Your job contains 1 sequence.
>042373
MPETTTKQLPVVQIEIDPLDAFMNDMECSFAEHPNNCFRLGRRLPAEDSHSASDYELFMK
RAKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSPAYRKQLDLKIREKCAPKPI
KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML
RHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLD
EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARG
LDEKELELVINFDAPNDYEDYVHHCCQSWLKSCAFRFISEENAIYATDLVKAFELSELVV
RDDLKAVADSFIAKVNLGLGQVHGTGHGGVALNLMKRRIRRGKQLRKAQAKEYGFGEDKS
DSEDVDEGTRKSGGDISHQDSIAKIATIAAASNSKASASTPSLISVAQLLPNGGPSIPLP
GVLGLSVPGGYSVV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042373
(494 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2074899 - symbol:AT3G09620 species:3702 "Arabi... 410 2.7e-75 3
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 402 7.6e-73 3
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 232 3.1e-47 3
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 232 3.1e-47 3
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 270 6.4e-42 2
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic... 264 1.3e-41 2
FB|FBgn0030631 - symbol:CG6227 species:7227 "Drosophila m... 279 2.4e-39 3
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 292 6.7e-39 3
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 198 4.9e-38 3
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 196 2.0e-36 3
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 266 2.5e-36 3
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 266 2.5e-36 3
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 266 2.5e-36 3
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 266 2.5e-36 3
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 266 2.5e-36 3
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 266 2.5e-36 3
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 265 3.3e-36 3
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 267 6.0e-36 3
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 197 6.3e-36 3
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 197 6.3e-36 3
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 197 6.3e-36 3
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 197 6.3e-36 3
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 197 6.3e-36 3
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 197 6.3e-36 3
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 197 6.3e-36 3
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 197 9.8e-36 3
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 197 1.0e-35 3
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 245 3.1e-35 3
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 196 3.8e-35 3
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 196 4.1e-35 3
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 208 4.8e-35 3
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 208 4.8e-35 3
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 196 5.8e-35 3
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 199 8.7e-35 3
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 199 8.7e-35 3
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 199 8.7e-35 3
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 199 1.5e-34 3
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 199 1.5e-34 3
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 199 1.6e-34 3
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 199 1.6e-34 3
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 267 1.7e-34 2
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 199 2.2e-34 3
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 207 9.2e-34 3
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 199 1.2e-33 3
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 194 1.9e-33 4
WB|WBGene00018776 - symbol:F53H1.1 species:6239 "Caenorha... 271 2.0e-33 3
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 199 4.0e-33 3
GENEDB_PFALCIPARUM|PFE0430w - symbol:PFE0430w "ATP-depend... 206 4.3e-33 4
UNIPROTKB|Q8I416 - symbol:PFE0430w "ATP-dependent RNA Hel... 206 4.3e-33 4
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 203 4.7e-33 4
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 201 4.8e-33 3
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 214 7.5e-33 3
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1... 188 9.6e-33 3
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 199 1.2e-32 4
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 199 1.5e-32 4
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po... 199 1.5e-32 4
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 203 1.5e-32 5
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 199 1.5e-32 4
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 199 1.5e-32 4
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 199 1.6e-32 4
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 214 1.8e-32 3
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 197 2.1e-32 3
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 203 5.5e-32 4
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 206 9.9e-32 3
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 204 1.3e-31 4
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 221 2.2e-31 2
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m... 223 1.2e-30 2
WB|WBGene00008119 - symbol:C46F11.4 species:6239 "Caenorh... 193 8.6e-30 3
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 185 1.5e-29 3
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 198 1.9e-29 3
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 222 5.2e-29 2
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 156 3.5e-27 3
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 182 2.4e-26 3
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"... 199 2.8e-26 4
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 163 4.2e-26 3
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 167 2.7e-25 3
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 172 1.1e-24 3
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 167 1.5e-24 3
WB|WBGene00013214 - symbol:Y54G11A.3 species:6239 "Caenor... 154 5.2e-24 3
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 159 8.6e-24 3
UNIPROTKB|Q86TM3 - symbol:DDX53 "Probable ATP-dependent R... 174 1.0e-23 3
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 158 1.7e-23 4
ZFIN|ZDB-GENE-990415-272 - symbol:vasa "vasa homolog" spe... 143 4.3e-23 3
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 162 7.3e-23 3
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 193 8.4e-23 2
DICTYBASE|DDB_G0293064 - symbol:DDB_G0293064 species:4468... 152 2.8e-22 3
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 169 3.8e-22 3
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 169 3.8e-22 3
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 211 6.2e-22 2
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 146 8.3e-22 4
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 147 8.5e-22 4
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 147 8.6e-22 4
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 147 8.6e-22 4
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 147 8.6e-22 4
UNIPROTKB|Q3MSQ8 - symbol:ddx4 "Probable ATP-dependent RN... 147 8.8e-22 3
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 170 1.4e-21 3
UNIPROTKB|D6RJA6 - symbol:DDX46 "Probable ATP-dependent R... 263 1.8e-21 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 137 3.6e-21 3
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 137 3.6e-21 3
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz... 146 5.0e-21 3
WARNING: Descriptions of 666 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 410 (149.4 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 95/194 (48%), Positives = 113/194 (58%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K++VCNL IA SV ARGLD KELELV+NFDAPN YEDYVH ++ K CA FISE
Sbjct: 661 KSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE 720
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRIR 400
++A YA DLVKA ELSE V DD+KAVA+ F+AKV +
Sbjct: 721 DDAKYAPDLVKALELSEQPVPDDVKAVAEGFMAKVKQGIEQAHGTGYGGSGFKFNEEEDE 780
Query: 401 RGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGGDISHQDXXXXXXXXXXXXXXXXXXXX 460
K +KAQAKEYGF E+KSDSED ++ RK+GGDIS Q
Sbjct: 781 VRKAAKKAQAKEYGFEEEKSDSEDENDVVRKAGGDISQQQITLAQIAAIASAASKA---- 836
Query: 461 PSLISVAQLLPNGG 474
P ++ QLLPNGG
Sbjct: 837 P--VTANQLLPNGG 848
Score = 354 (129.7 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 88/219 (40%), Positives = 130/219 (59%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
KI+Y+ RKNFY + ++I+RM+ AYRK+L+LK+ K P+PI+ W QTGLT+KIL+
Sbjct: 350 KIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILD 409
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
T KLN+E P+ IQA A +I+SG D + + +TGSGKTL F+LPMLRHI +Q
Sbjct: 410 TLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG 469
Query: 195 XXXXXXMAPTGELVRQ---QVRR-GRMIDLLCK-----NGV--KITNLTRVTYLVLDEAD 243
MAPT ELV+Q +R+ + + ++C +GV +I+ L R T +V+
Sbjct: 470 PIGLV-MAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPG 528
Query: 244 RMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM D+ +IT + V + D +F F P++
Sbjct: 529 RMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQI 567
Score = 307 (113.1 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 73/156 (46%), Positives = 95/156 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+LC + KITNL RVTYLV+DEADRMFDMGFEPQITRIVQNIRPDRQ VLFS TF
Sbjct: 528 GRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 587
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL-KSC 333
P +VE LARK V N + V R + K++ ++ ++ + W K
Sbjct: 588 PRQVETLARK--VLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEWYEKGK 645
Query: 334 AFRFI-SEENAI--YATDLVKAFELSELVVRD-DLK 365
F+ S+E +I + +D+ + + R D+K
Sbjct: 646 VLVFVRSQEKSISDFKSDVCNLLIATSVAARGLDVK 681
Score = 58 (25.5 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 15 EIDPLDAFMNDMECSFAEHPNN 36
EIDPLDAFMN M E +N
Sbjct: 250 EIDPLDAFMNTMVLPEVEKLSN 271
Score = 56 (24.8 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 15/94 (15%), Positives = 44/94 (46%)
Query: 77 KIKIDYQQLRKNFYTQAREITRMSPAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETF 136
+++ + +QL + + R + R+ + +I K P+ K W G + +++
Sbjct: 149 QVEDEQKQLAEEVEKRRRRVQEWQELKRQNEEAQIESK-GPETGKAWTLDGESDDEVKSD 207
Query: 137 SKLNHENPVAIQAPASALIISGLDSVAITETGSG 170
S+++ + ++ A +++ + A+T + +G
Sbjct: 208 SEMDVDRDTKLENGGDAKMVASENETAVTVSENG 241
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 402 (146.6 bits), Expect = 7.6e-73, Sum P(3) = 7.6e-73
Identities = 94/196 (47%), Positives = 110/196 (56%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K +VCNL IA SV ARGLD KELELV+NFDAPN YEDYVH ++ K CA FISE
Sbjct: 823 KNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE 882
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRIR 400
++A YA DLVKA ELSE V DDLKA+AD F+ KV +
Sbjct: 883 DDAKYAPDLVKALELSEQPVPDDLKALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEEE 942
Query: 401 RGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGG-DISHQDXXXXXXXXXXXXXXXXXXX 459
K +KAQAKEYGF EDKSDSED ++ RK+GG +IS Q
Sbjct: 943 VRKAAKKAQAKEYGFEEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAA 1002
Query: 460 XPSL-ISVAQLLPNGG 474
S ++ QLL NGG
Sbjct: 1003 PVSAPVTANQLLANGG 1018
Score = 344 (126.2 bits), Expect = 7.6e-73, Sum P(3) = 7.6e-73
Identities = 87/219 (39%), Positives = 127/219 (57%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
KI+Y+ RKNFY + ++I+RM+ YRK+L+LK+ K P+PIK W QTGLT+KIL+
Sbjct: 483 KIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILD 542
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
T KLN+E P+ IQ A +I+SG D + + +TGSGKTL F+LPMLRHI +Q
Sbjct: 543 TMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG 602
Query: 195 XXXXXXMAPTGELVRQ---QVRR-GRMIDLLCK-----NGV--KITNLTRVTYLVLDEAD 243
MAPT ELV+Q +R+ + + + C +GV +I+ L R T +V+
Sbjct: 603 PIGLV-MAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPG 661
Query: 244 RMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM D+ +IT + V + D +F F P++
Sbjct: 662 RMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQI 700
Score = 335 (123.0 bits), Expect = 6.7e-72, Sum P(3) = 6.7e-72
Identities = 87/211 (41%), Positives = 114/211 (54%)
Query: 19 LDAFMNDMECSFAEHPNNCFR--LGRRLPAEDSHSA-------------SDYELFMXXXX 63
LD+ MN E + P F LGR + EDS S D E FM
Sbjct: 412 LDSKMNGKESG--DRPKKGFNKALGRIIQGEDSDSDYSEPKNDDDPSLDEDDEEFMKRVK 469
Query: 64 XXXXXXXXEIIKSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKP 119
+ SKI +Y+ RKNFY + ++I+RM+ YRK+L+LK+ K P+P
Sbjct: 470 KTKAEKLSLVDHSKI--EYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRP 527
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPM 179
IK W QTGLT+KIL+T KLN+E P+ IQ A +I+SG D + + +TGSGKTL F+LPM
Sbjct: 528 IKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPM 587
Query: 180 LRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
LRHI +Q MAPT ELV+Q
Sbjct: 588 LRHIKDQPPVEAGDGPIGLV-MAPTRELVQQ 617
Score = 298 (110.0 bits), Expect = 7.9e-61, Sum P(3) = 7.9e-61
Identities = 70/142 (49%), Positives = 92/142 (64%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+LC + KITNL RVT+LV+DEADRMFDMGFEPQITRI+QNIRP+RQ VLFS TF
Sbjct: 661 GRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATF 720
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL-KSC 333
P +VE LARK V N + V R + K++ ++ +D + W K
Sbjct: 721 PRQVETLARK--VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGK 778
Query: 334 AFRFI-SEE--NAIYATDLVKA 352
F+ S+E +A+Y D++K+
Sbjct: 779 ILVFVQSQEKCDALYR-DMIKS 799
Score = 57 (25.1 bits), Expect = 7.6e-73, Sum P(3) = 7.6e-73
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 15 EIDPLDAFMNDM 26
EIDPLDAFMN M
Sbjct: 379 EIDPLDAFMNTM 390
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 232 (86.7 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 43/70 (61%), Positives = 56/70 (80%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+IDLL N ++ NL R T++VLDEADRMFD+GFEPQ+ +I+ IRPDRQ VLFS TF
Sbjct: 427 GRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATF 486
Query: 275 PPRVEILARK 284
P ++E LA++
Sbjct: 487 PRKMETLAKQ 496
Score = 213 (80.0 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 52/136 (38%), Positives = 74/136 (54%)
Query: 81 DYQQLRKNFYTQAREITRMSPAY----RKQLD-LKIREKCAPKPIKTWRQTGLTTKILET 135
+YQ+ RK FY +A E++ +S R+ LD +K++ P+PI W L T +
Sbjct: 248 NYQEFRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSV 307
Query: 136 F-SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
KL E P AIQ+ A I+SG D + I +TGSGKTL+++LPMLRHI +Q
Sbjct: 308 IHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQG 367
Query: 195 XXXXXXMAPTGELVRQ 210
++PT EL Q
Sbjct: 368 PIGLI-LSPTRELALQ 382
Score = 169 (64.5 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 49/150 (32%), Positives = 71/150 (47%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIY 345
N+ IA S+ ARGLD + L LVINFD PN EDYVH ++ K A F+S
Sbjct: 608 NILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKE 667
Query: 346 ATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRIRRGKQL 405
+LVKA +LS + L+ +A+ F+ KV NL + R + K L
Sbjct: 668 VFNLVKALKLSHSDIDPKLEEIANKFVTKVKAGKEKISSGFGGKGLDNLQEVRDNKLK-L 726
Query: 406 RKAQAKEYGFGEDKSDSEDVDEGTRKSGGD 435
K + FG+ + + + T+KS +
Sbjct: 727 EKQR-----FGDQQPQRQQEETETKKSNDE 751
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 232 (86.7 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 43/70 (61%), Positives = 56/70 (80%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+IDLL N ++ NL R T++VLDEADRMFD+GFEPQ+ +I+ IRPDRQ VLFS TF
Sbjct: 427 GRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATF 486
Query: 275 PPRVEILARK 284
P ++E LA++
Sbjct: 487 PRKMETLAKQ 496
Score = 213 (80.0 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 52/136 (38%), Positives = 74/136 (54%)
Query: 81 DYQQLRKNFYTQAREITRMSPAY----RKQLD-LKIREKCAPKPIKTWRQTGLTTKILET 135
+YQ+ RK FY +A E++ +S R+ LD +K++ P+PI W L T +
Sbjct: 248 NYQEFRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSV 307
Query: 136 F-SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
KL E P AIQ+ A I+SG D + I +TGSGKTL+++LPMLRHI +Q
Sbjct: 308 IHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQG 367
Query: 195 XXXXXXMAPTGELVRQ 210
++PT EL Q
Sbjct: 368 PIGLI-LSPTRELALQ 382
Score = 169 (64.5 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 49/150 (32%), Positives = 71/150 (47%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIY 345
N+ IA S+ ARGLD + L LVINFD PN EDYVH ++ K A F+S
Sbjct: 608 NILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKE 667
Query: 346 ATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRIRRGKQL 405
+LVKA +LS + L+ +A+ F+ KV NL + R + K L
Sbjct: 668 VFNLVKALKLSHSDIDPKLEEIANKFVTKVKAGKEKISSGFGGKGLDNLQEVRDNKLK-L 726
Query: 406 RKAQAKEYGFGEDKSDSEDVDEGTRKSGGD 435
K + FG+ + + + T+KS +
Sbjct: 727 EKQR-----FGDQQPQRQQEETETKKSNDE 751
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 270 (100.1 bits), Expect = 6.4e-42, Sum P(2) = 6.4e-42
Identities = 57/108 (52%), Positives = 74/108 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMIDLL N ++TNL RVTY+VLDEADRMFDMGFEPQ+ +I+ N+RPDRQ VLFS TF
Sbjct: 673 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATF 732
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYV 322
P +E LARKT + I V R + E+ ++ + N+ + +V
Sbjct: 733 PRNMEALARKTLTKPIEIV--VGGRSVVAPEITQIV--EVCNEEKKFV 776
Score = 249 (92.7 bits), Expect = 6.4e-42, Sum P(2) = 6.4e-42
Identities = 75/248 (30%), Positives = 113/248 (45%)
Query: 3 ETTTKQLPVVQIEIDPLDAFMNDMECSFAEHPNNCFRLGRRLPAE----DSHSAS----- 53
E ++ + E+DPLDAFM+++ S + + E D H S
Sbjct: 408 EADKMEVDAQEEELDPLDAFMSELAESAPPKKKAGAKFSKAQEPEAIFGDEHDVSMTAVG 467
Query: 54 --DYELFMXXXXXXXXXXXXEIIKSKIKIDYQQLRKNFYTQAREITRMSPA----YRKQL 107
D E F+ + K++Y+ R+ FYT+ ++ +MS R +L
Sbjct: 468 EGDAEDFLAIASKAKKKKDIPTVDHN-KVEYEPFRRKFYTEPSDLAQMSEEEAANLRLEL 526
Query: 108 D-LKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITE 166
D +K+R PKP++ W Q GL + L+ KL + +IQA A I+SG D + + +
Sbjct: 527 DGIKVRGLDVPKPVQKWSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAK 586
Query: 167 TGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVRRGRMIDLLCKNGV 226
TGSGKT+AFL+PM RHI +Q M PT EL Q + + CK +
Sbjct: 587 TGSGKTMAFLIPMFRHIKDQRPLENMEGPIGLI-MTPTRELATQ-IHKD------CKPFL 638
Query: 227 KITNLTRV 234
K NL V
Sbjct: 639 KALNLRAV 646
Score = 192 (72.6 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
Identities = 48/147 (32%), Positives = 75/147 (51%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
K + + IA SV ARGLD K+L+LV+N+DAPN EDYVH ++ A F++E
Sbjct: 840 KAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTE 899
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRIR 400
+ Y+ D+ KA + S V + ++ + DSF+ KV L + + R
Sbjct: 900 DQERYSVDIAKALKQSGQEVPEAVQKLVDSFLEKVKAGKEKASNSGFGGKGLERLDQE-R 958
Query: 401 RGKQLRKAQAKEYGFGEDKSDSEDVDE 427
++R + + Y GE+ D E+ DE
Sbjct: 959 DAARMR--ERRTYKTGEEGEDEEEKDE 983
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 264 (98.0 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 53/93 (56%), Positives = 67/93 (72%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+LC N +ITNL RVT+LVLDEADRMFDMGF PQI IV +IRPDRQ ++FS TF
Sbjct: 641 GRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATF 700
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELE 307
PP+VE +A+K + N + R + ++E
Sbjct: 701 PPKVENVAKK--ILNKPLEIIAGGRSIVSSDIE 731
Score = 253 (94.1 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 77/241 (31%), Positives = 110/241 (45%)
Query: 4 TTTKQLPVVQIEIDPLDAFMNDMECSFAEHPNNCFRLGR--RLPAEDSHSASDYELFMXX 61
TT KQ +IDPLDA+M ++ + N + + ++ +D + E
Sbjct: 389 TTIKQSIEEDDDIDPLDAYMENLN----KEANLNLKKSKTSQMIDDDEKLEEESEGEDDG 444
Query: 62 XXXXXXXXXXEIIKSK-IKIDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCA 116
E++ + I Y + +KNFY + + M+ +R +L +KI K
Sbjct: 445 KDKTIKKGKKEMLHTDHTSIKYAEFQKNFYIEVPVLANMTETEVLDFRSELGVKITGKDC 504
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
PKPI++W Q GLT K+ K +E P +IQA I++G D + I TGSGKTLAFL
Sbjct: 505 PKPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFL 564
Query: 177 LPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVRRGRMIDLLCKNGVKITNL-TRVT 235
LPM RHI Q M+PT EL Q I + CK K+ L T
Sbjct: 565 LPMFRHILAQPKSAPGEGMIALI-MSPTRELALQ-------IHVECKKFSKVLGLRTACV 616
Query: 236 Y 236
Y
Sbjct: 617 Y 617
Score = 163 (62.4 bits), Expect = 8.6e-31, Sum P(2) = 8.6e-31
Identities = 44/148 (29%), Positives = 72/148 (48%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K V + IA + +RGLD K+L LV+NFD P+ EDYVH ++ + A+ FI+
Sbjct: 803 KNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITP 862
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRIR 400
+ +++ ++KA E S V D+L+ + D++ K +
Sbjct: 863 DEERFSSSIIKALEQSGSKVPDELRKLNDTYEKKRKEGKDVLLAPTGFTGRGHKFDAAEE 922
Query: 401 RGKQL-RKAQAKEYGFGEDKSDSEDVDE 427
K + RK Q K YG E++ + ED D+
Sbjct: 923 DKKNIERKQQRKAYGI-EEEEEEEDEDK 949
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 279 (103.3 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 78/219 (35%), Positives = 111/219 (50%)
Query: 80 IDYQQLRKNFYTQAREITRMSPA----YRKQLD-LKIREKCAPKPIKTWRQTGLTTKILE 134
+ Y RKNFY + E+TRM+ A YR L+ ++++ K PKPIKTW Q G++ K +E
Sbjct: 464 VTYAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEME 523
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
+L E P IQ A I+SG D + I +TGSGKTLAF+LPM RHI +Q
Sbjct: 524 VLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDG 583
Query: 195 XXXXXXMAPTGELVRQ---QVRR-GRMIDL--LCKNG-----VKITNLTRVTYLVLDEAD 243
MAPT EL Q +R+ + + L +C G +I L R +++
Sbjct: 584 AIAII-MAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPG 642
Query: 244 RMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 643 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 681
Score = 272 (100.8 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 57/103 (55%), Positives = 74/103 (71%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+VLDEADRMFDMGFEPQ+ RI+ N+RPDRQ V+FS TF
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 701
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELE---LVINFDA 314
P ++E LAR+ + I V R + KE+E +++N DA
Sbjct: 702 PRQMEALARR--ILKKPIEVIVGGRSVVCKEVEQHVVILNDDA 742
Score = 200 (75.5 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 280 ILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFR 336
I+ K+ L IA SV ARGLD K+L LV+N+D PN YEDYVH C ++ K A+
Sbjct: 800 IIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYT 859
Query: 337 FISEENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXX-ALNLM 395
FI+ E + YA D+++A +LS ++ +L+A+ + A
Sbjct: 860 FITPEQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFD 919
Query: 396 KRRIRRGKQLRKAQAKEYGFGEDKSDSEDVDE 427
++ K+ +K Q G D D ED+++
Sbjct: 920 EQEFNAAKESKKLQKAALGLA-DSDDEEDIEQ 950
Score = 52 (23.4 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 2 PETTTKQLPVVQIE--IDPLDAFMNDM 26
PE K P + E IDPLDA+M ++
Sbjct: 357 PEVEDKPQPEAEPEDEIDPLDAYMQEV 383
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 292 (107.8 bits), Expect = 6.7e-39, Sum P(3) = 6.7e-39
Identities = 80/220 (36%), Positives = 112/220 (50%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPA----YRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI Y+ RKNFY + E+ RMSP YR +L+ + ++ K PKPIKTW Q G++ K+L
Sbjct: 310 KIQYEPFRKNFYVEVPELARMSPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVL 369
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
K N+E P IQA A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 370 NALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAE 429
Query: 194 XXXXXXXMAPTGELVRQQVR------RGRMIDLLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + + ++C G +I L R +++
Sbjct: 430 GPLAVI-MTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTP 488
Query: 243 DRMFDM-GFEP-QITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM G ++T + V + D +F F P+V
Sbjct: 489 GRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQV 528
Score = 257 (95.5 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 48/70 (68%), Positives = 58/70 (82%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDRQ V+FS TF
Sbjct: 489 GRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 548
Query: 275 PPRVEILARK 284
P +E LAR+
Sbjct: 549 PRTMEALARR 558
Score = 177 (67.4 bits), Expect = 6.7e-39, Sum P(3) = 6.7e-39
Identities = 40/91 (43%), Positives = 55/91 (60%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A SV ARGLD K+L LV+N+ PN YEDYVH ++ K A+ FI+E
Sbjct: 651 KNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 710
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
A Y+ D++KA ELS V +L+ + +F
Sbjct: 711 GQARYSGDILKALELSGSSVPAELEQLWTNF 741
Score = 47 (21.6 bits), Expect = 6.7e-39, Sum P(3) = 6.7e-39
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 212 EVDPLDAYMEEVK 224
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 198 (74.8 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
Identities = 53/145 (36%), Positives = 74/145 (51%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLT 129
K K D QL KNFY + E+ MS YR++ ++ +R PKP+ + Q
Sbjct: 44 KKKWDLDQLPKFEKNFYNENPEVHHMSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFP 103
Query: 130 TKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXX 189
+++ + N + P AIQA L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 104 QYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 163
Query: 190 XXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 164 ERGDGPICLV-LAPTRELA-QQVQQ 186
Score = 197 (74.4 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
Identities = 43/68 (63%), Positives = 49/68 (72%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L V TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 227 GRLIDFL---EVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 283
Query: 275 PPRVEILA 282
P V LA
Sbjct: 284 PKEVRQLA 291
Score = 131 (51.2 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
Identities = 33/100 (33%), Positives = 51/100 (51%)
Query: 275 PPRVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWL 330
P R +L ++ + IA V +RGLD ++++ VIN+D PN EDYVH +S
Sbjct: 379 PERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTN 438
Query: 331 KSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADS 370
K A+ F + N A DLV+ E + + L + D+
Sbjct: 439 KGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLLQLVDT 478
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 196 (74.1 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 43/68 (63%), Positives = 50/68 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L + G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 222 GRLIDFL-EAGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 278
Query: 275 PPRVEILA 282
P V LA
Sbjct: 279 PKEVRQLA 286
Score = 181 (68.8 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 52/147 (35%), Positives = 73/147 (49%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ IR E C PKP+ + Q
Sbjct: 38 KKKWDLNELPKFEKNFYVEHPEVARLTPYEVEELRRKKEITIRGMEGC-PKPVFAFHQCS 96
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
+++ N P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 97 FPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQP 156
Query: 188 XXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 157 YLERGDGPICLV-LAPTRELA-QQVQQ 181
Score = 127 (49.8 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDYVH +S K A+ F + N A +
Sbjct: 392 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 451
Query: 349 LVKAFELSELVVRDDLKAVAD 369
L+K E + + L + D
Sbjct: 452 LIKVLEEANQAINPKLMQLVD 472
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 266 (98.7 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 73/220 (33%), Positives = 109/220 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ RKNFY + E+ +MS +R +++ + ++ K PKPIK+W Q G++ KIL
Sbjct: 325 KIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKIL 384
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ K +E P IQ A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 385 NSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGE 444
Query: 194 XXXXXXXMAPTGELVRQQVRRGRMID------LLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + ++C G +I L R +++
Sbjct: 445 GPIAVI-MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 503
Query: 243 DRMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543
Score = 262 (97.3 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+VLDEADRMFDMGFEPQ+ RIV N+RPDRQ V+FS TF
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 563
Query: 275 PPRVEILARK 284
P +E LAR+
Sbjct: 564 PRAMEALARR 573
Score = 192 (72.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 42/91 (46%), Positives = 54/91 (59%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A SV ARGLD K L LV+N+ PN YEDYVH ++ K A+ FI+E
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 725
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
+ A YA D++KA ELS V DL+ + F
Sbjct: 726 DQARYAGDIIKALELSGTAVPPDLEKLWSDF 756
Score = 46 (21.3 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 224 ELDPLDAYMEEVK 236
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 266 (98.7 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 73/220 (33%), Positives = 109/220 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ RKNFY + E+ +MS +R +++ + ++ K PKPIK+W Q G++ KIL
Sbjct: 325 KIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKIL 384
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ K +E P IQ A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 385 NSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGE 444
Query: 194 XXXXXXXMAPTGELVRQQVRRGRMID------LLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + ++C G +I L R +++
Sbjct: 445 GPIAVI-MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 503
Query: 243 DRMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543
Score = 262 (97.3 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+VLDEADRMFDMGFEPQ+ RIV N+RPDRQ V+FS TF
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 563
Query: 275 PPRVEILARK 284
P +E LAR+
Sbjct: 564 PRAMEALARR 573
Score = 192 (72.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 42/91 (46%), Positives = 54/91 (59%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A SV ARGLD K L LV+N+ PN YEDYVH ++ K A+ FI+E
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 725
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
+ A YA D++KA ELS V DL+ + F
Sbjct: 726 DQARYAGDIIKALELSGTAVPPDLEKLWSDF 756
Score = 46 (21.3 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 224 ELDPLDAYMEEVK 236
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 266 (98.7 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 73/220 (33%), Positives = 109/220 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ RKNFY + E+ +MS +R +++ + ++ K PKPIK+W Q G++ KIL
Sbjct: 325 KIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKIL 384
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ K +E P IQ A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 385 NSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGE 444
Query: 194 XXXXXXXMAPTGELVRQQVRRGRMID------LLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + ++C G +I L R +++
Sbjct: 445 GPIAVI-MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 503
Query: 243 DRMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543
Score = 262 (97.3 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+VLDEADRMFDMGFEPQ+ RIV N+RPDRQ V+FS TF
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 563
Query: 275 PPRVEILARK 284
P +E LAR+
Sbjct: 564 PRAMEALARR 573
Score = 192 (72.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 42/91 (46%), Positives = 54/91 (59%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A SV ARGLD K L LV+N+ PN YEDYVH ++ K A+ FI+E
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 725
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
+ A YA D++KA ELS V DL+ + F
Sbjct: 726 DQARYAGDIIKALELSGTAVPPDLEKLWSDF 756
Score = 46 (21.3 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 224 ELDPLDAYMEEVK 236
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 266 (98.7 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 73/220 (33%), Positives = 109/220 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ RKNFY + E+ +MS +R +++ + ++ K PKPIK+W Q G++ KIL
Sbjct: 325 KIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKIL 384
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ K +E P IQ A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 385 NSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGE 444
Query: 194 XXXXXXXMAPTGELVRQQVRRGRMID------LLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + ++C G +I L R +++
Sbjct: 445 GPIAVI-MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 503
Query: 243 DRMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543
Score = 262 (97.3 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+VLDEADRMFDMGFEPQ+ RIV N+RPDRQ V+FS TF
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 563
Query: 275 PPRVEILARK 284
P +E LAR+
Sbjct: 564 PRAMEALARR 573
Score = 192 (72.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 42/91 (46%), Positives = 54/91 (59%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A SV ARGLD K L LV+N+ PN YEDYVH ++ K A+ FI+E
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 725
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
+ A YA D++KA ELS V DL+ + F
Sbjct: 726 DQARYAGDIIKALELSGTAVPPDLEKLWSDF 756
Score = 46 (21.3 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 224 ELDPLDAYMEEVK 236
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 266 (98.7 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 73/220 (33%), Positives = 109/220 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ RKNFY + E+ +MS +R +++ + ++ K PKPIK+W Q G++ KIL
Sbjct: 325 KIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKIL 384
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ K +E P IQ A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 385 NSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGE 444
Query: 194 XXXXXXXMAPTGELVRQQVRRGRMID------LLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + ++C G +I L R +++
Sbjct: 445 GPIAVI-MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 503
Query: 243 DRMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543
Score = 262 (97.3 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+VLDEADRMFDMGFEPQ+ RIV N+RPDRQ V+FS TF
