Query 042372
Match_columns 402
No_of_seqs 450 out of 1440
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 09:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5E-33 1.7E-37 264.3 18.0 331 2-379 144-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.3E-24 4.6E-29 203.9 15.5 290 3-364 138-434 (451)
3 3o7q_A L-fucose-proton symport 99.9 4.2E-20 1.4E-24 172.6 22.7 284 3-362 136-431 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.8 2.2E-19 7.6E-24 170.3 14.9 303 3-367 127-476 (491)
5 2gfp_A EMRD, multidrug resista 99.8 3.1E-19 1.1E-23 163.2 6.4 252 3-348 107-361 (375)
6 2cfq_A Lactose permease; trans 99.7 3.4E-18 1.2E-22 158.6 8.7 279 8-370 124-407 (417)
7 1pw4_A Glycerol-3-phosphate tr 99.6 2.7E-15 9.2E-20 140.4 16.3 185 151-368 26-212 (451)
8 2xut_A Proton/peptide symporte 99.6 1.1E-15 3.7E-20 146.1 8.0 82 289-370 419-510 (524)
9 3o7q_A L-fucose-proton symport 99.6 2.3E-14 7.9E-19 133.5 16.6 184 153-368 26-236 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.6 2.7E-14 9.4E-19 135.2 14.6 174 154-363 14-196 (491)
11 2gfp_A EMRD, multidrug resista 99.5 8E-14 2.7E-18 127.2 9.5 174 160-369 7-181 (375)
12 2xut_A Proton/peptide symporte 99.4 1.5E-12 5.2E-17 124.2 14.6 174 155-363 14-198 (524)
13 4gc0_A D-xylose-proton symport 99.2 3.4E-11 1.2E-15 113.9 11.6 161 203-367 58-224 (491)
14 2cfq_A Lactose permease; trans 98.9 1.5E-10 5.2E-15 107.0 -1.5 173 158-363 12-187 (417)
15 2g9p_A Antimicrobial peptide l 33.6 9.7 0.00033 17.8 0.1 14 219-232 2-15 (26)
16 3arc_T Photosystem II reaction 23.8 87 0.003 16.3 3.3 12 88-99 18-29 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5e-33 Score=264.34 Aligned_cols=331 Identities=17% Similarity=0.179 Sum_probs=232.3
Q ss_pred CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++++++|++|++|+++|++..++.+.+..+|.++++.++..+....... ......||+++.+..+
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS---------------WLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT---------------TTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc---------------cccchhhHHHhhhhhh
Confidence 3567899999999999999999999999999999999988876432211 2245689999999999
Q ss_pred HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
+.++.++..+++||||+|+.. +++.+++.+.+++..+.+..++....... .....++........+.++..+.....
T Consensus 209 ~~~~~~~~~~~~peSp~~L~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4gc0_A 209 PALLFLMLLYTVPESPRWLMS-RGKQEQAEGILRKIMGNTLATQAVQEIKH--SLDHGRKTGGRLLMFGVGVIVIGVMLS 285 (491)
T ss_dssp HHHHHHHHGGGSCCCHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTTHHHHSCCTHHHHHHHHH
T ss_pred hhhhhhhhhhcCCCChHHHHH-cCchhHHHHhHHHhcCCchhHHHHHHHHH--HHHhhhhhhhHHHHhcccHHHHHHHHH
Confidence 999999999999999999865 56667776666665543322111100000 000000000111111222344455555
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372 162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
.+.+..+.+....|.+.+.+..+.+...... ...+..+..+++.++++++.||+|||+.++.+..+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~ 353 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIALL------------QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA 353 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccchhh------------HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHH
Confidence 5566667778888888888887776654332 4555667777888899999999999999999988888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372 242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 321 (402)
++++.+....... ......+....+...++..+..++.+.+.+|++|++.|+++.|+.+.+++
T Consensus 354 ~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 354 IGMFSLGTAFYTQ-----------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW 416 (491)
T ss_dssp HHHHHHHHHHHTT-----------------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-----------------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence 8777666543321 12222333333344444667777888999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcC----CCchhhhHHHHHHHHHHHHHHh-hcccCCCCCcccccchhh
