHHHHHHhHHHH-HHHH---HHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence 9999999999999999988 4433 566788888888888888888889999877654
No 11
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.94 E-value=5.4e-25 Score=209.50 Aligned_cols=320 Identities=24% Similarity=0.313 Sum_probs=207.4
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVIS---LIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG 79 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~ 79 (402)
+...+++.|++|+++|++++++.+.+..+|.++++.++ .... ...+||+.|++.
T Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----------------------~~~~w~~~f~~~ 202 (481)
T TIGR00879 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN-----------------------NTLGWRIPLGLQ 202 (481)
T ss_pred hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC-----------------------CCccHHHHHHHH
Confidence 55678999999999999999999999999999999998 3322 567899999998
Q ss_pred hHHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccC-C---------CCCCCCCCcccccchhhHHhh
Q 042372 80 AVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATS-A---------YPAPVSPEASTYGLFSKEFVQ 149 (402)
Q Consensus 80 ~i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~ 149 (402)
++..++.++..+++||+|+++.. +++.+++.+...+..+.+.++... + ..+.+..+....+.++. ..+
T Consensus 203 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 280 (481)
T TIGR00879 203 LIPAGLLFLGLFFLPESPRWLVG-KGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSS-TRR 280 (481)
T ss_pred HHHHHHHHHHHhcCCCChHHHHH-cCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhc-Cch
Confidence 77777777777889999987543 333333333222221111000000 0 00000000001111110 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch
Q 042372 150 KHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR 229 (402)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr 229 (402)
..++.++...+..+...........+.|.+.++.|++....+. ......++.+++.++.++++||+||
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~~~ 348 (481)
T TIGR00879 281 IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFL------------VSIIVGAVNFAFTFVAIFLVDRFGR 348 (481)
T ss_pred hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0122344444444444444455667788888888887754332 6666777788888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhh
Q 042372 230 FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLR 309 (402)
Q Consensus 230 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 309 (402)
|+.+.++..+.+++.+++........... + + ...........+...+...+..+....++.|.+|++.|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (481)
T TIGR00879 349 RPLLLIGAAGMAICLFVLGILGASFVTGS-S-K---------SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR 417 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCc-c-c---------chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHH
Confidence 99998887777777666653322111100 0 0 01222233333333444455556777788999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCCCCcc
Q 042372 310 STCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNGLSLE 372 (402)
Q Consensus 310 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~~~~~ 372 (402)
+++.++.+...+++++++|.+.+.+.+.. +|...|++.+++++++.++.++ .||+++++.+
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLESI--GVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 99999999999999999999999988876 8888999988888887777664 4888766543
No 12
>PRK09952 shikimate transporter; Provisional
Probab=99.94 E-value=1.1e-24 Score=204.33 Aligned_cols=293 Identities=15% Similarity=0.148 Sum_probs=185.5
Q ss_pred CCCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 1 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
++|.+..++.|++|+++|++..+..+.+..+|.+++..+...+.....+. ....+|||++|++++
T Consensus 142 ~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~---------------~~~~~gWr~~f~~~~ 206 (438)
T PRK09952 142 EWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDE---------------QFLSWGWRIPFLFSI 206 (438)
T ss_pred cHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---------------HhhccChHHHHHHHH
Confidence 45677889999999999999999999999999999988777665322210 113579999999998
Q ss_pred HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
++.++.++++..+||+|+|...+.+. ++. +++... .+. .+++++.......
T Consensus 207 ~~~l~~~~l~~~~~es~~~~~~~~~~-~~~-----------------------~~~~~~----~~~-l~~~~~~~~~~~~ 257 (438)
T PRK09952 207 VLVLIALWVRNGMEESAEFEQQQHEQ-AAA-----------------------KKRIPV----IEA-LLRHPGAFLKIIA 257 (438)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHhhc-ccc-----------------------cccCCH----HHH-HHHchHHHHHHHH
Confidence 88777666677789999873221010 000 000000 111 1122223333333
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
..++....+|....|.|.++++ .|++...... ......+..+++.++.|+++||+|||+.++.+.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~------------~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~ 325 (438)
T PRK09952 258 LRLCELLTMYIVTAFALNYSTQNLGLPRELFLN------------IGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALI 325 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 4445555677777788888754 6766543111 23334455666777899999999999988877665
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
..++...+..... . .+....++...+..++......+..+++.+|.+|++.|+++.++.+..
T Consensus 326 ~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~ 387 (438)
T PRK09952 326 GTLSAFPFFMALE--A----------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQV 387 (438)
T ss_pred HHHHHHHHHHHHH--c----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHH
Confidence 5444332222111 0 111122222222222222222345667889999999999999997776
Q ss_pred HH-HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 320 GK-AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 320 ~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
+. +++.++|.+.+++.+..+.+|...+.+.+++.+++.+..+.++|++
T Consensus 388 ~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 388 ASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 55 7889999999999885532577778877788888877777667643
No 13
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=190.34 Aligned_cols=291 Identities=16% Similarity=0.203 Sum_probs=210.4
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVIS--LIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG 79 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~ 79 (402)
+|.+...++.|+|+++||+..++++++.++|..+.+++. +.+. .+.+||..|++.
T Consensus 135 wpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~-----------------------~~~~w~~~f~~p 191 (448)
T COG2271 135 WPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA-----------------------FHGGWRAAFYFP 191 (448)
T ss_pred CcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH-----------------------hccchhHHHHHH
Confidence 678889999999999999999999999999999999988 6665 566899999998
Q ss_pred hHHHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCC-CcccccchhhHHhhhhhHHHHH
Q 042372 80 AVPAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSP-EASTYGLFSKEFVQKHGLHLLG 157 (402)
Q Consensus 80 ~i~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (402)
++.+++ .+++++.++|+|+-.-. ...+|. .++..+.+ ++++++ ..+.++.+.+-.+++ +.++.
T Consensus 192 giiaiival~~~~~~rd~Pqs~GL--P~ie~~-------~~d~~e~~----~~~~~~~~ls~~~i~~~YVL~N--k~iW~ 256 (448)
T COG2271 192 GIIAIIVALILLFLLRDRPQSEGL--PPIEEY-------RGDPLEIY----EEEKENEGLTAWQIFVKYVLKN--KLIWL 256 (448)
T ss_pred HHHHHHHHHHHHHHhCCCccccCC--CCHHHh-------hcCchhhh----hhhccCCCccHHHHHHHHHHcC--hHHHH
Confidence 888776 56666778999864211 111111 11111111 111111 245566666666655 36778
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chhHHHH
Q 042372 158 TTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRFIIQL 234 (402)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~ 234 (402)
+.+..+.....-|++..|.|.|+.+ .|++..++.. ..+..=.+.++|++++|+++||+ |||....
T Consensus 257 la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~------------a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~ 324 (448)
T COG2271 257 LALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANW------------AISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA 324 (448)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHH------------HHHHHHHHhhHHHHHHHHHHHHhcccccchHH
Confidence 8888888888999999999999987 7788776554 77778889999999999999997 6776655
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
+.+.+....+++... ... +.+..+..++....++...++.-+.-..+.|..|++..|++.|
T Consensus 325 ~i~~~~i~~~~~~~w----~~~---------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~G 385 (448)
T COG2271 325 LIFMLLITASLVLYW----LAP---------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATG 385 (448)
T ss_pred HHHHHHHHHHHHHHH----cCC---------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhc
Confidence 443322222222211 111 2233444445555555567776566667799999999999999
Q ss_pred HHHHHHHH-HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 315 ISAAAGKA-GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 315 ~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+...++++ |...+....+++.+.. +|...|+++.+.++++.++...+
T Consensus 386 f~Glf~Yl~Ga~~a~~~~g~i~d~~--gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 386 FVGLFAYLIGAALAGLPLGYIADTW--GWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hhhhHHHHhhHHhcCCcceeeEecC--CCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999 8888889999998886 99999999988888887776644
No 14
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.91 E-value=1.3e-22 Score=190.27 Aligned_cols=287 Identities=21% Similarity=0.207 Sum_probs=171.6
Q ss_pred CCCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 1 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
++|.+.++++|++|+++||++.++.+.+...|.++++.+...+.....+. ....+|||++|++++
T Consensus 141 ~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~---------------~~~~~gWr~~F~i~~ 205 (432)
T PRK10406 141 EYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA---------------ELREWGWRIPFALGA 205 (432)
T ss_pred hHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---------------HHhccchHHHHHHHH
Confidence 46888999999999999999999999999999988888766654322110 113579999999999
Q ss_pred HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
+++++.++++..+||+|++.. ++ .+ ++.+.++.++ +++..+....
T Consensus 206 ~~~ll~~~~~~~~~e~~~~~~--~~--~~-------------------------~~~~~~~l~~------~~~~~~~~~~ 250 (432)
T PRK10406 206 VLAVVALWLRRQLDETSQQET--RA--LK-------------------------EAGSLKGLWR------NRRAFIMVLG 250 (432)
T ss_pred HHHHHHHHHHhcCCCCchHHH--hh--hc-------------------------ccccHHHHHh------hHHHHHHHHH
Confidence 988887777777899876411 00 00 0111112221 1122222222
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
..+.....+|....|.|.++++ .|++..+.+. ...+..++..++.++.|+++||+|||+.++++..+
T Consensus 251 ~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~------------~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~ 318 (432)
T PRK10406 251 FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASG------------IMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSL 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 2333355677788889998865 6877654332 44444555566677889999999999987766554
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
.++....+..... .. ........+..+..+... ...+..+.+.+|.+|++.|+++.|+.+..
T Consensus 319 ~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 319 AALFTVPILSALQ--NV---------------SSPYAAFGLVMCALLIVS-FYTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHHHHHHHHH--cC---------------CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 3333221211110 00 111111111111111111 11224556779999999999999999988
Q ss_pred HHH-HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCC
Q 042372 320 GKA-GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLS 370 (402)
Q Consensus 320 ~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~ 370 (402)
+++ .+...|.+.+.+ +..+ .+...+++.++..+++.+..+++ ++++|+
T Consensus 381 g~~~~g~~~p~~~~~l-~~~g-~~~~~~~~~~~~~~i~~~~~~~l-~~~~~~ 429 (432)
T PRK10406 381 ANALFGGSAEYVALSL-KSIG-METAFFWYVTLMAVVAFLVSLML-HRKGKG 429 (432)
T ss_pred HHHHHHhHHHHHHHHH-HHhC-CCcHHHHHHHHHHHHHHHHHHHh-hhcccc
Confidence 775 344577777755 4332 35555666566666666655554 333443
No 15
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.91 E-value=2.5e-22 Score=188.41 Aligned_cols=294 Identities=13% Similarity=0.090 Sum_probs=180.7
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +.++||+.|++.++
T Consensus 129 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~gw~~~f~~~~i 185 (434)
T PRK11663 129 WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA-----------------------LHYGWRYGMMIAGI 185 (434)
T ss_pred chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HcccHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999887 56789999998877
Q ss_pred HHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 PAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
+.++ .++..+++||+|++... ...++..+ + ..+..++.+.++.+..+.++....++ +.++....
T Consensus 186 ~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 250 (434)
T PRK11663 186 IAIVVGLFLCWRLRDKPQAMGL--PSVGEWRH--------D---ALELAQQQEGAGLSRKEILTKYVLLN--PYIWLLSF 250 (434)
T ss_pred HHHHHHHHHHHHcCCCHhhcCC--CCcccccc--------c---ccccchhccccCCChhhhHHHHHhcC--hHHHHHHH
Confidence 6654 34455668998764211 10000000 0 00000000000111112222112221 23444444
Q ss_pred HHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chh-HHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRF-IIQLGG 236 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr-~~~~~~ 236 (402)
..+.....++....|.|.++. +.|++..+.+. ......++.+++.++.|+++||+ ++| ......
T Consensus 251 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~------------~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~ 318 (434)
T PRK11663 251 SYVLVYVVRAAINDWGNLYMSETLGVDLVTANS------------AVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF 318 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH------------HHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence 444455556677778888885 47888775443 66667788889999999999998 333 322222
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372 237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
.+...+....+.... . .+... .....+..+++..++......+..|.+|++.|+++.|+.
T Consensus 319 ~~~~~~~~~~~~~~~----~---------------~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 378 (434)
T PRK11663 319 AAGILLSVGSLWLMP----F---------------ASYVM-QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFV 378 (434)
T ss_pred HHHHHHHHHHHHHcc----c---------------ccHHH-HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHH
Confidence 111121111111110 0 11111 111122222222222223334568999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETN 367 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~ 367 (402)
++..++|.+++|.+.+++.+.. +|...|.+.+++.+++.+..+.. ++.+
T Consensus 379 ~~~~~~g~~~~p~~~g~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 379 GLFAYLGAALSGYPLAKVLEIW--HWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HHHHHHHHHHhcccHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999987 89999999888888777666544 4433
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.90 E-value=3.9e-22 Score=185.87 Aligned_cols=273 Identities=21% Similarity=0.265 Sum_probs=181.2
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|++|+++|++++++.+.+..+|.++++.++..+. ...+||+.|++.++.
T Consensus 122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~ 178 (406)
T PRK11551 122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA-----------------------GDAAWRHIFYVGGVG 178 (406)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------------cccCHHHHHHHHHHH
Confidence 456788999999999999999999999999999999987765 667899999987765
Q ss_pred HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++ .++...++||+|++.. ++.+++.. +......++.... +........
T Consensus 179 ~~~~~~~~~~~l~~~~~~~~--~~~~~~~~------------------------~~~~~~~~~~~~~----~~~~~~~~~ 228 (406)
T PRK11551 179 PLLLVPLLMRWLPESRAFAQ--AAGAGKQR------------------------APVLRALFGEGRA----TATLLLWIS 228 (406)
T ss_pred HHHHHHHHHHhCCCChhHHh--ccCcchhh------------------------hhhHHHHhhhhhh----hHHHHHHHH
Confidence 554 3445556899886532 11110000 0000001111111 112222233
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
.+......+....+.|.++++.|++..+.+. ......++.+++.++.|++.||+|||+.+..+.....
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 296 (406)
T PRK11551 229 YFFTLIVLYFLLNWLPSLLVGQGLSRSQAGL------------VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL 296 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333445566677889998888888775444 6666778888999999999999999998887655554
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 321 (402)
++...+... .+.+. ..+..+..++...+..+..+++..|.+|++.|+++.|+.+....
T Consensus 297 ~~~~~~~~~---------------------~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 354 (406)
T PRK11551 297 ASLAALAAA---------------------PSFAG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR 354 (406)
T ss_pred HHHHHHHhc---------------------CcHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhh
Confidence 444433321 11112 22222223333334455667788999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+|..++|.+.+.+.+..+ ++...+.......+++.++.+++
T Consensus 355 ~g~~~g~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 355 LGSMAGPLLAGQLLALGR-STVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHhhhHhhhhccCC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988643 45566666666666666655544
No 17
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.90 E-value=5.4e-22 Score=181.02 Aligned_cols=263 Identities=13% Similarity=0.062 Sum_probs=170.7
Q ss_pred hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
....++|++|+++|++++++.+.+..+|.++++.++..+. ..+|||+.|++.+++++
T Consensus 99 ~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~-----------------------~~~gWr~~f~~~~~l~~ 155 (368)
T TIGR00903 99 AFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY-----------------------TAGGLQLLIIPIAAVAA 155 (368)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HccchHHHHHHHHHHHH
Confidence 4566799999999999999999999999999999999987 56899999999666655
Q ss_pred H-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 85 L-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 85 ~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
+ .++.++++||+|++. ++..+. .+. .+.. + +.+++ +.++......+
T Consensus 156 ~~~~~~~~~lp~~p~~~---~~~~~~-~~~----------------------~~~~----~-~ll~~--~~~~~~~~~~~ 202 (368)
T TIGR00903 156 AGIILVLAALPALPFQA---AEGFGF-KDA----------------------VKEF----G-ALAGR--KDLWIIGAILG 202 (368)
T ss_pred HHHHHHHHHcCCCCCCC---CCCcch-HHH----------------------HHHH----H-HHHcC--hhHHHHHHHHH
Confidence 5 455667799998762 111000 000 0001 1 12222 24566666777
Q ss_pred HHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh---HHHHH-HHHH
Q 042372 164 LLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF---IIQLG-GFLL 239 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr---~~~~~-~~~~ 239 (402)
+....++++..|+|.++++.|++.. .+. ...+..+...+ ..++++||..|| +.... ..++
T Consensus 203 ~~~~~~~~~~~wlp~~L~~~g~s~~-~~~------------~~~l~~~~g~~---g~~~~~d~~~r~~~r~~~~~~~~~~ 266 (368)
T TIGR00903 203 FGVALFDNLAIWLEAALRPAGLEDI-AGD------------AVALAILAGLI---GVAVIPDRVARAGLRSIYIRAAALL 266 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChH-HHH------------HHHHHHHHHHH---HHHHhhHHhhhhhhHHHHHHHHHHH
Confidence 7778888999999999988777643 222 22233333333 357788887543 33222 2222
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
.++....+... .+.... .......+++..+..+..+++.+|.+|++.|+++.|+.+..
T Consensus 267 ~a~~~~~~~~~---------------------~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~ 324 (368)
T TIGR00903 267 IAAFFLALAFE---------------------LNRLAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFT 324 (368)
T ss_pred HHHHHHHHHHc---------------------cccHHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHH
Confidence 22222222211 111122 22222222334444455778889999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhccc
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPE 365 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 365 (402)
++++++++|.+.+.+.. +....|.++++..+++.+..+.+++
T Consensus 325 g~~~~~~~~~~~~~~~~----~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 325 SRAISVALALAAMLFIS----SAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999998887773 6667788888888887777654443
No 18
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.90 E-value=9.3e-22 Score=183.06 Aligned_cols=292 Identities=11% Similarity=0.130 Sum_probs=176.0
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
+|....++.|++|+++|++++++++.+.++|.++++.+++.+..... ..+..|||+.|++.++
T Consensus 114 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----------------~~~~~gwr~~f~~~~~ 176 (412)
T TIGR02332 114 LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG-----------------LMALKGWQWLFLLEGF 176 (412)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCccchhHHHHHHHH
Confidence 35566789999999999999999999999999999999988762100 0134689999999887
Q ss_pred HHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccc-cccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372 82 PAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTD-INVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT 159 (402)
Q Consensus 82 ~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (402)
++++ .++..+++||+|+. .+.-.++ +.+...+..+.+ .+.+..+ ...++++....+.++ ..++ +.++...
T Consensus 177 ~~l~~~~~~~~~~~~~p~~--~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~---~~~~~~~ 248 (412)
T TIGR02332 177 PSVILGVMTWFWLDDSPDK--AKWLDEE-DKKALKEMIDNDQLTLEQPE-GAFAHAAMPQRSMLR-EIFT---PAIMLYT 248 (412)
T ss_pred HHHHHHHHHhhccCCCccc--CCCCCHH-HHHHHHHHHHhccccccccc-cccccccccHHHHHH-HhcC---hHHHHHH
Confidence 7765 44556678999853 1000111 111111111111 0000000 000000000011111 1111 2345555
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhc--CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH-HHH
Q 042372 160 STWFLLDIAFYTINLTQKDIYPAT--GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ-LGG 236 (402)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~-~~~ 236 (402)
...++....++.+..|.|.++++. +.+..+.+. ......++.++|.++.|+++||++||+.. ...
T Consensus 249 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~------------~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~ 316 (412)
T TIGR02332 249 LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGL------------LAAIPQFCTIFGMIWWSRHSDRLKERKHHTALP 316 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHH------------HhhHHHHHHHHHHHHHHHHhcccCccHHHHHHH
Confidence 666666677888889999999874 455543333 67777888889999999999999977643 333
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372 237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
.++..+.. .+... . ............ ...+.....+..+....|.+|++.|+++.|+.
T Consensus 317 ~~~~~~~~-~~~~~----~----------------~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~ 374 (412)
T TIGR02332 317 YLFAAAGW-LLASA----T----------------DHNLIQLLGIIM-ASMGSFSAMAIFWTTPDQSISLQARAIAIAVI 374 (412)
T ss_pred HHHHHHHH-HHHHh----c----------------CCHHHHHHHHHH-HHHHhhhhhhHHHhhcccccchHHHHHHHHHH
Confidence 33333322 21111 0 111111111111 11222222334445567889999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN 353 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (402)
+...++|++++|.+.+.+.+..+ +|...+.+.+++.
T Consensus 375 ~~~~~~g~~~~p~~~g~i~~~~g-~~~~~~~~~~~~~ 410 (412)
T TIGR02332 375 NATGNIGSALSPFLIGILKDATG-SFNSGLWFVAALL 410 (412)
T ss_pred HHhhhhhhhhhhhhcccccccCC-CCchhHHHHHHHH
Confidence 99999999999999999998764 5888777665543
No 19
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.89 E-value=3.1e-21 Score=180.99 Aligned_cols=265 Identities=18% Similarity=0.160 Sum_probs=164.1
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++....++.|++|+++|+++.++...+..+|.++++.+...+. +..+||+.|++..+
T Consensus 124 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~-----------------------~~~~w~~~f~i~~~ 180 (426)
T PRK12307 124 YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA-----------------------EAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc-----------------------ccCCHHHHHHHHHH
Confidence 3556788999999999999999999999999999998887775 56789999998766
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
+.++.+......||++++.. ++.+++ .+ +.....+..+...++.++++ ..+..+.....
T Consensus 181 ~~~~~~~~~~~~p~~~~~~~--~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 239 (426)
T PRK12307 181 PVLLVIYIRARAPESKEWEE--AKLSGK--------------GK-HSQSAWSVFSLSMKGLFNRA----QFPLTLCVFIV 239 (426)
T ss_pred HHHHHHHHHHHCCCChHHHH--hhhhcc--------------cc-ccccchhhhhHHHHHHHhhc----hHHHHHHHHHH
Confidence 55554444445677765421 100000 00 00000000000111222211 11112222222
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
.+......+....+.|.++++.|++....+. ......++.+++.++.|++.||+|||+.+..+.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~ 307 (426)
T PRK12307 240 LFSIFGANWPIFGLLPTYLAGEGFDTGVVSN------------LMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSF 307 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2333333444566788888888877664333 5566777888899999999999999998887776655
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 321 (402)
+..+.+.... ...........+...+...+..+....++.|.+|++.|+++.|+.+....
T Consensus 308 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 367 (426)
T PRK12307 308 LFIFPLFRIP--------------------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAA 367 (426)
T ss_pred HHHHHHHHHc--------------------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHh
Confidence 4443332211 11111111112222222223333445667899999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcCCCchh
Q 042372 322 AGAIVGAFGVQYYTQKGDKQIKQ 344 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~~~ 344 (402)
+++.++|.+.+++.+.. ++..
T Consensus 368 ~~~~~gp~~~g~l~~~~--g~~~ 388 (426)
T PRK12307 368 TSGTFNSMAATWLGITM--GLGA 388 (426)
T ss_pred HHHHHHHHHHHHHHHcc--cHHH
Confidence 99999999999998876 5443
No 20
>PRK15075 citrate-proton symporter; Provisional
Probab=99.89 E-value=4.2e-21 Score=180.16 Aligned_cols=259 Identities=15% Similarity=0.158 Sum_probs=156.7
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++...++++|++|+++|++++++...+..+|..+++.++..+...+.+. ....+|||++|+++.+
T Consensus 135 ~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~---------------~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 135 LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPA---------------QMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---------------HHhccchHHHHHHHHH
Confidence 4566789999999999999999999999999988888888775322110 0145789999998765
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
..++.++.....||++++.. ++++ .+..+.++. .+++++..+.....
T Consensus 200 ~~~~~~~~~~~~~e~~~~~~--~~~~-----------------------------~~~~~~~~~--~~~~~~~~~~~~~~ 246 (434)
T PRK15075 200 IVPFIFLIRRSLEETEEFLA--RKHR-----------------------------PSMREIFRS--LAANWRIVLAGMLM 246 (434)
T ss_pred HHHHHHHHHHhcCCCHHHHH--hhhc-----------------------------cccccHHHH--HHHhHHHHHHHHHH
Confidence 54444444444566543210 0000 000011111 11122223232333
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.+.....++....|.|.++++ .|++..+.+. ...+..++.+++.++.|+++||+|||+.++.+..+.
T Consensus 247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~ 314 (434)
T PRK15075 247 VAMTTVSFYLITVYTPTFGKTVLHLSAADSLL------------VTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLA 314 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344455677788889999886 7887765433 556667778888889999999999999887765443
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.+.......... . . ...........+...+ .....+..+.+..|.+|++.|+++.++.+..+
T Consensus 315 ~~~~~~~~~~~~--~-~--------------~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~ 376 (434)
T PRK15075 315 ILTAYPALSWLV--A-A--------------PSFARMLAVELWLSFL-YGSYNGAMVVALTEVMPAEVRTAGFSLAYSLA 376 (434)
T ss_pred HHHHHHHHHHHH--c-C--------------CchHHHHHHHHHHHHH-HHHHHhhHHHHHHHHCCCCccchheeHHHHHH
Confidence 322211111100 0 0 1111111111111111 11222334466799999999999999976666
Q ss_pred HH-HHHHHHHhHHHHhhhc
Q 042372 321 KA-GAIVGAFGVQYYTQKG 338 (402)
Q Consensus 321 ~~-g~~i~~~~~~~~~~~~ 338 (402)
.. ++.++|.+.+++.+..
T Consensus 377 ~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 377 TAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred HHHHhhhHHHHHHHHHHhc
Confidence 65 5788999999999887
No 21
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.89 E-value=2.7e-21 Score=180.72 Aligned_cols=282 Identities=9% Similarity=-0.008 Sum_probs=183.4
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA 83 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~ 83 (402)
...+++.|+.|+++|+++.++......+|.++++.+++.+. +..+||+.|++.++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~-----------------------~~~~~~~~~~~~~~~~ 186 (417)
T PRK10489 130 ALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI-----------------------AAGGVAWNYGLAAAGT 186 (417)
T ss_pred HHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH-----------------------HHHhhHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999887 4567999999888777
Q ss_pred HHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 84 ALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 84 ~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
++..+..+.+||+++. ++++++..+.. .+.++. .++++ .+.......+
T Consensus 187 ~~~~~~~~~l~~~~~~----~~~~~~~~~~~-------------------------~~~~~~-~~~~~--~~~~~~~~~~ 234 (417)
T PRK10489 187 FITLLPLLRLPALPPP----PQPREHPLRSL-------------------------LAGFRF-LLASP--VVGGIALLGG 234 (417)
T ss_pred HHHHHHHHhCCCCCCC----CcccccchHHH-------------------------HHHHHH-HHcCh--HHHHHHHHHH
Confidence 7766666778876532 11000000000 000011 11111 1111111111
Q ss_pred HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372 164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI 242 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~ 242 (402)
+.. .......+.|.+.++ .|.++...+. ......++.+++.++.+++.||.++++.+..+..+.++
T Consensus 235 ~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~------------~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~ 301 (417)
T PRK10489 235 LLT-MASAVRVLYPALADEVWQMGAAQIGL------------LYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFL 301 (417)
T ss_pred HHH-HHHhHHHhhHHHHHhccCCChhHhHH------------HHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHH
Confidence 111 123455567888887 7887765443 66667788888899999999998877777777666555
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA 322 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 322 (402)
+.+++... .+. ....+..+..+.+.....+...+++.|..|++.|+++.|+.+....+
T Consensus 302 ~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 359 (417)
T PRK10489 302 AVGLFGLM---------------------PMW-ILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVT 359 (417)
T ss_pred HHHHHHcc---------------------chH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh
Confidence 55443321 111 12222222222222222334556778999999999999999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHH-HHHhhcccCCCCCcccccch
Q 042372 323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGF-LCSFMVPETNGLSLEELSGE 377 (402)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~et~~~~~~~~~~~ 377 (402)
|..+++.+.+.+.+.. ++...+.+.+++.++.. +....++++++++.+|++++
T Consensus 360 g~~~g~~l~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 360 GDAIGAALLGGLGAMM--TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred hHhHHHHHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 9999999999999987 67777776666655544 44445698888877776554
No 22
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.88 E-value=8.3e-22 Score=186.61 Aligned_cols=294 Identities=14% Similarity=0.098 Sum_probs=182.9
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
+|....+++|++|+++||+++++++.+.++|.++++.+...+.... ...+||..|.+.++
T Consensus 140 ~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~--------------------~~~~~~~~f~~~g~ 199 (467)
T PRK09556 140 GPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF--------------------FDGHVIGMFIFPSI 199 (467)
T ss_pred chHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh--------------------ccCcchhHHHHHHH
Confidence 4667789999999999999999999999999999998887665210 11259999988776
Q ss_pred HHHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 PAALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
++++. ++..++++++|+.. +..+.++ .. +....++.+ ..++++.+..+.+.+..+++ +.++...+
T Consensus 200 ~~~~~~i~~~~~~~~~p~~~--~~~~~~~---~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 265 (467)
T PRK09556 200 IALIIGFIGLRYGSDSPEEL--GWGKAEE---IF----GEPISEEDK---ETESTDMTKWQIFVEYVLKN--PVIWLLCF 265 (467)
T ss_pred HHHHHHHHHHHhCCCChhhc--CCCChhh---cc----cCccchhhh---ccccccCcHHHHHHHHHHcC--hHHHHHHH
Confidence 66554 44455567776431 1111111 00 000000000 00000111111122212222 24555666
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
..++....+++...|.|.|+++ +|++..+.+. ......++.+++.++.|+++||+|||+.++....+
T Consensus 266 ~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~------------~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~ 333 (467)
T PRK09556 266 ANIFLYIVRIGIDNWSPVYAFQELGFSKEDAIN------------TFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL 333 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 6666666677788899988865 7888776444 56666778889999999999999998876655433
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
..++...+.... . .+... ..+..+..+....+..........|.+|++.|+++.|+.+..
T Consensus 334 ~~~~~~~~~~~~----~---------------~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~ 393 (467)
T PRK09556 334 ALIIFTLGVYQH----A---------------TSEYM-YLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTF 393 (467)
T ss_pred HHHHHHHHHHHh----c---------------CcHHH-HHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 333222222211 0 11112 212222222222232222234567999999999999999999
Q ss_pred HHH-HHHHHHHhHHHHhh------------hcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 320 GKA-GAIVGAFGVQYYTQ------------KGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 320 ~~~-g~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+++ |.+++|.+.|.+.+ .. +|+..|.++.++.+++.+..+++
T Consensus 394 g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 394 AYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT--GWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHhHHHHhhhHHHHhccccccccccccccc--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 997 77899999999998 33 79999999888888887776655
No 23
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.88 E-value=6.3e-21 Score=179.85 Aligned_cols=289 Identities=15% Similarity=0.120 Sum_probs=171.5
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGIL-FAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
|.....+.|++|+++|++++++++.+..+|.. .+++++..+. ...+||+.|++.++
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~-----------------------~~~gw~~~f~i~~~ 195 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA-----------------------WFNDWHAALYMPAF 195 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----------------------HhccHHHHHHHHHH
Confidence 45567889999999999999999999998864 4555443332 22479999999777
Q ss_pred HHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 PAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
+.++ .++..+++||+|+... .+++++..+ +..++.+ +.++++.+..+.+.+...++ +.++...+
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 260 (452)
T PRK11273 196 AAILVALFAFAMMRDTPQSCG--LPPIEEYKN--------DYPDDYN---EKHEQELTAKQIFMQYVLPN--KLLWYIAI 260 (452)
T ss_pred HHHHHHHHHHHHccCCHhhcC--CCChhhhhh--------ccccccc---cccCCCccHHHHHHHHHHcC--hHHHHHHH
Confidence 6555 4556667899876411 111111100 0000000 00001111122222222222 23444555
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chhHHHHH-H
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRFIIQLG-G 236 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~-~ 236 (402)
..++.....+....|.|.++++ .|++..+.+. ......++.+++.++.|+++||+ +||....+ .
T Consensus 261 ~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~------------~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~ 328 (452)
T PRK11273 261 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW------------AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF 328 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence 5555555667778899999987 6787665433 55566777788888999999999 55543222 2
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372 237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
..+..++.+.+.... . .+...... .....+....+.......+..|.+|++.|+++.|+.
T Consensus 329 ~~l~~~~~~~~~~~~-----~--------------~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 388 (452)
T PRK11273 329 MTLVTIATIVYWLNP-----A--------------GNPTVDMA-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 388 (452)
T ss_pred HHHHHHHHHHHHHhc-----c--------------cChHHHHH-HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHH
Confidence 122222222111110 0 11111111 111112212222222334567999999999999999
Q ss_pred HHHHHHHHHH-HHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 317 AAAGKAGAIV-GAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 317 ~~~~~~g~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+....+|+.+ +|.+.+.+.+.. +|+..|++.+++++++++...++
T Consensus 389 ~~~~~~g~~~~g~~v~g~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 389 GLFGYLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHH
Confidence 9999888765 799999999988 89999998888888887776655
No 24
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.88 E-value=7.3e-21 Score=176.49 Aligned_cols=293 Identities=14% Similarity=0.134 Sum_probs=180.0
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
.+....++.|++|+++|++.+++.+....+|.++++.+++.+. ...+||+.|++.++
T Consensus 100 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~~~~~~~~~~~ 156 (399)
T TIGR00893 100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL-----------------------IHFSWQWAFIIEGV 156 (399)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH-----------------------HhCCchHHHHHHHH
Confidence 3566789999999999999999999999999999999999876 56789999998877
Q ss_pred HHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 PAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
..++..+ ..+++||+|+. .+...+++. +...+... .+.++.++.+.++...++.+++ +.++....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 222 (399)
T TIGR00893 157 LGIIWGVLWLKFIPDPPQK--AKWLTEEEK-YIVVGGLL----AEQQGKGPSTPKKYQIKELLKD-------RRVWGLAL 222 (399)
T ss_pred HHHHHHHHhhheecCCCCc--cccCCHHHH-hhcchhhc----cccccccccCCCccchHHHhcC-------HHHHHHHH
Confidence 7666444 44456776542 111111111 11000000 0000000101111111111111 23444445
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHH-HHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLG-GFL 238 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~-~~~ 238 (402)
..+...........+.|.++++ .|.+..+.+. ......++.+++.++.++++||++||+..+. ...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 290 (399)
T TIGR00893 223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGF------------MASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK 290 (399)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhH------------HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 5555555666777788888765 6777665443 6666777888899999999999999962111 111
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
...++.+............ ... ....... .......+..+..+++..|.+|++.|+++.|+.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (399)
T TIGR00893 291 TAIIAGLVLSLLMFATNYV--------------NIP-YAALALV-ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINS 354 (399)
T ss_pred HHHHHHHHHHHHHHHhccc--------------hhH-HHHHHHH-HHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHH
Confidence 1111111111110000000 111 1222222 22222333567788889999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCC-chhhhHHHHHHHHHHHHHHh
Q 042372 319 AGKAGAIVGAFGVQYYTQKGDKQ-IKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 361 (402)
+..+|..++|.+.+.+.+.. + +...+.+.+++.+++.+..+
T Consensus 355 ~~~~g~~~~~~i~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 355 LGNLGGIVGPIVIGAIAATT--GSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHhhhhhhHHhhhhccCC--CchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877 5 88888888877777666554
No 25
>TIGR00895 2A0115 benzoate transport.
Probab=99.88 E-value=1e-20 Score=175.74 Aligned_cols=274 Identities=21% Similarity=0.271 Sum_probs=169.5
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++...+++.|++|+++|+++.++...+..+|.++++.+++.+. +..+||+.|++.++
T Consensus 123 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~g~~~~~~~~~~ 179 (398)
T TIGR00895 123 MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI-----------------------PVFGWRSLFYVGGI 179 (398)
T ss_pred hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh-----------------------hcccceeehhhhhh
Confidence 3567789999999999999999999999999999999998886 66789999998764
Q ss_pred HHH-HHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 PAA-LTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~-~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
..+ ..++...++||+|++... +++++..+...+....+.+++.++.++.++++....+..+....++..+..+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T TIGR00895 180 APLLLLLLLMRFLPESIDFLVS--KRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWL 257 (398)
T ss_pred HHHHHHHHHHHhCCCCChHHHh--cCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHH
Confidence 444 455556678999876432 23333333222222211111111111111111111111111111111223333444
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
..+.....++....+.|.+.++.|++....+. ......++.+++.++.++++||+|||+..... .+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~ 324 (398)
T TIGR00895 258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAAT------------GGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLG 324 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHH
Confidence 44455556667777888777778888765443 66677788889999999999999999544433 333
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.+...++.... .+..... ...+..+.+.....+...++..|.+|++.|+++.|+.+...
T Consensus 325 ~~~~~~~~~~~--------------------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 383 (398)
T TIGR00895 325 AVFAVLVGSTL--------------------FSPTLLL-LLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIG 383 (398)
T ss_pred HHHHHHHHHHh--------------------hCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 33322222211 1111222 22222222233344566788899999999999999999999
Q ss_pred HHHHHHHHHhHHHH
Q 042372 321 KAGAIVGAFGVQYY 334 (402)
Q Consensus 321 ~~g~~i~~~~~~~~ 334 (402)
.+|.+++|.+.+++
T Consensus 384 ~~g~~~g~~~~G~l 397 (398)
T TIGR00895 384 RLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHhHHhc
Confidence 99999999988865
No 26
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.87 E-value=1.3e-20 Score=175.54 Aligned_cols=282 Identities=14% Similarity=0.103 Sum_probs=172.3
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++...+++.|++|+++|+++.++.+.+..+|.++++.+++.+... ...+||+.|++.++
T Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~---------------------~~~~w~~~f~~~~~ 176 (405)
T TIGR00891 118 YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV---------------------WGDGWRALFFISIL 176 (405)
T ss_pred hHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCccHHHHHHHHHH
Confidence 355678899999999999999999999999999999999888621 12359999999887
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
+.++.++....+||+|++... ++++++..+...+..+.+.. . +...+......+. ..++++..+......
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 246 (405)
T TIGR00891 177 PIIFALWLRKNIPEAEDWKEK-HAGKALVRTMVDILYGGEHR-----I---ANIVMTLAAAMVQ-SAGKRWPTFVYLVVL 246 (405)
T ss_pred HHHHHHHHHHhCCCChhHHHH-hhhhhhhhhHHHHHhccchh-----h---hhhhhhhhHHhhh-hhhhhhHHHHHHHHH
Confidence 777777777778998776322 11111111111111110000 0 0000000000111 111222222222333
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.............+.|.++.+ .|++..+.+. ......++.+++.++.+++.||+|||+.+..+....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 247 VLFANLYSHPIQDLLPTYLKADLGLSPHTVAN------------IVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence 333333344555566777654 7888775444 666777888899999999999999999888776544
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.+........ . .+. ....+.....++...+..+....++.|.+|++.|+++.|+.+...
T Consensus 315 ~~~~~~~~~~----~----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 373 (405)
T TIGR00891 315 QLLIIPVFAI----G----------------ANV-AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLG 373 (405)
T ss_pred HHHHHHHHHh----C----------------Cch-HHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHH
Confidence 3222221111 0 111 122222122222233444556677899999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHH
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIA 348 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 348 (402)
.++..++|.+.+.+.+..+ .|...+..
T Consensus 374 ~~g~~~g~~~~g~l~~~~g-~~~~~~~~ 400 (405)
T TIGR00891 374 NLGGALAPIIGALLAQRLD-EYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHhcc-ccchhHHh
Confidence 9999999999999999873 26554443
No 27
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.87 E-value=1.7e-20 Score=179.59 Aligned_cols=291 Identities=13% Similarity=0.138 Sum_probs=170.1
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+....++.|++|+++|+++.++...+..+|.++++.+++.+. +..+||+.|++.+++
T Consensus 127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV-----------------------PVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------ccCCHHHHHHHHHHH
Confidence 445678999999999999999999999999999999999886 677999999987766
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhh-----------------
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSK----------------- 145 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 145 (402)
.++.++....+||++++...+ +++++..+........+ ......... ..........+..
T Consensus 184 ~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (496)
T PRK03893 184 IIFALWLRKNLPEAEDWKEKH-AGKAPVRTMVDILYRGE-HRIINILLT-LAAAAALWFCFAGNLQNAAIVAVLGLLCAA 260 (496)
T ss_pred HHHHHHHHHhCCCchhhhhhc-cccccchhHHHHHhcch-hHHHHHHHH-HHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 666666666788887652211 11110000000000000 000000000 0000000000000
Q ss_pred -------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 042372 146 -------EFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGY 217 (402)
Q Consensus 146 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~ 217 (402)
+...+.+..........+......+....+.|.+++ +.|++..+.+. ......++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~------------~~~~~~~~~~~g~ 328 (496)
T PRK03893 261 IFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVAN------------VLFFSGFGAAVGC 328 (496)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHH------------HHHHHHHHHHHHH
Confidence 000000001111111111111111234567788885 68888776554 6677788888999
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccce
Q 042372 218 WFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTF 297 (402)
Q Consensus 218 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (402)
++.|+++||+|||+.++.+..+..+..+.+.... ...............+...+..+...
T Consensus 329 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (496)
T PRK03893 329 CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG--------------------GANVWVLGLLLFFQQMLGQGISGLLP 388 (496)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--------------------ccHHHHHHHHHHHHHHHhcccchhhH
Confidence 9999999999999988877655444433222210 11112222222222222333344555
Q ss_pred eeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372 298 IVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN 353 (402)
Q Consensus 298 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (402)
.++.|.+|++.|++++++.+....+|+.++|.+.+.+.+.. +++..+...++..
T Consensus 389 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~--g~~~~~~~~~~~~ 442 (496)
T PRK03893 389 KLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL--DLGTALASLSFSL 442 (496)
T ss_pred HHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC--ChHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999877 7777665554443
No 28
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.87 E-value=3.2e-20 Score=176.01 Aligned_cols=290 Identities=11% Similarity=0.088 Sum_probs=179.1
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCC-cchhHHHHHhh
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGD-YLWRIVLMFGA 80 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Wr~~f~~~~ 80 (402)
+|....++.|++|+++|++++++...+..+|.++++.+++.+. .. .+||+.|++.+
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~-----------------------~~~~gw~~~f~i~~ 205 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC-----------------------ESWGGWPMIFYVFG 205 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccCCCCeehhhhh
Confidence 4677889999999999999999999999999999999999886 45 48999999988
Q ss_pred HHHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372 81 VPAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT 159 (402)
Q Consensus 81 i~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (402)
+++++..+ ...+.+|+|+. . ++..+++.+...+. .+++. +..+.+.. ++. ..++ +.++...
T Consensus 206 ~~~~~~~~~~~~~~~~~p~~--~-~~~~~~~~~~i~~~----~~~~~----~~~~~~~~----~~~-~~~~--~~~~~~~ 267 (465)
T TIGR00894 206 IVGCAWSLLWFVFPADDPSI--H-PCISKFEKKYINSS----LQGQK----GSTRQSLP----IKA-IPKS--LPVWAIW 267 (465)
T ss_pred HHHHHHHHHHHHHhcCCccc--C-CCCCHHHHHHHHhh----ccccc----CCCCCCCC----HHH-HhcC--HHHHHHH
Confidence 88776544 44456777753 1 11112211211110 00000 00000111 122 2221 2455666
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH------
Q 042372 160 STWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII------ 232 (402)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~------ 232 (402)
...++....++....|+|.++++ +|++..+.+. ...+..++.+++.+++|+++||+++|+.
T Consensus 268 ~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~ 335 (465)
T TIGR00894 268 FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGL------------LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAA 335 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 66777777788888899999876 7887775544 6667778888899999999999865421
Q ss_pred --HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372 233 --QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS 310 (402)
Q Consensus 233 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 310 (402)
+..+..........+..... . ......+..+.+. +.+..+..+..+....|..|. .+|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~g 395 (465)
T TIGR00894 336 RKIFNGIGGLGPGIFAYALPYL--S----------------AAFYLTIIILTLA-NAVSSGPLAGVLINSLDLAPR-FLG 395 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--C----------------CchHHHHHHHHHH-HHHhhhhhhhhhhchhhcChh-HHH
Confidence 11111111111111111110 0 1111222222222 222222233344455677665 899
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhhcC-CCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 311 TCHGISAAAGKAGAIVGAFGVQYYTQKGD-KQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
.+.++.+..+.++++++|.+.+.+.+... .+|...|.+.+++.+++.++..+++
T Consensus 396 ~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 396 FIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 99999999999999999999998776431 1477888888888888777666553
No 29
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.87 E-value=5.9e-20 Score=163.31 Aligned_cols=265 Identities=15% Similarity=0.125 Sum_probs=182.8
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
|+.+.++..+..||++|++++++...+..++.++|.+++.++. +.+|||..|++.++
T Consensus 119 ~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig-----------------------~~~GWR~~F~~ia~ 175 (394)
T COG2814 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG-----------------------QLFGWRATFLAIAV 175 (394)
T ss_pred HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH-----------------------HHhhHHHHHHHHHH
Confidence 3567788999999999999999999999999999999999997 78899999999888
Q ss_pred HHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 PAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
.+++.++ .+..+| |+. ..+....+. .+..+.++++ ..+....
T Consensus 176 l~ll~~~~~~~~lP--~~~--~~~~~~~~~--------------------------~~~~~~l~~p-------~v~~~l~ 218 (394)
T COG2814 176 LALLALLLLWKLLP--PSE--ISGSLPGPL--------------------------RTLLRLLRRP-------GVLLGLL 218 (394)
T ss_pred HHHHHHHHHHHhCC--Ccc--CCCCCCcch--------------------------hHHHHHhcCc-------hHHHHHH
Confidence 8887554 455688 221 101110100 0011111222 3333444
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
..++...+.|....|...++++ .|++....+. ....++++.++|+.++|++.|| +.|+.+.....+
T Consensus 219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~------------~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l 285 (394)
T COG2814 219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSL------------VLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLL 285 (394)
T ss_pred HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHH------------HHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHH
Confidence 4444445556666666555554 7888876555 7888899999999999999999 888888877777
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
..+....+.+.. ++...........++.............++ .-++.++.+.+++...
T Consensus 286 ~a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa 343 (394)
T COG2814 286 LALALLALTFTG---------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAA 343 (394)
T ss_pred HHHHHHHHHHhc---------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHH
Confidence 776666655532 112222222222222222222233333444 3357789999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.++|..+|..+.+.+.++. ++....++.++..+++.++.+..
T Consensus 344 ~nlgia~GA~lGG~v~~~~--g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 344 FNLGIALGAALGGLVLDAL--GYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 89999999888888888777654
No 30
>PRK03545 putative arabinose transporter; Provisional
Probab=99.87 E-value=7.5e-20 Score=169.47 Aligned_cols=262 Identities=12% Similarity=0.081 Sum_probs=169.0
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|...+++.|++|+++|++++++...+..+|.++++.+++.+. +..|||+.|++.++.
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~-----------------------~~~gw~~~f~~~~~~ 172 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG-----------------------QYLGWRTTFLAIGGG 172 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH-----------------------HHhcHHHHHHHHHHH
Confidence 456688999999999999999999999999999999999886 567899999998877
Q ss_pred HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
+++..+ ...++||.|+. +++..+ ...+.++++ .++.....
T Consensus 173 ~~l~~~~~~~~~~~~~~~----~~~~~~----------------------------~~~~~~~~~-------~~~~~~~~ 213 (390)
T PRK03545 173 ALITLLLLIKLLPLLPSE----HSGSLK----------------------------SLPLLFRRP-------ALVSLYLL 213 (390)
T ss_pred HHHHHHHHHHhCCCCCCC----CcchHH----------------------------HHHHHHhCc-------HHHHHHHH
Confidence 666443 34456765421 110000 000111111 12222222
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.++.....+....+.+.++++ .|.+....+. ......++.+++.++.++++||++||.... +..+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~------------~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~ 280 (390)
T PRK03545 214 TVVVVTAHFTAYSYIEPFVQQVAGLSENFATL------------LLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALL 280 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHH------------HHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHH
Confidence 222233334444555556555 6777665443 566667788889999999999999886544 33333
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.++...+.... .+.+... ...+..+.+.....+.......+..| +.|+++.|+.+...
T Consensus 281 ~~~~~~l~~~~--------------------~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~ 338 (390)
T PRK03545 281 LVCLLLLLPAA--------------------NSEWHLS-VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIF 338 (390)
T ss_pred HHHHHHHHHHh--------------------chHHHHH-HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 33332222110 1122222 22222222233333344455667766 57899999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.+|..+||.+.+.+.+.. +++..+.+.+++.+++.++.+..
T Consensus 339 ~~g~~~G~~~~G~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 339 NIGIGAGALLGNQVSLHL--GLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 89999999888888887776654
No 31
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.86 E-value=3e-20 Score=172.31 Aligned_cols=275 Identities=18% Similarity=0.166 Sum_probs=172.7
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++...+++.|++|+++|++..++.+.+..+|.++++.++..+.....+. ....++||+.|++.++
T Consensus 114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~---------------~~~~~~w~~~~~~~~~ 178 (394)
T TIGR00883 114 WGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD---------------ALLEWGWRIPFLVSAV 178 (394)
T ss_pred ccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------------HhhccchHHHHHHHHH
Confidence 4667889999999999999999999999999999999887765322110 1145789999999887
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
..++..+....+||+|++... ++++ ++.+...++ ..+++++.++.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~--~~~~------------------------~~~~~~~~~-----~~~~~~~~~~~~~~~ 227 (394)
T TIGR00883 179 LVLIGLYLRRNLEETPVFEKA--QEKH------------------------KKKRGPIRE-----TLTKHRKPFLLGLGL 227 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHH--Hhcc------------------------ccccCCHHH-----HHHhchHHHHHHHHH
Confidence 777766666677887654211 0000 000111111 112222234444445
Q ss_pred HHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.+.....++....+.|.+.+ +.|.+..+.+. ......++.+++.++.|+++||+|||+.+.....+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 295 (394)
T TIGR00883 228 VIATTTTFYLITTYLPTYLTQTLGLSANSALL------------VLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 55555566677778888884 47777665433 556667777888889999999999999877554443
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH-HH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA-AA 319 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~ 319 (402)
.+.......... . . ... ..........+++.....+...++..|.+|++.|+++.++.+ ..
T Consensus 296 ~~~~~~~~~~~~--~-~--------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 357 (394)
T TIGR00883 296 ALLAVPLLMALL--D-S--------------GSF-TLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLA 357 (394)
T ss_pred HHHHHHHHHHHh--c-C--------------Cch-HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhH
Confidence 333221111110 0 0 111 222222222222233334556778899999999999999854 44
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN 353 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (402)
..+|..++|.+.+.+.+..+ .|+..++...+..
T Consensus 358 ~~~g~~~~p~~~g~l~~~~g-~~~~~~~~~~~~~ 390 (394)
T TIGR00883 358 GAIFGGFAPYIAAALVAMTG-DWYAIGYYLAALA 390 (394)
T ss_pred HHHHhhHHHHHHHHHHHHcC-cchhHHHHHHHHH
Confidence 56788899999999998873 2666555544443
No 32
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.86 E-value=7.7e-20 Score=175.71 Aligned_cols=304 Identities=21% Similarity=0.261 Sum_probs=199.4
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
.++..+++|+.++++|+.++.+ ......|..+++..++++. . +||+.+++..++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-----------------------~--~Wr~~~~~~~~~ 243 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-----------------------R--DWRWLFWIISIP 243 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-----------------------h--hHHHHHHHHHHH
Confidence 4567889999999999999999 6666666666777776665 2 699999999999
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccc---ccc--ccC---CCCC----CCCCCcccccchhhHHhhh
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTD---INV--ATS---AYPA----PVSPEASTYGLFSKEFVQK 150 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~---~~~--~~~---~~~~----~~~~~~~~~~~~~~~~~~~ 150 (402)
+++.++.+++.||||||+.. +++.+++.+.+++..+.| ... ..+ ..++ ..+++....++++.+..++
T Consensus 244 ~~~~~~~~~l~~Es~rwl~~-~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 322 (521)
T KOG0255|consen 244 SGLFLLLWFLPPESPRWLLS-KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRY 322 (521)
T ss_pred HHHHHHHHHccCcChHHHHH-cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHH
Confidence 99877777777899999865 566677777777654332 100 000 0000 0112234455555554433
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh
Q 042372 151 HGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF 230 (402)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr 230 (402)
..+...+.++.....+|+....... +|.+... ..........++....+...|++|||
T Consensus 323 ---~~~~~~~~~~~~~~~y~gl~~~~~~----lg~~~~~---------------~~~~~~~~~~p~~~~~~~~~~~~gR~ 380 (521)
T KOG0255|consen 323 ---RTLYLLFIWFVFSLVYYGLSLNVSG----LGGNIYL---------------NFTLSGLVELPAYFRNGLLLPEFGRR 380 (521)
T ss_pred ---HHHHHHHHHHHHhHHHHhhhhhhhh----cCchHHH---------------HHHHHHHHHhhHHHHHHHHHHHhCcH
Confidence 4566666666666677766554433 3333221 23333336666777778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372 231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS 310 (402)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 310 (402)
.....+..+..++++..++.... ........+..+..++...+.. ..+.+.+|++|+..|.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 381 PPLFLSLFLAGIGLLLFGWLPDD------------------LGGWLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRN 441 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc------------------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHH
Confidence 99999998888888877775331 1101223333333333334444 4478899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH-hhcccCCCCCcccccch
Q 042372 311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS-FMVPETNGLSLEELSGE 377 (402)
Q Consensus 311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~et~~~~~~~~~~~ 377 (402)
.+.+......+++++++|.+....... .....+.+++....+..++. .++|||+++.+.+..++
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQM---FPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh---cccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence 999999999999999999888666553 22233333455555555555 67799999988654443
No 33
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.85 E-value=8.7e-20 Score=171.47 Aligned_cols=297 Identities=14% Similarity=0.144 Sum_probs=175.2
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+....++.|++|+++|++++++.+.+..+|..+++.+.+.... ...+||..|++.+++
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~----------------------~~~~w~~~f~~~~~~ 194 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA----------------------WFNDWHAALYFPAIC 194 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH----------------------HhhhhHHHHHHHHHH
Confidence 4556788999999999999999999999999998877665431 345899999998777
Q ss_pred HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++ .++..+++||+|+.. +.++.+.. +.+..++..+ + .+++.+..+.+.+...++ +.++.....
T Consensus 195 ~~i~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 259 (438)
T TIGR00712 195 AIIVALFAFAMMRDTPQSC---GLPPIEEY-------RNDYPDDYNE--K-AEQELTAKEIFMQYVLPN--KLLWYIAIA 259 (438)
T ss_pred HHHHHHHHHHhccCCHHhc---CCCCchhc-------cccccccccc--c-cccccchHHHHHHHHccC--chHHHHHHH
Confidence 665 445566788887541 11111100 0000000000 0 000111112222222222 234444444
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.++.....++...|.|.++++ .|+++...+. ...+..++.+++.+++|+++||+++++....+....
T Consensus 260 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~ 327 (438)
T TIGR00712 260 NVFVYLLRYGVLDWSPTYLKEVKHFALDKSSW------------AYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFM 327 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHccCCChhhHHH------------HHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHH
Confidence 444455567777889999887 6877765443 566677778888899999999996443222232222
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.+..+...... .... .+.+.... ..+..+....+..........|.+|++.|+++.|+.+...
T Consensus 328 ~~~~~~~~~~~--~~~~--------------~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 390 (438)
T TIGR00712 328 TLVTIAVIVYW--MNPA--------------GNPLVDMI-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 390 (438)
T ss_pred HHHHHHHHHHH--hcCC--------------CchHHHHH-HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHH
Confidence 21111111110 0000 11111111 1111122222222222234679999999999999999998
Q ss_pred HHHH-HHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372 321 KAGA-IVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETN 367 (402)
Q Consensus 321 ~~g~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~ 367 (402)
++++ +++|.+.+.+.+.. +|...+.+.++..+++.+..+++ ||.|
T Consensus 391 ~~gg~~~gp~l~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 391 YLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HhhhhhhcchhHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8875 68999999999987 78888888888777777776655 6654
No 34
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.85 E-value=2.3e-19 Score=170.22 Aligned_cols=276 Identities=12% Similarity=0.052 Sum_probs=174.6
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCC-CcchhHHHHHhhHH
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQG-DYLWRIVLMFGAVP 82 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Wr~~f~~~~i~ 82 (402)
...+++.|++|+++|+++.++...+..+|.++++.++..+. + ..|||..|++.++.
T Consensus 127 ~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~-----------------------~~~~GWr~~f~i~a~l 183 (491)
T PRK11010 127 VFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA-----------------------DRYLGWQGMYWLMAAL 183 (491)
T ss_pred HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hcccCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999998886 4 46899999998887
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
.++..+..+++||+++. . ++++... + ...+.+++ .++++. .+......
T Consensus 184 ~ll~~l~~~~~~e~~~~--~-~~~~~~~-~-------------------------~~~~~l~~-~~~~~~--~~~~ll~~ 231 (491)
T PRK11010 184 LIPCIIATLLAPEPTDT--I-PVPKTLE-Q-------------------------AVVAPLRD-FFGRNN--AWLILLLI 231 (491)
T ss_pred HHHHHHHHHhcCCCccc--c-ccccchh-h-------------------------hHHHHHHH-HHcCcC--HHHHHHHH
Confidence 77766666678887542 1 1000000 0 00000111 111111 11111111
Q ss_pred HHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHH-HHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMF-LVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
+......+....+.+.++ ++.|++..+.+. .. ....++.++|.+++|+++||+|+|+.+.++.++.
T Consensus 232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~------------~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~ 299 (491)
T PRK11010 232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGL------------VNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ 299 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 222222333334445554 458888876443 43 4556788889999999999999988877665544
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
++....+..... .. .+.........+.....+.+. +..+++..+..|++.+++..++.+...
T Consensus 300 ~l~~l~~~~l~~--~~---------------~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~ 361 (491)
T PRK11010 300 GVSNAGYWLLSI--TD---------------KNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALS 361 (491)
T ss_pred HHHHHHHHHHHh--cc---------------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 444333222111 00 111111111111111111111 234566678889889999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPET 366 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et 366 (402)
.+|..+++.+.|.+.+.. ||+..|.+.+++.+++.+..++++++
T Consensus 362 ~lg~~~~~~~~G~l~~~~--G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 362 AVGRVYVGPVAGWFVEAH--GWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998888999999987 89999999999988888877776554
No 35
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.85 E-value=4.3e-20 Score=171.06 Aligned_cols=289 Identities=13% Similarity=0.155 Sum_probs=195.5
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
+|+...+.+.|+|++||++..++..++..+|.+++.++++.+.. ...||+.+|++.++
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~----------------------s~~GW~sifY~~g~ 203 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE----------------------SSLGWPSIFYVFGI 203 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc----------------------cCCCCchHHHHHHH
Confidence 67888999999999999999999999999999999999999971 34899999999888
Q ss_pred HHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 PAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
.+++..+ +.++..|+|.. ++.-.+++++.+.+... +.+..+..+.+.+++++. +.++.+.+
T Consensus 204 ~g~i~~~~w~~~~~d~P~~---h~~is~~El~~I~~~k~--------~~~~~~~~~vP~~~i~ts-------~~vwai~~ 265 (466)
T KOG2532|consen 204 VGLIWFILWFLFYSDSPSK---HPNISEKELKYIEKGKS--------EAHVKKKPPVPYKAILTS-------PPVWAIWI 265 (466)
T ss_pred HHHHHHHHHHHHhcCCccc---CCCCCHHHHHHHHhccc--------ccccCCCCCCCHHHHHcC-------HHHHHHHH
Confidence 8887554 45557788864 12222333333322110 000000012233333333 37888999
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch---------h
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR---------F 230 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr---------r 230 (402)
..++...+++.+..|+|.|+++ ++++..+.+. ..++..+...+..+++|.++||+.+ |
T Consensus 266 ~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~------------~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk 333 (466)
T KOG2532|consen 266 SAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGF------------LSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK 333 (466)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence 9999999999999999999998 8898887666 8888888899999999999998854 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372 231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS 310 (402)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 310 (402)
..-.++..+.+++++.+++... ...+..++++.+...+.+. ..+..+.-..+. .+++-+
T Consensus 334 ifn~i~~~~~ai~l~~l~~~~~-------------------~~~~~a~~~l~~~~~~~g~-~~~Gf~~~~~~~-apq~a~ 392 (466)
T KOG2532|consen 334 IFNTIAFGGPAVFLLVLAFTSD-------------------EHRLLAVILLTIAIGLSGF-NISGFYKNHQDI-APQHAG 392 (466)
T ss_pred HHHhHHHHHHHHHHHeeeecCC-------------------CcchHHHHHHHHHHHHccc-chhhhHhhhhhc-cchHHH
Confidence 3334444444444444444311 1111222222222222111 111122122233 456779
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhh-hcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 311 TCHGISAAAGKAGAIVGAFGVQYYTQ-KGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 311 ~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
..+|+.+.+..+.++++|.+.+.+.. .....|+.+|++.+++.+++.++..++
T Consensus 393 ~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 393 FVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 99999999999999999999998884 211289999999999999888766655
No 36
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.84 E-value=2.7e-19 Score=165.82 Aligned_cols=266 Identities=11% Similarity=0.079 Sum_probs=162.0
Q ss_pred CchhHHhhhhccccch--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 3 PLSAVIMSEYANKRTR--GAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~r--g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
|....++.|+.+++.| +...++.+.+.++|.++++.+++.+. +..|||..|++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~-----------------------~~~gw~~~f~~~~ 180 (393)
T PRK15011 124 PQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA-----------------------MGFSFTVMYLSAA 180 (393)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------------HhcChHHHHHHHH
Confidence 3455667777766655 45567888899999999999999987 5678999999988
Q ss_pred HHHHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372 81 VPAALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT 159 (402)
Q Consensus 81 i~~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (402)
+..++. ++..+++||.|+. ++..++ +.+. . ++ .++ ..+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~~----~-------~~--~~~---~~~~~~ 222 (393)
T PRK15011 181 VAFIVCGVMVWLFLPSMRKE----LPLATG------------------TLEA----P-------RR--NRR---DTLLLF 222 (393)
T ss_pred HHHHHHHHHHHhhcCccCCC----Cccccc------------------cccc----c-------cc--ccc---cHHHHH
Confidence 776654 4445567886531 110000 0000 0 00 001 011111
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372 160 STWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
...+.....++....+.|.++++ +++++.+.+. ......++.+++.++.|+++||+|||+.+..+..