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 563
Query: 275 PPRVEILARK 284
P +E LAR+
Sbjct: 564 PRAMEALARR 573
Score = 192 (72.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 42/91 (46%), Positives = 54/91 (59%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A SV ARGLD K L LV+N+ PN YEDYVH ++ K A+ FI+E
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 725
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
+ A YA D++KA ELS V DL+ + F
Sbjct: 726 DQARYAGDIIKALELSGTAVPPDLEKLWSDF 756
Score = 46 (21.3 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 224 ELDPLDAYMEEVK 236
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 266 (98.7 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 73/220 (33%), Positives = 109/220 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ RKNFY + E+ +MS +R +++ + ++ K PKPIK+W Q G++ KIL
Sbjct: 325 KIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKIL 384
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ K +E P IQ A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 385 NSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGE 444
Query: 194 XXXXXXXMAPTGELVRQQVRRGRMID------LLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + ++C G +I L R +++
Sbjct: 445 GPIAVI-MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 503
Query: 243 DRMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543
Score = 262 (97.3 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+VLDEADRMFDMGFEPQ+ RIV N+RPDRQ V+FS TF
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 563
Query: 275 PPRVEILARK 284
P +E LAR+
Sbjct: 564 PRAMEALARR 573
Score = 192 (72.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 42/91 (46%), Positives = 54/91 (59%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A SV ARGLD K L LV+N+ PN YEDYVH ++ K A+ FI+E
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 725
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
+ A YA D++KA ELS V DL+ + F
Sbjct: 726 DQARYAGDIIKALELSGTAVPPDLEKLWSDF 756
Score = 46 (21.3 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 224 ELDPLDAYMEEVK 236
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 265 (98.3 bits), Expect = 3.3e-36, Sum P(3) = 3.3e-36
Identities = 73/220 (33%), Positives = 109/220 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMS----PAYRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ RKNFY + E+ +MS +R +++ + ++ K PKPIK+W Q G++ KIL
Sbjct: 325 KIEYEPFRKNFYVEVPELAKMSLEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKIL 384
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ K +E P IQ A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 385 NSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGE 444
Query: 194 XXXXXXXMAPTGELVRQQVRRGRMID------LLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + ++C G +I L R +++
Sbjct: 445 GPIAVI-MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 503
Query: 243 DRMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543
Score = 262 (97.3 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+VLDEADRMFDMGFEPQ+ RIV N+RPDRQ V+FS TF
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 563
Query: 275 PPRVEILARK 284
P +E LAR+
Sbjct: 564 PRAMEALARR 573
Score = 192 (72.6 bits), Expect = 3.3e-36, Sum P(3) = 3.3e-36
Identities = 42/91 (46%), Positives = 54/91 (59%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A SV ARGLD K L LV+N+ PN YEDYVH ++ K A+ FI+E
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 725
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
+ A YA D++KA ELS V DL+ + F
Sbjct: 726 DQARYAGDIIKALELSGTAVPPDLEKLWSDF 756
Score = 46 (21.3 bits), Expect = 3.3e-36, Sum P(3) = 3.3e-36
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 224 ELDPLDAYMEEVK 236
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 267 (99.0 bits), Expect = 6.0e-36, Sum P(3) = 6.0e-36
Identities = 73/220 (33%), Positives = 109/220 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ RKNFY + E+ +M+ YR +++ + ++ K PKPIKTW Q G++ KIL
Sbjct: 324 KIEYEPFRKNFYVEVPELAKMTQEEVNVYRLEMEGITVKGKGCPKPIKTWVQCGISMKIL 383
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
K +E P IQ+ A I++G D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 384 TALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRALEEGE 443
Query: 194 XXXXXXXMAPTGELVRQQVRRGRMID------LLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + ++C G +I L R +++
Sbjct: 444 GPIAVI-MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 502
Query: 243 DRMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 503 GRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQV 542
Score = 262 (97.3 bits), Expect = 2.8e-35, Sum P(3) = 2.8e-35
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL RVTY+VLDEADRMFDMGFEPQ+ RIV N+RPDRQ V+FS TF
Sbjct: 503 GRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 562
Query: 275 PPRVEILARK 284
P +E LAR+
Sbjct: 563 PRAMEALARR 572
Score = 187 (70.9 bits), Expect = 6.0e-36, Sum P(3) = 6.0e-36
Identities = 42/90 (46%), Positives = 56/90 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A SV ARGLD K+L LV+N+ PN YEDYVH ++ K A+ FI+E
Sbjct: 665 KNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITE 724
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAV-AD 369
+ A YA D++KA ELS + DL+ + AD
Sbjct: 725 DQARYAGDIIKALELSGNPIPADLEKLWAD 754
Score = 46 (21.3 bits), Expect = 6.0e-36, Sum P(3) = 6.0e-36
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 223 ELDPLDAYMEEVK 235
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 197 (74.4 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 226 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 282 WPKEVRQLA 290
Score = 195 (73.7 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 40 KLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEA 99
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 160 PFLERGDGPICLV-LAPTRELA-QQVQQ 185
Score = 112 (44.5 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 396 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 455
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 456 LISVLREANQAINPKLLQLVED 477
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 197 (74.4 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 226 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 282 WPKEVRQLA 290
Score = 195 (73.7 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 40 KLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEA 99
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 160 PFLERGDGPICLV-LAPTRELA-QQVQQ 185
Score = 112 (44.5 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 396 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 455
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 456 LISVLREANQAINPKLLQLVED 477
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 197 (74.4 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 226 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 282 WPKEVRQLA 290
Score = 195 (73.7 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 40 KLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEA 99
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 160 PFLERGDGPICLV-LAPTRELA-QQVQQ 185
Score = 112 (44.5 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 396 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 455
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 456 LISVLREANQAINPKLLQLVED 477
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 197 (74.4 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 226 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 282 WPKEVRQLA 290
Score = 195 (73.7 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 40 KLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEA 99
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 160 PFLERGDGPICLV-LAPTRELA-QQVQQ 185
Score = 112 (44.5 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 396 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 455
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 456 LISVLREANQAINPKLLQLVED 477
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 197 (74.4 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 226 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 282 WPKEVRQLA 290
Score = 195 (73.7 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 40 KLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEA 99
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 160 PFLERGDGPICLV-LAPTRELA-QQVQQ 185
Score = 112 (44.5 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 396 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 455
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 456 LISVLREANQAINPKLLQLVED 477
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 197 (74.4 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 226 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 282 WPKEVRQLA 290
Score = 195 (73.7 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 40 KLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEA 99
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 160 PFLERGDGPICLV-LAPTRELA-QQVQQ 185
Score = 112 (44.5 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 396 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 455
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 456 LISVLREANQAINPKLLQLVED 477
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 197 (74.4 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 226 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 282 WPKEVRQLA 290
Score = 195 (73.7 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 40 KLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEA 99
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 160 PFLERGDGPICLV-LAPTRELA-QQVQQ 185
Score = 112 (44.5 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 396 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 455
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 456 LISVLREANQAINPKLLQLVED 477
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 197 (74.4 bits), Expect = 9.8e-36, Sum P(3) = 9.8e-36
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 283 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 338
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 339 WPKEVRQLA 347
Score = 195 (73.7 bits), Expect = 9.8e-36, Sum P(3) = 9.8e-36
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 97 KLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEA 156
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 157 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 216
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 217 PFLERGDGPICLV-LAPTRELA-QQVQQ 242
Score = 112 (44.5 bits), Expect = 9.8e-36, Sum P(3) = 9.8e-36
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 453 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 512
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 513 LISVLREANQAINPKLLQLVED 534
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 197 (74.4 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 226 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 282 WPKEVRQLA 290
Score = 193 (73.0 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKIDYQ-QLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 40 KLVKKKWDLDEPPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEA 99
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 160 PFLERGDGPICLV-LAPTRELA-QQVQQ 185
Score = 112 (44.5 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 396 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 455
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 456 LISVLREANQAINPKLLQLVED 477
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 245 (91.3 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 67/186 (36%), Positives = 98/186 (52%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPA----YRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
K+D +RKNF+ + E++ M+ A R +LD +K+ K PKP++ W GLT IL
Sbjct: 331 KLDIVPVRKNFWVEPYELSEMTEAEVAELRLELDGIKVSGKDVPKPVQKWSLCGLTRPIL 390
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ +KL ++ P AIQ A +I+SG D V + +TGSGKT+AFLLPM RHI +Q
Sbjct: 391 DVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNE 450
Query: 194 XXXXXXXMAPTGELVRQQVRRGRM------IDLLCKNG---VK--ITNLTRVTYLVLDEA 242
+ PT EL Q R + + +C G +K I +L R +V+
Sbjct: 451 GPIGLI-LTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATT 509
Query: 243 DRMFDM 248
RM D+
Sbjct: 510 GRMIDL 515
Score = 228 (85.3 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 43/70 (61%), Positives = 53/70 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMIDLL N ++ +L R TY+VLDEADRMFDMGFEPQ+ +I N+RPDRQ VLFS T
Sbjct: 510 GRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFSATM 569
Query: 275 PPRVEILARK 284
P ++ L +K
Sbjct: 570 PKIMDALVKK 579
Score = 182 (69.1 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 54/159 (33%), Positives = 77/159 (48%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
K+ VC + IA SV ARGLD K+L+LV+N+DAPN EDYVH ++ A F++E
Sbjct: 675 KSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTE 734
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRI- 399
E A + KA E S V + L + +F KV L K R
Sbjct: 735 EQENCAIGIAKALEQSGQPVPEKLIEMRKAFREKVKAGKAKDQSGFGGKGLEKLDKEREA 794
Query: 400 --RRGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGGDI 436
R ++ KA+ +E +DK +++ DE T K+ I
Sbjct: 795 ARNRERKTHKAEGEEDDAEDDKKTTKN-DEKTDKASSAI 832
Score = 92 (37.4 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 34/110 (30%), Positives = 51/110 (46%)
Query: 15 EIDPLDAFMNDM-ECSF--AEHPNNCFRLGRRLPAEDSHSASDYELFMXXXXXXXXXXXX 71
E+DPLDAFM D+ E SF A P + LP +++ + D E
Sbjct: 254 EVDPLDAFMADLTEPSFGPASKPVKTLSSAKVLPTPEAYFSDDDEFGASTKEGVDAKAIM 313
Query: 72 EII-KSKIK----IDYQQL-----RKNFYTQAREITRMSPAYRKQLDLKI 111
+ K K K IDY +L RKNF+ + E++ M+ A +L L++
Sbjct: 314 AMAAKRKKKEIPTIDYSKLDIVPVRKNFWVEPYELSEMTEAEVAELRLEL 363
Score = 53 (23.7 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 29/132 (21%), Positives = 52/132 (39%)
Query: 85 LRKNFYTQAREITRM-SPAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHEN 143
LR+ Y E RM + Q+ +KI P +T + KI++ K +N
Sbjct: 526 LRRTTYIVLDEADRMFDMGFEPQV-MKIFANVRPDR-QTVLFSATMPKIMDALVKKVLKN 583
Query: 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAP 203
PV I+ +++ S + + K LL +L +++ A
Sbjct: 584 PVEIEVGGKSVVASEITQIVEIRDEKSK-FNRLLELLGELYKDDDDVRSLIFVERQEKAD 642
Query: 204 TGELVRQQVRRG 215
EL+R+ +R+G
Sbjct: 643 --ELLRELLRKG 652
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 196 (74.1 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 43/68 (63%), Positives = 50/68 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L + G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 214 GRLIDFL-EAGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 270
Query: 275 PPRVEILA 282
P V LA
Sbjct: 271 PKEVRQLA 278
Score = 190 (71.9 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 48/148 (32%), Positives = 74/148 (50%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQT 126
++ K K +D + KNFY + ++ R + YR ++ +R PKPI + +
Sbjct: 28 KLTKKKWNLDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEA 87
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
++E + N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 88 NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 147
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 148 PFLERGDGPICLV-LAPTRELA-QQVQQ 173
Score = 110 (43.8 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N D
Sbjct: 384 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVND 443
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ + D
Sbjct: 444 LISVLREANQAINPKLLQLIED 465
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 196 (74.1 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 43/68 (63%), Positives = 50/68 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L + G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 222 GRLIDFL-EAGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 278
Query: 275 PPRVEILA 282
P V LA
Sbjct: 279 PKEVRQLA 286
Score = 190 (71.9 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 48/148 (32%), Positives = 74/148 (50%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQT 126
++ K K +D + KNFY + ++ R + YR ++ +R PKPI + +
Sbjct: 36 KLTKKKWNLDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEA 95
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
++E + N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 96 NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 155
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 156 PFLERGDGPICLV-LAPTRELA-QQVQQ 181
Score = 110 (43.8 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N D
Sbjct: 392 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVND 451
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ + D
Sbjct: 452 LISVLREANQAINPKLLQLIED 473
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 208 (78.3 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+IDLL +N +TNL RVTYLVLDEAD+M DMGFE QI +IV IRPDRQ +++S T+
Sbjct: 245 GRLIDLLEQN---VTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATW 301
Query: 275 PPRVEILAR 283
P V+ LA+
Sbjct: 302 PKEVQALAK 310
Score = 151 (58.2 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 80 IDYQQLRKNFYTQAREITRMSPAYRKQL-D---LKIRE-KCAPKPIKTWRQTGLTTKILE 134
I+ KNFY + +I+++S K++ D + I E + PKP+ + + G +++
Sbjct: 67 INLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIK 126
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
+ N P IQ + +SG D + ETGSGKTLAF+LP HI Q
Sbjct: 127 SLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDG 186
Query: 195 XXXXXXMAPTGELVRQQVRR 214
+APT EL +Q+R+
Sbjct: 187 PIVLV-LAPTRELA-EQIRQ 204
Score = 131 (51.2 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 34/90 (37%), Positives = 47/90 (52%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
KT + IA V +RGLD K ++ VINFD PN EDYVH ++ +F F++
Sbjct: 407 KTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTA 466
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADS 370
+ A DLVK SE V L+ ++ S
Sbjct: 467 DKYRLAKDLVKILRESEQPVPPQLEKISYS 496
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 208 (78.3 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+IDLL +N +TNL RVTYLVLDEAD+M DMGFE QI +IV IRPDRQ +++S T+
Sbjct: 245 GRLIDLLEQN---VTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATW 301
Query: 275 PPRVEILAR 283
P V+ LA+
Sbjct: 302 PKEVQALAK 310
Score = 151 (58.2 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 80 IDYQQLRKNFYTQAREITRMSPAYRKQL-D---LKIRE-KCAPKPIKTWRQTGLTTKILE 134
I+ KNFY + +I+++S K++ D + I E + PKP+ + + G +++
Sbjct: 67 INLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIK 126
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
+ N P IQ + +SG D + ETGSGKTLAF+LP HI Q
Sbjct: 127 SLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDG 186
Query: 195 XXXXXXMAPTGELVRQQVRR 214
+APT EL +Q+R+
Sbjct: 187 PIVLV-LAPTRELA-EQIRQ 204
Score = 131 (51.2 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 34/90 (37%), Positives = 47/90 (52%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
KT + IA V +RGLD K ++ VINFD PN EDYVH ++ +F F++
Sbjct: 407 KTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTA 466
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADS 370
+ A DLVK SE V L+ ++ S
Sbjct: 467 DKYRLAKDLVKILRESEQPVPPQLEKISYS 496
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 196 (74.1 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 43/68 (63%), Positives = 50/68 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L + G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 228 GRLIDFL-EAGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 284
Query: 275 PPRVEILA 282
P V LA
Sbjct: 285 PKEVRQLA 292
Score = 180 (68.4 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 44/135 (32%), Positives = 70/135 (51%)
Query: 84 QLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKL 139
+ KNFY + ++ R S YR+ ++ ++ + PKPI + + +++ +K
Sbjct: 55 KFEKNFYQENPDVARRSAQEVEHYRRSKEITVKGRDGPKPIVKFHEANFPKYVMDVITKQ 114
Query: 140 NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXX 199
N +P IQA + +SG D V I +TGSGKTL++LLP + HI Q
Sbjct: 115 NWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLV 174
Query: 200 XMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 175 -LAPTRELA-QQVQQ 187
Score = 119 (46.9 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VINFD PN+ EDY+H +S A+ F + N A D
Sbjct: 398 IATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHD 457
Query: 349 LVKAFELSELVVRDDLKAVAD 369
LV + + L +A+
Sbjct: 458 LVSVLREANQAINPKLIQMAE 478
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 199 (75.1 bits), Expect = 8.7e-35, Sum P(3) = 8.7e-35
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L ++G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 224 GRLIDFL-ESGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 280
Query: 275 PPRVEILA 282
P V LA
Sbjct: 281 PKEVRQLA 288
Score = 168 (64.2 bits), Expect = 8.7e-35, Sum P(3) = 8.7e-35
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ +R + C PKP+ +
Sbjct: 40 KKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVC-PKPVFAFHHAN 98
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
+++ + P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 99 FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQP 158
Query: 188 XXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 159 YLERGDGPICLV-LAPTRELA-QQVQQ 183
Score = 127 (49.8 bits), Expect = 8.7e-35, Sum P(3) = 8.7e-35
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDYVH +S K A+ F + N A +
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453
Query: 349 LVKAFELSELVVRDDLKAVAD 369
L+K E + + L + D
Sbjct: 454 LIKVLEEANQAINPKLMQLVD 474
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 199 (75.1 bits), Expect = 8.7e-35, Sum P(3) = 8.7e-35
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L ++G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 224 GRLIDFL-ESGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 280
Query: 275 PPRVEILA 282
P V LA
Sbjct: 281 PKEVRQLA 288
Score = 168 (64.2 bits), Expect = 8.7e-35, Sum P(3) = 8.7e-35
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ +R + C PKP+ +
Sbjct: 40 KKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVC-PKPVFAFHHAN 98
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
+++ + P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 99 FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQP 158
Query: 188 XXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 159 YLERGDGPICLV-LAPTRELA-QQVQQ 183
Score = 127 (49.8 bits), Expect = 8.7e-35, Sum P(3) = 8.7e-35
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDYVH +S K A+ F + N A +
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453
Query: 349 LVKAFELSELVVRDDLKAVAD 369
L+K E + + L + D
Sbjct: 454 LIKVLEEANQAINPKLMQLVD 474
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 199 (75.1 bits), Expect = 8.7e-35, Sum P(3) = 8.7e-35
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L ++G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 224 GRLIDFL-ESGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 280
Query: 275 PPRVEILA 282
P V LA
Sbjct: 281 PKEVRQLA 288
Score = 168 (64.2 bits), Expect = 8.7e-35, Sum P(3) = 8.7e-35
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ +R + C PKP+ +
Sbjct: 40 KKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVC-PKPVFAFHHAN 98
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
+++ + P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 99 FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQP 158
Query: 188 XXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 159 YLERGDGPICLV-LAPTRELA-QQVQQ 183
Score = 127 (49.8 bits), Expect = 8.7e-35, Sum P(3) = 8.7e-35
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDYVH +S K A+ F + N A +
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453
Query: 349 LVKAFELSELVVRDDLKAVAD 369
L+K E + + L + D
Sbjct: 454 LIKVLEEANQAINPKLMQLVD 474
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 199 (75.1 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L ++G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 303 GRLIDFL-ESGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 359
Query: 275 PPRVEILA 282
P V LA
Sbjct: 360 PKEVRQLA 367
Score = 168 (64.2 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ +R + C PKP+ +
Sbjct: 119 KKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVC-PKPVFAFHHAN 177
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
+++ + P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 178 FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQP 237
Query: 188 XXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 238 YLERGDGPICLV-LAPTRELA-QQVQQ 262
Score = 127 (49.8 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDYVH +S K A+ F + N A +
Sbjct: 473 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 532
Query: 349 LVKAFELSELVVRDDLKAVAD 369
L+K E + + L + D
Sbjct: 533 LIKVLEEANQAINPKLMQLVD 553
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 199 (75.1 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L ++G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 303 GRLIDFL-ESGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 359
Query: 275 PPRVEILA 282
P V LA
Sbjct: 360 PKEVRQLA 367
Score = 168 (64.2 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ +R + C PKP+ +
Sbjct: 119 KKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVC-PKPVFAFHHAN 177
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
+++ + P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 178 FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQP 237
Query: 188 XXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 238 YLERGDGPICLV-LAPTRELA-QQVQQ 262
Score = 127 (49.8 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDYVH +S K A+ F + N A +
Sbjct: 473 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 532
Query: 349 LVKAFELSELVVRDDLKAVAD 369
L+K E + + L + D
Sbjct: 533 LIKVLEEANQAINPKLMQLVD 553
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 199 (75.1 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L ++G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 305 GRLIDFL-ESGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 361
Query: 275 PPRVEILA 282
P V LA
Sbjct: 362 PKEVRQLA 369
Score = 168 (64.2 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ +R + C PKP+ +
Sbjct: 121 KKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVC-PKPVFAFHHAN 179
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
+++ + P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 180 FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQP 239
Query: 188 XXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 240 YLERGDGPICLV-LAPTRELA-QQVQQ 264
Score = 127 (49.8 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDYVH +S K A+ F + N A +
Sbjct: 475 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 534
Query: 349 LVKAFELSELVVRDDLKAVAD 369
L+K E + + L + D
Sbjct: 535 LIKVLEEANQAINPKLMQLVD 555
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 199 (75.1 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L ++G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 305 GRLIDFL-ESGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 361
Query: 275 PPRVEILA 282
P V LA
Sbjct: 362 PKEVRQLA 369
Score = 168 (64.2 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ +R + C PKP+ +
Sbjct: 121 KKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVC-PKPVFAFHHAN 179
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
+++ + P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 180 FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQP 239
Query: 188 XXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 240 YLERGDGPICLV-LAPTRELA-QQVQQ 264
Score = 127 (49.8 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDYVH +S K A+ F + N A +
Sbjct: 475 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 534
Query: 349 LVKAFELSELVVRDDLKAVAD 369
L+K E + + L + D
Sbjct: 535 LIKVLEEANQAINPKLMQLVD 555
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 267 (99.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 55/96 (57%), Positives = 68/96 (70%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N ++TNL R TYLVLDEADRMFD+GFEPQ+ RI+ NIRPDRQ VLFS TF
Sbjct: 550 GRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATF 609
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELELVI 310
P +E LARK V + +V R + E+E ++
Sbjct: 610 PRAMEALARK--VLKKPVEITVGGRSVVASEVEQIV 643
Score = 257 (95.5 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 69/186 (37%), Positives = 97/186 (52%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPA----YRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ +K+FY + E+ +SPA R LD +KIR PKP+ +W Q GL+ + +
Sbjct: 371 KINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTI 430
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ L +E P +IQA A I SG D + + +TGSGKT+AFLLPM RHI +Q
Sbjct: 431 SVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGE 490
Query: 194 XXXXXXXMAPTGELVRQQVRRGR-MIDLL-----CKNG---VK--ITNLTRVTYLVLDEA 242
M PT EL Q R + + LL C G +K I +L R +V+
Sbjct: 491 GPIAII-MTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTP 549
Query: 243 DRMFDM 248
RM D+
Sbjct: 550 GRMIDV 555
Score = 192 (72.6 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 52/143 (36%), Positives = 72/143 (50%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
K V ++ IA SV ARGLD K L+LV+N+D PN EDYVH ++ A FI+
Sbjct: 715 KAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITP 774
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRIR 400
E YA D+ KA ++S+ V +L+ +A F+ KV L+ +
Sbjct: 775 EQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDET-- 832
Query: 401 RGKQLRKAQAKEYGFGEDKSDSE 423
R + RK Q K YG ED+ D E
Sbjct: 833 RNAE-RKMQRKAYG--EDEEDVE 852
Score = 38 (18.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 131 KILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGK 171
K +E + N E PVA A +++ L+ V + K
Sbjct: 171 KAVENNHQRNAEKPVASDKITDAKLLARLERVRAWKESKAK 211
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 199 (75.1 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID+L + G TNL RVTYLVLDEADRM DMGFEPQI +I+ IRPDRQ ++S T+
Sbjct: 272 GRLIDML-EAGR--TNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATW 328
Query: 275 PPRVEILA 282
P V LA
Sbjct: 329 PKEVRQLA 336
Score = 169 (64.5 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 41/131 (31%), Positives = 66/131 (50%)
Query: 84 QLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKL 139
+ K+FY + ++T S +RK+ ++ ++ + P+P++T+ + G +L
Sbjct: 99 KFEKSFYKEHPDVTARSQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQ 158
Query: 140 NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXX 199
E P AIQ+ + +SG D V I ETGSGKTL++ LP + HI Q
Sbjct: 159 GFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLI 218
Query: 200 XMAPTGELVRQ 210
+APT EL Q
Sbjct: 219 -LAPTRELAVQ 228
Score = 119 (46.9 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISE 340
KT + +A V +RG+D +++ VIN+D PN+ EDYVH ++ K A F +
Sbjct: 434 KTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTT 493
Query: 341 ENAIYATDLV 350
+NA A DLV
Sbjct: 494 DNAKQARDLV 503
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 207 (77.9 bits), Expect = 9.2e-34, Sum P(3) = 9.2e-34
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L +N + TNL R TYLVLDEADRM DMGFEPQI +I++ IRPDRQ V++S T+
Sbjct: 371 GRLIDFL-EN--RNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATW 427
Query: 275 PPRVEILA 282
P V+ LA
Sbjct: 428 PKEVQALA 435
Score = 162 (62.1 bits), Expect = 9.2e-34, Sum P(3) = 9.2e-34
Identities = 43/149 (28%), Positives = 73/149 (48%)
Query: 81 DYQQLRKNFYTQAREITRMSPAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLN 140
D+ + N T A+ +++ R++L++ + P P+ ++ ++ L ++E +
Sbjct: 200 DFYNIHPN--TLAKSEQQVAEI-RRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQG 256
Query: 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXX 200
P AIQ+ + +SG D V I +TGSGKTLA++LP + HI Q
Sbjct: 257 FTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIALV- 315
Query: 201 MAPTGELVRQQVRRGRMIDLLCKNGVKIT 229
+APT EL +Q R LCK ++ T
Sbjct: 316 LAPTRELAQQIQSVVRDYGHLCKPEIRHT 344
Score = 121 (47.7 bits), Expect = 9.2e-34, Sum P(3) = 9.2e-34
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC-----CQSWLKSCAFRFISEENA 343
N+ IA V +RGLD ++L+ VIN+D PN E+YVH CQ A+ F + +NA
Sbjct: 543 NILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQL--GTAYTFFTPDNA 600
Query: 344 IYATDLVKAFE 354
A +L+ E
Sbjct: 601 KQARELISVLE 611
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 199 (75.1 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 43/68 (63%), Positives = 51/68 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L ++G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 224 GRLIDFL-ESGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 280
Query: 275 PPRVEILA 282
P V LA
Sbjct: 281 PKEVRQLA 288
Score = 168 (64.2 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ +R + C PKP+ +
Sbjct: 40 KKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVC-PKPVFAFHHAN 98
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
+++ + P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 99 FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQP 158
Query: 188 XXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 159 YLERGDGPICLV-LAPTRELA-QQVQQ 183
Score = 116 (45.9 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 292 IANSVRARGL--DEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYA 346
IA V +RGL D ++++ VIN+D PN EDYVH +S K A+ F + N A
Sbjct: 394 IATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 453
Query: 347 TDLVKAFELSELVVRDDLKAVAD 369
+L+K E + + L + D
Sbjct: 454 RELIKVLEEANQAINPKLMQLVD 476
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 194 (73.4 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 41/69 (59%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K T+L RVT+LV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 389 GRLIDHVKK---KATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 445
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 446 RKKIEKLAR 454
Score = 192 (72.6 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 44/136 (32%), Positives = 69/136 (50%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+IDY KNFY + EI+ ++ A R++L+LK+ PKP ++ G +++