Q 042372 322 AGAIVGAFGVQYYTQKGD----KQIKQSIIALAVVNFLGFLCSF-MVPETNGLSLEELSGEDK 379 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~l~et~~~~~~~~~~~~~ 379 (402)
+++++++.+++.+.+... .++...|++++++++++.++.+ ++||||++++||+++.-+
T Consensus 417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 999999988877654210 0455678888888888887776 569999999999887643
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=1.3e-24 Score=203.89 Aligned_cols=290 Identities=15% Similarity=0.155 Sum_probs=195.5
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcc-hhHHHHHhhH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYL-WRIVLMFGAV 81 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Wr~~f~~~~i 81 (402)
+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. ...+ ||+.|++.++
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~g~w~~~f~~~~~ 194 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-----------------------AWFNDWHAALYMPAF 194 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH-----------------------HHTCCSTTCTHHHHH
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhccHHHHHHHHHH
Confidence 566789999999999999999999999999999999998876 4456 9999999887
Q ss_pred HHHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372 82 PAALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
+.++. ++..+++||+|+... ..+.++.. .+.++ +.++.++++....+.......++ +.++...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 259 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQSCG--LPPIEEYK--------NDYPD---DYNEKAEQELTAKQIFMQYVLPN--KLLWYIAI 259 (451)
T ss_dssp HHHHHHHHHHHHCCCSSTTTC--CCSCTTTC--------CC----------------CCTHHHHHHTSSC--HHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHhhcC--CCChhhhc--------ccccc---cchhhhhcccccccchHHHHHcC--HHHHHHHH
Confidence 77654 455677899887521 11111000 00000 00000001111111111222221 24555555
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chhHHHHHHH
Q 042372 161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRFIIQLGGF 237 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~ 237 (402)
..++.....+....+.|.++++ .|++..+.+. ......++.+++.++.+++.||+ |||+.+.++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~ 327 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW------------AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 6666666777888899999988 7888876544 67777888899999999999999 9999887776
Q ss_pred HHHH-HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372 238 LLMS-ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
.+.. ++.+++.. .. . .+. ..........+++..+..+....+..|.+|++.|+++.|+.
T Consensus 328 ~~~~~~~~~~~~~----~~-~--------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 328 MTLVTIATIVYWM----NP-A--------------GNP-TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp HHHHHHHHHHTTS----CC-T--------------TCH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hc-c--------------cCH-HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 5544 33222211 11 0 122 22222222333333444455667889999999999999999
Q ss_pred HHHHHH-HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372 317 AAAGKA-GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP 364 (402)
Q Consensus 317 ~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (402)
+....+ |..++|.+.+.+.+.. ++...|++.+++.+++.++.++++
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999987 888999998888888877776653
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.86 E-value=4.2e-20 Score=172.62 Aligned_cols=284 Identities=12% Similarity=-0.006 Sum_probs=178.4
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccCcccccccccccCCC------CCcchhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFS-GIFLHVYNAPAFNRNHVLSAQPQ------GDYLWRIV 75 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~Wr~~ 75 (402)
+...++++|++|+++|++++++.+.+..+|.++++.+++.+. ...... ++... ...+.+.. ...+||+.