T Consensus 223 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~------------~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~ 290 (393)
T PRK15011 223 VICTLMWGTNSLYIINMPLFIINELHLPEKLAGV------------MMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAV 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 11122222333444567777754 7777765443 4444455667788899999999999998776654
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
...+........ .+.+.......+....... ..+....+..|.+|++ |+++.++.+.
T Consensus 291 ~~~~~~~~~~~~---------------------~~~~~~l~~~~l~~~~~g~-~~~~~~~~~~~~~p~~-~g~~~~~~~~ 347 (393)
T PRK15011 291 AGVCFYAGMLMA---------------------HSPAILLGLQLLNAIYIGI-LGGIGMLYFQDLMPGQ-AGSATTLYTN 347 (393)
T ss_pred HHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCC-cchHHHHHHH
Confidence 443332222111 1111222111111111111 1112234557888864 8999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372 319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPET 366 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et 366 (402)
...+|..+++.+.+.+.+.. +|+..+.+.+++.+++.+..+++||+
T Consensus 348 ~~~lg~~~g~~l~G~i~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T PRK15011 348 TSRVGWIIAGSLAGIVAEIW--NYHAVFWFALVMIIATLFCLLRIKDV 393 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999877 88888888888888888777776653
No 37
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.84 E-value=6.2e-19 Score=163.97 Aligned_cols=265 Identities=12% Similarity=-0.025 Sum_probs=169.3
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|+.|+++|++++++.+.+..+|.++++.+++.+. ...|||+.+++.++.
T Consensus 131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~-----------------------~~~g~~~~~~~~~~~ 187 (399)
T PRK05122 131 TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY-----------------------HWGGLAGLGLLIMLL 187 (399)
T ss_pred chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH-----------------------HcccHHHHHHHHHHH
Confidence 455677899999999999999999999999999999999887 667899998887666
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
.++.++.....|+++. ++++ +.+..+. .++.+.... ..
T Consensus 188 ~~~~~~~~~~~~~~~~-----~~~~----------------------------~~~~~~~-----~~~~~~~~~----~~ 225 (399)
T PRK05122 188 ALLGLLLARPRPAVPP-----VKGE----------------------------RLPFRRV-----LGRVWPYGM----GL 225 (399)
T ss_pred HHHHHHHHhcCCCCCC-----CCcc----------------------------chhHHHH-----HHHHHHHHH----HH
Confidence 5554443333333221 0000 0000001 111111111 11
Q ss_pred HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI 242 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~ 242 (402)
......+.....+.+.+..+.+++.. +. ......++.+++.++.+++.||+|||+.+..+..+..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 291 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAARGWDGA--AL------------ALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEIL 291 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccc--hH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11222333444556666666555221 11 33445566777888899999999999988877766666
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA 322 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 322 (402)
+.+++... .+.+.... ..+..+++.....+.......|.+|++.|+++.++.+....+
T Consensus 292 ~~~~~~~~---------------------~~~~~~~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 349 (399)
T PRK05122 292 GLLLLWLA---------------------PSPWMALI-GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDL 349 (399)
T ss_pred HHHHHHHh---------------------ccHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 65544432 12222222 222222222223334445567889999999999999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCC
Q 042372 323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLS 370 (402)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~ 370 (402)
|..+++.+.+.+.+.. +|+..+++.+++.+++.++.+++++.++++
T Consensus 350 g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 350 SLGITGPLAGLVASWF--GYPSIFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999998877 889999988888888877777665544433
No 38
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.84 E-value=8.8e-20 Score=171.87 Aligned_cols=285 Identities=12% Similarity=0.051 Sum_probs=168.5
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA 83 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~ 83 (402)
...+++.++++ ++|+++.++.+.+..+|..+++.+++.+. +.+|||+.|++.+++.
T Consensus 128 ~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~-----------------------~~~gwr~~f~~~~~~~ 183 (455)
T TIGR00892 128 PSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF-----------------------ESFGWRGSFLILGGLL 183 (455)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH-----------------------HHhChHHHHHHHHHHH
Confidence 44567788885 78999999999999999999999998887 5678999999988776
Q ss_pred HHHHHHHhhc-CCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 84 ALTYYWRMKM-PETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 84 ~~~~~~~~~l-pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
++..+..+++ ++.+.. +..+++..+ ....... .++.+. ....+...+....+.+++ +.++......
T Consensus 184 ~~~~v~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 250 (455)
T TIGR00892 184 LHCCVCGALMRPVGPSQ----RVSKSKSKE---GLPPDGS---TKKLSK-KSTAEKINRFLDFSLFTH--RGFLVYLSGN 250 (455)
T ss_pred HHHHHHHHHhCCCCccc----ccccccccc---cCCCCCc---cccccc-cchhhhhhhhcchHHhcC--chHHHHHHHH
Confidence 6554444343 322211 000000000 0000000 000000 000000011111112222 2333443444
Q ss_pred HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chhHHHHHHH--H
Q 042372 163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRFIIQLGGF--L 238 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~--~ 238 (402)
+.....++....++|.+.++.|++....+. ...+..++.+++.++.++++||. ++|+....+. +
T Consensus 251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 318 (455)
T TIGR00892 251 VIMFLGFFAPIIFLVPYAKDKGVDEYEAAF------------LLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL 318 (455)
T ss_pred HHHHHHccchHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence 444555666667788888888888775544 66667777888888899999973 3443333322 2
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
..+++.++.... .+.+.+ .+..+..+.......+...++..|.+|++.++++.|+.+.
T Consensus 319 ~~~l~~ll~~~~---------------------~~~~~~-~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 376 (455)
T TIGR00892 319 FNGLTHLLCALA---------------------GDYTGL-VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTI 376 (455)
T ss_pred HHHHHHHHHHHh---------------------chHHHH-HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHH
Confidence 222222222111 222222 2223333333334445566778899999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372 319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS 360 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (402)
...+|.+++|.+.+.+.+..+ +|+..|++.+++.+++.+..
T Consensus 377 ~~~lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 377 VECCAVLIGPPLAGRLVDATK-NYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHHHHHHccccceeeeehhcC-CcchHHHHhhHHHHHHHHHH
Confidence 999999999999999888764 58888888877776665543
No 39
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.84 E-value=1.2e-18 Score=161.45 Aligned_cols=270 Identities=7% Similarity=-0.017 Sum_probs=175.5
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCC-cchhHHHHHhhH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGD-YLWRIVLMFGAV 81 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Wr~~f~~~~i 81 (402)
+....++.|++| ++|+++++.+..+..+|..+++.++..+. +. .+||..+.+.++
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~-----------------------~~~~~w~~~~~~~~~ 171 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV-----------------------QHSETWYQTLAWWAL 171 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhcCCHHHHHHHHHH
Confidence 456678899986 78999999999999999999999988876 33 479998877665
Q ss_pred HHHHHHHHHhhcC-CCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 PAALTYYWRMKMP-ETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~~~~~~~~~lp-esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
..++.++..+... +.|+ ++++ + +....+.+++ + ..+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~-------~~~~------------------~-------~~~~~~~l~~----~---~~~~l~~ 212 (393)
T PRK09705 172 PAVVALFAWWWQSAREVA-------SSHK------------------T-------TTTPVRVVFT----P---RAWTLGV 212 (393)
T ss_pred HHHHHHHHHHHHhcCCCc-------cccC------------------C-------CcCCcccccC----H---hHHHHHH
Confidence 5554433332221 1110 0000 0 0000111111 1 1223333
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
..+.....++....+.|.++++.|++..+.+. ...+..++.+++.++.+++.||++||+.+.++..+.
T Consensus 213 ~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~------------~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~ 280 (393)
T PRK09705 213 YFGLINGGYASLIAWLPAFYIEIGASAQYSGS------------LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ 280 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhH------------HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 34444556677888889998888888775544 677788889999999999999999999888876665
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhhhHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRSTCHGISAAA 319 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~ 319 (402)
.++..++.... .+.... ... + .+.+.....+.......+.. |++.|++..++.+..
T Consensus 281 ~~~~~~~~~~~--------------------~~~~~~-~~~-l-~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 337 (393)
T PRK09705 281 LVGFCGFIWLP--------------------LQLPVL-WAM-V-CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGI 337 (393)
T ss_pred HHHHHHHHHcc--------------------chHHHH-HHH-H-HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 55544333211 111111 111 1 12222233344444455666 467899999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCCCCc
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNGLSL 371 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~~~~ 371 (402)
..++..++|.+.+++.+..+ ++...|.+.+++.++..+..+.+ ||++++..
T Consensus 338 ~~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 338 GFIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 99999999999999999875 57777888777777666665544 88876654
No 40
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.84 E-value=4.7e-19 Score=163.31 Aligned_cols=264 Identities=12% Similarity=0.040 Sum_probs=165.6
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA 83 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~ 83 (402)
....++.|++| ++|+++.++...+.++|.++++.+...+. +..+||+.|++.++..
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~f~~~~~~~ 166 (377)
T TIGR00890 111 IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI-----------------------NLEGVPAAFIYMGIIF 166 (377)
T ss_pred hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH-----------------------hcccHHHHHHHHHHHH
Confidence 44566788886 67999999999999999887766666554 5568999999988777
Q ss_pred HHHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 84 ALTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 84 ~~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
++..+. .++++|+|+. . ++++++ . ++++...++.+++ + ..+......
T Consensus 167 ~~~~~~~~~~~~~~~~~--~-~~~~~~-------------------~---~~~~~~~~~~~~~----~---~~~~~~~~~ 214 (377)
T TIGR00890 167 LLVIVLGAFLIGYPPGQ--L-IKTNIE-------------------V---SVKDYTVWEMLRT----P---QFWVLYLSF 214 (377)
T ss_pred HHHHHHHHHheecCchh--c-cccCcc-------------------c---chhhhhHHHHHcC----c---cHHHHHHHH
Confidence 665443 4445554321 0 000000 0 0000011111111 1 122222222
Q ss_pred HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI 242 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~ 242 (402)
+...........+.+.+.++.+.+..+.+. ......++.+++.++.|++.||+|||+.+..+..+..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 215 FLNAVSGLLLIGLYKPYGQSLGLSDGFLVL------------AVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAV 282 (377)
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 222223333334455566677776654333 66677788888999999999999999998888777666
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA 322 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 322 (402)
+.+.+..... ... ..........+.......+....+..|.+|++.|+++.|+.+....+
T Consensus 283 ~~~~~~~~~~-------------------~~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 342 (377)
T TIGR00890 283 GMAAMLFIPM-------------------LND-VLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAV 342 (377)
T ss_pred HHHHHHHccc-------------------chh-HHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHH
Confidence 6555443210 111 11111112222222233344456778999999999999999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHH
Q 042372 323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGF 357 (402)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (402)
|..++|.+.+.+.+.. +|+..|.+.+++.+++.
T Consensus 343 g~~~~~~~~g~l~~~~--g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 343 AGIFGGLIASHALTEI--GFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHhhh--chhhHHHHHHHHHHHhc
Confidence 9999999999998877 88888888877776654
No 41
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.83 E-value=6.6e-19 Score=166.83 Aligned_cols=281 Identities=12% Similarity=0.029 Sum_probs=155.6
Q ss_pred hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
...+++|++|+++||+++++......+|..+++.+...+....... ...+..|||+.|++.+++++
T Consensus 144 ~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~--------------~~~~~~gWr~~f~i~g~l~l 209 (476)
T PLN00028 144 CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA--------------GAPSFTAWRIAFFVPGLLHI 209 (476)
T ss_pred HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCcchhhhHHHHHHHHHHHH
Confidence 3457899999999999999998877788877776665543221110 00023589999999888776
Q ss_pred HHHHHHhhcC-CCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 85 LTYYWRMKMP-ETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 85 ~~~~~~~~lp-esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
+..+..++++ +.|+. +.++. .+ +. +.++....+.++.. .+. +.++...+.++
T Consensus 210 ~~~l~~~~~~~~~p~~------~~~~~----~~-----------~~---~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ 262 (476)
T PLN00028 210 IMGILVLTLGQDLPDG------NYREL----KK-----------SG---TMPKDSFSKVLRYG-VTN--YRTWILALTYG 262 (476)
T ss_pred HHHHHHHHHcCcCCCC------chhhH----Hh-----------cC---ccccccHHHHHHHH-HcC--chhHHHHHHHH
Confidence 6554444444 43421 10000 00 00 00000111111111 111 12333333333
Q ss_pred HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH-------HHHH
Q 042372 164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI-------IQLG 235 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-------~~~~ 235 (402)
......+....+.|.++.+ .|++....+. ...+..++.+++.+++|+++||++||+ ...+
T Consensus 263 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~------------~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~ 330 (476)
T PLN00028 263 YSFGVELTMDNIIAEYFYDRFGLSLETAGA------------IAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWI 330 (476)
T ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHH
Confidence 3334445556677777654 6888775444 677778888899999999999998762 2222
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHH
Q 042372 236 GFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGI 315 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 315 (402)
..++.+++.+++... .+.......+.+. .++.....+..+.+..++.| +.|++..|+
T Consensus 331 ~~~l~~i~~~~~~~~---------------------~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~ 387 (476)
T PLN00028 331 VQTLGGVFCIWLGRA---------------------NSLGAAIVVMILF-SIFVQAACGATFGIVPFVSR-RSLGVISGL 387 (476)
T ss_pred HHHHHHHHHHHhccc---------------------chHHHHHHHHHHH-HHHHHHhhhhhcccCcccCh-hhchhhhhh
Confidence 222211211111110 1111111111111 11111222345555667655 689999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 316 SAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 316 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
.+..+.+|+++++.+.+. .+.. +|...|.+.+++.+++.++.++++
T Consensus 388 ~~~~g~lg~~i~~~l~~~-~~~~--~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 388 TGAGGNVGAVLTQLLFFT-GSSY--STETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhccccHHHHHHHHHHHh-cCCc--cHhhHHHHHHHHHHHHHHHHHhee
Confidence 988887777777766541 1111 688899998888888888777663
No 42
>PRK03699 putative transporter; Provisional
Probab=99.83 E-value=4.8e-19 Score=164.23 Aligned_cols=270 Identities=10% Similarity=0.053 Sum_probs=174.0
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++....++.|++|+++|++.++..+....+|..+++.+.+.+.. ...+||+.|.+.++
T Consensus 113 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------------------~~~gw~~~f~~~~~ 170 (394)
T PRK03699 113 MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA----------------------RSIEWYWVYACIGL 170 (394)
T ss_pred ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------ccccHHHHHHHHHH
Confidence 35567889999999999999999988889999999988777641 34689999998777
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
+.++..++.++ .+.|+. . ++++++ +. + .. +.. .+ +.++.....
T Consensus 171 ~~~~~~~~~~~-~~~p~~--~-~~~~~~------------------~~-~---~~-------~~~-~~---~~~~~~~~~ 213 (394)
T PRK03699 171 VYVAIFILTLF-SEFPAL--G-KHAPKA------------------DK-P---VA-------KEK-WG---IGVLFLAIA 213 (394)
T ss_pred HHHHHHHHHHh-cCCccc--c-ccCccc------------------cC-c---cc-------ccc-CC---hHHHHHHHH
Confidence 76655443332 222221 0 000000 00 0 00 000 01 123334444
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.++....++....|.|.++++ .|++..+.+. ......++.+++.++.++++||++||+.+.....+.
T Consensus 214 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~ 281 (394)
T PRK03699 214 ALLYILAQLTFISWVPEYAQKKFGMSLEDAGN------------LVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLA 281 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHhhH------------HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 445555667778899999965 7888775544 566667778889999999999999999888766555
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.+...++... .+...... ..+..++...+..+...++..|..|. .++...+......
T Consensus 282 ~~~~~~~~~~---------------------~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~ 338 (394)
T PRK03699 282 LVLMYLFVNT---------------------DDPSHLLY-AILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCG 338 (394)
T ss_pred HHHHHHHHHc---------------------CCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhh
Confidence 4443333221 11112222 22222222333344444555666664 3567788888899
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
.+|..++|.+.+++.+.. +++..+++.+++.+++.+....++++.
T Consensus 339 ~~g~~i~p~~~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (394)
T PRK03699 339 TIGTMLTFVVTSPIVAHF--GLQAALLTANGLYAVVFVMCILLGFVS 383 (394)
T ss_pred hHHHHHHHHHHHHHHHHh--CchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 888888888888877777666665443
No 43
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.83 E-value=8.1e-19 Score=161.81 Aligned_cols=265 Identities=15% Similarity=0.132 Sum_probs=163.2
Q ss_pred CchhHHhhhhccccchhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 3 PLSAVIMSEYANKRTRGAF--IAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~--~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
|...+++.|+.|+++|++. .+....+.++|.++++.+++.+. +..+||+.|++.+
T Consensus 106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~-----------------------~~~~~~~~f~~~~ 162 (375)
T TIGR00899 106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA-----------------------LGFGFTVMFLTAA 162 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH-----------------------HhcccHHHHHHHH
Confidence 4456677888888777754 57778888999999999999887 5678999999988
Q ss_pred HHHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372 81 VPAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT 159 (402)
Q Consensus 81 i~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (402)
+..++..+ ..+++||+|+.. +++ ++ +...++.++++ ..+......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~--------------------------~~~~~~~~~~~----~~~~~~~~~ 208 (375)
T TIGR00899 163 LAFVLCGVLVWLFLPSYPRGA---PGA-LT--------------------------RLEVRGLLASR----DTRLLFVAC 208 (375)
T ss_pred HHHHHHHHHHHHhCCCcccCc---ccc-cC--------------------------cchhhhhhcCc----chHHHHHHH
Confidence 87665544 445589876531 100 00 00000011111 111111111
Q ss_pred HHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372 160 STWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
+...........+.|.+++ +.|.++.+.+. ......+..+++.++.|++.||+|||+.+.++.+
T Consensus 209 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~ 273 (375)
T TIGR00899 209 ---TLMWGCNILYIINMPLLIIHELGLPDKLAGL------------MMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAAL 273 (375)
T ss_pred ---HHHHHHHHHHHhhhHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHH
Confidence 1111122233344566654 46777665433 3344445556677789999999999998877765
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
+..+....+... ++.+..... ....+++.....+....+..|..|++ |+++.++.+.
T Consensus 274 ~~~~~~~~~~~~---------------------~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 330 (375)
T TIGR00899 274 AGVAFYTGLAAD---------------------NSLWALLML-QLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTN 330 (375)
T ss_pred HHHHHHHHHHHH---------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHH
Confidence 544433322221 112222222 22212211222344556678888865 5699999999
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
..++|..++|.+.+.+.+.. +|+..+++.+++.+++.++..+++
T Consensus 331 ~~~~g~~~g~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 331 TGRVGWIIAGSVGGILAERW--SYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHheec
Confidence 99999999999999998877 888999988888888777766554
No 44
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.3e-18 Score=153.05 Aligned_cols=274 Identities=15% Similarity=0.197 Sum_probs=198.7
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcc---hhHHHHH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYL---WRIVLMF 78 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Wr~~f~~ 78 (402)
++++..++++++||+++|.++|+.. ..++|..+...++..+. ...+ ||....+
T Consensus 122 Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~-----------------------~~~g~~~w~~~~~i 177 (417)
T COG2223 122 FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA-----------------------VAFGFLAWRNVAGI 177 (417)
T ss_pred ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH-----------------------HHHhhHHHHHHHHH
Confidence 5678899999999999999999999 88999999999998887 4445 9999888
Q ss_pred hhHHHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHH
Q 042372 79 GAVPAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLG 157 (402)
Q Consensus 79 ~~i~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (402)
-.++.++ .+..++.+.|.|... ...++.+. . -++....+ +..|.
T Consensus 178 ~~~~l~v~~v~~~~~~~d~p~~r--~~~~~~~~-~-----------------------------~~~~v~~~---~~~W~ 222 (417)
T COG2223 178 YVVALAIAAVLAWLGMNDVPEHR--ASVKPQLP-A-----------------------------QLKAVFSN---KDTWL 222 (417)
T ss_pred HHHHHHHHHHHHHHHhCCChhhh--ccccccch-h-----------------------------HHHHHhcC---cchHH
Confidence 7776666 455566677776531 01111100 0 00111111 25666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372 158 TTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG 236 (402)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~ 236 (402)
+++.++.....+.++..++|.|+++ +|.++.+++. ......+...+..+.+|+++||+|.++.+.+.
T Consensus 223 lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~------------~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~ 290 (417)
T COG2223 223 LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGL------------IAFLFPLIGALARPLGGWLSDRIGGRRVTLAV 290 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHH------------HHHHHHHHHHHHHhccchhhhhccchhHHHHH
Confidence 7777777777888889999999886 8998887654 66666677777788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372 237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
+.+++++..++........+. .+.......+.....+.+.+ ....+.++..++|.+ -|...|+.
T Consensus 291 f~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~l~l~~~~G~G-nGsvfk~Ip~if~~~-~G~v~G~v 354 (417)
T COG2223 291 FVGMALAAALLSLFLTGFGHG--------------GSFVVFVAVFLALFVFAGLG-NGSVFKMIPVIFPKE-TGAVTGIV 354 (417)
T ss_pred HHHHHHHHHHHHccccccccC--------------cchHHHHHHHHHHHHHhccC-cchheeechHHHHhh-hhHHHHHH
Confidence 888888887776653221111 22223333333333333334 346677888888864 58889999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
..++.+|++.-|...+...+.++ .+...|+++..+.+++.+..+.+
T Consensus 355 ga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 355 GAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886 68899999999999988887755
No 45
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.82 E-value=3.4e-18 Score=155.94 Aligned_cols=245 Identities=20% Similarity=0.298 Sum_probs=187.2
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
.+...+++.|++|+++|++..++...+..+|..+++.+++.+. +..+||+.+++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~ 161 (352)
T cd06174 105 YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA-----------------------ESLGWRWLFLILAI 161 (352)
T ss_pred cHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhHHHHHHHHHH
Confidence 3567789999999999999999999999999999999999887 45579999999887
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
..++..+...+++ +.++.....
T Consensus 162 ~~~~~~~~~~~~~----------------------------------------------------------~~~~~~~~~ 183 (352)
T cd06174 162 LGLLLALLLLFLL----------------------------------------------------------RLLLLLALA 183 (352)
T ss_pred HHHHHHHHHHHHH----------------------------------------------------------HHHHHHHHH
Confidence 7776655543332 012333344
Q ss_pred HHHHHHHHHHHHHhHhhhhhhc-CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH-HHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPAT-GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI-IQLGGFLL 239 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-~~~~~~~~ 239 (402)
.+...........+.|.+.++. +.+..+.+. ......++.+++.++.+++.||+|||+ .+..+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
T cd06174 184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGL------------LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLL 251 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444555666677778887774 777765444 777778888899999999999999999 88888877
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
..++.+..... .+. ..........+.+.....+....+..|..|++.|++..++.+..
T Consensus 252 ~~i~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (352)
T cd06174 252 AALGLLLLALA---------------------PSL-ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTF 309 (352)
T ss_pred HHHHHHHHHHh---------------------ccH-HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 77776666553 122 22333333344444555667888899999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
..++..+++.+.+.+.+.. +++..+.+.+++.+++.+..+++
T Consensus 310 ~~~~~~i~~~i~g~l~~~~--~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 310 GSLGGALGPLLAGLLLDTG--GYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHHHHHHHHHHhccc--CcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999998766 88999999988888877766543
No 46
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.81 E-value=2.6e-18 Score=160.33 Aligned_cols=272 Identities=12% Similarity=0.038 Sum_probs=167.8
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+....++.|+.|+++|+++.++...+..+|.++++.+++.+. +..+||+.|++.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~~~~~~~~~~~~ 181 (408)
T PRK09874 125 PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA-----------------------DSYGLRPVFFITASV 181 (408)
T ss_pred HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhCHHHHHHHHHHH
Confidence 345667889999999999999999999999999999999886 556899999988777
Q ss_pred HHHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++.. +..+++||.++. .+++++.+. ++. .+.++++ + ........
T Consensus 182 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~-------------------------~~~~~~~---~---~~~~~~~~ 227 (408)
T PRK09874 182 LFLCFLVTLFCIRENFQP--VSKKEMLHM-REV-------------------------VTSLKNP---K---LVLSLFVT 227 (408)
T ss_pred HHHHHHHHHHHhccCccc--ccchhhhHH-HHH-------------------------HHhCcCC---c---hHHHHHHH
Confidence 66544 344556765421 101110000 000 0000111 1 11111111
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
.+...........+.+.+..+.+.+...... ..+....+..++.+++.+..|+++||+|||+.+..+..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 299 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAF--------ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSV 299 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 1111122222333445555553322221111 22224445566677777888999999999999888776655
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 321 (402)
++.+..... .+. ....+..+..+.+.....+...++..+..|++.|++..++.+....
T Consensus 300 ~~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 357 (408)
T PRK09874 300 LLLIPMSFV---------------------QTP-LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRD 357 (408)
T ss_pred HHHHHHHHh---------------------ccH-HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHH
Confidence 554443332 111 1222222222222333344455556778898999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+|..++|.+.+.+.+.. +|+..|++.+++.+++.+..++.
T Consensus 358 ~g~~~gp~~~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 358 IGNVTGPLMGAAISANY--GFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHhhHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 89999999988888877776654
No 47
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.81 E-value=4.7e-18 Score=155.96 Aligned_cols=250 Identities=10% Similarity=0.045 Sum_probs=161.2
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|...+++.|++|+++|+++.++.+.+..+|.++++.+++.+. +..+||+.|++.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------------------~~~g~~~~~~~~~~~ 167 (365)
T TIGR00900 111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY-----------------------ATLGIKWAIWVDAVG 167 (365)
T ss_pred HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999887 557899999987776
Q ss_pred HHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 83 AALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 83 ~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
.++..+..+. .||.++. .+++.+++..+.. .+.++. .+++ +.++....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------------------~~~~~~-~~~~--~~~~~~~~ 217 (365)
T TIGR00900 168 FAISALLIVSVRIPELAAS--EIQALSNAVLRDT-------------------------REGIKF-VLKN--PLLRTLLL 217 (365)
T ss_pred HHHHHHHHHhcccccCCCc--cccccchhHHHHH-------------------------HhHHHH-HHcC--cHHHHHHH
Confidence 6655444333 3433221 0000000000000 000111 1111 12222222
Q ss_pred HHHHHHHHHHHHH-HhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372 161 TWFLLDIAFYTIN-LTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
..+.......... .+.|.+.++ ++.+..+.+. ......++.+++.++.+++.||++||+.+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 285 (365)
T TIGR00900 218 LALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGW------------VLAAFGLGALLGALLLGLLGRYFKRMALMTGAIF 285 (365)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 2333333333333 566777776 6777765443 6666777888888899999999999998887766
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
+.+++...+... ........+..+..+++.....+...++..|.+|++.|+++.|+.+.
T Consensus 286 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 344 (365)
T TIGR00900 286 VIGLAILVVGLT---------------------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFS 344 (365)
T ss_pred HHHHHHHHHHhh---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555544432 11112222222333333333455667788999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhc
Q 042372 319 AGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~ 338 (402)
...++..++|.+.+.+.+..
T Consensus 345 ~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 345 LSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988753
No 48
>PRK12382 putative transporter; Provisional
Probab=99.81 E-value=5.6e-18 Score=157.16 Aligned_cols=258 Identities=12% Similarity=0.020 Sum_probs=165.0
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|+.|+++|++++++.+.+..+|.++++.+++.+. ...|||+.+.+..+.
T Consensus 131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH-----------------------SHFGFAALALTTMVL 187 (392)
T ss_pred HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH-----------------------hccChHHHHHHHHHH
Confidence 345567889999999999999999999999999999998886 567899987766555
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
.++.+......||.+.. +++ +.+.++.+ +..++..+. .
T Consensus 188 ~~~~~~~~~~~~~~~~~----~~~-----------------------------~~~~~~~~-----~~~~~~~~~----~ 225 (392)
T PRK12382 188 PLLAWAFNGTVRKVPAH----AGE-----------------------------RPSLWSVV-----GLIWKPGLG----L 225 (392)
T ss_pred HHHHHHHHHhccCCCCC----ccc-----------------------------CchHHHHH-----HHHHHhHHH----H
Confidence 44433332233432210 000 00001111 111111111 1
Q ss_pred HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI 242 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~ 242 (402)
......+.....+.+.++++.+++.. +. ......++.+++.++.|++.||+|||+.+..+..+..+
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 291 (392)
T PRK12382 226 ALQGVGFAVIGTFVSLYFASKGWAMA--GF------------TLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETV 291 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCchh--HH------------HHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHH
Confidence 11222333445566666666655422 11 33345566677888999999999999988888776666
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA 322 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 322 (402)
+.+++... .+.+.... .....+.+.....+...+...|.+|++.|+++.|+.+....+
T Consensus 292 ~~~~~~~~---------------------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 349 (392)
T PRK12382 292 GLLLLWLA---------------------PTAWVALA-GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDI 349 (392)
T ss_pred HHHHHHHc---------------------ccHHHHHH-HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 65544432 11222222 222222222223344555668889999999999999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
|..++|.+.+.+.+.. +|+..|.+.+++.+++.++.++.
T Consensus 350 g~~ig~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 350 AYGVSGPLAGMLATSF--GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987 89999999888888877766543
No 49
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.80 E-value=3.3e-19 Score=165.56 Aligned_cols=195 Identities=14% Similarity=0.174 Sum_probs=133.9
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
||....+++.|+.+++||+.++++.++.++|.++|++++..+.+..+ .....||||.|++.++
T Consensus 152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~-----------------~~~~~gW~~~FiI~G~ 214 (495)
T KOG2533|consen 152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG-----------------SGGLAGWRWLFIIEGV 214 (495)
T ss_pred chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC-----------------CCCcCCceeehhHHHH
Confidence 68889999999999999999999999999999999999999765222 1267899999999887
Q ss_pred HHHH-HHHHHhhcCCCch--hHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHH
Q 042372 82 PAAL-TYYWRMKMPETAR--YTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGT 158 (402)
Q Consensus 82 ~~~~-~~~~~~~lpesp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (402)
+.++ +++..+++|+.|. |.. .++|..-..++..+.+ .+..+.+.+....++.++. ..++..
T Consensus 215 i~~~~gi~~f~~lp~~P~~~~fl----~~~ek~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~d-------p~vw~~ 278 (495)
T KOG2533|consen 215 ITLVLGIVVFFFLPDNPSKAWFL----TDEEKELVVERLRESP-----SGGIENKFKWKGFKEALKD-------PGVWPF 278 (495)
T ss_pred HHHHHHheEEEEecCChhhcccc----chHHHHHHHHHHHhcc-----CCCcccccCHHHHHHHHhc-------hhHHHH
Confidence 7776 5566677999997 321 1111111111111000 0000000011111111111 357778
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhHHH
Q 042372 159 TSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFIIQ 233 (402)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~~~ 233 (402)
.++.++.....+++..|+|.++.+ .|++..+++. +.....++.+++.+++|+++|| ..+|...
T Consensus 279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~------------ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~ 346 (495)
T KOG2533|consen 279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANL------------LSTPYDVGGIVGLILAGYLSDRLKTIFARRLLF 346 (495)
T ss_pred HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhcc------------ccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 888888888899999999999998 5688776655 8888889999999999999999 5566655
Q ss_pred HHHHHHHH
Q 042372 234 LGGFLLMS 241 (402)
Q Consensus 234 ~~~~~~~~ 241 (402)
.....+..
T Consensus 347 ~~~~~~~~ 354 (495)
T KOG2533|consen 347 IVFLCLYA 354 (495)
T ss_pred HHHHHHHH
Confidence 55544333
No 50
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.80 E-value=1.4e-17 Score=154.90 Aligned_cols=273 Identities=10% Similarity=-0.030 Sum_probs=163.2
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGI-LFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
...+++.|+.|+++|++++++.+.+.++|. ++++.+++.+. +..||+..++.....
T Consensus 125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~-----------------------~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI-----------------------PAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------cccchHHHHHHHHHH
Confidence 345677899999999999999999999997 57888887775 455655544443322
Q ss_pred HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++ .++..++.+|.++. .+++++++ ..+..+.++ ..+++ +.++.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~-~~~~~--~~~~~~~~~ 230 (402)
T TIGR00897 182 VLTGGVIALFSNKDIFTP--QHMQTREK--------------------------FSELGKAAT-ILFTN--PNVLLGGMV 230 (402)
T ss_pred HHHHHHHHHhccCCCCCc--ccccCCcc--------------------------hhhHHHHHH-HHHcC--hhHHHHHHH
Confidence 222 22223334443210 00000000 000000011 11111 233444444
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH-HHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL-GGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-~~~~~~ 240 (402)
.++....++....+.|.+.++.|++..+.+. ......++.+++.++.|+++||+|||+.+. .+.+..
T Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~ 298 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFVAELGFSTSEWLQ------------IWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGC 298 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 5555666778888999999888888775433 555667788899999999999999888664 222223
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.++.+.+........ .+.+.... ..+..+.+..+..+ ......|..| +.|+++.|+.+...
T Consensus 299 ~~~~~~l~~~~~~~~----------------~~~~~~~~-~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~ 359 (402)
T TIGR00897 299 GIFTLALYYIPQHFG----------------HSFAVALI-IAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSA 359 (402)
T ss_pred HHHHHHHHHHHHccC----------------CcHHHHHH-HHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHH
Confidence 332222222111000 11112212 22222221222222 2234466655 58999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.+++.++|.+.+.+.+.. ++...+++.+++.+++.++..|+
T Consensus 360 ~lg~~~gp~i~g~l~~~~--g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 360 GLSAFLAPAIAVLFIGFF--GAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999987 88899999888888877777665
No 51
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.80 E-value=3.3e-17 Score=152.34 Aligned_cols=273 Identities=13% Similarity=0.056 Sum_probs=160.6
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCC-CcchhHHHHHhhH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQG-DYLWRIVLMFGAV 81 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Wr~~f~~~~i 81 (402)
|...+++.|+.|+++|+++.++...+..+|.++++.++..+. + ..|||..|++.++
T Consensus 113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~-----------------------~~~~gw~~~f~i~a~ 169 (402)
T PRK11902 113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA-----------------------DRVLGWGNTYLLMAG 169 (402)
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH-----------------------hcccCHHHHHHHHHH
Confidence 455678999999999999999999999999999999988886 3 3589999999887
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhh-hHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKH-GLHLLGTTS 160 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (402)
..++..+..+++||+++. ++++++..+.. .+.++ ..++++ .+..+....
T Consensus 170 ~~l~~~l~~~~~~e~~~~----~~~~~~~~~~~-------------------------~~~~~-~l~~~~~~~~~l~~~~ 219 (402)
T PRK11902 170 LMLAGALTTLWAPEPEVP----ARPPRSLGEAV-------------------------VGPLR-DFFSRRGAWALLLLIV 219 (402)
T ss_pred HHHHHHHHHHhcCCCccc----ccccchhHHHH-------------------------HHHHH-HHHhCcCHHHHHHHHH
Confidence 766665556678886542 11111000000 00111 112221 111121111
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHH-HHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMF-LVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
.........+ ....+.+.++.|+++.+.+. .. ....++.+++.++++++.||+|||+.+..+..+
T Consensus 220 l~~~~~~~~~--~~~~~~l~~~~G~~~~~~g~------------~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~ 285 (402)
T PRK11902 220 LYKLGDAFAG--SLSTTFLIRGAGFSAGEVGI------------VNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVL 285 (402)
T ss_pred HHHhHHHHHH--HHHHHHHHHhcCCCHHHHHH------------HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1111111111 12223344557888775433 33 333456778888999999999999887766655
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH---HHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG---LTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
..+..+.+...... . .+.+....... +..+............++.+.+|.+.+ ++.
T Consensus 286 ~~l~~l~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~ 344 (402)
T PRK11902 286 QAVSNLGYWVLAVT-P----------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALL 344 (402)
T ss_pred HHHHHHHHHHHHhc-C----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHH
Confidence 54443333221110 0 11112221111 122222233344555677777776554 445
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhccc
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPE 365 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 365 (402)
+....++..+++.+.+.+.+.. ||+..|.+.+++.+++.++.+..+.
T Consensus 345 ~~~~~l~~~~~~~~~G~l~~~~--G~~~~f~~~~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 345 SALASVGRVYVGPTSGYLVEAY--GWPGFYLMTVVIALPGLALLWLMRG 391 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555667766667888999888 8999999988888888777665543
No 52
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.80 E-value=1.7e-18 Score=159.62 Aligned_cols=274 Identities=13% Similarity=0.166 Sum_probs=161.6
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAG-VISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
+|...+++.|++|+++|+++.++.+.+..+|.++++ .++..+. ...+||+.|++.+
T Consensus 101 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 157 (379)
T TIGR00881 101 WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA-----------------------ELYSWHWVFIVPG 157 (379)
T ss_pred CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH-----------------------hcCCchhHHHHHH
Confidence 467788999999999999999999999999999999 4666554 5578999999877
Q ss_pred HHHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372 81 VPAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT 159 (402)
Q Consensus 81 i~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (402)
+..++ .++..+++||+|+... .++.++. .+++.++.++.++++...++.......++ +.++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 222 (379)
T TIGR00881 158 IIAIIVSLICFLLLRDSPQSCG--LPPAEEM-----------PNEEPDGDAEKKEEELTKKQIFLQYVLLN--KVLWYIS 222 (379)
T ss_pred HHHHHHHHHHheeeCCCccccc--cCccccC-----------cccccccccccccccccchHHHHHHHHhc--chHHHHH
Confidence 66555 4455556788764310 1110000 00000000000000111111111111121 2334444
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc-hhHHHHHHH
Q 042372 160 STWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG-RFIIQLGGF 237 (402)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g-rr~~~~~~~ 237 (402)
+..+......+....+.|.++.+ .|++..+.+. ......++.+++.++.+++.||.. ||+..+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~- 289 (379)
T TIGR00881 223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASW------------AFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAV- 289 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHcchhHHHHHHHHHHHcCCcchHHHH-
Confidence 44444445556667778888765 6887765444 666777888999999999999864 33322211
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH
Q 042372 238 LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA 317 (402)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 317 (402)
.........+.... .... .+. ....+.....+....+..+....+..|.+|++.|+++.|+.+
T Consensus 290 ~~~~~~~~~~~~~~--~~~~--------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 352 (379)
T TIGR00881 290 FFMALIIVSLLVYW--LNPA--------------ANP-LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVG 352 (379)
T ss_pred HHHHHHHHHHHHHh--cCcc--------------hhH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 11111111111110 0000 111 222222222232233444445567799999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCchhh
Q 042372 318 AAGKAGAIVGAFGVQYYTQKGDKQIKQS 345 (402)
Q Consensus 318 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~ 345 (402)
....+|+.++|.+.+.+.+.. +|+..
T Consensus 353 ~~~~~g~~~~~~~~g~l~~~~--g~~~~ 378 (379)
T TIGR00881 353 FFAYLGGILAGLPLGYLADGF--GWAGA 378 (379)
T ss_pred HhhhhhhhhhhhhHHHHHHhh--ccccc
Confidence 999999999999999999977 66654
No 53
>PRK10504 putative transporter; Provisional
Probab=99.80 E-value=1.4e-17 Score=158.28 Aligned_cols=269 Identities=12% Similarity=0.060 Sum_probs=159.3
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|...+++.|++|+++|++..++......+|..+++.+++.+. +..+||+.|++..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~-----------------------~~~gw~~~f~~~~~~ 173 (471)
T PRK10504 117 PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV-----------------------EYASWHWIFLINIPV 173 (471)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----------------------hhccHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999887 567899999997776
Q ss_pred HHHHHHH-HhhcCCCchhHhhhcCCHHHHHHHHH------Hhh--ccccccc---------------------cCCCCCC
Q 042372 83 AALTYYW-RMKMPETARYTALVEGNQKKAAVDMA------KVL--DTDINVA---------------------TSAYPAP 132 (402)
Q Consensus 83 ~~~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~------~~~--~~~~~~~---------------------~~~~~~~ 132 (402)
.++..+. ....|+.+.- ..+.+....... ... +.+.... .++.+
T Consensus 174 ~~l~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (471)
T PRK10504 174 GIIGAIATLMLMPNYTMQ----TRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN-- 247 (471)
T ss_pred HHHHHHHHHHhCCCcccc----CCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 6554433 3345554311 111111100000 000 0000000 00000
Q ss_pred CCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHh
Q 042372 133 VSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALF 211 (402)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (402)
..++ .+..+.++++ .+.......++....+.....+.|.+++. .|.++...+. ......+
T Consensus 248 ~~~~-----~~~~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~~~~~ 308 (471)
T PRK10504 248 NNRA-----LFSLKLFRTR--TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGL------------MMIPMVL 308 (471)
T ss_pred CCCC-----ccCHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHH
Confidence 0001 1111122211 22223333333333444555567877774 7777765443 5566667
Q ss_pred hhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcC
Q 042372 212 ATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFG 291 (402)
Q Consensus 212 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (402)
+.+++.++.+++.||+|||+++..+..+..+...++..... . ... ....+.....+.+...
T Consensus 309 ~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----~--------------~~~-~~~~~~~~~~g~~~~~ 369 (471)
T PRK10504 309 GSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL----L--------------GWY-YLLPFVLFLQGMVNST 369 (471)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc----c--------------ccH-HHHHHHHHHHHHHHHH
Confidence 77777788999999999999998887766666554443211 1 111 1111111111111122
Q ss_pred CcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372 292 PNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 292 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
..+....+..+..|++.|+.+.++.++...+|..+|+.+.+.+.+..
T Consensus 370 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 370 RFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22344456678899999999999999999999999999998887765
No 54
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.80 E-value=2.7e-17 Score=151.88 Aligned_cols=262 Identities=12% Similarity=0.129 Sum_probs=159.9
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA 83 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~ 83 (402)
...+++.|++|+++|+++++....+..+|..+++.+++.+. +..+||+.|++.++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------------------~~~gwr~~f~~~~~~~ 167 (382)
T PRK10091 111 VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS-----------------------QEFSWRYTFLLIAVFN 167 (382)
T ss_pred HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh-----------------------hhccHHHHHHHHHHHH
Confidence 44667899999999999999999999999999999998886 5678999999987766
Q ss_pred HHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 84 ALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 84 ~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
++.. ...+++||.++. ++.+.++ .. +..++. ..+......
T Consensus 168 ~~~~~~~~~~lp~~~~~---~~~~~~~-----------------------------~~-----~~~~~~--~~~~~~~~~ 208 (382)
T PRK10091 168 IAVLASIYFWVPDIRDE---AKGGLRE-----------------------------QF-----HFLRSP--APWLIFAAT 208 (382)
T ss_pred HHHHHHHHHhCCCCCcc---cccCHHH-----------------------------HH-----HHhcCh--HHHHHHHHH
Confidence 5543 345567875421 0000000 00 011111 111222222
Q ss_pred HHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
+......+....+.+.++. ..|+++.+.+. ......++.+++.++.+++.||+|+|+.+..+..+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~ 276 (382)
T PRK10091 209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTF------------IMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIV 276 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHH
Confidence 2222233333344444554 47887775444 6777788889999999999999999999888877666
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcc-cceeeecccCchhhhhhhHHHHHHHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNS-TTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
++.+++.... +..+.......+.. .+..+..+ .......+..|.+.++.+ ..+...
T Consensus 277 i~~~~~~~~~--------------------~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 333 (382)
T PRK10091 277 LALLMLFFFG--------------------GMKTASLIFAFICC-AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAF 333 (382)
T ss_pred HHHHHHHHHH--------------------hhHHHHHHHHHHHH-HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHH
Confidence 6554443221 11112222111111 11112122 122233444555555544 346678
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.+|..+||.+.+.+.+... +|+..+.+.+++.++........
T Consensus 334 ~~g~~~Gp~~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 334 NLGSAIGAYCGGMMLTLGL-AYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHHhHHHHHccc-CcchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998643 78888888777766665555443
No 55
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.79 E-value=5.6e-17 Score=150.12 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=155.6
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|...+++.|++|+++|+++.++...+.++|.++++.+++.+. +.++||+.|++.++.
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~-----------------------~~~gw~~~f~~~~~l 183 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG-----------------------ELIGWRNVFNAAAVM 183 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhcCHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999987 667899999998776
Q ss_pred HHHHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
+++..+. ...+||+|+. +++.. +..++. +++ +.++.....
T Consensus 184 ~~~~~l~~~~~~p~~~~~----~~~~~----------------------------~~~~~~-----l~~--~~~~~~~~~ 224 (394)
T PRK10213 184 GVLCIFWIIKSLPSLPGE----PSHQK----------------------------QNTFRL-----LQR--PGVMAGMIA 224 (394)
T ss_pred HHHHHHHHHHHCCCCCcc----cccch----------------------------hHHHHH-----hcC--HHHHHHHHH
Confidence 6654433 3346775421 10000 001111 111 122222222
Q ss_pred HHHHHHHHHHHHHh-HhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLT-QKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.+......+....+ .|.+.++.|++....+. ......++.+++.++.+++.||.+|+.. +.+..+.
T Consensus 225 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~------------~~~~~~~~~iig~~~~~~l~~r~~~~~l-~~~~~~~ 291 (394)
T PRK10213 225 IFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTL------------VLLSFGIASFVGTSLSSFILKRSVKLAL-AGAPLVL 291 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHH
Confidence 23323333444444 47777778888775443 5666777888888999999999654433 3333332
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.++...+.... .+.+... ...+..+++.....+...+++.+..|+ .++...++.....
T Consensus 292 ~~~~~~l~~~~--------------------~~~~~~~-~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 349 (394)
T PRK10213 292 AVSALVLTLWG--------------------SDKIVAT-GVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVI 349 (394)
T ss_pred HHHHHHHHHHh--------------------hhHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence 33322222211 1111222 222222222223333444456677774 4566677777888
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHH
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGF 357 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (402)
.+|..+|+.+.+.+.+.. ++...+...+++.++..
T Consensus 350 ~lg~~~G~~l~G~l~~~~--g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 350 QLANTCGAAIGGYALDNI--GLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHHHHhcc--ChhhHHHHHHHHHHHHH
Confidence 899999999999999976 67676666655544433
No 56
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.77 E-value=2.9e-17 Score=156.79 Aligned_cols=272 Identities=10% Similarity=0.007 Sum_probs=166.3
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|...+++.|++|+++|+++.+++..+..+|..+++.+++.+. +..+||+.|++.+++
T Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~~w~~~f~~~~~~ 165 (485)
T TIGR00711 109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII-----------------------ENYHWRWIFLINVPI 165 (485)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc-----------------------cCcCceehhhhhhHH
Confidence 456788999999999999999999999999999999999887 678999999998877
Q ss_pred HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHH--------HH-hhccccccccCC-------------------CCCCC
Q 042372 83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDM--------AK-VLDTDINVATSA-------------------YPAPV 133 (402)
Q Consensus 83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~-------------------~~~~~ 133 (402)
+++..+ ..+++||+++. . +++.+.....+ .. ....+.....++ .+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~--~-~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (485)
T TIGR00711 166 GIIVVVVAFFILPRDKPA--A-SENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTD 242 (485)
T ss_pred HHHHHHHHHHHcCCcccc--c-cCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 665443 34456765431 1 11111110000 00 000000000000 00000
Q ss_pred CCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 042372 134 SPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFA 212 (402)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (402)
+++ ....+.+++ +.+.......+.....++....+.|.++++ .|+++.+.+. ......++
T Consensus 243 ~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~------------~~~~~~~~ 303 (485)
T TIGR00711 243 DNP-----LVDLRLFKY--RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGL------------HILPVGLA 303 (485)
T ss_pred CCC-----ccCHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHH
Confidence 001 111112221 123333444445555666777788888876 7888776554 66777788
Q ss_pred hcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCC
Q 042372 213 TVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGP 292 (402)
Q Consensus 213 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (402)
.+++.++.|++.||+|||+.+.++..+.+++...+..... .. ...........+ .+++....
T Consensus 304 ~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---~~--------------~~~~~~~~~~~l-~g~g~~~~ 365 (485)
T TIGR00711 304 PMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---PD--------------TPFLAIALPQFI-RGFGMGCF 365 (485)
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---CC--------------CCHHHHHHHHHH-HHHHHHHH
Confidence 8889999999999999999988887766666555442111 11 111122222111 12211111
Q ss_pred cccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372 293 NSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK 337 (402)
Q Consensus 293 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 337 (402)
.+.......+..|++.|+++.++.+....+|+.+|+.+.+.+.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 366 FMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334456778999999999999999999999999999888764
No 57
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.76 E-value=2.3e-17 Score=150.95 Aligned_cols=253 Identities=10% Similarity=-0.000 Sum_probs=151.9
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+.+ ....++||..|++.++.
T Consensus 102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~---------------~~~~~~wr~~f~i~ai~ 166 (356)
T TIGR00901 102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFAN---------------TGLITLWGYIFFWTALL 166 (356)
T ss_pred HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---------------cccccccHHHHHHHHHH
Confidence 345678999999999999999999999999999999998887432211 12356799999998887
Q ss_pred HHHHHHHHhh-cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTYYWRMK-MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~~~~~~-lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++.++..++ .||+++. ++.+++..+.. ++.++....++..+..+...+.
T Consensus 167 ~l~~~~~~~~~~~e~~~~----~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~ 217 (356)
T TIGR00901 167 ILPGLLVTLFLAKEPQED----ASVPKPLTQAV-------------------------LKPIREFFQRKNMIQALLLLLL 217 (356)
T ss_pred HHHHHHHHHHhccCCCcc----cccchhHHHHH-------------------------HHHHHHHHHhcCchHHHHHHHH
Confidence 7776655554 5775321 10000000000 0011111111111123333334
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
.+.....++....+.|.++++.|++..+.+. .......++.+++.++++++.||+|||+.+..+.++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~-----------~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 286 (356)
T TIGR00901 218 IVLYKLGDSAATVLTTLFLLDMGFSKEEIAL-----------VAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4444556667777888888888888776433 12223345667888899999999999998888877666
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 321 (402)
+...++.+........+ . . ....+......+...+......+...++..|.+|++.|++..|+.+...+
T Consensus 287 ~~~~~~~~~~~~~~~~~--~--------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 287 LTNAGFVWLASNGHHDG--I--------T-FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhcCcccc--c--------c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 65544433211000000 0 0 01112222222222332333455677888999999999999999887653
No 58
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.76 E-value=2.5e-16 Score=145.77 Aligned_cols=246 Identities=12% Similarity=0.093 Sum_probs=151.2
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|++|+++|+++.++.+....+|.++++.+++.+. +..+||+.|++.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~~~~~~~~~~~~~ 168 (385)
T TIGR00710 112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL-----------------------VWLSWHAIFAFLSLA 168 (385)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHcCHHHHHHHHHHH
Confidence 445688999999999999999999999999999999999886 557899999987776
Q ss_pred HHHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++.. +..+++||+++. .++++.++..+ .++. ..++ +.++...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------------------------~~~~-~~~~--~~~~~~~~~ 214 (385)
T TIGR00710 169 GILLSALIFFILPETLPY--EARIQISTYFE-----------------------------TFLL-LLKS--KMFWGYALI 214 (385)
T ss_pred HHHHHHHHHHhCCCCCCC--cccCCHHHHHH-----------------------------HHHH-HHcC--chhHHHHHH
Confidence 66543 344557776532 10111111000 0011 1111 112222222
Q ss_pred HHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.......++....+.|.+++ +.|+++.+.+. ......++.+++.++.+++.||+|||+.+..+..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 282 (385)
T TIGR00710 215 YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGL------------LFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILF 282 (385)
T ss_pred HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333344555666677765 47887765443 666677888889999999999999999888877666
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.++..++....... ..............+.+.....+....+..|..| +.|+++.++.+...
T Consensus 283 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 344 (385)
T TIGR00710 283 AVSAVLLEITAILG-----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLR 344 (385)
T ss_pred HHHHHHHHHHHHhc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHH
Confidence 66555544332100 0111222222222222222233455566678777 56899999998888
Q ss_pred HHHHHHHHHhHHHHh
Q 042372 321 KAGAIVGAFGVQYYT 335 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~ 335 (402)
..++.+.+.+.+...
T Consensus 345 ~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 345 LVLGAIVGYLVSLIH 359 (385)
T ss_pred HHHHHHHHHHHHhcc
Confidence 775555555555443
No 59
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.76 E-value=2.4e-16 Score=145.29 Aligned_cols=282 Identities=13% Similarity=0.104 Sum_probs=172.3
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhcccCcccccccccccCCCCCcchhHHH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSG-----IFLHVYNAPAFNRNHVLSAQPQGDYLWRIVL 76 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f 76 (402)
++.....+++|+|+++||+++++.....++|..+++.+...+.. .++.. . +.....+..+||...
T Consensus 145 f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~---~-------~~~~~g~~~~~~~~~ 214 (462)
T PRK15034 145 FASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN---G-------VPQADGSVMSLANAA 214 (462)
T ss_pred HHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc---c-------ccccccchHHHHHHH
Confidence 45677889999999999999999976677777766665554331 11110 0 000001355699998
Q ss_pred HHhhHHHHHHHHHHh-hcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHH
Q 042372 77 MFGAVPAALTYYWRM-KMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHL 155 (402)
Q Consensus 77 ~~~~i~~~~~~~~~~-~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (402)
++-+++.++..++.+ ++++.|. .+.+.++. . ...|+ +..
T Consensus 215 ~~~~~~~iv~~i~~~~~~~~~~~----~~~~~~~~---------------------------------~-~vlk~--~~~ 254 (462)
T PRK15034 215 WIWVPLLAIATIAAWSGMNDIAS----SRASIADQ---------------------------------L-PVLQR--LHL 254 (462)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc----cccCHHHH---------------------------------H-HHhCC--Cch
Confidence 887777666544433 4444331 01111110 1 11111 135
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHH
Q 042372 156 LGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLG 235 (402)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~ 235 (402)
+.+.+.+++....+.++..++|.+.++ .++.... .....+..+...+..+++|+++||+|+|+++.+
T Consensus 255 Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~------------l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~ 321 (462)
T PRK15034 255 WLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNI------------LRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI 321 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHH------------HHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence 556666666666777778788888766 2222211 012333456677777899999999999999998
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch---------
Q 042372 236 GFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA--------- 306 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--------- 306 (402)
+++++.++......... .... .+.......+..+....+.+ +...+-++...+|+
T Consensus 322 ~~i~~~i~~~~~~l~lp-~~~~--------------~~~~~~~~~~~~l~~~~G~g-ngsvfk~ip~~f~~~~~~~~~~~ 385 (462)
T PRK15034 322 NFIFMAIFSALLFLTLP-GTGS--------------GNFIAFYAVFMGLFLTAGLG-SGSTFQMIAVIFRQITIYRVKMK 385 (462)
T ss_pred HHHHHHHHHHHHHHHhc-cccc--------------cHHHHHHHHHHHHHHHhccc-chHHHHhhHHHHhhhhhhccccc
Confidence 88766666544333211 0000 12222222222222222233 23455566777774
Q ss_pred ------------hhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 307 ------------RLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 307 ------------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+.-|.+.|+....+.+|+++.|.+++...+..+ ++...|+.+.+..+++.++.++.
T Consensus 386 ~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 386 GGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-SPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred ccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 146788999999999999999999999888776 68888999999999988888754
No 60
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.75 E-value=1.1e-16 Score=152.66 Aligned_cols=274 Identities=13% Similarity=0.055 Sum_probs=165.0
Q ss_pred hhHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372 5 SAVIMSEYA-NKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA 83 (402)
Q Consensus 5 ~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~ 83 (402)
....+.+.+ |+++|+++++++.....+|.+++|.+++.+. +..+||+.|++....+
T Consensus 115 ~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~-----------------------~~~gwr~~f~i~~~~~ 171 (495)
T PRK14995 115 TLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL-----------------------EHFYWGSVFLINVPIV 171 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------ccCChHHHHHHHHHHH
Confidence 344555654 7899999999999999999999999999997 6789999999987666
Q ss_pred HHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHH------Hhhcc-ccccccCCCCC---------------CCCCCcccc
Q 042372 84 ALT-YYWRMKMPETARYTALVEGNQKKAAVDMA------KVLDT-DINVATSAYPA---------------PVSPEASTY 140 (402)
Q Consensus 84 ~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~---------------~~~~~~~~~ 140 (402)
++. ++..+++||+|.. ++++.+....... ..... +.......... ...+.+...
T Consensus 172 ~~~~~l~~~~l~~~~~~---~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~ 248 (495)
T PRK14995 172 LVVMGLTARYVPRQAGR---RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASR 248 (495)
T ss_pred HHHHHHHHHhCCCCCCC---CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 654 3445567886532 1111111000000 00000 00000000000 000000000
Q ss_pred cchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchh
Q 042372 141 GLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWF 219 (402)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 219 (402)
..+..+.+++ +.+.......+.....+++...+.|.++++ .|+++.+.+. ......++..++.++
T Consensus 249 p~~~~~lf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~------------~~~~~~~~~~~~~~~ 314 (495)
T PRK14995 249 PMIDMRLFTH--RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGM------------FMLPVMVASGFSGPI 314 (495)
T ss_pred CCcCHHHhCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHH
Confidence 1111122222 133334444444455566777788888876 7888886655 777778888889999
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceee
Q 042372 220 TVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299 (402)
Q Consensus 220 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (402)
.|++.||+|+|+.+..+.++.+++.+.+..... . .+.+... ...+..+++.....+.....
T Consensus 315 ~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~---~---------------~~~~~~~-~~~~l~G~g~g~~~~~~~~~ 375 (495)
T PRK14995 315 AGILVSRLGLRLVATGGMALSALSFYGLAMTDF---S---------------TQQWQAW-GLMALLGFSAASALLASTSA 375 (495)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC---C---------------CchHHHH-HHHHHHHHhHHHHHHHHHHH
Confidence 999999999999888887766666554443211 1 1111222 22222222222223344556
Q ss_pred ecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372 300 PAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK 337 (402)
Q Consensus 300 ~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 337 (402)
..+..|++.++.+.++.++...+|+.+|+.+.+.+.+.
T Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 376 IMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999998887653
No 61
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.75 E-value=4.9e-16 Score=144.16 Aligned_cols=250 Identities=13% Similarity=0.086 Sum_probs=141.4
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|++|+++|++..++.+....+|.++++.+++.+. +..+||+.|++.++.
T Consensus 110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~-----------------------~~~g~~~~~~~~~~~ 166 (392)
T PRK10473 110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM-----------------------LKFPWQSLFYTMAAM 166 (392)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hCcChHHHHHHHHHH
Confidence 346678999999999999999999999999999999988876 567899999998776
Q ss_pred HHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++. ++..+++||++.. . ++++... .+..++.++++ .++.....
T Consensus 167 ~~i~~~~~~~~~~~~~~~--~-~~~~~~~-------------------------~~~~~~~~~~~-------~~~~~~~~ 211 (392)
T PRK10473 167 GILVLLLSLFILKETRPA--R-APAASSK-------------------------PRENSESLLNR-------FFLSRLVI 211 (392)
T ss_pred HHHHHHHHHHHcCCCCCc--c-cCCccch-------------------------HHHHHHHHhCH-------HHHHHHHH
Confidence 6654 3445567876421 0 1100000 00001111111 11111111
Q ss_pred HHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.............+.|.++. +.|+++.+.+. ......++.+++.++.+++.||+|||+.+.++..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~ 279 (392)
T PRK10473 212 TTLSVTVILTFVNTSPVLLMEQMGFSRGEYAI------------IMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF 279 (392)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 11111112223334455554 46877665433 556667777888889999999999999988887766
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.++.+.+.... ..........+...+...+.. . ....+..|.+.|+ +......
T Consensus 280 ~~~~~~~~~~~---------------------~~~~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~ 332 (392)
T PRK10473 280 LAAGITLALSP---------------------SHAVSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTL 332 (392)
T ss_pred HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHH
Confidence 66655554431 111111111111111111111 1 1224455654443 4444555
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHH
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAV 351 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (402)
.++..+++.+.+++.+.. ++.....+.+.
T Consensus 333 ~~~~~~g~~~~~~l~~~~--g~~~~~~~~~~ 361 (392)
T PRK10473 333 GIAQVCGSSLWIWLAAVL--GISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHHHHHHHHHh--ccchhHHHHHH
Confidence 567777777777777765 54443344333
No 62
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.75 E-value=1.8e-16 Score=146.39 Aligned_cols=263 Identities=11% Similarity=0.033 Sum_probs=167.0
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|.+.++..|+ +++|++..+....+.++|.++++.+++.+. +.+|||..|++.++.
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~-----------------------~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI-----------------------GMFDEQNILAILTAG 167 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH-----------------------HHcChhHHHHHHHHH
Confidence 4445555554 578899999999999999999999999987 667899999886554
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
.++.++. +.++|+++. . ++++++ + .++.+...+ ..|+ +.++......