Sbjct: 211 EIDYSPFEKNFYNEHEEISSLTGAEVVELRRKLNLKVSGAAPPKPATSFAHFGFDEQLMH 270
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D++ I +TGSGKT AF+ P+L HI +Q
Sbjct: 271 QIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEPGEG 330
Query: 195 XXXXXXMAPTGELVRQ 210
+ PT EL +Q
Sbjct: 331 PIAVI-VCPTRELCQQ 345
Score = 95 (38.5 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 277 RVEILA--RKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---K 331
R +++A +K N+ L +A V ARGLD + V+N+D D + + H ++ K
Sbjct: 541 RNKVIADFKKKNLPVL-VATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEK 599
Query: 332 SCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVA 368
A+ ++ ++ +A DLV+ E + V DL +A
Sbjct: 600 GVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLLDLA 636
Score = 46 (21.3 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 15 EIDPLDAFMNDME 27
E DPLDAFM ++E
Sbjct: 113 EDDPLDAFMAEVE 125
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 271 (100.5 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 75/220 (34%), Positives = 111/220 (50%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPA----YRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
K+ Y++ +KNFY + EI RM+ A YR++LD + ++ PKPIKTW Q G+ K++
Sbjct: 257 KVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMM 316
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
K + P +IQA A I+SG D + I +TGSGKTLAFLLPM RHI +Q
Sbjct: 317 NVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGD 376
Query: 194 XXXXXXXMAPTGELVRQQVRRGRM------IDLLCK-NGV----KITNLTRVTYLVLDEA 242
+APT EL Q + + + C GV +I +L R +V+
Sbjct: 377 GPIAVI-LAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTP 435
Query: 243 DRMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM D+ ++T + V + D +F F P++
Sbjct: 436 GRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQI 475
Score = 262 (97.3 bits), Expect = 3.5e-32, Sum P(3) = 3.5e-32
Identities = 51/70 (72%), Positives = 57/70 (81%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+L N K+TNL RVTYLVLDEADRMFD GFEPQI ++V NIRPD+Q VLFS TF
Sbjct: 436 GRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATF 495
Query: 275 PPRVEILARK 284
P +E LARK
Sbjct: 496 PRHMEALARK 505
Score = 155 (59.6 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 38/92 (41%), Positives = 52/92 (56%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFI-S 339
KT V + +A SV ARGLD K L LV+N+D PN YEDYVH ++ K A+ F+
Sbjct: 599 KTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLP 658
Query: 340 EENAIYATDLVKAFELSELVVRDDLKAVADSF 371
E A ++ +AFE + DLKA+ + F
Sbjct: 659 EHQEKMAGEICRAFETAGCKPPADLKAMFERF 690
Score = 47 (21.6 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 15 EIDPLDAFMNDMECSFAEHPNN 36
E DPLDAFM ++ A+ N
Sbjct: 175 EEDPLDAFMKEIATKNAKKTGN 196
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 199 (75.1 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 42/68 (61%), Positives = 49/68 (72%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 413 GRLIDFLSAGS---TNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 469
Query: 275 PPRVEILA 282
P V+ LA
Sbjct: 470 PKEVKQLA 477
Score = 167 (63.8 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 42/138 (30%), Positives = 71/138 (51%)
Query: 80 IDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKI 132
+D+ L +KNFY + + SP YR++ ++ +R + P PI+ + + L +
Sbjct: 234 VDFSNLAPFKKNFYQEHPNVANRSPYEVQRYREEQEITVRGQ-VPNPIQDFSEVHLPDYV 292
Query: 133 LETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXX 192
++ + ++ P AIQA + +SG + V I +TGSGKTL ++LP + HI Q
Sbjct: 293 MKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRG 352
Query: 193 XXXXXXXXMAPTGELVRQ 210
+APT EL +Q
Sbjct: 353 DGPIALV-LAPTRELAQQ 369
Score = 114 (45.2 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIY 345
N+ +A V ARGLD ++ VINFD P + EDY+H + S K +F F ++ NA
Sbjct: 582 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 641
Query: 346 ATDLVKAFELSELVVRDDLKAVA 368
A LV + + L+ +A
Sbjct: 642 AKALVDVLREANQEINPALENLA 664
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 206 (77.6 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 44/113 (38%), Positives = 68/113 (60%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPA----YRKQL-DLKIREKCAPKPIKTWRQTGLTTKIL 133
+IDY ++KN Y Q +EIT M + +RK ++ +R K P+P++ + Q GL +KIL
Sbjct: 676 EIDYIPIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKIL 735
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+ K N + IQ ++ G D +AI ETGSGKTL++L P++RH+ Q
Sbjct: 736 QILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQ 788
Score = 190 (71.9 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 35/70 (50%), Positives = 52/70 (74%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID+L + K+TNL RV+++VLDEADR+ D+GFE QI I++N R D+Q + S TF
Sbjct: 855 GRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATF 914
Query: 275 PPRVEILARK 284
P ++ +A+K
Sbjct: 915 PNYIQNMAKK 924
Score = 95 (38.5 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
IA SV ARG+D K + LVIN+ P+ EDY+H
Sbjct: 1025 IATSVMARGIDIKNIILVINYQCPDHIEDYIH 1056
Score = 41 (19.5 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 6 TKQLPVVQIEI---DPLDAFMNDMECSFAEHPNN 36
T + VV+I D LD FM ++E + E N
Sbjct: 461 TNDIHVVEINNKNEDALDLFMKEIEQACEEEKKN 494
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 206 (77.6 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 44/113 (38%), Positives = 68/113 (60%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPA----YRKQL-DLKIREKCAPKPIKTWRQTGLTTKIL 133
+IDY ++KN Y Q +EIT M + +RK ++ +R K P+P++ + Q GL +KIL
Sbjct: 676 EIDYIPIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKIL 735
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+ K N + IQ ++ G D +AI ETGSGKTL++L P++RH+ Q
Sbjct: 736 QILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQ 788
Score = 190 (71.9 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 35/70 (50%), Positives = 52/70 (74%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID+L + K+TNL RV+++VLDEADR+ D+GFE QI I++N R D+Q + S TF
Sbjct: 855 GRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATF 914
Query: 275 PPRVEILARK 284
P ++ +A+K
Sbjct: 915 PNYIQNMAKK 924
Score = 95 (38.5 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
IA SV ARG+D K + LVIN+ P+ EDY+H
Sbjct: 1025 IATSVMARGIDIKNIILVINYQCPDHIEDYIH 1056
Score = 41 (19.5 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 6 TKQLPVVQIEI---DPLDAFMNDMECSFAEHPNN 36
T + VV+I D LD FM ++E + E N
Sbjct: 461 TNDIHVVEINNKNEDALDLFMKEIEQACEEEKKN 494
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 203 (76.5 bits), Expect = 4.7e-33, Sum P(4) = 4.7e-33
Identities = 43/69 (62%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RVTYLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 380 GRLIDHVKK---KATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 436
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 437 RKKIEKLAR 445
Score = 183 (69.5 bits), Expect = 4.7e-33, Sum P(4) = 4.7e-33
Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+I+Y KNFY + EIT ++P R +L+L++ P+P ++ G +++
Sbjct: 202 EIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 261
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D + I +TGSGKT AF+ PML HI +Q
Sbjct: 262 QIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG 321
Query: 195 XXXXXXMAPTGELVRQ 210
+ PT EL +Q
Sbjct: 322 PIAVI-VCPTRELCQQ 336
Score = 89 (36.4 bits), Expect = 4.7e-33, Sum P(4) = 4.7e-33
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 548 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 607
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 608 LVRNLEGANQHVSKELLDLA 627
Score = 40 (19.1 bits), Expect = 4.7e-33, Sum P(4) = 4.7e-33
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 17 DPLDAFMNDME 27
DPL+AFM ++E
Sbjct: 109 DPLEAFMAEVE 119
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 201 (75.8 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID+L ++G TNL RVTYLVLDEADRM DMGFEPQI +I+ IRPDRQ +++S T+
Sbjct: 257 GRLIDML-ESGK--TNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATW 313
Query: 275 PPRVEILA 282
P V +A
Sbjct: 314 PKEVRNMA 321
Score = 161 (61.7 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 40/131 (30%), Positives = 64/131 (48%)
Query: 84 QLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKL 139
+ K+FY + ++T S A +R++ + ++ PKP++T+ + G +++
Sbjct: 84 KFEKHFYKEHPDVTNRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQ 143
Query: 140 NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXX 199
P AIQ+ + +SG D V I ETGSGKTL + LP + HI Q
Sbjct: 144 GFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLI 203
Query: 200 XMAPTGELVRQ 210
+APT EL Q
Sbjct: 204 -LAPTRELAVQ 213
Score = 111 (44.1 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISE 340
KT + +A V +RG+D + + V+N+D PN+ EDY+H ++ K A F +
Sbjct: 421 KTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTT 480
Query: 341 ENAIYATDLV 350
EN+ A DL+
Sbjct: 481 ENSKQARDLL 490
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 214 (80.4 bits), Expect = 7.5e-33, Sum P(3) = 7.5e-33
Identities = 50/105 (47%), Positives = 69/105 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID+L +K + R +YLVLDEADRMFD+GFEPQ+ IV IRPDRQ +LFS T
Sbjct: 360 GRLIDML---KMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATM 416
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYE 319
P +VE LAR+ + + I +V G+ +++ V+N P+D E
Sbjct: 417 PWKVEKLARE--ILSDPIRVTVGEVGMANEDITQVVNV-IPSDAE 458
Score = 213 (80.0 bits), Expect = 7.5e-33, Sum P(3) = 7.5e-33
Identities = 47/135 (34%), Positives = 74/135 (54%)
Query: 80 IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTKILET 135
IDY+ + K+FY + I+ M+ YR++L +++ +P+KT+ G +++I+
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 136 FSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXX 195
K +E P AIQ A +++SG D + I +TGSGKT AF+LPM+ HI +Q
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGP 302
Query: 196 XXXXXMAPTGELVRQ 210
APT EL Q
Sbjct: 303 IGVI-CAPTRELAHQ 316
Score = 99 (39.9 bits), Expect = 6.1e-21, Sum P(3) = 6.1e-21
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS--- 332
R+E L + K+ V ++ IA V ARGLD K L+ V+N+D D + +VH ++
Sbjct: 512 RMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRD 571
Query: 333 -CAFRFISEENAIYATDLVKA 352
A+ +++ A +A +LV +
Sbjct: 572 GVAYTLVTQREARFAGELVNS 592
Score = 49 (22.3 bits), Expect = 7.5e-33, Sum P(3) = 7.5e-33
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 15 EIDPLDAFMNDM--ECSFAEHPNNCFRLGRRLPAEDSHSASDY 55
EIDPLDAFM + E A P +L R +D Y
Sbjct: 77 EIDPLDAFMEGIHQEMKSAPPPKPKEKL-ERYKDDDDDPVESY 118
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 188 (71.2 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 43/68 (63%), Positives = 50/68 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR ID L ++G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 224 GR-IDFL-ESGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 279
Query: 275 PPRVEILA 282
P V LA
Sbjct: 280 PKEVRQLA 287
Score = 161 (61.7 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 40/119 (33%), Positives = 61/119 (51%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIR--EKCAPKPIKTWRQTG 127
K K D +L KNFY + E+ R++P R++ ++ +R + C PKP+ +
Sbjct: 40 KKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVC-PKPVFAFHHAN 98
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ + P IQ L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 99 FPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157
Score = 127 (49.8 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDYVH +S K A+ F + N A +
Sbjct: 393 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 452
Query: 349 LVKAFELSELVVRDDLKAVAD 369
L+K E + + L + D
Sbjct: 453 LIKVLEEANQAINPKLMQLVD 473
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 199 (75.1 bits), Expect = 1.2e-32, Sum P(4) = 1.2e-32
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RV+YLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 385 GRLIDHVKK---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 441
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 442 RKKIEKLAR 450
Score = 191 (72.3 bits), Expect = 1.2e-32, Sum P(4) = 1.2e-32
Identities = 45/142 (31%), Positives = 69/142 (48%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+IDY KNFY + EIT ++P R +L+L++ P+P ++ G +++
Sbjct: 207 EIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 266
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D + I +TGSGKT AF+ PML HI +Q
Sbjct: 267 QIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG 326
Query: 195 XXXXXXMAPTGELVRQQVRRGR 216
+ PT EL +Q G+
Sbjct: 327 PIAVI-VCPTRELCQQIHAEGK 347
Score = 89 (36.4 bits), Expect = 1.2e-32, Sum P(4) = 1.2e-32
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 613 LVRNLEGANQHVSKELLDLA 632
Score = 40 (19.1 bits), Expect = 1.2e-32, Sum P(4) = 1.2e-32
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 17 DPLDAFMNDME 27
DPL+AFM ++E
Sbjct: 114 DPLEAFMAEVE 124
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 199 (75.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RV+YLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 385 GRLIDHVKK---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 441
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 442 RKKIEKLAR 450
Score = 190 (71.9 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 44/136 (32%), Positives = 67/136 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+IDY KNFY + EIT ++P R +L+L++ P+P ++ G +++
Sbjct: 207 EIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 266
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D + I +TGSGKT AF+ PML HI +Q
Sbjct: 267 QIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG 326
Query: 195 XXXXXXMAPTGELVRQ 210
+ PT EL +Q
Sbjct: 327 PIAVI-VCPTRELCQQ 341
Score = 89 (36.4 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 613 LVRNLEGANQHVSKELLDLA 632
Score = 40 (19.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 17 DPLDAFMNDME 27
DPL+AFM ++E
Sbjct: 114 DPLEAFMAEVE 124
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 199 (75.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RV+YLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 385 GRLIDHVKK---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 441
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 442 RKKIEKLAR 450
Score = 190 (71.9 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 44/136 (32%), Positives = 67/136 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+IDY KNFY + EIT ++P R +L+L++ P+P ++ G +++
Sbjct: 207 EIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 266
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D + I +TGSGKT AF+ PML HI +Q
Sbjct: 267 QIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG 326
Query: 195 XXXXXXMAPTGELVRQ 210
+ PT EL +Q
Sbjct: 327 PIAVI-VCPTRELCQQ 341
Score = 89 (36.4 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 613 LVRNLEGANQHVSKELLDLA 632
Score = 40 (19.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 17 DPLDAFMNDME 27
DPL+AFM ++E
Sbjct: 114 DPLEAFMAEVE 124
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 203 (76.5 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 43/69 (62%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RVTYLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 385 GRLIDHVKK---KATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 441
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 442 RKKIEKLAR 450
Score = 184 (69.8 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 43/136 (31%), Positives = 68/136 (50%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+I+Y KNFY + EIT ++P R +L+L++ P+P ++ + G +++
Sbjct: 207 EIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFARFGFDEQLMH 266
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D + I +TGSGKT AF+ PML HI +Q
Sbjct: 267 QIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG 326
Query: 195 XXXXXXMAPTGELVRQ 210
+ PT EL +Q
Sbjct: 327 PIAVI-VCPTRELCQQ 341
Score = 89 (36.4 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 613 LVRNLEGANQHVSKELLDLA 632
Score = 40 (19.1 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 17 DPLDAFMNDME 27
DPL+AFM ++E
Sbjct: 114 DPLEAFMAEVE 124
Score = 37 (18.1 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 402 GKQLRKAQAKEYGFGEDKSDSEDVDEGT 429
G+ + + ++ E GE++ D+ D T
Sbjct: 899 GRNISEGRSNESRNGENRKDANSRDNKT 926
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 199 (75.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RV+YLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 385 GRLIDHVKK---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 441
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 442 RKKIEKLAR 450
Score = 190 (71.9 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 44/136 (32%), Positives = 67/136 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+IDY KNFY + EIT ++P R +L+L++ P+P ++ G +++
Sbjct: 207 EIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 266
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D + I +TGSGKT AF+ PML HI +Q
Sbjct: 267 QIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG 326
Query: 195 XXXXXXMAPTGELVRQ 210
+ PT EL +Q
Sbjct: 327 PIAVI-VCPTRELCQQ 341
Score = 89 (36.4 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 613 LVRNLEGANQHVSKELLDLA 632
Score = 40 (19.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 17 DPLDAFMNDME 27
DPL+AFM ++E
Sbjct: 114 DPLEAFMAEVE 124
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 199 (75.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RV+YLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 385 GRLIDHVKK---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 441
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 442 RKKIEKLAR 450
Score = 190 (71.9 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 44/136 (32%), Positives = 67/136 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+IDY KNFY + EIT ++P R +L+L++ P+P ++ G +++
Sbjct: 207 EIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 266
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D + I +TGSGKT AF+ PML HI +Q
Sbjct: 267 QIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG 326
Query: 195 XXXXXXMAPTGELVRQ 210
+ PT EL +Q
Sbjct: 327 PIAVI-VCPTRELCQQ 341
Score = 89 (36.4 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 613 LVRNLEGANQHVSKELLDLA 632
Score = 40 (19.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 17 DPLDAFMNDME 27
DPL+AFM ++E
Sbjct: 114 DPLEAFMAEVE 124
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 199 (75.1 bits), Expect = 1.6e-32, Sum P(4) = 1.6e-32
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RV+YLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 385 GRLIDHVKK---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 441
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 442 RKKIEKLAR 450
Score = 190 (71.9 bits), Expect = 1.6e-32, Sum P(4) = 1.6e-32
Identities = 44/136 (32%), Positives = 67/136 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+IDY KNFY + EIT ++P R +L+L++ P+P ++ G +++
Sbjct: 207 EIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 266
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D + I +TGSGKT AF+ PML HI +Q
Sbjct: 267 QIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG 326
Query: 195 XXXXXXMAPTGELVRQ 210
+ PT EL +Q
Sbjct: 327 PIAVI-VCPTRELCQQ 341
Score = 89 (36.4 bits), Expect = 1.6e-32, Sum P(4) = 1.6e-32
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 552 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 611
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 612 LVRNLEGANQHVSKELLDLA 631
Score = 40 (19.1 bits), Expect = 1.6e-32, Sum P(4) = 1.6e-32
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 17 DPLDAFMNDME 27
DPL+AFM ++E
Sbjct: 114 DPLEAFMAEVE 124
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 214 (80.4 bits), Expect = 1.8e-32, Sum P(3) = 1.8e-32
Identities = 44/68 (64%), Positives = 54/68 (79%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID+L ++G TNL RVTYLVLDEADRM DMGFEPQI +I+ IRPDRQ ++FS T+
Sbjct: 516 GRLIDIL-ESGK--TNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATW 572
Query: 275 PPRVEILA 282
P V+ LA
Sbjct: 573 PKEVQALA 580
Score = 145 (56.1 bits), Expect = 1.8e-32, Sum P(3) = 1.8e-32
Identities = 37/131 (28%), Positives = 61/131 (46%)
Query: 84 QLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKL 139
+ KNFY + ++++ + +R + ++ + P PI + Q +++
Sbjct: 343 RFEKNFYLEHPDVSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGA 402
Query: 140 NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXX 199
NP IQ+ A + + G D + + +TGSGKTLAFLLP + HI Q
Sbjct: 403 GFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLV 462
Query: 200 XMAPTGELVRQ 210
+APT EL Q
Sbjct: 463 -LAPTRELALQ 472
Score = 114 (45.2 bits), Expect = 1.8e-32, Sum P(3) = 1.8e-32
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 275 PPRVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWL 330
P R +L++ K + + IA V +RGLD K+++ V+N+D PN E Y+H ++
Sbjct: 666 PERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGA 725
Query: 331 KSCAFRFISEENAIYATDLVK 351
++ ++ +NA A +L+K
Sbjct: 726 SGVSYSLLTTDNARLANELIK 746
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 197 (74.4 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L NG TN+ + +YLVLDEADRM DMGFEPQI +I+ IRPDRQ ++FS T+
Sbjct: 261 GRLLDFL-DNGT--TNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATW 317
Query: 275 PPRVEILA 282
P V LA
Sbjct: 318 PKEVRALA 325
Score = 138 (53.6 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 46/152 (30%), Positives = 74/152 (48%)
Query: 85 LRKNFYTQAREITRMSPAYRKQL----DLKIREKCAPKPIKTWRQTGLTTKILET-FSKL 139
+ K+FY + ++R Q + + + P+P+ + + L +I E + K
Sbjct: 90 IEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELLYGKF 149
Query: 140 NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXX 199
+ P IQ+ + + +SG D ++I +TGSGKTLAF+LP L HI +Q
Sbjct: 150 --QKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLV 207
Query: 200 XMAPTGELVRQQVRRGRMIDLLCKNGVKITNL 231
+ PT EL QQV+ ID G+K+T L
Sbjct: 208 LL-PTRELA-QQVQEVS-IDFCHSLGLKMTCL 236
Score = 133 (51.9 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 35/94 (37%), Positives = 52/94 (55%)
Query: 279 EILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAF 335
E A KT + +A V ARGLD +++ VIN+D PN+ EDYVH + S K A+
Sbjct: 421 EFKAGKTPIM---LATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAY 477
Query: 336 RFISEENAIYATDLVKAFELSELVVRDDLKAVAD 369
F + NA A DL+K + ++ V L+ +A+
Sbjct: 478 TFFTHTNASKAKDLLKVLDEAKQTVPQALRDMAN 511
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 203 (76.5 bits), Expect = 5.5e-32, Sum P(4) = 5.5e-32
Identities = 43/69 (62%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RVTYLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 387 GRLIDHVKK---KATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 443
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 444 RKKIEKLAR 452
Score = 183 (69.5 bits), Expect = 5.5e-32, Sum P(4) = 5.5e-32
Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+I+Y KNFY + EIT ++P R +L+L++ P+P ++ G +++
Sbjct: 209 EIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 268
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQ + +SG D + I +TGSGKT AF+ PML HI +Q
Sbjct: 269 QIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG 328
Query: 195 XXXXXXMAPTGELVRQ 210
+ PT EL +Q
Sbjct: 329 PIAVI-VCPTRELCQQ 343
Score = 89 (36.4 bits), Expect = 5.5e-32, Sum P(4) = 5.5e-32
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 555 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 614
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 615 LVRNLEGANQHVSKELLDLA 634
Score = 37 (18.1 bits), Expect = 5.5e-32, Sum P(4) = 5.5e-32
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 402 GKQLRKAQAKEYGFGEDKSDSEDVDEGT 429
G+ + + ++ E GE++ D+ D T
Sbjct: 901 GRNISEGRSNESRNGENRKDANSRDNKT 928
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 206 (77.6 bits), Expect = 9.9e-32, Sum P(3) = 9.9e-32
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID+L + G TNL RVTYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 259 GRLIDML-EAGK--TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 315
Query: 275 PPRVEILAR 283
P V+ L R
Sbjct: 316 PKEVQQLTR 324
Score = 149 (57.5 bits), Expect = 9.9e-32, Sum P(3) = 9.9e-32
Identities = 41/137 (29%), Positives = 63/137 (45%)
Query: 81 DYQQL---RKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTKIL 133
D +QL KNFY++ ++ S +RK+ ++ ++ P PI T+ + G +L
Sbjct: 80 DLEQLPKFEKNFYSEHPDVAARSDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVL 139
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ P IQ + +SG D + I TGSGKTL++ LP + HI Q
Sbjct: 140 QEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGD 199
Query: 194 XXXXXXXMAPTGELVRQ 210
+APT EL Q
Sbjct: 200 GPIVLV-LAPTRELAVQ 215
Score = 105 (42.0 bits), Expect = 9.9e-32, Sum P(3) = 9.9e-32
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIY 345
++ +A V ARG+D K + VIN+D P + EDYVH ++ A F +E N+
Sbjct: 426 SIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKL 485
Query: 346 ATDLVKAFELSELVVRDDLK 365
DL K + V +L+
Sbjct: 486 GGDLCKIMREANQTVPPELQ 505
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 204 (76.9 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 41/69 (59%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID++ +K T L RV+YLVLDEAD+MFD GF PQ+ IV ++RPDRQ +LFS TF
Sbjct: 437 GRLIDMI---KLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATF 493
Query: 275 PPRVEILAR 283
P VE AR
Sbjct: 494 KPNVEEFAR 502
Score = 159 (61.0 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 41/136 (30%), Positives = 65/136 (47%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
K +Y + K FY + +I ++ RK LD+++ P+ ++ G +L+
Sbjct: 259 KEEYIEFNKIFYEEHPDIANLTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQ 318
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
+K + E P IQ A + +SG D +AI +TGSGKT F+ P + HI +Q
Sbjct: 319 AIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDG 378
Query: 195 XXXXXXMAPTGELVRQ 210
+APT EL Q
Sbjct: 379 PIALF-LAPTRELAHQ 393
Score = 95 (38.5 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
K N+ IA V ARGLD ++ V+N+D D E + H ++ A+ I+
Sbjct: 597 KEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITP 656
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVA 368
++ ++ DL+K E + V +L VA
Sbjct: 657 KDIHFSVDLIKNLESASQFVPPELIDVA 684
Score = 51 (23.0 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 15 EIDPLDAFMNDMECSFA 31
EIDPLDAFM ++ A
Sbjct: 150 EIDPLDAFMENVNAQAA 166
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 221 (82.9 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 47/71 (66%), Positives = 56/71 (78%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID+L C++ TNL RVTYLVLDEADRM DMGFEPQI +IV IRPDRQ +L+S T
Sbjct: 297 GRLIDMLECQH----TNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSAT 352
Query: 274 FPPRVEILARK 284
+P VE LAR+
Sbjct: 353 WPREVETLARQ 363
Score = 196 (74.1 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 50/147 (34%), Positives = 71/147 (48%)
Query: 87 KNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHE 142
KNFY ++ + M+ YR + D+ + + PKP+K ++ ILE +KL
Sbjct: 127 KNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFT 186
Query: 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMA 202
P IQA + + G D + I ETGSGKTLA+LLP L H+ Q +A
Sbjct: 187 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLI-LA 245
Query: 203 PTGELVRQQVRRGRMIDLLCKNGVKIT 229
PT EL Q R L ++GV+ T
Sbjct: 246 PTRELAVQIQEESRKFGL--RSGVRST 270
Score = 147 (56.8 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 41/122 (33%), Positives = 63/122 (51%)
Query: 253 QITRIVQNIRPDRQAVLFSPTFPPRVEILAR-KTNVCNLSIANSVRARGLDEKELELVIN 311
Q+TR ++ A+ T R +LA K+ + A V ARGLD K+++ V+N
Sbjct: 425 QVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVN 484
Query: 312 FDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVA 368
+D PN EDY+H ++ K AF F + +NA +A +LVK + + VV L A+
Sbjct: 485 YDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSALV 544
Query: 369 DS 370
S
Sbjct: 545 RS 546
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 223 (83.6 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 61/153 (39%), Positives = 92/153 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID++ +K TNL RVT+LVLDEADRMF MGFEPQ+ I ++RPDRQ ++FS TF
Sbjct: 401 GRMIDMV---KMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATF 457
Query: 275 PPRVEILARKTNVCNLSIANSVR-ARG-LDEKELELVIN-FDAPNDYEDYVHHCCQSWLK 331
R+E LAR +++ VR +G L+E ++ + + PN + + +WL
Sbjct: 458 KKRIERLARDV------LSDPVRIVQGDLNEANQDITQSVYVFPNPLQKW------NWLL 505
Query: 332 SCAFRFISEENA-IYATDLVKAFELSE-LVVRD 362
+F+SE + I+ T V A +S L++++
Sbjct: 506 CHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKE 538
Score = 191 (72.3 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 45/136 (33%), Positives = 68/136 (50%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPAY----RKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+I+Y+ KNFYTQ +I + R+ L +K+ PKP+ ++ G ++++
Sbjct: 223 EIEYEPFEKNFYTQHDDIAALDDEQVRELRRTLGVKVTGPSPPKPVTSFGHFGFDEQLIK 282
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K + P IQA A +SG D + I +TGSGKT AF+ PML H+ +Q
Sbjct: 283 AVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDG 342
Query: 195 XXXXXXMAPTGELVRQ 210
+APT EL Q
Sbjct: 343 PIGLI-LAPTRELSLQ 357
Score = 111 (44.1 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C++ +A V ARGLD + V+N+D D E + H ++ K A+ +++
Sbjct: 561 KRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTD 620
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVA 368
++ +A LV+ E ++ +V DDL +A
Sbjct: 621 KDKEFAGHLVRNLEGADQLVPDDLMELA 648
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 193 (73.0 bits), Expect = 8.6e-30, Sum P(3) = 8.6e-30
Identities = 41/69 (59%), Positives = 50/69 (72%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+IDL+ K G TN R T+LV DEADRMFDMGFE Q+ I ++RPDRQ ++FS TF
Sbjct: 398 GRIIDLV-KMGA--TNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLMFSATF 454
Query: 275 PPRVEILAR 283
+VE LAR
Sbjct: 455 KQKVERLAR 463
Score = 164 (62.8 bits), Expect = 8.6e-30, Sum P(3) = 8.6e-30
Identities = 38/112 (33%), Positives = 60/112 (53%)
Query: 79 KIDYQQLRKNFYTQAREITRMS--PAYRKQ--LDLKIREKCAPKPIKTWRQTGLTTKILE 134
+I YQ+ KNFY + +I R+ R Q ++L++ P+P+ ++ ++E
Sbjct: 219 QIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLME 278
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
K +E P IQA A +SG D + I +TGSGKT A+L P + HI +Q
Sbjct: 279 AIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQ 330
Score = 94 (38.1 bits), Expect = 8.6e-30, Sum P(3) = 8.6e-30
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 277 RVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSC 333
R E L + + +A V ARGLD E+ VINFD D + +VH ++ K
Sbjct: 550 RNENLLKFRKKSQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGT 609
Query: 334 AFRFISEENAIYATDLVKAFE 354
A+ ++E++ LVK E
Sbjct: 610 AYTLVTEKDIEMVGHLVKNLE 630
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 185 (70.2 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL N + NL +TYLVLDEADRM DMGFEPQI +I+ ++RPDRQ V+ S T+
Sbjct: 185 GRLNDLQMNNFI---NLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATW 241
Query: 275 PPRVEILAR 283
P V LA+
Sbjct: 242 PDGVRRLAK 250
Score = 156 (60.0 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 45/142 (31%), Positives = 65/142 (45%)
Query: 81 DYQQLRKNFYTQAREITRMSPA----YRKQL------DLKIREK-CAPKPIKTWRQT-GL 128
D + KNFY ++ MSP +RK+ DLK EK C P P+ +
Sbjct: 1 DLPPIEKNFYKESSRTACMSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDVFEQ 60
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
I+ K + P IQ+ A +I+ G+D + I +TG+GKTLA+L+P H+ Q
Sbjct: 61 YPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPI 120
Query: 189 XXXXXXXXXXXXMAPTGELVRQ 210
+APT EL Q
Sbjct: 121 PKDKRGGPGMLVLAPTRELALQ 142
Score = 96 (38.9 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 24/91 (26%), Positives = 49/91 (53%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFISE 340
K + +A + +RGLD ++ V NFD P + E+YVH ++ A I++
Sbjct: 344 KKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITK 403
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
++ A++L+ + ++ VV D+L ++A+ +
Sbjct: 404 KDWKAASELIDILQRAKQVVPDELISMAERY 434
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 198 (74.8 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 42/70 (60%), Positives = 52/70 (74%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L + G T+L R TYLVLDEADRM DMGFEPQI +I+Q IRPDRQ +++S T+
Sbjct: 289 GRLIDFL-ERGT--TSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATW 345
Query: 275 PPRVEILARK 284
P V LA +
Sbjct: 346 PKEVRQLAEE 355
Score = 140 (54.3 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 38/136 (27%), Positives = 60/136 (44%)
Query: 79 KIDYQQLRKNFYTQAREITRMS----PAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
+++ RKNFY + + + ++ I+ P P + + G ++
Sbjct: 111 EVNLTPFRKNFYKPCDSVLARTVGETETFLTSNEITIKGDQVPTPSIEFEEGGFPDYVMN 170
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
K P AIQA + +SG D V + +TGSGKTLA++LP + HI Q
Sbjct: 171 EIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDG 230
Query: 195 XXXXXXMAPTGELVRQ 210
+APT EL +Q
Sbjct: 231 PIALV-LAPTRELAQQ 245
Score = 109 (43.4 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIY 345
++ +A V ARGLD +++ VIN+D P++ EDYVH ++ + A+ + NA
Sbjct: 456 SILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANK 515
Query: 346 ATDLVKAFELSELVVRDDLKAVA 368
A DL++ + + L +A
Sbjct: 516 ANDLIQVLREANQTINPKLMNMA 538
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 222 (83.2 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
Identities = 52/102 (50%), Positives = 68/102 (66%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D+L N TNL RVTYLVLDEADRM DMGFEPQI +IV IRPDRQ V+FS T+
Sbjct: 254 GRLLDMLDSNK---TNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATW 310
Query: 275 PPRVEILARK--TNVCNLSIANSVRARGLDEKEL-ELVINFD 313
P V+ LAR + +++ + A + K++ E+V N D
Sbjct: 311 PKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNAD 352
Score = 171 (65.3 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
Identities = 46/140 (32%), Positives = 69/140 (49%)
Query: 75 KSKIKIDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTT 130
K++ I +Q K+FY + + S A YRK+ ++ + PKP+ T+ + G
Sbjct: 75 KNETLIPFQ---KDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPN 131
Query: 131 KILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXX 190