T Consensus 136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~w~~~ 211 (438)
T 3o7q_A 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ-SQDVL---DKMSPEQLSAYKHSLVLSVQTP 211 (438)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC-CHHHH---HHSCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccc---ccCCcchhhhhhhhhhhhHHHH
Confidence 467789999999999999999999999999999999998886 211000 00000 00000000 00129999
Q ss_pred HHHhhHHHHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhH
Q 042372 76 LMFGAVPAALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGL 153 (402)
Q Consensus 76 f~~~~i~~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (402)
|++.++..++..+..++ .||+++. ++++++ .++.+...++.+++ +
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~----------------------~~~~~~~~~~~~~~-------~ 258 (438)
T 3o7q_A 212 YMIIVAIVLLVALLIMLTKFPALQSD----NHSDAK----------------------QGSFSASLSRLARI-------R 258 (438)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCTTT----CCCCSS----------------------TTSHHHHHHHHTTC-------S
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccc----cccccc----------------------ccchhhhHHHHHhC-------h
Confidence 98766665554333333 4665432 000000 00000111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhh-hhhc-CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDI-YPAT-GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI 231 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~ 231 (402)
.++......++.....+....+.|.+ +++. |++..+.+. ......++.+++.++.++++||+|||+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAAN------------YLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 33344444455555666777788888 7774 888776544 667778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372 232 IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST 311 (402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 311 (402)
.+..+.++..++.+++... ..... .... ...+++.....+..+.+..|.+|++ |+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (438)
T 3o7q_A 327 VLAAYALIAMALCLISAFA---------------------GGHVG-LIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKY 382 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------------------CHHHH-HHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred HHHHHHHHHHHHHHHHHHc---------------------CCcHH-HHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 9998887777666555442 22222 2222 2233334445567788889999977 888
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhcCCC-chhhhHHHHHHHHHHHHHHhh
Q 042372 312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-IKQSIIALAVVNFLGFLCSFM 362 (402)
Q Consensus 312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 362 (402)
+.++.. .+.+++.++|.+.+.+.+.. + ++..|++.+++.++..++.++
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAA--GNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHH--TSSGGGGHHHHHHHHHHHHHHTT
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHH
Confidence 888877 67799999999999999987 5 888888766655554444333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.81 E-value=2.2e-19 Score=170.27 Aligned_cols=303 Identities=8% Similarity=-0.022 Sum_probs=168.8
Q ss_pred CchhHHhhhhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372 3 PLSAVIMSEYANKRT--RGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~--rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
|...++++|++|+++ |+...++++.+..+|.++++.+++.+. +..+||+.|++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~g~~~~f~~~~ 183 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ-----------------------EAAGYHVAFSLAA 183 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHSCHHHHHHHHH
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH-----------------------hhhhHHHHHHHHH
Confidence 567789999999988 777888899999999999999999987 5578999999987
Q ss_pred HHHHHHHHHHhhc-CCCc----hhHhhhcCCHHHHHHHHHH---------------hhcccccccc--------------
Q 042372 81 VPAALTYYWRMKM-PETA----RYTALVEGNQKKAAVDMAK---------------VLDTDINVAT-------------- 126 (402)
Q Consensus 81 i~~~~~~~~~~~l-pesp----~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-------------- 126 (402)
+..++.++..++. |+.. +.. ..+.++++..+.... ....+.+.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (491)
T 4aps_A 184 IGMFIGLLVYYFGGKKTLDPHYLRP-TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPV 262 (491)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCSCC-SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccccccCC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHH
Confidence 7666554443322 2110 000 001122222221111 0000000000
Q ss_pred ----CCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHH
Q 042372 127 ----SAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRI 201 (402)
Q Consensus 127 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 201 (402)
...++ ++ ..+..+++....+......+.....+.....+.+.+.++ .+.+....+.
T Consensus 263 ~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 323 (491)
T 4aps_A 263 FYFAWMISS---VK-------VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSW--------- 323 (491)
T ss_dssp HHHHHHC----------------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGG---------
T ss_pred HHHHHHhhc---cc-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHH---------
Confidence 00000 00 000011111112222223333333344444555666655 4444333222
Q ss_pred HHHHHHHHHhhhcccchhhhhhccccchhHHHH-----HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHH
Q 042372 202 SKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL-----GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAW 276 (402)
Q Consensus 202 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (402)
......++.+++.++.+++.||+|||+... .+..+.+++.+++..........+ ..+.+.
T Consensus 324 ---~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 388 (491)
T 4aps_A 324 ---FQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG------------KVSPLW 388 (491)
T ss_dssp ---GTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT------------TCCTHH
T ss_pred ---HhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------CccHHH
Confidence 444555666667778899999999986544 555555555544444321111000 012222
Q ss_pred HHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHH
Q 042372 277 FMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLG 356 (402)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (402)
..+..+..+.+.....+..+.++.|.+|++.|+++.|+.+....+|.++++.+.+.+.+. ++...|.+.+++.+++
T Consensus 389 -~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 389 -LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK---SEVAYFSYFGLGSVVL 464 (491)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS---STTHHHHHTHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHH
Confidence 223333333334444567788999999999999999999999999999999998887765 6667788888887777
Q ss_pred HHHHhhc-ccCC
Q 042372 357 FLCSFMV-PETN 367 (402)
Q Consensus 357 ~~~~~~l-~et~ 367 (402)
.++.+++ ++.+
T Consensus 465 ~~~~~~~~~~~~ 476 (491)
T 4aps_A 465 GIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHHHHH
Confidence 7766655 5544
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.76 E-value=3.1e-19 Score=163.24 Aligned_cols=252 Identities=15% Similarity=0.107 Sum_probs=163.3
Q ss_pred CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +..+||+.|++.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-----------------------TMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-----------------------CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------------------HhccHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999886 556899999988877
Q ss_pred HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372 83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++..+ ..+++||+|+. . +++ ++.+++.++.++++ .++.....