T Consensus 168 ~~~~~~~-~~~~~~~~~--~-~~~~~~------------------~----~~~~~~~~~-----~l~~--~~~~~~l~~~ 214 (382)
T TIGR00902 168 LAFMLIG-FLIKPTIPP--K-DAIPED------------------E----SQGDSAFIA-----LLKN--PMNLRFLAAV 214 (382)
T ss_pred HHHHHHH-HHcCCCCCC--C-cccccc------------------c----cccchhHHH-----HHcC--hHHHHHHHHH
Confidence 3333333 334443210 0 000000 0 000011111 1121 1233333333
Q ss_pred HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI 242 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~ 242 (402)
++..........+.|.++++.|.+....+. ......++.+++..+.+++.||+|+|+.+.++.+...+
T Consensus 215 ~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~------------l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 215 CLIQGAHAAYYGFSAIYWQAAGISASATGL------------LWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVG 282 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHhHHHH------------HHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHH
Confidence 434444555566778888889988876544 56678888888888999999999999999988888777
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH-HHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA-AGK 321 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~ 321 (402)
..+.+... ++.+...... .+-+.......+....++.+. |++.|+++.++++. ...
T Consensus 283 ~~~~~~~~---------------------~~~~~~~~~q-~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g 339 (382)
T TIGR00902 283 RWAIIGAI---------------------EAFPLIFLLQ-ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMG 339 (382)
T ss_pred HHHHHHhH---------------------hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHH
Confidence 77666543 2222222222 222221222233455667777 99999999999864 566
Q ss_pred HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372 322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (402)
+|..+++.+.|.+.+.. ++ ..|++.+++.+++.++..
T Consensus 340 ~g~~~g~~~~G~l~~~~--g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 340 GLIAIFTAFAGFIYPTL--GA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHHHhc--cH-HHHHHHHHHHHHHHHHHH
Confidence 88999999999999987 54 667777777776655443
No 63
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.75 E-value=6.6e-16 Score=143.97 Aligned_cols=250 Identities=12% Similarity=0.049 Sum_probs=150.2
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|++|+++|++..++......+|..+++.+++.+. +..+||+.|++.++.
T Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-----------------------~~~~w~~~~~~~~~~ 176 (406)
T PRK15402 120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI-----------------------HVLPWRGMFVLFAAL 176 (406)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HccCccHHHHHHHHH
Confidence 455678899999999999999988888899999999998886 556899999987777
Q ss_pred HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++..+ ..+.+||+++. . +++ .+. +... +.++ ...++ +.++.....
T Consensus 177 ~~~~~~~~~~~~~~~~~~--~-~~~-~~~-~~~~-------------------------~~~~-~~~~~--~~~~~~~~~ 223 (406)
T PRK15402 177 AALSFFGLWRAMPETAGR--V-GEK-LSL-KELG-------------------------RDYK-LVLKN--RRFVAGALA 223 (406)
T ss_pred HHHHHHHHHHhCCCCCcc--c-ccc-ccH-HHHH-------------------------HHHH-HHHcC--cHHHHHHHH
Confidence 665444 34557876532 1 110 000 0000 0001 11111 122222222
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.+......+....+.|.++.+ .|+++.+.+. ......++.+++.++.++++||+++|+.+.++.+..
T Consensus 224 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~------------~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 291 (406)
T PRK15402 224 LGLVSLPLLAWIALSPVILISGEQLSSYEYGL------------LQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM 291 (406)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 223333334444556766544 7777665433 344445667778889999999999999988887766
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.++.+.+........ ....+......+. +.+.....+....... ..+++.|++..++.+...
T Consensus 292 ~~g~~~~~~~~~~~~----------------~~~~~~~~~~~~~-g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~ 353 (406)
T PRK15402 292 VAGLLLAALATVISS----------------HAYLWLTAGLSLY-AFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLS 353 (406)
T ss_pred HHHHHHHHHHHHccc----------------ccHHHHHHHHHHH-HHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHH
Confidence 666555544321100 1112222212222 1111111222222222 234478999999999999
Q ss_pred HHHHHHHHHhHHHHhhhc
Q 042372 321 KAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~ 338 (402)
.++..+|+.+.+.+.+..
T Consensus 354 ~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 354 MLIFTVGIELSKHAYLGG 371 (406)
T ss_pred HHHHHHHHHHHHhcccCC
Confidence 999999999999988765
No 64
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.75 E-value=7.7e-16 Score=142.51 Aligned_cols=270 Identities=11% Similarity=-0.001 Sum_probs=158.5
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
+|+..+++.|++|+++|+++.++.+....+|.++||.+++.+. + +.|+..+.+.+.
T Consensus 106 ~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~-----------------------~-~~~~~~~~i~~~ 161 (393)
T PRK11195 106 SPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA-----------------------D-PHAEAALAVCAL 161 (393)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------H-HHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999987 2 237777777665
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
..++..+..+.+||+|+. .++++.+. .+...... ...+..++++..+ ...+...+.
T Consensus 162 ~~~~~~~~~~~l~~~~~~--~~~~~~~~-~~~~~~~~------------------~~~~~l~~~~~~~---~~~~~~~~~ 217 (393)
T PRK11195 162 IYLLAALFNLFIPRLGAR--RPGQSWNP-IALLRDFF------------------HACRVLWRDKLGR---FSLAGTTLF 217 (393)
T ss_pred HHHHHHHHHhcCCCCccc--ccccCCCH-HHHHHHHH------------------HHHHHHHhCchhH---HHHHHHHHH
Confidence 555555556678887643 11111110 00000000 0000111111111 111111111
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
+. .........+.+.++ +|.++.+.+. ......++.++++++.+++.||.++|+.+..+.. .
T Consensus 218 ~~----~~~~~~~~~~~~~~~~lg~s~~~~G~------------~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~ 280 (393)
T PRK11195 218 WG----AGATLRFLVLAWAPVALGITLNQPAY------------LQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-M 280 (393)
T ss_pred HH----HHHHHHHHHHHHHHHHcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-H
Confidence 11 122223333444443 6777775544 7777888889999999999999998887776643 2
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh-hhhhHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL-RSTCHGISAAA 319 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~ 319 (402)
++....+... .+.+.......+.+.+ .....+...+...+..|++. +|++.++.+..
T Consensus 281 ~~~~~~~~~~---------------------~~~~~~~~~~~~~G~~-~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~ 338 (393)
T PRK11195 281 GLVVLLMALQ---------------------HSLLPAYPLLILIGAL-GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFN 338 (393)
T ss_pred HHHHHHHHHH---------------------hHHHHHHHHHHHHHHh-hhhhhhhHHHHHHhhCcccccchhHHHHHhHH
Confidence 3322222221 2222222222222222 22222334455567766654 79999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (402)
.+++..++..+.+.+... +.+..+.+.+...++++.+.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 339 ENLAMLLMLGLYSLLVKL---GVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999888866443 667777766665555555544
No 65
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.74 E-value=4.8e-16 Score=144.05 Aligned_cols=265 Identities=12% Similarity=0.007 Sum_probs=156.4
Q ss_pred HhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHHH
Q 042372 8 IMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTY 87 (402)
Q Consensus 8 ~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~~ 87 (402)
+..|..++++++.+.+....+..+|.++++...+.+. +..|||..|++.++..++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~-----------------------~~~gw~~~f~~~a~l~~~~~ 177 (390)
T TIGR02718 121 MAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF-----------------------GKFGQRPAFLLVACVPLASL 177 (390)
T ss_pred HHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhCHHHHHHHHHHHHHHHH
Confidence 4567777777788888888888889998888887776 66789999999888776655
Q ss_pred HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHH
Q 042372 88 YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDI 167 (402)
Q Consensus 88 ~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (402)
+..++++|+++. . ++++++. ..+.++.+++ +. .+......++...
T Consensus 178 ~~~~~~~~~~~~--~-~~~~~~~-------------------------~~~~~~~l~~----~~---~~~~~~~~~l~~~ 222 (390)
T TIGR02718 178 VCVLWLKDRAVA--S-PEAPLAR-------------------------RASLFRFFRR----PL---AWSLLALALLSAM 222 (390)
T ss_pred HHHHHcCCCCcC--c-cccchhh-------------------------HHHHHHHHcC----cC---HHHHHHHHHHHHH
Confidence 554555443210 0 1100000 0011111111 11 1112222222223
Q ss_pred HHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHH-HhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH
Q 042372 168 AFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVA-LFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI 246 (402)
Q Consensus 168 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 246 (402)
.......+.+.++.+.|+++.+.+. ..... .+..+++.++.|++.||+|+|+.+..+..+..+....
T Consensus 223 ~~~~~~~~~~~~l~~~G~s~~~ig~------------~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~ 290 (390)
T TIGR02718 223 TAVSGFGLSKLYLVDAGWPLEWIGR------------LGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALL 290 (390)
T ss_pred HHHHHHHHhhHHHHhcCCCHHHHHH------------HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3334444567777888998886443 33333 3456677788999999999999988776654333222
Q ss_pred HHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch-hhhhhhHHHHHHHHHHHHH
Q 042372 247 LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA-RLRSTCHGISAAAGKAGAI 325 (402)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~ 325 (402)
.......... ... ...........+......+.......+..++ +.+++..++.+....+|..
T Consensus 291 ~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~ 354 (390)
T TIGR02718 291 WFAQAAFWLA---------------PGI-AVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL 354 (390)
T ss_pred HHHHHHcccC---------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH
Confidence 2111110000 111 1111111111111111122333444555555 8899999999999999999
Q ss_pred HHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372 326 VGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS 360 (402)
Q Consensus 326 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (402)
++|.+.+.+.+.. +++..|.+.+++.+++.++.
T Consensus 355 ~g~~~~G~l~~~~--G~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 355 IASSIAGYLTDRF--GYAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHh
Confidence 9999999999987 88888888777777665543
No 66
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.74 E-value=9.4e-16 Score=141.52 Aligned_cols=243 Identities=15% Similarity=0.098 Sum_probs=140.5
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +..+||+.|++.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL-----------------------VWFSWHAIFWVLALA 154 (377)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHcChHHHHHHHHHH
Confidence 345678999999999999999999999999999999998887 556899999987777
Q ss_pred HHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++. ++..+++||+++. . ++++.+.. ...+.++. ..++ +..+.....
T Consensus 155 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~--------------------------~~~~~~~~-~~~~--~~~~~~~~~ 202 (377)
T PRK11102 155 AILAAALVFFFIPETLPK--E-RRQPFHLR--------------------------TTIRNFAS-LFRH--KRVLGYMLA 202 (377)
T ss_pred HHHHHHHHHHhCCccCcc--c-ccCCCChH--------------------------HHHHHHHH-HHcC--hHHHHHHHH
Confidence 6664 3445567876421 0 00000000 00000011 1111 112222222
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.+......+....+.|.++.+ .|+++.+.+. ......++.+++.++.+++.||+|||+.+..+..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 270 (377)
T PRK11102 203 SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGY------------YFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQ 270 (377)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 233333344444555655544 7888775444 666777888888999999999999999988877654
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.+..+.+...... + ...+...+........ .....+....+..|..| +.|+++.++.+...
T Consensus 271 ~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 331 (377)
T PRK11102 271 FIMGIWLVVSALL--D---------------LGFWALVVGVAAFVGC-VSMISSNAMAVILDEFP-HMAGTASSLAGTLR 331 (377)
T ss_pred HHHHHHHHHHHHH--h---------------hhHHHHHHHHHHHHHH-HHHhhHHHHHHHhcccc-ccchHHHHHHHHHH
Confidence 4433322221100 0 1111122212122111 11122233345567776 78899988877664
Q ss_pred H-HHHHHHHHhH
Q 042372 321 K-AGAIVGAFGV 331 (402)
Q Consensus 321 ~-~g~~i~~~~~ 331 (402)
. ++..+++.+.
T Consensus 332 ~~~g~~~g~~~~ 343 (377)
T PRK11102 332 FGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHHHHH
Confidence 3 4455555443
No 67
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.74 E-value=2.6e-16 Score=148.18 Aligned_cols=251 Identities=17% Similarity=0.132 Sum_probs=148.1
Q ss_pred hHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 6 AVIMSEYA-NKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 6 ~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
.++..|.. ++++|++..++.+.+..+|.++++.+.+.+.....+ .....+||+.+++.+++++
T Consensus 121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~----------------~~~~~g~~~~~~i~~~l~~ 184 (437)
T TIGR00792 121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG----------------GDDKFGWFMFALVLALIGV 184 (437)
T ss_pred hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CcccccHHHHHHHHHHHHH
Confidence 35567777 578999999999999999988888777666533221 1145689999998887776
Q ss_pred HHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 85 LTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 85 ~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
+..+ ..+++||.++. .+.++ +++.+.++.++.. +++ +.++......+
T Consensus 185 ~~~~~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~l-~~~--~~~~~~~~~~~ 232 (437)
T TIGR00792 185 VSLIICFFGTKERYSE----IPKNI-------------------------EKKLSLKQIFKAL-FKN--DQLLILCLAYL 232 (437)
T ss_pred HHHHHHHcCCEecCCC----CCccc-------------------------ccCCCHHHHHHHH-hCC--HHHHHHHHHHH
Confidence 6544 44557775421 00000 0011111122211 111 12233333333
Q ss_pred HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372 164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI 242 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~ 242 (402)
......+....+.+.+.+. .+ ++.. .+.......++.+++.++.++++||+|||+.+..+..+.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 233 FYNLAFNIKNGVQVYYFTYVLG-DPEL------------FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHcchhheeEeeecC-ChHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3333444444444555543 22 2222 11244455778888888999999999999999888776666
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-------hhhhhhhHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-------ARLRSTCHGI 315 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~ 315 (402)
+.+.+.+.. .+.+.. .+.....+++.....+..+++.+|..+ ++.+|...|+
T Consensus 300 ~~~~~~~~~--------------------~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 358 (437)
T TIGR00792 300 GYLIFFFAG--------------------SNLPLI-LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV 358 (437)
T ss_pred HHHHHHHcc--------------------hhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence 655443321 111122 222222222222334456666677654 5567999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhc
Q 042372 316 SAAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 316 ~~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
.+....+|..+++.+.+.+.+..
T Consensus 359 ~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 359 RTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998765
No 68
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.73 E-value=3.5e-17 Score=149.46 Aligned_cols=246 Identities=19% Similarity=0.218 Sum_probs=153.0
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|++|+++|++++++...+..+|.++++.+++.+. +..+||+.|++.++.
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------------------~~~~~~~~~~~~~~~ 160 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI-----------------------SYFGWRWAFLISAIL 160 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------CHCHHCCHHHHHHHH
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh-----------------------hccccccccccccch
Confidence 456789999999999999999999999999999999999886 677899999998888
Q ss_pred HHHHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++..++ .++++++|+....+++++++ ++++++..+.++....++ .++.....
T Consensus 161 ~~~~~il~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~ 214 (352)
T PF07690_consen 161 SLIAAILFILFLPEPPPPRERESPKESE-----------------------SKKPKPLKPGFKSLFKNP---VLWILLIA 214 (352)
T ss_dssp HHHHHHHHHCCC---STTTT--SSTTTT-------------------------HHHCCCH-CTHHHHHH---CCHHHHHH
T ss_pred hhhhhhhHhhhhhhcccccccccccccc-----------------------cccccccccccccccccc---hhhhhhhh
Confidence 7776553 34566554321111111100 000001111111111111 11122233
Q ss_pred HHHHHHHHHHHHHhHhhh-hhhcCCc-hhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDI-YPATGIV-RKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
.+.....++....+.|.+ .+.+|++ ..+.+. ...+..+..+++.++.+++.||+++|+........
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (352)
T PF07690_consen 215 FFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGL------------LFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILL 282 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHhhcccchhhhhccCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 333334555677778887 4457777 454332 56677777777888999999999987777666554
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
..+..+.+...... .+.........+ .+.+.....+....+..|.+|++.|+++.|+.+..
T Consensus 283 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 343 (352)
T PF07690_consen 283 LILGALGLLLLPFS------------------SSPVWLIIALFL-IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSI 343 (352)
T ss_dssp HHHHHHHHCCSHHH------------------CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------------------hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44444433322110 111222222222 22233334567778889999999999999999999
Q ss_pred HHHHHHHHH
Q 042372 320 GKAGAIVGA 328 (402)
Q Consensus 320 ~~~g~~i~~ 328 (402)
..++..++|
T Consensus 344 ~~~~~~igP 352 (352)
T PF07690_consen 344 GSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHCC
Confidence 999999887
No 69
>PRK11043 putative transporter; Provisional
Probab=99.73 E-value=1.8e-15 Score=140.80 Aligned_cols=243 Identities=9% Similarity=0.058 Sum_probs=149.4
Q ss_pred hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
..+++.|++|+++|++..+.......+|.++++.+++.+. +..+||+.|++.++..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-----------------------~~~g~~~~~~~~~~~~~ 171 (401)
T PRK11043 115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL-----------------------NHFGWQAIFATLFAITL 171 (401)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hcCChHHHHHHHHHHHH
Confidence 3467899999999999999988889999999999999887 66789999998887777
Q ss_pred HHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372 85 LTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL 164 (402)
Q Consensus 85 ~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (402)
+..+..++++|+++. +++ ++. +.+.++.++++ ..+........
T Consensus 172 ~~~~~~~~~~~~~~~----~~~-~~~-------------------------~~~~~~~~~~~-------~~~~~~~~~~~ 214 (401)
T PRK11043 172 LLILPTLRLKPSKKA----RKQ-SQD-------------------------ALTFKQLLKSK-------TYLGNVLIFAA 214 (401)
T ss_pred HHHHHHHHcCCCCCc----ccc-chH-------------------------HHHHHHHHcCh-------hHHHHHHHHHH
Confidence 665555566665421 110 000 00111111111 11111122222
Q ss_pred HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372 165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~ 244 (402)
....++....+.|.+.++.|++....+. ......++.++|.++.+++.||+++|+.+.....+.+++.
T Consensus 215 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~------------~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~ 282 (401)
T PRK11043 215 CSAAFFAWLTGSPFILEQMGYSPADIGL------------SYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSV 282 (401)
T ss_pred HHHHHHHHHHHhHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 2334445556778888888888775443 4455566777788888999999999987665555444443
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372 245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA 324 (402)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~ 324 (402)
+.+........ ...+..... ....+.......+.......+..| +.|+++.|+.+..+..++
T Consensus 283 ~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~ 344 (401)
T PRK11043 283 IAIWLASLLSH----------------PSLVPLLIP-FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLC 344 (401)
T ss_pred HHHHHHHHhcc----------------CcHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHH
Confidence 33222211000 111222221 222222233334445555556666 579999999999988888
Q ss_pred HHHHHhHHHHhhh
Q 042372 325 IVGAFGVQYYTQK 337 (402)
Q Consensus 325 ~i~~~~~~~~~~~ 337 (402)
..++.+.+.+.+.
T Consensus 345 ~~~~~~~g~l~~~ 357 (401)
T PRK11043 345 FLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHccCC
Confidence 8888888888663
No 70
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.72 E-value=3.5e-16 Score=164.12 Aligned_cols=286 Identities=15% Similarity=0.013 Sum_probs=170.9
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
.|+..+++.|++|+++|++++++.+++..+|.++|+++++++. ...+|++.|++.++
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~-----------------------~~~~~~~~~~~~~~ 182 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT-----------------------ISGNFVILVALLMG 182 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH-----------------------hccccHHHHHHHHH
Confidence 4678899999999999999999999999999999999999998 66789999966666
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.+++.+++.+++|+++.- . .+.+.+. ... ....+.++.. .++ +.++...+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~-~~~----------------------~~~~~~~~~~-~~~--~~~~~~~~~ 233 (1140)
T PRK06814 183 IAVLGWLASLFIPKTGNA--A-PDLKIDR-NII----------------------RSTITLLKYA-KAD--KRIWLAILG 233 (1140)
T ss_pred HHHHHHHHHhhCCCCCCC--C-CCCeecc-chH----------------------HHHHHHHHHH-hcC--chHHHHHHH
Confidence 666666666777776421 0 1100000 000 0000011111 111 133333333
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.+...+.......++|.++++ +|.+....+. +.+...++.++|.++.|+++|+.++++.+..+.++.
T Consensus 234 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~------------~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 301 (1140)
T PRK06814 234 ISWFWLVGAVVLSQLPLLAKETLGGDENVATL------------FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLM 301 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH------------HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHH
Confidence 333344445566678888876 6777765444 777788888999999999998887766655555544
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
+++.+.+.+......... ..-.-........+.+. +.+..++.+++.....+...+++.+..|++.||+++|+.+++.
T Consensus 302 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~ 379 (1140)
T PRK06814 302 GLFGLDLAFASSSVPAEP-AQLKSILVFLSKRHGWR-ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLN 379 (1140)
T ss_pred HHHHHHHHhccccccccc-ccccchhhhhcccccHH-HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHH
Confidence 444433333100000000 00000000000011112 2222222233333334456678899999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHH
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNF 354 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (402)
.++..+++.+.+.+.+... ++...+++.+++.+
T Consensus 380 ~~~~~ig~~~~g~l~~~~~-~~~~~~~~~~~~~~ 412 (1140)
T PRK06814 380 AAFMVAGTIILALLQALGF-SIPWIILFIALANL 412 (1140)
T ss_pred HHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 9999999999888875322 44555554444333
No 71
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.72 E-value=2.4e-15 Score=138.86 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=105.8
Q ss_pred HHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372 171 TINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR 250 (402)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 250 (402)
....+.|.+.++.|.+....+. ......++.+++.+..|++.||+|+|+.+..+.....++...+. .
T Consensus 218 ~~~~~lp~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~ 284 (381)
T PRK03633 218 SLYGLMPLYLNHQGMSDASIGF------------WMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S 284 (381)
T ss_pred HHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h
Confidence 3445678888888887765433 56666778888888999999999999988877666555443322 1
Q ss_pred hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHh
Q 042372 251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFG 330 (402)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~ 330 (402)
.. ....... ..+.......+...++..|..|++.++...+..+....+|.+++|.+
T Consensus 285 ---------------------~~--~~~~~~~-l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~ 340 (381)
T PRK03633 285 ---------------------QA--AMAPALF-ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSF 340 (381)
T ss_pred ---------------------hH--HHHHHHH-HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1111111 11222233456666777898988888888888888889999999999
Q ss_pred HHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372 331 VQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
.+++.+.. ++...|.+.+.+.++..+..+.
T Consensus 341 ~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 341 TAMLMQNY--SDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHh--CccHHHHHHHHHHHHHHHHHHh
Confidence 99999887 7888888877777766554443
No 72
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.72 E-value=6.2e-16 Score=162.73 Aligned_cols=279 Identities=10% Similarity=-0.044 Sum_probs=161.3
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh-h
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG-A 80 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~-~ 80 (402)
.|+..+++.|++|+++|++++++.+.+..+|.++++.+++++....... +.....+|++.+.+. .
T Consensus 121 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~ 186 (1146)
T PRK08633 121 SPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGN--------------TPSEILGRIAPAGLVLL 186 (1146)
T ss_pred chHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cccccccchHHHHHHHH
Confidence 3566789999999999999999999999999999999999887321100 000122344444443 3
Q ss_pred HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
+.+++.+++.+++||+|.... .+.+.+.. .......+.++. .+++ +.++...+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~-l~~~--~~~~~~~~ 239 (1146)
T PRK08633 187 AVAVLGLIFAYRLPKVPAAAP--EVFDKKKY----------------------LFPKLLWRNLKL-LRSD--RVLWLAII 239 (1146)
T ss_pred HHHHHHHHHHhcCcCCCCCCc--cccccccc----------------------ccHHHHHHHHHH-HhcC--cHHHHHHH
Confidence 334445555666888875411 11000000 000000001111 1111 12222222
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchh-hhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRK-AAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
..++.....+....+.|.++.+ +|++.. ..+. +.....++.+++.++.+++.||+++++.+.++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~------------~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~ 307 (1146)
T PRK08633 240 GLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQY------------LLAASAIGIGIGSLLAGRLSGRHIELGLVPLGAL 307 (1146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHH------------HHHHHHHHHHHHHHHHHHHhCCceEccchhHHHH
Confidence 2222223333444556666654 777766 4433 6666778888899999999999999988887777
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
+.+++.+++... .+. ...++..++.+++.....+...+++.+..|++.|++++|+.++
T Consensus 308 ~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~ 365 (1146)
T PRK08633 308 GLALSLFLLPTA---------------------PSL-ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF 365 (1146)
T ss_pred HHHHHHHHHHHh---------------------hhH-HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence 666665555442 111 2222222222222333334556777899999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHH
Q 042372 319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLG 356 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (402)
+..++.++++.+.+.+... +.++...+++.+.+.++.
T Consensus 366 ~~~lg~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 366 LQNVGMLLFLALTTLFSGL-GLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHH
Confidence 9999988887776665442 113444455544444433
No 73
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.72 E-value=7.7e-16 Score=143.49 Aligned_cols=176 Identities=11% Similarity=0.024 Sum_probs=113.6
Q ss_pred HHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372 171 TINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR 250 (402)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 250 (402)
....+.+.+.++.|.++.... .......+....+..+..+++.+..|+++||+|||+++.++.++.++...++...
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~----~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~ 301 (418)
T TIGR00889 226 ITNIFGNGFLHEFGRNPEFAD----SFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG 301 (418)
T ss_pred HHHHhHHHHHHHhcccccccc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 344555777777665542110 0000123336666777888888899999999999999999887777665554442
Q ss_pred hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH-HHHHHHHHHHHH
Q 042372 251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA-AAGKAGAIVGAF 329 (402)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~i~~~ 329 (402)
.. . .......++..+..+.+.....+....++.|.+|++.|+++.|+.+ ....+|.+++|.
T Consensus 302 ~~----~--------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~ 363 (418)
T TIGR00889 302 DP----E--------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYI 363 (418)
T ss_pred Cc----c--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 10 0 1011112222222222222223455567899999999999999997 567889999999
Q ss_pred hHHHHhhhcC----CCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372 330 GVQYYTQKGD----KQIKQSIIALAVVNFLGFLCSFM-VPETNG 368 (402)
Q Consensus 330 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-l~et~~ 368 (402)
+.+.+.+..+ .+|+..|.+.+++.+++.++.++ ++|+++
T Consensus 364 l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 364 LSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999998753 15888898888887777666664 476643
No 74
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.71 E-value=8.7e-16 Score=141.86 Aligned_cols=262 Identities=10% Similarity=0.052 Sum_probs=154.5
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|...+++.++ .++|++..+.......+|.+++|.+++.+. +.+|||..|++.++.
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~-----------------------~~~g~~~~f~~~~~~ 167 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV-----------------------SWFGEQAILWILTAG 167 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH-----------------------HHcChhHHHHHHHHH
Confidence 4444566665 456888888888888999999999999997 667899999887765
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
.++..+..++.||.++. +++++. .++...+.++. +|+ +.++......
T Consensus 168 ~~~~~~~~~~~~~~~~~-----~~~~~~---------------------~~~~~~~~~~i-----~~~--~~~~~~~~~~ 214 (382)
T PRK11128 168 VASMLLGQLLRPTIMPQ-----GESRQQ---------------------ESAGWPAWKAL-----LKE--PTVWRFLLCV 214 (382)
T ss_pred HHHHHHHHHccCCCCCc-----cccccc---------------------cccccchHHHH-----HcC--hhHHHHHHHH
Confidence 55444444445553211 000000 00001111111 111 1233333333
Q ss_pred HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI 242 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~ 242 (402)
+.....+.....+.|.+.++.|.+....+. ......++.++..++.+++.||+|+|+.+..+.+..++
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 215 SLLQGSHAAYYGFSAIYWQAAGYSASTIGY------------LWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVV 282 (382)
T ss_pred HHHHHHhHhHHHHHHHHHHHCCCCHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 333333444555667777778888765443 45566677788888999999999999998888777666
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH-HH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA-GK 321 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~ 321 (402)
..+.+... ++.+..++ ..++.+.......+....+..+. +++.+++..++.+.. ..
T Consensus 283 ~~~~~~~~---------------------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 339 (382)
T PRK11128 283 RWGLMGST---------------------TALPWLIV-IQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMG 339 (382)
T ss_pred HHHHHHhh---------------------hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHH
Confidence 65544332 22222222 22222221111233444555665 555568888877644 45
Q ss_pred HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372 322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS 360 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (402)
+|..++|.+.|.+.+.. ++ ..++..+++.+++.++.
T Consensus 340 ~g~~ig~~i~G~l~~~~--g~-~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 340 GSIAIMTVLSGFLYQHL--GA-GVFWVMALVALPALFIR 375 (382)
T ss_pred HHHHHHHHHHHHHHHhc--cH-HHHHHHHHHHHHHHHHH
Confidence 67789999999999987 54 45665565555554443
No 75
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.71 E-value=3.6e-16 Score=146.35 Aligned_cols=260 Identities=14% Similarity=0.036 Sum_probs=150.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHHHHHHhhc-C
Q 042372 16 RTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKM-P 94 (402)
Q Consensus 16 ~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~~~~~~~l-p 94 (402)
++|++..+.......+|.++++.+++.+. . .+||++|++.++.+++.++..+++ +
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~-----------------------~-~~~~~~f~~~~~~~~~~~~~~~~~~~ 192 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILF-----------------------N-INPQINFWLGSGSALILLVLLFFAKP 192 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHH-----------------------h-cCchHhHHHHHHHHHHHHHHHhcccc
Confidence 45677888888888999999999998885 2 379999999887777655555444 3
Q ss_pred CCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042372 95 ETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINL 174 (402)
Q Consensus 95 esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (402)
|.|+. . +.++++. + + +++...++ .+ ..+|++ .++......+.....+.....
T Consensus 193 ~~~~~--~-~~~~~~~-----------------~--~--~~~~~~~~-~~-~~l~~~--~~~~l~l~~~~~~~~~~~~~~ 244 (420)
T PRK09528 193 DAPST--A-KVANALG-----------------A--N--ASAVSLKD-AL-ALLKLP--KFWFLVLYVIGVACFYDVFDQ 244 (420)
T ss_pred cccch--h-hhccchh-----------------c--c--cccccHHH-HH-HHccCC--CeEeehHHHHHHHHHHHHHHH
Confidence 33221 0 0000000 0 0 00000000 01 111111 111111111111122222222
Q ss_pred hHhhhhhh----cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372 175 TQKDIYPA----TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR 250 (402)
Q Consensus 175 ~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 250 (402)
+.|.++.+ .+.+....+ ....+..++..++.++.|++.||+|||+.+..+.++.++..+++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~ 312 (420)
T PRK09528 245 QFPNFFASFFATPEQGTRVFG------------YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA 312 (420)
T ss_pred HHHHHHHHHHhccCcchHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc
Confidence 34444433 233333222 25555566777888899999999999999888877766665555442
Q ss_pred hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHH-HHHHHHHHHHHHHH
Q 042372 251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGI-SAAAGKAGAIVGAF 329 (402)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~g~~i~~~ 329 (402)
.+.+..+. .....+.......+....+..|.+|++.|++..+. .++...+|.++++.
T Consensus 313 ---------------------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~ 370 (420)
T PRK09528 313 ---------------------TGPLEVSI-LKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST 370 (420)
T ss_pred ---------------------ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence 22222222 22222221112222344677888999999988765 56778899999999
Q ss_pred hHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 330 GVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+.+++.+.. ||+..|.+.+++.++..++.++.
T Consensus 371 ~~G~l~~~~--G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 371 LAGNLYDSI--GFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHhh--CchHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 89999998888877766665544
No 76
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.71 E-value=1.3e-15 Score=141.40 Aligned_cols=262 Identities=15% Similarity=0.191 Sum_probs=150.5
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|...+++.|++|+++|+++.++......+|..+++.+++.+. .++||+.|++.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~------------------------~~g~~~~f~~~~~~ 173 (400)
T PRK11646 118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL------------------------QYDFRLVCATGAVL 173 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhhHHHHHHHHHHH
Confidence 445678899999999999999999999999999999999885 24799999998776
Q ss_pred HHHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++.. +..+++||.+. ++.+++. +.+. + ...+++ .++.....
T Consensus 174 ~~~~~i~~~~~~~~~~~-----~~~~~~~-------------------------~~~~----~-~~~~~~--~~~~~~~~ 216 (400)
T PRK11646 174 FVLAAAFNAWLLPAYKL-----STVRTPV-------------------------REGM----T-RVLRDK--RFVTYVLT 216 (400)
T ss_pred HHHHHHHHHHhCCcccc-----cccchhh-------------------------HHHH----H-HHHcCc--hHHHHHHH
Confidence 65543 33445665311 0000000 0000 1 111111 11111112
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-cccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLI-DRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~~~~~~~~~ 240 (402)
.+...........+.|.+.++.+.++...+. ......+....+....+++. ||++.++.+..+..+.
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~------------l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 284 (400)
T PRK11646 217 LTGYYMLAVQVMLMLPIMVNDIAGSPSAVKW------------MYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIM 284 (400)
T ss_pred HHHHHHHHHHHHHhhhhhHHhhcCCchHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2222222223345678888876655554332 33333333333333334444 4566566666666555
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
+++..++... ++.+.... .....+.+.....+...++..+..|++.|+++.|+.+...
T Consensus 285 ~~~~~~l~~~---------------------~~~~~~~~-~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~ 342 (400)
T PRK11646 285 SLSMFPIGMV---------------------SNLQQLFT-LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGL 342 (400)
T ss_pred HHHHHHHHHh---------------------hhHHHHHH-HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHH
Confidence 5555444332 11112211 1111222222233455567789999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCC--CchhhhHHHHHHHHHHHHH
Q 042372 321 KAGAIVGAFGVQYYTQKGDK--QIKQSIIALAVVNFLGFLC 359 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 359 (402)
.+|..++|.+.+.+.+..+. ....++++.+++.+++.+.
T Consensus 343 ~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 343 ALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999887521 1335555545555555444
No 77
>PRK10054 putative transporter; Provisional
Probab=99.71 E-value=1.9e-15 Score=140.06 Aligned_cols=262 Identities=9% Similarity=0.047 Sum_probs=153.9
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|...++..|..|+++|+++.++.....++|.++++.+++.+. . .+||.+|++.++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~-----------------------~-~g~~~~f~~~~~~ 170 (395)
T PRK10054 115 TVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV-----------------------M-QSINLPFWLAAIC 170 (395)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------H-hccCcHHHHHHHH
Confidence 345677889999999999999999999999999999999875 2 4799999988777
Q ss_pred HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++.++ ..+++||+++. ++++++. ....++.++++ .++.....
T Consensus 171 ~~i~~i~~~~~~~~~~~~----~~~~~~~-------------------------~~~~~~~~~~~-------~~~~~~~~ 214 (395)
T PRK10054 171 SAFPLVFIQIWVQRSEKA----IATETGS-------------------------VWSPSVLLQDK-------ALLWFTCS 214 (395)
T ss_pred HHHHHHHHHHHHhccccc----cccchhh-------------------------hhhhhhhccCc-------eehHHHHH
Confidence 666543 34446654321 1000000 00000111111 12222222
Q ss_pred HHHHHHHHHHHHHhHhhhhh---hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYP---ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
.++....+.....+.+.+.. +.+.+... .+.......+...+.....+.+.||.++|+.+..+..
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 282 (395)
T PRK10054 215 GFLASFVSGAFASCISQYVMVVADSDFAEKV------------VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTL 282 (395)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhcccchHHHH------------HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHH
Confidence 22222222222223333332 23333322 1224445555556666778899999999998888876
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
+..++...+.... ++. ....+.....+.+.....+....++.+..|++.|+++.+..+
T Consensus 283 ~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~- 340 (395)
T PRK10054 283 CFVIGLVGFIFSG--------------------NSL-LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS- 340 (395)
T ss_pred HHHHHHHHHHHcc--------------------hHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-
Confidence 6666554443320 111 222222222232233333455567788899999999988654
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372 319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS 360 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (402)
..++|..+||.+.+.+.+.. +....|++.+++..+..++.
T Consensus 341 ~~~~G~~~Gp~~~G~l~~~~--g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 341 LGWLGAAINPLVSGVILTTL--PPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHc--ChhhHHHHHHHHHHHHHHHH
Confidence 67789999999999999987 66666766555544444433
No 78
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.71 E-value=3.1e-15 Score=141.30 Aligned_cols=271 Identities=11% Similarity=0.012 Sum_probs=174.7
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
|+-.+++.|..|+++...+.++.+...++..++||.+++.+. ...|-.+.|++.++.
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv-----------------------a~~G~~~~f~inals 178 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV-----------------------AFFGAAAAFLINALS 178 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH-----------------------HHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999988 445567788887665
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
-++.++....++..++. ++..++.-.+.+ ++-++.....+..+..+.. .
T Consensus 179 fl~~i~~l~~~~~~~~~---~~~~~e~~~~~l-------------------------~~G~ryv~~~~~l~~~l~~---~ 227 (524)
T PF05977_consen 179 FLISILALLRWKPPPPP---SSLPRERFFSAL-------------------------REGLRYVRSSPPLRSVLLR---S 227 (524)
T ss_pred HHHHHHHHHHccccccc---cccchhhhhhhH-------------------------HHHHHHHhcchHHHHHHHH---H
Confidence 44444333333322110 011111100001 1111111111111112221 1
Q ss_pred HHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
+............+|.+.++ +|.++...|+ +....+++.++|+++.+++.+|+++++++..+.++.+
T Consensus 228 ~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGl------------l~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a 295 (524)
T PF05977_consen 228 FLFNLFASAVWALLPLFARDVLGGGASGYGL------------LLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFA 295 (524)
T ss_pred HHHHHhhhHHHHhhhHHHHHHhCCcHHHHHH------------HHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHH
Confidence 12222222333446777765 6777665554 7788899999999999999999999888888877777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 321 (402)
++++.+++. .+.+. ..+..+..+++.........+...+..|++.||++.+++++...
T Consensus 296 ~~~~~lal~---------------------~~~~~-~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~ 353 (524)
T PF05977_consen 296 LALLLLALS---------------------PSFWL-ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF 353 (524)
T ss_pred HHHHHHhcc---------------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence 766666553 22222 22222233333333344555677899999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.+..+|..+.|.+.+.. +.+..+.+.++..+++.++.+..
T Consensus 354 g~~~lGsll~G~la~~~--g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 354 GGMPLGSLLWGFLADHF--GVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988 77888877777666666655533
No 79
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.70 E-value=4.1e-15 Score=132.59 Aligned_cols=267 Identities=12% Similarity=-0.032 Sum_probs=161.4
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+.+..|+++..|++++.+.+++.+.+.++|.+++|.+++.+......+... ..+........||+++++.+..
T Consensus 29 ~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~yl~ia~~ 101 (310)
T TIGR01272 29 VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM-------QVATANAEAAKVHTPYLLLAGA 101 (310)
T ss_pred hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh-------hhhhhhHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999887321100000 0000000125799999965544
Q ss_pred HHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 83 AALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 83 ~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
.++..+.+.+ +||..+ ++.++. .+. + ... ++..+++ +..+...+
T Consensus 102 ~~~~~i~~~~~~~p~~~~------~~~~~~----------------~~~-~----~~~-----~~~~~~~--~~~~l~~~ 147 (310)
T TIGR01272 102 LAVLAIIFAFLPLPELQE------ADVARV----------------SSG-D----TTQ-----KTSAFQF--THLVLGAL 147 (310)
T ss_pred HHHHHHHHHHccCCCCCc------cccccc----------------ccc-c----ccc-----hhhHHhh--HHHHHHHH
Confidence 3333333223 455311 100000 000 0 000 0111111 12333344
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh---cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA---TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGF 237 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~ 237 (402)
..++......+...|.+.|+.+ .|+++.+.+. .......+.++|.++++++.||+|+|+.+.++.
T Consensus 148 ~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~------------~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~ 215 (310)
T TIGR01272 148 GIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAH------------FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA 215 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4444444555677788888864 4777775544 777888889999999999999999999888776
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH
Q 042372 238 LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA 317 (402)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 317 (402)
.+.+++.++.... ....... .....+++.....|...+...+.+|++ .+++.++.
T Consensus 216 ~l~~~~~~l~~~~---------------------~~~~~~~--~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~- 270 (310)
T TIGR01272 216 FLAVLLSIGAALT---------------------HGYVAMW--FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL- 270 (310)
T ss_pred HHHHHHHHHHHHc---------------------CCHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-
Confidence 6666554333321 1111111 122233444555667777777877764 35666664
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCchhhhHHH
Q 042372 318 AAGKAGAIVGAFGVQYYTQKGDKQIKQSIIAL 349 (402)
Q Consensus 318 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 349 (402)
..+.+|+++.|.+.|.+.+.. +.+.++++.
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~--g~~~a~~v~ 300 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCL--GIQLAFALP 300 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhc--cchHHHHHH
Confidence 677899999999999999877 666766643
No 80
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.69 E-value=1.4e-14 Score=135.55 Aligned_cols=295 Identities=16% Similarity=0.127 Sum_probs=192.0
Q ss_pred hHHhhhhccccch--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccc
Q 042372 6 AVIMSEYANKRTR--------------------------GAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRN 59 (402)
Q Consensus 6 ~~~i~e~~~~~~r--------------------------g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~ 59 (402)
.+++.|.++++++ ++..+.-.....+|.++..++...+....+..
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--------- 218 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--------- 218 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---------
Confidence 4678888888888 99999888888888888888777765322110
Q ss_pred cccccCCCCCcchhHHHHHhhHH-HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcc
Q 042372 60 HVLSAQPQGDYLWRIVLMFGAVP-AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEAS 138 (402)
Q Consensus 60 ~~~~~~~~~~~~Wr~~f~~~~i~-~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (402)
......-|..+.+.++. .+..+...+++||.|+.. ..++...-...-.+ .
T Consensus 219 ------~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~-~~~~~~~~~~~g~~----------------------~ 269 (477)
T PF11700_consen 219 ------ASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPR-PLPSGSSYLRFGFK----------------------R 269 (477)
T ss_pred ------cccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCcchhHHHHHHH----------------------H
Confidence 11344568888887765 445666777789887520 00111110000000 0
Q ss_pred cccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 042372 139 TYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGY 217 (402)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~ 217 (402)
.++.+++ .+ +.+......+.+++..-+...+......|.. .+|++..+... ......+..++|+
T Consensus 270 l~~t~k~--~~-~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~------------~~l~~~i~a~~Ga 334 (477)
T PF11700_consen 270 LWRTFKE--IR-KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIV------------FGLVVQIVAIIGA 334 (477)
T ss_pred HHHHHHH--HH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHH------------HHHHHHHHHHHHH
Confidence 1111111 11 2234444555556555566666666677766 58999886444 6777788889999
Q ss_pred hhhhhhccccchh--HHHHHHHHHHHHHHHHHHH--hhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCc
Q 042372 218 WFTVFLIDRIGRF--IIQLGGFLLMSICMAILGA--RYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPN 293 (402)
Q Consensus 218 ~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (402)
++.|++.||+|.| ++++++..+..+..+.-.+ ....... .+.+. ..++.+..+.+..+..
T Consensus 335 ~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~---------------~~~~~-f~~~a~~~G~~~G~~q 398 (477)
T PF11700_consen 335 LLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL---------------KSPWE-FWVLAVLIGLFMGGIQ 398 (477)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc---------------ccHHH-HHHHHHHHHHHhhhHH
Confidence 9999999999998 7776665544333222111 1110000 12222 2233334444455667
Q ss_pred ccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCC
Q 042372 294 STTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLS 370 (402)
Q Consensus 294 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~ 370 (402)
+..-++.+|+.|+...+...|++...+...+++||++++.+.+.++ +.+..+....++.+++.++.++++..+++.
T Consensus 399 s~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 399 SASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 7788888999999999999999999999999999999999999986 588888888888888888888776655543
No 81
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.67 E-value=6.6e-15 Score=134.69 Aligned_cols=242 Identities=13% Similarity=0.077 Sum_probs=148.7
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA 83 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~ 83 (402)
....++.|++| ++|+++.++++.+..+|..+++.+++.+... ...+||+.|.+.++..
T Consensus 107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~---------------------~~~~w~~~f~~~~~~~ 164 (355)
T TIGR00896 107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH---------------------SGGHWQQALAWWALPA 164 (355)
T ss_pred cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hhhhHHHHHHHHHHHH
Confidence 45567788886 6899999999999999999999998877621 1124999988766554
Q ss_pred HHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 84 ALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 84 ~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
++..+ .++||+++. +++ ++ ...+...++.++++ ..+......+
T Consensus 165 ~~~~~--~~~~~~~~~----~~~-~~-----------------------~~~~~~~~~~~~~~-------~~~~~~~~~~ 207 (355)
T TIGR00896 165 LLALL--AWIPQVRRR----VAA-NQ-----------------------TTTRLTPVRIWRSP-------LAWQVTVFFG 207 (355)
T ss_pred HHHHH--HHhhhhccc----cCC-CC-----------------------CCCCCCCchhhcCH-------hHHHHHHHHH
Confidence 43322 234543210 000 00 00001111222221 2233333334
Q ss_pred HHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-chhHHHHHHHHHHHH
Q 042372 164 LLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-GRFIIQLGGFLLMSI 242 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~ 242 (402)
.....++....+.|.++++.|++....+. ......++.+++.++.|++.||+ +||+.+.++..+.++
T Consensus 208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~------------~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 208 LQSGLYYSLIGWLPAILISHGASAATAGS------------LLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 44455667778889999888888765444 66777888899999999999999 566666666666666
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeeccc-CchhhhhhhHHHHHHHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAEL-FPARLRSTCHGISAAAGK 321 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~~ 321 (402)
+.+.+.... ... ... .....+.+.....+.......+. .+++.++...++.+....
T Consensus 276 ~~~~~~~~~--------------------~~~-~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (355)
T TIGR00896 276 GLCGLLFAP--------------------MHG-LWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGY 332 (355)
T ss_pred HHHHHHHhh--------------------hhH-HHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 554444321 111 111 11222222233333433444443 446777899999999999
Q ss_pred HHHHHHHHhHHHHhhhcC
Q 042372 322 AGAIVGAFGVQYYTQKGD 339 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~ 339 (402)
++.+++|.+.+.+.+..+
T Consensus 333 ~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 333 LLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998774
No 82
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6.3e-16 Score=145.29 Aligned_cols=299 Identities=12% Similarity=0.101 Sum_probs=191.4
Q ss_pred hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
+.+++.. +.+|+|+.+.|+..++.++|.++-+.+.-.+. +..|||+.+++.+.+.+
T Consensus 156 aiviv~~-YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~-----------------------~~~G~r~~~l~~~~~~l 211 (509)
T KOG2504|consen 156 AVVILGT-YFEKKRALATGIAVSGTGVGTVVFPPLLKYLL-----------------------SKYGWRGALLIFGGISL 211 (509)
T ss_pred hhhhhhh-HhHHHHHHHHhhhhccCCcceeeHHHHHHHHH-----------------------HHhCcHHHHHHHHHHHH
Confidence 3445554 44779999999999999999999999888887 77899999988766665
Q ss_pred HHHHHHhhc-CCCchhHhhhcCCHHHHHHHHHHhhc---ccccccc---------------CCCCCCCCCCc--ccccch
Q 042372 85 LTYYWRMKM-PETARYTALVEGNQKKAAVDMAKVLD---TDINVAT---------------SAYPAPVSPEA--STYGLF 143 (402)
Q Consensus 85 ~~~~~~~~l-pesp~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------~~~~~~~~~~~--~~~~~~ 143 (402)
-.++....+ |.+++- ++. .++..+....... .+.+... .+.++.+++.. .....+
T Consensus 212 ~~~~~~~~~rp~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (509)
T KOG2504|consen 212 NVLVAGALLRPLSPPK---KPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFL 287 (509)
T ss_pred HHHHHHHHcCCCCcCC---Cch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhh
Confidence 544443333 333321 011 1111000000000 0000000 00000000000 111111
Q ss_pred ---hhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhh
Q 042372 144 ---SKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFT 220 (402)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~ 220 (402)
..+.++. +.++...+...+...+++....++|.+..+.|++..+... ...+.++..+++.++.
T Consensus 288 ~~~d~~ll~~--~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~------------l~Siigi~~i~gRi~~ 353 (509)
T KOG2504|consen 288 SMLDLSLLKD--PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAF------------LLSIIGVSDIIGRIIL 353 (509)
T ss_pred hhhhHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHH------------HHHHHHHhhhhhhhhh
Confidence 1333333 3566666677777788899999999999999999887665 7888899999999999
Q ss_pred hhhccccch--hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCccccee
Q 042372 221 VFLIDRIGR--FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFI 298 (402)
Q Consensus 221 g~l~dr~gr--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (402)
|++.|+... +.+..++.++.+++...+... .+. ..+..+.+..++...........
T Consensus 354 G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~---------------------~~~-~~l~~~~~~fG~~~g~~~~l~~~ 411 (509)
T KOG2504|consen 354 GLLADKPGIRALVLFLLTLLIAGLARLFLPFA---------------------TTY-VGLIVFSILFGFCVGSFSSLTPV 411 (509)
T ss_pred hhhcCccccchHHHHHHHHHHHHHHHHHHHHh---------------------ccH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999883 444445544444444333332 222 23333333333333333334445
Q ss_pred eecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc-cCCC
Q 042372 299 VPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP-ETNG 368 (402)
Q Consensus 299 ~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-et~~ 368 (402)
.+.|+.+.+.-+.+.|+...+..++..+||.+.+++.+..+ +|...|...+++.+++.++.+..+ +.+.
T Consensus 412 i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~ 481 (509)
T KOG2504|consen 412 ILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSAVLLLILRECLKR 481 (509)
T ss_pred HHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHHHHHHHhHHHHHh
Confidence 77899999999999999999999999999999999999885 599999999999999888877766 4433
No 83
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.65 E-value=7.1e-15 Score=135.06 Aligned_cols=254 Identities=14% Similarity=0.092 Sum_probs=141.3
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHH-HhhH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLM-FGAV 81 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~-~~~i 81 (402)
+....+++|++|+++|+++.++......+|..+++.++..+......+.+ .....+||+.|+ ..++
T Consensus 109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~-------------~~~~~~w~~~~~~~~~~ 175 (366)
T TIGR00886 109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAG-------------LPAHLAWGWAFVIVPAG 175 (366)
T ss_pred HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-------------ccccccccchhHHHHHH
Confidence 34567899999999999999999988888888888877766532211100 113458999994 4343
Q ss_pred H-HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 P-AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~-~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
. .++.++...+.+|+|+. ++++++. + ...+... .++....+ .+ +.+++ +.++....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~----~~~~~~~-~---------~~~~~~~-----~~~~~~~~-~~-~~~~~--~~~~~~~~ 232 (366)
T TIGR00886 176 ILLLPALLIFFVGADTPPG----KPATGKL-S---------FKGARWS-----VGTGALGD-QL-KVFRD--RHTWILAL 232 (366)
T ss_pred HHHHHHHHHHHhcccCCcc----cccchhc-c---------ccccccc-----ccchhHHH-HH-HHHhc--cchhhHHH
Confidence 3 34444555566776642 1110000 0 0000000 00000000 01 11111 12333333
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
..+......+....+.|.++++ +|+++.+.+. ......+..+++.++.|+++||+|||+.+..+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 300 (366)
T TIGR00886 233 LYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGA------------YASLGGLLGSLARPLGGAISDRLGGARKLLMSFLG 300 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH------------HHHHHHHHHHHHhhccchHHHhhccchhHHHHHHH
Confidence 3344444555666777888865 6887765443 56666777788888999999999998877776655
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
...+..++..... .. .+.............+.+. ..+..+.+..+..| +.++++.|+.+..
T Consensus 301 ~~~~~~~~~~~~~---~~--------------~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 361 (366)
T TIGR00886 301 VAMGAFLVVLGLV---SP--------------LSLAVFIVLFVALFFFSGA-GNGSTFALVPHIFR-RATGAVSGLVGAI 361 (366)
T ss_pred HHHHHHHHHhcCC---Cc--------------chHHHHHHHHHHHHHHhcc-ccchhhhcchhhch-hhcccHHHHHHHh
Confidence 5554444433211 00 0122222222222222222 23456677788887 6889999999888
Q ss_pred HHHH
Q 042372 320 GKAG 323 (402)
Q Consensus 320 ~~~g 323 (402)
+++|
T Consensus 362 ~~~g 365 (366)
T TIGR00886 362 GNLG 365 (366)
T ss_pred ccCC
Confidence 7765
No 84
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.65 E-value=4.5e-14 Score=131.55 Aligned_cols=258 Identities=13% Similarity=0.020 Sum_probs=142.9
Q ss_pred hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
..+++.|++|+++|++++++...+..+|.++++.+++.+. +..+||+.|++.++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~-----------------------~~~gw~~~f~~~~~~~~ 181 (413)
T PRK15403 125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM-----------------------HFVHWKVLFAIIAVMGL 181 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhcCHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999998886 55789999999888777
Q ss_pred HHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 85 LTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 85 ~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
+.++. .+++||+++. ++++.+... ..+.++ ..+++ +.++.......
T Consensus 182 i~~~~~~~~lp~~~~~----~~~~~~~~~--------------------------~~~~~~-~ll~~--~~~~~~~l~~~ 228 (413)
T PRK15403 182 IAFVGLLLAMPETVKR----GAVPFSAKS--------------------------VLRDFR-NVFRN--RLFLTGAATLS 228 (413)
T ss_pred HHHHHHHHhCCCCccc----cCCCCChHH--------------------------HHHHHH-HHHcC--HHHHHHHHHHH
Confidence 65543 4568887531 111000000 000001 11111 13333333344
Q ss_pred HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-cccchhHHHHHHHHHHH
Q 042372 164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLI-DRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~~~~~~~~~~ 241 (402)
.....++....+.|.++++ .|++..+.+. .......+.++++.+.+.+. |+.++|. ......+..
T Consensus 229 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl------------~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~ 295 (413)
T PRK15403 229 LSYIPMMSWVAVSPVILIDAGGMTTSQFAW------------TQVPVFGAVIVANAIVARFVKDPTEPRF-IWRAVPIQL 295 (413)
T ss_pred HHHHHHHHHHHhChHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhccCCchhH-HHHHHHHHH
Confidence 4445556666778888876 5788776544 44444555566666666655 4444443 322222222
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccce--eeecccCchhhhhhhHHHHHHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTF--IVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
++..++...... . . ...+.......+. +.+.....+... ++... ...+|++.++.+..
T Consensus 296 ig~~l~~~~~~~-~-~--------------~~~~~~~~~~~l~-~~G~~~~~p~~~~~al~~~---~~~~G~a~a~~~~~ 355 (413)
T PRK15403 296 VGLALLIVGNLL-W-P--------------HVWLWSVLGTSLY-AFGIGLIFPTLFRFTLFSN---NLPKGTVSASLNMV 355 (413)
T ss_pred HHHHHHHHHHHH-c-c--------------ccHHHHHHHHHHH-HHHHHHHhHHHHHHHhccC---CCCCcHHHHHHHHH
Confidence 222222221100 0 0 1111111111111 111111222222 22112 22378999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHH
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNF 354 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (402)
...+..+++...+++... +-...|...+++..
T Consensus 356 ~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~ 387 (413)
T PRK15403 356 ILMVMAVSVEIGRWLWFN---GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHH
Confidence 988888999888888765 34455554444433
No 85
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.2e-15 Score=135.75 Aligned_cols=262 Identities=13% Similarity=0.096 Sum_probs=143.0
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
.|+++++++|.+|..+|++.+++++.+.++|..+|.+.+..+.+ ....|||.|+..++
T Consensus 139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~----------------------~~~~Wr~af~~~av 196 (493)
T KOG1330|consen 139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS----------------------LTFWWRWAFRGSAV 196 (493)
T ss_pred cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc----------------------CccceEEEEEeehH
Confidence 37889999999999999999999999999999999999888762 22239999999998
Q ss_pred HHHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHh-hhhhHHHHHHH
Q 042372 82 PAALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFV-QKHGLHLLGTT 159 (402)
Q Consensus 82 ~~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (402)
++++. ++..++++|.+|- ..++. + .+. +......+.++.++.... +......+...
T Consensus 197 l~vi~~~L~~~f~~eP~rg------a~~~~------------~---~~~-~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~ 254 (493)
T KOG1330|consen 197 LGVIVGLLVFLFVREPERG------ARDEV------------D---GEN-KMVKPFTSVWKDLKVLAKIKVFVLSSLGII 254 (493)
T ss_pred HHHHHHHHHHhhccCcccc------ccccc------------c---cCC-cCCCCccchHHHHHHHHccCceeeehHHHH
Confidence 88875 4556667775421 11110 0 000 001112222222222211 11111222222
Q ss_pred HHHHHHHHHHHHHHHhHhhhhh----hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh-----
Q 042372 160 STWFLLDIAFYTINLTQKDIYP----ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF----- 230 (402)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr----- 230 (402)
...+..+ ++..|.|.+.. -.|++.. .+.+...+...++.+|.+++|.++||+.|+
T Consensus 255 a~~fv~G----s~sww~p~~~~~~~~~~~~~~~------------~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~ 318 (493)
T KOG1330|consen 255 AAQFVIG----SLSWWAPAFIYYSYELIGFDHN------------ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSG 318 (493)
T ss_pred HHHHhcc----ccchhhhhHHHHHHHHhCCccc------------cchhhhhHHHhhchhhheehHHHHHHHHHhccccc
Confidence 2222222 22233333332 2344443 333377778888889999999999995332
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh
Q 042372 231 --IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL 308 (402)
Q Consensus 231 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 308 (402)
+.--....+.+...+.+.+... .... .+.+..++++.+........ .+...-+..|+.|++.
T Consensus 319 ~~~~~q~~~~~g~~~s~~~L~~~~-~~~~--------------~s~~~~~il~~~g~~~~~~~-~a~n~~i~l~vV~p~~ 382 (493)
T KOG1330|consen 319 TLRASQLSAALGAPLSIPFLFLFP-AFTS--------------SSMIFGLILFLVGETISWFN-WATNNPIFLEVVPPSR 382 (493)
T ss_pred chhHHHHHHhhhhhHHHHHHHHHH-hhhh--------------HHHHHHHHHHHHHHHHHhcc-cccccceeeEecCccc
Confidence 1111111111111111111100 0000 22222222222222222222 2334445688999999
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHhHHHHhhhcC
Q 042372 309 RSTCHGISAAAGKAGAI-VGAFGVQYYTQKGD 339 (402)
Q Consensus 309 r~~~~~~~~~~~~~g~~-i~~~~~~~~~~~~~ 339 (402)
|.++.++...+..+.+- -+|.+.|.+.+...
T Consensus 383 Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 383 RTTAYALDTVFEHIFGDAASPYIVGILSDKLR 414 (493)
T ss_pred ccHHHHHHHHHHHHhccCCCcceehhHHHHhh
Confidence 99999999888776544 55568888888765
No 86
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.63 E-value=1.4e-14 Score=134.48 Aligned_cols=257 Identities=13% Similarity=0.010 Sum_probs=145.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHHHHHHhh-cCC
Q 042372 17 TRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMK-MPE 95 (402)
Q Consensus 17 ~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~~~~~~~-lpe 95 (402)
++++..+......++|.++++.+++.+. ..+||.+|++.++..++..+..++ .||
T Consensus 130 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~------------------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 130 NSNFEYGKARMFGCVGWALCASIAGILF------------------------SIDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred hcccccchhhhhcccHHHHHHHHHhhhh------------------------ccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445667777788899999999988764 348999999988777765544444 444
Q ss_pred CchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042372 96 TARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLT 175 (402)
Q Consensus 96 sp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (402)
+|+. ++ .+++ . +.++.+.+.++..+.+++ + .++......++....+.....+
T Consensus 186 ~~~~----~~-~~~~-----------~-----~~~~~~~~~~~~~~~l~~----~---~~~~~~l~~~~~~~~~~~~~~~ 237 (396)
T TIGR00882 186 APSS----AT-VANA-----------L-----GANASAFSLKLALELFRQ----R---KFWMFVLYVVGVACVYDVFDQQ 237 (396)
T ss_pred Cchh----hh-hhcc-----------c-----ccccCCCCHHHHHHHHcC----C---cHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 00 0000 0 000000001111111221 1 1222222222222233333334
Q ss_pred Hhhhhhhc----CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 042372 176 QKDIYPAT----GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARY 251 (402)
Q Consensus 176 ~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 251 (402)
.+.++++. +.+.... +.......+...++.+..+++.||+|||+.+.++..+.++...+....
T Consensus 238 ~~~y~~~~~~~~~~~~~~~------------g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~- 304 (396)
T TIGR00882 238 FANFFTSFFATPQQGTRVF------------GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA- 304 (396)
T ss_pred HHHHHHHhccccccchHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-
Confidence 45555442 2222222 224555666677777889999999999999888877666655443321
Q ss_pred ccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHH-HHHHHHHHHHHHHHh
Q 042372 252 DSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGI-SAAAGKAGAIVGAFG 330 (402)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~g~~i~~~~ 330 (402)
.+.+.... .....+............+..+..|++.++++.+. .+....+|+++++.+
T Consensus 305 --------------------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l 363 (396)
T TIGR00882 305 --------------------TTALEVVI-LKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL 363 (396)
T ss_pred --------------------CChHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 12222222 22222221111112233455677788888887766 567889999999999
Q ss_pred HHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372 331 VQYYTQKGDKQIKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (402)
.+++.+.. |++.+|.+.+++.++..++..
T Consensus 364 ~G~l~~~~--G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 364 AGNMYDSI--GFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHhc--ccHHHHHHHHHHHHHHHHHHH
Confidence 99999987 899999998888777766544
No 87
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.1e-13 Score=119.63 Aligned_cols=263 Identities=15% Similarity=0.131 Sum_probs=181.5
Q ss_pred hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
.+..+-+.+|+ +-+..++++....++|.++++.++-.+.. ...+||....+-+++++
T Consensus 120 LPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~----------------------~~~gW~~aL~~WAl~al 176 (395)
T COG2807 120 LPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQ----------------------HSGGWRGALGFWALLAL 176 (395)
T ss_pred hhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHH----------------------hhccHHHHHHHHHHHHH
Confidence 45667777754 67999999999999999999999988862 22579999999999988
Q ss_pred HHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372 85 LTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL 164 (402)
Q Consensus 85 ~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (402)
+.++.+ +|...|. +.... ..+..+..+++++ +..+.+.+.+..