+L+ +L E P IQ A + +SG D V I+ TGSGKTL++ LP + HI Q
Sbjct: 132 YVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLS 191
Query: 191 XXXXXXXXXXMAPTGELVRQ 210
+APT EL Q
Sbjct: 192 PGDGPIVLV-LAPTRELAVQ 210
Score = 103 (41.3 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISE 340
+T + +A V +RG+D K + V N+D P + EDYVH ++ K A+ + +
Sbjct: 416 RTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTS 475
Query: 341 ENAIYATDLVKAFELSE 357
+NA A +LV LSE
Sbjct: 476 DNAKQARELVSI--LSE 490
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 156 (60.0 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ D+L +K+ + +V+ LVLDEADRM DMGFEPQI +IV I P RQ ++++ T+
Sbjct: 566 GRLNDIL---EMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATW 622
Query: 275 PPRVEILA 282
P V +A
Sbjct: 623 PKEVRKIA 630
Score = 145 (56.1 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 46/147 (31%), Positives = 67/147 (45%)
Query: 85 LRKNFYTQAREITRMSPA--YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHE 142
+R +F T ++ +SP YRKQ ++ + P P T+ +GL +IL
Sbjct: 398 VRPHFVTSP-DVPHLSPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFP 456
Query: 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLP---MLRHIWEQXXXXXXXXXXXXX 199
+P IQA + + D VAI +TGSGKTL +L+P +LRH
Sbjct: 457 SPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLI---- 512
Query: 200 XMAPTGELVRQ----QVRRGRMIDLLC 222
+APT EL Q +R GR + C
Sbjct: 513 -LAPTRELATQIQDEALRFGRSSRISC 538
Score = 134 (52.2 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 283 RKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFIS 339
R C L IA V ARGLD K++ +VIN+D P EDYVH ++ AF F +
Sbjct: 726 RSGKSCVL-IATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFT 784
Query: 340 EENAIYATDLVKAFELSELVVRDDLKAVA 368
E++ YA DL+K E + V ++ +A
Sbjct: 785 EQDWKYAPDLIKVLEGANQQVPPQVRDIA 813
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 182 (69.1 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL N V NL +TYLVLDEAD+M DMGFEPQI +I+ ++RPDRQ V+ S T+
Sbjct: 374 GRLNDLQMSNFV---NLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATW 430
Query: 275 PPRVEILAR 283
P V LA+
Sbjct: 431 PHSVHRLAQ 439
Score = 140 (54.3 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
Identities = 40/142 (28%), Positives = 66/142 (46%)
Query: 81 DYQQLRKNFYTQAREITRMSP----AYRKQL------DLKIREKCA-PKPIKTWRQT-GL 128
D ++KNFY ++ + MS ++RK+ DLK EK P P T+
Sbjct: 190 DLPPIKKNFYKESTATSAMSKVEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDDAFQC 249
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
+++E K + P IQ+ A +++ G+D + + +TG+GKTL +L+P H+ Q
Sbjct: 250 YPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPS 309
Query: 189 XXXXXXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 310 LKGQRNRPGMLVLTPTRELALQ 331
Score = 93 (37.8 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
Identities = 24/93 (25%), Positives = 47/93 (50%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
KT + IA + +RGLD ++ V NFD P + E+YVH ++ + ++
Sbjct: 534 KTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTR 593
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIA 373
+ A++L+ E + + ++L ++A+ F A
Sbjct: 594 NDWRVASELINILERANQSIPEELVSMAERFKA 626
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 223 KNGVKITNLTRVTYLVLDE 241
+ GV IT LTR + V E
Sbjct: 583 RTGVSITTLTRNDWRVASE 601
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 199 (75.1 bits), Expect = 2.8e-26, Sum P(4) = 2.8e-26
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K K TNL RV+YLV DEADRMFDMGFE Q+ I ++RPDRQ +LFS TF
Sbjct: 385 GRLIDHVKK---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATF 441
Query: 275 PPRVEILAR 283
++E LAR
Sbjct: 442 RKKIEKLAR 450
Score = 129 (50.5 bits), Expect = 2.8e-26, Sum P(4) = 2.8e-26
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P+P ++ G +++ K + P IQ + +SG D + I +TGSGKT AF+
Sbjct: 249 PRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFI 308
Query: 177 LPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
PML HI +Q + PT EL +Q
Sbjct: 309 WPMLIHIMDQKELEPGDGPIAVI-VCPTRELCQQ 341
Score = 89 (36.4 bits), Expect = 2.8e-26, Sum P(4) = 2.8e-26
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A V ARGLD ++ VIN+D D + + H ++ K A+ ++ +++ +A D
Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV+ E + V +L +A
Sbjct: 613 LVRNLEGANQHVSKELLDLA 632
Score = 40 (19.1 bits), Expect = 2.8e-26, Sum P(4) = 2.8e-26
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 17 DPLDAFMNDME 27
DPL+AFM ++E
Sbjct: 114 DPLEAFMAEVE 124
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 163 (62.4 bits), Expect = 4.2e-26, Sum P(3) = 4.2e-26
Identities = 36/69 (52%), Positives = 47/69 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL N + NL +TYL +EADRM DMGFEPQI +I+ ++RPDRQ V+ S T+
Sbjct: 372 GRLNDLQMNNFI---NLKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATW 427
Query: 275 PPRVEILAR 283
P V LA+
Sbjct: 428 PDGVRRLAK 436
Score = 156 (60.0 bits), Expect = 4.2e-26, Sum P(3) = 4.2e-26
Identities = 45/142 (31%), Positives = 65/142 (45%)
Query: 81 DYQQLRKNFYTQAREITRMSPA----YRKQL------DLKIREK-CAPKPIKTWRQT-GL 128
D + KNFY ++ MSP +RK+ DLK EK C P P+ +
Sbjct: 188 DLPPIEKNFYKESSRTACMSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDVFEQ 247
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
I+ K + P IQ+ A +I+ G+D + I +TG+GKTLA+L+P H+ Q
Sbjct: 248 YPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPI 307
Query: 189 XXXXXXXXXXXXMAPTGELVRQ 210
+APT EL Q
Sbjct: 308 PKDKRGGPGMLVLAPTRELALQ 329
Score = 96 (38.9 bits), Expect = 4.2e-26, Sum P(3) = 4.2e-26
Identities = 24/91 (26%), Positives = 49/91 (53%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFISE 340
K + +A + +RGLD ++ V NFD P + E+YVH ++ A I++
Sbjct: 531 KKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITK 590
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
++ A++L+ + ++ VV D+L ++A+ +
Sbjct: 591 KDWKAASELIDILQRAKQVVPDELISMAERY 621
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 167 (63.8 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL N V NL +TYLVLDEAD+M D+GFE QI +I+ ++RPDRQ ++ S T+
Sbjct: 347 GRLNDLQMNNFV---NLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATW 403
Query: 275 PPRVEILA 282
P + LA
Sbjct: 404 PDTIRQLA 411
Score = 154 (59.3 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 44/152 (28%), Positives = 73/152 (48%)
Query: 72 EIIK-SKIKIDYQQLRKNFYTQAREITRMSPA----YRKQL------DLKIREKCA-PKP 119
E+++ K K D + KNFY + + + MS +RK+ DLK EK P P
Sbjct: 153 EVVEWEKRKWDLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNP 212
Query: 120 IKTWRQT-GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLP 178
I + G +++++ K + P IQ+ A +++ G+D + I +TG+GKTL++L+P
Sbjct: 213 ICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMP 272
Query: 179 MLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
H+ Q + PT EL Q
Sbjct: 273 GFIHLNSQPVSRGKRNGPGMLVLTPTRELALQ 304
Score = 85 (35.0 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 20/91 (21%), Positives = 48/91 (52%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFISE 340
KT + IA + +RGLD ++ V N++ P + E+YVH ++ + +++
Sbjct: 507 KTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQ 566
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
++ A +L++ + + + +DL ++A+ +
Sbjct: 567 DDWKVAGELIEILQRANQSIPEDLLSMAEQY 597
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 172 (65.6 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 37/69 (53%), Positives = 49/69 (71%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL N V + + +TYLVLDEAD+M DMGFEPQI +I+ ++RPDRQ V+ S T+
Sbjct: 373 GRLHDLQMNNFVYLKS---ITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATW 429
Query: 275 PPRVEILAR 283
P V LA+
Sbjct: 430 PYAVRRLAQ 438
Score = 135 (52.6 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 85 LRKNFYTQAREITRMSPA----YRKQL------DLKIREKCA-PKPIKTWRQT-GLTTKI 132
++KNFY ++ + + MS +RK+ DLK EK P P + ++
Sbjct: 193 VKKNFYIESEKTSSMSQEQVDNWRKENYNIICDDLKDGEKRPLPNPTCNFEDAFHCYPEV 252
Query: 133 LETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXX 192
+ K + P IQ+ A +I+ G+D + + +TG+GKTL++L+P HI Q
Sbjct: 253 MRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQRA 312
Query: 193 XXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 313 RNGPGMLVLTPTRELALQ 330
Score = 93 (37.8 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
KT + IA + +RGLD ++ V N+D P + E+YVH ++ + I+
Sbjct: 533 KTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITR 592
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIA 373
+ A +L+ E + V +DL ++A+ + A
Sbjct: 593 NDWKIAGELINILERANQSVPEDLVSMAERYKA 625
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 167 (63.8 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL N V NL +TYLVLDEAD+M D+GFE QI +I+ ++RPDRQ ++ S T+
Sbjct: 356 GRLNDLQMNNFV---NLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATW 412
Query: 275 PPRVEILA 282
P + LA
Sbjct: 413 PDTIRQLA 420
Score = 147 (56.8 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 41/142 (28%), Positives = 67/142 (47%)
Query: 81 DYQQLRKNFYTQAREITRMSPA----YRKQL------DLKIREKCA-PKPIKTWRQT-GL 128
D + KNFY + + + MS +RK+ DLK EK P PI + G
Sbjct: 172 DLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNPICKFEDAFGP 231
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
+++++ K + P IQ+ A +++ G+D + I +TG+GKTL++L+P H+ Q
Sbjct: 232 YPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPV 291
Query: 189 XXXXXXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 292 SRGKRNGPGMLVLTPTRELALQ 313
Score = 85 (35.0 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 20/91 (21%), Positives = 48/91 (52%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFISE 340
KT + IA + +RGLD ++ V N++ P + E+YVH ++ + +++
Sbjct: 516 KTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQ 575
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
++ A +L++ + + + +DL ++A+ +
Sbjct: 576 DDWKVAGELIEILQRANQSIPEDLLSMAEQY 606
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 154 (59.3 bits), Expect = 5.2e-24, Sum P(3) = 5.2e-24
Identities = 38/70 (54%), Positives = 44/70 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL +GV +L VTY+VLDEADRM DMGFE I RI+ IRPDR L S T+
Sbjct: 221 GRLTDL-SNDGV--ISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRLVALTSATW 277
Query: 275 PPRVEILARK 284
P V L K
Sbjct: 278 PEGVRKLTDK 287
Score = 144 (55.7 bits), Expect = 5.2e-24, Sum P(3) = 5.2e-24
Identities = 37/102 (36%), Positives = 58/102 (56%)
Query: 83 QQLRKNFYTQAREITRMSPAYRKQLDLKIREKCAPKPIKTWRQT-GLTTKILETFSKLNH 141
+QL++ YT + ++ P +R++ +KI P P+ ++ Q G I+ K
Sbjct: 53 EQLQE-LYTNGG-VMKVYP-FREESTVKI-----PPPVNSFEQAFGSNASIMGEIRKNGF 104
Query: 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183
E P IQ+ L++SG D + +++TGSGKTLAFLLP L HI
Sbjct: 105 EKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHI 146
Score = 93 (37.8 bits), Expect = 5.2e-24, Sum P(3) = 5.2e-24
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A + +RG+D ++ V+N+D P D E+YVH ++ K A F+ +
Sbjct: 393 VATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEG 452
Query: 349 LVKAFELSELVVRDDLKAVADSFIAK 374
L++ E SE V D L+ A+ + K
Sbjct: 453 LIQILEKSEQEVPDQLRRDAEKYRLK 478
Score = 43 (20.2 bits), Expect = 7.3e-19, Sum P(3) = 7.3e-19
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 400 RRGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGGDISHQ 439
R G+ RK +A + + D+S+ E + + KS ++ Q
Sbjct: 428 RTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQ 467
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 159 (61.0 bits), Expect = 8.6e-24, Sum P(3) = 8.6e-24
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL N V NL +TYLVLDEAD+M D+GFE QI +I+ ++RPDRQ V+ + ++
Sbjct: 333 GRLNDLQMNNFV---NLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTTASW 389
Query: 275 PPRVEILAR 283
P LA+
Sbjct: 390 PDSTRRLAQ 398
Score = 135 (52.6 bits), Expect = 8.6e-24, Sum P(3) = 8.6e-24
Identities = 40/142 (28%), Positives = 67/142 (47%)
Query: 81 DYQQLRKNFYTQAREITRMSPA----YRKQL------DLKIREKCA-PKPIKTWRQTGLT 129
D ++KN Y +++ +S A +RK+ DL EK PKP T+
Sbjct: 149 DLPPIKKNLYIESKATHSLSEAQVEIWRKENFNIRCDDLTEGEKRPIPKPTCTFEDAFQQ 208
Query: 130 -TKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
+I+++ + + P IQ+ + +I+ G+D + I +TG+GKTL++L+P HI Q
Sbjct: 209 YPEIMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQPV 268
Query: 189 XXXXXXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 269 SRKQRNGPGMLVLTPTRELALQ 290
Score = 98 (39.6 bits), Expect = 8.6e-24, Sum P(3) = 8.6e-24
Identities = 23/91 (25%), Positives = 48/91 (52%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFISE 340
+T + IA + ARGLD ++ V N++ P + E+YVH ++ + +++
Sbjct: 493 RTGRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQ 552
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
++ A +L+K + + +V L+++AD F
Sbjct: 553 DDWKIADELIKILQRANQIVPPSLRSMADRF 583
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 174 (66.3 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 37/68 (54%), Positives = 47/68 (69%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL N V NL +TYLV+DEAD+M DM FEPQI +I+ ++RPDRQ V+ S T+
Sbjct: 354 GRLNDLQMNNSV---NLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 410
Query: 275 PPRVEILA 282
P V LA
Sbjct: 411 PDTVRQLA 418
Score = 131 (51.2 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 39/139 (28%), Positives = 67/139 (48%)
Query: 81 DYQQLRKNFYTQAREITRMSPA----YRKQL------DLKIREK-CAPKPIKTWRQTGLT 129
D ++KNFY +++ + MS +RK+ DLK EK PKP ++
Sbjct: 170 DLPPVKKNFYIESKATSCMSEMQVINWRKENFNITCDDLKSGEKRLIPKPTCRFKDAFQQ 229
Query: 130 -TKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
+L++ ++ P IQ+ A +I+ G+D + + +TG+GKTL++L+P H+ Q
Sbjct: 230 YPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI 289
Query: 189 XXXXXXXXXXXXMAPTGEL 207
+ PT EL
Sbjct: 290 SREQRNGPGMLVLTPTREL 308
Score = 85 (35.0 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 23/96 (23%), Positives = 49/96 (51%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH---HCCQSWLKSCAFRFISE 340
K+ + I + +RGLD ++ V N+D P + + YVH + ++ + I++
Sbjct: 514 KSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQ 573
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVN 376
++ A +L+K + + V +DL +A+ + K+N
Sbjct: 574 RDSKMAGELIKILDRANQSVPEDLVVMAEQY--KLN 607
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 158 (60.7 bits), Expect = 1.7e-23, Sum P(4) = 1.7e-23
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ D+L +K +L +V+YLVLDEADRM DMGFEPQI +IV + RQ ++++ T+
Sbjct: 360 GRLNDIL---EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATW 416
Query: 275 PPRVEILARK--TNVCNLSIAN 294
P V +A N ++I N
Sbjct: 417 PKEVRKIAADLLVNPAQVNIGN 438
Score = 132 (51.5 bits), Expect = 1.7e-23, Sum P(4) = 1.7e-23
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFISEENAIYATD 348
+A V ARGLD K++ +V+N+D PN EDYVH ++ A+ F +++A +A+D
Sbjct: 528 VATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASD 587
Query: 349 LVKAFELSELVVRDDLKAVA 368
L+K E + V ++ +A
Sbjct: 588 LIKILEGANQKVPPQVREMA 607
Score = 94 (38.1 bits), Expect = 1.7e-23, Sum P(4) = 1.7e-23
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAP 203
P IQA + + + D VAI +TGSGKTL +L+P H+ Q ++P
Sbjct: 252 PSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL--QRIHNDSRMGPTILVLSP 309
Query: 204 TGELVRQ 210
T EL Q
Sbjct: 310 TRELATQ 316
Score = 46 (21.3 bits), Expect = 1.7e-23, Sum P(4) = 1.7e-23
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 99 MSP-AYRKQLDLKIREKCAPKPIKTWRQTGLTTKIL 133
+SP AY ++ ++ + P P+ ++ TGL ++L
Sbjct: 138 LSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELL 173
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 143 (55.4 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 32/72 (44%), Positives = 50/72 (69%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN----IRPDRQAVLF 270
GR+ DL+ + KI L++V YLVLDEADRM DMGFEP++ ++V + + +RQ ++F
Sbjct: 413 GRLHDLIGRG--KI-GLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLMF 469
Query: 271 SPTFPPRVEILA 282
S T+P ++ +A
Sbjct: 470 SATYPEDIQRMA 481
Score = 133 (51.9 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 32/97 (32%), Positives = 46/97 (47%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
PK I T+ + GL + + SK + P +Q +I +G D +A +TGSGKT AFL
Sbjct: 273 PKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFL 332
Query: 177 LPMLRHIWEQXXXXXXXXXXX---XXXMAPTGELVRQ 210
LP+L+ +APT EL+ Q
Sbjct: 333 LPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQ 369
Score = 114 (45.2 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC-----CQSWLKSCAFRFISEEN 342
C + +A SV ARGLD ++++ V+NFD P+ ++YVH C + ++ +F F E +
Sbjct: 580 CPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSF-FNPESD 638
Query: 343 AIYATDLVKAFELSELVVRDDLKAVADS 370
A LVK ++ VV L+ VA S
Sbjct: 639 TPLARSLVKVLSGAQQVVPKWLEEVAFS 666
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 162 (62.1 bits), Expect = 7.3e-23, Sum P(3) = 7.3e-23
Identities = 43/144 (29%), Positives = 70/144 (48%)
Query: 75 KSKIKIDYQQLRKNFYTQAR--EITRMS-PAYRKQLDLKIREKCAPKPIKTWRQTGLTTK 131
K K K D Q+ +++ E+T +R+ ++ I+ P PI++W ++G +
Sbjct: 345 KMKRKEDKQKWDDRHWSEKENDEMTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKE 404
Query: 132 ILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXX 191
I++ K+ ++ P IQ A + + D + + ETGSGKTLAFL+P+L W Q
Sbjct: 405 IIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS--WIQSLPKI 462
Query: 192 XXXXXX-----XXXMAPTGELVRQ 210
MAPT EL +Q
Sbjct: 463 ERLEDVDQGPYAIIMAPTRELAQQ 486
Score = 124 (48.7 bits), Expect = 7.3e-23, Sum P(3) = 7.3e-23
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ-----NIRPDRQ 266
GR+ID+L +N + N + TY+VLDEADRM DMGFEP + +I++ N++PD +
Sbjct: 530 GRLIDVL-ENRYLVLN--QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 583
Score = 102 (41.0 bits), Expect = 7.3e-23, Sum P(3) = 7.3e-23
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 280 ILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFR 336
+ A K+ ++ +A V RG+D K++ LVIN+D EDY H ++ CA
Sbjct: 709 LAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAIS 768
Query: 337 FISEENAIYATDLVKAFELS 356
F++++++ DL + S
Sbjct: 769 FVTKDDSALFYDLKQCVSAS 788
Score = 64 (27.6 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 216 RMIDLLCKNGV-KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI---RPDRQAVLFS 271
RMID+ + V KI VT L D + E + T++++N + RQ V+F+
Sbjct: 556 RMIDMGFEPDVQKILEYMPVTNLKPDTEEA------EDE-TKLMENFYTKKKYRQTVMFT 608
Query: 272 PTFPPRVEILAR 283
T PP VE LAR
Sbjct: 609 ATMPPAVERLAR 620
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 193 (73.0 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 46/112 (41%), Positives = 67/112 (59%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL ++ NL +TYLVLDEADRM DMGFEPQI +I+ +IRPDRQ V+ S T+
Sbjct: 410 GRLNDLQMN---ELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATW 466
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELVINFDAPNDYE-DYVH 323
PP V LA+ + + ++ ++ ++ L + D DY D++H
Sbjct: 467 PPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIH 518
Score = 148 (57.2 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 43/142 (30%), Positives = 69/142 (48%)
Query: 81 DYQQLRKNFYTQAREITRMSPA----YRKQL------DLKIREK-CAPKPIKTWRQT-GL 128
D L+KNFY +A+ + S +RK+ DLK +K P P+ T+ +
Sbjct: 226 DLPVLKKNFYIEAKSVAARSAEEVKIWRKENNNIFVDDLKDGDKRTIPNPVCTFEEAFAH 285
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
I+E ++ + P IQ+ A ++++G+D + I +TG+GKTLA+LLP H+ Q
Sbjct: 286 YPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPM 345
Query: 189 XXXXXXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 346 PRDKRNGPGMLVLTPTRELALQ 367
Score = 82 (33.9 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSCA---FRFISEENAIYATD 348
+A + +RGLD ++ V N+D P + E+YVH ++ + ++ E+ A +
Sbjct: 578 VATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAE 637
Query: 349 LVKAFELSELVVRDDLKAVADSF 371
L+ E S V ++L +A+ +
Sbjct: 638 LITILERSGQDVPEELVLMAERY 660
Score = 42 (19.8 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 102 AYRKQLDLKIREKCAPKPIKTWR 124
A KQL L + P P+K+WR
Sbjct: 14 AVSKQLTLPAK----PAPVKSWR 32
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 152 (58.6 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 31/70 (44%), Positives = 46/70 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + + + N +++LV+DEADR+ +MGFE QI I +IRPDRQ + +S T+
Sbjct: 271 GRIIDFMESGDLSLKN---ISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATW 327
Query: 275 PPRVEILARK 284
P +V A K
Sbjct: 328 PKKVSSFAEK 337
Score = 138 (53.6 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 39/129 (30%), Positives = 61/129 (47%)
Query: 85 LRKNFYTQAREITRMSPAYRKQLDLKIREK---CAPKPIKTWRQTGLTTKILETFSKLNH 141
+RK E + + + K+ ++ I+++ PKPI T + I SK
Sbjct: 101 IRKRLIDLPTEDQQETMDFIKEFEISIKKENNFYLPKPIDTIESVPFQSTIKNFLSK-KF 159
Query: 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXM 201
E P +Q+ + +SG D + I++TGSGKTL+F+LP + HI Q +
Sbjct: 160 EKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPGPSVLV-V 218
Query: 202 APTGELVRQ 210
APT EL Q
Sbjct: 219 APTRELANQ 227
Score = 87 (35.7 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K ++ +A V +RGLD K + VINF P+D E YVH
Sbjct: 437 KNKRLDIVVATDVASRGLDIKGISHVINFSLPSDCETYVH 476
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 169 (64.5 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 37/69 (53%), Positives = 49/69 (71%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL N V + + ++YLVLDEAD+M DMGFEPQI +I+ +IRPDRQ V+ S T+
Sbjct: 376 GRLNDLQMNNFVYLKS---ISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMTSATW 432
Query: 275 PPRVEILAR 283
P V LA+
Sbjct: 433 PYAVRRLAQ 441
Score = 118 (46.6 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 33/114 (28%), Positives = 57/114 (50%)
Query: 85 LRKNFYTQAREITRMSPA----YRKQL------DLKIREKCA-PKPIKTWRQT-GLTTKI 132
++KNFY ++ + MS +RK+ DLK EK P P + ++
Sbjct: 193 IKKNFYMESEITSSMSQEQVQNWRKENYNIMCDDLKDGEKRPIPNPACKFEDAFQCYPEV 252
Query: 133 LETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+ K + P IQ+ A +I+ G+D + + +TG+GKTL++L+P H+ Q
Sbjct: 253 MINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQ 306
Score = 89 (36.4 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
KT + IA + +RGLD ++ V N+D P + E+YVH ++ + I+
Sbjct: 536 KTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITR 595
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIA 373
+ A +L+ E + + +DL +A+ + A
Sbjct: 596 SDWKIAGELIHILERANQSIPEDLVEMAERYKA 628
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 169 (64.5 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 41/73 (56%), Positives = 51/73 (69%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P RQ ++F
Sbjct: 357 GRLLDMM-ERG-KI-GLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMF 413
Query: 271 SPTFPPRVEILAR 283
S TFP ++ILAR
Sbjct: 414 SATFPKEIQILAR 426
Score = 105 (42.0 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS--- 332
R E L + ++ C + +A +V ARGLD ++ VINFD P+D E+YVH ++
Sbjct: 512 REEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 571
Query: 333 CAFRFISEENAIYATDLV 350
A F +++N DL+
Sbjct: 572 LATSFFNDKNGNITKDLL 589
Score = 103 (41.3 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P+PI + + I+ + + P +Q A +I S D +A +TGSGKT AFL
Sbjct: 204 PQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFL 263
Query: 177 LPMLRHIW 184
LP+L I+
Sbjct: 264 LPVLSQIY 271
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 211 (79.3 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 43/70 (61%), Positives = 54/70 (77%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID++ N TNL RVTYLVLDEADRM DMGF+PQI +IV +IRPDRQ + +S T+
Sbjct: 231 GRLIDMMESNN---TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATW 287
Query: 275 PPRVEILARK 284
P VE L++K
Sbjct: 288 PKEVEQLSKK 297
Score = 187 (70.9 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 53/188 (28%), Positives = 86/188 (45%)
Query: 77 KIKID-YQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTK 131
K+ +D KNFY ++ + M+ YRK ++ + K PKP+K++R G
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 132 ILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXX 191
+LE K P IQ+ + + G D + I ETGSGKTL++LLP + H+ Q
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 192 XXXXXXXXXMAPTGEL---VRQQVRR---GRMIDLLC-----KNGVKITNLTRVTYLVLD 240
+APT EL ++Q+ + I C G ++ +L + +V+
Sbjct: 170 GDGPIVLV-LAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIA 228
Query: 241 EADRMFDM 248
R+ DM
Sbjct: 229 TPGRLIDM 236
Score = 114 (45.2 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 293 ANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIYATDL 349
A V ARGLD K+++ VIN+D P EDYVH ++ K A+ F + NA +A +L
Sbjct: 400 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKEL 459
Query: 350 VKAFELSELVVRDDLKAVADS 370
+ + V +L ++ S
Sbjct: 460 TNILQEAGQKVSPELASMGRS 480
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 146 (56.5 bits), Expect = 8.3e-22, Sum P(4) = 8.3e-22
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+R+ + + P PI+ W++ L ILE K +++P IQ A + + D +
Sbjct: 360 FREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDII 419
Query: 163 AITETGSGKTLAFLLPMLRHIW 184
+ ETGSGKT AFL+P+L +W
Sbjct: 420 GVAETGSGKTAAFLIPLL--VW 439
Score = 122 (48.0 bits), Expect = 8.3e-22, Sum P(4) = 8.3e-22
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261
GR+ID+L +N + L+R TY+VLDEADRM DMGFEP + +I++ I
Sbjct: 514 GRLIDVL-ENRYLV--LSRCTYVVLDEADRMIDMGFEPDVQKILEYI 557
Score = 91 (37.1 bits), Expect = 8.3e-22, Sum P(4) = 8.3e-22
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KS-CAFRFISE 340
K ++ +A V RG+D +++ +V+N+D + EDY+H ++ KS A F+++
Sbjct: 698 KAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTK 757
Query: 341 ENAIYATDLVKA 352
E++ DL +A
Sbjct: 758 EDSSVFYDLKQA 769
Score = 59 (25.8 bits), Expect = 8.3e-22, Sum P(4) = 8.3e-22
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 265 RQAVLFSPTFPPRVEILAR 283
RQ V+F+ T PP VE LAR
Sbjct: 587 RQTVMFTATMPPAVERLAR 605
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 147 (56.8 bits), Expect = 8.5e-22, Sum P(4) = 8.5e-22
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+R+ + + P PI++W+ + L ILE K ++ P IQ A + + D +
Sbjct: 372 FREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 431
Query: 163 AITETGSGKTLAFLLPMLRHIW 184
+ ETGSGKT AFL+P+L +W
Sbjct: 432 GVAETGSGKTAAFLIPLL--VW 451
Score = 123 (48.4 bits), Expect = 8.5e-22, Sum P(4) = 8.5e-22
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266
GR+ID+L +N + L+R TY+VLDEADRM DMGFEP + +I++++ Q
Sbjct: 526 GRLIDVL-ENRYLV--LSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 574
Score = 89 (36.4 bits), Expect = 8.5e-22, Sum P(4) = 8.5e-22
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KS-CAFRFISE 340
K ++ +A V RG+D +++ +V+N+D + EDY+H ++ KS A F+++
Sbjct: 710 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 769
Query: 341 ENAIYATDLVKA 352
E++ +L +A
Sbjct: 770 EDSAVFYELKQA 781
Score = 59 (25.8 bits), Expect = 8.5e-22, Sum P(4) = 8.5e-22
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 265 RQAVLFSPTFPPRVEILAR 283
RQ V+F+ T PP VE LAR
Sbjct: 599 RQTVMFTATMPPAVERLAR 617
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 147 (56.8 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+R+ + + P PI++W+ + L ILE K ++ P IQ A + + D +
Sbjct: 373 FREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 163 AITETGSGKTLAFLLPMLRHIW 184
+ ETGSGKT AFL+P+L +W
Sbjct: 433 GVAETGSGKTAAFLIPLL--VW 452
Score = 123 (48.4 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266
GR+ID+L +N + L+R TY+VLDEADRM DMGFEP + +I++++ Q
Sbjct: 527 GRLIDVL-ENRYLV--LSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 89 (36.4 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KS-CAFRFISE 340
K ++ +A V RG+D +++ +V+N+D + EDY+H ++ KS A F+++
Sbjct: 711 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 770
Query: 341 ENAIYATDLVKA 352
E++ +L +A
Sbjct: 771 EDSAVFYELKQA 782
Score = 59 (25.8 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 265 RQAVLFSPTFPPRVEILAR 283
RQ V+F+ T PP VE LAR
Sbjct: 600 RQTVMFTATMPPAVERLAR 618
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 147 (56.8 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+R+ + + P PI++W+ + L ILE K ++ P IQ A + + D +
Sbjct: 373 FREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 163 AITETGSGKTLAFLLPMLRHIW 184
+ ETGSGKT AFL+P+L +W
Sbjct: 433 GVAETGSGKTAAFLIPLL--VW 452
Score = 123 (48.4 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266
GR+ID+L +N + L+R TY+VLDEADRM DMGFEP + +I++++ Q
Sbjct: 527 GRLIDVL-ENRYLV--LSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 89 (36.4 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KS-CAFRFISE 340
K ++ +A V RG+D +++ +V+N+D + EDY+H ++ KS A F+++
Sbjct: 711 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 770
Query: 341 ENAIYATDLVKA 352
E++ +L +A
Sbjct: 771 EDSAVFYELKQA 782
Score = 59 (25.8 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 265 RQAVLFSPTFPPRVEILAR 283
RQ V+F+ T PP VE LAR
Sbjct: 600 RQTVMFTATMPPAVERLAR 618
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 147 (56.8 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+R+ + + P PI++W+ + L ILE K ++ P IQ A + + D +
Sbjct: 373 FREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 163 AITETGSGKTLAFLLPMLRHIW 184
+ ETGSGKT AFL+P+L +W
Sbjct: 433 GVAETGSGKTAAFLIPLL--VW 452
Score = 123 (48.4 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266
GR+ID+L +N + L+R TY+VLDEADRM DMGFEP + +I++++ Q
Sbjct: 527 GRLIDVL-ENRYLV--LSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 89 (36.4 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KS-CAFRFISE 340
K ++ +A V RG+D +++ +V+N+D + EDY+H ++ KS A F+++
Sbjct: 711 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 770
Query: 341 ENAIYATDLVKA 352
E++ +L +A
Sbjct: 771 EDSAVFYELKQA 782
Score = 59 (25.8 bits), Expect = 8.6e-22, Sum P(4) = 8.6e-22
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 265 RQAVLFSPTFPPRVEILAR 283
RQ V+F+ T PP VE LAR
Sbjct: 600 RQTVMFTATMPPAVERLAR 618
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 147 (56.8 bits), Expect = 8.8e-22, Sum P(3) = 8.8e-22
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI----RPDRQAVLF 270
GR++D++ K KI LT++ YLVLDEADRM DMGF I ++++ + +RQ ++F
Sbjct: 422 GRLLDVIRKE--KI-GLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEERQTLMF 478
Query: 271 SPTFPPRVEILARK 284
S TFP ++ LAR+
Sbjct: 479 SATFPSSIQSLARE 492
Score = 121 (47.7 bits), Expect = 8.8e-22, Sum P(3) = 8.8e-22
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P I T+ + L + + K + IQ + +I++G D +A +TGSGKT AFL
Sbjct: 282 PPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFL 341
Query: 177 LPMLRHIWEQXXXXXXXXXXX---XXXMAPTGELVRQ 210
LP+L H+ + +APT EL+ Q
Sbjct: 342 LPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQ 378
Score = 109 (43.4 bits), Expect = 8.8e-22, Sum P(3) = 8.8e-22
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+T C + +A SV ARGLD + + VINFD P+D ++YVH
Sbjct: 585 RTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVH 624
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 170 (64.9 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 41/73 (56%), Positives = 51/73 (69%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRP---DRQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P RQ ++F
Sbjct: 373 GRLVDMM-ERG-KI-GLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMF 429
Query: 271 SPTFPPRVEILAR 283
S TFP ++ILAR
Sbjct: 430 SATFPKEIQILAR 442
Score = 106 (42.4 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS--- 332
R E L + ++ C + +A +V ARGLD ++ VINFD P+D E+YVH ++
Sbjct: 528 REEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 587
Query: 333 CAFRFISEENAIYATDLV 350
A F +++N+ DL+
Sbjct: 588 LATSFYNDKNSNITKDLL 605
Score = 96 (38.9 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
+P I+++ + I+ + + P +Q A +I + D +A +TGSGKT AF
Sbjct: 218 SPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAF 277
Query: 176 LLPMLRHIWEQ 186
LLP+L I+ +
Sbjct: 278 LLPVLSQIYSE 288
>UNIPROTKB|D6RJA6 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
EMBL:CH471062 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:Hs.406549 HGNC:HGNC:18681 ChiTaRS:DDX46 EMBL:AC006077
EMBL:AC010301 IPI:IPI00967303 SMR:D6RJA6 Ensembl:ENST00000507392
Uniprot:D6RJA6
Length = 471
Score = 263 (97.6 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 66/186 (35%), Positives = 96/186 (51%)
Query: 79 KIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI+Y+ RKNFY + E+ +MS +R +++ + ++ K PKPIK+W Q G++ KIL
Sbjct: 277 KIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKIL 336
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
+ K +E P IQ A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 337 NSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGE 396
Query: 194 XXXXXXXMAPTGELVRQQVRRGRMID------LLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + ++C G +I L R +++
Sbjct: 397 GPIAVI-MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 455
Query: 243 DRMFDM 248
RM DM
Sbjct: 456 GRMIDM 461
Score = 46 (21.3 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 15 EIDPLDAFMNDME 27
E+DPLDA+M +++
Sbjct: 176 ELDPLDAYMEEVK 188
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 137 (53.3 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D VK L +V LVLDEADRM DMGF P + R+++ + P RQ + FS TF
Sbjct: 140 GRLLD---HAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATF 196
Query: 275 PPRVEILA 282
+++ +A
Sbjct: 197 DSKIKAVA 204
Score = 132 (51.5 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ Q GL +++L T S+L NP IQ A ++ G D +A +TG+GKT AF LP+++
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 182 HIWEQX-XXXXXXXXXXXXXMAPTGELVRQ 210
EQ + PT EL +Q
Sbjct: 67 RFIEQPWQREANSKEIRALVLVPTRELAQQ 96
Score = 93 (37.8 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
IA V ARGLD +LE V+N+D P EDYVH
Sbjct: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVH 337
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 137 (53.3 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D VK L +V LVLDEADRM DMGF P + R+++ + P RQ + FS TF
Sbjct: 140 GRLLD---HAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATF 196
Query: 275 PPRVEILA 282
+++ +A
Sbjct: 197 DSKIKAVA 204
Score = 132 (51.5 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ Q GL +++L T S+L NP IQ A ++ G D +A +TG+GKT AF LP+++
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 182 HIWEQX-XXXXXXXXXXXXXMAPTGELVRQ 210
EQ + PT EL +Q
Sbjct: 67 RFIEQPWQREANSKEIRALVLVPTRELAQQ 96
Score = 93 (37.8 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