T Consensus 164 ~~~~~~~~~~~~~~~~~~--~-~~~--------------------------~~~~~~~~~~~~~~-------~~~~~~~~ 207 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPV--D-APR--------------------------TRLLTSYKTLFGNS-------GFNCYLLM 207 (375)
T ss_dssp HHHHHCCCCCSSCCCSTT--T-CCC--------------------------CCTTTCSTHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCC--C-ccc--------------------------ccHHHHHHHHhcCc-------chHHHHHH
Confidence 766554 45567887643 1 110 00011112222221 33344444
Q ss_pred HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH-
Q 042372 162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL- 239 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~- 239 (402)
.+......+....+.|.++++ .|.++.+.+. ......++.+++.++.+++.||++++. ..+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~ 273 (375)
T 2gfp_A 208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSI------------LFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICC 273 (375)
T ss_dssp HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHH------------HHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 455555667777888888877 6776664443 666777888888899999999998732 222222
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
...+...+..... . ..............+++.....+....+..|.+| +.|+++.|+.+..
T Consensus 274 ~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 274 LLAGLLMWIPDWF--G----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp HHTSSSSSHHHHH--H----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh--c----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence 1111111111100 0 0111222222222223333345667778899998 8899999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHH
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIA 348 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 348 (402)
..+|..++|.+.+.+.+.. ++...+.+
T Consensus 335 ~~~g~~~~~~~~g~l~~~~--~~~~~~~~ 361 (375)
T 2gfp_A 335 QNIGSGVLASLSAMLPQTG--QGSLGLLM 361 (375)
T ss_dssp HHHHHHCCSTTCTHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC--cccHHHHH
Confidence 9999999999998887754 55555544
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.73 E-value=3.4e-18 Score=158.59 Aligned_cols=279 Identities=13% Similarity=0.027 Sum_probs=156.7
Q ss_pred Hhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372 8 IMSEYANK--RTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL 85 (402)
Q Consensus 8 ~i~e~~~~--~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~ 85 (402)
.+.++.++ ++|+...+....+..+|.++++.+++.+. + .+||+.|++.++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~-----------------------~-~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 124 AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF-----------------------T-INNQFVFWLGSGCALI 179 (417)
T ss_dssp HHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH-----------------------H-HCSHHHHTTTTTTTTT
T ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH-----------------------H-hchhHHHHHHHHHHHH
Confidence 34445443 35566677777778889999999998886 2 4699999988777655
Q ss_pred HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHH
Q 042372 86 TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLL 165 (402)
Q Consensus 86 ~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (402)
.++..++.+|+|+. . .+.++ .++.++.+...+..++.++++ .++......+..