T Consensus 177 lAl~~W--lPq~~r~-----~~~~~-----------------------~~~~~~~~~vw~~-------~~aW~vtLfmGl 219 (395)
T COG2807 177 LALLIW--LPQALRE-----QAASI-----------------------ATKLVSVRKVWRS-------PLAWQVTLFMGL 219 (395)
T ss_pred HHHHHH--hhhcccc-----ccccc-----------------------ccccccccccccC-------chhHHHHHHHHh
Confidence 877764 3432211 00000 0001111122222 256667777777
Q ss_pred HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-chhHHHHHHHHHHHHH
Q 042372 165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-GRFIIQLGGFLLMSIC 243 (402)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~ 243 (402)
+...+|....|+|.++.+.|+|..+.+. ...+..+.+++.++....+.+|. .+|+..+.....+.++
T Consensus 220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~------------llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 220 QSLLYYIVIGWLPAILIDRGLSAAEAGS------------LLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHhhh------------HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 8889999999999999999999997665 78888888999999999999975 4566666555555555
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-hhhhhhhHHHHHHHHHH
Q 042372 244 MAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-ARLRSTCHGISAAAGKA 322 (402)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~ 322 (402)
.+.+.+... ...+.++ +..+.+..+.++...+.+..... ++..+.-.++.+.++++
T Consensus 288 ~~G~~~~P~-------------------~~~~lw~----~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYl 344 (395)
T COG2807 288 LVGLLLAPG-------------------QLPILWA----LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYL 344 (395)
T ss_pred HHHHHHhhh-------------------hHHHHHH----HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHH
Confidence 555443211 2222221 22233334444555555555544 45567778999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
-..+||.++|++.|..+ +|..++..++...++..+..+..
T Consensus 345 lAa~GP~l~G~lhDa~g-sw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 345 LAAFGPWLFGFLHDATG-SWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred HHhhhhhhHhHHHHhcC-ChHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999988 89888888877777766665543
No 88
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.61 E-value=2.5e-13 Score=126.11 Aligned_cols=242 Identities=14% Similarity=0.071 Sum_probs=137.3
Q ss_pred hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
...+..|.+++++|+++.+....+..+|..+++.+++.+. +..+||+.|++.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-----------------------~~~g~~~~f~~~~~~~~ 173 (394)
T PRK11652 117 ARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT-----------------------TLFGWRACYLFLLLLGA 173 (394)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccChHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999886 56789999999776655
Q ss_pred H-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 85 L-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 85 ~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
+ .++..+++||+++. ++++++..+. .+..++++.. +..+... +
T Consensus 174 ~~~~~~~~~~~~~~~~----~~~~~~~~~~-------------------------~~~~~~~~~~----~~~~~~~---~ 217 (394)
T PRK11652 174 GVTFSMARWMPETRPA----DARRTRVLAS-------------------------YRTLLSNRRF----NCYLLML---I 217 (394)
T ss_pred HHHHHHHHhCCccCcc----ccchhHHHHH-------------------------HHHHHcChHH----HHHHHHH---H
Confidence 4 34445667887532 1111110000 0011111111 1111111 1
Q ss_pred HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372 164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI 242 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~ 242 (402)
...........+.+.++++ +|++....+. ......++.+++.++.+++.||.+++...... ...+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~--~~~~ 283 (394)
T PRK11652 218 GTLAGIAVFEACSGVLMGAVLGLSSMTVSI------------LFILPIPAAFFGAWFAGRPNKRFSTLMWQSVI--CCLL 283 (394)
T ss_pred HHHHHHHHHHHhChHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 1112222333344556665 7777664333 45556677777777888888888743332212 1122
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA 322 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 322 (402)
..+.+..... ... ...+... ......+.+.....+....+..|.+| +.++++.++.+....+
T Consensus 284 ~~~~~~~~~~-~~~---------------~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~l 345 (394)
T PRK11652 284 AGLLMWIPGW-FGV---------------MNVWTLL-VPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNI 345 (394)
T ss_pred HHHHHHHHHH-hcc---------------ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHH
Confidence 2111111110 000 1111222 22222222222344556666778887 5789999999999999
Q ss_pred HHHHHHHhHHHHhhh
Q 042372 323 GAIVGAFGVQYYTQK 337 (402)
Q Consensus 323 g~~i~~~~~~~~~~~ 337 (402)
|+.+++.+.+.+...
T Consensus 346 g~~~~~~~~~~~~~~ 360 (394)
T PRK11652 346 GSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHccCC
Confidence 999999888877543
No 89
>PRK10133 L-fucose transporter; Provisional
Probab=99.59 E-value=3.6e-13 Score=126.27 Aligned_cols=281 Identities=11% Similarity=-0.024 Sum_probs=153.6
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccC----CCC--CcchhHHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQ----PQG--DYLWRIVL 76 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~Wr~~f 76 (402)
+....++.|+.|+++|.+.+++.+..+.+|..+++.++..+..........+. ..+...+ ... ..+||++|
T Consensus 136 ~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~---~~~l~~~~~~~w~~~~~~~w~~~f 212 (438)
T PRK10133 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV---LDKMTPEQLSAYKHSLVLSVQTPY 212 (438)
T ss_pred hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhh---hhccChhhHHHHHHHHHHHHHHHH
Confidence 45567788888888787789999999999999999998766411000000000 0000000 000 03577777
Q ss_pred HH-hhHHHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHH
Q 042372 77 MF-GAVPAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLH 154 (402)
Q Consensus 77 ~~-~~i~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (402)
+. .++..++.++ ....+||.|.. +++ ++.. .+..+..++.++++ .
T Consensus 213 ~~~~~v~~~~~~~~~~~~~p~~~~~----~~~-~~~~---------------------~~~~~~~~~ll~~~-------~ 259 (438)
T PRK10133 213 MIIVAIVLLVALLIMLTKFPALQSD----NHS-DAKQ---------------------GSFSASLSRLARIR-------H 259 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcc----ccc-cccc---------------------cchhhhHHHHHhCc-------h
Confidence 64 3333333322 23335543210 000 0000 00000111122221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh-hh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIY-PA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII 232 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 232 (402)
+....+..++.....++...|.+.++ ++ .|.++...+. ......++.++|+++++++.||+|||++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~------------~~~~~~~~~~vG~~~~g~l~~r~g~~~~ 327 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAAN------------YLTGTMVCFFIGRFTGTWLISRFAPHKV 327 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 11122222333334444445666563 43 6888876554 7788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372 233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
+..+.++.++.+.+.... ..... .......+++.....|..++...+.+|++ .+.+
T Consensus 328 l~~~~~~~~~~~~~~~~~---------------------~~~~~--~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~a 383 (438)
T PRK10133 328 LAAYALIAMALCLISAFA---------------------GGHVG--LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYG 383 (438)
T ss_pred HHHHHHHHHHHHHHHHHc---------------------CChHH--HHHHHHHHHHHHHHHHHHHHHHHcccchh-hccc
Confidence 888766655444433221 11111 11222233344555677777888888764 5677
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCC-chhhhHHHHHHHHHHHH
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQ-IKQSIIALAVVNFLGFL 358 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 358 (402)
.++.. ...+|+.++|.+.+.+.+.. + .+..|++..+..+....
T Consensus 384 s~l~~-~~~~g~~~~~~i~G~l~~~~--g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 384 SSFIV-MTIIGGGIVTPVMGFVSDAA--GNIPTAELIPALCFAVIFI 427 (438)
T ss_pred hhHHh-HHhccchHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHH
Confidence 77775 45578888999999988876 4 56777655444443333
No 90
>TIGR00895 2A0115 benzoate transport.
Probab=99.59 E-value=2.9e-14 Score=132.43 Aligned_cols=179 Identities=18% Similarity=0.183 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.........+...........+.|.+.+++|.+..+.+. ......++.+++.++.|+++||+|||+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 85 (398)
T TIGR00895 18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGF------------LFSAGLIGMAFGALFFGPLADRIGRKRVL 85 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHH------------HHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence 344444445555555566667788888888888776544 66677778888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
..+.++..++.++.... .+. ....+..+..+++.....+...++..|.+|++.|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 143 (398)
T TIGR00895 86 LWSILLFSVFTLLCALA---------------------TNV-TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAV 143 (398)
T ss_pred HHHHHHHHHHHHHHHHc---------------------cch-HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhH
Confidence 98887777766655542 122 22233333334434445567778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNG 368 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~ 368 (402)
++......+|..+++.+.+.+.+.. +|+..+++.+++.++..++.+ ++||+..
T Consensus 144 ~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 144 GLMFCGYPIGAAVGGFLAGWLIPVF--GWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhhcc--cceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 9999999999999999999988876 899888887655555544444 5577643
No 91
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.59 E-value=3.1e-13 Score=125.55 Aligned_cols=279 Identities=10% Similarity=-0.050 Sum_probs=152.1
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccc-cccc--ccccCCCCCcchhHHHHHh
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAF-NRNH--VLSAQPQGDYLWRIVLMFG 79 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~Wr~~f~~~ 79 (402)
+....++.+..|+++|++.+++.+...++|..+++.++..+.....+....... ..++ +......+..+||++|++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~ 192 (410)
T TIGR00885 113 TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMII 192 (410)
T ss_pred hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999998876321000000000 0000 0000000235799999887
Q ss_pred hHHHHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHH
Q 042372 80 AVPAALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLG 157 (402)
Q Consensus 80 ~i~~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (402)
+++.++..++..+ +||.++ +++++. + ......+.++++ .+..
T Consensus 193 a~~~~~~~~~~~~~~~p~~~~------~~~~~~--------------------~---~~~~~~~~~~~~-------~~~~ 236 (410)
T TIGR00885 193 GAVVLAVALLIMLTKMPALNH------SDAKQI--------------------S---FSASLSRLARIR-------HYRE 236 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCCc------cccccc--------------------c---chhhHHHHHhCh-------hHHH
Confidence 7766654433322 443211 000000 0 000000111111 1222
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHH
Q 042372 158 TTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGF 237 (402)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~ 237 (402)
.....++..........+++.+.++.+..... + .+.........+..+|.++++++.||+++|+.+.+..
T Consensus 237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~-~---------~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~ 306 (410)
T TIGR00885 237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTA-G---------FAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYA 306 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCH-H---------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 22223333333445556677777654322211 1 1111333444566788889999999999999888877
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH
Q 042372 238 LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA 317 (402)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 317 (402)
.+..+++++.... ..... ...+.+. +++....+|..++...+..+++.+..+.++..
T Consensus 307 ~~~~~~~ll~~~~---------------------~~~~~-~~~l~~~-glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~ 363 (410)
T TIGR00885 307 IIGMALCLGSIFA---------------------GGHVG-LYCLTLC-SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM 363 (410)
T ss_pred HHHHHHHHHHHHc---------------------CChHH-HHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 6666665555442 11112 2222222 23334445788888889998777655555555
Q ss_pred HHHHHHHHHHHHhHHHHhhhcC----CCchhhhHHHHHH
Q 042372 318 AAGKAGAIVGAFGVQYYTQKGD----KQIKQSIIALAVV 352 (402)
Q Consensus 318 ~~~~~g~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~ 352 (402)
.. +|+.+.|.+.|.+.|..+ .+.+..|++..++
T Consensus 364 ~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 364 AI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred HH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 44 899999999999999531 0355666654333
No 92
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.59 E-value=6.7e-13 Score=121.05 Aligned_cols=254 Identities=13% Similarity=0.051 Sum_probs=160.5
Q ss_pred HHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372 7 VIMSEYAN-KRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL 85 (402)
Q Consensus 7 ~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~ 85 (402)
++..|+.+ ++||.+..+.-+.+..+|.++...+...+...++++ ....||+..-.+.++++++
T Consensus 135 al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~----------------~~~~g~~~~~~~~~vi~~i 198 (467)
T COG2211 135 ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG----------------DKALGYQGTALVLGVIGVI 198 (467)
T ss_pred hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------------cchhhHHHHHHHHHHHHHH
Confidence 44566664 789999999999999999988888888777665541 2377999999888888777
Q ss_pred HHHHHhh-cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372 86 TYYWRMK-MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL 164 (402)
Q Consensus 86 ~~~~~~~-lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (402)
.++.+++ ++|.+.. .++.+. ..+....+.+..-..++ .++......++
T Consensus 199 ~~l~~~~~v~ER~~~--~~~~~~--------------------------~~~~~~~~~~~~~~~Nr---p~~~~l~~~l~ 247 (467)
T COG2211 199 LLLFCFFNVKERVVE--TQPTKT--------------------------GVKLKLKDSFLLIFKNR---PLLLLLLMNLL 247 (467)
T ss_pred HHHHHHHHhhcccCc--cccCcc--------------------------cccccHHHHHHHHHccc---hHHHHHHHHHH
Confidence 6665544 6665421 000000 00111111111111122 22223333333
Q ss_pred HHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHH
Q 042372 165 LDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSIC 243 (402)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~ 243 (402)
.............+|.+. +|.++..... .......+.+++.++..++++|+|+|+++.++.++.+++
T Consensus 248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~~------------~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVLGDPELFAYL------------LLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG 315 (467)
T ss_pred HHHHHHHHhhhhheeEEEEcCChHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence 333444444444555543 4554443222 444555566666788999999999999999998888877
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-------hhhhhhhHHHH
Q 042372 244 MAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-------ARLRSTCHGIS 316 (402)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~ 316 (402)
.+++.+.. .+...++++..+....+.....+..|++.+|... .+.-|...|..
T Consensus 316 ~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~ 375 (467)
T COG2211 316 YLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM 375 (467)
T ss_pred HHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence 77766642 1222344444445455566667788999888753 34457778999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcC
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKGD 339 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~~ 339 (402)
.++..+|.+++..+.++.....+
T Consensus 376 tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 376 TFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999887653
No 93
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.59 E-value=4.2e-13 Score=124.87 Aligned_cols=330 Identities=12% Similarity=-0.021 Sum_probs=193.7
Q ss_pred hhHHhhhhccccch--hHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 5 SAVIMSEYANKRTR--GAFIAAVFAMQGMGILFAGVISLIFS--GIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 5 ~~~~i~e~~~~~~r--g~~~~~~~~~~~lG~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
..++++|.+|+++| +.+.++.+.+.++|.++++.+++... ..++.. ..+.+ ...-.+.|..|++.+
T Consensus 135 ~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~F~i~a 204 (477)
T TIGR01301 135 CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFT-KTEAC---------GVSCANLKSCFLIDI 204 (477)
T ss_pred HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc-ccccc---------ccccchHHHHHHHHH
Confidence 45789999998865 67899999999999999999998752 111110 00000 001236799999988
Q ss_pred HHHHHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372 81 VPAALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT 159 (402)
Q Consensus 81 i~~~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (402)
+..++.. +..++++|.|.. . .++.+++ + . ++.++ .+.+...++.++ ..++.++.+..++
T Consensus 205 ~~l~i~~l~t~~~v~E~~~~--~-~~~~~~~--~--------~----~~~~~-~~~~~~~~~i~~--~~~~mP~~m~~l~ 264 (477)
T TIGR01301 205 ILLAILTYIALSAVKENPLI--G-SDDFINS--E--------A----APPSK-HGEEAFFGELFG--AFKYLPRPVWILL 264 (477)
T ss_pred HHHHHHHHHHeeeeeccCCC--c-cccchhh--h--------c----ccccc-cchhhhHHHHHH--HHHHCCHHHHHHH
Confidence 8777654 455668997632 1 1110000 0 0 00000 000111112222 2233344566666
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhh--cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch-hHHHHHH
Q 042372 160 STWFLLDIAFYTINLTQKDIYPA--TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR-FIIQLGG 236 (402)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~ 236 (402)
...++.-++++.+..|...+..+ ++-++... ..|+.....+........+...+.+++-.++.+|+|+ |....++
T Consensus 265 ~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~--~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s 342 (477)
T TIGR01301 265 LVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG--AKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIV 342 (477)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 66666666777777777777654 33222211 2355554555556666666666777788899999984 6777888
Q ss_pred HHHHHHHHHHHHHhhccccCC-CCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh--hhhhhH
Q 042372 237 FLLMSICMAILGARYDSLRGK-KCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR--LRSTCH 313 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~ 313 (402)
.++.+++++...+......+. ..+.++... ..+.......++.....+.......+++++++++..|++ ..|..+
T Consensus 343 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~m 420 (477)
T TIGR01301 343 NIILAICLAATVLVTYVAKNSRYYDGDGESL--PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSM 420 (477)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccc--CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchh
Confidence 777777776665443211000 000000000 000111122333333333334455568888999999854 448899
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCC
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNG 368 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~ 368 (402)
|+.|.+..+.+++..+..+.+.+..+.+....+.+.++..+++.+..+++ |+++.
T Consensus 421 gilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 421 GVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999988888777665455677778888888888887755 87653
No 94
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.58 E-value=6.1e-14 Score=130.71 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH
Q 042372 152 GLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI 231 (402)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~ 231 (402)
++.++.+++.+++............|.+.+++|++..+.+. ......++..++.+..|++.||+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~G~r~ 74 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGL------------AATLFYAAYVICGIPSNIMLAIIGARR 74 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHH------------HHHHHHHHHHHHHhhHHHHHHHhChHH
Confidence 34555666666666666666777778777889999887665 666777778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372 232 IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST 311 (402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 311 (402)
.+..+.++.+++.++..+. ++.. .+.+..++.+.+..+..+....++.|.+|++.|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~---------------------~~~~-~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~ 132 (412)
T TIGR02332 75 WIAGIMVLWGIASTATMFA---------------------TGPE-SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRAR 132 (412)
T ss_pred HHHHHHHHHHHHHHHHHHh---------------------cCHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHH
Confidence 9999988888777776653 2222 22333333344344445666677899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhc----CCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372 312 CHGISAAAGKAGAIVGAFGVQYYTQKG----DKQIKQSIIALAVVNFLGFLCSF-MVPETNG 368 (402)
Q Consensus 312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~ 368 (402)
+.++.+....+|..+++.+.+++.+.. ..+|+..|++.++..++..++.+ ++||+++
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 999999999999999999988876421 11899999998877766555444 5577754
No 95
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.58 E-value=2.2e-13 Score=129.34 Aligned_cols=258 Identities=11% Similarity=0.008 Sum_probs=140.3
Q ss_pred hHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 6 AVIMSEYA-NKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 6 ~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
.++..|.. ++++|.+..++...+..+|..+.+.+...+...++. .....+|+....+.++..+
T Consensus 128 ~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~----------------~~~~~g~~~~~~i~~~~~~ 191 (473)
T PRK10429 128 WSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG----------------GDRGFGFQMFTLVLIAFFI 191 (473)
T ss_pred HhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CchhhhHHHHHHHHHHHHH
Confidence 35778988 589999999987777787766666555444322221 1133478888877776666
Q ss_pred HHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 85 LTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 85 ~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
+..+. .+..+|.+.. +..+.+ ++++.+.++.++... ++ +.++......+
T Consensus 192 ~~~~~~~~~~~e~~~~----~~~~~~-----------------------~~~~~~~~~~~~~~~-~n--~~~~~ll~~~~ 241 (473)
T PRK10429 192 VSTIITLRNVHEVYSS----DNQVSA-----------------------EGSHLTLKDIVALIY-KN--DQLSCLLGMAL 241 (473)
T ss_pred HHHHHHHcCceecCCc----cccccc-----------------------cccCCCHHHHHHHHh-cC--HHHHHHHHHHH
Confidence 54433 3346764321 000000 000112222222111 11 22333333333
Q ss_pred HHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHH
Q 042372 164 LLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSIC 243 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~ 243 (402)
......+....+.+++.+....+.... ........++.+++.++.++++||+|+|+.+.++..+..++
T Consensus 242 ~~~~~~~~~~~~~~y~~~y~~~~~~~~------------~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~ 309 (473)
T PRK10429 242 AYNIASNIINGFAIYYFTYVIGDADLF------------PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLS 309 (473)
T ss_pred HHHHHHHHHhhheeeEEEEECCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 333444444455555555432222221 11444455667778888999999999999988877655544
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-------hhhhhhhHHHH
Q 042372 244 MAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-------ARLRSTCHGIS 316 (402)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~ 316 (402)
.+.+..... .. . .+.+.. ++..+..+.+........+++.+|..+ .+..|...|..
T Consensus 310 ~~~~~~~~~-~~-~--------------~~~~~~-~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~ 372 (473)
T PRK10429 310 CGVLLLMGL-AA-P--------------HNALLI-VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQ 372 (473)
T ss_pred HHHHHHHhc-cC-c--------------hhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHH
Confidence 444322211 01 1 122222 222222222223333455667788754 33456678999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhc
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
..+..++..+++.+.+.+.+..
T Consensus 373 ~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 373 TMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999887755
No 96
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.57 E-value=1.3e-13 Score=129.44 Aligned_cols=177 Identities=11% Similarity=0.068 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.++..++.++......+....+.|.+.+++|++..+.+. ......++..++.++.|++.||+|||+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~g~r~~~ 91 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGL------------LATLFYITYGVSKFVSGIVSDRSNARYFM 91 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHhhhhHHHhhcCCchhH
Confidence 334444445554444556677789999999999886555 66777888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
.++.++.+++.++.... .+.+.+.+.. +..+.+.....+....++.|.+|++.|+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~-~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~ 149 (434)
T PRK11663 92 GIGLIATGIINILFGFS---------------------SSLWAFALLW-VLNAFFQGWGWPVCAKLLTAWYSRTERGGWW 149 (434)
T ss_pred HHHHHHHHHHHHHHHHH---------------------hHHHHHHHHH-HHHHHHHHccchHHHHHHHHhCCHHHHHHHH
Confidence 99988888777766553 2222222222 2222222333455667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH-hhcccC
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS-FMVPET 366 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~et 366 (402)
++.+....+|..+++.+.+.+.+.. +|+..|.+.+++.++..+.. +++||+
T Consensus 150 ~~~~~~~~~g~~~~~~~~~~l~~~~--gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 150 AIWNTAHNVGGALIPLVVGAIALHY--GWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999988876 89999998877666544433 345654
No 97
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4.3e-14 Score=124.74 Aligned_cols=181 Identities=10% Similarity=0.075 Sum_probs=140.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc
Q 042372 147 FVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR 226 (402)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr 226 (402)
..|.+++.++.+++.+....+.--.+..-.|.+.++.+++..+.+. +.+...+..-++-++.|.++||
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~------------i~s~f~i~YG~sKf~~G~~sDr 90 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGI------------LGSAFSITYGVSKFVMGVLSDR 90 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHhhhhccc
Confidence 3334444566666666666666666777889999999999998766 6666667777777889999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch
Q 042372 227 IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA 306 (402)
Q Consensus 227 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 306 (402)
.+.|..+-.++++++++.+++++. + +.....++..+.+.+...-.|.+...++..+|+
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs---------------------~-s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr 148 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFS---------------------P-SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR 148 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhh---------------------h-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence 999999999999999999998885 2 233333333344444444445677788999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhH--HHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 307 RLRSTCHGISAAAGKAGAIVGAFGV--QYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 307 ~~r~~~~~~~~~~~~~g~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+.||+..++-++..++|+.+.|.+. +....+. +|+..|++-++++++..++.+++
T Consensus 149 ~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~--~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 149 KERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG--GWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred cccCceEEEehhhhhcccchHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888 7777776 89999999999988877776654
No 98
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.57 E-value=6.3e-14 Score=130.55 Aligned_cols=183 Identities=17% Similarity=0.162 Sum_probs=134.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh
Q 042372 151 HGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF 230 (402)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr 230 (402)
+++.+...++.++......+......|.+.+++|.++.+.+. ......++..++.++.|.++||+|||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~Dr~g~r 77 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAAS------------LISAALISRWFGALMFGLWGDRYGRR 77 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHH------------HHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 344566666677777777777777888888889998886555 66777888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372 231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS 310 (402)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 310 (402)
+.++.+.++.+++.++..+. .+. ....+..+..+.+.....+...+++.|.+|++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~ 135 (405)
T TIGR00891 78 LPMVTSIVLFSAGTLACGFA---------------------PGY-ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN 135 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------------------ccH-HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhh
Confidence 99998887777776665543 222 22233333333334444556667889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
.+.++.+....+|.++++.+.+.+.+..+.+|+..|++.++..++..+....+||++
T Consensus 136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999998888776522489888876666555555444567754
No 99
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.57 E-value=8e-14 Score=136.34 Aligned_cols=181 Identities=14% Similarity=0.056 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.++.+.+..+....-...+...+|.+..++|.+..+.+. +.+...++.++|.+++|+++||+|||+.+
T Consensus 168 l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~------------l~s~~~lG~iiG~li~G~LsDR~GRR~~l 235 (742)
T TIGR01299 168 LFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGM------------LGLIVYLGMMVGAFFWGGLADKLGRKQCL 235 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 333344444433333444556678777788888765444 66677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
+++.++.+++.++..+. .+. ..+++..++.+++..+..+...+++.|.+|++.|+...
T Consensus 236 ii~lil~~i~~ll~afa---------------------~s~-~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~ 293 (742)
T TIGR01299 236 LICLSVNGFFAFFSSFV---------------------QGY-GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHL 293 (742)
T ss_pred HHHHHHHHHHHHHHHHH---------------------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 99887777776665543 222 23333333444444445577888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcC-----------CCchhhhHHHHHHHHHHHHHHhhcccCCC
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGD-----------KQIKQSIIALAVVNFLGFLCSFMVPETNG 368 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~et~~ 368 (402)
++......+|.++++.+...+....+ .+|+..+++.++..++.+++.+++||+.+
T Consensus 294 g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPr 359 (742)
T TIGR01299 294 SWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPR 359 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999998877655543221 16888888877777777666667798743
No 100
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.54 E-value=2.1e-12 Score=122.11 Aligned_cols=311 Identities=11% Similarity=0.097 Sum_probs=163.5
Q ss_pred hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372 6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL 85 (402)
Q Consensus 6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~ 85 (402)
...++|..|.|+|+...++...........++.++..+. ...+|||.|++.++...+
T Consensus 152 ~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~-----------------------~~~~WRw~~~~~~i~~~i 208 (599)
T PF06609_consen 152 ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA-----------------------AHSGWRWIFYIFIIWSGI 208 (599)
T ss_pred HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc-----------------------cCCCcchHHHHHHHHHHH
Confidence 345899999999988777665554444445566655543 456899999998877665
Q ss_pred HHHHHhhcCCCchhHhhhcC--CHHHHHHHHHHhh-------------ccc----cccccCCCCCCC-------------
Q 042372 86 TYYWRMKMPETARYTALVEG--NQKKAAVDMAKVL-------------DTD----INVATSAYPAPV------------- 133 (402)
Q Consensus 86 ~~~~~~~lpesp~~l~~~~~--~~~~~~~~~~~~~-------------~~~----~~~~~~~~~~~~------------- 133 (402)
.+++.++....|++-..+.+ .+.+..+++...- +.+ ...+.+..+-..
T Consensus 209 ~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~ 288 (599)
T PF06609_consen 209 ALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFV 288 (599)
T ss_pred HHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHH
Confidence 44433332222333111111 1222222222110 000 001111100000
Q ss_pred --CCCcc-cccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372 134 --SPEAS-TYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVA 209 (402)
Q Consensus 134 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (402)
+.... ...++-.+.+++ .|.+....+..+.....+|....+.|..... ++.+..... ..+......
T Consensus 289 ~wE~~~~~~~Pl~P~~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~---------~~~~~s~~~ 358 (599)
T PF06609_consen 289 VWEWFGAPKDPLFPHRLFKD-RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISIT---------EIGWISSPV 358 (599)
T ss_pred HhhhhccCCCCcCCHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccc---------eeehhhhhH
Confidence 00000 111222233332 2345555566666666778877777776554 333332100 111245556
Q ss_pred Hhhhcccchhhhhhccccch-hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHh
Q 042372 210 LFATVPGYWFTVFLIDRIGR-FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFA 288 (402)
Q Consensus 210 ~i~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (402)
.++...|.++.|.+..+++| |+.++++.+.+.+++..++... .++ + +..+.+.++..+..
T Consensus 359 ~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~---~~n----~---------~~~i~~~~l~g~gi--- 419 (599)
T PF06609_consen 359 GFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR---PDN----K---------NAAIAFLVLAGFGI--- 419 (599)
T ss_pred HHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc---CCC----c---------chHHHHHHHHHHhH---
Confidence 66677777788888888877 4555566655554444433321 111 0 11222222222211
Q ss_pred hcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh-------------------------------
Q 042372 289 NFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK------------------------------- 337 (402)
Q Consensus 289 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~------------------------------- 337 (402)
.+......+.+.-..|++.-+++.|+..++..+|+.++..++..+...
T Consensus 420 -G~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~ 498 (599)
T PF06609_consen 420 -GGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEAL 498 (599)
T ss_pred -HHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 112223344455678889999999999999999999888665433210
Q ss_pred ----------c-------------------CCCchhhhHHHHHHHHHHHHHHhhcccCCCC
Q 042372 338 ----------G-------------------DKQIKQSIIALAVVNFLGFLCSFMVPETNGL 369 (402)
Q Consensus 338 ----------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~ 369 (402)
. ..+++.+|+....+..++.+..+++++.++.
T Consensus 499 ~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~ 559 (599)
T PF06609_consen 499 AAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKY 559 (599)
T ss_pred hccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHh
Confidence 0 0056788888888888888888888765543
No 101
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.54 E-value=9e-13 Score=128.40 Aligned_cols=217 Identities=12% Similarity=0.117 Sum_probs=123.3
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--cCcccccccccccCCCCCc--chhHHHH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVY--NAPAFNRNHVLSAQPQGDY--LWRIVLM 77 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~Wr~~f~ 77 (402)
++.+.+|+.|++|+++|+++++++..+..+|.++|+++++.+.+.+.+-. +.+..+.++ ....| +||..|+
T Consensus 190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~-----~dprWiGaWwl~Fl 264 (633)
T TIGR00805 190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTP-----TDPRWIGAWWIGFL 264 (633)
T ss_pred hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCC-----CCccHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999875432100 000000000 00111 3888898
Q ss_pred HhhHHHHHHHHHHhhcCCC-chhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHH
Q 042372 78 FGAVPAALTYYWRMKMPET-ARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLL 156 (402)
Q Consensus 78 ~~~i~~~~~~~~~~~lpes-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
+.++++++..+..+++|+. |+. . ++.+.+..+. .. .+..+ .+.........+...+.++ ..+++ +.++
T Consensus 265 i~g~l~~l~~v~l~~~p~~lp~~--~-~~~~~~~~~~-~~---~~~~~-~~~~~~~~~~~~~~~~~~~-~Ll~n--~~f~ 333 (633)
T TIGR00805 265 ICGGVALLTSIPFFFFPKALPKE--G-KRVNVDVHET-EK---LEKSE-DKSRKKNSDITKDFPKIIK-RLLCN--PIYM 333 (633)
T ss_pred HHHHHHHHHHHHHHhCccccCCc--c-cccchhhhhh-hc---ccccc-cccchhhhhhHHHHHHHHH-HHHcC--cHHH
Confidence 8888777765555666654 321 0 0000000000 00 00000 0000000000000111111 11222 3556
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHh-hhcccchhhhhhccccc--hhHH
Q 042372 157 GTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALF-ATVPGYWFTVFLIDRIG--RFII 232 (402)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~g~~~~g~l~dr~g--rr~~ 232 (402)
...+..+.....+++...|+|.++++ +|+++..++. +.....+ +.++|.+++|+++||++ .|+.
T Consensus 334 ~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~------------l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~ 401 (633)
T TIGR00805 334 LVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANF------------LIGVVNLPAAGLGYLIGGFIMKKFKLNVKKA 401 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH------------HhhhhhhhHHHHHHhhhhheeeeecccHHHH
Confidence 66666666777788888999999986 8888876544 4433333 55778889999999998 4566
Q ss_pred HHHHHHHHHHHHHH
Q 042372 233 QLGGFLLMSICMAI 246 (402)
Q Consensus 233 ~~~~~~~~~~~~~~ 246 (402)
+..+.+...+..+.
T Consensus 402 ~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 402 AYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555554433
No 102
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.54 E-value=2.9e-13 Score=125.44 Aligned_cols=178 Identities=13% Similarity=0.062 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII 232 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 232 (402)
+....+.+..+......+......|.+.+++|+++.+.+. ......++..++.++.|.++||+|||+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~Dr~grr~~ 87 (394)
T PRK10213 20 SAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQ------------SVTVTAFVAMFASLFITQTIQATDRRYV 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhcccCcHHH
Confidence 3344444444444444455555678888889999886554 5566677778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372 233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
++.+.++.+++.+..... .+.+.+. +..+..+.+.....+....++.|.+|++.|+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~---------------------~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a 145 (394)
T PRK10213 88 VILFAVLLTLSCLLVSFA---------------------NSFSLLL-IGRACLGLALGGFWAMSASLTMRLVPPRTVPKA 145 (394)
T ss_pred HHHHHHHHHHHHHHHHHH---------------------ChHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHH
Confidence 999988888777665553 2222333 333333333333445666778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccC
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPET 366 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et 366 (402)
.++......++..++|.+.+.+.+.. +|+..|++.+++.++..+... .+||+
T Consensus 146 ~~~~~~~~~~g~~ig~~l~~~l~~~~--gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 146 LSVIFGAVSIALVIAAPLGSFLGELI--GWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999998877 899999988776666554443 34664
No 103
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.53 E-value=2.1e-13 Score=126.21 Aligned_cols=173 Identities=15% Similarity=0.089 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
..+.............|.+.+++|.++.+.+. ......++..++.++.|+++||+|||+.+..+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~ 80 (385)
T TIGR00710 13 LSILGPLGIDMYLPAFPEIAADLSTPASIVQM------------TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIF 80 (385)
T ss_pred HHHHHHHHHHHhcccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence 33333444444555567788889998886555 677777888888999999999999999999988877
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.++.+..... ++.+. ..+..+..+.+.....+....+..|.+|++.|+++.++.+...
T Consensus 81 ~~~~~~~~~~---------------------~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (385)
T TIGR00710 81 ALSSLGLALS---------------------NNIET-LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVL 138 (385)
T ss_pred HHHHHHHHHH---------------------ccHHH-HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 7777665553 22222 2222333333333334556677899999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCCC
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNGL 369 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~~ 369 (402)
.+|..+++.+.+.+.+.. +|+..+++.+++.++..+..++ .||++.+
T Consensus 139 ~~g~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 139 ALAPAVAPLLGGYILVWL--SWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999888876 8999998888777776665554 4765443
No 104
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.52 E-value=1.5e-13 Score=127.45 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=123.0
Q ss_pred HHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042372 169 FYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILG 248 (402)
Q Consensus 169 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 248 (402)
.+......|.+.+++|.++.+.+. ......++..++.++.|+++||+|||+.+..+.++.+++..+..
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 77 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGY------------VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHH------------HHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence 344555567777788988876555 77778888888999999999999999999988887777776665
Q ss_pred HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372 249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA 328 (402)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~ 328 (402)
.. .+. ....+.....+.+.....+....++.|.+|++.|+.+.++.+....+|..+++
T Consensus 78 ~~---------------------~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 135 (399)
T TIGR00893 78 FA---------------------GAY-VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGG 135 (399)
T ss_pred HH---------------------cCH-HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHH
Confidence 53 222 22333333333334445566777889999999999999999999999999999
Q ss_pred HhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372 329 FGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNG 368 (402)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~ 368 (402)
.+.+.+.+.. +|+..|.+.+++.++..+..++ .||++.
T Consensus 136 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 136 PLVGWILIHF--SWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHhC--CchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 9999888776 8999999888877766665554 365543
No 105
>PRK03545 putative arabinose transporter; Provisional
Probab=99.52 E-value=3.5e-13 Score=124.98 Aligned_cols=175 Identities=13% Similarity=0.094 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHH
Q 042372 156 LGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLG 235 (402)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~ 235 (402)
+.+.+..+......+......|.+.+++|.++.+.+. ......++..++.+..|.+.||+|||+++..
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 79 (390)
T PRK03545 12 VTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGL------------MLTIYAWVVALMSLPLMLLTSNVERRKLLIG 79 (390)
T ss_pred HHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 3333333333333444445578888889999887555 5556666677777788999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHH
Q 042372 236 GFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGI 315 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 315 (402)
+..+.+++.+..... ++.+.+ .+..+..+.+.....+....+..|.+|++.|+.+.|+
T Consensus 80 ~~~~~~~~~~~~~~~---------------------~~~~~l-~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~ 137 (390)
T PRK03545 80 LFVLFIASHVLSALA---------------------WNFTVL-LISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSL 137 (390)
T ss_pred HHHHHHHHHHHHHHh---------------------ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHH
Confidence 988877777666553 222222 2222333332333344556677999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccC
Q 042372 316 SAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPET 366 (402)
Q Consensus 316 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et 366 (402)
......+|..++|.+.+.+.+.. +|+..|++.+++.++..+..+. +||.
T Consensus 138 ~~~~~~~g~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 138 LATGTALAMVLGLPLGRVIGQYL--GWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999888877 9999999988887776655443 4654
No 106
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.51 E-value=2.1e-12 Score=121.17 Aligned_cols=250 Identities=14% Similarity=0.088 Sum_probs=155.6
Q ss_pred hHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCC-cchhHHHHHhhHHH
Q 042372 6 AVIMSEYAN-KRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGD-YLWRIVLMFGAVPA 83 (402)
Q Consensus 6 ~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Wr~~f~~~~i~~ 83 (402)
.++..|.++ +++|.+..+.-..+..+|.++...+...+...+++. .. .+|++..++.+++.
T Consensus 125 ~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~-----------------~~~~~~~~~~~v~~iv~ 187 (428)
T PF13347_consen 125 NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGG-----------------DTSNGYRWMALVLAIVG 187 (428)
T ss_pred hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-----------------ccchHHHHHHHHHHHHH
Confidence 467788887 578999999999999999987777777666444321 22 38999999887777
Q ss_pred HHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 84 ALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 84 ~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
++..+ ..+.++|.++. ..++ +++.+.++.++....++ .+.......
T Consensus 188 ~v~~~i~~~~~ke~~~~-----~~~~-------------------------~~~~~~~~~~~~~~~nr---~~~~l~~~~ 234 (428)
T PF13347_consen 188 LVFFLITFFFVKERSVE-----VTEQ-------------------------EKKISLRDSLRSLFRNR---PFRILLLAF 234 (428)
T ss_pred HHHhhhhhheeeecccc-----cccc-------------------------ccccccccchhhhcccc---hHHHHHHHH
Confidence 76544 44556772110 0000 00112222222222222 122222233
Q ss_pred HHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
++............+++.+. .+.+ .. .........++.+++.++.++++||+|+|+.+..+.++.+
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~~~-~~------------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLGNE-GL------------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAA 301 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcCc-hh------------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHH
Confidence 33333333333344555554 3333 21 1125556677788888899999999999999999998888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch-------hhhhhhHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA-------RLRSTCHG 314 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~ 314 (402)
++.+++.+... .......+.....+.+........+++.+|..+. +..|...|
T Consensus 302 ~~~~~~~~~~~--------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 302 LGFLLLFFLGP--------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHHHh--------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 88777666421 1223333444444444455556788888998763 34588899
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhc
Q 042372 315 ISAAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
+......++..+++.+.+.+.+..
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988887665
No 107
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.51 E-value=5.7e-13 Score=124.48 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-chh
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-GRF 230 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr 230 (402)
+.++.++...+...+.+|++..++|.|+.+ +|+++.+.+. ..........++.+++|+++||+ |||
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~------------i~~~~~~~~~l~~ligG~LaDRilGrr 76 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYE------------LFSAYCSLVYVTPILGGFLADKVLGNR 76 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence 456666666677778899999999999875 7888876544 55556666677788999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh--h
Q 042372 231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR--L 308 (402)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~ 308 (402)
+.++++.++..++.+++.... ...........+. ..+.....+...++++|.+|++ .
T Consensus 77 r~iliG~il~~lg~lll~~~~--------------------~~~~~~~l~l~li-~iG~G~~~~~~~alv~elfp~~~~~ 135 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASE--------------------IHPSFLYLSLAII-VCGYGLFKSNVSCLLGELYEPTDPR 135 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------------cchhHHHHHHHHH-HHhcccccccHHHHHHHHCCCCCcc
Confidence 999999888777766554311 0101111111111 1112222344556789999975 7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372 309 RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 309 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (402)
|+++.++.+...++|++++|.+.+++.+.. +|+..|.+.++..+++.+..+
T Consensus 136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEY--SWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHHHhhh--ChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877 899999887666555555544
No 108
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.51 E-value=3.7e-13 Score=125.52 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=130.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch
Q 042372 150 KHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR 229 (402)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr 229 (402)
+++......+...+......+......|.+.+++|.++.+.+. ......++..++.++.|+++||+||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~ 79 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGW------------AFSAGILGLLPGALLGGRLADRIGR 79 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334555555566666666667777788888889998886555 7777788888899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhh
Q 042372 230 FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLR 309 (402)
Q Consensus 230 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 309 (402)
|+.+..+.++..++.++.... .+.+.. .+.....+.+.....+....++.|.+|++.|
T Consensus 80 r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r 137 (406)
T PRK11551 80 KRILIVSVALFGLFSLATAQA---------------------WDFPSL-LVARLLTGVGLGGALPNLIALTSEAVGPRLR 137 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHh---------------------ccHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHH
Confidence 999999887766665554442 222222 2233333333333445566788999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 310 STCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 310 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
+++.++.+....+|..+++.+.+.+.+.. +|+..|++.+++.++..++.. ++||+.
T Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 138 GTAVSLMYCGVPFGGALASVIGVLAAGDA--AWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccc--CHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999998887777665 899888887776665554444 457754
No 109
>PRK10054 putative transporter; Provisional
Probab=99.51 E-value=5.6e-13 Score=123.52 Aligned_cols=176 Identities=11% Similarity=-0.027 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
++.+....++...+.+....++|.+++ ++|++..+.+. ......++.+++.++.|+++||+|||+.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~ 76 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGY------------AMTIALTIGVVFSLGFGILADKFDKKRYM 76 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcCcchhH
Confidence 444445555666667777777777775 48999887655 66666777778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
+++.++..++.+.+.+. ++.+..++...+. +.......+....+..|.+|++.|+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (395)
T PRK10054 77 LLAITAFASGFIAIPLV---------------------NNVTLVVLFFALI-NCAYSVFSTVLKAWFADNLSSTSKTKIF 134 (395)
T ss_pred HHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHhHHHHHH
Confidence 88887776666555443 2222222222222 2222233445667778999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
++.+....+|.+++|.+.+.+.. . +|+.+|.+.+++.++..+... ++||.+
T Consensus 135 g~~~~~~~lg~~igp~l~~~l~~-~--g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 135 SLNYTMLNIGWTVGPPLGTLLVM-Q--SINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-h--ccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998875 3 899999988877777655544 345543
No 110
>PRK09669 putative symporter YagG; Provisional
Probab=99.51 E-value=3e-12 Score=120.70 Aligned_cols=249 Identities=13% Similarity=0.064 Sum_probs=136.1
Q ss_pred HHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372 7 VIMSEYA-NKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL 85 (402)
Q Consensus 7 ~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~ 85 (402)
++.+|+. ++++|++..++...+..+|..+++.+...+...++. .....+|+..+.+.++.+++
T Consensus 132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~----------------~~~~~g~~~~~~i~~ii~~v 195 (444)
T PRK09669 132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGK----------------GDEQKGYFYAMMVMGLLGVV 195 (444)
T ss_pred HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CchhhhHHHHHHHHHHHHHH
Confidence 5778888 568899999999888899888888776655543321 11356899988887776665
Q ss_pred HHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372 86 TYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL 164 (402)
Q Consensus 86 ~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (402)
..+. .+..+|.++. ++ ++ +.+.++.++....++. ++......+.
T Consensus 196 ~~~~~~~~~~e~~~~-----~~-~~--------------------------~~~~~~~~~~~~~n~~---~~~l~~~~~~ 240 (444)
T PRK09669 196 LFFCCFFMTKERYTP-----EV-DN--------------------------SSSVWKDLKLLLGNSQ---WRIMFIFNVV 240 (444)
T ss_pred HHHHHhCCeEEecCC-----CC-cC--------------------------CCCHHHHHHHHhCCch---HHHHHHHHHH
Confidence 5443 3334553210 00 00 0111111111111121 2222222222
Q ss_pred HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372 165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~ 244 (402)
............+++.+.. +...+ ..........+..+++.++.++++||+|+|+.+..+.++.+++.
T Consensus 241 ~~~~~~~~~~~~~y~~~~~-~~~~~-----------~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 241 LLTAVVTRGGATLYYVNYV-LLRPD-----------LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHhhhhheeeeee-cCCHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 2122222222223333322 22121 11113344556667777889999999999999887765544433
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-------hhhhhhhHHHHH
Q 042372 245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-------ARLRSTCHGISA 317 (402)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~ 317 (402)
..+... .. .+.+.. .+..+..+.+.....+..+++.+|..+ .+..|...|+.+
T Consensus 309 ~~~~~~----~~---------------~~~~~~-~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~ 368 (444)
T PRK09669 309 ALIFFI----PP---------------SNVWLI-FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNL 368 (444)
T ss_pred HHHHHh----Cc---------------chHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHH
Confidence 222221 00 122222 222223333344445677778888775 234567788999
Q ss_pred HHHHHHHHHHHHhHHHHhhhc
Q 042372 318 AAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 318 ~~~~~g~~i~~~~~~~~~~~~ 338 (402)
.+..+|..+++.+.+.+.+..
T Consensus 369 ~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 369 FAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999988766
No 111
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.49 E-value=8.4e-13 Score=117.95 Aligned_cols=176 Identities=17% Similarity=0.131 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII 232 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 232 (402)
...+.+.+..|.....-+.....+|.+.++++.+...++. ..+.+.++..++.++...+.||+.||++
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~------------lis~yAl~~ai~ap~l~~lt~r~~Rr~l 80 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQ------------LITAYALGVALGAPLLALLTGRLERRRL 80 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 3567777888888888889999999999999999987766 8888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372 233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
++....++.++.++..+. .++....+..+..+.......++..++..++.|+++|+++
T Consensus 81 Ll~~l~lFi~~n~l~alA----------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~A 138 (394)
T COG2814 81 LLGLLALFIVSNLLSALA----------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRA 138 (394)
T ss_pred HHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhH
Confidence 999999999998888875 2234444455555555555666778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cc
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VP 364 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 364 (402)
.++..+...++..+|..+..++-+.. |||.+|++.+++.++..+..+. +|
T Consensus 139 iaiv~~G~tlA~v~GvPLGt~ig~~~--GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 139 LALVFTGLTLATVLGVPLGTFLGQLF--GWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998 9999999999999998887774 48
No 112
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.49 E-value=1e-12 Score=124.41 Aligned_cols=176 Identities=11% Similarity=-0.021 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh---cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc-cc
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPA---TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR-IG 228 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr-~g 228 (402)
+.++.+....++..+.+|+...++|.|+++ +|++..+.+. ......++..++.+++|+++|| +|
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~------------~~~~~~~~~~~~~~~~G~laDr~~G 77 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFI------------IFGAYSALVYLLTSVGWWFGDRVWG 77 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH------------HHHHHHHHHHHHHhhHHHHHHhhcc
Confidence 355666667777778889999999999875 6888776554 6777778888889999999999 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh-
Q 042372 229 RFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR- 307 (402)
Q Consensus 229 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~- 307 (402)
||++++++.++.+++.+++... .+..... +.....+.+.....+...++.++.+|++
T Consensus 78 ~~~~l~~~~~~~~~g~~~~~~~---------------------~~~~~~~-~~~~l~g~g~g~~~~~~~~~~a~~~~~~~ 135 (475)
T TIGR00924 78 TKKTMVLGGIVLMLGHFMLAMS---------------------IYPDLIF-YGLGTIAVGSGLFKANPSSMVGKLYERGD 135 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc---------------------ccHhHHH-HHHHHHHhccccccCCHHHHHHHhcCCCC
Confidence 9999999998888877766653 1111222 2222233333334456667778999875
Q ss_pred --hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 308 --LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 308 --~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
.|+.+.++.+...++|.+++|.+.+++.+.. +|+..|.+.++..+++.+..++.+
T Consensus 136 ~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~--g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 136 MPRRDGGFTLFYMSINIGSFISPLLAGVIAENY--GYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred cccccceehhHHHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHcc
Confidence 4888999999999999999999999998877 899999887766666555544433
No 113
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.49 E-value=2.2e-13 Score=125.57 Aligned_cols=167 Identities=11% Similarity=0.031 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372 165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~ 244 (402)
............|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+.++.+.++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 74 (379)
T TIGR00881 7 YYLVRKNFALAMPYLVEEIGLSKTDLGL------------LLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVN 74 (379)
T ss_pred HHHhHHhhhhhhHHHHHHhCCCHhHHHH------------HHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHH
Confidence 3344455566678777888998886555 7777788888899999999999999999999988887777
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372 245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA 324 (402)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~ 324 (402)
++.... .+. ....+..+..+.+.....+...++..|.+|++.|+.+.++.+....+|.
T Consensus 75 ~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 132 (379)
T TIGR00881 75 LFFGFS---------------------TSL-WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGG 132 (379)
T ss_pred HHHHHh---------------------hhH-HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHH
Confidence 766654 222 2333333333444444556777888999999999999999999999999
Q ss_pred HHHH-HhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 325 IVGA-FGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 325 ~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
.+++ .+...+.+.. +|+..|++.+++.++..++.+ +.||++
T Consensus 133 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 133 GLLPPLVLFGIAELY--SWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 9999 4555555554 889988888777666555544 346543
No 114
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.49 E-value=6.6e-13 Score=124.65 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.+....+.++......+......|.+.+++|.++.+.+. ......++..++.++.|+++||+|||+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~------------~~~~~~~~~~l~~~~~g~l~dr~g~r~~l 86 (426)
T PRK12307 19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAF------------LATAAFIGRPFGGALFGLLADKFGRKPLM 86 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 445555555555566666667778888889998876554 66677788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
.++.++.+++.++..+. .+. ....+...+.+.+..+..+....++.|.+|++.|+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~ 144 (426)
T PRK12307 87 MWSIVAYSVGTGLSGLA---------------------SGV-IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKAS 144 (426)
T ss_pred HHHHHHHHHHHHHHHHH---------------------hHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhh
Confidence 99988888887766653 222 23333333334433444556667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHH
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVV 352 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (402)
++......+|.++++.+.+.+.+.. +|+..|++....
T Consensus 145 ~~~~~~~~lg~~~~~~l~~~l~~~~--~w~~~f~i~~~~ 181 (426)
T PRK12307 145 AFLVSGFGIGNIIAAYFMPSFAEAY--GWRAAFFVGLLP 181 (426)
T ss_pred hHHHHHHhHHHHHHHHHHHHHcccC--CHHHHHHHHHHH
Confidence 9999999999999998888887766 899988875433
No 115
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.49 E-value=3.5e-12 Score=120.88 Aligned_cols=144 Identities=12% Similarity=0.020 Sum_probs=85.2
Q ss_pred HHHHhhhcccchhhhhhccccchhH-------HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHH
Q 042372 207 LVALFATVPGYWFTVFLIDRIGRFI-------IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMI 279 (402)
Q Consensus 207 ~~~~i~~~~g~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (402)
....+..++.+++.+++.||+++|+ -+.+|+++.+++++.+..........+ . ..+.++. +
T Consensus 316 ~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~-~----------~~s~~~~-i 383 (489)
T PRK10207 316 ALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQ-G----------LTSPWFI-V 383 (489)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-C----------ccCHHHH-H
Confidence 3344445556667789999999886 356676666666544432111011000 0 0222333 3
Q ss_pred HHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc--------CCCchhhhHHHHH
Q 042372 280 LYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG--------DKQIKQSIIALAV 351 (402)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~ 351 (402)
...+..+.+.....+....++.+..|++.++.++|+.+....+|+.++..+........ ...+...|...++
T Consensus 384 ~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 463 (489)
T PRK10207 384 LVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGL 463 (489)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHH
Confidence 33333344445555667778889999999999999999999999999887775442100 0023456666666
Q ss_pred HHHHHHHHHhh
Q 042372 352 VNFLGFLCSFM 362 (402)
Q Consensus 352 ~~~~~~~~~~~ 362 (402)
..+++.++.+.
T Consensus 464 ~~~~~~v~~~~ 474 (489)
T PRK10207 464 VTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHHHH
Confidence 66655555544
No 116
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.48 E-value=1e-12 Score=125.50 Aligned_cols=179 Identities=15% Similarity=0.083 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII 232 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 232 (402)
..+..+++..+.............|.+.++++.+..+.+. ....+.++...+.+..|+++||+|||+.
T Consensus 6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~------------~~~~~~l~~~~~~~~~G~l~D~~Grk~~ 73 (495)
T PRK14995 6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLW------------IIDIYSLVMAGMVLPMGALGDRIGFKRL 73 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3455555666666666666777789999998888776544 4455566666667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhh
Q 042372 233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRST 311 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~ 311 (402)
++++..+..++.++.+.. ++.+.+ ++...+.+.+..+..+.......+.+ |++.|++
T Consensus 74 l~~~~~~~~~~~~~~~~a---------------------~~~~~l-i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~ 131 (495)
T PRK14995 74 LMLGGTLFGLASLAAAFS---------------------PTASWL-IATRALLAIGAAMIVPATLAGIRATFTEEKQRNM 131 (495)
T ss_pred HHHHHHHHHHHHHHHHHc---------------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998888887776653 222223 33333333333333344444444554 7899999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
+.|+......+|..++|.+.+.+.+.. +|++.|++...+.++..++.+ ++|+.+
T Consensus 132 ~~g~~~~~~~~g~~~gp~lgg~l~~~~--gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 132 ALGVWAAVGSGGAAFGPLVGGILLEHF--YWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999887 999999988777776665555 446644
No 117
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.48 E-value=4.4e-13 Score=128.10 Aligned_cols=178 Identities=12% Similarity=0.113 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
++.+....+.............|.+.+++|.+..+.+. ......++.+++.++.|+++||+|||+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 71 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQW------------VITSYMLANAISIPLTGWLAKRFGTRRLFL 71 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhH------------HHHHHHHHHHHHHHhHHHHHHHhCcHHHHH
Confidence 34444455555555566667789899999988776554 667777888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
.+.++..++.++.... .+. ...++.....+.+.....+....++.|.+|++.|+.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 129 (485)
T TIGR00711 72 ISTFAFTLGSLLCGVA---------------------PNL-ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMA 129 (485)
T ss_pred HHHHHHHHHHHHHhCc---------------------CCH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHH
Confidence 9988777776665442 222 233333344444444455667788899999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372 315 ISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNG 368 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~ 368 (402)
+......+|..++|.+.+++.+.. +|+..|++.+.+.++..++.++ +||.++
T Consensus 130 ~~~~~~~~g~~~g~~~~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 130 IWGLTVLVAPALGPTLGGWIIENY--HWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHHHHHHhhhhhccHhHhccCc--CceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 999999999999999999998876 8999999887777766655554 466443
No 118
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.48 E-value=1.2e-12 Score=125.44 Aligned_cols=149 Identities=20% Similarity=0.146 Sum_probs=108.2
Q ss_pred HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372 204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL 283 (402)
Q Consensus 204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (402)
.......++.+++.++.|+++||+|||+.+.++.++..++.++....... .. ......+++..+
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~~--------------~~~~~~~~~~r~ 123 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--SP--------------KSVMATLCFWRF 123 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--cc--------------chHHHHHHHHHH
Confidence 36777788889999999999999999999998888777776655543110 00 111233444444
Q ss_pred HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh---------------------cCCCc
Q 042372 284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK---------------------GDKQI 342 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~---------------------~~~~~ 342 (402)
..+++..+..+....+.+|.+|++.|+++.++.+....+|..+++.+...+... ...+|
T Consensus 124 l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 203 (502)
T TIGR00887 124 WLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMW 203 (502)
T ss_pred HHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccH
Confidence 445545555667788999999999999999999999999999888777654321 01169
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccCCC
Q 042372 343 KQSIIALAVVNFLGFLCSFMVPETNG 368 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~et~~ 368 (402)
+..+.+.++..++..++.+++||+.+
T Consensus 204 R~~~~~~~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 204 RILIGFGAVPALLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 99998877777776666667899854
No 119
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.48 E-value=3e-12 Score=121.00 Aligned_cols=164 Identities=12% Similarity=0.009 Sum_probs=107.8
Q ss_pred HHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372 171 TINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR 250 (402)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 250 (402)
.+....|.+.++ |++..+.+. ......++..++.++.|+++||+|||++++++.++.+++.+++.+.
T Consensus 47 ~~~~~~p~l~~~-g~s~~~~g~------------~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~ 113 (452)
T PRK11273 47 NFALAMPYLVEQ-GFSRGDLGF------------ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 113 (452)
T ss_pred HHHHhhHHHHHc-CCCHHHHHH------------HHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhh
Confidence 345566776666 888876554 6777788888899999999999999999999988777777666553
Q ss_pred hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHH-HHHH
Q 042372 251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAI-VGAF 329 (402)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~-i~~~ 329 (402)
... . .+. ....+.....+.+.....+.....+.|.+|++.|+++.++.+....+|+. .++.
T Consensus 114 ~~~---~--------------~~~-~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 175 (452)
T PRK11273 114 PWA---T--------------SSI-AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL 175 (452)
T ss_pred hcc---c--------------ccH-HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 210 0 112 22222222222223333344445668899999999999999888888764 4554
Q ss_pred hHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 330 GVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
......... +|+..|++.+++.++..++.+ ++||+.
T Consensus 176 ~~~~~~~~~--gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 176 FLLGMAWFN--DWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 432332222 899999988877666554444 457654
No 120
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.48 E-value=4.2e-13 Score=116.54 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=144.3
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
.++.++++|..++|+|++.++.++...++|.++||.+|+++...... ...+-.-.+-++..+.
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~-----------------~g~~p~alP~~~v~i~ 201 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSI-----------------SGSYPFALPCLLVFIL 201 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhh-----------------hccCchHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999741100 0222222223334444
Q ss_pred HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhh----HHHHH
Q 042372 83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHG----LHLLG 157 (402)
Q Consensus 83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 157 (402)
+.. ..+..+++||+-+- +++.++. ..+.+..+.+ . + ..+..+.++....|+.. ...+.
T Consensus 202 a~~~v~~~~~~lpETL~~----rk~~~~~-~~~~~~~~~~--~---~-------~~~~~~~~~v~~lrn~p~~~~i~~~~ 264 (451)
T KOG2615|consen 202 AAGDVTFFPWFLPETLPL----RKRNDEH-STLQEAADDR--L---A-------LLKFARIFKVAALRNPPLLDFISVLR 264 (451)
T ss_pred HHHHHHHHHHhCCccccc----hhhcccc-cchhhhhhhh--h---h-------hcchhhhhhhhhhcCccccchHHHHH
Confidence 444 45566789998321 1111110 0000000000 0 0 00000111111111000 01111
Q ss_pred H-HHHHHHHHHHHHHHHHhHhhhh--hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc--hhHH
Q 042372 158 T-TSTWFLLDIAFYTINLTQKDIY--PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG--RFII 232 (402)
Q Consensus 158 ~-~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~ 232 (402)
. .+..+.....+ ....+.+..+ +.+|+++.+.+. +.+..++...+.........||.. -+-.
T Consensus 265 i~~l~~~ly~~l~-s~~~~t~~~l~~~rfg~ss~~~G~------------vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~ 331 (451)
T KOG2615|consen 265 IFGLHYFLYLELF-SGLENTVLFLTHGRFGYSSMQQGK------------VLSTTGLLMLVIQLALVPILPRYKGNIKAV 331 (451)
T ss_pred HHHHHHHHHHHHH-HHHHhhHHHhhcCccCCChhhhee------------eeehhhHHHHHHHHhccccccccccchhhH
Confidence 1 11122222222 2222223333 458999888665 555555555554444455556654 3334
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372 233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
+..+...+.-..+++... ... ..+.....+..+.+....+....++....|.+.||+.