IA V ARGLD +LE V+N+D P EDYVH
Sbjct: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVH 337
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 146 (56.5 bits), Expect = 5.0e-21, Sum P(3) = 5.0e-21
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN----IRPDRQAVLF 270
GR++D++ + V L++V +LVLDEADRM DMGFEP + R+V + + +RQ ++F
Sbjct: 317 GRLLDMIGRGKV---GLSKVRHLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEERQTLMF 373
Query: 271 SPTFPPRVEILA 282
S TFP ++ LA
Sbjct: 374 SATFPEDIQRLA 385
Score = 118 (46.6 bits), Expect = 5.0e-21, Sum P(3) = 5.0e-21
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P I T+ + L + S+ + P +Q +I +G D +A +TGSGKT AFL
Sbjct: 177 PAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFL 236
Query: 177 LPMLRHIWEQXXXXXXXXXXX---XXXMAPTGELVRQQVRRGR 216
LP+L+ + +APT EL+ Q + R
Sbjct: 237 LPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEAR 279
Score = 103 (41.3 bits), Expect = 5.0e-21, Sum P(3) = 5.0e-21
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ C + +A SV +RGLD +++ V+NFD PN +DYVH
Sbjct: 480 RSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVH 519
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 137 (53.3 bits), Expect = 5.2e-21, Sum P(3) = 5.2e-21
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L +NG I NL + Y+V+DEADR+ DMGFE Q+ +I+ + ++Q + + T+
Sbjct: 486 GRLLDFL-ENG-NI-NLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATW 542
Query: 275 PPRVEILA 282
P +V LA
Sbjct: 543 PEQVRKLA 550
Score = 128 (50.1 bits), Expect = 5.2e-21, Sum P(3) = 5.2e-21
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL-----KSCAF--- 335
KT+ CN+ +A V +RGLD K + +VIN+D PN EDY+H ++ KS F
Sbjct: 647 KTDRCNILVATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSY 706
Query: 336 RFISEENAIYATDLVKAFELSELVVRDDLKAVADS 370
+ + +A +L+K + V LK +A S
Sbjct: 707 DYYMPQKLKFAKELIKLLNKTNQTVPPQLKEIAYS 741
Score = 106 (42.4 bits), Expect = 5.2e-21, Sum P(3) = 5.2e-21
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 139 LNHE--NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183
LN++ P AIQ + +SG D + + ETGSGKTLAF+LP HI
Sbjct: 303 LNNKFSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHI 349
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 156 (60.0 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD--RQAVLFS 271
GR+ID++ + G L YLVLDEADRM DMGFEPQI +IV Q + P R +FS
Sbjct: 282 GRLIDII-EQG--FIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFS 338
Query: 272 PTFPPRVEILAR 283
TFP +++LA+
Sbjct: 339 ATFPKEIQVLAK 350
Score = 116 (45.9 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 20/79 (25%), Positives = 44/79 (55%)
Query: 105 KQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAI 164
+ + +++ P I+ + + G ++E ++ + P +Q + +++ D ++
Sbjct: 123 ENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSC 182
Query: 165 TETGSGKTLAFLLPMLRHI 183
+TGSGKT AFLLP+++HI
Sbjct: 183 AQTGSGKTAAFLLPIIQHI 201
Score = 94 (38.1 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ C + +A +V ARGLD + VIN+D P D ++YVH
Sbjct: 445 RSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVH 484
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 142 (55.0 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ----NIRPDRQAVLF 270
GR++D++ K KI L +V YLVLDEADRM DMGF P++ +++ + RQ +LF
Sbjct: 398 GRLMDIIGKE--KI-GLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLF 454
Query: 271 SPTFPPRVEILA 282
S TFP ++ LA
Sbjct: 455 SATFPEEIQRLA 466
Score = 121 (47.7 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 33/117 (28%), Positives = 50/117 (42%)
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
AP I T+ + L + +K + +Q + ++++G D +A +TGSGKT AF
Sbjct: 257 APPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 316
Query: 176 LLPMLRHIWEQXXXXXXXXXXXX---XXMAPTGELVRQQVRRGRMIDL-LCKNGVKI 228
LLP+L H+ +APT EL+ Q R C V I
Sbjct: 317 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 373
Score = 103 (41.3 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC-----CQSWLKSCAFRFISEEN 342
C + +A SV ARGLD + ++ VINFD P+ ++YVH C + ++ +F F +E +
Sbjct: 565 CPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISF-FDTESD 623
Query: 343 AIYATDLVKAFELSELVVRDDLKAVADSFIA 373
A LVK ++ V L+ +A S A
Sbjct: 624 NHLAQPLVKVLSDAQQDVPAWLEEIAFSSYA 654
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 145 (56.1 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D+L K KI L YL +DEADRM DMGFE + I + RQ +LFS T
Sbjct: 318 GRLMDMLDK---KILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATM 374
Query: 275 PPRVEILARKTNVCNLSIANSVRA 298
P +++ AR V ++I N RA
Sbjct: 375 PKKIQNFARSALVKPVTI-NVGRA 397
Score = 134 (52.2 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 35/111 (31%), Positives = 54/111 (48%)
Query: 80 IDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILET 135
I Y+Q K + R I MS A R +L + + + PI+++R+ IL
Sbjct: 132 IQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNG 191
Query: 136 FSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+ +NP IQ +++G D + I TGSGKTL F+LP++ EQ
Sbjct: 192 LAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQ 242
Score = 85 (35.0 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P+D E+YVH
Sbjct: 483 VATDVASKGLDFPNVQHVINYDMPDDIENYVH 514
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 144 (55.7 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL N +K LT+V+ VLDEADRM +GF ++ +++ + +Q +LFS TF
Sbjct: 144 GRLLDLLASNALK---LTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSATF 200
Query: 275 PPRVEILARK 284
P V L K
Sbjct: 201 PEEVRALTTK 210
Score = 123 (48.4 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
A + ++ + G+ + ++L + +P +QA ++SG D +A TGSGKT AF
Sbjct: 4 ASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAF 63
Query: 176 LLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
LP+L+ + E + PT EL +Q
Sbjct: 64 ALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQ 98
Score = 87 (35.7 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS 328
K ++ IA + ARG+D +L +VINFD P DY+H +S
Sbjct: 300 KNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRS 344
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 144 (55.7 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL N +K LT+V+ VLDEADRM +GF ++ +++ + +Q +LFS TF
Sbjct: 144 GRLLDLLASNALK---LTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSATF 200
Query: 275 PPRVEILARK 284
P V L K
Sbjct: 201 PEEVRALTTK 210
Score = 123 (48.4 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
A + ++ + G+ + ++L + +P +QA ++SG D +A TGSGKT AF
Sbjct: 4 ASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAF 63
Query: 176 LLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
LP+L+ + E + PT EL +Q
Sbjct: 64 ALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQ 98
Score = 87 (35.7 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS 328
K ++ IA + ARG+D +L +VINFD P DY+H +S
Sbjct: 300 KNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRS 344
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 154 (59.3 bits), Expect = 2.5e-20, Sum P(4) = 2.5e-20
Identities = 36/146 (24%), Positives = 71/146 (48%)
Query: 74 IKSKIKIDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLT 129
++ ++K + + + + + +E++ MS +R+ ++ I+ P+P++ W + G
Sbjct: 250 LEKELKKEKKVAHDDRHWRMKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFP 309
Query: 130 TKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIW----- 184
++ + ++ + P IQ A + + D + + ETGSGKT AFLLP+L +W
Sbjct: 310 DEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLL--VWITSLP 367
Query: 185 EQXXXXXXXXXXXXXXMAPTGELVRQ 210
+ MAPT EL +Q
Sbjct: 368 KMERQEHRDLGPYAIIMAPTRELAQQ 393
Score = 114 (45.2 bits), Expect = 2.5e-20, Sum P(4) = 2.5e-20
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 264
GR++D+L +N + N + TY++LDEADRM DMGFEP + ++++ + PD
Sbjct: 437 GRLLDVL-ENRYLLLN--QCTYVILDEADRMLDMGFEPDVQKVLEYM-PD 482
Score = 89 (36.4 bits), Expect = 2.5e-20, Sum P(4) = 2.5e-20
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 282 ARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
A K ++ +A V RG+D K++ LV+N+D EDY H
Sbjct: 618 ALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTH 659
Score = 43 (20.2 bits), Expect = 2.5e-20, Sum P(4) = 2.5e-20
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 265 RQAVLFSPTFPPRVEILARK 284
RQ V+F+ T +E LAR+
Sbjct: 509 RQTVMFTATMSSAIERLARQ 528
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 143 (55.4 bits), Expect = 3.6e-20, Sum P(3) = 3.6e-20
Identities = 34/70 (48%), Positives = 44/70 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL +N VK L +V LVLDEADRM DMGF I R++ + RQ +LFS TF
Sbjct: 134 GRLLDLEHQNAVK---LDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATF 190
Query: 275 PPRVEILARK 284
++ LA K
Sbjct: 191 SDDIKALAEK 200
Score = 117 (46.2 bits), Expect = 3.6e-20, Sum P(3) = 3.6e-20
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
GL+ IL ++ + P IQ A ++ G D +A +TG+GKT F LP+L+H+ +
Sbjct: 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITR 66
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 67 QPHAKGRRPVRALILTPTRELAAQ 90
Score = 93 (37.8 bits), Expect = 3.6e-20, Sum P(3) = 3.6e-20
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R LA K+ + +A + ARGLD +EL V+N++ PN EDYVH
Sbjct: 284 RTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVH 331
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 187 (70.9 bits), Expect = 3.6e-20, Sum P(3) = 3.6e-20
Identities = 40/110 (36%), Positives = 63/110 (57%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+++ ++ + AP PI+TW+++ L +ILE +L +E P IQ + + ++G D +
Sbjct: 395 FKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDIL 454
Query: 163 AITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXX--XXXMAPTGELVRQ 210
I ETGSGKT AF++PML +I +Q MAPT ELV+Q
Sbjct: 455 GIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQ 504
Score = 98 (39.6 bits), Expect = 3.6e-20, Sum P(3) = 3.6e-20
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV 258
GR+ D L K + L + Y+VLDEAD M D+GFEPQ+T ++
Sbjct: 548 GRLNDCLEK---RYLVLNQCNYIVLDEADMMIDLGFEPQVTSVL 588
Score = 74 (31.1 bits), Expect = 3.6e-20, Sum P(3) = 3.6e-20
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
IA V +RG+ + VINFD P + EDY H
Sbjct: 736 IATGVASRGIHVDGVTHVINFDIPKNIEDYTH 767
Score = 61 (26.5 bits), Expect = 7.9e-19, Sum P(3) = 7.9e-19
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 265 RQAVLFSPTFPPRVEILARK--TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYV 322
R +LFS T PP VE L++K C ++I + + +D + VI + ND ++++
Sbjct: 616 RTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKV--VDRIR-QTVIFVKSENDKKEHL 672
Score = 37 (18.1 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNL 290
L R + + EA ++ D + I +N + + L PP + I K C++
Sbjct: 637 LRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDI 696
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 142 (55.0 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ----NIRPDRQAVLF 270
GR++D++ K KI L +V YLVLDEADRM DMGF P++ +++ + RQ +LF
Sbjct: 409 GRLMDIIGKE--KI-GLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLF 465
Query: 271 SPTFPPRVEILA 282
S TFP ++ LA
Sbjct: 466 SATFPEEIQRLA 477
Score = 121 (47.7 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
Identities = 33/117 (28%), Positives = 50/117 (42%)
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
AP I T+ + L + +K + +Q + ++++G D +A +TGSGKT AF
Sbjct: 268 APPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 327
Query: 176 LLPMLRHIWEQXXXXXXXXXXXX---XXMAPTGELVRQQVRRGRMIDL-LCKNGVKI 228
LLP+L H+ +APT EL+ Q R C V I
Sbjct: 328 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 384
Score = 98 (39.6 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC-----CQSWLKSCAFRFISEEN 342
C + +A SV ARGLD + ++ VINF+ P+ ++YVH C + ++ +F F +E +
Sbjct: 576 CPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISF-FDTESD 634
Query: 343 AIYATDLVKAFELSELVVRDDLKAVADSFIA 373
A LVK ++ V L+ +A S A
Sbjct: 635 NHLAQPLVKVLSDAQQDVPAWLEEIAFSSYA 665
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 142 (55.0 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ----NIRPDRQAVLF 270
GR++D++ K KI L +V YLVLDEADRM DMGF P++ +++ + RQ +LF
Sbjct: 409 GRLMDIIGKE--KI-GLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLF 465
Query: 271 SPTFPPRVEILA 282
S TFP ++ LA
Sbjct: 466 SATFPEEIQRLA 477
Score = 121 (47.7 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
Identities = 33/117 (28%), Positives = 50/117 (42%)
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
AP I T+ + L + +K + +Q + ++++G D +A +TGSGKT AF
Sbjct: 268 APPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 327
Query: 176 LLPMLRHIWEQXXXXXXXXXXXX---XXMAPTGELVRQQVRRGRMIDL-LCKNGVKI 228
LLP+L H+ +APT EL+ Q R C V I
Sbjct: 328 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 384
Score = 98 (39.6 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC-----CQSWLKSCAFRFISEEN 342
C + +A SV ARGLD + ++ VINF+ P+ ++YVH C + ++ +F F +E +
Sbjct: 576 CPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISF-FDTESD 634
Query: 343 AIYATDLVKAFELSELVVRDDLKAVADSFIA 373
A LVK ++ V L+ +A S A
Sbjct: 635 NHLAQPLVKVLSDAQQDVPAWLEEIAFSSYA 665
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 197 (74.4 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 147 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 202
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 203 WPKEVRQLA 211
Score = 112 (44.5 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIYATD 348
IA V +RGLD ++++ VIN+D PN EDY+H +S A+ F + N +D
Sbjct: 317 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 376
Query: 349 LVKAF-ELSELVVRDDLKAVAD 369
L+ E ++ + L+ V D
Sbjct: 377 LISVLREANQAINPKLLQLVED 398
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 138 (53.6 bits), Expect = 6.0e-20, Sum P(3) = 6.0e-20
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL + VK + L +LDEADRM DMGF I +++ + DRQ +LFS TF
Sbjct: 139 GRLLDLYNQRAVKFSQLE---VFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSATF 195
Query: 275 PPRVEILAR 283
P + LA+
Sbjct: 196 SPEIRALAK 204
Score = 123 (48.4 bits), Expect = 6.0e-20, Sum P(3) = 6.0e-20
Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLP 178
P K + GL+ +L+ +E P IQA A +ISG D +A +TG+GKT F LP
Sbjct: 5 PTK-FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLP 63
Query: 179 MLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
+L+ + + PT EL Q
Sbjct: 64 LLQRLSSSKGNKVSSNNVRALILTPTRELAAQ 95
Score = 91 (37.1 bits), Expect = 6.0e-20, Sum P(3) = 6.0e-20
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R + LA K + +A + ARG+D L V+NFD PN EDYVH
Sbjct: 289 RTKALAAFKDGSVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVH 336
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 160 (61.4 bits), Expect = 6.2e-20, Sum P(3) = 6.2e-20
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 325 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 381
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 382 SATFPKEIQMLAR 394
Score = 103 (41.3 bits), Expect = 6.2e-20, Sum P(3) = 6.2e-20
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E NA D
Sbjct: 496 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITKD 555
Query: 349 LV 350
L+
Sbjct: 556 LL 557
Score = 93 (37.8 bits), Expect = 6.2e-20, Sum P(3) = 6.2e-20
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 175 CPPH-IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 233
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 234 FLLPILSQIY 243
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 147 (56.8 bits), Expect = 7.3e-20, Sum P(3) = 7.3e-20
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+R+ + + P PI++W+ + L ILE K ++ P IQ A + + D +
Sbjct: 373 FREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 163 AITETGSGKTLAFLLPMLRHIW 184
+ ETGSGKT AFL+P+L +W
Sbjct: 433 GVAETGSGKTAAFLIPLL--VW 452
Score = 123 (48.4 bits), Expect = 7.3e-20, Sum P(3) = 7.3e-20
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266
GR+ID+L +N + L+R TY+VLDEADRM DMGFEP + +I++++ Q
Sbjct: 527 GRLIDVL-ENRYLV--LSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 90 (36.7 bits), Expect = 7.3e-20, Sum P(3) = 7.3e-20
Identities = 22/88 (25%), Positives = 48/88 (54%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KS-CAFRFIS- 339
K ++ +A V RG+D +++ +V+N+D + EDY+H ++ KS A F++
Sbjct: 692 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 751
Query: 340 EENAIYATDLVKAFELSELVVRDDLKAV 367
E++A++ +EL + ++ + A+
Sbjct: 752 EDSAVF-------YELKQAILESPVSAI 772
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 159 (61.0 bits), Expect = 8.6e-20, Sum P(4) = 8.6e-20
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+R+ ++ + P+P+++W ++ LT+++L+ + ++ P IQ A L + D +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 163 AITETGSGKTLAFLLPMLRHIWE--QXXXXXXXXXXXXXXMAPTGELVRQ 210
I ETGSGKT AF+LPML +I MAPT EL +Q
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQ 404
Score = 109 (43.4 bits), Expect = 8.6e-20, Sum P(4) = 8.6e-20
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ-----NIRPDRQ 266
GR+ID L + + L + Y+VLDEADRM DMGFEPQ+ ++ N++P+ +
Sbjct: 448 GRLIDCLER---RYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENE 501
Score = 71 (30.1 bits), Expect = 8.6e-20, Sum P(4) = 8.6e-20
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
N+ +A V RG+D ++ VIN+D P E Y H
Sbjct: 628 NVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTH 662
Score = 55 (24.4 bits), Expect = 8.6e-20, Sum P(4) = 8.6e-20
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 265 RQAVLFSPTFPPRVEILARK 284
R +FS T PP VE LARK
Sbjct: 512 RTTYMFSATMPPGVERLARK 531
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 137 (53.3 bits), Expect = 8.8e-20, Sum P(3) = 8.8e-20
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL+ N +K L +V LVLDEADRM +GF ++T ++ +Q +LFS TF
Sbjct: 146 GRLLDLISSNAIK---LDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFSATF 202
Query: 275 PPRVEILARK 284
P +V L ++
Sbjct: 203 PEQVTTLTQE 212
Score = 127 (49.8 bits), Expect = 8.8e-20, Sum P(3) = 8.8e-20
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ + GL T +L ++L + P IQA A + +G D +A TGSGKT F LPML+
Sbjct: 9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 182 HIWEQXXXXXXXXXXXXXX---MAPTGELVRQ 210
+ E + PT EL +Q
Sbjct: 69 KLREDISSGSKNSKGNFVTGLVLVPTRELAKQ 100
Score = 85 (35.0 bits), Expect = 8.8e-20, Sum P(3) = 8.8e-20
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS 328
IA + ARGLD ++L +VINF+ P DY+H +S
Sbjct: 310 IATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRS 346
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 140 (54.3 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN----IRPDRQAVLF 270
GR++D++ K KI L+++ YLVLDEADRM DMGF P+I +++ + RQ ++F
Sbjct: 410 GRLLDIVSKE--KI-GLSKLRYLVLDEADRMLDMGFAPEIEKLMTKPGMPTKEKRQTLMF 466
Query: 271 SPTFPPRVEILA 282
S T+P + LA
Sbjct: 467 SATYPEEIRRLA 478
Score = 112 (44.5 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 28/100 (28%), Positives = 47/100 (47%)
Query: 114 KCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTL 173
K P I T+ + L + ++ + +Q + +I++G D +A +TGSGKT
Sbjct: 267 KDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTA 326
Query: 174 AFLLPMLRHIWEQXXXXXXXXXXX---XXXMAPTGELVRQ 210
AFLLP+L ++ + +APT EL+ Q
Sbjct: 327 AFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQ 366
Score = 105 (42.0 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC-----CQSWLKSCAFRFI 338
+T C + + +V ARGLD + ++ VIN+D P + ++YVH C + K+ +F +
Sbjct: 573 RTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNV 632
Query: 339 SEENAIYATDLVK 351
+++ I A LVK
Sbjct: 633 QDDHVI-ARPLVK 644
Score = 40 (19.1 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 323 HHCCQSWLKSCAFRFISEENAIYATD 348
H +WL+ AF N+ YA D
Sbjct: 650 HQEVPAWLEEIAFGGHGALNSFYAAD 675
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 163 (62.4 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR----PDRQAVLF 270
GR++DL+ + + + N + +LVLDEADRM DMGFEPQI IV+ +RQ ++F
Sbjct: 314 GRLVDLIDRGRISLAN---IKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMF 370
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 371 SATFPRDIQLLAR 383
Score = 100 (40.3 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 85 LRKNFYTQAREITRMSPA--YRKQLDLKIREKCAP-KPIKTWRQTGLTTKILETFSKLNH 141
L + + + T++S + K D+ + +P+ + L + +L+ +
Sbjct: 130 LERQLFGAVADGTKVSTGINFEKYDDIPVEVSGGDIEPVNEFTSPPLNSHLLQNIKLSGY 189
Query: 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
P +Q + ++ SG D +A +TGSGKT FL P+L
Sbjct: 190 TQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Score = 89 (36.4 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ +A +V +RGLD + VIN+D P D +DYVH
Sbjct: 482 SIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVH 516
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 156 (60.0 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+R+ ++ I+ P PI+ W ++ L+ +L+ K +E P IQ A + + D +
Sbjct: 680 FREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLI 739
Query: 163 AITETGSGKTLAFLLPMLRHI 183
I ETGSGKT AF+LPML ++
Sbjct: 740 GIAETGSGKTAAFVLPMLSYV 760
Score = 104 (41.7 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIY 345
++ +A V RG+D ++LVINFD P D E Y H ++ +K A FI+E ++
Sbjct: 1019 DILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHL 1078
Query: 346 ATDLVKAFELS 356
DL K F +S
Sbjct: 1079 FYDL-KQFLIS 1088
Score = 91 (37.1 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261
GR+ D L K T L + Y++LDEADRM DMGFE + I+ I
Sbjct: 833 GRLQDCLEK---AYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKI 876
Score = 51 (23.0 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 265 RQAVLFSPTFPPRVEILARK 284
R +FS T PP VE L+RK
Sbjct: 904 RLTQMFSATMPPSVERLSRK 923
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 156 (60.0 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+R+ ++ I+ P PI+ W ++ L+ +L+ K +E P IQ A + + D +
Sbjct: 680 FREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLI 739
Query: 163 AITETGSGKTLAFLLPMLRHI 183
I ETGSGKT AF+LPML ++
Sbjct: 740 GIAETGSGKTAAFVLPMLSYV 760
Score = 104 (41.7 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIY 345
++ +A V RG+D ++LVINFD P D E Y H ++ +K A FI+E ++
Sbjct: 1019 DILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHL 1078
Query: 346 ATDLVKAFELS 356
DL K F +S
Sbjct: 1079 FYDL-KQFLIS 1088
Score = 91 (37.1 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261
GR+ D L K T L + Y++LDEADRM DMGFE + I+ I
Sbjct: 833 GRLQDCLEK---AYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKI 876
Score = 51 (23.0 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 265 RQAVLFSPTFPPRVEILARK 284
R +FS T PP VE L+RK
Sbjct: 904 RLTQMFSATMPPSVERLSRK 923
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 160 (61.4 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 302 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 358
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 359 SATFPKEIQMLAR 371
Score = 98 (39.6 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 473 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 532
Query: 349 LV 350
L+
Sbjct: 533 LL 534
Score = 94 (38.1 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 151 CPPH-IESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 209
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 210 FLLPILSQIY 219
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 160 (61.4 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 303 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 359
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 360 SATFPKEIQMLAR 372
Score = 98 (39.6 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 474 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 533
Query: 349 LV 350
L+
Sbjct: 534 LL 535
Score = 94 (38.1 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 153 CPPH-IESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 211
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 212 FLLPILSQIY 221
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 138 (53.6 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 32/70 (45%), Positives = 45/70 (64%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL+ N + L+ V+++VLDEADRM DMGFE + I+ N RQ V+FS T+
Sbjct: 250 GRLRDLIESN---VLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATW 306
Query: 275 PPRVEILARK 284
P V LA++
Sbjct: 307 PLDVHKLAQE 316
Score = 108 (43.1 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 32/86 (37%), Positives = 43/86 (50%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K C L +A V ARGLD ++E+VIN+ P EDYVH ++ K A F +
Sbjct: 413 KEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTP 472
Query: 341 ENAIYATDLVKAF-ELSELVVRDDLK 365
N A +LV E ++V D LK
Sbjct: 473 LNKGLAGELVNVLREAGQVVPADLLK 498
Score = 105 (42.0 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPM 179
+KT+ ++ L +L+ E P IQ+ ++ G D + I +TGSGKTLAF +P
Sbjct: 115 LKTFAESNLPENVLDCCKTF--EKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 180 LRHI 183
+ H+
Sbjct: 173 IMHV 176
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 159 (61.0 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 38/73 (52%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RI+ Q+ P R ++F
Sbjct: 325 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHTMMF 381
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 382 SATFPKEIQMLAR 394
Score = 98 (39.6 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P D E+YVH ++ A F +E N + D
Sbjct: 496 VATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNINISKD 555
Query: 349 LV 350
L+
Sbjct: 556 LL 557
Score = 95 (38.5 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 175 CPPH-IESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 233
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 234 FLLPILSQIY 243
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 160 (61.4 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 326 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 382
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 383 SATFPKEIQMLAR 395
Score = 97 (39.2 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW------LKSCAFRFISEENAIY 345
+A +V ARGLD ++ VINFD P+D E+YVH ++ L A F +E N
Sbjct: 497 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNERNINI 556
Query: 346 ATDLV 350
DL+
Sbjct: 557 TKDLL 561
Score = 95 (38.5 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P+ I+++ + I+ + P +Q A +I D +A +TGSGKT AFL
Sbjct: 177 PRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFL 236
Query: 177 LPMLRHIW 184
LP+L I+
Sbjct: 237 LPILSQIY 244
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 160 (61.4 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 323 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 379
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 380 SATFPKEIQMLAR 392
Score = 98 (39.6 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 494 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 553
Query: 349 LV 350
L+
Sbjct: 554 LL 555
Score = 93 (37.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 173 CPPH-IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 231
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 232 FLLPILSQIY 241
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 160 (61.4 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 324 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 380
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 381 SATFPKEIQMLAR 393
Score = 98 (39.6 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 495 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 554
Query: 349 LV 350
L+
Sbjct: 555 LL 556
Score = 93 (37.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 174 CPPH-IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 232
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 233 FLLPILSQIY 242
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 160 (61.4 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 324 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 380
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 381 SATFPKEIQMLAR 393
Score = 98 (39.6 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 495 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 554
Query: 349 LV 350
L+
Sbjct: 555 LL 556
Score = 93 (37.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 174 CPPH-IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 232
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 233 FLLPILSQIY 242
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 160 (61.4 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 325 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 381
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 382 SATFPKEIQMLAR 394
Score = 98 (39.6 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 496 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 555
Query: 349 LV 350
L+
Sbjct: 556 LL 557
Score = 93 (37.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 175 CPPH-IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 233
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 234 FLLPILSQIY 243
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 160 (61.4 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 325 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 381
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 382 SATFPKEIQMLAR 394
Score = 98 (39.6 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 496 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 555
Query: 349 LV 350
L+
Sbjct: 556 LL 557
Score = 93 (37.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 175 CPPH-IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 233
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 234 FLLPILSQIY 243
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 160 (61.4 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 325 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 381
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 382 SATFPKEIQMLAR 394
Score = 98 (39.6 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 496 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 555
Query: 349 LV 350
L+
Sbjct: 556 LL 557
Score = 93 (37.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 175 CPPH-IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 233
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 234 FLLPILSQIY 243
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 160 (61.4 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 325 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 381
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 382 SATFPKEIQMLAR 394
Score = 98 (39.6 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 496 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 555
Query: 349 LV 350
L+
Sbjct: 556 LL 557
Score = 93 (37.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 175 CPPH-IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 233
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 234 FLLPILSQIY 243
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 143 (55.4 bits), Expect = 2.3e-19, Sum P(4) = 2.3e-19
Identities = 40/134 (29%), Positives = 64/134 (47%)
Query: 77 KIKIDYQQLRKNFYTQAREITRMSPAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETF 136
K KI +Q N ++A ++ A + + E P P K++++ G+ ++ E
Sbjct: 6 KRKITEKQPETNSDSEAESVSSRGSA-KDETQTSGEE---PAPAKSFKELGIIDQLCEAC 61
Query: 137 SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXX 196
+ ++ P IQ+ A L + G D + + ETGSGKT AF LPML+ + E
Sbjct: 62 ENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALME------APQTL 115
Query: 197 XXXXMAPTGELVRQ 210
+APT EL Q
Sbjct: 116 FGLVLAPTRELAYQ 129
Score = 112 (44.5 bits), Expect = 2.3e-19, Sum P(4) = 2.3e-19
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L K +L + YL +DEADR+ DM F + +I++ + R LFS T
Sbjct: 173 GRLLDHL--ENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATM 230
Query: 275 PPRVEILARKT--NVCNLSIAN 294
+VE L R + N +S+++
Sbjct: 231 STKVESLQRASLSNPVRVSVSS 252
Score = 84 (34.6 bits), Expect = 2.3e-19, Sum P(4) = 2.3e-19
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ +A V ARGLD +++V NFD P D + Y+H
Sbjct: 337 DILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIH 371
Score = 42 (19.8 bits), Expect = 2.3e-19, Sum P(4) = 2.3e-19
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 408 AQAKEYGFGEDKSDSEDVDEG 428
A+ K++G G+ D D +EG
Sbjct: 445 ARGKKFGKGKRSRDDMDQEEG 465
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 160 (61.4 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 320 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 376
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 377 SATFPKEIQMLAR 389
Score = 98 (39.6 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD + VINFD P+D E+YVH ++ A F +E+N D
Sbjct: 491 VATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKD 550
Query: 349 LV 350
L+
Sbjct: 551 LL 552
Score = 92 (37.4 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+ + + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 170 CPPH-IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAA 228
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 229 FLLPILSQIY 238
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 160 (61.4 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 323 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 379
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 380 SATFPKEIQMLAR 392
Score = 98 (39.6 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD + VINFD P+D E+YVH ++ A F +E+N D
Sbjct: 494 VATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKD 553
Query: 349 LV 350
L+
Sbjct: 554 LL 555
Score = 92 (37.4 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+ + + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 173 CPPH-IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAA 231
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 232 FLLPILSQIY 241
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 160 (61.4 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 367 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 423
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 424 SATFPKEIQMLAR 436
Score = 98 (39.6 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 540 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 599
Query: 349 LV 350
L+
Sbjct: 600 LL 601
Score = 93 (37.8 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+++ + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 217 CPPH-IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 275