T Consensus 180 ~~~~~~~~~~~~~~--~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 232 (417)
T 2cfq_A 180 LAVLLFFAKTDAPS--S-ATVAN-----------------AVGANHSAFSLKLALELFRQP-------KLWFLSLYVIGV 232 (417)
T ss_dssp HHHHSCSSCCCCSC--S-SCSSS-----------------SSSSCCCCCCHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHcCccccc--c-ccccc-----------------ccccccccccHHHHHHHhcCC-------chhhHHHHHHHH
Confidence 55544444443311 0 00000 000000000001111122211 122222222222
Q ss_pred HHHHHHHHHhHhhhhhhc-CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372 166 DIAFYTINLTQKDIYPAT-GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM 244 (402)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~ 244 (402)
...++....+.|.++.+. +....... ..+....+..++.+++.++.++++||+|||+.+..+..+.++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~ 303 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTR---------VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI 303 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 223333334456555442 21110000 11224555666777788899999999999999887776665554
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH-HHHHHHH
Q 042372 245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS-AAAGKAG 323 (402)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g 323 (402)
+.+... .+.+.......+. ........+..+.++.|.+|++.|+++.++. +...++|
T Consensus 304 ~~~~~~---------------------~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 304 IGSSFA---------------------TSALEVVILKTLH-MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHTTC---------------------CSHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHh---------------------ccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHH
Confidence 333221 1111222111111 1111111223456889999999999999984 7788899
Q ss_pred HHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCCCC
Q 042372 324 AIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNGLS 370 (402)
Q Consensus 324 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~~~ 370 (402)
++++|.+.+.+.+.. ++...|.+.+++.+++.++.++. ||+++.+
T Consensus 362 ~~~gp~l~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 362 MIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHTHHHHTHHHHS--HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHhhhhHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 999999999988866 77788888888888887766654 6654433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.65 E-value=2.7e-15 Score=140.42 Aligned_cols=185 Identities=12% Similarity=-0.005 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh
Q 042372 151 HGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF 230 (402)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr 230 (402)
+++.++......+......+....+.|.+.+++ .+..+.+. ......++..++.++.|+++||+|||
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~g~r 92 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGF------------ALSGISIAYGFSKFIMGSVSDRSNPR 92 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHH------------HHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHH------------HHHHHHHHHHHHHHhHHHHHHhcCch
Confidence 334555666666666666666777788888888 88776555 77778888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372 231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS 310 (402)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 310 (402)
+.++++.++.+++.++..+.... . .+.+.+.+. .++.+.+.....+...+++.|.+|++.|+
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 154 (451)
T 1pw4_A 93 VFLPAGLILAAAVMLFMGFVPWA-T----------------SSIAVMFVL-LFLCGWFQGMGWPPCGRTMVHWWSQKERG 154 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHH-H----------------SSSSHHHHH-HHHHHHHHHHTHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc-c----------------ccHHHHHHH-HHHHHHHhhhccchHHHHHHHHCCchhhh
Confidence 99999998888888777662100 0 122233332 33333334444566778899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCC-chhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372 311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-IKQSIIALAVVNFLGFLCSF-MVPETNG 368 (402)
Q Consensus 311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~l~et~~ 368 (402)
.+.++.+....+|.+++|.+.+.+.+.. + |+..|++.+++.++..++.+ ++||++.
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999999999999999999887776 7 99999999888877666554 4577544
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.59 E-value=1.1e-15 Score=146.07 Aligned_cols=82 Identities=7% Similarity=-0.042 Sum_probs=54.1
Q ss_pred hcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCc---------hhhhHHHHHHHHHHHHH
Q 042372 289 NFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQI---------KQSIIALAVVNFLGFLC 359 (402)
Q Consensus 289 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 359 (402)
.....+..+.+..|..|++.|+++.|+.++...+|++++|.+.+.+.+..+.+| ...|++.+++.+++.++
T Consensus 419 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (524)
T 2xut_A 419 EVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIV 498 (524)
T ss_dssp HHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 333455667788999999999999999999999999999999998876320011 22366667777776666
Q ss_pred Hhhc-ccCCCCC
Q 042372 360 SFMV-PETNGLS 370 (402)
Q Consensus 360 ~~~l-~et~~~~ 370 (402)
.+++ +++++++
T Consensus 499 ~~~~~~~~~~~~ 510 (524)
T 2xut_A 499 FALYARSYQMQD 510 (524)
T ss_dssp HC----------
T ss_pred HHHHHHHhccch
Confidence 5544 6554443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.59 E-value=2.3e-14 Score=133.54 Aligned_cols=184 Identities=11% Similarity=0.039 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372 153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII 232 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 232 (402)
+.++.+....+.............|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~dr~g~r~~ 93 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHH------------HHHHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhcchHH
Confidence 3455555566666666667777788888889999887655 7788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372 233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
++++.++.+++.++....... .+. ...++..+..+.+.....+...+++.|.+|++.|+.+
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~------------------~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 154 (438)