T Consensus 332 l~~~l~~~vP~~llls~~---------------------~~~-~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~ 389 (451)
T KOG2615|consen 332 LLFSLLLIVPAFLLLSLA---------------------RTP-VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTL 389 (451)
T ss_pred HHHHHHHHHHHHHHHhcc---------------------ccc-hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHH
Confidence 433333222222222221 111 2222222222232333344556677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHH
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFL 355 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (402)
+|+....+.++.++||.+.|....+.. +-+.++...+.+.++
T Consensus 390 ~Gi~~Sl~alaRaiGPlv~g~i~~Ws~-~~~~a~~~~~~L~~~ 431 (451)
T KOG2615|consen 390 NGIFRSLGALARAIGPLVSGVIFSWSQ-GAQPAYIAWGALLLI 431 (451)
T ss_pred HHHHHHHHHHHHHhhhhhhheeEEEec-CCCceeeehHHHHHH
Confidence 999999999999999999988876543 233344333333333
No 121
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.48 E-value=1.6e-12 Score=123.38 Aligned_cols=176 Identities=9% Similarity=-0.001 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.+.......+......+....+.|.+.+++|++..+.+. ......++..++.++.|+++||+|||+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~G~r~~~ 104 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGN------------AGIASVSGSIFSRLAMGPVCDLYGPRYGS 104 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 344444444444455566667778888889998876544 55566777788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
..+.++.+++.++.+.. .+...+.+ ..++.+++..... ....+++|.+|++.|+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~---------------------~s~~~l~~-~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~ 161 (476)
T PLN00028 105 AFLLMLTAPAVFCMSLV---------------------SSATGFIA-VRFFIGFSLATFV-SCQYWMSTMFNGKIVGTAN 161 (476)
T ss_pred HHHHHHHHHHHHHHHHh---------------------cCHHHHHH-HHHHHHHHHHhhH-HHHHHHHHhcChhheeHHH
Confidence 88877777766655543 22222222 2222222222222 2334678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhh---c----CCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQK---G----DKQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
|+.+....+|..+++.+.+.+... . ..+|+..|++.+++.++..+..++++
T Consensus 162 g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 162 GIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 999988888888887666554321 0 01799999998888877666666554
No 122
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.47 E-value=1.9e-12 Score=122.72 Aligned_cols=178 Identities=9% Similarity=0.009 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc-cc
Q 042372 151 HGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR-IG 228 (402)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr-~g 228 (402)
+++.++.+++..+...+.+|+...+++.|+++ +|++..+... .............+++|+++|| +|
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~------------i~~~~~~~~~~~~~~~G~laDr~~G 79 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFI------------TFGAFAALVYGLISIGGYVGDHLLG 79 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHhhHHHhhhhccc
Confidence 44566777777777888999998888888765 8887765432 3333333334444578999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh-
Q 042372 229 RFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR- 307 (402)
Q Consensus 229 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~- 307 (402)
||++++++.++..++.+.+.+.. .....+.+.....+.+.....+...+++.|.+|++
T Consensus 80 ~r~~~~~g~~~~~~g~~~~~~~~---------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~ 138 (489)
T PRK10207 80 TKRTIVLGAIVLAIGYFMTGMSL---------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD 138 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc---------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc
Confidence 99999999998888887766531 11112222223333434445556677889999877
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 308 -LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 308 -~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.|+.+.++.+...++|.+++|.+.+++.+.. +|+..|++.++..+++.+...+.
T Consensus 139 ~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~--gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 139 PRLDGAFTLFYMSINIGSLISLSLAPVIADKF--GYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHHHHHHc
Confidence 4578899999999999999999999999887 89999988655444444443333
No 123
>PRK03699 putative transporter; Provisional
Probab=99.47 E-value=3.1e-12 Score=118.75 Aligned_cols=174 Identities=11% Similarity=0.026 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII 232 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 232 (402)
+.++..++.++............+|.+.++++++..+.+. ......++..++.++.|++.||+|||+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~------------~~s~~~~~~~i~~~~~g~l~dr~g~r~~ 74 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSN------------TFTFLNAGILISIFLNAWLMEIIPLKRQ 74 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455555555555555666777788888889998886554 6666777888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372 233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
+..+.++.+++.++.... ++.+.+.+ .....+.+.....+....++.|.+|++.|+.+
T Consensus 75 ~~~~~~~~~i~~~l~~~~---------------------~~~~~~~~-~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 132 (394)
T PRK03699 75 LIFGFALMILAVAGLMFS---------------------HSLALFSI-AMFVLGVVSGITMSIGTFLITHVYEGKQRGSR 132 (394)
T ss_pred HHHHHHHHHHHHHHHHHc---------------------chHHHHHH-HHHHHHHhhHhhccchhHHhhhhcccchHHHH
Confidence 998887777776665542 22222222 22222222222334555677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (402)
.++.+....+++.++|.+.+.+..... +|+..|.+.+++.++..++.+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~-gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 133 LLFTDSFFSMAGMIFPIIAAYLLARSI-EWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888999988887654322 899999988877766555444
No 124
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.47 E-value=1.7e-12 Score=120.55 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372 157 GTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG 236 (402)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~ 236 (402)
......+....+........|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~ 74 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHI------------AFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG 74 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence 333334444445555556788888888888876544 66666777788888999999999999999988
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372 237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
.++..++.+..... .+..... ......+.+.....+....+..|.+|++.|+++.++.
T Consensus 75 ~~~~~i~~~~~~~~---------------------~~~~~~~-~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 132 (392)
T PRK10473 75 AALFIIASLLCSLA---------------------ETSSLFL-AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLL 132 (392)
T ss_pred HHHHHHHHHHHHHh---------------------CcHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 87777766655542 1222222 2222223222333345667789999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNG 368 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~ 368 (402)
+....++..++|.+.+.+.+.. +|+..+++.+++.++..++.+ ++||++.
T Consensus 133 ~~~~~i~~~~~~~i~~~l~~~~--g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 133 NGITCIIPVLAPVLGHLIMLKF--PWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc--ChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999988877665 899999888877776666554 4577643
No 125
>PRK10504 putative transporter; Provisional
Probab=99.47 E-value=1.5e-12 Score=123.92 Aligned_cols=177 Identities=12% Similarity=0.116 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.++.+....++.....+....+.|.+.+++|.++.+.+. ......++..++.++.|+++||+|||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 78 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHM------------VIVSYVLTVAVMLPASGWLADRVGVRNIF 78 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 455566666666667777778899999999998876544 55556677777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
+.+..+.+++.+..... .+. ....+...+.+.+.....+...+++.|.+|++.|+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (471)
T PRK10504 79 FTAIVLFTLGSLFCALS---------------------GTL-NELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAM 136 (471)
T ss_pred HHHHHHHHHHHHHHHHh---------------------CCH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 98877777666554432 112 22222333333333334456667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccC
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PET 366 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et 366 (402)
++......+|..++|.+.+.+.+.. +|+..|.+.....++..+..... |+.
T Consensus 137 ~~~~~~~~~g~~~g~~~~g~l~~~~--gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 137 TFVTLPGQVGPLLGPALGGLLVEYA--SWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999998877 89999988777766666655543 543
No 126
>PRK11462 putative transporter; Provisional
Probab=99.47 E-value=1.2e-11 Score=116.67 Aligned_cols=248 Identities=9% Similarity=-0.048 Sum_probs=129.2
Q ss_pred HHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372 7 VIMSEYAN-KRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL 85 (402)
Q Consensus 7 ~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~ 85 (402)
++..|.++ +++|.+..++...+..+|.++++.+...+....++ .....+|+....+.++++++
T Consensus 132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~----------------~~~~~g~~~~~~i~~ii~~i 195 (460)
T PRK11462 132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG----------------DNKPLGFQGGIAVLSVVAFM 195 (460)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CchhhhHHHHHHHHHHHHHH
Confidence 56788887 78999999999999999988888877665533321 11335799888777776665
Q ss_pred HHHHH-hhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372 86 TYYWR-MKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL 164 (402)
Q Consensus 86 ~~~~~-~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (402)
..+.. ...+|.++. +++ +.+.++.++....++.++.+....+....
T Consensus 196 ~~~i~~~~~kE~~~~----~~~-----------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~ 242 (460)
T PRK11462 196 MLAFCFFTTKERVEA----PPT-----------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNIL 242 (460)
T ss_pred HHHHHHhcceeccCC----Ccc-----------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 54433 334554211 000 00111112222222222222222222222
Q ss_pred HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372 165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~ 244 (402)
......+...|...+. .+. +.. .........++.+++.+++++++||+|+|+.+..+..+.++..
T Consensus 243 ~~~~~~~~~~y~~~y~--~g~-~~~------------~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~ 307 (460)
T PRK11462 243 AVCVRGGAMMYYVTWI--LGT-PEV------------FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVIS 307 (460)
T ss_pred HHHHHHhHhhhhhhhh--cCC-hHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 2222222222322222 221 111 1114445566777788899999999999988765544333322
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-----hhhh--hhhHHHHH
Q 042372 245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-----ARLR--STCHGISA 317 (402)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~ 317 (402)
+++.+. .. ...........+. +.+.....+..+++.+|... +..| |...+...
T Consensus 308 ~~~~~~----~~---------------~~~~~~~~~~~l~-g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~ 367 (460)
T PRK11462 308 LAMFFV----PM---------------QASITMFVFIFVI-GVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTL 367 (460)
T ss_pred HHHHHh----ch---------------hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHH
Confidence 222221 10 1111122221222 22222333344555666554 2233 44456667
Q ss_pred HHHHHHHHHHHHhHHHHhhhc
Q 042372 318 AAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 318 ~~~~~g~~i~~~~~~~~~~~~ 338 (402)
....+|..+++.+.+.+.+..
T Consensus 368 f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 368 FVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 889999999999988887654
No 127
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.47 E-value=8e-12 Score=118.31 Aligned_cols=307 Identities=9% Similarity=0.022 Sum_probs=157.5
Q ss_pred CchhHHhhhhccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh
Q 042372 3 PLSAVIMSEYANKRT---RGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG 79 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~---rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~ 79 (402)
|...++++|++|+++ |+++.++++.+.++|.++++.+++.+. +..+||+.|.+.
T Consensus 121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~-----------------------~~~g~~~~f~~~ 177 (475)
T TIGR00924 121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA-----------------------ENYGYHVGFNLA 177 (475)
T ss_pred CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH-----------------------HhcChHHHHHHH
Confidence 567789999998764 888999999999999999999999887 567899999987
Q ss_pred hHHHHHHHHHHhhcC----CCchhHhhhcCCHHH--HHHHHH-----------H-hhccccccccC-----------CCC
Q 042372 80 AVPAALTYYWRMKMP----ETARYTALVEGNQKK--AAVDMA-----------K-VLDTDINVATS-----------AYP 130 (402)
Q Consensus 80 ~i~~~~~~~~~~~lp----esp~~l~~~~~~~~~--~~~~~~-----------~-~~~~~~~~~~~-----------~~~ 130 (402)
++..++.++...+.+ +.|+. .++.++++ ...... . ....+...... ...
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFF 255 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 765554444433332 22211 00000110 000000 0 00000000000 000
Q ss_pred CCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372 131 APVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVA 209 (402)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (402)
....++ ..... .+++.+.++.++.........+.......+.+.++ .+.+...... -...+..++
T Consensus 256 ~~~~~~-----~~~~~-~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~i--------p~~~~~~~n 321 (475)
T TIGR00924 256 RLAFKP-----RLDAV-ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSV--------PVIWFQSLN 321 (475)
T ss_pred HHHHhc-----cCCHH-HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEE--------CHHHHHhhh
Confidence 000000 00000 11111122333333333333333333334444333 2221111000 011133334
Q ss_pred Hhhhcccchhh----hhhccc-cchhHHH--HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH
Q 042372 210 LFATVPGYWFT----VFLIDR-IGRFIIQ--LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG 282 (402)
Q Consensus 210 ~i~~~~g~~~~----g~l~dr-~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (402)
.+..++..++. .++.+| .+.+... .+|.++.+++.+.+.+......... ..+.++.+...
T Consensus 322 ~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~-------------~~s~~~~i~~~ 388 (475)
T TIGR00924 322 PFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGG-------------LTSPWFMVLIY 388 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------------ccCHHHHHHHH
Confidence 44444433332 344444 2223333 5677777777666554321111100 11223333344
Q ss_pred HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372 283 LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
++...+.....|....+..+..|++.||+..|+......+|..+++.+.....+.. ++...|...++..++..++.++
T Consensus 389 ~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 389 LFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ--GVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHHHH
Confidence 44445566667788888999999999999999999999999999988887765544 6777777777776666665554
Q ss_pred c
Q 042372 363 V 363 (402)
Q Consensus 363 l 363 (402)
+
T Consensus 467 ~ 467 (475)
T TIGR00924 467 M 467 (475)
T ss_pred H
Confidence 4
No 128
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.47 E-value=7.3e-13 Score=120.90 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhHh-hhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQK-DIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
+.............| .+.+++|.+..+.+. ......++..++.++.|+++||+|||+.++.+.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~ 73 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELGLSPSQIGL------------LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHH------------HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence 333344445555566 666778888887655 6777778888889999999999999999999988888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 321 (402)
++..+..+. .+.+ ..++..+..+.+.....+....++.|.+|++.|+.+.++.+....
T Consensus 74 ~~~~~~~~~---------------------~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (352)
T PF07690_consen 74 LGSLLLAFA---------------------SNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFS 131 (352)
T ss_dssp HHHHHHHHH---------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHH
T ss_pred hHHHHhhhh---------------------hhHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhh
Confidence 874444432 1222 333333344444445556777888999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccC
Q 042372 322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPET 366 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et 366 (402)
+|..++|.+.+.+.+.. +|+..|++.+++.++..++.. ++++.
T Consensus 132 ~g~~~g~~l~~~l~~~~--~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYF--GWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHHHHHHHHHHHCCCHC--HHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred hhhhcccchhhhhhhcc--ccccccccccchhhhhhhhHhhhhhhc
Confidence 99999999999998766 899999999998888877533 33433
No 129
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.46 E-value=1.2e-12 Score=120.14 Aligned_cols=164 Identities=17% Similarity=-0.036 Sum_probs=117.3
Q ss_pred HHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042372 169 FYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILG 248 (402)
Q Consensus 169 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 248 (402)
........|.+..+.+.+..+.+. ......++.+++.++.|+++||+|||+.++.+.++..++.++..
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSL------------AALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHH------------HHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 333444556677777777765444 77777888888899999999999999999988877776666555
Q ss_pred HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372 249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA 328 (402)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~ 328 (402)
....... .+.+.+ .+.....+.+.....+...++..|.+|++.|++..++.+....+|.+++|
T Consensus 83 ~~~~~~~----------------~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 145 (365)
T TIGR00900 83 FVALLGG----------------LNIWQV-YVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGP 145 (365)
T ss_pred HHHHcCC----------------CcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4421100 122222 22233333333344556677889999999999999999999999999999
Q ss_pred HhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 329 FGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.+.+.+.+.. +|+..|++.++..+++.+..+.+
T Consensus 146 ~l~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 146 GIGGLMYATL--GIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988877 89999988777766665555544
No 130
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.46 E-value=1.7e-12 Score=124.35 Aligned_cols=179 Identities=17% Similarity=0.157 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH
Q 042372 152 GLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI 231 (402)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~ 231 (402)
++.+..+.+..+.............|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~ 86 (496)
T PRK03893 19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAAS------------LISAAFISRWFGGLLLGAMGDRYGRRL 86 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 34555566666666666666777778888889988876544 566667778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372 232 IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST 311 (402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 311 (402)
.++.+.++.+++.++..+. .+. ....+...+.+++..+..+....++.|.+|++.|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 144 (496)
T PRK03893 87 AMVISIVLFSVGTLACGFA---------------------PGY-WTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNK 144 (496)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 9998888777777666653 222 222333333333334445556677899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372 312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPET 366 (402)
Q Consensus 312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et 366 (402)
+.++......+|..+++.+.+.+.+.. +|+..|++..+..++..+....+||.
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 145 ASGFLISGFSIGAVVAAQVYSLVVPVW--GWRALFFIGILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999888876 89988876544433333333344654
No 131
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.45 E-value=3.4e-11 Score=114.85 Aligned_cols=307 Identities=9% Similarity=0.086 Sum_probs=173.9
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCC--cchhHHHHHh
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGD--YLWRIVLMFG 79 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Wr~~f~~~ 79 (402)
++.+.+|+-|...+++-..++|+..+...+|.++|.++++++.+.+.+-. ..+..+++ .... .-|+.-|++.
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~-~~~~~it~-----~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG-LSPIGITP-----TDPRWIGAWWLGFLIC 328 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc-cCCCCCCC-----CCcchhhHHHHHHHHH
Confidence 56788999999999999999999999999999999999999988665421 11111111 1112 2477777777
Q ss_pred hHHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCC-CCCCCCCCcccccchhhHHhhhhhHHHHHH
Q 042372 80 AVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSA-YPAPVSPEASTYGLFSKEFVQKHGLHLLGT 158 (402)
Q Consensus 80 ~i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (402)
+...++..+..+++|....- . +++.++ ++ .+..++.++ ........+..++..+.-..--..+.++..
T Consensus 329 g~~~~~~a~p~f~fPk~lp~--~-~~~~~~--~~------~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~ 397 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKELPK--S-QKRKRA--RD------LHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLV 397 (735)
T ss_pred HHHHHHHHHHHHhCcccCcc--c-cccchh--hh------hcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHH
Confidence 77777777777777765321 1 111000 00 000000000 000001111112222211111111366677
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc--hhHHHHH
Q 042372 159 TSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG--RFIIQLG 235 (402)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~~~~ 235 (402)
.+...+....+.+...|+|.|+++ +|.+...+.. +...+...+..+|.+++|+++.|+. .|....+
T Consensus 398 ~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~-----------l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~ 466 (735)
T KOG3626|consen 398 VLASVIESLAITGYITFLPKYLETQFGISASLANI-----------LTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKF 466 (735)
T ss_pred HHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHH-----------HhhhhhhhhhhhhhhccceeeeeecccHHHHHHH
Confidence 777777778888999999999986 8888876543 1334444556677789999999874 3433333
Q ss_pred HHHHHHHHHHH---HHHhhccc----------------cCCC-----CCCC-----------------------------
Q 042372 236 GFLLMSICMAI---LGARYDSL----------------RGKK-----CDAK----------------------------- 262 (402)
Q Consensus 236 ~~~~~~~~~~~---~~~~~~~~----------------~~~~-----~~~~----------------------------- 262 (402)
..+...+..+. ..+..... ..+. |..+
T Consensus 467 ~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~ 546 (735)
T KOG3626|consen 467 VIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTE 546 (735)
T ss_pred HHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcc
Confidence 33322222222 11111000 0000 1111
Q ss_pred -----------------C-----C--CCCccCCCh----hHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 263 -----------------K-----D--PLHEYCDGN----HAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 263 -----------------~-----~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
+ + ..+++++.. ...+++++.+..+....+.. ..+.++...+|++.|+.+.|
T Consensus 547 ~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~-p~~~i~LR~V~~e~ks~AlG 625 (735)
T KOG3626|consen 547 SSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAV-PGMLIVLRCVPPEEKSFALG 625 (735)
T ss_pred cccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccC-cceEEEEEccCchhchhhhH
Confidence 0 0 112233333 23344444444444444443 45567778889999999999
Q ss_pred HHHHHHHH-HHHHHHHhHHHHhhh
Q 042372 315 ISAAAGKA-GAIVGAFGVQYYTQK 337 (402)
Q Consensus 315 ~~~~~~~~-g~~i~~~~~~~~~~~ 337 (402)
+..++.++ |.+-+|.++|++.|.
T Consensus 626 ~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 626 FQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred HHHHHHHHHhcCCchHhhhhhHhh
Confidence 99988776 566788999999875
No 132
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.45 E-value=2.7e-12 Score=120.84 Aligned_cols=182 Identities=13% Similarity=0.029 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.++...+.+..............|.+. +.|.++.+.+. ......++..++.++.|+++||+|||+.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~g~~~~~ 94 (438)
T TIGR00712 28 VFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGF------------ALSAISIAYGFSKFIMGSVSDRSNPRVFL 94 (438)
T ss_pred HHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHH------------HHHHHHHHHHHhhhccchhhhccCCceeh
Confidence 334443433333333333444556554 45888776554 67777788888999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
..+.++.+++.++....... . .+ .....+.....+.+.....+.....+.|.+|++.|+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~---~--------------~~-~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~ 156 (438)
T TIGR00712 95 PAGLILSAAVMLLMGFVPWA---T--------------SS-IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIV 156 (438)
T ss_pred HHHHHHHHHHHHHHhccccc---c--------------ch-HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHH
Confidence 88877777766554432110 0 11 122222222222222233344556678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
++.+....+++.+++.+.+....... +|+..|++.+++.++..+..+ ++||++
T Consensus 157 ~~~~~~~~~g~~~~~~l~~~~~~~~~-~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 157 SIWNCAHNIGGGIPPLLVLLGMAWFN-DWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 99999999999988877665443221 899999998888777655544 456653
No 133
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.45 E-value=2.9e-12 Score=119.54 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=116.1
Q ss_pred HHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042372 169 FYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILG 248 (402)
Q Consensus 169 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 248 (402)
........|.+.++++.++.+.+. ......++..++.++.|.++||+|||+.++.+..+..++.+...
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 96 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPT------------SMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAIL 96 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 333444456677788888775444 56667778888888999999999999999988877777766655
Q ss_pred HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372 249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA 328 (402)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~ 328 (402)
.. .+.+.+. ......+.+.....+....+..|.+|++.|..+.++......++..++|
T Consensus 97 ~~---------------------~~~~~l~-~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 154 (406)
T PRK15402 97 LA---------------------QSIEQFT-LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGP 154 (406)
T ss_pred HH---------------------ccHHHHH-HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2222222 2222222222222345566778999999999999998888888899999
Q ss_pred HhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372 329 FGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNG 368 (402)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~ 368 (402)
.+.+.+.+.. +|+..+++.+++.+++.+..++ .||+++
T Consensus 155 ~i~~~l~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 155 LVGAALIHVL--PWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHcc--CccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9998888766 8999999888887776665543 477643
No 134
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.44 E-value=1e-12 Score=124.13 Aligned_cols=297 Identities=11% Similarity=0.013 Sum_probs=155.1
Q ss_pred chhHHhhhhccccchhHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 4 LSAVIMSEYANKRTRGAFIAAV---FAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~---~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
++-++..|..+ +++....+.. .....+|.++++.+++.+. +..+||..|++.+
T Consensus 140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~-----------------------~~~~~~~~f~~~a 195 (468)
T TIGR00788 140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL-----------------------DKTLTRILFLITA 195 (468)
T ss_pred hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH-----------------------HhcCcchHHHHHH
Confidence 44567888888 5554433333 3334589999999999887 5678999999987
Q ss_pred HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
+..++..+..++++|.+.. ...+..++.......... ... +..+....+ ++....++ .++....
T Consensus 196 ~l~ll~~~~~~~~~E~~~~--~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~-l~~~l~~~---~i~~~l~ 259 (468)
T TIGR00788 196 ALLLLQLFVSNLSKERRAF--VRPRIGTYLEMNMALLTL-GVL---------ANVKVQILG-LRGAIQLL---EIAKPLI 259 (468)
T ss_pred HHHHHHHHHHHhccccccc--ccccccccchhhhhhhhh-hHH---------HHHHHHHHH-HHHHHhcH---HHHHHHH
Confidence 7776666666778886311 001100000000000000 000 000000000 01111111 1111111
Q ss_pred HHHH-HHHHHHHH-HHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372 161 TWFL-LDIAFYTI-NLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 161 ~~~~-~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
..+. ........ ..+. ......|+++...+. ......++.+++..+.+++.+|++.|+++.++.+
T Consensus 260 fifl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G~------------~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~ 326 (468)
T TIGR00788 260 FIFLSYANLPGASGSVFC-ATTQCLPGGPSFSGM------------SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTL 326 (468)
T ss_pred HHHHHHhhcCCCCceeEE-EEcccCCCCcchhhh------------HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 1111 00000000 0000 111347888886655 6666778888899999999999999999998877
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
+.+++..........+... ... ...+.......+.......... ....++++..|++.+++..++.+.
T Consensus 327 l~~~~~~~~~~l~~~~~~~---------~gi--~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s 394 (468)
T TIGR00788 327 LYTLSSLFDLILVKRWNLA---------FGI--SDEVFVLGDSIIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLAS 394 (468)
T ss_pred HHHHHHhCceeeeeccccc---------cCC--CCeeeeeehhHHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHH
Confidence 6666554432211111100 000 0011111111111112222222 346778999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhcCC---CchhhhHHHHHH---HHHHHHHHhhccc
Q 042372 319 AGKAGAIVGAFGVQYYTQKGDK---QIKQSIIALAVV---NFLGFLCSFMVPE 365 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~l~e 365 (402)
+.++|..+++.+.+.+.+..+. .++..+....+. .++...+.+++|+
T Consensus 395 ~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 395 ILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999887631 244444433333 3333344445586
No 135
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.43 E-value=2.6e-12 Score=118.77 Aligned_cols=178 Identities=17% Similarity=0.087 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.++......+......+......|.+.+++|.+..+.+. ......++..++.++.|++.||+|||+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~ 71 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGH------------MISYYALGVVVGAPIIALFSSRYSLKHIL 71 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhH------------HHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence 344555555555556666667788888889998876554 67777888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
..+.++.+++.++.... ++.+.+.+ ...+.+.+.....+....+..|.+|++.|+.+.
T Consensus 72 ~~~~~~~~~~~~l~~~~---------------------~~~~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
T PRK10091 72 LFLVALCVIGNAMFTLS---------------------SSYLMLAI-GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAV 129 (382)
T ss_pred HHHHHHHHHHHHHHHHh---------------------CcHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHH
Confidence 99988888777766553 22223332 223333222222334445678899999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
++......++..+++.+.+.+.+.. +|+..|.+.+++.++..+..+ ++||.+
T Consensus 130 ~~~~~~~~~g~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 130 AGMVSGMTVANLLGIPLGTYLSQEF--SWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999988888766 899999998887766655444 457753
No 136
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.42 E-value=1.3e-12 Score=124.51 Aligned_cols=143 Identities=20% Similarity=0.092 Sum_probs=103.8
Q ss_pred HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372 204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL 283 (402)
Q Consensus 204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (402)
.......++..++.++.|+++||+|||+.++.+.++..++.++...... .......++...
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~r~ 135 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF-------------------ALSVEMLIVGRV 135 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------------------ccchHHHHHHHH
Confidence 3777788888899999999999999999999988877777666644321 111122333333
Q ss_pred HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH---HHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372 284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV---QYYTQKGDKQIKQSIIALAVVNFLGFLCS 360 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (402)
+.+.+.....+....++.|.+|++.|+.+.++.+....+|.++++.+. ....+.. +|+..|++.++..++..+..
T Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 136 LLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL--GWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred HHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCc--cHHHHHHHHHHHHHHHHHHH
Confidence 333333444456677889999999999999999999999999999887 4443444 89999998766666666656
Q ss_pred hhcccCC
Q 042372 361 FMVPETN 367 (402)
Q Consensus 361 ~~l~et~ 367 (402)
+++||+.
T Consensus 214 ~~l~~~~ 220 (481)
T TIGR00879 214 FFLPESP 220 (481)
T ss_pred hcCCCCh
Confidence 6667764
No 137
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.41 E-value=7.1e-12 Score=117.74 Aligned_cols=188 Identities=13% Similarity=0.047 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcC---CchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATG---IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI 231 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~ 231 (402)
++...+.++.............|.+.++++ .+..+.+ ..........++..+|.++.|+++||+|||+
T Consensus 24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~ 94 (432)
T PRK10406 24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLL---------QTAGVFAAGFLMRPIGGWLFGRIADKHGRKK 94 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 333334444444455555555666666653 2322211 2222445566777789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372 232 IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST 311 (402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 311 (402)
.+..+.++.+++.++.++...+.... .......++..+..+.+..+..+...+++.|.+|++.|+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 160 (432)
T PRK10406 95 SMLISVCMMCFGSLVIACLPGYETIG--------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF 160 (432)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchhHH--------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence 99999988888887766642110000 0011223344445555555566777889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhh--------hcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 312 CHGISAAAGKAGAIVGAFGVQYYTQ--------KGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 312 ~~~~~~~~~~~g~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
..++.+.....|.++++.+...+.. .. +|+.+|++.++..++...+...+||++
T Consensus 161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--gWr~~F~i~~~~~ll~~~~~~~~~e~~ 222 (432)
T PRK10406 161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREW--GWRIPFALGAVLAVVALWLRRQLDETS 222 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc--chHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9888877777777777765544432 23 899999987776666544433446653
No 138
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.41 E-value=5.8e-12 Score=116.97 Aligned_cols=179 Identities=12% Similarity=-0.005 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
..+.......+............|.+.++++.++.+.+. ......++..++.++.|+++||+|||+.+
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~Dr~grr~~~ 76 (394)
T PRK11652 9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQA------------VMAAYLLTYGLSQLFYGPLSDRVGRRPVI 76 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence 334344444343334444444567788889998886554 66677788888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
+.+..+..++.+..... .+.+.+ .+.....+.+.....+....+..|.++.+.|+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~---------------------~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (394)
T PRK11652 77 LVGMSIFILGTLVALFA---------------------HSLTVL-IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHAN 134 (394)
T ss_pred HHHHHHHHHHHHHHHHH---------------------ccHHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 98877777666655442 122222 22222222222222234445667888888999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH-hhcccCCC
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS-FMVPETNG 368 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~et~~ 368 (402)
++.+....++..++|.+.+.+.+.. +|+..|++.++..++..+.. +++||++.
T Consensus 135 ~~~~~~~~~~~~~g~~i~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 135 SLLNMGILVSPLLAPLIGGLLTTLF--GWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 9998888899999999999888766 89999998877666554443 34577543
No 139
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.40 E-value=7.9e-12 Score=116.54 Aligned_cols=157 Identities=16% Similarity=0.125 Sum_probs=112.9
Q ss_pred HhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcccc
Q 042372 176 QKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLR 255 (402)
Q Consensus 176 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (402)
+|.+.++++.+....+. ......++..++.++.|+++||+|||++++.+.++.+++.++....
T Consensus 39 l~~i~~~~~~~~~~~~~------------~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----- 101 (413)
T PRK15403 39 IINVVRDFNADVSLAPA------------SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT----- 101 (413)
T ss_pred HHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----
Confidence 34555667777665443 5566667777888899999999999999999888777776665553
Q ss_pred CCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372 256 GKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT 335 (402)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 335 (402)
.+...+ ++..+..+.+.....+..+++..|.+|++.|++..++......++..++|.+.+.+.
T Consensus 102 ----------------~~~~~l-~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 102 ----------------TSMTQF-LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred ----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 222222222222223344567789999999999999999999999999999998888
Q ss_pred hhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372 336 QKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNG 368 (402)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~ 368 (402)
+.. +|+..|++.+++.+++.+..+ .+||+++
T Consensus 165 ~~~--gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 165 HFV--HWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 776 899999998888777766544 4588754
No 140
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.40 E-value=4.8e-12 Score=115.72 Aligned_cols=164 Identities=12% Similarity=0.032 Sum_probs=112.1
Q ss_pred HHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 042372 168 AFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAIL 247 (402)
Q Consensus 168 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 247 (402)
.........|.+.+++|.+..+.+. ......++..++.+..|+++||+|||+++.........+. +.
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g~------------~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~ 72 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELGL------------LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GR 72 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HH
Confidence 3445556678888889999887555 6666677777888889999999999987665433332222 11
Q ss_pred HHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHH
Q 042372 248 GARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVG 327 (402)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~ 327 (402)
... .......++..+..+.+.. .........+|.+|++.|+++.++.+....+|..++
T Consensus 73 ~~~---------------------~~~~~~l~~~R~l~G~g~~-~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~ 130 (368)
T TIGR00903 73 LLD---------------------PFNYEWLLACQLLAALGQP-FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFA 130 (368)
T ss_pred HHH---------------------hccHHHHHHHHHHHHhHhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 0111223333333332222 223344455899999999999999999999999999
Q ss_pred HHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372 328 AFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNG 368 (402)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~ 368 (402)
+.+.+++.+.. +|+..|++.+++.++..++.+ ++||+++
T Consensus 131 ~~~~~~l~~~~--gWr~~f~~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 131 LAAGLKIYTAG--GLQLLIIPIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999988876 999999998888777665555 4587643
No 141
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.40 E-value=9.4e-12 Score=115.81 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
+.......+....+.......+|.++ +++|.+..+.+. ......++..++.++.|+++||+|||+++
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l 84 (399)
T PRK05122 17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGL------------VISLQYLATLLSRPHAGRYADTLGPKKAV 84 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH------------HHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence 44444455555555555556677655 458888876555 77777888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
+.+.++.+++.+............ ......+++..+..+.+.....+....+..|.+|++.|+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 150 (399)
T PRK05122 85 VFGLCGCALSGLLYLLAGLLAAWP--------------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVI 150 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccc--------------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccch
Confidence 998877666555443322100000 011122333333333333344445556678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHH
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGF 357 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (402)
++......+|..+++.+.+.+.+.. +|+..+++..++.++..
T Consensus 151 ~~~~~~~~~g~~~g~~l~~~l~~~~--g~~~~~~~~~~~~~~~~ 192 (399)
T PRK05122 151 SWNGIATYGALAIGAPLGVLLYHWG--GLAGLGLLIMLLALLGL 192 (399)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHH
Confidence 9998888889999999999888876 88887776555544433
No 142
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.40 E-value=3.5e-12 Score=121.64 Aligned_cols=151 Identities=17% Similarity=0.064 Sum_probs=106.9
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
......++.+++.++.|+++||+|||++++.+.++..++.+..+............ +......+++..++
T Consensus 60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~R~l 129 (479)
T PRK10077 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPD----------NTGYVPEFVIYRII 129 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccccccc----------chhHHHHHHHHHHH
Confidence 77778888999999999999999999999999888777766555421110000000 01222333444455
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh--------hcCCCchhhhHHHHHHHHHH
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ--------KGDKQIKQSIIALAVVNFLG 356 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 356 (402)
.+.+..+..+...++++|.+|++.|+.+.++.+....+|..+++.+...+.. .. +|+..|++.++..++.
T Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--gWr~~f~~~~~~~~~~ 207 (479)
T PRK10077 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD--GWRYMFASEAIPALLF 207 (479)
T ss_pred HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC--ChHHHHHHHHHHHHHH
Confidence 5555556666778889999999999999999999888888888766554431 22 8999999888777776
Q ss_pred HHHHhhcccCC
Q 042372 357 FLCSFMVPETN 367 (402)
Q Consensus 357 ~~~~~~l~et~ 367 (402)
.+..+++||+.
T Consensus 208 ~~~~~~l~~s~ 218 (479)
T PRK10077 208 LMLLYFVPETP 218 (479)
T ss_pred HHHHHcCCCCc
Confidence 66666678875
No 143
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.39 E-value=8.3e-12 Score=118.55 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=106.0
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
......++.+++.++.|+++||+|||+.+..+.++.+++.++...... ......++..++
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~~ 140 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--------------------GGIALVVFCRVI 140 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--------------------cCchHHHHHHHH
Confidence 777778888889999999999999999999888777766655433211 111234444455
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh-cCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK-GDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.+.+.....+....++.|.+|++.|+++.++......+|.++++.+.+.+.+. . +|+.+|++.+++.++..++.+++
T Consensus 141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~--gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWG--GWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCeehhhhhHHHHHHHHHHHHH
Confidence 55555666677778899999999999999999999999999999999988876 4 89999999888877766655544
No 144
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.38 E-value=6.2e-12 Score=116.07 Aligned_cols=160 Identities=15% Similarity=0.115 Sum_probs=118.7
Q ss_pred HHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 042372 172 INLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARY 251 (402)
Q Consensus 172 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 251 (402)
....+|.+.+++|.++.+.+. ......++..++.++.|+++||+|||+.+..+.++.+++.......
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~- 76 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQM------------TLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA- 76 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-
Confidence 334567778888888876554 6677778888889999999999999999999888877777766553
Q ss_pred ccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH
Q 042372 252 DSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV 331 (402)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~ 331 (402)
.+.+.. .+.....+.+.....+....+..|.+|++.|+++.++.+....+|..++|.+.
T Consensus 77 --------------------~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 135 (377)
T PRK11102 77 --------------------QTIDQL-IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG 135 (377)
T ss_pred --------------------ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 22222333333333445567789999999999999999999999999999999
Q ss_pred HHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 332 QYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
+.+.+.. +|+..|++.+++.++..++.. ++||++
T Consensus 136 ~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 136 GWLLVWF--SWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHc--ChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 9988877 899999888877777665554 457654
No 145
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.38 E-value=2.2e-11 Score=113.61 Aligned_cols=176 Identities=23% Similarity=0.218 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372 159 TSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
....++..........++|.+.+++|.+..+... ...+....+..+...++.++.|+++||+|||+.++.+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 92 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALN-------MWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 3344444555556667788888888877553210 022336667777888888899999999999999998887
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
+..++.+++... .+.+.+.+... ..+.+ .+..+....+..+.+|++.|+.+.++...
T Consensus 93 ~~~~~~~~~~~~---------------------~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (408)
T PRK09874 93 GMGIVMVLMGLA---------------------QNIWQFLILRA-LLGLL-GGFVPNANALIATQVPRNKSGWALGTLST 149 (408)
T ss_pred HHHHHHHHHHHH---------------------hhHHHHHHHHH-HHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence 777766655442 22222222222 22222 22344555667889999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccC
Q 042372 319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPET 366 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et 366 (402)
...+|.+++|.+.+.+.+.. +|+..|++.+++.++..+..++ +||.
T Consensus 150 ~~~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 150 GGVSGALLGPLAGGLLADSY--GLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999988776 8999999888877776665554 4554
No 146
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.38 E-value=1.4e-11 Score=114.44 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
.+....+.+....+++.++ ++.|++....++ ......+...+..++.|+++||+|||+.+..+..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl------------~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~ 86 (400)
T PRK11646 19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGI------------ALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH------------HHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence 3333444455555666555 558888886555 556666666777788999999999999999998888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.++.+..... ++.+.. .+.....+.+.....+...+++.|.+|++.|+++.|+.+...
T Consensus 87 ~~~~~~~~~~---------------------~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (400)
T PRK11646 87 AAGFATMAIA---------------------HEPWLL-WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQD 144 (400)
T ss_pred HHHHHHHHHh---------------------ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8877766543 222222 222333333233334455667789999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccC
Q 042372 321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPET 366 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et 366 (402)
.+|..++|.+.+.+.+ . +|+..|++.+++.++..++.. ++||.
T Consensus 145 ~~g~~ig~~l~g~l~~-~--g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 145 SAGAVIGALLGSWLLQ-Y--DFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHH-h--hHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999884 4 899999988777666554433 44653
No 147
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.38 E-value=5.5e-12 Score=119.68 Aligned_cols=179 Identities=14% Similarity=0.048 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
+...++.++.....-.......|.+.+++|.+..+.+. ..+...++..++.++.|+++||+|||+++.
T Consensus 31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~ 98 (467)
T PRK09556 31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGM------------IGLGFSITYGVGKTLVGYYADGKNTKQFLP 98 (467)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHhhhhhHhhccCccchHH
Confidence 33333333333333334445578888889998887555 666677777788889999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
.+.++.++..+.++....... .+. ...++.....+.+.....+....++.|.+|++.|+.+.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~g 161 (467)
T PRK09556 99 FLLILSAICMLGFGASLGSGS----------------VSL-GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLG 161 (467)
T ss_pred HHHHHHHHHHHHHHHHHhccc----------------chH-HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEE
Confidence 887777776666554321111 122 233333333334334445666778899999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhc-CCCchhhhHHHHHHHHHHHHHHhh
Q 042372 315 ISAAAGKAGAIVGAFGVQYYTQKG-DKQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
+......+|.++++.+..+..... ..+|+..|.+.+++.++..++.++
T Consensus 162 i~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 162 FWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred eeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999988876665532 115777787777766655444443
No 148
>PRK12382 putative transporter; Provisional
Probab=99.38 E-value=1e-11 Score=115.23 Aligned_cols=167 Identities=12% Similarity=-0.049 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372 158 TTSTWFLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG 236 (402)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~ 236 (402)
+.+..+............+|.++ +++|.+..+.+. ......++..++.++.|+++||+|||+.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~------------~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (392)
T PRK12382 20 IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGI------------AVGIQFLATVLTRGYAGRLADQYGAKRSALQG 87 (392)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHH------------HHHHHHHHHHHHhhhhhHHHHhhcchHHHHHH
Confidence 33333343334444445566554 568988886655 77778888888899999999999999999988
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372 237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
.+...++.+............ ......+.+.....+.+.....+...++..|.+|++.|+++.++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~ 153 (392)
T PRK12382 88 MLACGLAGLAYLLAAILPVSA--------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWN 153 (392)
T ss_pred HHHHHHHHHHHHhhhccccch--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHH
Confidence 766555543322221100000 112222333333333322223344455678999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHH
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVV 352 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (402)
.....++..++|.+.+.+.+.. +|+..+.+..+.
T Consensus 154 ~~~~~~g~~~g~~~~~~l~~~~--g~~~~~~~~~~~ 187 (392)
T PRK12382 154 GMAMYGALAAGAPLGLLLHSHF--GFAALALTTMVL 187 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHH
Confidence 9988999999999998887766 787665554443
No 149
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.38 E-value=6.8e-11 Score=112.70 Aligned_cols=133 Identities=11% Similarity=-0.014 Sum_probs=79.7
Q ss_pred chhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccc
Q 042372 217 YWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTT 296 (402)
Q Consensus 217 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (402)
....+++.+|.+..+.+.+++++.+++.+.+..........+ .-+.+ +.+....+.+.+.....|..
T Consensus 337 ~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~------------~vs~~-~~~~~~~l~~~ge~~~~p~g 403 (500)
T PRK09584 337 AAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAG------------IVSVN-WLIASYGLQSIGELMISGLG 403 (500)
T ss_pred HHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------ccCHH-HHHHHHHHHHHHHHHHhHHH
Confidence 334567777777777788888888888777665433211110 01222 33333444444556666778
Q ss_pred eeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh------hc--CCCchhhhHHHHHHHHHHHHHHhh
Q 042372 297 FIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ------KG--DKQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 297 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
..++.+..|++.||..+|+......+|..++..+...... .. ..++...|...++..++..++.+.
T Consensus 404 ~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 404 LAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999998877666666666555432210 00 002556777777666544444443
No 150
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.37 E-value=3.8e-13 Score=120.01 Aligned_cols=185 Identities=18% Similarity=0.112 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
....+++....+..--|.+....+..-+.++.++...++ +.....+...++++++|++.||+.||+++
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gl------------l~~vf~v~~~i~sPl~gyLadryNR~~v~ 101 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGL------------LQTVFIVVFMIASPLFGYLADRYNRKRVI 101 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccc------------hhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence 444555555555555566655555555567888886665 77888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
.+|..+-.++.+..++. ...+.++++..+.+.+-..+.++...+++|.+|...|+++.
T Consensus 102 ~vG~~iW~~Av~~~~fs----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~ 159 (493)
T KOG1330|consen 102 AVGIFIWTLAVFASGFS----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVL 159 (493)
T ss_pred eeHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHH
Confidence 99988888887777764 23345556666666667788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCCCCccc
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNGLSLEE 373 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~~~~~~ 373 (402)
++.+....+|..+|-.....+..... .|++.|.+.+++.++..++.++ .+|..++..++
T Consensus 160 ~ify~~ipvGsglG~vvgs~va~~~~-~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 160 GIFYFAIPVGSGLGYVVGSVVASLTF-WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred HHhhhhcccccceeEEeeeeeccCcc-ceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 99999999999998888888877774 5999999999999988777764 46665443333
No 151
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.37 E-value=2e-11 Score=112.18 Aligned_cols=177 Identities=19% Similarity=0.176 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh-hhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 156 LGTTSTWFLLDIAFYTINLTQKD-IYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
+..++..+......+....+.|. +.+++|+++.+.+. ......++..++.++.|+++||+|||+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 71 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGN------------LVAVPVLAGAVLRIILGFLVDKFGPRYTTT 71 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhH------------hhHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 34445555555666777777885 66679999886555 777778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
++.++..++.++..... .+. ....+..+..+.+. +..+....++.|.+|++.|+.+.+
T Consensus 72 ~~~~~~~i~~~~~~~~~--------------------~~~-~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~ 129 (366)
T TIGR00886 72 LSLLLLAIPCLWAGLAV--------------------QSY-SVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALG 129 (366)
T ss_pred HHHHHHHHHHHHHHHHh--------------------hhH-HHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHH
Confidence 99888888777665531 022 22222223333322 223345667899999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhc--------CCCchhhh-HHHHHHHHHHHHHHh-hcccC
Q 042372 315 ISAAAGKAGAIVGAFGVQYYTQKG--------DKQIKQSI-IALAVVNFLGFLCSF-MVPET 366 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~-~l~et 366 (402)
+......+|..+++.+.+.+.... ..+|+..+ +..+++.++..++.+ +.+|+
T Consensus 130 ~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 130 LAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 999888888888887776655421 11688888 443444444333333 34543
No 152
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.36 E-value=3e-11 Score=115.11 Aligned_cols=172 Identities=9% Similarity=-0.010 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc-cchh
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR-IGRF 230 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr-~grr 230 (402)
+.++..+...++....+|....+++.+++ ++|++..+... .............+++|+++|| +|||
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~------------~~~~~~~~~~~~~~~~G~LaDr~~G~r 88 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSIT------------LFSSFSALVYGLVAIGGWLGDKVLGTK 88 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 34566666777777888888888888885 48888775432 2222222222233478999999 5999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh--
Q 042372 231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL-- 308 (402)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-- 308 (402)
+.++++.++.+++..++.+.. ... ....+.....+.+.....+...++..|.+|++.
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~--------------------~~~-~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~ 147 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG--------------------HDA-GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR 147 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------------ccH-HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh
Confidence 999999888887766655421 111 122222222223233334455567899998643
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHH
Q 042372 309 RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLC 359 (402)
Q Consensus 309 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (402)
|..+.++.+...++|.+++|.+.+++.+.. +|+..|.+.++..+++.+.
T Consensus 148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~--g~~~~F~i~~i~~~i~~i~ 196 (500)
T PRK09584 148 LDGAFTMYYMSINIGSFFSMLATPWLAAKY--GWSVAFALSVVGMLITVVN 196 (500)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999877 8999999877655555443
No 153
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.36 E-value=3.6e-11 Score=106.68 Aligned_cols=293 Identities=15% Similarity=0.125 Sum_probs=177.9
Q ss_pred HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH-
Q 042372 7 VIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL- 85 (402)
Q Consensus 7 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~- 85 (402)
+++.+..++++-++..++-.....+|.++.-++.....-....+. .... -..-+..+...=|..+.+.++--++
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~---~~~~--l~~l~~~~~~~~ri~~~l~A~W~li~ 212 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTG---ITII--LLGLPPADGEDVRITGLLAALWWLLF 212 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccc---eeEE--eeccCccccccchhHHHHHHHHHHHH
Confidence 577888889888888887776777777766665433321110000 0000 0000011334567777776665444
Q ss_pred HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHH
Q 042372 86 TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLL 165 (402)
Q Consensus 86 ~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (402)
.+-++..+|+.++- .........+..+ ..++.+++...++ .+.......+..
T Consensus 213 ~iPm~~~v~~~~~~---~~~~~~~l~~g~k----------------------~L~~t~k~i~~~~---~i~~FLiA~~~~ 264 (438)
T COG2270 213 ALPMILNVHDAEKI---SSPPPTALRNGFK----------------------ELKSTFKEIRGRK---NLVLFLIARFFY 264 (438)
T ss_pred HhHHHhcccccccc---cccchHHHHHHHH----------------------HHHHHHHHHhccc---chHHHHHHHHHH
Confidence 44455556665431 0000000000000 0111112222222 222222233333
Q ss_pred HHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372 166 DIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM 244 (402)
Q Consensus 166 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~ 244 (402)
.=+..+...+...+.. ++|++..+..+ ......+..++|+++.|++.||+|.|+++.++.++..+..
T Consensus 265 ~DGv~til~~~~~fg~~~~gls~~~lll------------~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 265 IDGVNTILAMGGVFGAADLGLSSTELLL------------IGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred HhhHHHHHHHHHHHHHHHcCccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 3344555555566665 68998887554 6667778888999999999999999999888877666555
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372 245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA 324 (402)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~ 324 (402)
+...+... ..-..++.++.+.+..+..+..-+|..++.|++.-+...|+++..++...
T Consensus 333 ~~~~~~~~----------------------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S 390 (438)
T COG2270 333 LYLIFLEG----------------------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAAS 390 (438)
T ss_pred HHHHHccc----------------------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHH
Confidence 54443211 12233334444444566677888899999999999999999999999999
Q ss_pred HHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 325 IVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
++||+..+...+.++ +-+..+....++.+++.++.+.+|+.+
T Consensus 391 ~~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~L~~v~~~~ 432 (438)
T COG2270 391 FLGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLLLLRVKVPG 432 (438)
T ss_pred HHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhhEEeecCCC
Confidence 999999999999887 567777777777888888777776543
No 154
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.36 E-value=2.8e-11 Score=115.57 Aligned_cols=190 Identities=17% Similarity=0.075 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.++...+.++....-+....+..|.+-+++..+..... .............++..+|.++.|+++||+|||+++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 90 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSV------QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL 90 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 34444445555444444444555655555432221100 000111124566778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhH--HHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHA--WFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST 311 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 311 (402)
.++.++.+++.++.++...+.. -..+ ..+++..++.+.+..+..+....+++|.+|++.|+.
T Consensus 91 ~~~~~l~~i~~~~~a~~~~~~~----------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~ 154 (490)
T PRK10642 91 AITIVIMSISTFCIGLIPSYAT----------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF 154 (490)
T ss_pred HHHHHHHHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH
Confidence 9999998888887776422100 0000 123344445555555666677788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhh--------hcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 312 CHGISAAAGKAGAIVGAFGVQYYTQ--------KGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 312 ~~~~~~~~~~~g~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
..++......+|..+++.+...+.. .. +|+.+|++.+++.+++.++...+||+.
T Consensus 155 ~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~--gWR~~f~i~~~~~l~~~~~~~~~~esp 216 (490)
T PRK10642 155 MGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDW--GWRIPFFIALPLGIIGLYLRHALEETP 216 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCc--cHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 9999888777787777765544332 23 899999987665555554444567763
No 155
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.35 E-value=1.8e-11 Score=113.34 Aligned_cols=154 Identities=9% Similarity=0.048 Sum_probs=109.0
Q ss_pred HhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcc
Q 042372 174 LTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDS 253 (402)
Q Consensus 174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 253 (402)
...+.+..+.+.++...+. ......+...+..++.|+++||+|||++++++.++..++.+.+...
T Consensus 24 ~~~~~~~~~~~~s~~~~~~------------~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~--- 88 (393)
T PRK11195 24 FAAIALLKELHYPDWSQPL------------LQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG--- 88 (393)
T ss_pred HHHHHHHHHcCCcHHHHHH------------HHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH---
Confidence 3334455677776654433 5666677778888899999999999999999988777666554332
Q ss_pred ccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHH
Q 042372 254 LRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY 333 (402)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 333 (402)
.+. .+..+..+.+.....|...+++.|++|++.|+++.|+......++.++||.+.+.
T Consensus 89 ------------------~~~----~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 89 ------------------IHP----LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred ------------------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1222333444555567778889999999999999999999999999999999999
Q ss_pred HhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 334 YTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
+.+. .|...+.+.+.+.+++.+...++||.+
T Consensus 147 l~~~---~~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 147 LADP---HAEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9875 466666655555454544444567654
No 156
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.35 E-value=1.5e-11 Score=116.19 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=110.3
Q ss_pred HHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 042372 170 YTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGA 249 (402)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 249 (402)
+....+.|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+.++.+.++..++.+..++
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~------------~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 103 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAW------------ISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF 103 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHH------------HHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence 44566778888889988776554 444455555667778999999999999999888777776666554
Q ss_pred hhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHH
Q 042372 250 RYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAF 329 (402)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~ 329 (402)
. .+.+.......++.+.+.....+....++.+.+| +.|+++.++.+....+|..++|.
T Consensus 104 ~---------------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~ 161 (455)
T TIGR00892 104 S---------------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAP 161 (455)
T ss_pred h---------------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHH
Confidence 3 1112222222222222222222334456678886 78999999999999999999999
Q ss_pred hHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 330 GVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+.+.+.+.. +|+.+|++.+++.+++.+..+++
T Consensus 162 l~~~l~~~~--gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 162 LNQYLFESF--GWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHh
Confidence 999888877 89999999988877666555444
No 157
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.34 E-value=1.7e-11 Score=114.73 Aligned_cols=172 Identities=12% Similarity=-0.045 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372 165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~ 244 (402)
............|.+.++.+.++.+.+. ......++.+++.++.|+++||+|||+.+..+..+.+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~------------~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~ 96 (417)
T PRK10489 29 SIFGLGLLGVAVPVQIQMMTGSTLQVGL------------SVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGF 96 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHH------------HHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHH
Confidence 3334444555667777777777665444 7777788888889999999999999999888776666655
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372 245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA 324 (402)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~ 324 (402)
+.+....... . ++.+... +..+..+.+.....+....+..|.+|++.|+++.++.+....+|.
T Consensus 97 ~~~~~~~~~~--~--------------~~~~~l~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 159 (417)
T PRK10489 97 IGLALNAFLP--E--------------PSLLAIY-LLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGS 159 (417)
T ss_pred HHHHHHHHcC--C--------------CcHHHHH-HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHH
Confidence 5443321110 0 1222222 222222222222233445677899999999999999999999999
Q ss_pred HHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 325 IVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
.++|.+.+.+.+.. +|++.+++.++..++..+..+.+|+++
T Consensus 160 ~~g~~l~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 160 VISPALGGLLIAAG--GVAWNYGLAAAGTFITLLPLLRLPALP 200 (417)
T ss_pred HhHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999988766 788888887777776666666667653
No 158
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.34 E-value=6.7e-12 Score=115.62 Aligned_cols=159 Identities=15% Similarity=0.147 Sum_probs=112.7
Q ss_pred HHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 042372 168 AFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAIL 247 (402)
Q Consensus 168 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 247 (402)
..+....+.|.+.+++|.+..+.+. ......++..++.+..|.++||+|||+.+..+.++.+++.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~ 85 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGVGVTAVAI------------WFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY 85 (377)
T ss_pred HHhhhhhHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHH
Confidence 3556677788888899998886655 7778888889999999999999999999999988888877666
Q ss_pred HHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHH
Q 042372 248 GARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVG 327 (402)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~ 327 (402)
... .+.+.+.+... ..+.+.....+.......+.+| +.|+.+.++......+|..++
T Consensus 86 ~~~---------------------~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 142 (377)
T TIGR00890 86 AIA---------------------DSLAALYLTYG-LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFIL 142 (377)
T ss_pred HHH---------------------HHHHHHHHHHH-HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHH
Confidence 654 22222222222 2222222222233345567777 569999999998888888776
Q ss_pred HHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 328 AFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+.+.+...+.. +|+..|++.+++.++..+..+++
T Consensus 143 ~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 143 SPLITSVINLE--GVPAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred HHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666665554 89999999888877766655533
No 159
>PRK11043 putative transporter; Provisional
Probab=99.34 E-value=3.8e-11 Score=111.77 Aligned_cols=155 Identities=13% Similarity=0.053 Sum_probs=110.4
Q ss_pred HhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcccc
Q 042372 176 QKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLR 255 (402)
Q Consensus 176 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (402)
.|.+.++++.++.+.+. ......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 29 ~~~i~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----- 91 (401)
T PRK11043 29 FKAIQADLQTSASAVSA------------SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV----- 91 (401)
T ss_pred HHHHHHHHCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----
Confidence 34556678888876554 6777788888899999999999999999998877776666555442
Q ss_pred CCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372 256 GKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT 335 (402)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 335 (402)
.+.+.+.+. .+..+.+.....+....+..|.+|++.++...+.......++..++|.+.+.+.
T Consensus 92 ----------------~~~~~l~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 92 ----------------ESAAQLLVL-RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred ----------------cCHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 222222122222234456789999998898888888888899999999999998
Q ss_pred hhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372 336 QKGDKQIKQSIIALAVVNFLGFLCSFMVPET 366 (402)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et 366 (402)
+.. +|+..|++.+++.++..+..++++|.
T Consensus 155 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 155 NHF--GWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred hcC--ChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 877 89999998888777776666555443
No 160
>PRK09848 glucuronide transporter; Provisional
Probab=99.34 E-value=1.9e-10 Score=108.71 Aligned_cols=151 Identities=10% Similarity=-0.039 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 156 LGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
.......++....+.......|.++++ +|.++.. +........++.+++.++.+++.||+|+|+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~ 298 (448)
T PRK09848 231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFL 298 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 333333444444445555556766665 5544332 112333335566777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh-------
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR------- 307 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------- 307 (402)
++.++..++.+.+.+.. . .+.+. ........+.+.....+..+++.+|..|.+
T Consensus 299 ~g~~~~~i~~~~~~~~~-----~--------------~~~~~-~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r 358 (448)
T PRK09848 299 IGALLGTCGYLLFFWVS-----V--------------WSLPV-ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVR 358 (448)
T ss_pred HHHHHHHHHHHHHHHcC-----c--------------hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCcc
Confidence 88877666655444310 0 12222 222222222223333445666677777643
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372 308 LRSTCHGISAAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 308 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
.+|...|+.+....+|..+++.+.+.+.+..
T Consensus 359 ~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 359 IEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688999999999999999999988877654
No 161
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.34 E-value=1.7e-11 Score=111.67 Aligned_cols=168 Identities=18% Similarity=0.237 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 160 STWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
...+......+......|.+.++.+.++.+.+. ......++..++.++.|+++||+|||+.+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~ 73 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGL------------IVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLL 73 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHH
Confidence 334445555666677778888888888776554 67777888888999999999999999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
..++.+..... .+. ....+.....+.+.....+....+..|.+|++.|++..++.+..
T Consensus 74 ~~~~~~~~~~~---------------------~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (352)
T cd06174 74 FALGSLLLAFA---------------------SSL-WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG 131 (352)
T ss_pred HHHHHHHHHHh---------------------ccH-HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHH
Confidence 88777766553 111 23333333444444445566778889999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
..+|..+++.+.+.+.+.. +|+..+.+.+++.++..+...++
T Consensus 132 ~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
T cd06174 132 FGLGALLGPLLGGLLAESL--GWRWLFLILAILGLLLALLLLFL 173 (352)
T ss_pred HHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 78888888777776665554433
No 162
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.33 E-value=6.1e-11 Score=110.28 Aligned_cols=176 Identities=11% Similarity=-0.029 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
++.++..++...+.........|.+.++++.+..+.+. ..+...++.+++++..|++.||+|||+.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~------------l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~ 72 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAAL------------VQSAFYGGYFIMAIPAAIFMKKLSYKAGIL 72 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 44455555555555555556778888889998886555 778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
.+.++.+++.+++..... . .+. ...+...+..+.+.....+....+..+..|++.|++..+
T Consensus 73 ~g~~l~~~g~~l~~~~~~--~----------------~~~-~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 133 (410)
T TIGR00885 73 LGLFLYALGAFLFWPAAE--I----------------MNY-TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLN 133 (410)
T ss_pred HHHHHHHHHHHHHHHHHh--h----------------ccH-HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHH
Confidence 999888887766543211 0 122 222222222222222233344456678889999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcC------------------------CCchhhhHHHHHHHHHHHHHHh
Q 042372 315 ISAAAGKAGAIVGAFGVQYYTQKGD------------------------KQIKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 361 (402)
+.+....+|..++|.+.+.+..... .+|+.+|++.+++.++..++..
T Consensus 134 ~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~ 204 (410)
T TIGR00885 134 LAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM 204 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877743210 0588889888877666554443
No 163
>PRK15075 citrate-proton symporter; Provisional
Probab=99.32 E-value=5.3e-11 Score=111.92 Aligned_cols=176 Identities=14% Similarity=0.031 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.....++.++.............|.+.++++.++.+.+. ...+........+...++.++.|+++||+|||+.+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFAS------LMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH------HHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 455566666666667777778889888888877654321 00111122333444567788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
+.+..+.+++.++.++........ ......+++..+..+.+.....+....+.+|.+|++.|+++.
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIG--------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT 155 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHH--------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence 999988888877766542100000 000011223333333333333445567889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHh--------hhcCCCchhhhHHHHH
Q 042372 314 GISAAAGKAGAIVGAFGVQYYT--------QKGDKQIKQSIIALAV 351 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~ 351 (402)
++.....++|..+++.+.+.+. +.. +|+.+|++...
T Consensus 156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~--gWr~~f~~~~~ 199 (434)
T PRK15075 156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEW--GWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc--chHHHHHHHHH
Confidence 9999888888877777666543 233 89998886443
No 164
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.32 E-value=2.6e-10 Score=100.56 Aligned_cols=273 Identities=12% Similarity=0.035 Sum_probs=160.2
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLH-VYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
.+..|++...++++..+.+++.+...++|.+++|+++..+...-.. ..+++ -...........||.+|...+..
T Consensus 124 aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~-----~~~~~~~~~~~~v~~pYl~~~~~ 198 (422)
T COG0738 124 AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA-----QILAIKGADASSVQFPYLILAGL 198 (422)
T ss_pred ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH-----HHHHHHHHHHHhhhhHHHHHHHH
Confidence 4567889999999999999999999999999999999988741000 00000 00000000123488888776655
Q ss_pred HHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 83 AALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 83 ~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
.++..+.... +||-+. ...++ .+.++....+.++++ .+....+
T Consensus 199 lvll~v~~~~~k~p~~~~------~~~~~----------------------~~~~~~~~~~l~~~~-------~~~~gvl 243 (422)
T COG0738 199 LVLLAVLILLSKLPDLQV------AAPSL----------------------GASGSAGLSSLFQNK-------HLRLGVL 243 (422)
T ss_pred HHHHHHHHHhccCCcCCc------ccccc----------------------cccccchHHHHHhCh-------HHHHHHH
Confidence 5544433322 343211 00000 000000111222222 2233333
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
..++....-.....|++.++.+ .|.+..+... ..+..+.+.++|.+++.++..|+...+.+....++
T Consensus 244 ~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~------------~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~ 311 (422)
T COG0738 244 AIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAY------------YLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALI 311 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4444444455666778888887 6777665444 77888888999999999999999988888877665
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
..+.++...+. ++. ..+......+.+.....|+.++...+..|. . ....|.....