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 276 FLLPILSQIY 285
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 204 (76.9 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 43/68 (63%), Positives = 52/68 (76%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID+L + TNL RVTYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 245 GRLIDML---EIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 301
Query: 275 PPRVEILA 282
P V+ LA
Sbjct: 302 PKEVKQLA 309
Score = 151 (58.2 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 52/177 (29%), Positives = 78/177 (44%)
Query: 87 KNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHE 142
KNFY + + S + +RK+ ++ I PKPI T+ + G +L +
Sbjct: 75 KNFYVEHESVRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFD 134
Query: 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMA 202
P IQ + +SG D V I TGSGKTL++ LP + HI Q +A
Sbjct: 135 KPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLV-LA 193
Query: 203 PTGELVRQ-QVR------RGRMIDLLCKNGV----KITNLTRVTYLVLDEADRMFDM 248
PT EL Q Q R+ + GV +I +L+R + +V+ R+ DM
Sbjct: 194 PTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDM 250
Score = 98 (39.6 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 290 LSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFISEEN 342
+ +A V ARG+D K + VIN+D P + EDYVH ++ A F +E+N
Sbjct: 413 IMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQN 468
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 160 (61.4 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 324 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 380
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 381 SATFPKEIQMLAR 393
Score = 98 (39.6 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 495 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKD 554
Query: 349 LV 350
L+
Sbjct: 555 LL 556
Score = 91 (37.1 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+ + + I+ + P +Q A +I D +A +TGSGKT A
Sbjct: 174 CPPH-IENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 232
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 233 FLLPILSQIY 242
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 189 (71.6 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 37/69 (53%), Positives = 52/69 (75%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ DL+ N + +++ +TYLVLDEADRM DMGFEPQI +++ +IRPDRQ ++ S T+
Sbjct: 415 GRLNDLIMAN---VIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATW 471
Query: 275 PPRVEILAR 283
PP V LA+
Sbjct: 472 PPGVRRLAQ 480
Score = 140 (54.3 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 42/143 (29%), Positives = 70/143 (48%)
Query: 117 PKPIKTWRQTGLT-TKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
P P+ T+ Q +LE +K+ P IQ+ A +++ G D + I +TG+GKTLAF
Sbjct: 278 PNPVWTFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAF 337
Query: 176 LLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ---QVRRG--RMIDLLCKNG----- 225
LLP + H Q +APT EL Q +V++ R + +C G
Sbjct: 338 LLPGMIHTEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRN 397
Query: 226 VKITNLTRVTYLVLDEADRMFDM 248
++I++L R +++ R+ D+
Sbjct: 398 MQISDLERGAEIIICTPGRLNDL 420
Score = 116 (45.9 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K+ V + +A V +RGLD +++ VIN+D P++ E+YVH ++ + + F +
Sbjct: 576 KSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTR 635
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIA 373
E+ A +L++ + +E V D+L +A F A
Sbjct: 636 EDWAMAKELIEILQEAEQEVPDELHNMARRFKA 668
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 156 (60.0 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+++ ++ + K P P++ W + + K++ S+L +E P ++Q + L + D V
Sbjct: 150 FKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVV 209
Query: 163 AITETGSGKTLAFLLPMLRHI 183
+ ETGSGKTLAFL+P+L +I
Sbjct: 210 GVAETGSGKTLAFLIPVLNYI 230
Score = 107 (42.7 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D + + KI +L++ LV+DEADRM DMGFE + +++ + ++Q S T
Sbjct: 306 GRLVDSIER---KIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQ---LSSTI 359
Query: 275 PPRV-EILARKTNVCNLSIANSV 296
R+ + R T + +I+ +V
Sbjct: 360 DGRIFHLEKRSTMMFTATISPTV 382
Score = 79 (32.9 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFISEENAIYATD 348
IA V ARG+D + LVIN+ +++Y+H ++ +F FIS+++ T
Sbjct: 496 IATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQDTEIFTP 555
Query: 349 LVK 351
L K
Sbjct: 556 LKK 558
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 156 (60.0 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+++ ++ + K P P++ W + + K++ S+L +E P ++Q + L + D V
Sbjct: 150 FKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVV 209
Query: 163 AITETGSGKTLAFLLPMLRHI 183
+ ETGSGKTLAFL+P+L +I
Sbjct: 210 GVAETGSGKTLAFLIPVLNYI 230
Score = 107 (42.7 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D + + KI +L++ LV+DEADRM DMGFE + +++ + ++Q S T
Sbjct: 306 GRLVDSIER---KIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQ---LSSTI 359
Query: 275 PPRV-EILARKTNVCNLSIANSV 296
R+ + R T + +I+ +V
Sbjct: 360 DGRIFHLEKRSTMMFTATISPTV 382
Score = 79 (32.9 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC---AFRFISEENAIYATD 348
IA V ARG+D + LVIN+ +++Y+H ++ +F FIS+++ T
Sbjct: 496 IATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQDTEIFTP 555
Query: 349 LVK 351
L K
Sbjct: 556 LKK 558
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 160 (61.4 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPD---RQAVLF 270
GR++D++ + G KI L YLVLDEADRM DMGFEPQI RIV Q+ P R ++F
Sbjct: 318 GRLVDMM-ERG-KI-GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 374
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 375 SATFPKEIQMLAR 387
Score = 98 (39.6 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATD 348
+A +V ARGLD ++ VINFD P+D E+YVH ++ A F +E N D
Sbjct: 489 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKD 548
Query: 349 LV 350
L+
Sbjct: 549 LL 550
Score = 84 (34.6 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
C P I+ + + I+ + P +Q A +I D +A +TGSG T A
Sbjct: 168 CPPH-IENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAA 226
Query: 175 FLLPMLRHIW 184
FLLP+L I+
Sbjct: 227 FLLPILSQIY 236
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 159 (61.0 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 35/121 (28%), Positives = 64/121 (52%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
++ ++ I+ P P++ W + GL +++L+ K+N++ P +IQ A +++ D +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 164 ITETGSGKTLAFLLPMLRHIWE--QXXXXXXXXXXXXXXMAPTGELVRQ-QVRRGRMIDL 220
I ETGSGKT AF++P++ I + +APT EL +Q QV + +
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 221 L 221
L
Sbjct: 352 L 352
Score = 104 (41.7 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267
GR++D L + ++ L++ TY+V+DEADRM DMGFE + +I+ ++ P A
Sbjct: 384 GRLLDCLER---RLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSL-PSSNA 432
Score = 79 (32.9 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 278 VEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KS-CA 334
+E L KT ++ +A + RG+D + LV+N++ EDY H ++ KS A
Sbjct: 559 IEQLRNKT--ADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTA 616
Query: 335 FRFISEENAIYATDL-VKAFELSELVVRDDLKAVADSFI 372
F+ E+ DL V ++ + D+L+ +F+
Sbjct: 617 ITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHEAAFV 655
Score = 65 (27.9 bits), Expect = 4.7e-17, Sum P(3) = 4.7e-17
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 265 RQAVLFSPTFPPRVEILARKTNV--CNLSIANSVRARGLDEKELELV 309
RQ ++FS T PPRV LA+ + L+I N +A E+ +E++
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMI 496
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 135 (52.6 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 215 GRMID-LLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID LL +G+ + +L L+LDEADR+ DMGF+ +I +IV++ +RQ +LFS T
Sbjct: 320 GRLIDHLLNAHGIGLDDLE---ILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSAT 376
Query: 274 FPPRVEILAR 283
V+ LA+
Sbjct: 377 LNDEVKTLAK 386
Score = 126 (49.4 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 106 QLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAIT 165
Q + K++ K + + T+ + L+ +L+ KL P IQA A L ++G D +A
Sbjct: 176 QSNRKLK-KIVEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASA 234
Query: 166 ETGSGKTLAFLLPMLRHI 183
TGSGKT AFLLP+L +
Sbjct: 235 STGSGKTAAFLLPVLERL 252
Score = 80 (33.2 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWL--KSCAFRFISEENA 343
N +A+ V +RGLD ++ VIN++ PN+ +Y+H ++ + KSC+F I++ +
Sbjct: 488 NYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSF--ITDNDR 545
Query: 344 IYATDLV 350
D+V
Sbjct: 546 KLLKDIV 552
Score = 45 (20.9 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 392 LNLMKRRIRRGKQL--RKAQA--KEYGFGEDKSDSEDVDEG 428
L+ +RR R+ K+ R+ Q K G G+D D+E++D G
Sbjct: 678 LSRKQRRHRQFKEEFEREQQEERKRKG-GDDGDDNEEIDSG 717
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 152 (58.6 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D + + + +L+R+ LVLDEAD+MFDMGF P I R+++++ P RQ +LFS T
Sbjct: 129 GRLLDHIAQGTI---DLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATM 185
Query: 275 PPRVEILAR 283
P + LA+
Sbjct: 186 PIDIRTLAQ 194
Score = 102 (41.0 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 123 WRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRH 182
++ G + + +E P IQA A +++G D + + +TG+GKT AF LP+L H
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL-H 61
Query: 183 IWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
+Q +APT EL Q
Sbjct: 62 RLQQGERGRVRALV----IAPTRELAEQ 85
Score = 78 (32.5 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A + ARG+D ++ VIN+D P+ E Y+H
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYIH 325
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 129 (50.5 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
KT+++ G+ ++ E KL + P IQ A ++++ D + + +TGSGKT AF LP++
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 181 RHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
+ +W +APT EL Q
Sbjct: 106 QELWNNPSPFFAVV------LAPTRELAYQ 129
Score = 124 (48.7 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L K +L + YL++DEADR+ DM F P I +I++ I +R+ +LFS T
Sbjct: 173 GRLMDHL--ENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATM 230
Query: 275 PPRVEILAR 283
+VE L R
Sbjct: 231 TSKVEKLQR 239
Score = 83 (34.3 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K+ + +A V ARGLD +++VIN+D P D + Y+H
Sbjct: 332 KSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 128 (50.1 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 33/74 (44%), Positives = 43/74 (58%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD------RQAV 268
GR++DL+ + + ++V YLVLDEADRM D GFE I I+ + PD RQ V
Sbjct: 294 GRLLDLINDGSI---DCSQVGYLVLDEADRMLDTGFEQDIRNIISHT-PDPTRNGSRQTV 349
Query: 269 LFSPTFPPRVEILA 282
FS T+P V LA
Sbjct: 350 FFSATWPESVRALA 363
Score = 109 (43.4 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLP 178
PI + + ++ K+ E N++ P IQA +++G D V I ETGSGKT+AF +P
Sbjct: 165 PILQFDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 179 MLRHI 183
L+++
Sbjct: 223 ALQYL 227
Score = 103 (41.3 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISE 340
K+ C + +A V ARGLD +++LVIN P EDYVH ++ K A F +
Sbjct: 463 KSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTP 522
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVN 376
++ +A +LV ++ + + L + K+N
Sbjct: 523 QDKSHAGELVNVLRQAKQDIPEGLFKFGTAVKPKLN 558
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 126 (49.4 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 29/113 (25%), Positives = 54/113 (47%)
Query: 72 EIIKSKIKIDYQQLRKNFYTQAREITRMSPAYRKQLDLKIREKCAPKPIKTWRQTGLTTK 131
+ ++ + K QQ ++N E + S + + + A KT+++ L
Sbjct: 74 QALQKQQKQQKQQEQENANHNQTESSLSSSSSTTSSSITTIDPDAELKFKTFKELNLVPD 133
Query: 132 ILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIW 184
+LE+ + P IQ+ A + G D + + +TGSGKT AF +P+L+ +W
Sbjct: 134 LLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW 186
Score = 112 (44.5 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L K +L + YLV+DEADR+ DM F P + +I++ I R LFS T
Sbjct: 250 GRIMDHL--EHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATM 307
Query: 275 PPRVEILAR 283
++E L R
Sbjct: 308 TNKIEKLQR 316
Score = 101 (40.6 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K+N N+ +A V ARGLD +++VIN+D P D + Y+H
Sbjct: 409 KSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIH 448
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 128 (50.1 bits), Expect = 3.7e-18, Sum P(4) = 3.7e-18
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L K NL + YLV+DEADR+ +M FE ++ +I++ I DR+ LFS T
Sbjct: 150 GRLIDHL--ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 207
Query: 275 PPRVEILAR 283
+V+ L R
Sbjct: 208 TKKVQKLQR 216
Score = 119 (46.9 bits), Expect = 3.7e-18, Sum P(4) = 3.7e-18
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
KT++ G+T + E +L P IQ A L + G D + + ETGSGKT AF LP+L
Sbjct: 23 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 82
Query: 181 RHIWE 185
+ E
Sbjct: 83 NALLE 87
Score = 87 (35.7 bits), Expect = 3.7e-18, Sum P(4) = 3.7e-18
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K ++ +A V +RGLD +++V+NFD P +DY+H
Sbjct: 309 KAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 348
Score = 37 (18.1 bits), Expect = 3.7e-18, Sum P(4) = 3.7e-18
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 403 KQLRKAQAKEYGFGEDKSDSEDVD 426
K+LR+ K+ ED D++D +
Sbjct: 413 KELREHGEKKKRSREDTGDNDDTE 436
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 152 (58.6 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 35/70 (50%), Positives = 46/70 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL+ GV NL+RV + VLDEADRM DMGF P I RI++ + RQ +LFS TF
Sbjct: 145 GRLLDLV-NQGV--LNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATF 201
Query: 275 PPRVEILARK 284
++ L K
Sbjct: 202 SKEIKELTDK 211
Score = 93 (37.8 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIW 184
GL+ ++L + + P +Q A +I+ D + +TG+GKT F LP+L+ ++
Sbjct: 16 GLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLF 73
Score = 84 (34.6 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R+ L + K + +A V ARGLD +L VINF+ P+ +DYVH
Sbjct: 295 RMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVH 342
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 152 (58.6 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 35/70 (50%), Positives = 46/70 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL+ GV NL+RV + VLDEADRM DMGF P I RI++ + RQ +LFS TF
Sbjct: 145 GRLLDLV-NQGV--LNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATF 201
Query: 275 PPRVEILARK 284
++ L K
Sbjct: 202 SKEIKELTDK 211
Score = 93 (37.8 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIW 184
GL+ ++L + + P +Q A +I+ D + +TG+GKT F LP+L+ ++
Sbjct: 16 GLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLF 73
Score = 84 (34.6 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R+ L + K + +A V ARGLD +L VINF+ P+ +DYVH
Sbjct: 295 RMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVH 342
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 128 (50.1 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L K NL + YLV+DEADR+ +M FE ++ +I++ I DR+ LFS T
Sbjct: 151 GRLIDHL--ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 208
Query: 275 PPRVEILAR 283
+V+ L R
Sbjct: 209 TKKVQKLQR 217
Score = 119 (46.9 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
KT++ G+T + E +L P IQ A L + G D + + ETGSGKT AF LP+L
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 181 RHIWE 185
+ E
Sbjct: 84 NALLE 88
Score = 87 (35.7 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K ++ +A V +RGLD +++V+NFD P +DY+H
Sbjct: 310 KAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 349
Score = 41 (19.5 bits), Expect = 4.5e-10, Sum P(3) = 4.5e-10
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
L +I E F L + + +Q SA+I+ G+DS++
Sbjct: 104 LAFQISEQFEALG--SSIGVQ---SAVIVGGIDSMS 134
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 128 (50.1 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L K NL + YLV+DEADR+ +M FE ++ +I++ I DR+ LFS T
Sbjct: 151 GRLIDHL--ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 208
Query: 275 PPRVEILAR 283
+V+ L R
Sbjct: 209 TKKVQKLQR 217
Score = 119 (46.9 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
KT++ G+T + E +L P IQ A L + G D + + ETGSGKT AF LP+L
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 181 RHIWE 185
+ E
Sbjct: 84 NALLE 88
Score = 87 (35.7 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K ++ +A V +RGLD +++V+NFD P +DY+H
Sbjct: 310 KAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 349
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 128 (50.1 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L K NL + YLV+DEADR+ +M FE ++ +I++ I DR+ LFS T
Sbjct: 151 GRLIDHL--ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 208
Query: 275 PPRVEILAR 283
+V+ L R
Sbjct: 209 TKKVQKLQR 217
Score = 119 (46.9 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
KT++ G+T + E +L P IQ A L + G D + + ETGSGKT AF LP+L
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 181 RHIWE 185
+ E
Sbjct: 84 NALLE 88
Score = 87 (35.7 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K ++ +A V +RGLD +++V+NFD P +DY+H
Sbjct: 310 KAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 349
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 128 (50.1 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L K NL + YLV+DEADR+ +M FE ++ +I++ I DR+ LFS T
Sbjct: 153 GRLIDHL--ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 210
Query: 275 PPRVEILAR 283
+V+ L R
Sbjct: 211 TKKVQKLQR 219
Score = 119 (46.9 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
KT++ G+T + E +L P IQ A L + G D + + ETGSGKT AF LP+L
Sbjct: 26 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 85
Query: 181 RHIWE 185
+ E
Sbjct: 86 NALLE 90
Score = 87 (35.7 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K ++ +A V +RGLD +++V+NFD P +DY+H
Sbjct: 312 KAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 351
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 148 (57.2 bits), Expect = 6.3e-18, Sum P(3) = 6.3e-18
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ-NIRPDRQ---AVLF 270
GR+ID++ + + + YLVLDEADRM DMGFEPQI +IV+ N P ++ +F
Sbjct: 375 GRLIDVMDQG---LIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMF 431
Query: 271 SPTFPPRVEILAR 283
S TFP +++LA+
Sbjct: 432 SATFPKEIQLLAQ 444
Score = 97 (39.2 bits), Expect = 6.3e-18, Sum P(3) = 6.3e-18
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P+PI + L I E ++ P +Q + + G D ++ +TGSGKT AFL
Sbjct: 227 PQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFL 286
Query: 177 LPMLRHI 183
+P++ I
Sbjct: 287 VPLVNAI 293
Score = 94 (38.1 bits), Expect = 6.3e-18, Sum P(3) = 6.3e-18
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+T + +A +V ARGLD ++ VIN+D P+D ++YVH
Sbjct: 539 RTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVH 578
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 128 (50.1 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L K NL + YLV+DEADR+ +M FE ++ +I++ I DR+ LFS T
Sbjct: 177 GRLIDHL--ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 234
Query: 275 PPRVEILAR 283
+V+ L R
Sbjct: 235 TKKVQKLQR 243
Score = 119 (46.9 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
KT++ G+T + E +L P IQ A L + G D + + ETGSGKT AF LP+L
Sbjct: 50 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 109
Query: 181 RHIWE 185
+ E
Sbjct: 110 NALLE 114
Score = 87 (35.7 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K ++ +A V +RGLD +++V+NFD P +DY+H
Sbjct: 336 KAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 375
Score = 41 (19.5 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
L +I E F L + + +Q SA+I+ G+DS++
Sbjct: 130 LAFQISEQFEALG--SSIGVQ---SAVIVGGIDSMS 160
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 130 (50.8 bits), Expect = 9.9e-18, Sum P(3) = 9.9e-18
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID L + + +L+RV +LVLDEAD M MGF + RI+ +Q LFS T
Sbjct: 141 GRMIDHLERATL---DLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATM 197
Query: 275 PPRVEILARK 284
PP + L+ K
Sbjct: 198 PPAIRKLSAK 207
Score = 113 (44.8 bits), Expect = 9.9e-18, Sum P(3) = 9.9e-18
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ + ++L + +E+P AIQA +++G D V + +TG+GKT AF +PML
Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73
Query: 182 HI 183
I
Sbjct: 74 KI 75
Score = 92 (37.4 bits), Expect = 9.9e-18, Sum P(3) = 9.9e-18
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 280 ILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
I A + ++ +A V ARGLD + + V+N+D P+D E YVH
Sbjct: 293 ITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVH 336
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 119 (46.9 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
L T++++T ++L ++ P IQ A I++ D +A +TG+GKT AF LP+L+ +
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADN 67
Query: 188 XXXXXXXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 68 QSDHAAKAIRALVLVPTRELALQ 90
Score = 116 (45.9 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR++D L + G NL ++ LV DEADRM DMGF +I +++ + RQ +LFS T
Sbjct: 134 GRLLDHL-RQGA--LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSAT 189
Score = 94 (38.1 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R ++L K + + +A V ARGLD EL+ VINF+ P EDY+H
Sbjct: 284 REKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIH 331
Score = 42 (19.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 225 GVKITNLTRVTYLVLDEADRMFDM--------GFEPQITRIVQNIRPDRQA 267
G+ IT ++ L+L+E + + D GFEP +++ R + +A
Sbjct: 343 GLAITLFSQEDALLLEEVETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKA 393
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 119 (46.9 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
L T++++T ++L ++ P IQ A I++ D +A +TG+GKT AF LP+L+ +
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADN 67
Query: 188 XXXXXXXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 68 QSDHAAKAIRALVLVPTRELALQ 90
Score = 116 (45.9 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR++D L + G NL ++ LV DEADRM DMGF +I +++ + RQ +LFS T
Sbjct: 134 GRLLDHL-RQGA--LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSAT 189
Score = 94 (38.1 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R ++L K + + +A V ARGLD EL+ VINF+ P EDY+H
Sbjct: 284 REKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIH 331
Score = 42 (19.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 225 GVKITNLTRVTYLVLDEADRMFDM--------GFEPQITRIVQNIRPDRQA 267
G+ IT ++ L+L+E + + D GFEP +++ R + +A
Sbjct: 343 GLAITLFSQEDALLLEEVETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKA 393
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 159 (61.0 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 31/70 (44%), Positives = 50/70 (71%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L +N + ++NL LVLDEADRM +MGF+PQ+ I++ +RQ +LFS TF
Sbjct: 129 GRIVDHLDRNRLDLSNLNM---LVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATF 185
Query: 275 PPRVEILARK 284
P +++ +A++
Sbjct: 186 PEQIQSIAKQ 195
Score = 92 (37.4 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183
L T++LE S + + IQA + I++G D + +TGSGKT AF L +L +
Sbjct: 8 LKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL 63
Score = 73 (30.8 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 277 RVEILARKTN--VCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---K 331
R E L + N C L +A V ARGLD L+ V N+ D E ++H ++ K
Sbjct: 279 RDETLLQFANKSACVL-VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSK 337
Query: 332 SCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVA 368
A+ F ++++ Y L++ + L + + L +++
Sbjct: 338 GAAYTFYNDQDG-YKIALLEEY-LDREITSESLPSLS 372
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 159 (61.0 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 31/70 (44%), Positives = 50/70 (71%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L +N + ++NL LVLDEADRM +MGF+PQ+ I++ +RQ +LFS TF
Sbjct: 129 GRIVDHLDRNRLDLSNLNM---LVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATF 185
Query: 275 PPRVEILARK 284
P +++ +A++
Sbjct: 186 PEQIQSIAKQ 195
Score = 92 (37.4 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183
L T++LE S + + IQA + I++G D + +TGSGKT AF L +L +
Sbjct: 8 LKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL 63
Score = 73 (30.8 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 277 RVEILARKTN--VCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---K 331
R E L + N C L +A V ARGLD L+ V N+ D E ++H ++ K
Sbjct: 279 RDETLLQFANKSACVL-VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSK 337
Query: 332 SCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVA 368
A+ F ++++ Y L++ + L + + L +++
Sbjct: 338 GAAYTFYNDQDG-YKIALLEEY-LDREITSESLPSLS 372
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 150 (57.9 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 318 GRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATM 374
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 375 PKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYV 411
Score = 140 (54.3 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 47/157 (29%), Positives = 67/157 (42%)
Query: 74 IKSKIK-IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGL 128
+K K I Y K + R I MS A RK+ + + + P PIK++++
Sbjct: 125 VKEMAKGITYDDPIKTSWRAPRYILAMSEARHNRVRKKYHILVEGEGIPPPIKSFKEMKF 184
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
IL K + P IQ I+SG D + I TGSGKTL F LP++ EQ
Sbjct: 185 PAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEK 244
Query: 189 XXXXXXXXXXXXM--APTGELVRQQVRRGRMIDLLCK 223
+ P+ EL RQ G +I+ C+
Sbjct: 245 RLPFSKREGPYGLIICPSRELARQT--HG-IIEYYCR 278
Score = 80 (33.2 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P + E+YVH
Sbjct: 483 VATDVASKGLDFPAIQHVINYDMPEEIENYVH 514
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 132 (51.5 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+++ L + +L+ V +LVLDEADRM DMGF I +I+Q + RQ +LFS TF
Sbjct: 133 GRLLEHLTACNL---SLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATF 189
Query: 275 PPRVEILARK 284
V+ LA +
Sbjct: 190 SSAVKKLANE 199
Score = 98 (39.6 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 27/63 (42%), Positives = 33/63 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KS-CAFRFISEENAIYATD 348
+A V ARGLD LE V+NFD P EDYVH ++ KS A F+S E D
Sbjct: 299 VATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLAD 358
Query: 349 LVK 351
+ K
Sbjct: 359 IEK 361
Score = 93 (37.8 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 26/80 (32%), Positives = 36/80 (45%)
Query: 131 KILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXX 190
+IL S ++ IQ A I G D +A +TG+GKT AF LP+L+ + E
Sbjct: 11 EILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSET 70
Query: 191 XXXXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 71 LKSNTRVLI-LTPTRELAAQ 89
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 122 (48.0 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ GL ILE + L +E P IQA +++G D + + +TGSGKT AF LP+L+
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
Query: 182 HI 183
++
Sbjct: 67 NL 68
Score = 110 (43.8 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L K G +L++++ LVLDEAD M MGF + I+ I Q LFS T
Sbjct: 134 GRLLDHL-KRGT--LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190
Query: 275 PPRVEILARK 284
P + + R+
Sbjct: 191 PEAIRRITRR 200
Score = 99 (39.9 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R + L R K ++ IA V ARGLD + + LV+N+D P D E YVH
Sbjct: 284 REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVH 331
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 131 (51.2 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D+ + ++ V+ LVLDEADRM DMGF I I++ + RQ +LFS T
Sbjct: 132 GRLLDMYTQRAIRFDE---VSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATL 188
Query: 275 PPRVEILAR 283
+V+ LA+
Sbjct: 189 SKQVKALAK 197
Score = 107 (42.7 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 125 QTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
Q GL + +++ ++L +++P IQ A I++G + +A +TG+GKT +F+LP+L
Sbjct: 5 QLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60
Score = 86 (35.3 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V +RG+D LE VIN+D P++ +DY+H
Sbjct: 298 VATGVVSRGIDIDALERVINYDLPDEADDYIH 329
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 131 (51.2 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D+ + ++ V+ LVLDEADRM DMGF I I++ + RQ +LFS T
Sbjct: 132 GRLLDMYTQRAIRFDE---VSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATL 188
Query: 275 PPRVEILAR 283
+V+ LA+
Sbjct: 189 SKQVKALAK 197
Score = 107 (42.7 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 125 QTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
Q GL + +++ ++L +++P IQ A I++G + +A +TG+GKT +F+LP+L
Sbjct: 5 QLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60
Score = 86 (35.3 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V +RG+D LE VIN+D P++ +DY+H
Sbjct: 298 VATGVVSRGIDIDALERVINYDLPDEADDYIH 329
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 124 (48.7 bits), Expect = 6.4e-17, Sum P(3) = 6.4e-17
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
++ Q GL+ +++T ++L ++ P IQ A +I+ G D +A +TG+GKT +F+LP+L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 182 HIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
+ + + PT EL Q
Sbjct: 62 KL--RQGQTQRKKRVRALILVPTRELAMQ 88
Score = 113 (44.8 bits), Expect = 6.4e-17, Sum P(3) = 6.4e-17
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL G + + +VLDEADRM DMGF I +I+ + + Q +LFS T
Sbjct: 132 GRLMDLY---GQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188
Query: 275 PPRVEILARKTNV 287
+V LA KT V
Sbjct: 189 SRKVRELA-KTAV 200
Score = 84 (34.6 bits), Expect = 6.4e-17, Sum P(3) = 6.4e-17
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC-- 333
R ++L K+ +A V ARG+D +L V+N+D P ++YVH ++
Sbjct: 282 RAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVG 341
Query: 334 -AFRFISEEN 342
A F+S++N
Sbjct: 342 EAISFVSKDN 351
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 124 (48.7 bits), Expect = 6.4e-17, Sum P(3) = 6.4e-17
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
++ Q GL+ +++T ++L ++ P IQ A +I+ G D +A +TG+GKT +F+LP+L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 182 HIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
+ + + PT EL Q
Sbjct: 62 KL--RQGQTQRKKRVRALILVPTRELAMQ 88
Score = 113 (44.8 bits), Expect = 6.4e-17, Sum P(3) = 6.4e-17
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL G + + +VLDEADRM DMGF I +I+ + + Q +LFS T
Sbjct: 132 GRLMDLY---GQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188
Query: 275 PPRVEILARKTNV 287
+V LA KT V
Sbjct: 189 SRKVRELA-KTAV 200
Score = 84 (34.6 bits), Expect = 6.4e-17, Sum P(3) = 6.4e-17
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC-- 333
R ++L K+ +A V ARG+D +L V+N+D P ++YVH ++
Sbjct: 282 RAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVG 341
Query: 334 -AFRFISEEN 342
A F+S++N
Sbjct: 342 EAISFVSKDN 351
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 149 (57.5 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 321 GRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATM 377
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 378 PKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV 414
Score = 137 (53.3 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 44/144 (30%), Positives = 61/144 (42%)
Query: 74 IKSKIK-IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGL 128
+K K I Y K +T R + MS RK+ + + P PIK++++ L
Sbjct: 128 VKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKL 187
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
IL K +P IQ I+SG D + I TGSGKTL F LP++ EQ
Sbjct: 188 PAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEK 247
Query: 189 XXXXXXXXXXXXM--APTGELVRQ 210
+ P+ EL RQ
Sbjct: 248 RLPFSKREGPYGLIICPSRELARQ 271
Score = 80 (33.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P + E+YVH
Sbjct: 486 VATDVASKGLDFPAIQHVINYDMPEEIENYVH 517
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 149 (57.5 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 322 GRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATM 378
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 379 PKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV 415
Score = 137 (53.3 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 44/144 (30%), Positives = 61/144 (42%)
Query: 74 IKSKIK-IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGL 128
+K K I Y K +T R + MS RK+ + + P PIK++++ L
Sbjct: 129 VKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKL 188
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
IL K +P IQ I+SG D + I TGSGKTL F LP++ EQ
Sbjct: 189 PAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEK 248
Query: 189 XXXXXXXXXXXXM--APTGELVRQ 210
+ P+ EL RQ
Sbjct: 249 RLPFSKREGPYGLIICPSRELARQ 272
Score = 80 (33.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P + E+YVH
Sbjct: 487 VATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 120 (47.3 bits), Expect = 8.9e-17, Sum P(3) = 8.9e-17
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPM 179
+KT+ + G+ ++++ +L +NP IQA A + G D + + +TGSGKT AF +P+
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 180 LRHIWE 185
L+ + E
Sbjct: 68 LQALLE 73
Score = 104 (41.7 bits), Expect = 8.9e-17, Sum P(3) = 8.9e-17
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ D + + K +L + YLVLDEADR+ + FE + +I++ I +R+ LFS T
Sbjct: 148 GRLWDHM--SDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATM 205
Query: 275 PPRVEILAR 283
+V L R
Sbjct: 206 TKKVRKLQR 214
Score = 99 (39.9 bits), Expect = 8.9e-17, Sum P(3) = 8.9e-17
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K CN+ + V +RGLD +++VIN+D P + +DY+H
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIH 346
Score = 39 (18.8 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 282 ARKTNVCNLSIANSVRARGLDEKELE 307
A+K + N+ + + RG D++E E
Sbjct: 403 AKKLSAMNMKESGGRKRRGEDDEESE 428
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 149 (57.5 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 322 GRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATM 378
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 379 PKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV 415
Score = 136 (52.9 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 43/144 (29%), Positives = 60/144 (41%)
Query: 74 IKSKIK-IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGL 128
+K K I Y K +T R + MS RK+ + + P PIK++++