T 3o7q_A 94 IITGLFLYALGAALFWPAAEI------------------MNY-TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR 154 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------------------TCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccc------------------ccH-HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence 999998888887776322110 222 3333333344444444555677888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHh-hhcCCC------------------------chhhhHHHHHHHHHHHHHHhhc--cc
Q 042372 313 HGISAAAGKAGAIVGAFGVQYYT-QKGDKQ------------------------IKQSIIALAVVNFLGFLCSFMV--PE 365 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~-~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~l--~e 365 (402)
.++.+....+|..+++.+.+.+. +..+ . |+..|++.+++.++..++.++. ||
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVP-HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSC-CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999998887 4431 2 8888887777766665555543 55
Q ss_pred CCC
Q 042372 366 TNG 368 (402)
Q Consensus 366 t~~ 368 (402)
+++
T Consensus 234 ~~~ 236 (438)
T 3o7q_A 234 LQS 236 (438)
T ss_dssp CTT
T ss_pred ccc
Confidence 443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.57 E-value=2.7e-14 Score=135.18 Aligned_cols=174 Identities=14% Similarity=0.055 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhh------cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc-
Q 042372 154 HLLGTTSTWFLLDIAFYTINLTQKDIYPA------TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR- 226 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr- 226 (402)
.++......+.....++....+++.++.+ +|.+..+.+. ......++..++.++.|+++||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~ 81 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAAS------------IMAIYASMVYLSGTIGGFVADRI 81 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555566666666777777777777665 7888876555 7777888888999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch
Q 042372 227 IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA 306 (402)
Q Consensus 227 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 306 (402)
+|||++++.+.++.+++.++.... .+.+.+. +..+..+.+.....+...+++.|.+|+
T Consensus 82 ~g~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 82 IGARPAVFWGGVLIMLGHIVLALP---------------------FGASALF-GSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSC---------------------CSTTHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHH-HHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 899999999988877777665542 1222222 222333333344456677888999999
Q ss_pred hh--hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 307 RL--RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 307 ~~--r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+. |+.+.++.+....+|..++|.+.+.+.+.. +|+..|++.++..+++.+..++.
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA--GYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 778888888999999999999999998877 89999999887777776665544
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.48 E-value=8e-14 Score=127.19 Aligned_cols=174 Identities=11% Similarity=0.006 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372 160 STWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239 (402)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 239 (402)
...+.............|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+.++.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 7 LLVAVGQMAQTIYIPAIADMARDLNVREGAVQS------------VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHH------------HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 334444445555556678888889998886555 77777888888999999999999999999999888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
.+++.++.... ++. .......+..+.+.....+....++.|.+|++.|+++.++.+..
T Consensus 75 ~~~~~~~~~~~---------------------~~~-~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (375)
T 2gfp_A 75 FMLATLVAVTT---------------------SSL-TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG 132 (375)
T ss_dssp HHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHh---------------------ccH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 88887776654 222 22333333333334444556677889999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCCC
Q 042372 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNGL 369 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~~ 369 (402)
..+|..++|.+.+.+.+.. +|+..|++.+++.++..+..+ ++||++++
T Consensus 133 ~~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMW--NWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHH--HHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHhhHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 9999999999999988776 899999988888777666444 45776543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.43 E-value=1.5e-12 Score=124.23 Aligned_cols=174 Identities=10% Similarity=-0.008 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhh-hcC------CchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc
Q 042372 155 LLGTTSTWFLLDIAFYTINLTQKDIYP-ATG------IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI 227 (402)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~ 227 (402)
++.+....++....++....+++.++. ++| ++..+.+. ......++.+++.++.|+++||+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~ 81 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKD------------VFHSFVIGVYFFPLLGGWIADRF 81 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHH------------HHHHHHHHHHHTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666777777777665 477 78776554 67777888888999999999999
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch
Q 042372 228 -GRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA 306 (402)
Q Consensus 228 -grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 306 (402)
|||+.+.++.++.+++.++..... .+. ....+..+..+.+.....+...+++.|.+|+
T Consensus 82 ~g~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 140 (524)
T 2xut_A 82 FGKYNTILWLSLIYCVGHAFLAIFE--------------------HSV-QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ 140 (524)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHTS--------------------SCH-HHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhc--------------------ccH-HHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence 999999998888877777666531 022 2233333344444455566778889999999
Q ss_pred hhhhhhHHH---HHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 307 RLRSTCHGI---SAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 307 ~~r~~~~~~---~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
+.|+...+. .+....+|..++|.+.+.+.+.. +|+..|++.+++.+++.+..++.