T Consensus 312 ~ill~~~~~l~---------------------~g~--v~~~~l~~ig~F~simfPTIfslal~~l~~-~-ts~~s~~l~m 366 (422)
T COG0738 312 AILLLLAVALI---------------------GGV--VALYALFLIGLFNSIMFPTIFSLALKNLGE-H-TSVGSGLLVM 366 (422)
T ss_pred HHHHHHHHHHh---------------------cCh--HHHHHHHHHHHHhHHHHHHHHHHHHhccCc-c-ccccceeeee
Confidence 55555555553 221 222222333344556678888888888883 3 2333344445
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHH
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFL 355 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (402)
..+|+++.|.+.|++.|.. +....+.....++.+
T Consensus 367 aivGGAiiP~l~G~i~d~~--g~~~~~~~~pllc~l 400 (422)
T COG0738 367 AIVGGAIIPPLQGVIADMF--GIQLTFLIVPLLCYL 400 (422)
T ss_pred heecchHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Confidence 5678999999999999987 444444433333333
No 165
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.32 E-value=1.6e-10 Score=106.24 Aligned_cols=168 Identities=13% Similarity=0.107 Sum_probs=105.4
Q ss_pred HHHHHHHhHhhhhhhcC-CchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH
Q 042372 168 AFYTINLTQKDIYPATG-IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI 246 (402)
Q Consensus 168 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 246 (402)
..-....|.+.++++.| .+.... +....+..++.++.....+++..|+|.|++++++.+..++=..+
T Consensus 222 ~~~~~~~f~~~yl~~~gg~~~~~~------------g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 222 SHAAYYTFFSIYLQELGGYSGSTI------------GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHHHHHHHHHHcccchhhHH------------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 33444556677888877 554432 22556777888898889999999999999999887666555555
Q ss_pred HHHhhccccCCCCCCCCCCCCccCCChhHHHH-HHHH-HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH-HHHH
Q 042372 247 LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFM-ILYG-LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA-GKAG 323 (402)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g 323 (402)
++.... +...... .... +.-+............|+.+..|++.|+++.++.+.. ..+|
T Consensus 290 ~a~~~~-------------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg 350 (400)
T PF03825_consen 290 YAYFSD-------------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLG 350 (400)
T ss_pred HHHhcC-------------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHH
Confidence 444210 1111111 1110 1111111112234556789999999999999998875 5689
Q ss_pred HHHHHHhHHHHhhhcCC----CchhhhHHHHHHHHHHHHHHhhc-ccC
Q 042372 324 AIVGAFGVQYYTQKGDK----QIKQSIIALAVVNFLGFLCSFMV-PET 366 (402)
Q Consensus 324 ~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l-~et 366 (402)
..+|.++.|++.+..+. .|...+.+.+++.++..++.+.+ +|+
T Consensus 351 ~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 351 GAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999998732 23344555555555555544433 544
No 166
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.32 E-value=9.1e-11 Score=106.16 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
++...+...+....|+......+.|+..+.-+..... ..-+...+...+..++...+.+++.+|+|.|+.++
T Consensus 222 fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~--------~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll 293 (412)
T PF01306_consen 222 FWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGN--------QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL 293 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCh--------hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH
Confidence 4444443444334455554445555554322222111 13344777788888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
++..++++=....++. ++.+....+ -.+-+.-........+-|+++.+|++..++...
T Consensus 294 lag~i~~iRi~~~~~~---------------------~~~~~i~~~-klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~ 351 (412)
T PF01306_consen 294 LAGVIMAIRIIGSGFA---------------------TNPWVISLI-KLLHALEFPLLLVAAFKYITAHFDKRLSATLYL 351 (412)
T ss_dssp HHHHHHHHHHHHHHT-----------------------SHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHH
T ss_pred HHHHHHHHHHHHHhhh---------------------cchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHH
Confidence 9987777766665553 222222222 221111111111234568899999999999888
Q ss_pred HH-HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372 315 IS-AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETN 367 (402)
Q Consensus 315 ~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~ 367 (402)
+. +....++.++.+.+.|.+.|.. |++.+|++++.+.++..++..+. ++.+
T Consensus 352 v~~~~~~~~~~~i~s~~~G~lyd~~--G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 352 VGFQFAKQIGIIILSPLAGYLYDRI--GFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHHHHHhhhHHhhHhhc--CcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 85 5778889999999999999998 88889999998888777777655 4433
No 167
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.31 E-value=5.9e-11 Score=110.49 Aligned_cols=166 Identities=13% Similarity=-0.017 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
+....+..+......+....+.+.+.+++|.+..+.+. ......++..++.++.|++.||+|||+.+.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~ 82 (402)
T TIGR00897 15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSAS------------AFTLYGIAAAISAWISGVVAEIIGPLKTMM 82 (402)
T ss_pred hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHH------------HHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 33334444444444444555667777888998886655 777788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
.+..+.+++.++...... .. .+. ....+.....+.+.....+....+..+.+|+++|+++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~--~~---------------~~~-~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g 144 (402)
T TIGR00897 83 IGLLLWCVGHAAFIVFGL--GH---------------ANY-PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVG 144 (402)
T ss_pred HHHHHHHHHHHHHHHHhc--cC---------------ccH-HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHH
Confidence 988877776554322110 00 112 222222222222222222334455678899999999999
Q ss_pred HHHHHHHHHH-HHHHHhHHHHhhhcCCCchhhhHHHHHH
Q 042372 315 ISAAAGKAGA-IVGAFGVQYYTQKGDKQIKQSIIALAVV 352 (402)
Q Consensus 315 ~~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (402)
+.+....+|. .++|.+.+.+.+.. +++..++.....
T Consensus 145 ~~~~~~~~g~~~~g~~~~~~l~~~~--g~~~~~~~~~~~ 181 (402)
T TIGR00897 145 WFWAVYSIGIGVFGSYYSSYAIPAF--GEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHH
Confidence 9999999886 57888888877665 655444443333
No 168
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1.9e-10 Score=96.25 Aligned_cols=174 Identities=10% Similarity=0.049 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII 232 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 232 (402)
.++.+....++.....+-+....|.++++ +|+|+..++- +.+.....+.+.+++.|.++||+|++..
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~------------i~s~vy~Isav~spvfg~i~Dk~G~n~~ 332 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGN------------ILSTVYGISAVLSPVFGAISDKYGFNLW 332 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccc------------hhhhhhhhhhhhhhhHHHhHhhhcceeh
Confidence 34444444444444445555556777765 8999886543 4444455566677889999999999977
Q ss_pred HHHHHHHHHH-HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372 233 QLGGFLLMSI-CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST 311 (402)
Q Consensus 233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 311 (402)
.+.+..+..+ +-..+.+.. .+++....++++...... ...|..++.+.|.+.-|+
T Consensus 333 wv~~a~~~tl~~H~~l~Ft~--------------------lsPy~~m~~lGLsysllA----cslWP~va~~vpE~qLGT 388 (459)
T KOG4686|consen 333 WVASACILTLLGHSGLFFTF--------------------LSPYTSMTFLGLSYSLLA----CSLWPCVASLVPEEQLGT 388 (459)
T ss_pred hHHHHHHHHHHHhhhHHhhh--------------------ccHHHHHHHHhhhHHHHH----HHHhhhhhhhCCHHHhcc
Confidence 6655433222 222222211 122222222222222211 235566688899999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCch---hhhHHHHHHHHHHHHHHhhcc
Q 042372 312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIK---QSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 364 (402)
+.|+++.++++|-.+.|.+.+.+.+..+ ++. ..|++...+++++..+.+.+.
T Consensus 389 aygf~qsIqNLgla~i~Iiag~i~d~~g-~y~~le~ffl~~~~~aL~svgil~~~N 443 (459)
T KOG4686|consen 389 AYGFIQSIQNLGLAFIPIIAGFIADGDG-SYDNLEAFFLIIGLMALTSVGILFYLN 443 (459)
T ss_pred hHHHHHHHHhhhhhHHhhhhheeecCCC-chhhHHHHHHHHHHHHHHHHHHHhhee
Confidence 9999999999999999999999988764 232 334444445555555555553
No 169
>PRK09952 shikimate transporter; Provisional
Probab=99.31 E-value=8.9e-11 Score=110.42 Aligned_cols=148 Identities=14% Similarity=0.036 Sum_probs=97.9
Q ss_pred HHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHH
Q 042372 206 FLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTL 285 (402)
Q Consensus 206 ~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (402)
.....++..+|.++.|+++||+|||+.++.+.++.+++.++.++...+.... .......++.....
T Consensus 70 ~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~R~l~ 135 (438)
T PRK09952 70 FGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIG--------------WWAPVLLVTLRAIQ 135 (438)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHH--------------HHHHHHHHHHHHHH
Confidence 3445577788889999999999999999999888888877776642210000 00011233334444
Q ss_pred HHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc------CCCchhhhHHHHHHHHHHHHH
Q 042372 286 FFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG------DKQIKQSIIALAVVNFLGFLC 359 (402)
Q Consensus 286 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 359 (402)
+.+..+..+....+..|.+|++.|+...+..+....+|..+++.+...+.... ..+|+.+|++.++..++...+
T Consensus 136 G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l 215 (438)
T PRK09952 136 GFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWV 215 (438)
T ss_pred HhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHH
Confidence 55455555666788899999999999998888888888888776665544211 118999998877665543333
Q ss_pred HhhcccCC
Q 042372 360 SFMVPETN 367 (402)
Q Consensus 360 ~~~l~et~ 367 (402)
...+||++
T Consensus 216 ~~~~~es~ 223 (438)
T PRK09952 216 RNGMEESA 223 (438)
T ss_pred HHhCCCCh
Confidence 22346653
No 170
>TIGR00898 2A0119 cation transport protein.
Probab=99.30 E-value=9.2e-12 Score=119.57 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=115.9
Q ss_pred HhHhhhhhhcCCc---hhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372 174 LTQKDIYPATGIV---RKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR 250 (402)
Q Consensus 174 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 250 (402)
.+.+.+.++++++ +.+.+. ..+...++.+++.++.|+++||+|||+.++++.++.+++.++..+.
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~------------~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~ 177 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDL------------TQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS 177 (505)
T ss_pred cccccEEEEecceechHHHHHH------------HHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc
Confidence 3456666777777 444333 7778888899999999999999999999999888777777666553
Q ss_pred hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHh
Q 042372 251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFG 330 (402)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~ 330 (402)
.+. ...++..++.+++..+..+...+++.|.+|++.|+.+.++......+|.++++.+
T Consensus 178 ---------------------~~~-~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 235 (505)
T TIGR00898 178 ---------------------PNY-TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLV 235 (505)
T ss_pred ---------------------ccH-HHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3333344444554555567788899999999999999999988888888888877
Q ss_pred HHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 331 VQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
...+. +|+..+++.++..++..+..+++||+.
T Consensus 236 ~~~~~-----~wr~~~~~~~i~~~~~~~~~~~~~esp 267 (505)
T TIGR00898 236 AYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESP 267 (505)
T ss_pred HHHhh-----HHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 65443 588999988888777777776778864
No 171
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.29 E-value=9.5e-11 Score=104.58 Aligned_cols=283 Identities=13% Similarity=0.027 Sum_probs=161.1
Q ss_pred HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhH--HHHHhhHHHH
Q 042372 7 VIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRI--VLMFGAVPAA 84 (402)
Q Consensus 7 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~--~f~~~~i~~~ 84 (402)
-+..-|+|+++|..+..+-.++..+|.+++.++...+...-. ..++..|-. +|+.....+.
T Consensus 163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~-----------------~~~~~~~~~~~~f~~~~~l~~ 225 (480)
T KOG2563|consen 163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSK-----------------DSEDNSWLFFTLFLGVECLAA 225 (480)
T ss_pred HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCC-----------------CcchhHHHHHHHHHHHHHHHH
Confidence 345668999999999999999999999999999888863110 124556765 3443333322
Q ss_pred H-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 85 L-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 85 ~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
+ ..+..+.-+|.|+. .....++..+ ..+..+..++-... +.++...+.+.
T Consensus 226 l~l~l~~~~~~~~P~t---Pps~s~~~~~-----------------------~~~f~~si~~~~~n---~~F~il~~~yg 276 (480)
T KOG2563|consen 226 LLLALVLFVFTKKPPT---PPSASQAALQ-----------------------DASFPKSIKSCFKN---RQFIILAICYG 276 (480)
T ss_pred HHHHHHHHhcCCCCCC---CCchhHhhhh-----------------------cCcHHHHHHHHHcC---ccHHHHHHHHh
Confidence 2 22222333333321 0000000000 00111111111111 24555555555
Q ss_pred HHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH-HHHHHHHHHHH
Q 042372 164 LLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI-IQLGGFLLMSI 242 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-~~~~~~~~~~~ 242 (402)
.....+++....+...+..-|++...+|. ......+++++++.++|.+.||.+.-+ .+++......+
T Consensus 277 i~~g~F~~l~~~l~~~l~~sgY~~~~aG~------------ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 277 IGLGLFNSLSTLLNLALCPSGYEGVFAGY------------IGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV 344 (480)
T ss_pred hhHHHHHHHHHHhhhccccccCCccccch------------hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 55566677766665444445666554444 777788888999999999999987643 44444433333
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA 322 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 322 (402)
+...+...... ....+.+.......+++..+..|+..-+..|..-|..-++..|+.+..+.+
T Consensus 345 ~~~~l~~~t~~------------------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~ 406 (480)
T KOG2563|consen 345 GTLMLLTCTLF------------------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQI 406 (480)
T ss_pred HHHHHHHhhcc------------------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhH
Confidence 32222221111 111123333444455557788888888888886556668888999999988
Q ss_pred HHHHHHHhHHHHhhhcCC-C-chhhhHHHHHHHHHHHHHHhhccc
Q 042372 323 GAIVGAFGVQYYTQKGDK-Q-IKQSIIALAVVNFLGFLCSFMVPE 365 (402)
Q Consensus 323 g~~i~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~e 365 (402)
.+++-.++-+...+..+. + +...-+.+....++..++..++++
T Consensus 407 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 407 FGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred HHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 888888777777765421 2 333334445555566666666643
No 172
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.27 E-value=2.3e-10 Score=101.61 Aligned_cols=175 Identities=15% Similarity=0.111 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
..+.............+......+.+-+++++|+.|.++ +..+..+...+..+..|++.||+|.|+..
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~l------------l~aiPil~GallRl~~g~l~drfGgR~~~ 82 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGL------------LVAIPILVGALLRLPYGFLTDRFGGRKWT 82 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHH------------HHHHHHHHhHHHHHHHHhhhcccCchHHH
Confidence 333333333333334444444455566779999998766 77778888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
..+.++..+-++.+++.... .+. +..+.+.++.+. ..+..++...++++.||++.+|.+.
T Consensus 83 ~~s~~l~~IP~~~~~~a~~~------------------~~~-~~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~Al 142 (417)
T COG2223 83 ILSMLLLLIPCLGLAFAVTY------------------PST-WQLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLAL 142 (417)
T ss_pred HHHHHHHHHHHHHHHHHccC------------------Cch-HHHHHHHHHHhc-ccceehcccccccccCChhhhhHHH
Confidence 99988877777776665331 111 233333333333 3444557778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCC---chhhhHHHHHHHHHHHHHHhhc
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQ---IKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 363 (402)
|+.. .+++|..+..++.+.+.... + |+.+..+..+..++..+..++.
T Consensus 143 GI~g-~GN~G~av~q~~~P~v~~~~--g~~~w~~~~~i~~~~l~v~~v~~~~~ 192 (417)
T COG2223 143 GIAG-AGNLGVAVAQLVAPLVAVAF--GFLAWRNVAGIYVVALAIAAVLAWLG 192 (417)
T ss_pred HHhc-cccccHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999988877 6 8888888888888877776654
No 173
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1e-11 Score=108.77 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=156.5
Q ss_pred chhHHhhhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 4 LSAVIMSEYANKRT-RGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 4 ~~~~~i~e~~~~~~-rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
++.++++|.+|+++ |++++|+.-.+.++|.++||.+|+.+. +..|.+.+|++.++.
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY-----------------------e~~Gk~aPFlVL~~v 235 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY-----------------------EFAGKSAPFLVLAIV 235 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH-----------------------hhcCCcCcHHHHHHH
Confidence 46788999998764 899999999999999999999999998 778899999999999
Q ss_pred HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
+++-..+.+++-|.-+ .+.++ .++....+++++.++. ........
T Consensus 236 ~Lld~~L~l~vi~p~~-----~~~~~------------------------~~~~~~~~~Ll~dP~I------~~~agai~ 280 (464)
T KOG3764|consen 236 LLLDGALQLLVIEPTE-----MDPDS------------------------TEQGTPMWSLLMDPYI------LLIAGAIT 280 (464)
T ss_pred HHHHHHHHHheeCccc-----cCccc------------------------cccCccHHHHHhCchH------hhhhcchh
Confidence 8887766666544211 11100 0112233333343321 11222222
Q ss_pred HHHHHHHHHHHHhHhh-hhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc--hhHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKD-IYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG--RFIIQLGGFLL 239 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~~~~~~~~ 239 (402)
++.....+ .--.++. ..+++.-+.-+.+. ......+...+++.+.|.+.||++ |-.....+.+.
T Consensus 281 ~~n~~laf-LePtlslwm~e~m~~p~w~~G~------------~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~ 347 (464)
T KOG3764|consen 281 FSNSSLAF-LEPTLSLWMLETMFTPGWEVGL------------AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLAT 347 (464)
T ss_pred hccchHHH-hCcccHHHHHHhccCCCcceee------------eecccccchhccCchHHHHHHhcCchhHHHHHHHHHH
Confidence 22111111 1111122 22334322213333 666677888899999999999999 43232333332
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh---hhhhhHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR---LRSTCHGIS 316 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~ 316 (402)
..+++....+...+ ...+......++..........|.. .+..|.-..+ .-|...++.
T Consensus 348 ~G~~~~~iP~~~~~------------------~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIa 408 (464)
T KOG3764|consen 348 VGVSSGPIPFATSI------------------AQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIA 408 (464)
T ss_pred HHHHhchhHhhhhH------------------HHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHH
Confidence 22222222221100 0111111122222222223333333 2333332223 457888999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.....+|.++||.+.+.+.+.. |+.+...+.++..++...++.++
T Consensus 409 d~a~sla~a~GP~~gg~iv~~i--GF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 409 DAAFSLAYAIGPTFGGSLVEAI--GFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHhhhccccccchheeeh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 88888888888888877666654
No 174
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.27 E-value=1.4e-10 Score=107.20 Aligned_cols=150 Identities=13% Similarity=-0.008 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.++.++...+...........+.|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~------------~~s~~~l~~~~~~~~~g~l~dr~g~k~~~ 74 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGV------------VSSSYFTGNLVGTLLAGYVIKRIGFNRSY 74 (381)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455555556666666667778889999999998876555 77778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
..+.++.+++....... ++.+.+. +..+..+.+.....+.......+..|++.|+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~---------------------~~~~~l~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (381)
T PRK03633 75 YLASLIFAAGCAGLGLM---------------------VGFWSWL-AWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLL 132 (381)
T ss_pred HHHHHHHHHHHHHHHHh---------------------ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99888877776665543 2222222 2333333323333333334456778888999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhh
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQK 337 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~ 337 (402)
+.......+|..+++.+.+.+.+.
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999887664
No 175
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.27 E-value=1.4e-10 Score=106.93 Aligned_cols=169 Identities=12% Similarity=0.018 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHH-HHHHH
Q 042372 163 FLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLG-GFLLM 240 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~-~~~~~ 240 (402)
+............+|.++ +++|.+..+.+. ......+...+..++.|.++||+|||+.++. +....
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~ 74 (375)
T TIGR00899 7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGL------------FYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLA 74 (375)
T ss_pred HHHHHHHHHHhhHHHHHHHcccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 333444444555566665 458888876554 5566667777778889999999999887654 43333
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh--HHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC--HGISAA 318 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~ 318 (402)
.++.++.... ++.+.. .+.....+.......+....+..|..|++.|+.+ .+....
T Consensus 75 ~~~~~~~~~~---------------------~~~~~l-~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (375)
T TIGR00899 75 ALACLLFAWN---------------------RNYFLL-LVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRA 132 (375)
T ss_pred HHHHHHHHhc---------------------chHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3333333332 222222 2222222222233445555566777777766644 577777
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCC
Q 042372 319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETN 367 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~ 367 (402)
...+|..++|.+.+.+.+.. +|+..|++.+++.++..++.++ +||.+
T Consensus 133 ~~~~g~~ig~~~~~~l~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 133 QISLAWVIGPPLAFWLALGF--GFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHhHHHHHhhhHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 78889999999999888776 8999999988887777666554 57654
No 176
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.26 E-value=1.8e-10 Score=109.78 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-----c
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-----G 228 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-----g 228 (402)
..+..+...+.++.........+|.++++.|.+..+.+. ...+. .. .++.++.+.++||+ |
T Consensus 13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~------------~~~~~-~~-~~~~~l~gpl~Dr~~~~~~G 78 (491)
T PRK11010 13 NSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGF------------FSLVG-QA-YVFKFLWSPLMDRYTPPFLG 78 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHH-HH-HHHHHHHHHHHHcccccCCC
Confidence 345555566666666667777788888888888766433 21111 11 14667899999999 9
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh
Q 042372 229 RFII-QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR 307 (402)
Q Consensus 229 rr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 307 (402)
||+. ++.+.+..+++...+++... . .+. .......+...++.....+...++..|.+|++
T Consensus 79 rrr~~ll~~~i~~~~~~~~~a~~~~----~--------------~~l-~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 79 RRRGWLLATQLLLLVAIAAMGFLEP----G--------------TQL-RWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCC----c--------------chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 9885 55665555555555444211 0 122 22222222233333444556677889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHhh-hcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 308 LRSTCHGISAAAGKAGAIVGAFGVQYYTQ-KGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 308 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
.|+.+.++......+|..+++.+..++.+ .. +|+..|++.+++.++..+..+++||+.
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~--GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYL--GWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999998888887 34 899999998888777766666667754
No 177
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.26 E-value=1.2e-10 Score=107.95 Aligned_cols=154 Identities=13% Similarity=0.043 Sum_probs=113.4
Q ss_pred HHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042372 169 FYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILG 248 (402)
Q Consensus 169 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 248 (402)
++.....+|.+.++++++..+.+. ..+...++..++.++.|+++||+|||+++..+..+.+++.+..+
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~------------~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~ 92 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAAL------------LTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRE 92 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 355667788888899999887655 67777778888889999999999999999999999999888877
Q ss_pred HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372 249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA 328 (402)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~ 328 (402)
+. ++.+.+ ++..++.+.+.....+....++.+.+| +.|+.+.++......+|..+++
T Consensus 93 ~a---------------------~~~~~l-l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~ 149 (393)
T PRK09705 93 LY---------------------PQSALL-LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGA 149 (393)
T ss_pred HC---------------------cchHHH-HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 64 222223 333333333333333445556788887 7799999999998889999999
Q ss_pred HhHHHHhhhcCCCchhhhHHHHHHHHHHHH
Q 042372 329 FGVQYYTQKGDKQIKQSIIALAVVNFLGFL 358 (402)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (402)
.+.+.+.++.. +|+..+.++++..++..+
T Consensus 150 ~~~~~l~~~~~-~w~~~~~~~~~~~~~~~~ 178 (393)
T PRK09705 150 AITPWLVQHSE-TWYQTLAWWALPAVVALF 178 (393)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 99988877643 688877766655544433
No 178
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.26 E-value=2.5e-10 Score=105.79 Aligned_cols=180 Identities=11% Similarity=0.032 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII 232 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 232 (402)
.++...+..+......+......+.+.+ +++++..+.+. ..++..+...++.+..|++.||+|.|++
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~------------l~ai~~l~~al~rip~G~l~Dr~G~R~v 102 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFL------------LTALPSVSGALLRVPYSFMVPIFGGRRW 102 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 4444444444444444444444555555 68899887655 5555566666677778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372 233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
+.++.++.++..+...+..... ...+...++...+.+.+ .+..+.....+++.+|++.||++
T Consensus 103 ~~~~~ll~~i~~~~~~~a~~~~-----------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A 164 (462)
T PRK15034 103 TVFSTAILIIPCVWLGIAVQNP-----------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSA 164 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHccc-----------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHH
Confidence 9998888777777666531100 11222333333333332 33445666778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHh-----hhcC-----------CCchhhhHHHHHHHHHHHHHHhhc
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYT-----QKGD-----------KQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.|+....+++|..+++++.+.+. ...+ .+++.+.++..++.++..++.++.
T Consensus 165 ~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 165 LGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998778888877766655433 2110 036666677777776666666654
No 179
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.24 E-value=3.3e-11 Score=104.98 Aligned_cols=113 Identities=14% Similarity=0.038 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHH
Q 042372 201 ISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMIL 280 (402)
Q Consensus 201 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (402)
.++.....+.+.+++.++..|.++||+|||.+++++....++...+.+.. ......+.
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S----------------------~~F~afv~ 126 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS----------------------RNFAAFVL 126 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHH
Confidence 45558888899999999999999999999999999988888776666653 22222222
Q ss_pred HHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh
Q 042372 281 YGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ 336 (402)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 336 (402)
..+..+. .-+...+..++++|+++++.|+.+++...+...+|.++||.+.+++..
T Consensus 127 aR~l~Gi-~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 127 ARFLGGI-FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHhhhh-ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 2333333 445556788899999999999999999999999999999999999887
No 180
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.23 E-value=6.3e-11 Score=92.60 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=96.4
Q ss_pred HHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHh
Q 042372 209 ALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFA 288 (402)
Q Consensus 209 ~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (402)
..++.+++.++.+++.||+|||+.+..+.....++.+..... .+.+.... .....+..
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~-~~~~~g~~ 64 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---------------------SNITVLII-ARFLQGFG 64 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHH-HHHHHHHH
Confidence 345566777789999999999999988877766666555442 11222222 22222222
Q ss_pred hcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-cc
Q 042372 289 NFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PE 365 (402)
Q Consensus 289 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e 365 (402)
.....+....+..|.+|++.|+++.++.+....++..+++.+.+.+.+.. +|+..+.+.+++.+++.+..+++ ||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 65 AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc--chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 33334566677899999999999999999999999999999999988766 78888888887777776666654 54
No 181
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.23 E-value=3.1e-10 Score=105.70 Aligned_cols=176 Identities=11% Similarity=0.029 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-----chhH-H
Q 042372 159 TSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-----GRFI-I 232 (402)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-----grr~-~ 232 (402)
+..++.++..+.....-+|.++++.|++..+.++ ....... .+..++.|+++||+ |||+ .
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~------------~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~ 70 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGF------------FSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGW 70 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHH--HHHHHHHHHHHHcccccCCCcchhH
Confidence 3455566666666777789999999999998664 2222222 35667899999999 7765 6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372 233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
++++.++.++++..+.+... . .+.+. +....+..........+...+++.|.+|+++|+.+
T Consensus 71 l~~~~~~~~l~~~~l~~~~~----~--------------~~~~~-l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~ 131 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCPP----H--------------AALWP-LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAG 131 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCc----c--------------chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHH
Confidence 66666666666665544311 0 12222 22222222333444556677888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCC
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNG 368 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~ 368 (402)
.++......+|..+++.+...+.+... +|+..|++.+++.++..+..+++||++.
T Consensus 132 ~~~~~~g~~~g~i~g~~l~~~l~~~~~-gw~~~f~i~a~~~l~~~l~~~~~~e~~~ 186 (402)
T PRK11902 132 AAVKVLGYRLAMLVSGGLALWLADRVL-GWGNTYLLMAGLMLAGALTTLWAPEPEV 186 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999889999999988888877422 8999999988877766665555676543
No 182
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.22 E-value=4.4e-10 Score=102.62 Aligned_cols=158 Identities=11% Similarity=0.009 Sum_probs=116.3
Q ss_pred HHHhHhhhhhhcCCchhh-hhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372 172 INLTQKDIYPATGIVRKA-AAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR 250 (402)
Q Consensus 172 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 250 (402)
..+..|.+.+++|++..+ .+. +......+..+..+.+|+++||+|-|+++.++.+..++..+++++.
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~------------I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa 112 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNE------------IIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG 112 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcch------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 344457777789999887 554 6667777777778889999999999999999988888888887774
Q ss_pred hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHh
Q 042372 251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFG 330 (402)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~ 330 (402)
.+ ...+.+.-++.+.+..+.. ....++...+|++.|+++.|+.+....+|.++++.+
T Consensus 113 ---------------------~S-l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L 169 (511)
T TIGR00806 113 ---------------------TS-VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVL 169 (511)
T ss_pred ---------------------HH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2333334444444444444 677788999999999999999999999999999999
Q ss_pred HHHHhhhcCCCchhh---hHHHHHHHHHHHHHHhhcccCC
Q 042372 331 VQYYTQKGDKQIKQS---IIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 331 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~et~ 367 (402)
.+++. .. +|+.. .++......+++++.+++|..+
T Consensus 170 ~qll~-s~--gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 170 GQLLV-TL--GWISYSTLNIISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHH-hc--CchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99844 34 66643 3344455556677777887433
No 183
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.22 E-value=9.1e-11 Score=108.29 Aligned_cols=145 Identities=16% Similarity=0.107 Sum_probs=103.3
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
...+..++.++|+++.++++||+|||..++++.++..++.++...... .....++++-.+.
T Consensus 65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-------------------~~~~e~li~GR~i 125 (485)
T KOG0569|consen 65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-------------------APSFEMLILGRLI 125 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-------------------hhhHHHHHHHHHH
Confidence 666778999999999999999999999998888777777666655433 1222233333333
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH-HHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV-QYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.+............|..|..|.+.||....+......+|..++..+. +.+.... +.|...+.+..+.+++..+...++
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~-~~W~~l~~~~~i~~~~~l~~l~~~ 204 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTE-DLWPYLLAFPLIPALLQLALLPFL 204 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCC-cchHHHHHHHHHHHHHHHHHHhcC
Confidence 33222222334556789999999999999999999888888885443 3343322 268888888888888888888889
Q ss_pred ccCCCC
Q 042372 364 PETNGL 369 (402)
Q Consensus 364 ~et~~~ 369 (402)
||+.+.
T Consensus 205 PESPk~ 210 (485)
T KOG0569|consen 205 PESPKY 210 (485)
T ss_pred CCCcch
Confidence 998654
No 184
>PRK10133 L-fucose transporter; Provisional
Probab=99.21 E-value=5.8e-10 Score=104.71 Aligned_cols=151 Identities=12% Similarity=-0.006 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.+..+..+++...+.........|.+.++++.++.+.+. ......++..++.++.|+++||+|||+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl------------~~~~~~~g~~i~~~~~g~l~dr~G~r~~l 94 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 445555666666667777888889988889998886655 77778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
..+..+.+++.+++..... . .+. ...++..+..+.+.....+....++.|..|.+.|....
T Consensus 95 ~~g~~~~~~~~~l~~~~~~--a----------------~~~-~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~ 155 (438)
T PRK10133 95 ITGLFLYALGAALFWPAAE--I----------------MNY-TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL 155 (438)
T ss_pred HHHHHHHHHHHHHHHHHHh--c----------------CCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHH
Confidence 9999888888766432111 0 122 22222233333322333334455567777777777778
Q ss_pred HHHHHHHHHHHHHHHHhHHHHh
Q 042372 314 GISAAAGKAGAIVGAFGVQYYT 335 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~ 335 (402)
++.+....+|..+++.+.+.+.
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998776543
No 185
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.21 E-value=1e-10 Score=114.09 Aligned_cols=184 Identities=10% Similarity=-0.001 Sum_probs=125.7
Q ss_pred HHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 042372 172 INLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARY 251 (402)
Q Consensus 172 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 251 (402)
.....+.+-+++++++.+.+. +.+...++.+++.++.+++.||.|||+.+.++.++++++.++++++.
T Consensus 52 ~~~~l~~iek~F~lss~~~G~------------i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 52 VNSSLTTIERRFKLSTSSSGL------------INGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHhhchhhhhhhCCCCCccee------------eeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 334456666778988887665 67777788888888999999999999999999999999988887764
Q ss_pred ccccCC------------------CCC-C---C-------CCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecc
Q 042372 252 DSLRGK------------------KCD-A---K-------KDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAE 302 (402)
Q Consensus 252 ~~~~~~------------------~~~-~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 302 (402)
.....- -+. + . .++..+..+...+..+++..++.+.+.....+...+++.|
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d 199 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD 199 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence 211000 000 0 0 0000000001123334445555566666667788899999
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCC--------------------CchhhhHHHHHHHHHHHHHHhh
Q 042372 303 LFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK--------------------QIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 303 ~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
.+|++.|+...++.+....+|..+|+.+.+.+.+...+ .|+..|++.+++.++..+..++
T Consensus 200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998887754210 2566677777777766655556
Q ss_pred cccCC
Q 042372 363 VPETN 367 (402)
Q Consensus 363 l~et~ 367 (402)
+|++.
T Consensus 280 ~p~~l 284 (633)
T TIGR00805 280 FPKAL 284 (633)
T ss_pred Ccccc
Confidence 66554
No 186
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.20 E-value=1.3e-10 Score=111.87 Aligned_cols=137 Identities=20% Similarity=0.240 Sum_probs=114.0
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
...+..++.++|+++.|.++||+|||++++++.++..++.+..++. ..+....++.++
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a----------------------~~~~~~~~~Rfl 180 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA----------------------PNYWMFLIFRFL 180 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh----------------------CcHHHHHHHHHH
Confidence 6777888999999999999999999999999999988888776664 334555566666
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
.+++..+...+.+.+.+|+++++.|+.+..+ ....+.++.+++...+++.. +|++.+++..+..++.+++.++.|
T Consensus 181 ~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~ 255 (521)
T KOG0255|consen 181 SGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPP 255 (521)
T ss_pred HHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccC
Confidence 6666777778889999999999999999999 88888899999999988887 899999998888887777744446
Q ss_pred cCCC
Q 042372 365 ETNG 368 (402)
Q Consensus 365 et~~ 368 (402)
|+++
T Consensus 256 Es~r 259 (521)
T KOG0255|consen 256 ESPR 259 (521)
T ss_pred cChH
Confidence 8754
No 187
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.18 E-value=4.4e-10 Score=105.34 Aligned_cols=175 Identities=9% Similarity=-0.071 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
++......++..........+.|.++++ +|++..+.+. ..+...++..++.++.|+++||+|||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~------------~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~ 79 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGI------------IFSANSLFALLFQPLYGLISDKLGLKKHL 79 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 4444445555555555666777777776 8999887665 78888888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhH-HHHHHHHHHHHHhhcCCcccceeeecccCc--hhhhh
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHA-WFMILYGLTLFFANFGPNSTTFIVPAELFP--ARLRS 310 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~ 310 (402)
+++..+.+++...+...... .... ...............+.. .......+..+ .+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 140 (420)
T PRK09528 80 LWIISGLLVLFGPFFIYVFA------------------PLLQYNILLGAIVGGIYLGFGFL-AGAGAIEAYIERVSRRSG 140 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhhhhhc-cchhhhhhHHHHHHhhcc
Confidence 87655444333221111000 0000 001101111111111111 11111122222 23456
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
...|.......+|..++|.+.+.+.+. +|+.+|++.+++.++..++.+++
T Consensus 141 ~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 141 FEYGRARMWGSLGWALCAFIAGILFNI---NPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred ccchhhHHhhhHHHHHHHHHHHHHHhc---CchHhHHHHHHHHHHHHHHHhcc
Confidence 677888888899999999999988764 78888888887777766666554
No 188
>PTZ00207 hypothetical protein; Provisional
Probab=99.17 E-value=1.8e-09 Score=102.97 Aligned_cols=182 Identities=16% Similarity=0.056 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhc-CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh--
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPAT-GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF-- 230 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr-- 230 (402)
.+|.++...++..........-+..+.+.+ |.+.... ......++..+++.+|.+..|++.....||
T Consensus 354 d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~----------~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~ 423 (591)
T PTZ00207 354 RLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA----------LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRA 423 (591)
T ss_pred hHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc----------ceeeehhhhhHHHHhhHHHHHHHHHHHHhhcc
Confidence 566666666665544444444455666666 6522210 011145666778888888888877322222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 042372 231 ------IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF 304 (402)
Q Consensus 231 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 304 (402)
++.+....++.++.+++.... +. ..+.+-.++.+++.....++....++|+|
T Consensus 424 ~~r~prt~~l~~~~~~~~~~lll~~~~--------------------p~--~~L~~~~~lvg~~~G~~~~~~~~i~selF 481 (591)
T PTZ00207 424 EDRVPITIALFIPSVCIITMLTLFLTL--------------------PK--AALPLPYFIAAFANGFMAATIALVTRTIF 481 (591)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHC--------------------Cc--cHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 222222222444444443321 10 11222222222223333446667779999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHH-HHhHHHHhhhcCC-----------CchhhhHHHHHHHHHHHHHHhhc-ccCCC
Q 042372 305 PARLRSTCHGISAAAGKAGAIVG-AFGVQYYTQKGDK-----------QIKQSIIALAVVNFLGFLCSFMV-PETNG 368 (402)
Q Consensus 305 p~~~r~~~~~~~~~~~~~g~~i~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l-~et~~ 368 (402)
. ++-|+-+.+.....-+|..+- -.+.|.++|.... =++.+|++++++++++.+....+ -+|++
T Consensus 482 g-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 482 A-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred c-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 9 777887777777777776654 4666777654321 14588999999999988887765 45543
No 189
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.17 E-value=7.8e-10 Score=102.51 Aligned_cols=146 Identities=19% Similarity=0.149 Sum_probs=97.0
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
......+...++.++.|+++||+|||+.++.+.++..++.++........... ........+....
T Consensus 40 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~r~l 105 (394)
T TIGR00883 40 TFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIG--------------IWAPILLLLARLI 105 (394)
T ss_pred HHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhH--------------HHHHHHHHHHHHH
Confidence 34445556667888999999999999999999888887776666542110000 0001122223333
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh--------hcCCCchhhhHHHHHHHHHH
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ--------KGDKQIKQSIIALAVVNFLG 356 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 356 (402)
.+.+.....+....++.|.+|++.|+...++.+....+|..+++.+...+.. .. +|+..|++.+++.+++
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~ 183 (394)
T TIGR00883 106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW--GWRIPFLVSAVLVLIG 183 (394)
T ss_pred HHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc--chHHHHHHHHHHHHHH
Confidence 3333344455666788999999999999999999999999998877665532 22 7888888777666655
Q ss_pred HHHHhhcccC
Q 042372 357 FLCSFMVPET 366 (402)
Q Consensus 357 ~~~~~~l~et 366 (402)
.++...+||+
T Consensus 184 ~~~~~~~~~~ 193 (394)
T TIGR00883 184 LYLRRNLEET 193 (394)
T ss_pred HHHHHhcCCC
Confidence 5444445554
No 190
>PTZ00207 hypothetical protein; Provisional
Probab=99.16 E-value=9.3e-10 Score=104.93 Aligned_cols=163 Identities=10% Similarity=0.088 Sum_probs=103.7
Q ss_pred HHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHH
Q 042372 166 DIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMA 245 (402)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 245 (402)
....|.+..+.+.+.+++|++..+.+. ...+..... .+.+..|++.||+|+|++++++.++.+++.+
T Consensus 40 ~g~~y~fsv~s~~L~~~lgls~~~l~~------------i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~l 106 (591)
T PTZ00207 40 TSFMYAFNLISGAMQARYNLTQRDLST------------ITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTL 106 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHH------------HHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 345677788889888889998876443 122211222 2344679999999999999999999998888
Q ss_pred HHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHH
Q 042372 246 ILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAI 325 (402)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~ 325 (402)
+.++...... . .+. +.+.++..+.+.+.....+.....+.+.|| +.||.+.|+......+|++
T Consensus 107 l~ala~~~~i-~--------------~s~-~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsa 169 (591)
T PTZ00207 107 LFALTFQEVI-E--------------GSV-VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSA 169 (591)
T ss_pred HHHHHhcccc-c--------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHH
Confidence 7776422100 0 122 222222223333333333344455678887 6799999999999999998
Q ss_pred HHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372 326 VGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 326 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (402)
+.+.+...+... +|+..|++.+++.++..++.+
T Consensus 170 I~~~l~~~l~~~---~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 170 ILGSIQLAFFSD---NTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred HHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Confidence 644444433332 677777777777776555554
No 191
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.15 E-value=5.9e-10 Score=102.06 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=105.4
Q ss_pred HHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-----chhHHH-HHHHHHHHHHHHH
Q 042372 173 NLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-----GRFIIQ-LGGFLLMSICMAI 246 (402)
Q Consensus 173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~ 246 (402)
....|.+.++.|++..+.+. .... .+...+ .++.|.++||+ |||+.+ +.+.++.+++...
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~------------~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~ 73 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGF------------FSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI 73 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHH------------HHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 34567888889999887554 2222 122222 56889999998 888875 4555555554444
Q ss_pred HHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHH
Q 042372 247 LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIV 326 (402)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i 326 (402)
+.+.. +. ... ..+....+..........+...+++.|.+|++.|+.+.++......+|.++
T Consensus 74 l~~~~----~~--------------~~l-~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~ 134 (356)
T TIGR00901 74 LSFLV----PS--------------TDL-PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLL 134 (356)
T ss_pred HHcCC----cc--------------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHH
Confidence 43321 11 111 222222222233333344566678899999999999999999999999999
Q ss_pred HHHhHHHHhhhcCCC--------chhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372 327 GAFGVQYYTQKGDKQ--------IKQSIIALAVVNFLGFLCSFMV-PETN 367 (402)
Q Consensus 327 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l-~et~ 367 (402)
++.+.+.+.... + |+..|++.+++.++..+..++. ||.+
T Consensus 135 ~~~l~~~l~~~~--g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 135 SGSLALVLASPE--FANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHHHHHHhhhc--ccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999998887766 5 9999999888877766665544 6643
No 192
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.2e-10 Score=102.23 Aligned_cols=138 Identities=19% Similarity=0.174 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHH
Q 042372 202 SKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILY 281 (402)
Q Consensus 202 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (402)
.++++....+.+++.+++.|.+.||+|+|..+++|+.++....+++++. +.+.+.++.
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg----------------------~sy~~l~vA 165 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG----------------------NSYPMLFVA 165 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc----------------------chhHHHHHH
Confidence 3448888899999999999999999999999999999999999988883 444566666
Q ss_pred HHHHHHhhcCCcccceeeecccCchhh-hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372 282 GLTLFFANFGPNSTTFIVPAELFPARL-RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS 360 (402)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (402)
..+.+.+.........++.++.||.+. |+.++|+.-.+..+|-.+||.+.+.+++.. |+..+|++.++++++...+-
T Consensus 166 R~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~--Gk~aPFlVL~~v~Lld~~L~ 243 (464)
T KOG3764|consen 166 RSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA--GKSAPFLVLAIVLLLDGALQ 243 (464)
T ss_pred HHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc--CCcCcHHHHHHHHHHHHHHH
Confidence 666666666666677788899999765 799999999999999999999999999998 89999999999999988888
Q ss_pred hhc
Q 042372 361 FMV 363 (402)
Q Consensus 361 ~~l 363 (402)
+++
T Consensus 244 l~v 246 (464)
T KOG3764|consen 244 LLV 246 (464)
T ss_pred Hhe
Confidence 776
No 193
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.14 E-value=2.1e-09 Score=100.40 Aligned_cols=194 Identities=13% Similarity=0.025 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc----ccchh
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID----RIGRF 230 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d----r~grr 230 (402)
++.+....++..+.+.....+.+.|++++|.+....+. ......+..++..++.|.++| |+|||
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~------------i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR 73 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASI------------IWLCGPLSGLLVQPLVGYLSDRCTSRFGRR 73 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHhHeeehhcCCCCCCCCh
Confidence 44555555555666666677777788889998875444 677777888888899999999 59999
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhH--HHHHHHHHHHHHhhcCCcccceeeecccCchh
Q 042372 231 IIQLGG-FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHA--WFMILYGLTLFFANFGPNSTTFIVPAELFPAR 307 (402)
Q Consensus 231 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 307 (402)
+.++.+ .....+++.++.........-..+.+ ...... ...++.....-+......+...++++|++|++
T Consensus 74 rp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~-------~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~ 146 (477)
T TIGR01301 74 RPFIAAGAALVAFAVILIGFAADIGHLFGDNLD-------KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGD 146 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhhcccccc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCch
Confidence 988775 44444444444332111000000000 001111 11111111111222223334567889999987
Q ss_pred hh--hhhHHHHHHHHHHHHHHHHHhHHHHh--hhc-----------CCCchhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372 308 LR--STCHGISAAAGKAGAIVGAFGVQYYT--QKG-----------DKQIKQSIIALAVVNFLGFLCSFMV-PETN 367 (402)
Q Consensus 308 ~r--~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l-~et~ 367 (402)
.| +.+.++.+....+|+++++.+.+... +.. ..+.+..|++.+++.+++.++..+. +|..
T Consensus 147 ~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 147 ARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 65 57889999999999999998887641 111 0145678888888777777776644 7754
No 194
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.14 E-value=1.1e-08 Score=91.21 Aligned_cols=273 Identities=15% Similarity=0.061 Sum_probs=149.1
Q ss_pred hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH--H
Q 042372 6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP--A 83 (402)
Q Consensus 6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~--~ 83 (402)
.++++|.+|+++|+++.++..+..-+|.+++.++.+.+.+ +...-|..-.+..+. .
T Consensus 111 lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~----------------------~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 111 LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD----------------------PFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc----------------------ccCHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999888762 111233333332222 2
Q ss_pred H-HHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372 84 A-LTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW 162 (402)
Q Consensus 84 ~-~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
+ +.++..+. .|.++. +... ..++++.+..+.+++-.-.++.+.+....+.
T Consensus 169 ~~l~~ia~wg-~E~r~~----~~~~-----------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l- 219 (403)
T PF03209_consen 169 LLLNLIALWG-QEPRRS----RRAA-----------------------AAERPRPPFREAWRQVWASPQARRFFVFLFL- 219 (403)
T ss_pred HHHHHHHHHh-cccCCc----cccc-----------------------CCCCCCccHHHHHHHHHhCCChhHHHHHHHH-
Confidence 2 22222222 232110 0000 0000111222222221111111222222211
Q ss_pred HHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc-ccchhHHHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID-RIGRFIIQLGGFLLM 240 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d-r~grr~~~~~~~~~~ 240 (402)
....++.-...+-.|-.+ +|++..+... ++.....+.++|....|++.. |.++++...+++.+.
T Consensus 220 --~t~a~~~QD~iLEPygg~Vfgmsv~eTT~------------Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~ 285 (403)
T PF03209_consen 220 --GTLAFFMQDVILEPYGGEVFGMSVGETTR------------LTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLG 285 (403)
T ss_pred --HHHHHHhhHHHcCCchhHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 222333333334344433 7888876554 666677777777777777666 677888888888877
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 320 (402)
.++..++........ . ......+.++++..+.+.. ...+...++.+++..|..+|.....+
T Consensus 286 ~~~f~lii~a~~~~~-~--------------~~~~~~~~l~G~g~G~f~v----gals~mM~lt~~~~aG~~mG~WGaaQ 346 (403)
T PF03209_consen 286 ALAFALIILAGPLGS-P--------------WLFRPGVFLLGLGNGLFTV----GALSLMMDLTSAGRAGLFMGAWGAAQ 346 (403)
T ss_pred HHHHHHHHHHHhccc-c--------------hHHHHHHHHHHHhhhHHHH----HHHHHHHhCCCCcchhHHHHHHHHHH
Confidence 777666555432111 1 1111112222222222222 22334567787888899999999999
Q ss_pred HHHHHHHHHhHHHHhhhcC--------CCchhhhHHHHHHHHHHHHHHhh
Q 042372 321 KAGAIVGAFGVQYYTQKGD--------KQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 321 ~~g~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
.+...++.++.+.+.|... .+|..+|.+-++..+++..+...
T Consensus 347 A~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 347 AIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888887765321 04556666666665555555443
No 195
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.13 E-value=1.7e-09 Score=98.79 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=57.1
Q ss_pred chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHH---hh
Q 042372 4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMF---GA 80 (402)
Q Consensus 4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~---~~ 80 (402)
+...++..|+|+++|+++.++..++..+|.+++++++.++ ..+|||..+.+ ..
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll------------------------~s~gWr~y~~Ln~Isl 189 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL------------------------VTLGWISYSTLNIISL 189 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhcCchhHHHHHHHHH
Confidence 5678999999999999999999999999999999999984 34578876655 33
Q ss_pred HHHHHHHHHHhhcCCCchh
Q 042372 81 VPAALTYYWRMKMPETARY 99 (402)
Q Consensus 81 i~~~~~~~~~~~lpesp~~ 99 (402)
....+.+++.+++|..++-
T Consensus 190 ~s~~~a~~~a~~LP~~~~s 208 (511)
T TIGR00806 190 VFMTFSVFLALFLKRPKRS 208 (511)
T ss_pred HHHHHHHHHHHhCCCCchh
Confidence 3444567777888855443
No 196
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.13 E-value=2.1e-09 Score=113.42 Aligned_cols=142 Identities=11% Similarity=-0.002 Sum_probs=96.9
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
..+...+..++.++++|.++||+|||+++.....+..+.......... ....+.+++..++
T Consensus 57 ~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-------------------~~s~~~l~~~~~l 117 (1140)
T PRK06814 57 AGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-------------------LNSVPLLFAALFL 117 (1140)
T ss_pred HHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-------------------HhhHHHHHHHHHH
Confidence 555667777788889999999999999764422222222111111110 1112334444444
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
.+.+.....+...+++.+++|++.|+.++|+.++...+|.++||.+.+++.... +|+..|+..+++.+++.++.+++|
T Consensus 118 ~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1140)
T PRK06814 118 MGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG--NFVILVALLMGIAVLGWLASLFIP 195 (1140)
T ss_pred HHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHhhCC
Confidence 455455566788889999999999999999999999999999999999998876 888888555555555555555666
Q ss_pred cCC
Q 042372 365 ETN 367 (402)
Q Consensus 365 et~ 367 (402)
+++
T Consensus 196 ~~~ 198 (1140)
T PRK06814 196 KTG 198 (1140)
T ss_pred CCC
Confidence 654
No 197
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.10 E-value=3.6e-09 Score=98.20 Aligned_cols=174 Identities=13% Similarity=0.025 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHH-HHHhhhcccchhhhhhccccchhHHHH
Q 042372 157 GTTSTWFLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFL-VALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
......+............+|.++ +++|.+..+.+. ... ...++.+.+.+.+++ .||+|||+.++
T Consensus 19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~ 85 (393)
T PRK15011 19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGF------------FFTGSAVIGILVSQFLAGR-SDKRGDRKSLI 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHH-HhcccchhHHH
Confidence 333334444445445555566655 458888876544 332 233344455555666 99999998754
Q ss_pred -HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh--h
Q 042372 235 -GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS--T 311 (402)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~ 311 (402)
.+.+..++...+..+. .+.+.+.+ .............+....+..+..+++.|. .
T Consensus 86 ~~~~~~~~~~~~~~~~~---------------------~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (393)
T PRK15011 86 VFCCLLGVLACTLFAWN---------------------RNYFVLLF-VGVFLSSFGSTANPQMFALAREHADKTGREAVM 143 (393)
T ss_pred HHHHHHHHHHHHHHHHh---------------------hHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHhhhccchHHH
Confidence 4444333444333332 22222222 222222222333445555556666655443 3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
..++.+....+|.+++|.+.+.+.+.. +|+..|++.++..++..+..+ ++||.+
T Consensus 144 ~~~~~~~~~~lg~~~g~~i~~~l~~~~--gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 144 FSSFLRAQVSLAWVIGPPLAYALAMGF--SFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 346778888899999999999998877 999999988877776665555 457654
No 198
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.09 E-value=1.7e-09 Score=100.51 Aligned_cols=178 Identities=11% Similarity=-0.089 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
++......++..........++|.++.+ +|.++.+.+. ......+...++.++.|+++||+|||+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~l~~~i~~~~~G~l~Dr~grr~~~ 71 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGI------------VFSCISLFSILFQPLFGLISDKLGLKKHL 71 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 4445445555555555666677777765 7888886555 77888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
+.+....+++.............. ........+..+..+.......+....+..+.. +.++...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~ 135 (396)
T TIGR00882 72 LWIISGLLVLFAPFFIYVFGPLLQ--------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEY 135 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH--------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhccccc
Confidence 877655544333221110000000 001111111122222222222333333333332 2234456
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+.....+.+|..++|.+.+.+.+. +|+.+|++.+++.++..++.+..
T Consensus 136 g~~~~~~~~g~~~g~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~ 182 (396)
T TIGR00882 136 GKARMFGCVGWALCASIAGILFSI---DPQIVFWLGSGFALILMLLLMFA 182 (396)
T ss_pred chhhhhcccHHHHHHHHHhhhhcc---CchHHHHHHHHHHHHHHHHHHHh
Confidence 777788889999999998887654 88999988887777766555544
No 199
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.08 E-value=4.2e-09 Score=111.38 Aligned_cols=116 Identities=12% Similarity=0.009 Sum_probs=85.1
Q ss_pred HHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH
Q 042372 203 KAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG 282 (402)
Q Consensus 203 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (402)
++..++..++.+++.+++|+++||+|||++++++.++.++..++..+... ......+++..
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~r 110 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY-------------------LGWFWLAFAVT 110 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-------------------HccHHHHHHHH
Confidence 33566677778888889999999999999998887665555444433221 11123333333
Q ss_pred HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372 283 LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK 337 (402)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 337 (402)
++.+.+.....+...+++.|.+|++.|+.++|+......+|.++++.+.+++...
T Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555567778899999999999999999999999999999999988765
No 200
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.07 E-value=5.9e-08 Score=91.14 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=52.4
Q ss_pred CchhHHhhhhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 3 PLSAVIMSEYANKR--TRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 3 ~~~~~~i~e~~~~~--~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
|...++++|.+|++ +|....++...+.++|..++|.+.+++. +..|||+.|.+++
T Consensus 119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~-----------------------~~~Gw~~~F~iaa 175 (493)
T PRK15462 119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ-----------------------EEYSWAMGFGLAA 175 (493)
T ss_pred ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH-----------------------hhhChHHHHHHHH
Confidence 45678999999876 7999999999999999999999999987 6678999999876
Q ss_pred HHHHHHHHH
Q 042372 81 VPAALTYYW 89 (402)
Q Consensus 81 i~~~~~~~~ 89 (402)
+..++.++.
T Consensus 176 igm~l~li~ 184 (493)
T PRK15462 176 VGMIAGLVI 184 (493)
T ss_pred HHHHHHHHH
Confidence 544444333
No 201
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.06 E-value=3.6e-09 Score=98.76 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=114.7
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
+......+.+++.+.+|++.||+|-|+++..+.++.+++.++..+... ... ..+++..++
T Consensus 78 i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-------------------~~~-~~~~~~R~l 137 (466)
T KOG2532|consen 78 IFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-------------------IGF-YLLLVLRFL 137 (466)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-------------------hcc-hhhHHHHHH
Confidence 777788888999999999999999999999999999988888777643 111 244555666
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh-cCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK-GDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.+.+.....|....+.+...|++.|++..++......+|.+++-.+.|.+.+. . ||+.+|++.+++.++..++.+++
T Consensus 138 qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~--GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 138 QGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSL--GWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCC--CCchHHHHHHHHHHHHHHHHHHH
Confidence 66666666778888899999999999999999999999999999999999887 5 99999999999988877776654
No 202
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.06 E-value=1.1e-09 Score=103.77 Aligned_cols=151 Identities=15% Similarity=0.068 Sum_probs=97.8
Q ss_pred HHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhc
Q 042372 173 NLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYD 252 (402)
Q Consensus 173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 252 (402)
...++.+..++|-++...- +.....++..++.++.|.++|.+|||..++.+.++..++.++.+...
T Consensus 64 a~~l~~I~~diG~~~~~~w-------------~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~- 129 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWSW-------------FSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ- 129 (599)
T ss_pred HHHHHHHHHhcCCCccchH-------------HHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-
Confidence 3344666677776544211 34445566677777899999999999999999998888888776541
Q ss_pred cccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHH
Q 042372 253 SLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQ 332 (402)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~ 332 (402)
+...++....+.+. +.+........++|+.|.+.|..+.++.....-....+++.+..
T Consensus 130 --------------------~~~~~iag~~l~Gv--gaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~ 187 (599)
T PF06609_consen 130 --------------------NMNTFIAGMVLYGV--GAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ 187 (599)
T ss_pred --------------------cHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence 22222222222221 12323334445799999999988877666554444445666655
Q ss_pred HHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372 333 YYTQKGDKQIKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (402)
.+.... +||+.|++.++...++++..+
T Consensus 188 ~~~~~~--~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 188 LFAAHS--GWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HhccCC--CcchHHHHHHHHHHHHHHHHH
Confidence 554433 899999999888777766554
No 203
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.05 E-value=2.6e-11 Score=115.26 Aligned_cols=314 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCc--ccccccccccCCCCC-c-chhHHHH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAP--AFNRNHVLSAQPQGD-Y-LWRIVLM 77 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-~Wr~~f~ 77 (402)
|+.+.+|+-|..++++-+.++|++.+...+|.++|.++++.+.+.+.+-...+ ..+.++ .... . .|..-|+
T Consensus 159 ~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p-----~dp~WvGAWWLGfl 233 (539)
T PF03137_consen 159 YTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP-----SDPRWVGAWWLGFL 233 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC-----CCccHHHHHHHHHH
Confidence 57788999999999999999999999999999999999998887543211110 000011 0111 1 3666666
Q ss_pred HhhHHHHHHHHHHhhcCCC-chhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHH
Q 042372 78 FGAVPAALTYYWRMKMPET-ARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLL 156 (402)
Q Consensus 78 ~~~i~~~~~~~~~~~lpes-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
+.++..++..+..++.|+. |.. ++.+++......+. ..+.+++..+.++.+......++.++....--+.+.++
T Consensus 234 i~g~~~~l~aipl~~FPk~lp~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~ 308 (539)
T PF03137_consen 234 ICGILLFLSAIPLFFFPKKLPGT----SERQEEKESSERKE-EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFM 308 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCccCCCc----ccccchhhhhhcch-hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHH
Confidence 6666666655555555544 221 00000000000000 00000000000000000111122222111001113556
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc--hhHHH
Q 042372 157 GTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG--RFIIQ 233 (402)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~~ 233 (402)
...+..........+...|.|.|++. ++.++..+.+ +...+...+.++|.+++|++..|+. .|..+
T Consensus 309 ~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~-----------l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~ 377 (539)
T PF03137_consen 309 CLILAGVFESFIVSGFATFLPKYLESQFGLSASQASL-----------LTGIVSIPGAALGILLGGYIVKKFKLSARGAA 377 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-----------HHhhhhcchhheehheEEEEEEEecCcHHHHH
Confidence 66666666667777888999999986 7887776443 1333444566788889999999984 33333
Q ss_pred HHHHHHHHHHHHH---HHHhh---cccc--CCCC------CCC----CCC-----------CCccCCCh----hHHHHHH
Q 042372 234 LGGFLLMSICMAI---LGARY---DSLR--GKKC------DAK----KDP-----------LHEYCDGN----HAWFMIL 280 (402)
Q Consensus 234 ~~~~~~~~~~~~~---~~~~~---~~~~--~~~~------~~~----~~~-----------~~~~~~~~----~~~~~~~ 280 (402)
....+...++.+. ..+.. .... +... ... .++ ..+.++.. .+.++++
T Consensus 378 ~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~ 457 (539)
T PF03137_consen 378 KFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLIL 457 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHH
Confidence 3333322222222 11110 0000 0000 000 000 12223222 2233333
Q ss_pred HHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH-HHHHHHHhHHHHhhh
Q 042372 281 YGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA-GAIVGAFGVQYYTQK 337 (402)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~ 337 (402)
..+..+.......| ....+-..+|++.|+.+.|+...+.++ |.+-+|.++|.+.|.
T Consensus 458 ~~~~~~~~~~~~~p-~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 458 LFILSFFTFMSQVP-STLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHhcccc-hheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 33333333333333 334456778999999999999988766 667889999998885
No 204
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.05 E-value=3.6e-09 Score=100.47 Aligned_cols=140 Identities=14% Similarity=0.053 Sum_probs=101.2
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
......+-.++.++++|.++||+.||++++.+-++..+..+++.+..... ....+.++++.+.
T Consensus 50 v~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~-----------------~~~~~~Ll~~~fl 112 (524)
T PF05977_consen 50 VQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFG-----------------LLSPWLLLILTFL 112 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhC-----------------cCCHHHHHHHHHH
Confidence 55555566666777899999999999999998887776655555443211 1122333444444
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.+.+.....|...+++.|++|++....++++.+...++..++||.+.|.+.... |...+|.+-++..++..+.....
T Consensus 113 ~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~--G~~~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 113 LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF--GAAAAFLINALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHc
Confidence 444445556777888899999999999999999999999999999999988876 66777877776666655544444
No 205
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.05 E-value=2e-09 Score=98.57 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=100.4
Q ss_pred HHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 042372 172 INLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARY 251 (402)
Q Consensus 172 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 251 (402)
....+|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+.+.++.++..++.+.. ..
T Consensus 19 ~~~~lp~l~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~- 84 (355)
T TIGR00896 19 VGPLLPQIRSALGMSFSVAGL------------LTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA- 84 (355)
T ss_pred CcccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-
Confidence 445678888889999887655 7778888888999999999999999999998876655554433 11
Q ss_pred ccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH
Q 042372 252 DSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV 331 (402)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~ 331 (402)
.+.+.+ .+..+..+.+.....+....++.|.+| +.|+.+.++.+....+|..+++.+.