Sbjct: 129 VKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKF 188
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
IL K +P IQ I+SG D + I TGSGKTL F LP++ EQ
Sbjct: 189 PAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEK 248
Query: 189 XXXXXXXXXXXXM--APTGELVRQ 210
+ P+ EL RQ
Sbjct: 249 RLPFSKREGPYGLIICPSRELARQ 272
Score = 80 (33.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P + E+YVH
Sbjct: 487 VATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 149 (57.5 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 322 GRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATM 378
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 379 PKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV 415
Score = 136 (52.9 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 43/144 (29%), Positives = 60/144 (41%)
Query: 74 IKSKIK-IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGL 128
+K K I Y K +T R + MS RK+ + + P PIK++++
Sbjct: 129 VKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKF 188
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
IL K +P IQ I+SG D + I TGSGKTL F LP++ EQ
Sbjct: 189 PAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEK 248
Query: 189 XXXXXXXXXXXXM--APTGELVRQ 210
+ P+ EL RQ
Sbjct: 249 RLPFSKREGPYGLIICPSRELARQ 272
Score = 80 (33.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P + E+YVH
Sbjct: 487 VATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 149 (57.5 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 322 GRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATM 378
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 379 PKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV 415
Score = 136 (52.9 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 43/144 (29%), Positives = 60/144 (41%)
Query: 74 IKSKIK-IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGL 128
+K K I Y K +T R + MS RK+ + + P PIK++++
Sbjct: 129 VKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKF 188
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
IL K +P IQ I+SG D + I TGSGKTL F LP++ EQ
Sbjct: 189 PAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEK 248
Query: 189 XXXXXXXXXXXXM--APTGELVRQ 210
+ P+ EL RQ
Sbjct: 249 RLPFSKREGPYGLIICPSRELARQ 272
Score = 80 (33.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P + E+YVH
Sbjct: 487 VATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 115 (45.5 bits), Expect = 9.5e-17, Sum P(4) = 9.5e-17
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN 260
GR+ D+L K +K+ LT T+LVLDEADRM DMGF PQI IV +
Sbjct: 510 GRLNDILEKGKIKLF-LT--TFLVLDEADRMLDMGFSPQIRSIVND 552
Score = 111 (44.1 bits), Expect = 9.5e-17, Sum P(4) = 9.5e-17
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
K + N+ +A V ARGLD ++ VINFD P++ +DY+H ++ A F++E
Sbjct: 692 KRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNE 751
Query: 341 ENAIYATDLVKAFE 354
+N DL+ E
Sbjct: 752 DNKNIFKDLLATLE 765
Score = 98 (39.6 bits), Expect = 9.5e-17, Sum P(4) = 9.5e-17
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183
L +L K+N++ IQ + +I++ D + + +TGSGKT +LLP++ H+
Sbjct: 369 LNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHM 424
Score = 51 (23.0 bits), Expect = 9.5e-17, Sum P(4) = 9.5e-17
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 265 RQAVLFSPTFPPRVEILARK 284
RQ ++FS TF +++LA++
Sbjct: 581 RQTIMFSATFRKEIQVLAKE 600
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 115 (45.5 bits), Expect = 9.5e-17, Sum P(4) = 9.5e-17
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN 260
GR+ D+L K +K+ LT T+LVLDEADRM DMGF PQI IV +
Sbjct: 510 GRLNDILEKGKIKLF-LT--TFLVLDEADRMLDMGFSPQIRSIVND 552
Score = 111 (44.1 bits), Expect = 9.5e-17, Sum P(4) = 9.5e-17
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISE 340
K + N+ +A V ARGLD ++ VINFD P++ +DY+H ++ A F++E
Sbjct: 692 KRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNE 751
Query: 341 ENAIYATDLVKAFE 354
+N DL+ E
Sbjct: 752 DNKNIFKDLLATLE 765
Score = 98 (39.6 bits), Expect = 9.5e-17, Sum P(4) = 9.5e-17
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183
L +L K+N++ IQ + +I++ D + + +TGSGKT +LLP++ H+
Sbjct: 369 LNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHM 424
Score = 51 (23.0 bits), Expect = 9.5e-17, Sum P(4) = 9.5e-17
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 265 RQAVLFSPTFPPRVEILARK 284
RQ ++FS TF +++LA++
Sbjct: 581 RQTIMFSATFRKEIQVLAKE 600
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 149 (57.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 340 GRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATM 396
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 397 PKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV 433
Score = 136 (52.9 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 43/144 (29%), Positives = 60/144 (41%)
Query: 74 IKSKIK-IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGL 128
+K K I Y K +T R + MS RK+ + + P PIK++++
Sbjct: 147 VKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKF 206
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
IL K +P IQ I+SG D + I TGSGKTL F LP++ EQ
Sbjct: 207 PAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEK 266
Query: 189 XXXXXXXXXXXXM--APTGELVRQ 210
+ P+ EL RQ
Sbjct: 267 RLPFSKREGPYGLIICPSRELARQ 290
Score = 80 (33.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P + E+YVH
Sbjct: 505 VATDVASKGLDFPAIQHVINYDMPEEIENYVH 536
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 149 (57.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 349 GRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATM 405
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 406 PKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV 442
Score = 136 (52.9 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 43/144 (29%), Positives = 60/144 (41%)
Query: 74 IKSKIK-IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGL 128
+K K I Y K +T R + MS RK+ + + P PIK++++
Sbjct: 156 VKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKF 215
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
IL K +P IQ I+SG D + I TGSGKTL F LP++ EQ
Sbjct: 216 PAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEK 275
Query: 189 XXXXXXXXXXXXM--APTGELVRQ 210
+ P+ EL RQ
Sbjct: 276 RLPFSKREGPYGLIICPSRELARQ 299
Score = 80 (33.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P + E+YVH
Sbjct: 514 VATDVASKGLDFPAIQHVINYDMPEEIENYVH 545
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 151 (58.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 173 GRLMDLLNK---KMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQRQTLLFSATM 229
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 230 PKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYV 266
Score = 129 (50.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
RK+ + + + P PIK++R+ IL+ K +P IQ I+SG D +
Sbjct: 20 RKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIG 79
Query: 164 ITETGSGKTLAFLLPMLRHIWEQ 186
I TGSGKTL F LP++ EQ
Sbjct: 80 IAFTGSGKTLVFTLPIIMFCLEQ 102
Score = 80 (33.2 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 280 ILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
I A K ++ +A V ++GLD ++ V+N+D P + E+YVH
Sbjct: 326 IEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVH 369
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 175 (66.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ-----NIRPDRQAVL 269
GR++DL+ + + + N + YL+LDEADRM DMGFEPQI RIV+ N+ DRQ ++
Sbjct: 330 GRLVDLIERGRISLVN---IKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVN-DRQTLM 385
Query: 270 FSPTFPPRVEILAR 283
FS TFP +++LAR
Sbjct: 386 FSATFPRDIQMLAR 399
Score = 107 (42.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P+P+ T+ L ++ + ++ P +Q + ++++G D +A +TGSGKT FL
Sbjct: 182 PEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFL 241
Query: 177 LPMLRHIWE 185
P+L ++
Sbjct: 242 FPILSQAYQ 250
Score = 103 (41.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 45/167 (26%), Positives = 72/167 (43%)
Query: 206 ELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR 265
E V +R ++D+L +G T LT L+ E RM D ++ + N R
Sbjct: 425 EYVEDHDKRSVLLDILHTHGT--TGLT----LIFVETKRMADA-----LSEFLINQRFPA 473
Query: 266 QAVLFSPTFPPRVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHH 324
A+ T R L ++ + +A +V ARGLD + VIN+D P D +DYVH
Sbjct: 474 TAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHR 533
Query: 325 CCQSWLKS---CAFRFISEENAIYATDLVKAFELSELVVRDDLKAVA 368
++ A F + N DL+ + + V L+++A
Sbjct: 534 IGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESIA 580
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 122 (48.0 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L K NL + +LV+DEADR+ +M FE ++ +I++ I DR+ LFS T
Sbjct: 152 GRLVDHL--ENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 209
Query: 275 PPRVEILAR 283
+V+ L R
Sbjct: 210 TKQVQKLQR 218
Score = 110 (43.8 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 105 KQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAI 164
K L+ E + ++++ G+T + E +L + P IQ A + + G D + +
Sbjct: 9 KAAGLEAEEVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGL 68
Query: 165 TETGSGKTLAFLLPMLR 181
ETGSGKT AF LP+L+
Sbjct: 69 AETGSGKTGAFALPILQ 85
Score = 88 (36.0 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K ++ +A V +RGLD +++VINFD P +DY+H
Sbjct: 311 KAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIH 350
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 149 (57.5 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 40/97 (41%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K K+ +L YL LDEADRM DMGFE I I + RQ +LFS T
Sbjct: 322 GRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATM 378
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++ A+ V ++I A LD +E+E V
Sbjct: 379 PKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV 415
Score = 133 (51.9 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 43/144 (29%), Positives = 60/144 (41%)
Query: 74 IKSKIK-IDYQQLRKNFYTQAREITRMSPA----YRKQLDLKIREKCAPKPIKTWRQTGL 128
+K K I Y K +T R + MS RK+ + + P PIK++++
Sbjct: 129 VKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKF 188
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXX 188
IL K +P IQ I+SG D + I TGSGKTL F LP++ EQ
Sbjct: 189 PAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEK 248
Query: 189 XXXXXXXXXXXXM--APTGELVRQ 210
+ P+ EL RQ
Sbjct: 249 RLPFSKREGPYGLIICPSRELARQ 272
Score = 80 (33.2 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD ++ VIN+D P + E+YVH
Sbjct: 487 VATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 147 (56.8 bits), Expect = 2.2e-16, Sum P(4) = 2.2e-16
Identities = 34/69 (49%), Positives = 45/69 (65%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL C+ G L ++ LVLDEAD M D+GF P I RI++ I DRQ++LFS T
Sbjct: 157 GRLLDL-CQQGH--LQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPADRQSMLFSATM 213
Query: 275 PPRVEILAR 283
P + LAR
Sbjct: 214 PDPIITLAR 222
Score = 93 (37.8 bits), Expect = 2.2e-16, Sum P(4) = 2.2e-16
Identities = 25/89 (28%), Positives = 38/89 (42%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ + G+ +I+ + + P AIQ L + G D + TG GKT AF +P+L+
Sbjct: 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70
Query: 182 HIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
I + PT EL Q
Sbjct: 71 RITSGDGTRPLTGAPRALVVVPTRELCLQ 99
Score = 77 (32.2 bits), Expect = 2.2e-16, Sum P(4) = 2.2e-16
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 282 ARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
A +T ++ +A V ARG+D ++ VIN+ P D + YVH
Sbjct: 315 AFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVH 356
Score = 37 (18.1 bits), Expect = 2.2e-16, Sum P(4) = 2.2e-16
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 412 EYGFGEDKSDSEDVDEGTRKSGGDISHQ 439
E G G DV G+R G+ + +
Sbjct: 480 EPGSGTASDSGSDVVSGSRSGNGEAARR 507
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 126 (49.4 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + K NL + YLV+DEADR+ +M FE ++ +I++ I DR+ LFS T
Sbjct: 206 GRLIDHM--ENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLFSATM 263
Query: 275 PPRVEILAR 283
+V+ L R
Sbjct: 264 TKKVQKLQR 272
Score = 108 (43.1 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 111 IREKCAPKPIKT-WRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGS 169
I E I T +++ G+T + E +L + P IQ A + + G D + + ETGS
Sbjct: 68 IEETVTTGEIHTSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGS 127
Query: 170 GKTLAFLLPMLRHI 183
GKT AF +P+L+ +
Sbjct: 128 GKTGAFAVPVLQSL 141
Score = 84 (34.6 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K+ ++ +A V +RGLD ++ VINFD P +DY+H
Sbjct: 365 KSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIH 404
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 150 (57.9 bits), Expect = 6.1e-16, Sum P(3) = 6.1e-16
Identities = 36/131 (27%), Positives = 65/131 (49%)
Query: 103 YRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
+++ ++ + P P+++W ++GL ++LE ++ ++ P IQ A + + D +
Sbjct: 328 FKEDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLI 387
Query: 163 AITETGSGKTLAFLLPMLRHIWE----QXXXXXXXXXXXXXXMAPTGELVRQ-QVRRGRM 217
+ TGSGKT AFLLP+L +I E +APT EL +Q ++ +
Sbjct: 388 GVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKF 447
Query: 218 IDLLCKNGVKI 228
+ L N V I
Sbjct: 448 TEPLGFNVVSI 458
Score = 92 (37.4 bits), Expect = 6.1e-16, Sum P(3) = 6.1e-16
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRI-----VQNIRPDRQ 266
GR++D + + ++ L++ Y+++DEADRM D+GFE + +I V N +PD +
Sbjct: 483 GRLVDCIER---RMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTE 536
Score = 79 (32.9 bits), Expect = 6.1e-16, Sum P(3) = 6.1e-16
Identities = 27/103 (26%), Positives = 50/103 (48%)
Query: 271 SPTFPPRVEILARKTN-VCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW 329
S T R LA N ++ +A + RG+D ++ LVINF+ E Y H ++
Sbjct: 654 SKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTG 713
Query: 330 L--KS-CAFRFISEENAIYATDLVKAFELSELVVRDDLKAVAD 369
KS A F+ E+A D++ ++L +++++ + V +
Sbjct: 714 RAGKSGVAITFLGNEDA----DVM--YDLKQMLIKSPISRVPE 750
Score = 51 (23.0 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 265 RQAVLFSPTFPPRVEILARK--TNVCNLSIANSVRARGLDEKELELVINFD 313
RQ ++++ T P VE +ARK ++I ++ A E+ +E++ D
Sbjct: 555 RQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGED 605
Score = 45 (20.9 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 234 VTYLVLDEADRMFD---MGFEPQITRIVQNIRPDRQAVLFSPT 273
+T+L ++AD M+D M + I+R+ + +R +A PT
Sbjct: 722 ITFLGNEDADVMYDLKQMLIKSPISRVPEELRK-HEAAQSKPT 763
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 150 (57.9 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 37/97 (38%), Positives = 54/97 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ D+L K K +L YL LDEADR+ D+GFE I + + + RQ +LFS T
Sbjct: 287 GRLKDMLAK---KKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATM 343
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++I AR V +++ A LD +E+E V
Sbjct: 344 PTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYV 380
Score = 126 (49.4 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
RKQ + + P PIK ++ +L+T + P IQ +I++G D +
Sbjct: 129 RKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Query: 164 ITETGSGKTLAFLLPML 180
I TGSGKTL F+LPM+
Sbjct: 189 IAFTGSGKTLVFVLPMI 205
Score = 81 (33.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD +++ VIN+D P + E+YVH
Sbjct: 452 VATDVASKGLDFPDIQHVINYDMPAEIENYVH 483
Score = 37 (18.1 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 345 YATDLVKAFELSELVVRDDLKAVADSF 371
Y T L +A L +L DD++ V D F
Sbjct: 305 YLT-LDEADRLVDLGFEDDIREVFDHF 330
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 133 (51.9 bits), Expect = 6.9e-16, Sum P(3) = 6.9e-16
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D++ ++ V + N+ V V+DEAD M MGF+ Q+ +++N+ D Q +L S T
Sbjct: 319 GRLLDIMKQSSVDLGNIKIV---VVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATI 375
Query: 275 PPRVEILARK 284
P R+E LA +
Sbjct: 376 PTRIEQLASR 385
Score = 104 (41.7 bits), Expect = 6.9e-16, Sum P(3) = 6.9e-16
Identities = 32/113 (28%), Positives = 48/113 (42%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
R QL + + + P+PI + G + +E P IQ + + G D +A
Sbjct: 174 RGQLGIVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPTPIQMQMIPVGLLGRDLLA 233
Query: 164 ITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVRRGR 216
+TGSGKT AFLLP++ Q + PT EL Q R+ +
Sbjct: 234 SADTGSGKTAAFLLPVITRALVQSKAPSALV------LTPTRELAIQIERQAK 280
Score = 81 (33.6 bits), Expect = 6.9e-16, Sum P(3) = 6.9e-16
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ V RGLD ++LV+NFD P+ ++YVH
Sbjct: 488 VSTGVLGRGLDLISVKLVVNFDMPSSMDEYVH 519
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 214 (80.4 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 40/87 (45%), Positives = 63/87 (72%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR ID+L N K+ + R+T++V+DEADR+FD+GFEPQIT+I++ +RPD+Q VLFS TF
Sbjct: 390 GRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATF 449
Query: 275 PPRVEILARKTNVCNLSIANSVRARGL 301
P ++ A V + I+ ++ ++G+
Sbjct: 450 PNKLRSFA--VRVLHSPISITINSKGM 474
Score = 210 (79.0 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 74/262 (28%), Positives = 118/262 (45%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCFRLGRRLPAEDSH---SASDYELFMXXXXXXXXXXXX 71
E DPLD FM ++ + + G L ED +D E
Sbjct: 134 EKDPLDEFMTSLKEEKMSNSKGMYDRGDILDVEDQLFELGGTDDEDVEDNTDNSNIAKIA 193
Query: 72 EI-IKSKIKIDY------QQLRKNFYTQAREITRMSPA----YRKQLD-LKIREKCAPKP 119
++ K ++K Y + +KNFY ++ ++ MS R LD +KI+ PKP
Sbjct: 194 KLKAKKRVKQIYYSPEELEPFQKNFYIESETVSSMSEMEVEELRLSLDNIKIKGTGCPKP 253
Query: 120 IKTWRQTGLTTKILETFS-KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLP 178
+ W Q GL+T + + KL+ + IQ+ A I+SG D + I++TGSGKT+++LLP
Sbjct: 254 VTKWSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLP 313
Query: 179 MLRHIWEQXXXXXXXXXXXXXXMAPTGEL---VRQQVRRGRMID-----LLCKNGVK--- 227
+LR + Q +APT EL + ++V + D + C G +
Sbjct: 314 LLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKK 373
Query: 228 -ITNLTRVTYLVLDEADRMFDM 248
IT+L R T +V+ R D+
Sbjct: 374 QITDLKRGTEIVVATPGRFIDI 395
Score = 65 (27.9 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 24/92 (26%), Positives = 40/92 (43%)
Query: 278 VEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH---HCCQSWLKSCA 334
+E R+ N ++ + V +RGL+ E+ LVI ++A + YVH + A
Sbjct: 568 LEKFKREKN--SILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTA 625
Query: 335 FRFISEENAIYATDLVKAFELSELVVRDDLKA 366
+ + A L KA E+ D L+A
Sbjct: 626 ITLLLHDELSGAYILSKAMRDEEIKALDPLQA 657
Score = 42 (19.8 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 9/40 (22%), Positives = 24/40 (60%)
Query: 75 KSKIKIDYQQLRKNFYTQAREITRMSPAYRKQLDLKIREK 114
+ ++K + ++ RKN + ++ E + P+ +K K+++K
Sbjct: 64 QERVKEELRK-RKNEFRKSDEPVSVKPSKKKSKRSKVKKK 102
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 122 (48.0 bits), Expect = 8.3e-16, Sum P(3) = 8.3e-16
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL + + +L+R+ LVLDEADRM DMGF + RI RQ +LF+ T
Sbjct: 132 GRLVDLLDRRSL---DLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTATM 188
Query: 275 PPRVEILA 282
+ LA
Sbjct: 189 DSAMARLA 196
Score = 97 (39.2 bits), Expect = 8.3e-16, Sum P(3) = 8.3e-16
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ + L IL+ + + P +QA A + +D +A +TG+GKT AF+LP L+
Sbjct: 2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61
Query: 182 HI 183
+
Sbjct: 62 RL 63
Score = 94 (38.1 bits), Expect = 8.3e-16, Sum P(3) = 8.3e-16
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 280 ILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
I A K L +A V ARGLD + VINFD P EDYVH
Sbjct: 287 IAAMKQGRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVH 330
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 159 (61.0 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ D+L K KI NL YLVLDEADRM DMGFE +I I + RQ +LFS T
Sbjct: 331 GRLSDMLTK---KIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATM 387
Query: 275 PPRVEILAR----KTNVCNLSIANSVRARGLDEKE 305
P +++ A+ K V N+ A + L E E
Sbjct: 388 PRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELE 422
Score = 116 (45.9 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 33/110 (30%), Positives = 48/110 (43%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNH-ENPVAIQAPASALIISGLDSV 162
RK+L + P PI ++ + +LE K P AIQ + +SG D +
Sbjct: 172 RKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMI 231
Query: 163 AITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXM--APTGELVRQ 210
I TGSGKT+ F+LP++ EQ + P+ EL RQ
Sbjct: 232 GIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQ 281
Score = 98 (39.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 280 ILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFR 336
I A + N ++ +A V ++GLD + +E VINFD P D E+YVH + S K A
Sbjct: 484 IEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATT 543
Query: 337 FISEEN 342
FI++++
Sbjct: 544 FINKKS 549
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 131 (51.2 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+++ L V +L++V +LVLDEADRM DMGF I +++ ++ Q ++FS TF
Sbjct: 150 GRLLEHLALRNV---DLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATF 206
Query: 275 PPRVEILARK 284
RV+ LA +
Sbjct: 207 SDRVKSLANQ 216
Score = 96 (38.9 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
GL+ +L+ ++N IQ A +I G+D +A +TG+GKT AF LP+L
Sbjct: 7 GLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60
Score = 80 (33.2 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ARGLD +L V+NF P EDYVH
Sbjct: 316 VATDVAARGLDIPDLAFVVNFHLPFLPEDYVH 347
Score = 39 (18.8 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 396 KRRIRRGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGGDISHQD 440
+R + G + + +A EY K DS++ ++ +++ +D
Sbjct: 385 ERIVAPGYEFNRLEASEYQEATVKRDSKNRYRAAQEKNQNLAKKD 429
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 130 (50.8 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 35/75 (46%), Positives = 48/75 (64%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIV--QNI-RPD-RQAVL 269
GR + C++G L + YLVLDEADRM D MGF P+I +I+ +N+ + D RQ ++
Sbjct: 434 GR-VKHFCEDGA--IKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMM 490
Query: 270 FSPTFPPRVEILARK 284
FS TFP V+ ARK
Sbjct: 491 FSATFPSSVQEAARK 505
Score = 97 (39.2 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 29/102 (28%), Positives = 44/102 (43%)
Query: 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177
+P K++ + + + + + IQ L+ G D +A +TGSGKT AFLL
Sbjct: 295 QPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLL 354
Query: 178 PML-RHIWEQXXXXXXXXXXXXX--XMAPTGELVRQQVRRGR 216
P++ R I E+ + PT EL Q GR
Sbjct: 355 PIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGR 396
Score = 92 (37.4 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSCAFR---FIS-EENAIYAT 347
IA +V RGLD K ++ VIN+D PN+ +DY+H ++ + R FIS ++
Sbjct: 618 IATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILP 677
Query: 348 DLVKAFELSELVVRDDLKAVA 368
LV+ +E VV +K A
Sbjct: 678 QLVRTLADAEQVVPSWMKEAA 698
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 130 (50.8 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 35/75 (46%), Positives = 48/75 (64%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIV--QNI-RPD-RQAVL 269
GR + C++G L + YLVLDEADRM D MGF P+I +I+ +N+ + D RQ ++
Sbjct: 434 GR-VKHFCEDGA--IKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMM 490
Query: 270 FSPTFPPRVEILARK 284
FS TFP V+ ARK
Sbjct: 491 FSATFPSSVQEAARK 505
Score = 97 (39.2 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 29/102 (28%), Positives = 44/102 (43%)
Query: 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177
+P K++ + + + + + IQ L+ G D +A +TGSGKT AFLL
Sbjct: 295 QPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLL 354
Query: 178 PML-RHIWEQXXXXXXXXXXXXX--XMAPTGELVRQQVRRGR 216
P++ R I E+ + PT EL Q GR
Sbjct: 355 PIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGR 396
Score = 92 (37.4 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSCAFR---FIS-EENAIYAT 347
IA +V RGLD K ++ VIN+D PN+ +DY+H ++ + R FIS ++
Sbjct: 618 IATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILP 677
Query: 348 DLVKAFELSELVVRDDLKAVA 368
LV+ +E VV +K A
Sbjct: 678 QLVRTLADAEQVVPSWMKEAA 698
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 161 (61.7 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 36/72 (50%), Positives = 50/72 (69%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ--NIRP--DRQAVLF 270
GR+ D++ + V + N + +LVLDEADRM DMGFEPQI RIV+ N+ P RQ ++F
Sbjct: 437 GRLEDMITRGKVGLEN---IRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 493
Query: 271 SPTFPPRVEILA 282
S TFP +++ LA
Sbjct: 494 SATFPKQIQELA 505
Score = 115 (45.5 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P I ++ LT I + ++ P +Q A +II+G D +A +TGSGKT AFL
Sbjct: 291 PPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFL 350
Query: 177 LPMLRHIWE 185
+P+L ++E
Sbjct: 351 VPILNQMYE 359
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 128 (50.1 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D + K+ + V L++DEADRM DMGF P I +I + +RQ +LFS TF
Sbjct: 134 GRLMDQFDRG--KLL-MMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFSATF 190
Query: 275 PPRVEILAR 283
P ++ LA+
Sbjct: 191 PTDIQRLAK 199
Score = 104 (41.7 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ GL IL+ ++ + P IQ A I+ G D + +TG+GKT AF+LPM++
Sbjct: 5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64
Query: 182 HI 183
+
Sbjct: 65 RL 66
Score = 81 (33.6 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R E L R + L +A+ V ARGLD ++ V NF P EDYVH
Sbjct: 287 RSETLQRFRDGKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVH 334
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 117 (46.2 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 33/111 (29%), Positives = 50/111 (45%)
Query: 106 QLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAIT 165
QL + I+ + P+PI + G + +E P IQ + + G D VA
Sbjct: 194 QLGIAIQGQQVPRPIIEFEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASA 253
Query: 166 ETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVRRGR 216
+TGSGKT AFLLP++ + + +APT EL Q R+ +
Sbjct: 254 DTGSGKTAAFLLPVIMKVLNETETPSALI------LAPTRELAIQIERQAK 298
Score = 115 (45.5 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++++L ++ V++ + V V+DE D M MGF+ Q+ I+++I D Q +L S T
Sbjct: 337 GRLLEILRQSSVQLHGIKIV---VVDEVDTMLKMGFQQQVLDILEDISHDHQTILVSATI 393
Query: 275 PPRVEILARK 284
P +E LA +
Sbjct: 394 PVGIEHLANQ 403
Score = 84 (34.6 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
++ V RGLD ++LV+NFD P+ ++YVH ++ A FI+ + D
Sbjct: 506 VSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWD 565
Query: 349 LVK 351
+VK
Sbjct: 566 VVK 568
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 129 (50.5 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+IDL+ K G NL+ V ++VLDEAD+M +GF + I++ + RQ+++FS T
Sbjct: 235 GRVIDLM-KRGA--LNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATM 291
Query: 275 PPRVEILARK 284
P + L +K
Sbjct: 292 PSWIRSLTKK 301
Score = 97 (39.2 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 29/105 (27%), Positives = 46/105 (43%)
Query: 125 QTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIW 184
+ G++ +I++ S E IQ + G D + TG+GKTLAF +P++ I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 185 EQXXXXXXXXXXXXXXMAPTGELVRQQVRRGR----MIDLLCKNG 225
+ +APT EL RQ + R +D +C G
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYG 212
Score = 88 (36.0 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
N+ +A V ARGLD ++L+I+++ PN+ E +VH
Sbjct: 400 NILVATDVAARGLDVPNVDLIIHYELPNNTETFVH 434
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 120 (47.3 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 36/121 (29%), Positives = 53/121 (43%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
R+QL + +R + P+PI + G + +E P IQ + + G D +A
Sbjct: 187 RRQLGITVRGRGVPRPIVDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLA 246
Query: 164 ITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVRRGR--MIDLL 221
+TGSGKT AFLLP++ Q + PT EL Q R+ + M L
Sbjct: 247 SADTGSGKTAAFLLPVILRALSQSKSPSGLV------LTPTRELAIQIERQAKELMSGLP 300
Query: 222 C 222
C
Sbjct: 301 C 301
Score = 115 (45.5 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D++ + V++ ++ V V+DEAD M MGF+ Q+ +++ + D Q VL S T
Sbjct: 332 GRLLDIIKQRSVELGSIKIV---VVDEADTMLKMGFQQQVLDVLEQLPHDCQTVLASATI 388
Query: 275 PPRVEILA 282
P VE LA
Sbjct: 389 PASVEQLA 396
Score = 80 (33.2 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ V RGLD ++LV+NFD P+ ++YVH
Sbjct: 501 VSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVH 532
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 116 (45.9 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 31/102 (30%), Positives = 45/102 (44%)
Query: 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177
KP KT+ + LT + + + + IQ A L+ G D +A +TGSGKT AFLL
Sbjct: 338 KPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
Query: 178 PMLRHIWEQXXXXXXXXXXXX---XXMAPTGELVRQQVRRGR 216
P++ + + + PT EL Q GR
Sbjct: 398 PIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGR 439
Score = 105 (42.0 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 32/74 (43%), Positives = 40/74 (54%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQ-NIRP---DRQAVL 269
GR I C+ G L + + VLDEADRM D MGF I IV + P +RQ ++
Sbjct: 477 GR-IKHFCEEGT--IKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLM 533
Query: 270 FSPTFPPRVEILAR 283
FS TFP V+ AR
Sbjct: 534 FSATFPDSVQEAAR 547
Score = 97 (39.2 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSCAFR---FISEENAIYATD 348
IA +V RGLD K ++ VIN+D P++ +DY+H ++ + R FISE+ ++ + +
Sbjct: 661 IATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFISEDCSLLS-E 719
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV ++ +V D ++ A
Sbjct: 720 LVGVLADAQQIVPDWMQGAA 739
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 116 (45.9 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 31/102 (30%), Positives = 45/102 (44%)
Query: 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177
KP KT+ + LT + + + + IQ A L+ G D +A +TGSGKT AFLL
Sbjct: 338 KPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
Query: 178 PMLRHIWEQXXXXXXXXXXXX---XXMAPTGELVRQQVRRGR 216
P++ + + + PT EL Q GR
Sbjct: 398 PIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGR 439
Score = 105 (42.0 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 32/74 (43%), Positives = 40/74 (54%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQ-NIRP---DRQAVL 269
GR I C+ G L + + VLDEADRM D MGF I IV + P +RQ ++
Sbjct: 477 GR-IKHFCEEGT--IKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLM 533
Query: 270 FSPTFPPRVEILAR 283
FS TFP V+ AR
Sbjct: 534 FSATFPDSVQEAAR 547
Score = 97 (39.2 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSCAFR---FISEENAIYATD 348
IA +V RGLD K ++ VIN+D P++ +DY+H ++ + R FISE+ ++ + +
Sbjct: 661 IATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFISEDCSLLS-E 719
Query: 349 LVKAFELSELVVRDDLKAVA 368
LV ++ +V D ++ A
Sbjct: 720 LVGVLADAQQIVPDWMQGAA 739
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 128 (50.1 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 28/68 (41%), Positives = 38/68 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL+ + N + VLDEAD M DMGF + I+ + RQ +LFS T
Sbjct: 134 GRLLDLIETGDI---NFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATM 190
Query: 275 PPRVEILA 282
P +EILA
Sbjct: 191 PAEIEILA 198
Score = 92 (37.4 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
L I++ + ++ P IQ +I+G D + I +TG+GKT AF LP++ + +
Sbjct: 9 LLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK-FGRN 67
Query: 188 XXXXXXXXXXXXXMAPTGELVRQ 210
+ PT EL Q
Sbjct: 68 KIDIKAKSTRSLILTPTRELASQ 90
Score = 85 (35.0 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R E L K + + +A V ARG+D + LVIN++ P D +Y+H
Sbjct: 284 REEALQNFKDSTLRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIH 331
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 114 (45.2 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPM 179
++ +++ GL T +L+ + L E P IQ A LI+ G + V TG+GKT A+LLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 180 LRHI 183
L+ I
Sbjct: 61 LQRI 64
Score = 106 (42.4 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D + G K + ++LDEAD M DMGF I I+ + +Q +LFS T
Sbjct: 128 GRILDHI---GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATL 184
Query: 275 PPRVEILARK 284
P ++ + +K
Sbjct: 185 PAPIKTIIKK 194
Score = 88 (36.0 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K L +A V ARGLD ++ VINFD P + E Y+H
Sbjct: 286 KAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIH 325
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 114 (45.2 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPM 179
++ +++ GL T +L+ + L E P IQ A LI+ G + V TG+GKT A+LLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 180 LRHI 183
L+ I
Sbjct: 61 LQRI 64
Score = 106 (42.4 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D + G K + ++LDEAD M DMGF I I+ + +Q +LFS T
Sbjct: 128 GRILDHI---GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATL 184
Query: 275 PPRVEILARK 284
P ++ + +K
Sbjct: 185 PAPIKTIIKK 194
Score = 88 (36.0 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K L +A V ARGLD ++ VINFD P + E Y+H
Sbjct: 286 KAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIH 325
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 173 (66.0 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 44/114 (38%), Positives = 67/114 (58%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RP---DRQAVLF 270
GR++DLL + V +L+++ YLVLDEADRM DMGFEPQI +I+ P DRQ ++F
Sbjct: 389 GRLVDLLMRGRV---SLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDRQTLMF 445
Query: 271 SPTFPPRVEILARKT--NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYV 322
S TFP +++ LA N L + + + ++ +E V+ D + DY+
Sbjct: 446 SATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQR-IEYVVEEDKNSYLLDYL 498
Score = 97 (39.2 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174
CAP + ++ L +L + P +Q A +I+ D +A +TGSGKT A
Sbjct: 243 CAP--LNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAA 300
Query: 175 FLLPMLRHI 183
FL P++ I
Sbjct: 301 FLFPIISGI 309
Score = 96 (38.9 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
+A + +RGL + LVINFD P D YVH ++ K A F +E+N +
Sbjct: 559 VATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAE 618
Query: 349 LVKAFELSELVVRD 362
L+K + S + D
Sbjct: 619 LLKLMKASNQDIPD 632
>UNIPROTKB|J3KRZ1 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270
PROSITE:PS00039 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AC009994