T Consensus 141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--GAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHHHHHh
Confidence 999776665 88889999999999999888766 89999998888777766655543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.24 E-value=3.4e-11 Score=113.86 Aligned_cols=161 Identities=16% Similarity=0.059 Sum_probs=106.3
Q ss_pred HHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH
Q 042372 203 KAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG 282 (402)
Q Consensus 203 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (402)
+...+...++.++|++++|+++||+|||+.++++.++..++.++.++........... ...... -......+++..
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~---~~~~~~-~a~~~~~l~~~R 133 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPD---NTVPVY-LAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS---SSCCGG-GGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch---hHHHHH-HhhhHHHHHHHH
Confidence 3356667788899999999999999999999999888888877766432110000000 000000 012233444445
Q ss_pred HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCC------CchhhhHHHHHHHHHH
Q 042372 283 LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK------QIKQSIIALAVVNFLG 356 (402)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 356 (402)
++.+.+..+..+...++++|..|++.|+...++.+....+|..+++.+.......... .|+..+.+..+..++.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 5555555556667788999999999999999999999888888888776665543211 4556666666666666
Q ss_pred HHHHhhcccCC
Q 042372 357 FLCSFMVPETN 367 (402)
Q Consensus 357 ~~~~~~l~et~ 367 (402)
.+..+++||+.
T Consensus 214 ~~~~~~~peSp 224 (491)
T 4gc0_A 214 LMLLYTVPESP 224 (491)
T ss_dssp HHHGGGSCCCH
T ss_pred hhhhhcCCCCh
Confidence 66666778874
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.86 E-value=1.5e-10 Score=107.03 Aligned_cols=173 Identities=13% Similarity=-0.076 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372 158 TTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG 236 (402)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~ 236 (402)
.....+.....+.....++|.++++ .|.++.+.+. ......++..++.++.|+++||+|||+.++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~ 79 (417)
T 2cfq_A 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGI------------IFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI 79 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHH------------HHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3333344444455556677887765 7888887655 77777888889999999999999999999887
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch--hhhhhhHH
Q 042372 237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA--RLRSTCHG 314 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~ 314 (402)
..+.+++...+.......... ........+.....+....... ....+..++ +.|+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~g 141 (417)
T 2cfq_A 80 ITGMLVMFAPFFIFIFGPLLQ--------------YNILVGSIVGGIYLGFCFNAGA----PAVEAFIEKVSRRSNFEFG 141 (417)
T ss_dssp HHHTTSCHHHHHHHTHHHHHH--------------TTCCHHHHGGGSSTTHHHHTTH----HHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHhhhhcccchH
Confidence 665443221111100000000 0000000000000000001111 112233332 34566667
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372 315 ISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV 363 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (402)
.......+|..++|.+.+++.+. +|+..|++.++..++..+..++.
T Consensus 142 ~~~~~~~~g~~~~~~l~~~l~~~---~~~~~f~~~~~~~~~~~~~~~~~ 187 (417)
T 2cfq_A 142 RARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp HHSSSTTTHHHHHHHHHHHHHHH---CSHHHHTTTTTTTTTHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHc
Confidence 77777788899999999888774 78888887666544444443344
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=33.56 E-value=9.7 Score=17.82 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=10.9
Q ss_pred hhhhhccccchhHH
Q 042372 219 FTVFLIDRIGRFII 232 (402)
Q Consensus 219 ~~g~l~dr~grr~~ 232 (402)
+.|.+..++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788899999864
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.81 E-value=87 Score=16.30 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=7.8
Q ss_pred HHHhhcCCCchh
Q 042372 88 YWRMKMPETARY 99 (402)
Q Consensus 88 ~~~~~lpesp~~ 99 (402)
+...+.+|+|+.
T Consensus 18 FFAI~FRePPri 29 (32)
T 3arc_T 18 FFAIFFREPPRI 29 (32)
T ss_dssp HHHHHTSCCCCC
T ss_pred HHhhhhcCCCCC
Confidence 334467898874
Done!