T Consensus 85 --------------------~~~~~l-~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 85 --------------------PGTALL-FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred --------------------ccHHHH-HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 222222222222222233345577776 5799999999999999999999888
Q ss_pred HHHhhhcCCCchhhhHHHHHHHHH
Q 042372 332 QYYTQKGDKQIKQSIIALAVVNFL 355 (402)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~ 355 (402)
+.+.+..+.+|+..|.+.+++.++
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHH
Confidence 887765422488887766655443
No 206
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.05 E-value=7.6e-09 Score=95.67 Aligned_cols=160 Identities=9% Similarity=-0.042 Sum_probs=100.8
Q ss_pred HHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH----HHHHHHHHHHH
Q 042372 167 IAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI----IQLGGFLLMSI 242 (402)
Q Consensus 167 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~----~~~~~~~~~~~ 242 (402)
........++|.++++.|.+..+.+. ......+...++.++.|.++||+|||. .+.+.. .+
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG~------------~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~---~~ 82 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIGL------------LLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLT---LL 82 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHHH------------HHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHH---HH
Confidence 34455566778889999999887665 677778888888899999999999842 222221 11
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA 322 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 322 (402)
....+... . ++. +.+.+.....+.+.....+...++..+. .+.|+.+.+.....+.+
T Consensus 83 ~~~~~~~~----~----------------~~~-~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~l 139 (382)
T PRK11128 83 FAVAFWFG----A----------------HSF-WLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSI 139 (382)
T ss_pred HHHHHHHh----c----------------ccH-HHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHH
Confidence 11111110 0 122 2222223322333333444444444444 35578888889999999
Q ss_pred HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372 323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPET 366 (402)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et 366 (402)
|..++|.+.+.+.+.. +|+..|++.++..++..+...+.||.
T Consensus 140 g~~igp~lgg~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 140 AFVIGSALTGKLVSWF--GEQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred HHHHHHHHHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999887 89999887776555544433334544
No 207
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.02 E-value=1.4e-08 Score=93.95 Aligned_cols=156 Identities=18% Similarity=0.062 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 240 (402)
..+.....+.....++|.++++.|++..+.+. ......+...++.++.+.++||+||+..........
T Consensus 12 ~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~------------~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 79 (382)
T TIGR00902 12 GFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGL------------LIGAALIARFAGGLFFAPLIKDANHIIIALRLLALA 79 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34444444445566788999999999887665 666777778888889999999999854332221111
Q ss_pred H-HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 241 S-ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 241 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
. +..+.+... . ++.+...+...+ ...+.....+...++..+ +.+.|+...|.....
T Consensus 80 ~~l~~~~~~~~----~----------------~~~~~l~~~~~l-~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~ 136 (382)
T TIGR00902 80 SAIFAAAFSAG----A----------------HNAWLLFIAIGL-FALFFSAGMPIGDALANT--WQKQFGLDYGKVRLI 136 (382)
T ss_pred HHHHHHHHHHh----h----------------hhHHHHHHHHHH-HHHHHccchhHHHHHHHH--HHHHcCCCccHHHHH
Confidence 1 111111111 0 222223233222 222233344555555444 256789999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN 353 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (402)
..+|.+++|.+.+.+.+.. +|+..|.+.....
T Consensus 137 ~slG~~~g~~l~g~l~~~~--g~~~~f~~~~~~~ 168 (382)
T TIGR00902 137 GSAAFIIGSALFGGLIGMF--DEQNILAILTAGL 168 (382)
T ss_pred HHHHHHHHHHHHHHHHHHc--ChhHHHHHHHHHH
Confidence 9999999999999999987 8998888766543
No 208
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.02 E-value=1.6e-11 Score=116.19 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=106.9
Q ss_pred HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372 204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL 283 (402)
Q Consensus 204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (402)
.......++.++|+++.|+++||+|||+.++.+.++..++.++..+.... .....+.+..+
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------~~~~~~~~~R~ 110 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-------------------NNFWMLLIGRF 110 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc-------------------ccccccccccc
Confidence 36777889999999999999999999999999988888777776664210 01233333444
Q ss_pred HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC-CCchhhhHHHHHHHHHHHHHHhh
Q 042372 284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD-KQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
+.+++..+..+....++.|..|++.|+...++.+....+|..++..+........+ ..|+..+.+.++..++..+..++
T Consensus 111 ~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~ 190 (451)
T PF00083_consen 111 LIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFF 190 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44554555666788899999999999999999988888887777765543322221 15888888888888777776667
Q ss_pred cccCCC
Q 042372 363 VPETNG 368 (402)
Q Consensus 363 l~et~~ 368 (402)
+||+..
T Consensus 191 ~pESP~ 196 (451)
T PF00083_consen 191 LPESPR 196 (451)
T ss_pred cccccc
Confidence 799743
No 209
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.98 E-value=3.8e-08 Score=91.53 Aligned_cols=259 Identities=12% Similarity=0.055 Sum_probs=151.9
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
..+.+|++|.+..++|....++.......+..++|.+++.+. ...|.-.+|.+..+.
T Consensus 131 s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~-----------------------~~~~~a~~f~ia~~~ 187 (463)
T KOG2816|consen 131 SVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV-----------------------KFLGIALVFLIAAAS 187 (463)
T ss_pred hhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------------------HhcCchHHHHHHHHH
Confidence 456789999999999999999999999999999999999987 445677788887777
Q ss_pred HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++ .+..++++||+-. +++++++ ... ... ..+..........+...+ .++.+..+.+.+.
T Consensus 188 ~~~~~~y~~~~l~Esl~-----~~~~~~~--~~~---~~~------~~~~~~~~~~~~~~~~~~---~~~~r~~l~l~l~ 248 (463)
T KOG2816|consen 188 GILSLLYMLLFLPESLQ-----EKERSDA--TLR---ELT------PGSLDSSHVADAFQSLTK---VGPDRLLLLLLLV 248 (463)
T ss_pred HHHHHHHHhhccccccC-----ccccccc--ccc---ccC------CCcccchhhhhhhhhhcc---cCCCccchHHHHH
Confidence 666 4556778999832 1111110 000 000 000000001111111111 1111233333333
Q ss_pred HHHHHHHHHHHHH-hHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhh-hhhccccchhHHHHHHHH
Q 042372 162 WFLLDIAFYTINL-TQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFT-VFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-g~l~dr~grr~~~~~~~~ 238 (402)
.+........-.. ..+.++. .++++..+.+. ......+...++.++. +.+...+|-|+....|..
T Consensus 249 ~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~------------~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~ 316 (463)
T KOG2816|consen 249 AFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSD------------LLSLVSILGIISQLLLLPLLSSILGEKRLISLGLL 316 (463)
T ss_pred HHHHHHHHhcCceeEEEEEEeeecCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHH
Confidence 3222211111111 2233443 37888887554 3333333333444444 478888898888888877
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
...+.....++.. ..+.... ..... .......+...+..+-...++.+|++.++...
T Consensus 317 ~~~~~~~~~af~~---------------------~~w~~~~-~~v~~-~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~ 373 (463)
T KOG2816|consen 317 SEFLQLLLFAFAT---------------------ETWMMFA-AGVVV-ALAGIVFPAIRAFASILVSPEEQGKVFGIISG 373 (463)
T ss_pred HHHHHHHHHHHhc---------------------cchhhhH-HHHHH-HhhcchhHHHHhHHHhhcccccccchhhHHHH
Confidence 7777777766642 2222221 11111 12334445666677888889999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhc
Q 042372 319 AGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~ 338 (402)
+..+.+.++|.+.+.+...+
T Consensus 374 i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 374 IEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHHhhhhhHHHHHHHHHHH
Confidence 99999999998888776543
No 210
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.94 E-value=7.1e-09 Score=94.37 Aligned_cols=178 Identities=13% Similarity=0.007 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cC----CchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TG----IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI 227 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~ 227 (402)
+.+..++..-+.--+.||++...+..|+.. .+ ++++++.. ....+....-+..+++|+++||+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~------------l~~~y~slVY~t~i~GG~laDr~ 88 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATG------------LFSAYGSLVYLTPIIGGWLADRV 88 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHH------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777778889887777666653 44 77665332 22222222333455789999995
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch
Q 042372 228 -GRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA 306 (402)
Q Consensus 228 -grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 306 (402)
|+|+.++.|.+++.++.++++.... .....+.+. ......+....=+....+..|++|+
T Consensus 89 LG~~~tI~lGail~~iGh~~L~~~~~-------------------~~~~gl~i~-L~~I~iG~Gl~K~NiS~llg~ly~~ 148 (498)
T COG3104 89 LGTRRTIVLGAILMAIGHLVLAISSV-------------------SGPGGLYIG-LALIIVGTGLFKPNISSLLGELYPK 148 (498)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccc-------------------ccccHHHHH-HHHHHhccccccccHHHHHHHhcCC
Confidence 9999999999999999988877520 011122222 2222233344445666778899875
Q ss_pred --hhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 307 --RLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 307 --~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
.+|..+.++.++..++|++++|.+.+++.+.. +|...|...++-..++++..+..+
T Consensus 149 ~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~--g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 149 DDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY--GWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred CCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33788889999999999999999999999988 899999999888888888777654
No 211
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.93 E-value=4.5e-08 Score=90.83 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhh-hhhccccchhHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFT-VFLIDRIGRFIIQ 233 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-g~l~dr~grr~~~ 233 (402)
...+...++.++..+.....+.|.++++.|.+..+.+. .+ ......+..++..++. ++..||+|||+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl--------~~--~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~ 72 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAF--------LP--LVGLPWVVKFLWAPLVDNWWSWRLGRRRSW 72 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH--------HH--HHHHHHHHHHHHHHHHhccccccCCcchhH
Confidence 44566677788888888888999999999999887554 10 1234456666666666 5578999999887
Q ss_pred HHHHHHH-HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372 234 LGGFLLM-SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
++...+. ..+...+.... .. . ....+.... .....+......+..-.+..|..+.+.++..
T Consensus 73 i~~~~~~~~~~~~~~~~~~--~~-~--------------~~~~~~~~~-~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~ 134 (390)
T TIGR02718 73 VLPMQCLVSACLASLALVG--PD-V--------------AGAGWAVGL-LACASLASATQDIATDGMAAEHFNGRTLAKG 134 (390)
T ss_pred HHHHHHHHHHHHHHHHcCC--cc-h--------------hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHhhhhHH
Confidence 5554322 21222222111 11 1 111122222 2222222333333444456777777777877
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhccc
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPE 365 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 365 (402)
.+.......+|..+++...+++.+.. +|+.+|++.+++.++..+..++++|
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~--gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKF--GQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777777888888888888888877 9999999999888777766665543
No 212
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.93 E-value=4.9e-08 Score=92.06 Aligned_cols=171 Identities=16% Similarity=0.100 Sum_probs=102.7
Q ss_pred HHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhH-HHHHHHHHHHH
Q 042372 169 FYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFI-IQLGGFLLMSI 242 (402)
Q Consensus 169 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~-~~~~~~~~~~~ 242 (402)
......|++.++. .+|.++...+. ...+..+...+..++.|.++|| +|||+ .++.+....++
T Consensus 15 ~~~~~~~l~~~~~~~~g~s~~~~g~------------i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i 82 (437)
T TIGR00792 15 FAIVSTYLLFFYTDVLGLSAAFVGT------------LFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSI 82 (437)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHH------------HHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHH
Confidence 3344444555554 58988886555 7888888999999999999998 67755 55566555555
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhhhHHHHHHHHH
Q 042372 243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRSTCHGISAAAGK 321 (402)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~ 321 (402)
+.+++...... .. ...........+....+.........++..|+. +++.|+...++.+....
T Consensus 83 ~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~ 146 (437)
T TIGR00792 83 VLVLLFTTPDF--SA--------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGAT 146 (437)
T ss_pred HHHHHHhCCCC--Cc--------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHH
Confidence 55544332110 00 111112221112222212222223445667876 56889999999888888
Q ss_pred HHHHHHHHhHHHHhhhcC-----CCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372 322 AGAIVGAFGVQYYTQKGD-----KQIKQSIIALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~l~et~ 367 (402)
+|..+++.+.+.+....+ .+|+..+.+.+++.++..++.+ ..||++
T Consensus 147 ~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 147 LGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 888877766555543211 1788888888877777666554 346654
No 213
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.93 E-value=1.3e-08 Score=97.71 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=106.9
Q ss_pred HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372 204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL 283 (402)
Q Consensus 204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (402)
.......++..+|.++.|+++|++|||+.++.+.+...++.++.+... ....+.+..+
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----------------------~~~~l~~GR~ 150 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP----------------------SWYQLIVGRI 150 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHH
Confidence 377778889999999999999999999999999999898888887752 2234444444
Q ss_pred HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+.+++..+...+...|.+|+.|++.||...+..+....+|..++ ++.+........+|+..+.+..+.+++..+..+++
T Consensus 151 l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~ 229 (513)
T KOG0254|consen 151 LTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFL 229 (513)
T ss_pred HhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444444445667889999999999999999999988777777 44444443211179988888888888877776667
Q ss_pred ccCCC
Q 042372 364 PETNG 368 (402)
Q Consensus 364 ~et~~ 368 (402)
||+.+
T Consensus 230 pesp~ 234 (513)
T KOG0254|consen 230 PESPR 234 (513)
T ss_pred CCChH
Confidence 88754
No 214
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.90 E-value=5.7e-09 Score=93.48 Aligned_cols=155 Identities=18% Similarity=0.138 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHH
Q 042372 201 ISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMIL 280 (402)
Q Consensus 201 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (402)
..+.......++.+.|.++.|++.||+|||+++...++++.++.++.+........ ....+.+..
T Consensus 85 i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~---------------~~~m~~L~~ 149 (538)
T KOG0252|consen 85 VLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSP---------------LGVMMTLCF 149 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCC---------------cchhhHHHH
Confidence 34447888889999999999999999999999999988888888755543221111 233445556
Q ss_pred HHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHH---hhh-cCC---------CchhhhH
Q 042372 281 YGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYY---TQK-GDK---------QIKQSII 347 (402)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~---~~~-~~~---------~~~~~~~ 347 (402)
+....+.+..+-+|...++++|....+.||.-.+.....+..|...|..+...+ .+. .+. -||..+.
T Consensus 150 ~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~g 229 (538)
T KOG0252|consen 150 FRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFG 229 (538)
T ss_pred HHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHH
Confidence 666777777888899999999999999999988877777666655554433332 221 110 3666666
Q ss_pred HHHHHHHHHHHHHhhcccCCCCC
Q 042372 348 ALAVVNFLGFLCSFMVPETNGLS 370 (402)
Q Consensus 348 ~~~~~~~~~~~~~~~l~et~~~~ 370 (402)
+.++..++....-+.+|||+..+
T Consensus 230 lg~vpa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 230 LGAVPALLVLYFRLKMPETARYT 252 (538)
T ss_pred HHHHHHHHHHHhhhcCCcchhHH
Confidence 66666555555555669987654
No 215
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.86 E-value=5.3e-08 Score=82.66 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372 165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~ 244 (402)
.....|.+..|.|.+-+++|++.++... +.....++..+| +..|.+.|++|.+.++++|.+...++.
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~------------l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGYSQSQLNT------------LSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred hcCcccchhhhhHHHHHHhCCCHHHHHH------------HHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3346778889999999999999887554 555556666654 678999999999999999998888887
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372 245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA 324 (402)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~ 324 (402)
..+......... ....+...++....+.+.............+.|| +.||++.|+.-....+++
T Consensus 81 ~~~~l~~~~~i~---------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSa 144 (250)
T PF06813_consen 81 GLLWLAVSGRIP---------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSA 144 (250)
T ss_pred HHHHHHHhCccC---------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHH
Confidence 776665432211 1122233333222222222222333344567888 579999999999999888
Q ss_pred HHHHHhHHHHhhhcCCCchhhhHHHHHH-HHHHHHHHhhcc
Q 042372 325 IVGAFGVQYYTQKGDKQIKQSIIALAVV-NFLGFLCSFMVP 364 (402)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 364 (402)
.+-..+...+.+. +....+.+.+.. .+++++..++++
T Consensus 145 ai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 145 AIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHhhhee
Confidence 8777766666554 222333333333 344444445553
No 216
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.86 E-value=1.3e-07 Score=83.82 Aligned_cols=178 Identities=13% Similarity=0.035 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
.++.+...++..++.........|.+.+.+..+..+++. .......+..+.++..+++.+|+|+|+-+
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~l------------iqfaff~gYf~~~lpa~~~~kk~gyk~gi 81 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASL------------IQFAFFGGYFIMSLPAGLLIKKLGYKAGI 81 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHH------------HHHHHHHHHHHHhccHHHHHHHhhhHHHH
Confidence 344455555555555556666778887778888776555 66777777778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH 313 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 313 (402)
+.+..+.++++.++.-... ...+...+...+..+.+..........+++.+.|++..+.-.
T Consensus 82 ~lgL~l~avg~~lF~pAa~-------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rl 142 (422)
T COG0738 82 VLGLLLYAVGAALFWPAAS-------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRL 142 (422)
T ss_pred HHHHHHHHHHHHHHhhhhh-------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHH
Confidence 9999999998887753321 122222222222222222233345556778888888788889
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhc-----------------CCCchhhhHHHHHHHHHHHHHHhh
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKG-----------------DKQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
.+.+.++.+|++++|.+.+.+.... -..++.++..++...++..+....
T Consensus 143 nl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 143 NLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988877620 004667777777666665555443
No 217
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.85 E-value=2.5e-08 Score=94.32 Aligned_cols=173 Identities=10% Similarity=0.073 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
....++.........+....+.+.+.++++.+..+.++ ...+.........++.+.+.||+|.|.+.+
T Consensus 48 ~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~------------i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i 115 (509)
T KOG2504|consen 48 VFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAW------------IGSLLLGVYLLAGPLVSALCNRFGCRTVMI 115 (509)
T ss_pred eHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHH------------HHHHHHHHHHHhccHHHHHHhhcCchHHHH
Confidence 33333333333334444455667777777777775443 555555556666778999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
.|.++.++++++..+. .+.+.+.+.+.+..+.+.........+.+.. +..+.|+.+.|
T Consensus 116 ~G~~v~~~g~~lssF~---------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~-YF~kkR~lA~G 173 (509)
T KOG2504|consen 116 AGGLVAALGLLLSSFA---------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGT-YFEKKRALATG 173 (509)
T ss_pred HHHHHHHHHHHHHHHH---------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhh-HhHHHHHHHHh
Confidence 9999999998887775 4444555555555544333333233334444 45577999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 315 ISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+......+|.++-|.+.-.+.+.. ||+..+++++.+.+-..+....+
T Consensus 174 ia~~GsG~G~~~~~~l~~~l~~~~--G~r~~~l~~~~~~l~~~~~~~~~ 220 (509)
T KOG2504|consen 174 IAVSGTGVGTVVFPPLLKYLLSKY--GWRGALLIFGGISLNVLVAGALL 220 (509)
T ss_pred hhhccCCcceeeHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999988888888888887 99999999998887777666655
No 218
>PRK09669 putative symporter YagG; Provisional
Probab=98.78 E-value=3.5e-07 Score=86.43 Aligned_cols=174 Identities=17% Similarity=0.182 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhH-HHHHHHH
Q 042372 165 LDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFI-IQLGGFL 238 (402)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~-~~~~~~~ 238 (402)
.+..+.....|++.|+.+ +|++....+. ...+..+...+..++.|.++|| +|||+ .++++.+
T Consensus 21 ~~~~~~~~~~~l~~~~t~~~gls~~~~g~------------i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~ 88 (444)
T PRK09669 21 CNLVWQTVMLFLAYFYTDVFGLSAAIMGT------------MFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI 88 (444)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH
Confidence 333344445555656555 8998886555 7888888889999999999998 67754 4555655
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhhhHHHHH
Q 042372 239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRSTCHGISA 317 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~ 317 (402)
..+++.+++..... .... ....+..+...+...... .......++.+|+. +++.|.+..+...
T Consensus 89 ~~~i~~~l~f~~p~-~~~~--------------~~~~~~~~~~~l~~~~~t-~~~ip~~al~~~~t~~~~eR~~l~~~r~ 152 (444)
T PRK09669 89 PFGVVCLLTFYTPD-FGAT--------------GKIIYACVTYILLSLVYT-AINVPYCAMPGAITNDPRERHSLQSWRF 152 (444)
T ss_pred HHHHHHHHHHhCCC-CCcc--------------hHHHHHHHHHHHHHHHHH-hhcchHHHhHHHhcCCHHHHHHHHHHHH
Confidence 55555443322110 0000 112222222222222222 23333446678877 4577998888888
Q ss_pred HHHHHHHHHHHHhHHHHhhhcC-----CCchhhhHHHHHHHHHHHHHHhhc-ccC
Q 042372 318 AAGKAGAIVGAFGVQYYTQKGD-----KQIKQSIIALAVVNFLGFLCSFMV-PET 366 (402)
Q Consensus 318 ~~~~~g~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l-~et 366 (402)
....+|+.+++.+...+....+ .+|+..+.+.+++.++..+..++. +|.
T Consensus 153 ~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 153 ALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 8888888887765544443321 156666666666666655554443 553
No 219
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.72 E-value=3.4e-07 Score=80.04 Aligned_cols=139 Identities=17% Similarity=0.067 Sum_probs=97.5
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
+......+..+++...|.++|++|||+.+...++..++..++-... .+..++.+ +-.+
T Consensus 118 lt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s---------------------pnf~~L~~-f~~l 175 (528)
T KOG0253|consen 118 LTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS---------------------PNFASLCV-FRAL 175 (528)
T ss_pred HHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC---------------------CCeehhhH-HHHH
Confidence 6666778889999999999999999999887766555444433321 12222222 2222
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
.++ +.+..|...++-.|..|...|...+-+. ....+|.++...+.-...... ||++.+....+...+.+.+++++|
T Consensus 176 ~~~-g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~--gwr~~l~~~~~pl~~~a~f~~w~~ 251 (528)
T KOG0253|consen 176 WGF-GVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF--GWRYLLFTSSTPLMFAARFLVWVY 251 (528)
T ss_pred Hhc-cCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhHHHHHHHHHhhcc
Confidence 233 3333667777779999999998876665 777778888777776666666 899888888877777888888888
Q ss_pred cCCCC
Q 042372 365 ETNGL 369 (402)
Q Consensus 365 et~~~ 369 (402)
|..+-
T Consensus 252 ESpRf 256 (528)
T KOG0253|consen 252 ESPRF 256 (528)
T ss_pred cCcch
Confidence 87554
No 220
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.70 E-value=5e-07 Score=84.86 Aligned_cols=142 Identities=15% Similarity=0.047 Sum_probs=100.0
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
...+..++.+++.+.++.+.||++-.+.+....+..++..++.... .+. ...+..-++
T Consensus 86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~---------------------~s~-~~~ialr~l 143 (495)
T KOG2533|consen 86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV---------------------HSF-PGLIALRFL 143 (495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH---------------------hhh-HHHHHHHHH
Confidence 5666677777888889999999995555554433333222222221 122 333444445
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC----CCchhhhHHHHHHHHHHHHHH
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD----KQIKQSIIALAVVNFLGFLCS 360 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 360 (402)
.+.+..+..|....++...+.++.|+..+|+.++...+|+++|+++...+.+..+ .+|++.|++-+++.++..++.
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence 5555677778888899999999999999999999999999999988877543111 199999999999988877666
Q ss_pred h-hcccCCC
Q 042372 361 F-MVPETNG 368 (402)
Q Consensus 361 ~-~l~et~~ 368 (402)
+ ++|+...
T Consensus 224 f~~lp~~P~ 232 (495)
T KOG2533|consen 224 FFFLPDNPS 232 (495)
T ss_pred EEEecCChh
Confidence 6 4576544
No 221
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.65 E-value=1.1e-06 Score=83.66 Aligned_cols=177 Identities=16% Similarity=0.065 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc----ccchh-HHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID----RIGRF-IIQL 234 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d----r~grr-~~~~ 234 (402)
..+.....+.....|++.|+.+ .|+++...+. +..+..+...+..++.|.++| |+||| +.++
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~------------i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il 81 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGT------------LFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL 81 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence 3334444555556666767666 6998876554 777788888889999999999 56884 5555
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCCh-hHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhhh
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGN-HAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRSTC 312 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~ 312 (402)
++.+..+++.+++.... .... .. ..+..+.+.+. ..+.........++..|+. .++.|...
T Consensus 82 ~g~i~~~i~~~llf~~p--~~~~--------------~~~~~~~~~~~~l~-~~~~t~~~ip~~al~~~lt~~~~eR~~l 144 (473)
T PRK10429 82 IGTLANSVVLFLLFSAH--LFEG--------------TAQYVFVCVTYILW-GMTYTIMDIPFWSLVPTLTLDKREREQL 144 (473)
T ss_pred hhhHHHHHHHHHHHcCC--CCCc--------------cHHHHHHHHHHHHH-HHHHHHHcchHHhhhHHhCCCHHHHHHH
Confidence 56555555544332210 0000 11 11222222222 2222222334456678888 57889998
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCC-----CchhhhHHHHHHHHHHHHHHhh-cccC
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYTQKGDK-----QIKQSIIALAVVNFLGFLCSFM-VPET 366 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~et 366 (402)
.+.-.....+|+.+.+.+...+....+. +|.....+.+++.+++.+..++ .+|.
T Consensus 145 ~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 145 VPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 8887777777766665554433222210 3444445555555544444443 3553
No 222
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.64 E-value=3.8e-07 Score=84.12 Aligned_cols=187 Identities=11% Similarity=0.007 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch
Q 042372 152 GLHLLGTTSTWFLLDIAFYTINLTQKDIYPA--TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR 229 (402)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr 229 (402)
||.++...+..+.....+.....-.-.|.++ .+-+.+..| +..+...++.+++++..|+...|.+.
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG------------~viaa~slg~~i~~liF~~Ws~k~~~ 100 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFG------------LVIAASSLGHAIFSLIFGIWSNKTGS 100 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhh------------HHHHHHHHHHHhcchhhcccccccCC
Confidence 3455555555555444333222222234444 333333333 36666889999999999999999986
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh
Q 042372 230 -FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL 308 (402)
Q Consensus 230 -r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 308 (402)
|+.++.+.+++.++.++.....+.. ++. ..+++..-+..+.+.+.....-.|+++..-.+.
T Consensus 101 ~k~Pli~s~ii~~~g~llY~~l~~~~-----------------~~~-~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~d 162 (488)
T KOG2325|consen 101 VKKPLIVSFLIAIIGNLLYLALAYVP-----------------NGV-KYLMLVARILTGVGVGNFAVLRAYIADASTVED 162 (488)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhcc-----------------cch-HHHHHHHHHHcCcCcccHHHHHHHHHhccCccc
Confidence 7777889988888888774433211 112 223333333333344555677788888777788
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCC-----------CchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372 309 RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK-----------QIKQSIIALAVVNFLGFLCSFM-VPETNG 368 (402)
Q Consensus 309 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-l~et~~ 368 (402)
|.++++.......+|.++||.+-..+...... -+..+-++++++.++.+++.++ ++|...
T Consensus 163 R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 163 RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 88888888877777888888655444332111 3456778888888887777664 466543
No 223
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.64 E-value=4.6e-07 Score=85.15 Aligned_cols=171 Identities=18% Similarity=0.177 Sum_probs=104.7
Q ss_pred HHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc----ccchhHHHH-HHHHHHH
Q 042372 168 AFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID----RIGRFIIQL-GGFLLMS 241 (402)
Q Consensus 168 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d----r~grr~~~~-~~~~~~~ 241 (402)
.......|++.++.+ .|+++...+. ...+..+...+..++.|.++| |+|||+..+ ++....+
T Consensus 16 ~~~~~~~~~~~f~~~~~gl~~~~~g~------------i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~ 83 (428)
T PF13347_consen 16 IWSLLSSYLLYFYTDVLGLSPALAGL------------ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLA 83 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHH
Confidence 333344455555544 7888875444 777778888888899999999 789776554 5655555
Q ss_pred HHHHHHHHhhc-cccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-hhhhhhhHHHHHHH
Q 042372 242 ICMAILGARYD-SLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-ARLRSTCHGISAAA 319 (402)
Q Consensus 242 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~ 319 (402)
++.+++..... ..... ....+..+...++ ..+.........++..|+.+ ++.|....+.....
T Consensus 84 ~~~~llf~~~p~~~~~~--------------~~~~~~~~~~~l~-~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~ 148 (428)
T PF13347_consen 84 LSFFLLFSPPPAGLSFT--------------AKLVWLFVFYILF-DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIF 148 (428)
T ss_pred HHHHHhhccccchhhhh--------------hHHHHHHHHHHHH-HHhhhhccCchhhcCccccccHhhhhhHHHHHHHH
Confidence 55554443200 00000 1111222222222 22233334445677899987 46899999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCC-----CchhhhHHHHHHHHHHHHHHhhc-cc
Q 042372 320 GKAGAIVGAFGVQYYTQKGDK-----QIKQSIIALAVVNFLGFLCSFMV-PE 365 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l-~e 365 (402)
..+|..+...+.+.+.+..+. +|+....+.+++.+++.++..+. +|
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 998887777777766654432 46666777777766666665544 66
No 224
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.60 E-value=1.7e-07 Score=86.33 Aligned_cols=308 Identities=14% Similarity=0.080 Sum_probs=148.6
Q ss_pred hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372 5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA 84 (402)
Q Consensus 5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~ 84 (402)
.-+|+++.+..++|.++.+....+..+|.++||.++..+.......+.-. . .....-+-.+-|+.++..+
T Consensus 150 lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~---------~-~~~~n~YTap~w~m~i~~i 219 (488)
T KOG2325|consen 150 LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMIL---------P-GLIFNMYTAPAWLMAILWI 219 (488)
T ss_pred HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEc---------C-cceEEecchHHHHHHHHHH
Confidence 34789999999999999999999999999999999888874432211000 0 0011123445667777766
Q ss_pred HHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372 85 LTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF 163 (402)
Q Consensus 85 ~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
+.+ ++.++++|.++--..++.+.++ ++..+. +..+.+ +-.+...+.+.+..+
T Consensus 220 ~~~v~i~~~f~E~~~~~~~~~~~~~~--------------~~~~~~-----------~~~~~~--~~d~~~~~vc~~~~~ 272 (488)
T KOG2325|consen 220 IYIVIILFFFKEVYRGIIDKKKRSVE--------------EEKSDI-----------EKVKKP--KLDWVAVLVCIFLRF 272 (488)
T ss_pred HHHHHHHhheeecccCccccccccch--------------hhccch-----------hhhccC--ChhHHHHHHHHHHHH
Confidence 644 4455678865431111000000 000000 000111 111234455555555
Q ss_pred HHHHHHHH-HHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-cccchhHHHHHHHHHHH
Q 042372 164 LLDIAFYT-INLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLI-DRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~~~~~~~~~~ 241 (402)
...+.+.. .....+.....+++...++.. ..+....+.++....-.+...+.. -++.+|..++.++++..
T Consensus 273 ~~~~~~~~iet~~~~~~m~~y~w~~~~av~--------~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f 344 (488)
T KOG2325|consen 273 VVNFIATTIETLSSALTMVMYGWTGSEAVL--------YNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFF 344 (488)
T ss_pred HHHHHHHHHHhccchHHHHHhccccchHHH--------hhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHH
Confidence 55555554 333444444457777665433 222233333332222222222222 23334555555544333
Q ss_pred HHHHHHHHhhccccCCCCCC----CCC--CCCccCCChhHH--HHHHHHHHHHHhhcCC--cccceeeecccCchhhhhh
Q 042372 242 ICMAILGARYDSLRGKKCDA----KKD--PLHEYCDGNHAW--FMILYGLTLFFANFGP--NSTTFIVPAELFPARLRST 311 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~e~~p~~~r~~ 311 (402)
.+..+...+..+...+-... ... ..-.+++..... ...+......++...+ .....++-+|+..++.+++
T Consensus 345 ~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~ 424 (488)
T KOG2325|consen 345 LSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGT 424 (488)
T ss_pred HhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccc
Confidence 33333322221111110000 000 001122222111 1111111111111111 1223445588888899999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHH
Q 042372 312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLC 359 (402)
Q Consensus 312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (402)
..++....+..+..++|.......... +.+..+.+.++..++...+
T Consensus 425 ~qg~~~~~~s~~~~~~~~~~t~~~~~~--g~~~v~~~~~~~~l~~~~l 470 (488)
T KOG2325|consen 425 MQGVFSISGSIARVVGPIFSTAIFTLS--GPRPVWIILLCLLLVVAAL 470 (488)
T ss_pred eeEEEEeccchhhhhhHHHHhhhHHhc--CccHHHHHHHHHHHHHHHH
Confidence 999999999999999998887777766 6776666555554444333
No 225
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.60 E-value=6.5e-07 Score=84.84 Aligned_cols=176 Identities=13% Similarity=-0.025 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc-----
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG----- 228 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g----- 228 (402)
.......++.++.. +......+.++. ++|.+..+.+. ......+.-.+ .++.|.++||++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~------------~~sl~~lpw~~-K~l~g~l~D~~~i~G~r 93 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQR------------LVGLSSLGWAL-KPFAGVMSDTFPLFGYT 93 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHH------------HHHHHHHHHHH-HHHHHHHHHhcCCCCcc
Confidence 34444466677766 444444455555 58999887543 33333333333 335899999997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh
Q 042372 229 RFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL 308 (402)
Q Consensus 229 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 308 (402)
||+.++++.++.+ +.....+.. . .+......+......++........-.+..|..+ +.
T Consensus 94 Rr~~l~~~~~l~~-~~~~~~l~~---~----------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~ 152 (468)
T TIGR00788 94 KRWYLVLSGLLGS-AILYGLLPG---K----------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ES 152 (468)
T ss_pred chHHHHHHHHHHH-HHHHHhccc---c----------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cC
Confidence 6776666654442 111111110 0 1111222212222222233333455667788887 44
Q ss_pred hhhh---HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 309 RSTC---HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 309 r~~~---~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
++.. .+.......+|..+++.+.+.+.+.. +|+..|++.+++.++..+...+++|.+
T Consensus 153 ~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~--~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 153 PSAGPSLVSWMWGASATGGLISSLLGGPLLDKT--LTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred CCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHhccccc
Confidence 4443 33344444579999999999998877 899999998888887755556678764
No 226
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.53 E-value=3.3e-07 Score=83.31 Aligned_cols=174 Identities=10% Similarity=0.022 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 233 (402)
++......+...+.+-....+.+.++++ .|++..+.|. ..+...+..++..++.|.++||+|.|+-+
T Consensus 9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~------------i~s~~~~~~l~~qp~~G~i~Dklg~kK~L 76 (412)
T PF01306_consen 9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGI------------IFSAGSLFALLAQPVYGFISDKLGLKKHL 76 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHH------------HHHHHHHHHHHHHHhHHHhcchhhhhHHH
Confidence 3333344444444444455566777876 8999997666 88888888999999999999999976655
Q ss_pred HHHHHHHHHHHHHHHH-hhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch---hhh
Q 042372 234 LGGFLLMSICMAILGA-RYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA---RLR 309 (402)
Q Consensus 234 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---~~r 309 (402)
+....+..+....+.. ....... .+.+...++..+. .+....+..- +.|.+-. +..
T Consensus 77 l~~i~~l~~l~~pff~~v~~pll~---------------~n~~lg~iig~i~---l~~~f~~~~~--~~Ea~~er~sr~~ 136 (412)
T PF01306_consen 77 LWFIAILLLLFGPFFIYVFGPLLQ---------------SNFWLGAIIGGIY---LGLVFNAGVP--LSEAYAERVSRRN 136 (412)
T ss_dssp HHHHHHHHHTCHHHHHHTHHHHHH---------------TT-HHHHHHTTTT---TTTTTTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH---HHHHHcccch--HHHHHHHHHHHHh
Confidence 4433222211111111 1100000 1111111111111 1111111111 1343322 223
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 310 STCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 310 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+.-.|=....+.+|.++++.+.|.+.+. +....|++..+..++..++.+..
T Consensus 137 ~feYG~~R~wGSig~ai~s~~~G~L~~i---~p~~~fwi~s~~~~il~lll~~~ 187 (412)
T PF01306_consen 137 GFEYGRARMWGSIGFAIASLLAGILFNI---NPNIIFWIASAAAIILLLLLLLL 187 (412)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cCCcchHHHHhhHHHHHHHHHhheeeee---CccHHHHHHHHHHHHHHHHHHHc
Confidence 4446777888899999999999999875 45577776665555544444444
No 227
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.52 E-value=1.5e-06 Score=81.37 Aligned_cols=63 Identities=5% Similarity=-0.075 Sum_probs=45.5
Q ss_pred HhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch-hHHHHHHHHHHHHHHHHHH
Q 042372 174 LTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR-FIIQLGGFLLMSICMAILG 248 (402)
Q Consensus 174 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~ 248 (402)
.+++.++ ++.|++..+.+. ......++.+++.+..|.++||+|| |+.+.++.++.++...+..
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl------------~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGW------------VYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3444444 458899887665 7888889999999999999999965 7677766665555544443
No 228
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.50 E-value=4.1e-07 Score=85.04 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=81.9
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
...+..++.++|..+......+..-|+++.+..++.++..+.-......++.. -+..+. . ....--.+.
T Consensus 260 ~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~---------~Gi~d~-~-f~lgd~~l~ 328 (433)
T PF03092_consen 260 LSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLD---------LGIPDQ-W-FALGDTILE 328 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeee---------eCcCCe-E-EEEEhHHHH
Confidence 44666667777776776666666777777666544433322211111111000 000001 1 111111111
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCC------CchhhhHHHHHHHHHHHH
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK------QIKQSIIALAVVNFLGFL 358 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 358 (402)
......... ....+++|+.|+..-|+.+++...+.++|..++..+...+.+..+. +.....++..++.++...
T Consensus 329 ~~~~~i~~m-P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ 407 (433)
T PF03092_consen 329 EVIGMIAFM-PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLP 407 (433)
T ss_pred HHHHHHHHH-HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 111122222 2334569999999999999999999999999999888887766531 233444454555555555
Q ss_pred HHhhcccCC
Q 042372 359 CSFMVPETN 367 (402)
Q Consensus 359 ~~~~l~et~ 367 (402)
+..++|+.+
T Consensus 408 ll~lLp~~~ 416 (433)
T PF03092_consen 408 LLFLLPPQK 416 (433)
T ss_pred HHHHcCCCc
Confidence 555666543
No 229
>PRK11462 putative transporter; Provisional
Probab=98.47 E-value=6.7e-06 Score=77.88 Aligned_cols=172 Identities=21% Similarity=0.170 Sum_probs=100.6
Q ss_pred HHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhHHH-HHHHHH
Q 042372 166 DIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFIIQ-LGGFLL 239 (402)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~~~-~~~~~~ 239 (402)
+..+.....|+..|+.+ .|+++...+. +..+.-+...+.-++.|.++|| +|||+.. +++.+.
T Consensus 22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~------------i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~ 89 (460)
T PRK11462 22 HIIFDNVMLYMMFFYTDIFGIPAGFVGT------------MFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALP 89 (460)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHH------------HHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHH
Confidence 33444445556666555 7888885444 7788888888888999999996 5776544 455555
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCCh-hHHHHHHHHHHHHHhhcCCcccceeeecccCc-hhhhhhhHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGN-HAWFMILYGLTLFFANFGPNSTTFIVPAELFP-ARLRSTCHGISA 317 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~ 317 (402)
.+++.+++..... . .. .. ..+..+.+.++..+ .........++.+|+.+ ++.|++..+.-.
T Consensus 90 ~~i~~~llf~~p~-~-s~--------------~~~~~y~~~~~~~~~~~-~t~~~ipy~al~~~lt~d~~eRt~l~s~r~ 152 (460)
T PRK11462 90 FGIVCVLAYSTPD-L-SM--------------NGKMIYAAITYTLLTLL-YTVVNIPYCALGGVITNDPTQRISLQSWRF 152 (460)
T ss_pred HHHHHHHHHhCCC-C-Cc--------------chHHHHHHHHHHHHHHH-HHHHhccHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5555544332210 0 01 11 12222222222222 22222344566788876 688999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCC-----CchhhhHHHHHHHHHHHHHHhhc-ccC
Q 042372 318 AAGKAGAIVGAFGVQYYTQKGDK-----QIKQSIIALAVVNFLGFLCSFMV-PET 366 (402)
Q Consensus 318 ~~~~~g~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l-~et 366 (402)
..+.+|..+++.+...+....+. +|.....+++++.+++.+++++. +|.
T Consensus 153 ~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 153 VLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 99999888887776554443321 45555556666555555444433 443
No 230
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.46 E-value=3.1e-06 Score=77.55 Aligned_cols=143 Identities=15% Similarity=0.070 Sum_probs=83.3
Q ss_pred HHHHHHhhhcccchhhhhhccccchh-------HHHHHHHHHHHHHHHHHHHhhccccC-CCCCCCCCCCCccCCChhHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRF-------IIQLGGFLLMSICMAILGARYDSLRG-KKCDAKKDPLHEYCDGNHAW 276 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 276 (402)
..++..+.-++.+++..++..|.+++ .-+-.+..+++.+.+++......... .+ ..+.+
T Consensus 329 fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~-------------~~s~~ 395 (498)
T COG3104 329 FQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSG-------------LVSVW 395 (498)
T ss_pred HHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------------CcCHH
Confidence 44455555555555556666664333 12233444445555444444222221 10 23334
Q ss_pred HHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHH------HhhhcCCCchhhhHHHH
Q 042372 277 FMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY------YTQKGDKQIKQSIIALA 350 (402)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~------~~~~~~~~~~~~~~~~~ 350 (402)
+.+...++..++.....|+..+++..+.|+...+..++........++.++..+.+. ..+.. .....|...+
T Consensus 396 ~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~--~~~~~F~~~g 473 (498)
T COG3104 396 WLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF--IEGRVFGTIG 473 (498)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh--hhhhhHHHHH
Confidence 444445555666777888888999999999999999998888888888877766662 11222 3446666666
Q ss_pred HHHHHHHHHHhh
Q 042372 351 VVNFLGFLCSFM 362 (402)
Q Consensus 351 ~~~~~~~~~~~~ 362 (402)
...++..+..+.
T Consensus 474 ~v~i~~~~~~~~ 485 (498)
T COG3104 474 VVAIVIGILLLL 485 (498)
T ss_pred HHHHHHHHHHHH
Confidence 666655554443
No 231
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.42 E-value=1.4e-06 Score=80.10 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=96.1
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
.......+.++.-++.+++..|+|+-+++..++.+..+=.+.+... .++ |.++.+=++
T Consensus 411 ~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------------------~n~-W~vLPieil 468 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------------------QNP-WMVLPIEIL 468 (618)
T ss_pred hhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh---------------------cCc-hheeeHHHH
Confidence 6677778888888899999999999999888866555555444443 222 333333333
Q ss_pred HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH-HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG-KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
.+......+...-+|++...|++.|.++.++.+... .+|-.+|+++.|.+.+.. +-+..|.++++.+++..++...
T Consensus 469 qgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f--g~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 469 QGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF--GARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee--hhHHHHHHHHHHHHHHHHHHHH
Confidence 333233334456678899999999999999887754 557779999999999887 7788888888887776666553
No 232
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.38 E-value=2.2e-05 Score=69.31 Aligned_cols=156 Identities=18% Similarity=0.045 Sum_probs=90.4
Q ss_pred hhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 042372 179 IYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKK 258 (402)
Q Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (402)
+.+++|++..+.+. ++........+...+.|.++||+|||+.-+...++.+++++.-..
T Consensus 60 LY~~yg~~~~qIa~------------Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--------- 118 (354)
T PF05631_consen 60 LYESYGFSEHQIAI------------LFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--------- 118 (354)
T ss_pred HHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---------
Confidence 34568888886554 666667777777778999999999999888776666666543222
Q ss_pred CCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCccccee-eecc----cCchhhhhhhHHHHHH-HHHHHHHHHHHhHH
Q 042372 259 CDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFI-VPAE----LFPARLRSTCHGISAA-AGKAGAIVGAFGVQ 332 (402)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e----~~p~~~r~~~~~~~~~-~~~~g~~i~~~~~~ 332 (402)
++ ...+.+-.++++....-..+..=+ ++.| -+|.+..+...+.... .+.+-.+++..+..
T Consensus 119 -------------~~-~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~ 184 (354)
T PF05631_consen 119 -------------SN-YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVAN 184 (354)
T ss_pred -------------cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHH
Confidence 11 122222223333222221111111 2233 3566655555555552 23334445555555
Q ss_pred HHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCCC
Q 042372 333 YYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNGL 369 (402)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~~ 369 (402)
.+.+..+.+...+|....++.+++.++.... +|..+.
T Consensus 185 ~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 185 VLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 6666553345788888888887777766644 776554
No 233
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.38 E-value=8.7e-06 Score=75.18 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=89.0
Q ss_pred HHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc-hhHHHHHHHHHHHHHHHHHH
Q 042372 170 YTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG-RFIIQLGGFLLMSICMAILG 248 (402)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g-rr~~~~~~~~~~~~~~~~~~ 248 (402)
-....|.+.++++.|++..+.+. ..+...+..+++.++.|.++||.+ +|+.+.+..++.++.+....
T Consensus 19 G~~~p~~~~~L~~~G~s~~qIG~------------l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 19 GAFLPYLPLYLESRGFSGTQIGI------------LLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445678899999999997666 788888889999999999999986 46666665555555443333
Q ss_pred HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372 249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA 328 (402)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~ 328 (402)
.. .+.+....+..+ .........|..-+++.+... .++.-+|-....+.+|-+++.
T Consensus 87 ~~---------------------~~f~~~~~~~~l-~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~ 142 (400)
T PF03825_consen 87 FS---------------------SSFWWLFVIMLL-FSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAA 142 (400)
T ss_pred Hh---------------------ccHHHHHHHHHH-HHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHH
Confidence 21 222222222222 222233333444444444433 234445556666666666664
Q ss_pred HhH-HHHhhhcCC-CchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 329 FGV-QYYTQKGDK-QIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 329 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
... ..+....+. +....+++.++..++.....+.+|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~ 183 (400)
T PF03825_consen 143 LAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTP 183 (400)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 432 222222210 222345555554444444455567665
No 234
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.34 E-value=8.3e-06 Score=76.16 Aligned_cols=136 Identities=21% Similarity=0.182 Sum_probs=101.4
Q ss_pred HhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhh
Q 042372 210 LFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFAN 289 (402)
Q Consensus 210 ~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (402)
.+..++.+...|.++||+|||..+........+....+.+. . ++..++..+ .++.
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~----------------------~-~~~~~~~~l--~g~~ 126 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ----------------------G-YWFFLLLGL--SGGF 126 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH----------------------H-HHHhhhccc--ccch
Confidence 45566667788999999999999988876666555554442 2 122222222 2223
Q ss_pred cCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372 290 FGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNG 368 (402)
Q Consensus 290 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~ 368 (402)
....+..++++++....+.|....|+.+.....+..++|...+...... ++..+|.+..+..+++.+...+ +||+..
T Consensus 127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~--~~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL--GIALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHhhccccccC
Confidence 3445577889999999999999999999999999999999999998886 8888999988888888887774 588765
Q ss_pred CCcc
Q 042372 369 LSLE 372 (402)
Q Consensus 369 ~~~~ 372 (402)
.+.+
T Consensus 205 ~~~~ 208 (463)
T KOG2816|consen 205 EKER 208 (463)
T ss_pred cccc
Confidence 5443
No 235
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.29 E-value=6.7e-05 Score=69.33 Aligned_cols=174 Identities=20% Similarity=0.163 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhH-HHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFI-IQL 234 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~-~~~ 234 (402)
.-+..+..+.....|+..|..+ .|+++..++. +..+.-+...+.-++.|.++|| +||++ .++
T Consensus 20 gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~------------iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL 87 (467)
T COG2211 20 GDFASNFAFGIVVLYLLFFYTDVFGLSAALAGT------------IFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLL 87 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHH------------HHHHHHHHHHHhcchheeeecccccccccccHHHH
Confidence 3334444445555666666666 8888885544 7888888888899999999996 56654 455
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-hhhhhhhH
Q 042372 235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-ARLRSTCH 313 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~ 313 (402)
++.+..++...++..... .... .......+.+.+...+ .........++.+|+.+ ++.|.+..
T Consensus 88 ~g~ip~~i~~~l~F~~p~-~~~~--------------~k~~ya~vtY~l~~l~-YT~vniPy~al~~~iT~d~~ER~~l~ 151 (467)
T COG2211 88 WGAIPFAIVAVLLFITPD-FSMT--------------GKLIYALVTYMLLGLG-YTLVNIPYGALGPEITQDPQERASLT 151 (467)
T ss_pred HHhHHHHHHHHHHHcCCC-cccC--------------cchHHHHHHHHHHHHH-HHheeCchhhcchhhcCCHHHHHHHH
Confidence 554544444444333211 1101 1122222222222222 23333334566678775 57899999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCC-----CchhhhHHHHHHHHHHHHHHhh
Q 042372 314 GISAAAGKAGAIVGAFGVQYYTQKGDK-----QIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
+.-+....+|.++...+.+.+....+. +|+...++++++..+..+++++
T Consensus 152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888777765543 4445555555555555555443
No 236
>PRK09848 glucuronide transporter; Provisional
Probab=98.21 E-value=5.8e-05 Score=71.45 Aligned_cols=66 Identities=24% Similarity=0.239 Sum_probs=44.1
Q ss_pred HHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc----chhHHH-HHHHHH
Q 042372 166 DIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI----GRFIIQ-LGGFLL 239 (402)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~----grr~~~-~~~~~~ 239 (402)
...+.....|++.|+++ .|++..+.+. ...+..+...+..++.|.++||. |||+.. +++.+.
T Consensus 21 ~~~~~~~~~~l~~y~~~~~gl~~~~~g~------------~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~ 88 (448)
T PRK09848 21 NFAFAMGALFLLSYYTDVAGVGAAAAGT------------MLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP 88 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence 33444444445556665 6888876555 77888888999999999999996 766654 445443
Q ss_pred HHHH
Q 042372 240 MSIC 243 (402)
Q Consensus 240 ~~~~ 243 (402)
..+.
T Consensus 89 ~~~~ 92 (448)
T PRK09848 89 LMIF 92 (448)
T ss_pred HHHH
Confidence 3333
No 237
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.19 E-value=3.8e-05 Score=75.11 Aligned_cols=135 Identities=15% Similarity=0.091 Sum_probs=87.5
Q ss_pred cccchhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCC
Q 042372 214 VPGYWFTVFLIDR-IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGP 292 (402)
Q Consensus 214 ~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (402)
-+..+++|+++|+ +||++.++++.++..++.+++.+........ .......++...+...+..+.
T Consensus 37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~--------------~~~~~~~l~gLaLia~G~Ggi 102 (654)
T TIGR00926 37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH--------------PLHDLLDLLGLALIALGTGGI 102 (654)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc--------------chHHHHHHHHHHHHHhhcccc
Confidence 3344578899996 5999999999888888877776532110000 011111222222233334445
Q ss_pred cccceeeecccCchh---hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC-----CCchhhhHHHHHHHHHHHHHHhh
Q 042372 293 NSTTFIVPAELFPAR---LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD-----KQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 293 ~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
-+...+...|.++++ .|.....+.+...++|+++++.+.+++.+..+ .+|...|.+.+++.++++++...
T Consensus 103 Kp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 103 KPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred ccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 556666777877643 47788899999999999999999998874421 15778888888887777766554
No 238
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.17 E-value=8.2e-05 Score=67.63 Aligned_cols=72 Identities=10% Similarity=0.111 Sum_probs=57.2
Q ss_pred hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372 6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL 85 (402)
Q Consensus 6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~ 85 (402)
.+|+--..|+++--++.+...++.-+|..++.++|-.+.. .+..+.+..+.+......+
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs---------------------~~~~sy~~L~~isl~~~~~ 173 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS---------------------FGGVSYFQLNYISLASVSL 173 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hcCCCHHHHHHHHHHHHHH
Confidence 4566667788888899999999999999999999998873 2556688888887777777
Q ss_pred HHHHHhhcCCCch
Q 042372 86 TYYWRMKMPETAR 98 (402)
Q Consensus 86 ~~~~~~~lpesp~ 98 (402)
.+++.+++|..++
T Consensus 174 a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 174 ALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHcCCCCc
Confidence 7777788887654
No 239
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0002 Score=66.22 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhcccchhhhhhccc---cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHH
Q 042372 202 SKAMFLVALFATVPGYWFTVFLIDR---IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFM 278 (402)
Q Consensus 202 ~~~~~~~~~i~~~~g~~~~g~l~dr---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (402)
.++......++.+.+....+.+.+| +||++.+.++..+..+..++.........+.+ +.+.+++.. .......
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~-~t~~~~~~~---~~~~~~~ 356 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLR-PTDSPPLLF---TPSYYLA 356 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCC-CCccccccc---ccchhHH
Confidence 3335556667777777777777765 57888888887666665554443322111110 001111100 1112334
Q ss_pred HHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHH
Q 042372 279 ILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYY 334 (402)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 334 (402)
.+.....++.-.......+.++...+ ++.|..+.++.-.-..++..++-+..+..
T Consensus 357 ~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 357 LIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44444555555556666777778888 46688888888887777776666555544
No 240
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.09 E-value=4.1e-05 Score=69.25 Aligned_cols=118 Identities=15% Similarity=0.065 Sum_probs=78.4
Q ss_pred HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372 204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL 283 (402)
Q Consensus 204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (402)
+.+.++.+..++..+.+-|+.||+|-|...+++..+.+++..+-.+......++ .. .. .+...
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~---------------~f-~~-~l~~~ 145 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPP---------------LF-RR-PLTHT 145 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccc---------------cc-hh-hhhHH
Confidence 366777777888888899999999999999999998888877765543321111 11 11 11111
Q ss_pred HHHHhhcC---CcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372 284 TLFFANFG---PNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 284 ~~~~~~~~---~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
.....+.+ ......-+..-.||+++|+++..+..+.+.+|.+++..+.+.+....
T Consensus 146 Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 146 GQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 11111111 11111123455799999999999999999999999998888877654
No 241
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.07 E-value=9.5e-05 Score=65.14 Aligned_cols=159 Identities=17% Similarity=0.054 Sum_probs=112.1
Q ss_pred HHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH
Q 042372 167 IAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI 246 (402)
Q Consensus 167 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 246 (402)
....+....++.+-++.|.+...++. ...+..++....+++..++.+|+|.++.+..+.++.+++.++
T Consensus 26 ~~itsvgPLL~~Ir~~~gls~s~aGl------------LTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i 93 (395)
T COG2807 26 PAITSVGPLLDEIRQDLGLSFSVAGL------------LTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI 93 (395)
T ss_pred hhhhhhhhhHHHHHHHhcccHHHHHH------------HHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34445555667777888998886665 888888888888889999999999999998887776666655
Q ss_pred HHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHH
Q 042372 247 LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIV 326 (402)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i 326 (402)
=... .. ...+.-..+.+.+....+......+-+.||++. +..+|++.+...+++++
T Consensus 94 R~~~----------------------~~-~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaL 149 (395)
T COG2807 94 RSLG----------------------GL-PLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAAL 149 (395)
T ss_pred Hhcc----------------------cH-HHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHH
Confidence 4432 11 111111222222112222344456678888664 88999999999999999
Q ss_pred HHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372 327 GAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
++.+...+.++.+ +|+....+.+..++++++..+.
T Consensus 150 aa~lavpla~~~~-gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 150 AAALAVPLAQHSG-GWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred HhhhhhHHHHhhc-cHHHHHHHHHHHHHHHHHHHhh
Confidence 9988888877763 7999998888888887776653
No 242
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.06 E-value=0.00074 Score=62.53 Aligned_cols=133 Identities=13% Similarity=0.150 Sum_probs=84.3
Q ss_pred HHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372 171 TINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR 250 (402)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 250 (402)
++...+..|+...|+++...+. .-....+.++.|.++..++.+|+|..+.=+++......+..+....
T Consensus 276 sf~~lmt~yl~~~G~s~~~igi------------~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~ 343 (432)
T PF06963_consen 276 SFGGLMTAYLKSQGYSPSVIGI------------FRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS 343 (432)
T ss_pred cCcHHHHHHHHHCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 3444556677777999886544 6667778888888999999999999888888877666655544333
Q ss_pred hccccCCCCCCCCCCCCccCCC-hhHH-HHHHHH-HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHH
Q 042372 251 YDSLRGKKCDAKKDPLHEYCDG-NHAW-FMILYG-LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVG 327 (402)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~ 327 (402)
.. .... + .... ..++.+ ...=.+-.+..-...-+..|..|++.||...|+-+..+++...+.
T Consensus 344 ~~-~~~~--------------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 344 FW-APGS--------------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred Hh-cCCC--------------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 22 2211 1 1111 111111 111122333344445567899999999999999999888766654
Q ss_pred HHh
Q 042372 328 AFG 330 (402)
Q Consensus 328 ~~~ 330 (402)
-..
T Consensus 409 ~~~ 411 (432)
T PF06963_consen 409 FVL 411 (432)
T ss_pred HHH
Confidence 433
No 243
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=97.93 E-value=0.00023 Score=62.14 Aligned_cols=73 Identities=7% Similarity=0.060 Sum_probs=56.2
Q ss_pred hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372 6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL 85 (402)
Q Consensus 6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~ 85 (402)
++|+-+..+|+++.++.+...+..-.|...|..++-.+.. .+..+++..-.+......+
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs---------------------~~~~sy~~LN~ISL~~~~i 174 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVS---------------------LETLSYTTLNYISLAEVTI 174 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhh---------------------hcccchhhhchhhHHHHHH
Confidence 4677777899999999999999999999999999988872 2555666666666666666
Q ss_pred HHHHHhhcCCCchh
Q 042372 86 TYYWRMKMPETARY 99 (402)
Q Consensus 86 ~~~~~~~lpesp~~ 99 (402)
..++..++|..+|-
T Consensus 175 a~~~A~fLP~v~rS 188 (433)
T KOG3810|consen 175 AVLLALFLPRVKRS 188 (433)
T ss_pred HHHHHhhCCCCchh
Confidence 66777788876654
No 244
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.82 E-value=8.2e-05 Score=50.76 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372 163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
+......-....|.|.++++.|++..+.+. +..+..+..+++.++.|.++||++|++..+....
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGi------------l~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGI------------LSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 333344556677889999999999997666 7888888899999999999999999888776543
No 245
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.76 E-value=0.00061 Score=61.46 Aligned_cols=116 Identities=17% Similarity=-0.019 Sum_probs=72.7
Q ss_pred ccchhhhhhccccc-----hhHHHHHH-HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHH--HHHHHHHHHH
Q 042372 215 PGYWFTVFLIDRIG-----RFIIQLGG-FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAW--FMILYGLTLF 286 (402)
Q Consensus 215 ~g~~~~g~l~dr~g-----rr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 286 (402)
+..+..|+.+|+.+ ||..+++. ....+.+..+..............++. ..+.. ...+.+...+
T Consensus 29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~--------~~~~g~~~a~l~F~l~G 100 (403)
T PF03209_consen 29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG--------PFWLGLALAALAFLLYG 100 (403)
T ss_pred HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc--------ccHHHHHHHHHHHHHHH
Confidence 35678999999998 88766654 444444444444333322221111100 12222 2222222333
Q ss_pred HhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372 287 FANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 287 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
.+.........++.+|..|++.|+++.++.....-+|.+++..+.+.+.+..
T Consensus 101 ~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 101 LGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF 152 (403)
T ss_pred hhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3333444566778899999999999999999999999999999999888755
No 246
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.75 E-value=0.00011 Score=56.82 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=57.1
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+....++.|..|+++|++..++.+....+|..+++.+++.+. +..+||+.+++.++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~ 126 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA-----------------------QFLGWRAPFLFLAIL 126 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh-----------------------cccchHHHHHHHHHH
Confidence 455678899999999999999999999999999999999886 567899999987777
Q ss_pred HHHHHHH-HhhcCC
Q 042372 83 AALTYYW-RMKMPE 95 (402)
Q Consensus 83 ~~~~~~~-~~~lpe 95 (402)
.++..+. .++.||
T Consensus 127 ~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 127 ALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHhhcCCC
Confidence 6665444 334555
No 247
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.71 E-value=5.3e-06 Score=79.38 Aligned_cols=179 Identities=12% Similarity=0.020 Sum_probs=1.3
Q ss_pred HhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcccc
Q 042372 176 QKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLR 255 (402)
Q Consensus 176 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (402)
.+++-+++++++++.+. +.+..-++.++..++..++.+|..|-+.+-+|.++++++.++++++.....
T Consensus 26 lttiErRF~l~S~~~G~------------i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~ 93 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGL------------ISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSG 93 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcC
Confidence 34555568898887665 777788888888888888888877777888899999999998888764332
Q ss_pred CCC--CCC--------CCC-C--------------CCccCCChhH---HHHHHHHHHHHHhhcCCcccceeeecccCchh
Q 042372 256 GKK--CDA--------KKD-P--------------LHEYCDGNHA---WFMILYGLTLFFANFGPNSTTFIVPAELFPAR 307 (402)
Q Consensus 256 ~~~--~~~--------~~~-~--------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 307 (402)
.-. ... +.+ + ...-...... .+.++.-++.+.+....+++..+|+=|..+++
T Consensus 94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~ 173 (539)
T PF03137_consen 94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK 173 (539)
T ss_dssp ----------------------------------------------------------SSS-------------------
T ss_pred CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc
Confidence 110 000 000 0 0000011111 12222223334444556677888999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC----------------C----CchhhhHHHHHHHHHHHHHHhhcccC
Q 042372 308 LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD----------------K----QIKQSIIALAVVNFLGFLCSFMVPET 366 (402)
Q Consensus 308 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~~~~~l~et 366 (402)
.-+...|+.+....+|-++|-.+.+......- . .|+.-|++.+++.++..+..+++|+.
T Consensus 174 ~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 174 NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999888888877766665442210 0 36666777777777666666666654
No 248
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.68 E-value=0.00082 Score=63.08 Aligned_cols=153 Identities=15% Similarity=0.120 Sum_probs=89.4
Q ss_pred hhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcc--cchhhhhhcccc-----chhHHHHHHHHHHHHHHHHHHH
Q 042372 177 KDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVP--GYWFTVFLIDRI-----GRFIIQLGGFLLMSICMAILGA 249 (402)
Q Consensus 177 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--g~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~ 249 (402)
+.+.+++|.++.+.+ ....+..++ ..++.|.++|-+ .||+-++++.++.+++...++.
T Consensus 14 ~~l~~~l~ls~~~~~---------------~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~ 78 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQ---------------RLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL 78 (433)
T ss_pred HHHHHHcCCCHHHHH---------------HHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 344456888888633 223333332 344789999986 3556666666555444444444
Q ss_pred hhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC---chhhhhhhHHHHHHHHHHHHHH
Q 042372 250 RYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF---PARLRSTCHGISAAAGKAGAIV 326 (402)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~g~~i 326 (402)
.... ........++.+...++........-++..|.. |.+ |+...+.......+|+++
T Consensus 79 ~~~~------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv 139 (433)
T PF03092_consen 79 LPAS------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLV 139 (433)
T ss_pred cccc------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHH
Confidence 2110 011111111111111211112222333445554 545 888889999999999999
Q ss_pred HHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-cc
Q 042372 327 GAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PE 365 (402)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e 365 (402)
+..+.|.+.+.. +++..|.+.+.+.++..+..+++ +|
T Consensus 140 ~~~l~G~l~~~~--~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 140 GSLLSGPLLDSF--GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHhhhhhhhcC--CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 999999998887 77888888887777776666655 55
No 249
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.67 E-value=0.00047 Score=67.00 Aligned_cols=179 Identities=10% Similarity=-0.029 Sum_probs=115.9
Q ss_pred hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCC---
Q 042372 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGK--- 257 (402)
Q Consensus 181 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 257 (402)
+++++++++.+. +...+=++..+...+..+..-|.-|-+.+-+|.++++++.++.+++......-
T Consensus 125 rRF~i~Ss~sG~------------I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~ 192 (735)
T KOG3626|consen 125 RRFKISSSQSGL------------IASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE 192 (735)
T ss_pred hhcCCCCCccee------------EeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence 347888876555 55555666666666777888888888888889999999988888774322110
Q ss_pred ------CCCCC--------------------CCCCCccCCCh-hHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372 258 ------KCDAK--------------------KDPLHEYCDGN-HAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS 310 (402)
Q Consensus 258 ------~~~~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 310 (402)
...++ .+...+..++. .+.++++.-++.+.+.....+...+|+=|...++.-+
T Consensus 193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Sp 272 (735)
T KOG3626|consen 193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSP 272 (735)
T ss_pred hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCc
Confidence 00000 11111111122 2223333334445555666777888889998888888
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhhcCC-----------------CchhhhHHHHHHHHHHHHHHhhcccCCCCCc
Q 042372 311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDK-----------------QIKQSIIALAVVNFLGFLCSFMVPETNGLSL 371 (402)
Q Consensus 311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~ 371 (402)
...|+.+++..+|-++|-++.+.+.....+ .|+.-|++.+.+.++..+..+++|++..+..
T Consensus 273 lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 273 LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 889999999888888888777766532110 4667778888888888888888887665544
No 250
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.66 E-value=0.0055 Score=55.95 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=32.6
Q ss_pred cccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372 293 NSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT 335 (402)
Q Consensus 293 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 335 (402)
+...+..+.|..|++.|..++|.....-.+|..++..+.-.+-
T Consensus 353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344555677789999999999999998888888776665543
No 251
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.65 E-value=0.0018 Score=61.38 Aligned_cols=144 Identities=16% Similarity=0.059 Sum_probs=83.0
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH-HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS-ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL 283 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (402)
..++..+...+-.++.|-++|+-++||.++..+.+.+ ++.+.+.+.. . ..++...+++.+
T Consensus 75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~-----~--------------~~~~~~~~l~ii 135 (477)
T PF11700_consen 75 ANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS-----P--------------GQWWLALVLFII 135 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC-----c--------------chHHHHHHHHHH
Confidence 4455566666677788999999988776665544333 3444333321 1 222222333333
Q ss_pred HHHHhhcCCcccceeeecccCchhhh--------------------------hhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372 284 TLFFANFGPNSTTFIVPAELFPARLR--------------------------STCHGISAAAGKAGAIVGAFGVQYYTQK 337 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 337 (402)
...+... ......++..|+.+++.+ ++..+.....+++|+.+.-.+.-.+...
T Consensus 136 a~v~~~~-~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~ 214 (477)
T PF11700_consen 136 ANVGYEA-SNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVIS 214 (477)
T ss_pred HHHHHHH-HHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222222 223445667888887777 8999999999999988776655444332
Q ss_pred cCC------CchhhhHHHHHHHHHHH-HHHhhcccCCC
Q 042372 338 GDK------QIKQSIIALAVVNFLGF-LCSFMVPETNG 368 (402)
Q Consensus 338 ~~~------~~~~~~~~~~~~~~~~~-~~~~~l~et~~ 368 (402)
.+. ..+..+.+.++..++.. ...+++|+.++
T Consensus 215 ~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 215 PGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred CCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 211 24666776666655444 34445676654
No 252
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.49 E-value=0.0077 Score=56.59 Aligned_cols=119 Identities=9% Similarity=0.033 Sum_probs=69.9
Q ss_pred chhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCC-CCCccCCC--------hhHHHHHHHHHHHH
Q 042372 217 YWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGK-KCDAKKD-PLHEYCDG--------NHAWFMILYGLTLF 286 (402)
Q Consensus 217 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~ 286 (402)
.++.+++++|++|++++.+..........++++......+. +.+.-.| ........ ..|...+.+...-.
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 45689999999999988776666666666555543321111 0000000 00000000 01111122222222
Q ss_pred HhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372 287 FANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT 335 (402)
Q Consensus 287 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 335 (402)
.......-..|.+++|++..++..+-.++....+++|.++++.+..++.
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222267889999999999999999999999999999998887766
No 253
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.48 E-value=0.0072 Score=55.26 Aligned_cols=126 Identities=11% Similarity=-0.014 Sum_probs=78.5
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCccccee
Q 042372 219 FTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFI 298 (402)
Q Consensus 219 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (402)
....+.|.+|-|++++.+.+...+...++.+. .+...+.++-...+.. .+.-...++
T Consensus 60 ~vflltd~l~Ykpviil~~~~~i~t~~lll~~---------------------~sv~~mq~~q~~yg~~--~a~evay~s 116 (412)
T PF01770_consen 60 PVFLLTDYLRYKPVIILQALSYIITWLLLLFG---------------------TSVLAMQLMQFFYGLA--TAAEVAYYS 116 (412)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---------------------CcHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 56789999999999999877766666655553 2222333322222221 111223344
Q ss_pred eecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 299 VPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 299 ~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
|+=...|+++=-++.+......-+|.+++..++-.+....+.++.....+......+++++.+++|..+
T Consensus 117 Yiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 117 YIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 444555666656667777777777888888777766664433566666666666777777777887644
No 254
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=97.15 E-value=0.012 Score=49.86 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=36.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHHHHHHhh
Q 042372 16 RTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMK 92 (402)
Q Consensus 16 ~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~~~~~~~ 92 (402)
|+|+..+.+-..+.++|.++.-..-..-...- ......|++++.+.+++.++-++.+..
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~------------------~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVV------------------IALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778887778888888887765432210000 112345999999888776665554443
No 255
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.04 E-value=0.02 Score=50.46 Aligned_cols=129 Identities=17% Similarity=0.171 Sum_probs=74.6
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
......+...++.++.|.+.||+|||+.+..+......+.+...+... . .. .........
T Consensus 44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~-~~~~~~~~~ 103 (338)
T COG0477 44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN----V---------------GL-ALLLILRLL 103 (338)
T ss_pred HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc----c---------------hH-HHHHHHHHH
Confidence 445555555666688999999999997777766543333222222211 0 11 222222222
Q ss_pred HHHhhcCCcccceeeecccCch-hhhhhhHHHHHH-HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372 285 LFFANFGPNSTTFIVPAELFPA-RLRSTCHGISAA-AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN 353 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (402)
.+.......+....+..|.+|. +.|+...+.... ...++..+++.+.+.+......+|+..+.+.....
T Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2332334455667778899887 678888888777 56777778876666555441116777555444443
No 256
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.04 E-value=0.014 Score=45.99 Aligned_cols=103 Identities=14% Similarity=-0.003 Sum_probs=64.5
Q ss_pred HhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhh
Q 042372 210 LFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFAN 289 (402)
Q Consensus 210 ~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (402)
.....+.+++.+.+.+++|.|+.++++.+...+....... .+. ..++....+.+++.
T Consensus 47 Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----------------------~~~-~~l~~~s~l~G~~~ 103 (156)
T PF05978_consen 47 YGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----------------------PNS-YTLYPASALLGFGA 103 (156)
T ss_pred HHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------------------hhH-HHHHHHHHHHhhhh
Confidence 3334455567889999999999999996655544333222 122 23333333333333
Q ss_pred cCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372 290 FGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT 335 (402)
Q Consensus 290 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 335 (402)
...+...-.++.+...++.|++-.++.-.+...+.++|....-.+.
T Consensus 104 a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 104 ALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344456778888888999888888888888777776655443
No 257
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=97.02 E-value=0.021 Score=53.05 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=32.6
Q ss_pred cceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372 295 TTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK 337 (402)
Q Consensus 295 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 337 (402)
...+.-+.+..|..-|+.+.+.+++.++|+-.-..+.-++.|.
T Consensus 425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 3344557777889999999999999999987666666666554
No 258
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.97 E-value=0.35 Score=45.70 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=36.1
Q ss_pred hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042372 6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSG 45 (402)
Q Consensus 6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~ 45 (402)
..++.|.++.++-.|..+++..+.++|.++++.+...+.+
T Consensus 151 W~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 151 WGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988888764
No 259
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=96.90 E-value=0.062 Score=49.85 Aligned_cols=125 Identities=5% Similarity=-0.104 Sum_probs=76.2
Q ss_pred hcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCC----------CC-CCCCccCCChhHHHHHHH
Q 042372 213 TVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDA----------KK-DPLHEYCDGNHAWFMILY 281 (402)
Q Consensus 213 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~ 281 (402)
+++..++..++.+++.|++++.+.......+.+++++..+...+.-.++ ++ +-.+....-+.|...+.+
T Consensus 75 avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Y 154 (509)
T COG3202 75 AVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFY 154 (509)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHH
Confidence 3444556788999999999887777776777777766554222110011 11 111222122223333333
Q ss_pred HHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372 282 GLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK 337 (402)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 337 (402)
...-..+.....-..|..+.|+...+...+-+++.+...+++..++..+..++...
T Consensus 155 i~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 155 IMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33222222222335667789999999999999999999999999888888777653
No 260
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.88 E-value=0.17 Score=47.57 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=29.2
Q ss_pred ccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHH
Q 042372 294 STTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQ 332 (402)
Q Consensus 294 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~ 332 (402)
+..+.+..+..+++.|..+..+....-.+|-.+|..+.-
T Consensus 391 s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 391 SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888899998888888888888777776543
No 261
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.77 E-value=0.094 Score=48.85 Aligned_cols=145 Identities=10% Similarity=-0.024 Sum_probs=77.3
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH----HHHhhccccCCCCCCCCCCCCccCCChhHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI----LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMIL 280 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (402)
....-.+..++.+...|...||..|.+....+.+..-+...+ +............ + .........+
T Consensus 43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~-~---------~~~~~~l~~~ 112 (432)
T PF06963_consen 43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQ-S---------SWLFIALFAL 112 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccc-c---------chHHHHHHHH
Confidence 555566667777778899999999988776665544333222 2221111111000 0 0111111111
Q ss_pred HHHHHHHhhcCCcccceee----ecccC--chhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHH
Q 042372 281 YGLTLFFANFGPNSTTFIV----PAELF--PARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNF 354 (402)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~----~~e~~--p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (402)
..+.......+......+. +..+. .+......++...-+-.+..+++|++.|.+.... +......+.++.++
T Consensus 113 ~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~--s~~~~~~~i~~~N~ 190 (432)
T PF06963_consen 113 LILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA--SPVIAAIFIAGWNL 190 (432)
T ss_pred HHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHHHH
Confidence 1111111111111111111 11222 3444566666666666678999999999998866 77777888888888
Q ss_pred HHHHHHh
Q 042372 355 LGFLCSF 361 (402)
Q Consensus 355 ~~~~~~~ 361 (402)
++.+.=+
T Consensus 191 ~S~~vEy 197 (432)
T PF06963_consen 191 ASVFVEY 197 (432)
T ss_pred HHHHHHH
Confidence 8877644
No 262
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.74 E-value=0.011 Score=40.76 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=59.3
Q ss_pred HHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH
Q 042372 167 IAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI 246 (402)
Q Consensus 167 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 246 (402)
++-+..+..+|.+.++.+++..+.+. +.+.+.++.++|.+...++.++.++++.+..+.+...+..+.
T Consensus 6 igRFayTplLP~M~~~~~ls~~~ag~------------lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (85)
T PF06779_consen 6 IGRFAYTPLLPLMQADGGLSLSQAGW------------LASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAA 73 (85)
T ss_pred hHHHHHHhHhHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44556666789999999999987665 888899999999999999999988888888888887777777
Q ss_pred HHHh
Q 042372 247 LGAR 250 (402)
Q Consensus 247 ~~~~ 250 (402)
+++.
T Consensus 74 ma~~ 77 (85)
T PF06779_consen 74 MALT 77 (85)
T ss_pred HHHH
Confidence 7664
No 263
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.59 E-value=0.0063 Score=54.46 Aligned_cols=78 Identities=14% Similarity=0.015 Sum_probs=56.9
Q ss_pred hcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC--------------CCchhhhHHHHHHHH
Q 042372 289 NFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD--------------KQIKQSIIALAVVNF 354 (402)
Q Consensus 289 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 354 (402)
.....+....+++++.|++.+++..++.+.++.+|..++|.+.+.+..... ..|+.++++.+.+.+
T Consensus 24 ~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~ 103 (310)
T TIGR01272 24 LTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALA 103 (310)
T ss_pred HHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344455677788999999899999999999999999999999987773210 157788886666655
Q ss_pred HHHHHHhhc--ccC
Q 042372 355 LGFLCSFMV--PET 366 (402)
Q Consensus 355 ~~~~~~~~l--~et 366 (402)
+..+...+. ||.
T Consensus 104 ~~~i~~~~~~~p~~ 117 (310)
T TIGR01272 104 VLAIIFAFLPLPEL 117 (310)
T ss_pred HHHHHHHHccCCCC
Confidence 555444444 554
No 264
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.0038 Score=53.37 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=68.7
Q ss_pred HHHHHHhhhcccchhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDR-IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL 283 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (402)
++++...-.++-++++|++.|| +|-|...++-+....++.++++.-... ...+.+...-.+
T Consensus 84 lYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~------------------~aFw~M~~GRF~ 145 (459)
T KOG4686|consen 84 LYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS------------------HAFWTMLAGRFL 145 (459)
T ss_pred eeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH------------------HHHHHHHhhhee
Confidence 5555666677778899999997 466655555544445555544432110 111122211111
Q ss_pred HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372 284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
+ +.++-........|..-.|..+.-+.++|+...+.++|+.+.-.+.+++.+..
T Consensus 146 F-GIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 146 F-GIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred e-ccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 1 11111122234556777788888899999999999999887777777777654
No 265
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.24 E-value=1.2 Score=42.55 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=35.7
Q ss_pred hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042372 6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSG 45 (402)
Q Consensus 6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~ 45 (402)
..+..|.++.++-.|..++++.+.++|.++++.+...+.+
T Consensus 166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999988888875
No 266
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.036 Score=50.90 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cch
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGR 229 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~gr 229 (402)
..+.+....+...+++-.-..|.+.+.+++|...+-.++ .-...-+..++..++.|..+|| +||
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~------------iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSI------------IWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccc------------cccccccccceeccccccccccccccccc
Confidence 455555556666666667777888899999988875332 3444445566667788999996 688
Q ss_pred hHHHHH-HHHHHHHHHHHHHHhhcccc--CCCCCCCCCCCCccCCChhHHHHHHHHHHH---HHhhcCCcccceeeeccc
Q 042372 230 FIIQLG-GFLLMSICMAILGARYDSLR--GKKCDAKKDPLHEYCDGNHAWFMILYGLTL---FFANFGPNSTTFIVPAEL 303 (402)
Q Consensus 230 r~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~e~ 303 (402)
|+.++. +.+...+.++++........ .++... ......+.+..+.. =+.........-++..|+
T Consensus 101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~----------~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl 170 (498)
T KOG0637|consen 101 RRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK----------PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADL 170 (498)
T ss_pred ccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc----------ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHh
Confidence 766554 44444555555444321110 010000 00111122221111 122223334556777888
Q ss_pred Cchhhhhh-hHHHHHHHHHHHHHHHHHhHH
Q 042372 304 FPARLRST-CHGISAAAGKAGAIVGAFGVQ 332 (402)
Q Consensus 304 ~p~~~r~~-~~~~~~~~~~~g~~i~~~~~~ 332 (402)
.....+.+ +++....+..+|+.+|-...+
T Consensus 171 ~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 171 ARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred ccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 87666666 888888888888887776665
No 267
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=95.99 E-value=0.44 Score=46.35 Aligned_cols=146 Identities=15% Similarity=0.078 Sum_probs=87.3
Q ss_pred cccchhhhhhcccc-chhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCC-hhHH--HHHHHHHHHHHhh
Q 042372 214 VPGYWFTVFLIDRI-GRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDG-NHAW--FMILYGLTLFFAN 289 (402)
Q Consensus 214 ~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~ 289 (402)
....+++++++|.+ ||-+.+.++.++..++++++.............-...+....+.. .... .+.........+.
T Consensus 87 ~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~ 166 (571)
T KOG1237|consen 87 FLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGA 166 (571)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheecc
Confidence 34445788999975 888898888888887766665544322211000000000001111 1111 1222222223345
Q ss_pred cCCcccceeeecccCc----hhhh--hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372 290 FGPNSTTFIVPAELFP----ARLR--STCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF 361 (402)
Q Consensus 290 ~~~~~~~~~~~~e~~p----~~~r--~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (402)
.+.-+....+-+|-++ .+.+ ..-+...+...++|..++..+..+..+.. +|...|.+..++.+++.++.+
T Consensus 167 gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~--~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 167 GGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV--GWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred CCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc--cceeeccHHHHHHHHHHHHHH
Confidence 5556677777888887 2222 35567777788888888888888887766 899889888888887776655
No 268
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=95.95 E-value=1.5 Score=41.18 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=34.3
Q ss_pred HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042372 7 VIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSG 45 (402)
Q Consensus 7 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~ 45 (402)
....|.+..++-.|..++++.+.+++..+++.+..++.+
T Consensus 171 ~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 171 QFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788899999999999999999999999998888874
No 269
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=95.95 E-value=0.0015 Score=58.32 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=2.4
Q ss_pred cccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH
Q 042372 293 NSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV 331 (402)
Q Consensus 293 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~ 331 (402)
.+..+.+..+..+++.|..+-.+....-.+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888887777777777766666543
No 270
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=95.92 E-value=0.18 Score=47.84 Aligned_cols=121 Identities=11% Similarity=-0.042 Sum_probs=69.1
Q ss_pred cchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcccc---CCCCCCCCCCCCccC-------CChhHHHHHHHHHHH
Q 042372 216 GYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLR---GKKCDAKKDPLHEYC-------DGNHAWFMILYGLTL 285 (402)
Q Consensus 216 g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 285 (402)
...+..+++++++|.+++.+..........++++..+... +.+...+++....+. .-+.|...+.+...-
T Consensus 75 f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aE 154 (491)
T PF03219_consen 75 FTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAE 154 (491)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3346789999999999887666555555555555432111 110000000000000 000111111222212
Q ss_pred HHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh
Q 042372 286 FFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ 336 (402)
Q Consensus 286 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 336 (402)
..+.....-..|.++.|+++.+...+-+++....+++|.+++.....++.+
T Consensus 155 lwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 155 LWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222568889999999999999999999999999999888777766
No 271
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=95.89 E-value=0.044 Score=50.52 Aligned_cols=117 Identities=11% Similarity=-0.031 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh---
Q 042372 231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR--- 307 (402)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--- 307 (402)
+.++++.++..++.+++.+........+ +.......+...+...+..+.=+....+..|.++++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~-------------~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPS-------------GIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhh-------------hHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 4566777777888777655543222110 111122222222334445555666777788888764
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372 308 LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 308 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (402)
.|.+.....+...++|..++....+++.+.. +|...|.+.++..+++.+..+.
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~--~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY--GWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS---HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhcccc--chhhhhhHHHHHHHHHHHHHHh
Confidence 5777888899999999999999999999777 8999999988888887776654
No 272
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=95.46 E-value=0.012 Score=53.81 Aligned_cols=38 Identities=5% Similarity=0.103 Sum_probs=30.8
Q ss_pred hhHHhhhhccccchhH-HHHHHHHHHHHHHHHHHHHHHH
Q 042372 5 SAVIMSEYANKRTRGA-FIAAVFAMQGMGILFAGVISLI 42 (402)
Q Consensus 5 ~~~~i~e~~~~~~rg~-~~~~~~~~~~lG~~~~~~~~~~ 42 (402)
+-++++|.+.+++|.+ +.+.+..+..+|..+|..++.+
T Consensus 163 ~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 163 CRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred HHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 4478889997777666 9999999999999988887753
No 273
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=95.42 E-value=1 Score=41.25 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=25.0
Q ss_pred CcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHH
Q 042372 292 PNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAF 329 (402)
Q Consensus 292 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~ 329 (402)
..+..+.+..+..|++.+-.+-.+....-..|-+.|..
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~ 397 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL 397 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34466778888888888777766666555555555543
No 274
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.23 E-value=0.21 Score=45.84 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.++.+|+.....+.. .+.+.+..++++..+.++-.+..+++
T Consensus 154 ~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 154 GAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred hhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566665555554 32255667777776665555444433
No 275
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=94.78 E-value=0.41 Score=43.80 Aligned_cols=144 Identities=14% Similarity=-0.020 Sum_probs=74.3
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHHHHH-HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGF-LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL 283 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (402)
..++..+...+-+++.|.++|+.|+|+..+..+ .+..++.+.+.+... .+.++..+++..
T Consensus 63 ~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~-------------------~s~~~~~l~~~i 123 (438)
T COG2270 63 ASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP-------------------GSYLLLLLLFLI 123 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC-------------------CchHHHHHHHHH
Confidence 344444555555667899999999776655443 333344444433211 122333333333
Q ss_pred HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH--HHHhh--------------hcCCCchhhhH
Q 042372 284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV--QYYTQ--------------KGDKQIKQSII 347 (402)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~--~~~~~--------------~~~~~~~~~~~ 347 (402)
....+.........++..++.+++.-++..++....+++|+.+.-... ..... ..+...+.++.
T Consensus 124 l~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~ 203 (438)
T COG2270 124 LASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGL 203 (438)
T ss_pred HHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHH
Confidence 222222222334455667788877777777887777777776544332 11111 01114566777
Q ss_pred HHHHHHHHHHHHHh-hcccCC
Q 042372 348 ALAVVNFLGFLCSF-MVPETN 367 (402)
Q Consensus 348 ~~~~~~~~~~~~~~-~l~et~ 367 (402)
+.++..++..+-.+ ..++..
T Consensus 204 l~A~W~li~~iPm~~~v~~~~ 224 (438)
T COG2270 204 LAALWWLLFALPMILNVHDAE 224 (438)
T ss_pred HHHHHHHHHHhHHHhcccccc
Confidence 76666655444333 445443
No 276
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=94.70 E-value=0.42 Score=44.76 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=19.2
Q ss_pred eeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHH
Q 042372 298 IVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY 333 (402)
Q Consensus 298 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 333 (402)
.+.-.+..++.++.+.........+|-+++-.++-.
T Consensus 141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFla 176 (544)
T PF13000_consen 141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLA 176 (544)
T ss_pred hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHh
Confidence 344556666777766544444445555554444433
No 277
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=94.58 E-value=0.34 Score=43.70 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc-----cc
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID-----RI 227 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d-----r~ 227 (402)
+.+..+.+.+..+++-+ +.....|.+++.-|.|-++.+. ......=.. --+++..++| |+
T Consensus 31 ~~illLl~LYllQGiP~-GL~~~iP~lL~ak~vSyt~~a~------------fS~ay~P~s--LKllWaPiVDs~y~k~~ 95 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPL-GLIGAIPLLLQAKGVSYTSQAI------------FSFAYWPFS--LKLLWAPIVDSVYSKRF 95 (510)
T ss_pred hhHHHHHHHHHHcCCch-hHhhhhHHHhcCCCcchhhhhh------------hhhhhhHHH--HHHHHHhhhHHHHHHhh
Confidence 45666667777766544 3333778888876666554332 111111000 1235677788 99
Q ss_pred chhHHHHH
Q 042372 228 GRFIIQLG 235 (402)
Q Consensus 228 grr~~~~~ 235 (402)
|||+..++
T Consensus 96 GrrksWvv 103 (510)
T KOG3574|consen 96 GRRKSWVV 103 (510)
T ss_pred ccccceee
Confidence 99986554
No 278
>PRK03612 spermidine synthase; Provisional
Probab=94.20 E-value=1.5 Score=42.39 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHhh-hcCCCchhhhHHHHHHHHH
Q 042372 310 STCHGISAAAGKAGAIVGAFGVQYYTQ-KGDKQIKQSIIALAVVNFL 355 (402)
Q Consensus 310 ~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 355 (402)
+...|-.+....+|+++|+++.+++.- .. |.....++.+.+.++
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l--G~~~t~~~~a~l~~~ 188 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRL--GLIRTAALTGSLNLL 188 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHH
Confidence 556788888899999999988776654 34 444444444444433
No 279
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=93.94 E-value=4.2 Score=40.47 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=47.9
Q ss_pred CchhHHhhhhcccc---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh
Q 042372 3 PLSAVIMSEYANKR---TRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG 79 (402)
Q Consensus 3 ~~~~~~i~e~~~~~---~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~ 79 (402)
|...+...|.++++ +|-....++..+.++|.+++..+..++...... .....+|...|.+.
T Consensus 104 p~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~----------------fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 104 PCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC----------------FGCQDCYPLAFGVP 167 (654)
T ss_pred cCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------cccCcchHHHHHHH
Confidence 44566777777654 366677777888889988888888777521100 01245799999998
Q ss_pred hHHHHHHHHHH
Q 042372 80 AVPAALTYYWR 90 (402)
Q Consensus 80 ~i~~~~~~~~~ 90 (402)
++..++.++..
T Consensus 168 ~i~m~ia~lvf 178 (654)
T TIGR00926 168 AILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 280
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=93.84 E-value=0.018 Score=53.90 Aligned_cols=64 Identities=17% Similarity=0.076 Sum_probs=49.6
Q ss_pred HHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHH
Q 042372 168 AFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSIC 243 (402)
Q Consensus 168 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~ 243 (402)
.+-.+..+++.++.++|+++.+.+. +....-+..+++.+++|+++||+.+|+.++++.++..+.
T Consensus 26 ~~g~l~pll~vy~kQLGl~p~~~Gt------------l~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~ 89 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFKQLGLNPAVVGT------------LTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVT 89 (618)
T ss_pred cccccchHHHHHHHHcCCCHHHhhh------------hhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 3445666788899999999997665 666677778889999999999998877777666554443
No 281
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=92.83 E-value=1.1 Score=40.53 Aligned_cols=44 Identities=7% Similarity=-0.008 Sum_probs=35.7
Q ss_pred cceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372 295 TTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 295 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
..++..+.+.++...|+.+.+.++..++|+-.-..+..++.+..
T Consensus 389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 34456688899999999999999999999887777777776643
No 282
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=92.16 E-value=8.7 Score=34.71 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-cccchhHH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLI-DRIGRFII 232 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~ 232 (402)
...............+.....|.|.+-.+ + .....|. ++....++.++|+.+..++. ++......
T Consensus 246 il~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~Gl------------IFssFM~a~MlGS~lf~~l~s~~~~~e~~ 311 (354)
T PF05631_consen 246 ILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGL------------IFSSFMVAMMLGSSLFSRLLSKSLRPESL 311 (354)
T ss_pred hHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchH------------HHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34444444444555555556677776522 1 0111222 67777788888888776544 44443444
Q ss_pred HHHHHHHHHHHHH
Q 042372 233 QLGGFLLMSICMA 245 (402)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (402)
+.....+.++++.
T Consensus 312 l~~v~~~aa~~l~ 324 (354)
T PF05631_consen 312 LRYVFAVAAVSLA 324 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444344433
No 283
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=92.00 E-value=7.7 Score=35.73 Aligned_cols=63 Identities=11% Similarity=-0.052 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR 226 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr 226 (402)
.+..++...+....++.+..-.+++.+++-..+.+.. ....+.....+..++....-.++.-|
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~---------F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKN---------FTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555666555322222211 11123334444445555555666666
No 284
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=1.6 Score=41.02 Aligned_cols=105 Identities=10% Similarity=-0.070 Sum_probs=68.6
Q ss_pred HHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHH
Q 042372 206 FLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTL 285 (402)
Q Consensus 206 ~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (402)
..+......+.+++++.+.|+++.|+.+.++.....+....+... + . ..........
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~---------------------N-~-y~~yfssall 112 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP---------------------N-S-YYLYFSSALL 112 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc---------------------c-h-HHHHHHHHHh
Confidence 334444555666788999999999999999976665555444442 2 1 2333333333
Q ss_pred HHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHH
Q 042372 286 FFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY 333 (402)
Q Consensus 286 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 333 (402)
+++....+...-.|.+|....+.+.+-.++.-.+...+.++|......
T Consensus 113 G~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 113 GFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred hhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence 333333333445678999999999999999888888888877654433
No 285
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=90.96 E-value=0.83 Score=39.22 Aligned_cols=25 Identities=16% Similarity=-0.105 Sum_probs=17.6
Q ss_pred hhcccchhhhhhccccchhHHHHHH
Q 042372 212 ATVPGYWFTVFLIDRIGRFIIQLGG 236 (402)
Q Consensus 212 ~~~~g~~~~g~l~dr~grr~~~~~~ 236 (402)
..++...+.|-+.||.|||+.-+.-
T Consensus 84 SsmLFGtivgSLaDkqGRKracvty 108 (454)
T KOG4332|consen 84 SSMLFGTIVGSLADKQGRKRACVTY 108 (454)
T ss_pred hHHHHHHHHHHHHhhhccccceeee
Confidence 3344445678899999999875544
No 286
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=89.40 E-value=4.5 Score=38.15 Aligned_cols=19 Identities=21% Similarity=0.565 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 042372 346 IIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~ 364 (402)
|.+..++.+++++....++
T Consensus 178 F~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 178 FGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444444445555444443
No 287
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=89.30 E-value=1.5 Score=37.60 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=46.2
Q ss_pred HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHH
Q 042372 7 VIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALT 86 (402)
Q Consensus 7 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~ 86 (402)
....+.+| ++||++.++.-...+++..+-..+...+. +...-+..+++...+.++.
T Consensus 119 vt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f-----------------------~~~~~~fll~la~~~~~v~ 174 (250)
T PF06813_consen 119 VTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF-----------------------GDDPSSFLLFLAVLPAVVC 174 (250)
T ss_pred HHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc-----------------------CCChHHHHHHHHHHHHHHH
Confidence 34556776 58999999999999998887776666654 2233556666666677766
Q ss_pred HHHHhhcCCCc
Q 042372 87 YYWRMKMPETA 97 (402)
Q Consensus 87 ~~~~~~lpesp 97 (402)
++..++++.-|
T Consensus 175 l~~~~~vr~~~ 185 (250)
T PF06813_consen 175 LVAMFFVRPVP 185 (250)
T ss_pred HHHhhheeccC
Confidence 66666665443
No 288
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=87.72 E-value=0.93 Score=41.75 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=50.9
Q ss_pred chhHHhhhhcccc---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 4 LSAVIMSEYANKR---TRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 4 ~~~~~i~e~~~~~---~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
....+.+|.++++ +|.+...++..+.++|..++..+..++. ++.||.+.|.+.+
T Consensus 53 ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~-----------------------~~~~~~~~f~i~~ 109 (372)
T PF00854_consen 53 NISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQ-----------------------QNYGWFLGFGIPA 109 (372)
T ss_dssp HHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHH-----------------------HCS-HHHHHHHHH
T ss_pred cHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhc-----------------------cccchhhhhhHHH
Confidence 4567778888765 4666777888999999999998888886 7789999999988
Q ss_pred HHHHHHHHHHhh
Q 042372 81 VPAALTYYWRMK 92 (402)
Q Consensus 81 i~~~~~~~~~~~ 92 (402)
+..+++++..+.
T Consensus 110 ~~~~~~~~~f~~ 121 (372)
T PF00854_consen 110 IGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 877776665443
No 289
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=86.28 E-value=20 Score=30.57 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=17.4
Q ss_pred HhhhcccchhhhhhccccchhHHHHHHHH
Q 042372 210 LFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 210 ~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
.++..+..+.+-+++.|+.-|++.+++..
T Consensus 250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi 278 (294)
T KOG2881|consen 250 ALCTGLAVIGGKYLASKISVRTVTLIGGI 278 (294)
T ss_pred HHHHHHHHhhhHHHhhhheeEEEEEecch
Confidence 33444444445567788887777776643
No 290
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=83.63 E-value=47 Score=32.64 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=32.0
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG 338 (402)
Q Consensus 301 ~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 338 (402)
-+-+|++.|+.+.++......+|..++..+........
T Consensus 484 Y~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 484 YSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35679999999999999999999999998887665544
No 291
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=81.50 E-value=36 Score=29.72 Aligned_cols=99 Identities=13% Similarity=0.013 Sum_probs=48.7
Q ss_pred HHHHHHhhhcccchhhhhhccccchh--HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRF--IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG 282 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (402)
++....++.++|+-+..++..|-..| ..+.+.+++.++...+...... ..+. ++ +.. .-.+.++
T Consensus 287 iFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-vsP~-ke-----------s~~-~s~i~F~ 352 (454)
T KOG4332|consen 287 IFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-VSPS-KE-----------SPS-ESLIGFC 352 (454)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-cCCC-cC-----------Cch-HHHHHHH
Confidence 56666777787777776666554332 4455555554444433333322 2111 11 111 1122222
Q ss_pred HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372 283 LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
.+-.. ..-..|...-+=....|.+.|++.+.+...
T Consensus 353 ~~E~c-vGlfwPSimkmRsqyIPEearstimNfFRv 387 (454)
T KOG4332|consen 353 LFEAC-VGLFWPSIMKMRSQYIPEEARSTIMNFFRV 387 (454)
T ss_pred HHHHH-HhhcchHHHHHHHhhCCHHHHhhhhhheec
Confidence 22222 223345555556778899999876555443
No 292
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=75.54 E-value=7.4 Score=33.78 Aligned_cols=63 Identities=19% Similarity=0.405 Sum_probs=47.1
Q ss_pred CchhHHhhhhccc-cchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 3 PLSAVIMSEYANK-RTRGAFIAAVFA-MQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 3 ~~~~~~i~e~~~~-~~rg~~~~~~~~-~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
|...+++.|+.|+ ++|+...+.... ...+|.++++.+++.+... ...+||..|.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~ 171 (338)
T COG0477 113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---------------------LLWGWRAAFLLAA 171 (338)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HhcchHHHHHHHH
Confidence 5567889999988 789999998888 5888999999877777631 3357999777666
Q ss_pred HHHHHH
Q 042372 81 VPAALT 86 (402)
Q Consensus 81 i~~~~~ 86 (402)
+.....
T Consensus 172 ~~~~~~ 177 (338)
T COG0477 172 LLGLLL 177 (338)
T ss_pred HHHHHH
Confidence 555443
No 293
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=72.90 E-value=1 Score=38.29 Aligned_cols=21 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcccCCC
Q 042372 348 ALAVVNFLGFLCSFMVPETNG 368 (402)
Q Consensus 348 ~~~~~~~~~~~~~~~l~et~~ 368 (402)
++..+.++++++++++.+++.
T Consensus 170 L~WL~LFlaiLIWlY~H~~~~ 190 (381)
T PF05297_consen 170 LYWLLLFLAILIWLYVHDQRH 190 (381)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCC
Confidence 444445556666666666553
No 294
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=71.05 E-value=65 Score=28.84 Aligned_cols=34 Identities=6% Similarity=-0.017 Sum_probs=24.1
Q ss_pred ecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHH
Q 042372 300 PAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY 333 (402)
Q Consensus 300 ~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 333 (402)
+.+-.+++.|-.+++.....-.+|..++.++.-.
T Consensus 367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred HhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 3444567889999988888877777766655443
No 295
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=69.19 E-value=59 Score=28.06 Aligned_cols=26 Identities=4% Similarity=0.042 Sum_probs=14.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhH
Q 042372 306 ARLRSTCHGISAAAGKAGAIVGAFGV 331 (402)
Q Consensus 306 ~~~r~~~~~~~~~~~~~g~~i~~~~~ 331 (402)
+-.|..+.|+...+....+.+.....
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~ 99 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWAS 99 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34566666766666665555444443
No 296
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=68.27 E-value=10 Score=29.58 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=18.3
Q ss_pred eeecccCchhhhhhhHHHHHHHHHHHHH
Q 042372 298 IVPAELFPARLRSTCHGISAAAGKAGAI 325 (402)
Q Consensus 298 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~ 325 (402)
-..+-.-.++..|+..|+-.+-.+++.+
T Consensus 117 GilSaSWD~~r~GSllG~~e~~~N~~r~ 144 (153)
T PF11947_consen 117 GILSASWDPEREGSLLGWEEFKRNWGRM 144 (153)
T ss_pred hhcccccCCCCCCCcccHHHHHHhHHHH
Confidence 3334444556678888888877776554
No 297
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.23 E-value=39 Score=24.46 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=27.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 042372 306 ARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD 339 (402)
Q Consensus 306 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 339 (402)
++.++.+.++-...-.+++++.....||+.+++.
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667888888888888888888888899988763
No 298
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=66.89 E-value=29 Score=21.90 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=20.2
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHhhcCCC
Q 042372 68 GDYLWRIVLMFGAVPAALTYYWRMKMPET 96 (402)
Q Consensus 68 ~~~~Wr~~f~~~~i~~~~~~~~~~~lpes 96 (402)
..++.+...+++.+.+++...+...+|+.
T Consensus 27 ~~~n~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 27 VTYNFTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45667787788888877776665566654
No 299
>COG1288 Predicted membrane protein [Function unknown]
Probab=66.88 E-value=66 Score=30.03 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=19.4
Q ss_pred CCcchhHHHHHhhHHHHHHHHHH--hhcCCCchh
Q 042372 68 GDYLWRIVLMFGAVPAALTYYWR--MKMPETARY 99 (402)
Q Consensus 68 ~~~~Wr~~f~~~~i~~~~~~~~~--~~lpesp~~ 99 (402)
+-.+||.+.++......+..+.+ ..+++.|..
T Consensus 214 sG~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~ 247 (481)
T COG1288 214 SGMGLRIVVWVVFTLISIIYVYWYASKVKKDPTL 247 (481)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45689999988665544433332 236666653
No 300
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=66.87 E-value=75 Score=30.88 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=13.1
Q ss_pred HHHHHHhhhcccchhhhhhccccch
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGR 229 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~gr 229 (402)
......+.+.+++.+++++-..++.
T Consensus 302 ~i~~y~~~~~iaGy~S~~~yk~~~g 326 (521)
T PF02990_consen 302 AIILYALTSFIAGYVSARLYKSFGG 326 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 3344445555555556655555543
No 301
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=65.08 E-value=23 Score=32.70 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.9
Q ss_pred chhhhhh
Q 042372 305 PARLRST 311 (402)
Q Consensus 305 p~~~r~~ 311 (402)
|.+.|+.
T Consensus 90 ~~~~~~~ 96 (385)
T PF03547_consen 90 PKEWRGV 96 (385)
T ss_pred CcccceE
Confidence 4444443
No 302
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=62.85 E-value=20 Score=26.02 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=27.4
Q ss_pred cccccccccCCCCCcchhHHHHHhhHHHHH-HHHHHhhcCCCc
Q 042372 56 FNRNHVLSAQPQGDYLWRIVLMFGAVPAAL-TYYWRMKMPETA 97 (402)
Q Consensus 56 ~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~-~~~~~~~lpesp 97 (402)
++.++..-++..+..+|+.+|+++..++++ +.+.+.+.||+.
T Consensus 43 ~~~~p~~~G~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 43 FGKNPPSPGEKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred cCCCCCcCCCcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 444554445556778999999987666554 445555678864
No 303
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.40 E-value=13 Score=26.83 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=15.7
Q ss_pred hhhhhcccc-chhHHHHHHHHHHHHH
Q 042372 219 FTVFLIDRI-GRFIIQLGGFLLMSIC 243 (402)
Q Consensus 219 ~~g~l~dr~-grr~~~~~~~~~~~~~ 243 (402)
..||+.||+ |.++..++.+++...+
T Consensus 61 ~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 61 GIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 468999997 5666655554444433
No 304
>PRK10263 DNA translocase FtsK; Provisional
Probab=56.88 E-value=73 Score=34.39 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=6.0
Q ss_pred hcccchhhhhhccccc
Q 042372 213 TVPGYWFTVFLIDRIG 228 (402)
Q Consensus 213 ~~~g~~~~g~l~dr~g 228 (402)
+.+|..+...+..-+|
T Consensus 65 GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 65 GMPGAWLADTLFFIFG 80 (1355)
T ss_pred chHHHHHHHHHHHHHh
Confidence 3333333333333334
No 305
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=55.27 E-value=13 Score=32.94 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372 281 YGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS 360 (402)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (402)
+++.....+.|.+-+.+.-.+..+|...-+ +..... ..++.+|..-...+.+..+...+...+++..+.++-.+.+
T Consensus 120 ~GV~~aSissGlGEiTFL~lss~Y~~~~i~---~WSSGT-GgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~y 195 (409)
T KOG3880|consen 120 LGVVFASISSGLGEITFLALSSRYPSIVIA---GWSSGT-GGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAY 195 (409)
T ss_pred hhhhhhhhcCCcceeehhhhhccCCCceec---cccCCC-CcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 333333334555555554445555543221 111111 1223455555555554332256677777777666555555
Q ss_pred hhc---ccCCC
Q 042372 361 FMV---PETNG 368 (402)
Q Consensus 361 ~~l---~et~~ 368 (402)
+++ ||+..
T Consensus 196 f~lL~~pes~~ 206 (409)
T KOG3880|consen 196 FFLLKSPESVY 206 (409)
T ss_pred HheeCCCcccc
Confidence 543 55443
No 306
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=55.10 E-value=1.6e+02 Score=26.63 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=17.6
Q ss_pred ccchhhhhhccccchhHHHHHHHH
Q 042372 215 PGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 215 ~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
..+++.+.+++++|-|+.+.++..
T Consensus 73 ~s~m~~~~~Ir~~g~K~tm~lav~ 96 (390)
T KOG3097|consen 73 DSSMFMPLLIRFLGTKWTMVLAVF 96 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334455689999999999887643
No 307
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=51.26 E-value=2.1e+02 Score=26.63 Aligned_cols=50 Identities=4% Similarity=0.014 Sum_probs=30.2
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHH
Q 042372 305 PARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLG 356 (402)
Q Consensus 305 p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (402)
++..-....+.....-.....+.|.+.|.+.... +.+..-..+++..+++
T Consensus 169 s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfv--sl~~~~g~f~~w~~vs 218 (503)
T KOG2601|consen 169 SPSVLTNMNATIRGIDQSTNLLAPVITGLIITFV--SLRASAGTFAAWALVS 218 (503)
T ss_pred CHHHHhhcchhhhhhhhhhhchhhhhhcccceee--chhhhhhhhHHHHHHH
Confidence 3333333335555555567788898888887766 5565555555555553
No 308
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=51.05 E-value=19 Score=32.63 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=47.9
Q ss_pred cceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372 295 TTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN 367 (402)
Q Consensus 295 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~ 367 (402)
..++|+-+..+++.+-++.|.+....-.|...|....-.+......++...-.+......++.++.+++|..+
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~ 186 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVK 186 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence 3456667778888888888988888877777777766666554322343333444445555666667777655
No 309
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=47.16 E-value=1.9e+02 Score=25.02 Aligned_cols=26 Identities=4% Similarity=-0.179 Sum_probs=17.0
Q ss_pred chhHHHHHhhHHHHHHHHHHhhcCCC
Q 042372 71 LWRIVLMFGAVPAALTYYWRMKMPET 96 (402)
Q Consensus 71 ~Wr~~f~~~~i~~~~~~~~~~~lpes 96 (402)
...++-+++.+..++...++.+++.+
T Consensus 113 ~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 113 SSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred chhHHHHHHHHHHHHHHHheeeecCC
Confidence 45666677777777777666666433
No 310
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=46.23 E-value=27 Score=30.17 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=31.6
Q ss_pred HHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhh---------hccccchhH
Q 042372 171 TINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVF---------LIDRIGRFI 231 (402)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~---------l~dr~grr~ 231 (402)
....|+-.++++.|.++....+ ...+..+...+..++.|. ..||+|||+
T Consensus 35 cWFTYlllfltqiglsp~~~Am------------lML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~ 92 (412)
T KOG4830|consen 35 CWFTYLLLFLTQIGLSPSSRAM------------LMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRM 92 (412)
T ss_pred HHHHHHHHHHHHhcCCcchhHH------------HHHhhHHHHHHhcccccccccccccHHHhhhhccee
Confidence 3344555567778888876554 556666666666666653 457899985
No 311
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=44.39 E-value=45 Score=21.07 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=18.0
Q ss_pred cchhHHHHHhhHHHHHHHHHHhh
Q 042372 70 YLWRIVLMFGAVPAALTYYWRMK 92 (402)
Q Consensus 70 ~~Wr~~f~~~~i~~~~~~~~~~~ 92 (402)
.|||...+++++.+++.+.++..
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi 25 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPI 25 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhh
Confidence 47999999999998887665433
No 312
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=43.78 E-value=98 Score=21.75 Aligned_cols=34 Identities=6% Similarity=0.172 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 042372 149 QKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA 182 (402)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (402)
+++++..+.+....+....++.....+.|.++..
T Consensus 12 r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~ 45 (91)
T PF04341_consen 12 RRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMAT 45 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcC
Confidence 3333455556666666666666777777877765
No 313
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=41.29 E-value=1.3e+02 Score=21.59 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 042372 24 AVFAMQGMGILFAGVISLIFS 44 (402)
Q Consensus 24 ~~~~~~~lG~~~~~~~~~~l~ 44 (402)
.+.....+..++|..+|.++-
T Consensus 47 ~IG~~~v~pil~G~~lG~WLD 67 (100)
T TIGR02230 47 LIGWSVAIPTLLGVAVGIWLD 67 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555554
No 314
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=40.44 E-value=3e+02 Score=25.34 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhh-hcCCCchhhhHHHHHHHHHHHH
Q 042372 316 SAAAGKAGAIVGAFGVQYYTQ-KGDKQIKQSIIALAVVNFLGFL 358 (402)
Q Consensus 316 ~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 358 (402)
....-++|+..+.+..+++.- .. |....-.+.+.+.+++.+
T Consensus 144 vl~~DYLGal~~gLl~p~lllP~L--Gl~rta~laG~~Nl~aAv 185 (508)
T COG4262 144 VLTLDYLGALAGGLLWPFLLLPRL--GLVRTAALAGLCNLAAAV 185 (508)
T ss_pred hhhhHhhhhhhHHHHHHHHHhhhh--ccHHHHHHHHHHHHHHHH
Confidence 334466777777666655432 22 333333444555555443
No 315
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=38.49 E-value=1.3e+02 Score=27.16 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=5.0
Q ss_pred hhhhhccccch
Q 042372 219 FTVFLIDRIGR 229 (402)
Q Consensus 219 ~~g~l~dr~gr 229 (402)
.--++.++..+
T Consensus 186 ~~E~~v~~~~~ 196 (334)
T PF06027_consen 186 LEEKLVKKAPR 196 (334)
T ss_pred HHHHhcccCCH
Confidence 34445554443
No 316
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=38.44 E-value=3.2e+02 Score=25.15 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=18.6
Q ss_pred hhccccchhHHHHH-HHHHHHHHHHHHHHHHH
Q 042372 11 EYANKRTRGAFIAA-VFAMQGMGILFAGVISL 41 (402)
Q Consensus 11 e~~~~~~rg~~~~~-~~~~~~lG~~~~~~~~~ 41 (402)
|+.|.++ ....+. +..-.+.|.++||.++.
T Consensus 48 DYvP~~~-~vlfghhf~sIAGaGPI~GPi~aa 78 (376)
T PF02554_consen 48 DYVPTNK-WVLFGHHFASIAGAGPIVGPILAA 78 (376)
T ss_pred CCCCCch-HHhhHHHHHHHhccccchHHHHHH
Confidence 5555544 445553 34456788888888883
No 317
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=36.63 E-value=1.2e+02 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=16.2
Q ss_pred cccCchhhhhhhHHHHHHHHH
Q 042372 301 AELFPARLRSTCHGISAAAGK 321 (402)
Q Consensus 301 ~e~~p~~~r~~~~~~~~~~~~ 321 (402)
.|++|+..|....+..+...+
T Consensus 61 kdi~P~~~R~~i~~~~~~~~~ 81 (137)
T PF04281_consen 61 KDIFPPSVRNWISSTVSTTSS 81 (137)
T ss_pred hccCCHHHHHHHHHHHHHHHH
Confidence 699999999987776665544
No 318
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=35.85 E-value=1.4e+02 Score=22.89 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=17.9
Q ss_pred HhhhhccccchhHHHHHHHHHHH
Q 042372 8 IMSEYANKRTRGAFIAAVFAMQG 30 (402)
Q Consensus 8 ~i~e~~~~~~rg~~~~~~~~~~~ 30 (402)
-+.|++|++.|....+.+.....
T Consensus 59 aLkdi~P~~~R~~i~~~~~~~~~ 81 (137)
T PF04281_consen 59 ALKDIFPPSVRNWISSTVSTTSS 81 (137)
T ss_pred HHhccCCHHHHHHHHHHHHHHHH
Confidence 36899999999988887765443
No 319
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=34.55 E-value=85 Score=20.16 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=17.5
Q ss_pred CCcchhHHHHHhhHHH---HH-HHHHHhhcCCCc
Q 042372 68 GDYLWRIVLMFGAVPA---AL-TYYWRMKMPETA 97 (402)
Q Consensus 68 ~~~~Wr~~f~~~~i~~---~~-~~~~~~~lpesp 97 (402)
+..-+|..|.+..+.. ++ -+++++.+|+.|
T Consensus 27 d~~~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 27 DPTLVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 3445788887755532 22 234455678765
No 320
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=34.08 E-value=1.7e+02 Score=21.03 Aligned_cols=18 Identities=6% Similarity=-0.180 Sum_probs=8.9
Q ss_pred hhhhcc-ccchhHHHHHHH
Q 042372 220 TVFLID-RIGRFIIQLGGF 237 (402)
Q Consensus 220 ~g~l~d-r~grr~~~~~~~ 237 (402)
.|...| +++-++.+.+.+
T Consensus 62 lG~WLD~~~~t~~~~tl~~ 80 (100)
T TIGR02230 62 VGIWLDRHYPSPFSWTLTM 80 (100)
T ss_pred HHHHHHhhcCCCcHHHHHH
Confidence 344445 566655444443
No 321
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=32.52 E-value=1.7e+02 Score=20.29 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 042372 22 IAAVFAMQGMGILFAGVISLIFS 44 (402)
Q Consensus 22 ~~~~~~~~~lG~~~~~~~~~~l~ 44 (402)
.+...+...+|.++|.+....+.
T Consensus 29 ag~lasaNy~GYL~GAl~~~~~~ 51 (85)
T PF06779_consen 29 AGWLASANYLGYLVGALLASRLP 51 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888888888877664
No 322
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=31.53 E-value=1.4e+02 Score=23.00 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=17.6
Q ss_pred HhhhhccccchhHHHHHHHHHHH
Q 042372 8 IMSEYANKRTRGAFIAAVFAMQG 30 (402)
Q Consensus 8 ~i~e~~~~~~rg~~~~~~~~~~~ 30 (402)
-+.|++||..|..+.+.+.....
T Consensus 57 ALkDm~Pp~~R~~i~~~~s~t~s 79 (145)
T TIGR00986 57 ALKDIVPPTTRGWIYHKYSTTTN 79 (145)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHH
Confidence 46899999999988876655433
No 323
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=30.30 E-value=1.3e+02 Score=23.27 Aligned_cols=52 Identities=8% Similarity=-0.037 Sum_probs=28.9
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 301 ~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.|++|+..|....+..........- .+.. +-+..+++..-..++++.+.+-+
T Consensus 59 kDm~Pp~~R~~i~~~~s~t~s~~ks--------~~sf---sGkalWivsTSaLLLgVPlala~ 110 (145)
T TIGR00986 59 KDIVPPTTRGWIYHKYSTTTNFVKS--------TLSF---AGRAAWAVSTSALLLGVPFAISF 110 (145)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHH--------HHHh---cCcchhhhHHHHHHHHHHHHHHH
Confidence 6899999998877666655433221 1111 22344445455555555555544
No 324
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=29.34 E-value=2.6e+02 Score=26.76 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhcCC
Q 042372 81 VPAALTYYWRMKMPE 95 (402)
Q Consensus 81 i~~~~~~~~~~~lpe 95 (402)
+..++..++.++.|.
T Consensus 10 iiiv~~~ilt~~iPa 24 (465)
T PF03606_consen 10 IIIVFAAILTWIIPA 24 (465)
T ss_pred HHHHHHHHHHhcCcc
Confidence 334444455555564
No 325
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=28.80 E-value=3.4e+02 Score=27.72 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=14.9
Q ss_pred HHHHHHhhhcccchhhhhhcccc
Q 042372 205 MFLVALFATVPGYWFTVFLIDRI 227 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~ 227 (402)
...+..+.++.+.++.-.+.|+.
T Consensus 162 ~sl~l~i~~l~~p~~~q~viD~V 184 (709)
T COG2274 162 ASLLLQLLALATPLFSQIVIDKV 184 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555566666778888986
No 326
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.53 E-value=30 Score=26.29 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=7.1
Q ss_pred hHHHHHhhHHHHHHH
Q 042372 73 RIVLMFGAVPAALTY 87 (402)
Q Consensus 73 r~~f~~~~i~~~~~~ 87 (402)
||++++..+++++++
T Consensus 1 RW~l~~iii~~i~l~ 15 (130)
T PF12273_consen 1 RWVLFAIIIVAILLF 15 (130)
T ss_pred CeeeHHHHHHHHHHH
Confidence 455555444444433
No 327
>COG3817 Predicted membrane protein [Function unknown]
Probab=27.03 E-value=92 Score=26.57 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372 281 YGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA 322 (402)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 322 (402)
..+...+...|..-...-+++|+.|...|=.+...+.....+
T Consensus 175 aaLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMal 216 (313)
T COG3817 175 AALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMAL 216 (313)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence 334444555566555666778999999887776655444333
No 328
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.86 E-value=49 Score=24.79 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=4.1
Q ss_pred HHHhhcccCCCC
Q 042372 358 LCSFMVPETNGL 369 (402)
Q Consensus 358 ~~~~~l~et~~~ 369 (402)
++.|++++.+++
T Consensus 83 li~y~irR~~Kk 94 (122)
T PF01102_consen 83 LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHS--
T ss_pred HHHHHHHHHhcc
Confidence 334444433333
No 329
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=25.25 E-value=4.8e+02 Score=23.05 Aligned_cols=25 Identities=12% Similarity=-0.075 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042372 20 AFIAAVFAMQGMGILFAGVISLIFS 44 (402)
Q Consensus 20 ~~~~~~~~~~~lG~~~~~~~~~~l~ 44 (402)
+....+..+...|.+++-.++..+.
T Consensus 36 ~~~~~V~~G~~~gl~~s~~~a~~~~ 60 (283)
T TIGR00145 36 RLRGWVWVGVLAGFAACLAIGIGVI 60 (283)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666655555554
No 330
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=25.02 E-value=1.6e+02 Score=19.06 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=16.2
Q ss_pred HHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
......+...+|..++.++.++++++.-.+
T Consensus 29 ig~~~~~~~~~G~~~G~~~~~~~~~~~~~i 58 (67)
T PF02659_consen 29 IGIFQFIMPLLGLLLGRRLGRFIGSYAEWI 58 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555556666666666553333
No 331
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=24.96 E-value=2.9e+02 Score=27.18 Aligned_cols=32 Identities=19% Similarity=0.017 Sum_probs=19.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042372 14 NKRTRGAFIAAVFAMQGMGILFAGVISLIFSG 45 (402)
Q Consensus 14 ~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~ 45 (402)
|-.+|..-+|.++....+=.+++-+..-.+..
T Consensus 523 Pfp~r~~~IG~Wq~~l~~lSvls~vtncaLi~ 554 (647)
T KOG2513|consen 523 PFPRRVANIGAWQNALELLSVLSCVTNCALIG 554 (647)
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHhHHHHh
Confidence 33456677777776666656666555555543
No 332
>PHA02650 hypothetical protein; Provisional
Probab=24.03 E-value=1.2e+02 Score=20.54 Aligned_cols=10 Identities=0% Similarity=-0.061 Sum_probs=5.3
Q ss_pred CcchhHHHHH
Q 042372 69 DYLWRIVLMF 78 (402)
Q Consensus 69 ~~~Wr~~f~~ 78 (402)
..+|.+.+++
T Consensus 46 ~~~~~~~ii~ 55 (81)
T PHA02650 46 WFNGQNFIFL 55 (81)
T ss_pred CchHHHHHHH
Confidence 4456555554
No 333
>PRK15015 carbon starvation protein A; Provisional
Probab=23.20 E-value=7.8e+02 Score=24.83 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=22.1
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042372 11 EYANKRTRGAFIAAVFAMQGMGILFAGVISL 41 (402)
Q Consensus 11 e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~ 41 (402)
|+.|.+++-...-=+.+-.+.|.++||.++.
T Consensus 79 DYvPt~k~VLfGHHFasIAGAGPivGPvlAa 109 (701)
T PRK15015 79 DYVPTDKKVLFGHHFAAIAGAGPLVGPVLAA 109 (701)
T ss_pred CcCcCCccchhHHHHHHHhccCccHHHHHHH
Confidence 6677776655555556667788888888875
No 334
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=22.21 E-value=1.4e+02 Score=15.83 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=3.4
Q ss_pred HHhhcCCCch
Q 042372 89 WRMKMPETAR 98 (402)
Q Consensus 89 ~~~~lpesp~ 98 (402)
...+..|.|+
T Consensus 19 fAI~FRePPr 28 (29)
T PF01405_consen 19 FAIFFREPPR 28 (29)
T ss_dssp HHHHSS----
T ss_pred hhhhccCCCC
Confidence 3446788775
No 335
>PF14851 FAM176: FAM176 family
Probab=22.04 E-value=2.7e+02 Score=21.93 Aligned_cols=7 Identities=14% Similarity=0.107 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 042372 346 IIALAVV 352 (402)
Q Consensus 346 ~~~~~~~ 352 (402)
+++.+++
T Consensus 25 YFv~gVC 31 (153)
T PF14851_consen 25 YFVSGVC 31 (153)
T ss_pred HHHHHHH
Confidence 3333443
No 336
>PRK03612 spermidine synthase; Provisional
Probab=21.30 E-value=2.1e+02 Score=27.86 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042372 18 RGAFIAAVFAMQGMGILFAGVISLIFS 44 (402)
Q Consensus 18 rg~~~~~~~~~~~lG~~~~~~~~~~l~ 44 (402)
-|...|-......+|.++|.++.+++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 456677888888999999998877765
No 337
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=21.21 E-value=1.3e+02 Score=20.28 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=8.7
Q ss_pred chhhhHHHHHHHHHHHHHHhh
Q 042372 342 IKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~ 362 (402)
...+|.++.++.++..++..+
T Consensus 12 m~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 12 MGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333
No 338
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=20.88 E-value=2.4e+02 Score=23.11 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=14.8
Q ss_pred HHHHHHhhhcccchhhhhhccccchh
Q 042372 205 MFLVALFATVPGYWFTVFLIDRIGRF 230 (402)
Q Consensus 205 ~~~~~~i~~~~g~~~~g~l~dr~grr 230 (402)
...+..+..++++++++++..|+=||
T Consensus 160 ~~~~~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 160 WAVIMIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666665544
No 339
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=20.22 E-value=1.6e+02 Score=21.12 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=11.8
Q ss_pred CCcchhHHHHHhhHHHHH
Q 042372 68 GDYLWRIVLMFGAVPAAL 85 (402)
Q Consensus 68 ~~~~Wr~~f~~~~i~~~~ 85 (402)
+..|.-|.|+++.+.+.+
T Consensus 11 ~~~g~sW~~LVGVv~~al 28 (102)
T PF15176_consen 11 GEGGRSWPFLVGVVVTAL 28 (102)
T ss_pred CCCCcccHhHHHHHHHHH
Confidence 344777888887666544
Done!