HGNC:HGNC:2746 ChiTaRS:DDX5 Ensembl:ENST00000577787 Uniprot:J3KRZ1
Length = 166
Score = 197 (74.4 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 64 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 119
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 120 WPKEVRQLA 128
>UNIPROTKB|J3QSF1 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 HGNC:HGNC:2746 ChiTaRS:DDX5 Ensembl:ENST00000579996
Uniprot:J3QSF1
Length = 153
Score = 197 (74.4 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 215 GRMIDLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR+ID L C TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T
Sbjct: 12 GRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 67
Query: 274 FPPRVEILA 282
+P V LA
Sbjct: 68 WPKEVRQLA 76
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 111 (44.1 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 215 GRMIDLLCKNGVKITNL-TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
GR I +L +N + + +R +LVLDEADR+ D+GF+ ++ I Q + RQ +LFS T
Sbjct: 185 GR-IKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSAT 243
Query: 274 FPPRVEIL 281
++ L
Sbjct: 244 MTSNLQAL 251
Score = 103 (41.3 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE 185
GL +ET +L P +Q I++G D + + +TGSGKT AF LP+L + E
Sbjct: 64 GLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAE 122
Score = 94 (38.1 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R+ L++ K+ + +A V +RGLD ++LVIN+D P D DYVH
Sbjct: 341 RLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVH 388
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 111 (44.1 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID++ + ++ N+ +V L+LDEAD +F GF+ QI I +++ P Q V+ S T
Sbjct: 153 GRVIDVIKRRNLQTRNI-KV--LILDEADELFTKGFKEQIYEIYKHLPPSVQVVVVSATL 209
Query: 275 PPRV-EILARKT 285
P V E+ ++ T
Sbjct: 210 PREVLEMTSKFT 221
Score = 98 (39.6 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATD 348
I+ V ARG+D +++ LVIN+D P D E+Y+H +S K A I++++ + +
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKE 379
Query: 349 LVKAF 353
K +
Sbjct: 380 FEKYY 384
Score = 95 (38.5 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
+T+ L +L+ E P AIQ+ A IISG D++A ++G+GKT F + ML
Sbjct: 26 RTFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGML 85
Query: 181 RHI 183
I
Sbjct: 86 EVI 88
>FB|FBgn0029880 [details] [associations]
symbol:CG14443 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:AE014298 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:NP_572330.2 ProteinModelPortal:Q9W3Y5 SMR:Q9W3Y5
IntAct:Q9W3Y5 MINT:MINT-1614529 PRIDE:Q9W3Y5 GeneID:31595
KEGG:dme:Dmel_CG14443 UCSC:CG14443-RA FlyBase:FBgn0029880
OrthoDB:EOG4DFN5J PhylomeDB:Q9W3Y5 GenomeRNAi:31595 NextBio:774378
Bgee:Q9W3Y5 GermOnline:CG14443 Uniprot:Q9W3Y5
Length = 438
Score = 120 (47.3 bits), Expect = 6.5e-15, Sum P(3) = 6.5e-15
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++ ++ N + L R TYLVLD DRM D+G E I R++ +RP Q ++ S ++
Sbjct: 160 GRLLQMI-DNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLRPHAQLIVSSTSW 218
Query: 275 PPRVEILARK 284
++ +A K
Sbjct: 219 SSNLKRMANK 228
Score = 108 (43.1 bits), Expect = 6.5e-15, Sum P(3) = 6.5e-15
Identities = 25/95 (26%), Positives = 49/95 (51%)
Query: 95 EITRMSPAYRKQLDLKIRE---KCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPA 151
E+ + YRK+ ++ + + P+P+ ++ ++G IL+ ++ P IQA
Sbjct: 3 EVYNNAANYRKRHNITLTSWNMRNLPEPVLSFERSGFNATILQQLEDQGYDGPTPIQAQT 62
Query: 152 SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
++ G + V I+ G+GKTL +LLP + + Q
Sbjct: 63 WSIAKEGKNIVMISGKGTGKTLGYLLPGIMKMHNQ 97
Score = 76 (31.8 bits), Expect = 6.5e-15, Sum P(3) = 6.5e-15
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC----CQSWLKSC-AFRFIS 339
T N+ +A + + LD + VIN+D P++ + YV C S+ ++C F +
Sbjct: 328 TGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRTGCLSYNRNCEVISFFT 387
Query: 340 EENAIYATDLVKAFELSELVVRDDLKAVAD 369
N T++V ++ + + L +A+
Sbjct: 388 MANYKLVTEVVDFLKICKQEIGPHLLQLAE 417
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 123 (48.4 bits), Expect = 7.0e-15, Sum P(3) = 7.0e-15
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 104 RKQLDLKIREK--CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDS 161
R++LD+ ++ + P P+ T+ GL K+L ++ P IQ A ++G
Sbjct: 91 RRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSL 150
Query: 162 VAITETGSGKTLAFLLPMLRHI--WEQXXXXXXXXXXXXXXMAPTGELVRQQVRRGRMI 218
+A +TGSGKT +FL+P++ + +APT EL Q + +M+
Sbjct: 151 LASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKML 209
Score = 105 (42.0 bits), Expect = 7.0e-15, Sum P(3) = 7.0e-15
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL K+ +++ N+ +T+ VLDE D M GF Q+ +I Q + Q +LFS T
Sbjct: 245 GRVVDLLSKHTIELDNI--MTF-VLDEVDCMLQRGFRDQVMQIFQALSQP-QVLLFSATI 300
Query: 275 PPRVE 279
VE
Sbjct: 301 SREVE 305
Score = 78 (32.5 bits), Expect = 7.0e-15, Sum P(3) = 7.0e-15
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH---HCCQSWLKSCAFRFISEENAIYATD 348
++ V RG+D + VI FD P+ ++Y+H + K A F++E++ D
Sbjct: 413 VSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPD 472
Query: 349 LVKAFELSELVVRDDL 364
LV A + S + +L
Sbjct: 473 LVAALKSSGAAIPKEL 488
>UNIPROTKB|J3QRQ7 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:2746
ChiTaRS:DDX5 Ensembl:ENST00000577922 Uniprot:J3QRQ7
Length = 212
Score = 195 (73.7 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 72 EIIKSKIKID-YQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQT 126
+++K K +D + KNFY + ++ R + YR+ ++ +R PKP+ + +
Sbjct: 40 KLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEA 99
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ ++ N P AIQA + +SGLD V + +TGSGKTL++LLP + HI Q
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 160 PFLERGDGPICLV-LAPTRELA-QQVQQ 185
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 139 (54.0 bits), Expect = 7.6e-15, Sum P(5) = 7.6e-15
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 207 LVRQQVRRGRMIDLLCKNGVKITNLTRV----TY----LVLDEADRMFDMGFEPQITRIV 258
L +Q R GRM L+C G + +L + TY LVLDEADR+ DMGF+ + I+
Sbjct: 160 LKEEQERLGRMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAII 219
Query: 259 QNIRPDRQAVLFSPTFPPRVEILAR 283
++ P+RQ +LFS T +V LAR
Sbjct: 220 GHLPPERQTLLFSATQTKKVSDLAR 244
Score = 100 (40.3 bits), Expect = 7.6e-15, Sum P(5) = 7.6e-15
Identities = 33/107 (30%), Positives = 53/107 (49%)
Query: 105 KQLDLKIR-EKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
+ LDLK + E + PI +GLT+ +T + IQ+ A + + G D +
Sbjct: 39 EDLDLKAKYESFSDLPISEPTLSGLTSSHFKTLTD--------IQSRAISHALKGRDVLG 90
Query: 164 ITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
+TGSGKTLAFL+P+L +++ + ++PT EL Q
Sbjct: 91 AAKTGSGKTLAFLVPILENLYRKQWSDHDGLGALI--ISPTRELAIQ 135
Score = 71 (30.1 bits), Expect = 7.6e-15, Sum P(5) = 7.6e-15
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 277 RVEILARKTNVCNLSI-ANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R++I R + + + + V ARGLD ++ VI D P D + Y+H
Sbjct: 333 RLDITTRFSQAQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIH 380
Score = 38 (18.4 bits), Expect = 7.6e-15, Sum P(5) = 7.6e-15
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 394 LMKRRIRRGKQLRKAQAKEYGFGEDKSDSE------DVDEGTRKSGG 434
+ K++ R K+ RKA+ +E E++ + D DE +GG
Sbjct: 707 IAKQKRREKKEKRKARERELLAEEEREERVAQLVPFDEDEDMGDAGG 753
Score = 37 (18.1 bits), Expect = 7.6e-15, Sum P(5) = 7.6e-15
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 337 FISEENAIYATDLVKAFELSELVVRDDLKA 366
FIS ++Y + F L EL + DD A
Sbjct: 452 FISYVKSVYIQKDKETFNLKELKL-DDFAA 480
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 124 (48.7 bits), Expect = 8.8e-15, Sum P(3) = 8.8e-15
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 230 NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283
+L+ + Y+V DEADR+F+MGF Q+T I+ + RQ +LFS T P + AR
Sbjct: 232 DLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLLFSATLPKSLVEFAR 285
Score = 102 (41.0 bits), Expect = 8.8e-15, Sum P(3) = 8.8e-15
Identities = 31/116 (26%), Positives = 52/116 (44%)
Query: 98 RMSPAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS 157
+ + A RK +LK R K ++ GL +L+ ++ P IQ +I+
Sbjct: 71 KQTSANRKSANLKGR---TVKKGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIME 127
Query: 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVR 213
D V + TGSGKT AF++PM+ E+ ++P+ EL Q ++
Sbjct: 128 DQDVVGMARTGSGKTAAFVIPMI----EKLKSHSTKFGARGLILSPSRELALQTLK 179
Score = 89 (36.4 bits), Expect = 8.8e-15, Sum P(3) = 8.8e-15
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 277 RVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSC 333
++++ +T + N+ + V ARG+D L VIN+D P+ + +VH ++ K
Sbjct: 413 KIQVQNFRTGISNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGW 472
Query: 334 AFRFISEENAIYATDL 349
++ + + +A Y DL
Sbjct: 473 SYSLVRDADAPYLLDL 488
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 138 (53.6 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++ L + G+ +L++V Y+V DEADR+F+MGF Q+T I+ + +RQ +LFS T
Sbjct: 359 GRLMHHLLETGM---SLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLLFSATL 415
Query: 275 P 275
P
Sbjct: 416 P 416
Score = 105 (42.0 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 113 EKCAPKPIKT--WRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSG 170
E + K KT ++ LT +L+ K P IQ + +I+ G D V + TGSG
Sbjct: 220 ETTSKKKKKTGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSG 279
Query: 171 KTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
KT AF++PM++ + + ++PT EL Q
Sbjct: 280 KTGAFVIPMIQKLGDHSTTVGVRAVI----LSPTRELAIQ 315
Score = 72 (30.4 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 17/76 (22%), Positives = 36/76 (47%)
Query: 277 RVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSC 333
++ + +++ + + + ARG+D L+ VINFD P + ++H ++
Sbjct: 537 KINLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGI 596
Query: 334 AFRFISEENAIYATDL 349
A+ +S + Y DL
Sbjct: 597 AYSLVSPDEVPYMIDL 612
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 142 (55.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSPT 273
GR++DL+ + NL +V YLVLDEADRM + GFE I I+ N +RQ ++F+ T
Sbjct: 281 GRLVDLINDGAI---NLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTAT 337
Query: 274 FPPRVEILARKTNVCNLSIANSVRAR 299
+P V LA N N + +V R
Sbjct: 338 WPKEVRELAN--NFMNSPVKVTVGDR 361
Score = 122 (48.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 38/143 (26%), Positives = 69/143 (48%)
Query: 90 YTQAREITRMSPA----YRKQLDLKIREKCAP--KPIKTWRQTGLTTKILETFSKLNHEN 143
YTQ+ +++ +S + + ++ + + + +PI ++ Q LT+ I SK +
Sbjct: 118 YTQSSKLSSVSQSDIDKFLSDNEITVEDPSSSSLRPILSFDQVQLTSAITSKLSKF--DK 175
Query: 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAP 203
P IQ+ + ++SG D + + ETGSGKT AF +P + +I ++P
Sbjct: 176 PTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNI----ITTGNTKTLSVLCISP 231
Query: 204 TGELVRQQVRRGRMIDLLCKNGV 226
T EL Q +I+L +GV
Sbjct: 232 TRELALQIY--DNLIELTADSGV 252
Score = 88 (36.0 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 282 ARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
A K+ NL +A V ARGLD +++VIN P EDYVH
Sbjct: 445 AFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVH 486
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 117 (46.2 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 230 NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275
+L V Y+V DEADR+F+MGF Q+ ++ ++ +RQ++LFS T P
Sbjct: 239 DLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQSLLFSATLP 284
Score = 115 (45.5 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183
GLT IL +K ++ P IQ LI+ G D V + TGSGKT AF+LP++ +
Sbjct: 105 GLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERL 161
Score = 76 (31.8 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISE 340
+ + N+ + V ARG+D L VINF P + ++H ++ K A+ ++E
Sbjct: 441 RVGLTNVLVVTDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNE 500
Query: 341 ENAIYATDL 349
+ Y DL
Sbjct: 501 KELPYLLDL 509
Score = 45 (20.9 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 15/74 (20%), Positives = 36/74 (48%)
Query: 339 SEENAIYATDLVKA-FELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKR 397
S+E+ + +++++ ++ L+ ++L+ D+F+AK+ +L++
Sbjct: 598 SQESLKRSKEIIESSWDDQHLLFGENLEKQKDAFLAKLQDRNSKQTVFELKGSDESLVEF 657
Query: 398 RIRRGKQLRKAQAK 411
RR +QL Q K
Sbjct: 658 MNRRRRQLAPIQRK 671
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 126 (49.4 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++ + +N + N + + LVLDEADR DMGF+ + I++N P RQ +LFS T
Sbjct: 202 GRLLQHMDEN--PLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQ 259
Query: 275 PPRVEILAR 283
V+ LAR
Sbjct: 260 TNTVQDLAR 268
Score = 105 (42.0 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 97 TRMSPAYRKQLDLKIR-EKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALI 155
+R++ + DLK + + IK + Q L+ K + ++ +P +Q +
Sbjct: 47 SRLAATEAEIQDLKTKYAEIDATAIKKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPA 106
Query: 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQ 210
+ G D + TGSGKTLAFL+P+L H++ ++PT EL Q
Sbjct: 107 LQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAII--ISPTRELAYQ 159
Score = 71 (30.1 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 279 EILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS 328
E RK++V S V +RGLD + V+ D P D Y+H +S
Sbjct: 378 EDFLRKSHVVMFS--TDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRS 425
Score = 47 (21.6 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 394 LMKRRIRRGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGGDISH 438
L+K+R + ++ + +A+E +D+ + +D D+ +G + H
Sbjct: 703 LVKKRHKLQREKLRKKAEEAKGSDDEEEQQD-DDNADDAGSESDH 746
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 140 (54.3 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD-RQAVLFSPT 273
GR++DLL + V +L++V YLVLDEADRM + GFE I I++ RQ ++F+ T
Sbjct: 240 GRLLDLLQEGSV---DLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTAT 296
Query: 274 FPPRVEILARK--TNVCNLSIANS 295
+P V LA N +SI N+
Sbjct: 297 WPKEVRELASTFMNNPIKVSIGNT 320
Score = 122 (48.0 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 89 FYTQAREITRMSPA----YRKQLDLKIREKC--APKPIKTWRQTGLTTKILETFSKLNHE 142
FY Q+ +T + + Y K+ ++ + + A +P+ ++ L + I SK
Sbjct: 76 FYVQSEALTSLPQSDIDEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISKF--P 133
Query: 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183
P IQA A ++SG D V + ETGSGKT AF +P + H+
Sbjct: 134 KPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL 174
Score = 85 (35.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K+ NL +A V ARGLD ++ VIN P EDYVH
Sbjct: 406 KSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVH 445
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 123 (48.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR + L K +K+ L+ + Y+V DEADR+F+MGF Q+T I+ + RQ +LFS T
Sbjct: 198 GRFLHL--KVEMKL-ELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATL 254
Query: 275 P 275
P
Sbjct: 255 P 255
Score = 115 (45.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 27/91 (29%), Positives = 41/91 (45%)
Query: 123 WRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRH 182
++ GL +L K + P IQ L++ G D V + TGSGKT AF++PM+ H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 183 IWEQXXXXXXXXXXXXXXMAPTGELVRQQVR 213
+ ++P EL Q V+
Sbjct: 131 L----KSTLANSNTRALILSPNRELALQTVK 157
Score = 73 (30.8 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFRFISEENAIY 345
NL + V +RG+D L VIN+D P + +VH ++ A+ + E+A Y
Sbjct: 398 NLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGY 457
Query: 346 ATDLVKAFELSELVVRDDLKAVADS 370
DL + F L+ +V + DS
Sbjct: 458 LLDL-QLF-LNRPLVTSSKQVKTDS 480
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 128 (50.1 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 41/153 (26%), Positives = 68/153 (44%)
Query: 75 KSKIKIDYQQLRKNFYTQ--AREITRM---SPAYRKQLDLKIREKCAPKPIKTWRQT--- 126
++K K + +Q+ KN + +E+ R RKQ + + P P+K++ +
Sbjct: 87 RAKGKAE-EQITKNEIVENPKKELNRQMERDALSRKQYSIHVSGNNIPPPLKSFAELSSR 145
Query: 127 -GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE 185
G IL ++L + P IQ A +++SG + A TGSGKT AF+ PML +
Sbjct: 146 YGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKR 205
Query: 186 QXXXXXXXXXXXXXXMAPTGELVRQQVRRGRMI 218
++P EL Q R G+ +
Sbjct: 206 PSTDGIRAVI-----LSPARELAAQTAREGKKL 233
Score = 98 (39.6 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 227 KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRVEILAR 283
K +L++V YLVLDE+D++F+ QI +V+ P LFS T P VE LAR
Sbjct: 276 KKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELAR 333
Score = 77 (32.2 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS 328
IA V ARG+D K + VIN+D P+ Y+H +S
Sbjct: 435 IATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRS 471
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 123 (48.4 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ D++ G +L+ VT LV+DEADRM D+GF I ++ + I P Q +LFS T+
Sbjct: 131 GRLFDII---GQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATY 187
Query: 275 PPRVEILARK 284
V+ L+ K
Sbjct: 188 SDAVKQLSHK 197
Score = 93 (37.8 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
GL++ +L ++ ++ +Q L + G D +A +TG+GKT AF LP+L +
Sbjct: 7 GLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQL--- 63
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQ 210
M PT EL Q
Sbjct: 64 AAKPADKPLLRALVMTPTRELAIQ 87
Score = 84 (34.6 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSCAFRFIS 339
K + +A V ARGLD + L LVIN + P EDYVH ++ + R IS
Sbjct: 288 KAGKLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAIS 343
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 123 (48.4 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ D++ G +L+ VT LV+DEADRM D+GF I ++ + I P Q +LFS T+
Sbjct: 131 GRLFDII---GQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATY 187
Query: 275 PPRVEILARK 284
V+ L+ K
Sbjct: 188 SDAVKQLSHK 197
Score = 93 (37.8 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
GL++ +L ++ ++ +Q L + G D +A +TG+GKT AF LP+L +
Sbjct: 7 GLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQL--- 63
Query: 187 XXXXXXXXXXXXXXMAPTGELVRQ 210
M PT EL Q
Sbjct: 64 AAKPADKPLLRALVMTPTRELAIQ 87
Score = 84 (34.6 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSCAFRFIS 339
K + +A V ARGLD + L LVIN + P EDYVH ++ + R IS
Sbjct: 288 KAGKLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAIS 343
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 127 (49.8 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL + V +L+ V LVLDEADRM DMGF + +++ + RQ +LFS TF
Sbjct: 138 GRLLDLAGQGSV---DLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATF 194
Query: 275 PPRVEILARK 284
+ LA K
Sbjct: 195 SNDITSLAGK 204
Score = 93 (37.8 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R + LA K + +A + ARGLD +L V+NF+ PN EDYVH
Sbjct: 288 RTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVH 335
Score = 85 (35.0 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIW 184
GL+ ++ + P +Q A ++ G D + +TG+GKT F LP+L ++
Sbjct: 7 GLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLF 64
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 164 (62.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 38/73 (52%), Positives = 50/73 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN--IRP--DRQAVLF 270
GR+ DLL + + + N V YLVLDEADRM DMGFEPQI IV++ + P +RQ ++F
Sbjct: 284 GRLNDLLERGKISLAN---VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMF 340
Query: 271 SPTFPPRVEILAR 283
S TFP ++ LAR
Sbjct: 341 SATFPADIQHLAR 353
Score = 113 (44.8 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 41/119 (34%), Positives = 57/119 (47%)
Query: 208 VRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITR--IVQNIRPDR 265
V Q ++ ++DLL LT L+ E RM D Q+T I+QN R
Sbjct: 381 VENQDKKSALLDLL---SASTDGLT----LIFVETKRMAD-----QLTDFLIMQNFRAT- 427
Query: 266 QAVLFSPTFPPRVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
A+ T R LA ++ L +A +V ARGLD + VIN+D P+D +DYVH
Sbjct: 428 -AIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVH 485
Score = 97 (39.2 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 114 KCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTL 173
K P+PI + L +LE P +Q + ++ +G D +A +TGSGKT
Sbjct: 135 KDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTG 194
Query: 174 AFLLPML 180
FL P+L
Sbjct: 195 GFLFPVL 201
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 159 (61.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 43/115 (37%), Positives = 64/115 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI----RPDRQAVLF 270
GR+ DLL + V ++ + +L LDEADRM DMGFEPQI +IV+ + R RQ +LF
Sbjct: 296 GRLNDLLERARV---SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLF 352
Query: 271 SPTFPPRVEILARK--TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
S TFP ++ LA N L++ + L + +E V++ D + D +H
Sbjct: 353 SATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLH 407
Score = 102 (41.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 26/98 (26%), Positives = 43/98 (43%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P P+ T+ + L + + + P +Q A +++ G D +A +TGSGKT AF
Sbjct: 155 PPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFC 214
Query: 177 LPMLRHIWE----QXXXXXXXXXXXXXXMAPTGELVRQ 210
P++ I + Q ++PT EL Q
Sbjct: 215 FPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252
Score = 102 (41.0 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 278 VEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KS-CA 334
V + A K+ + +A V ARGLD + V+NFD PND +DYVH ++ KS A
Sbjct: 459 VALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA 518
Query: 335 FRFISEENAIYATDLVKAFE 354
F ++ N A L + +
Sbjct: 519 TAFFNDGNTSLARPLAELMQ 538
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 127 (49.8 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL + V +L+ V LVLDEADRM DMGF + +++ + RQ +LFS TF
Sbjct: 138 GRLLDLAGQGSV---DLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATF 194
Query: 275 PPRVEILARK 284
+ LA K
Sbjct: 195 SKDITDLAGK 204
Score = 93 (37.8 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R + LA K + +A + ARGLD +L V+NF+ PN EDYVH
Sbjct: 288 RTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVH 335
Score = 83 (34.3 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIW 184
GL+ ++ + P +Q A ++ G D + +TG+GKT F LP+L ++
Sbjct: 7 GLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLF 64
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 136 (52.9 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ D+L K K +L L LDEADR+ D+GFE I + + + RQ +LFS T
Sbjct: 238 GRLKDILAK---KKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATM 294
Query: 275 PPRVEILARKTNVCNLSI-ANSVRARGLDE-KELELV 309
P +++I A V +++ A LD +E+E V
Sbjct: 295 PAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYV 331
Score = 124 (48.7 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 97 TRMSPAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII 156
T+ RKQ + + + P PIK + + +L +P IQ +++
Sbjct: 73 TKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVL 132
Query: 157 SGLDSVAITETGSGKTLAFLLPML 180
SG D + I TGSGKTL F+LPM+
Sbjct: 133 SGRDMIGIAFTGSGKTLVFVLPMI 156
Score = 83 (34.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ++GLD +++ VIN+D P + E+YVH
Sbjct: 403 VATDVASKGLDFPDIQHVINYDMPGEIENYVH 434
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 167 (63.8 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 39/73 (53%), Positives = 49/73 (67%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RP---DRQAVLF 270
GR+ DLL + V + N + YLVLDEADRM DMGFEPQI IV+ P DRQ ++F
Sbjct: 328 GRLKDLLDRGKVSLAN---IRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMF 384
Query: 271 SPTFPPRVEILAR 283
S TFP +++LAR
Sbjct: 385 SATFPRDIQMLAR 397
Score = 113 (44.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 44/165 (26%), Positives = 69/165 (41%)
Query: 208 VRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDE-ADRMFDMGFEPQITRIVQNIRPDRQ 266
V ++ ++DLL N +T + T + D AD ++D GF P I DR
Sbjct: 425 VEDDEKKSVILDLLSANENGLTIVFTETKRMADNLADYLYDQGF-PATA-----IHGDRS 478
Query: 267 AVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCC 326
+ + A K + +A +V ARGLD + VIN+D P+D +DYVH
Sbjct: 479 Q------YEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIG 532
Query: 327 QSWLKS---CAFRFISEENAIYATDLVKAFELSELVVRDDLKAVA 368
++ A F + N L++ + V D L +A
Sbjct: 533 RTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEVPDFLTKIA 577
Score = 93 (37.8 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P+PI ++ L ++E P +Q + ++ +G D +A +TGSGKT FL
Sbjct: 182 PEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFL 241
Query: 177 LPML 180
P+L
Sbjct: 242 FPVL 245
>DICTYBASE|DDB_G0292010 [details] [associations]
symbol:DDB_G0292010 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292010 GO:GO:0005524
EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
ProtClustDB:CLSZ2846571 RefSeq:XP_629765.1
ProteinModelPortal:Q54DV7 EnsemblProtists:DDB0184159 GeneID:8628441
KEGG:ddi:DDB_G0292010 InParanoid:Q54DV7 OMA:VESSCKP Uniprot:Q54DV7
Length = 777
Score = 165 (63.1 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DL+ ++ + L V L+LDEADRM +GF Q+ +I + IRPDRQ ++FS TF
Sbjct: 446 GRLVDLIQRSKEVVGLLGGVGMLILDEADRMLQLGFGDQLQKISEQIRPDRQTLMFSATF 505
Query: 275 PPRVEILARK--TNVCNLSIANSVRARG---LDEKELELVINFDAPNDYEDYVHHCCQSW 329
P ++ A+K TN + + +S +G + K ++ V+ A + Y+ S
Sbjct: 506 PQTMQDAAKKWLTNPLKIRVKSSSTNQGSTSIISKNVKQVVKPIAEKEKSKYLTTFINSI 565
Query: 330 LK 331
+K
Sbjct: 566 MK 567
Score = 96 (38.9 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASAL------IISGLDSVAITETGSG 170
P+PI T+ L + + L + P +I AP I+SG D ++I +TGSG
Sbjct: 280 PRPIITFEDQDLPLSMKKFIGFLTTKYP-SITAPTPVQSQCWPGILSGQDILSIAQTGSG 338
Query: 171 KTLAFLLPMLRHIWE 185
KTL +LLP + +I E
Sbjct: 339 KTLGYLLPAIPNILE 353
Score = 85 (35.0 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 284 KTNVCNLSIANSVRARGLD-EKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFIS 339
K+ ++ +A + RG+ L VIN+D P+ E YVH ++ K A +
Sbjct: 629 KSGKISILVATDILGRGIHIGGNLRFVINYDFPSSLEQYVHRVGRTGRQGNKGHALTLFT 688
Query: 340 E--ENAIYATDLVKAFELSELVVRDDLKAVADSF 371
+ +N A L+K E + + DL +AD+F
Sbjct: 689 DTPQNTPMARGLIKILEECKQQISPDLIKLADNF 722
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 161 (61.7 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 46/115 (40%), Positives = 64/115 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPD---RQAVLF 270
GR+ DLL + V +L V +L LDEADRM DMGFEPQI +IVQ + P RQ +LF
Sbjct: 283 GRLNDLLERGRV---SLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLF 339
Query: 271 SPTFPPRVEILARK--TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
S TFP ++ LA +N L++ + L + +E V + D + D +H
Sbjct: 340 SATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLH 394
Score = 107 (42.7 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 30/94 (31%), Positives = 44/94 (46%)
Query: 278 VEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCA 334
V + + KT + +A V ARGLD + V+NFD PND +DYVH ++ A
Sbjct: 446 VALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLA 505
Query: 335 FRFISEENAIYATDLVKAFELSELVVRDDLKAVA 368
F ++ N A L + + + V D L A
Sbjct: 506 TAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYA 539
Score = 98 (39.6 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P P+ T+ + L + + + P +Q A ++ +G D +A +TGSGKT AF
Sbjct: 142 PPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFC 201
Query: 177 LPMLRHI 183
P++ I
Sbjct: 202 FPIISGI 208
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 120 (47.3 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D++ ++ V++ + V V+DEAD M MGF+ Q+ I++++ D Q +L S T
Sbjct: 332 GRLLDIIKQSSVELCGIKIV---VVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATI 388
Query: 275 PPRVEILA 282
P +E LA
Sbjct: 389 PTSIEQLA 396
Score = 100 (40.3 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
++QL + ++ + +PI + G + +E P IQ + + G D +A
Sbjct: 187 KRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLA 246
Query: 164 ITETGSGKTLAFLLPML 180
+TGSGKT AFLLP++
Sbjct: 247 SADTGSGKTAAFLLPVI 263
Score = 80 (33.2 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ V RGLD + LV+NFD P+ ++YVH
Sbjct: 501 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVH 532
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 129 (50.5 bits), Expect = 5.2e-14, Sum P(3) = 5.2e-14
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D L + + +L+ + LVLDEADRM DMGF+ I+ ++ P RQ +LFS T+
Sbjct: 132 GRLLDHLRRGSL---DLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSATY 188
Query: 275 PPRVEILA 282
P + ++
Sbjct: 189 PDSIAAMS 196
Score = 88 (36.0 bits), Expect = 5.2e-14, Sum P(3) = 5.2e-14
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
K + L +L + L + IQA + LI++G D +A +TGSGKT AF + +L
Sbjct: 4 KAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLL 63
Query: 181 RHI 183
+
Sbjct: 64 SRL 66
Score = 78 (32.5 bits), Expect = 5.2e-14, Sum P(3) = 5.2e-14
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 277 RVEILARKTN-VCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R +L R N ++ +A V ARGLD KEL VIN++ + E + H
Sbjct: 281 RDRVLVRFANRSASVLVATDVAARGLDIKELSAVINYELTRNPEVHTH 328
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 111 (44.1 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D++ ++ V +L+ + +V+DEAD M MGF+ Q+ ++++ D Q +L S T
Sbjct: 331 GRLLDIIKQSSV---SLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATI 387
Query: 275 PPRVEIL 281
P +E L
Sbjct: 388 PDSIEQL 394
Score = 109 (43.4 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
++QL + ++ + +PI + G + + K +E P IQ + + G D +A
Sbjct: 186 KQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Query: 164 ITETGSGKTLAFLLPML 180
+TGSGKT AFLLP++
Sbjct: 246 SADTGSGKTAAFLLPVI 262
Score = 82 (33.9 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ V RGLD ++LV+NFD P+ ++YVH
Sbjct: 500 VSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVH 531
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 110 (43.8 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR ID + +N T + + +V+DEADRM + GF ++ I+Q RQ +LFS T
Sbjct: 389 GRFIDHM-RNSQGFT-VENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATM 446
Query: 275 PPRVEILAR 283
+V+ L R
Sbjct: 447 TDKVDDLIR 455
Score = 99 (39.9 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
+++ L+ IL+ S L E P IQ L + G D V TGSGKT AF++P+L
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 182 HI 183
+
Sbjct: 320 RL 321
Score = 96 (38.9 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
CN +A V +RG+D K +E+VIN++AP +E Y+H
Sbjct: 555 CNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLH 590
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 101 (40.6 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 215 GRMIDLLCKNGVK-ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD---RQAVLF 270
GR+ D + +G + I+ L RV YLVLDEADR+ F + R ++ P RQ +LF
Sbjct: 128 GRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCF-DVLPTSDKRQTLLF 186
Query: 271 SPTFPPRVEILARK 284
+ T V L K
Sbjct: 187 TATITDAVRALKEK 200
Score = 100 (40.3 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 36/105 (34%), Positives = 51/105 (48%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKS 332
R L R K + IA V +RGLD +ELVINFD P D +D++H ++ K
Sbjct: 292 RTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKG 351
Query: 333 CAFRFISEENA--IYATD--LVKAFELSELVVRDDLKAVADSFIA 373
A I E++ I + + + K EL E V DD + +S A
Sbjct: 352 DAVSIIGEKDIDRIQSIEERINKKMELLE-DVNDD-NVIKESLSA 394
Score = 96 (38.9 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
++ G+ + E+ + P AIQ+ I+ G D + +TGSGKT+AF PML
Sbjct: 2 SFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLT 61
Query: 182 HIWEQ 186
W +
Sbjct: 62 Q-WSE 65
Score = 42 (19.8 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 344 IYATDLV-KAFELS--ELVVRDDLKAVADSFIAKV 375
+ ATD+ + ++ ELV+ D+ A D FI +V
Sbjct: 307 LIATDVASRGLDIPTVELVINFDIPADPDDFIHRV 341
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 131 (51.2 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 44/147 (29%), Positives = 72/147 (48%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D+ + ++ + + LVLDEADRM DMGF I +I++ + RQ +LFS T
Sbjct: 137 GRLLDMTHQ---RVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNLLFSATM 193
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELEL-VINFDAPNDYEDYVHHCC-QSWLKS 332
V LA++T + + S+ A + ++E ++ D N H Q+W +
Sbjct: 194 SEEVRGLAKRT--IHKPVEISIGADKASKPKIEQWLVTVDKANKSALLSHIITTQNWQQ- 250
Query: 333 CAFRFISEENAIYATDLVKAFELSELV 359
A FI ++ A LV E +V
Sbjct: 251 -ALIFIETKHG--AAKLVSQLEKRGIV 274
Score = 122 (48.0 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI---W 184
L+T IL + L + P AIQ A ++++G D +A +TG+GKT +F+LP+L + +
Sbjct: 8 LSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQY 67
Query: 185 EQXXXXXXXXXXXXXXMAPTGELVRQ 210
++ + PT EL Q
Sbjct: 68 KETGKKLRAKRIRALILVPTRELAVQ 93
Score = 90 (36.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
K+ +A ++ ARGLD EL VIN+D P +DY+H
Sbjct: 295 KSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIH 334
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 120 (47.3 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++D++ ++ V++ + V V+DEAD M MGF+ Q+ I++++ D Q +L S T
Sbjct: 332 GRLLDIIKQSSVELCGIKIV---VVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATI 388
Query: 275 PPRVEILA 282
P +E LA
Sbjct: 389 PTSIEQLA 396
Score = 100 (40.3 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
++QL + ++ + +PI + G + +E P IQ + + G D +A
Sbjct: 187 KRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLA 246
Query: 164 ITETGSGKTLAFLLPML 180
+TGSGKT AFLLP++
Sbjct: 247 SADTGSGKTAAFLLPVI 263
Score = 80 (33.2 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ V RGLD + LV+NFD P+ ++YVH
Sbjct: 501 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVH 532
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 123 (48.4 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++ + +N + +V LVLDEADRM DMGF Q+ I+ N+ +RQ +LFS T
Sbjct: 206 GRLLQHMDENAQMSCDSLQV--LVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFSATQ 263
Query: 275 PPRVEILAR 283
V+ L R
Sbjct: 264 TRNVKDLCR 272
Score = 102 (41.0 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQX 187
L+ + LE ++ P IQ A ++G D V +TGSGKTLA ++P+L +W
Sbjct: 83 LSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWR-- 140
Query: 188 XXXXXXXXXXXXXMAPTGELVRQ 210
++PT EL Q
Sbjct: 141 AKWSPDYGLGALIISPTRELALQ 163
Score = 77 (32.2 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS 328
IA V +RGLD + ++ VI D P +DY+H +S
Sbjct: 377 IATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRS 413
Score = 38 (18.4 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 85 LRKNFYTQAREITRMSPAY 103
L+ N YT+ EI R + AY
Sbjct: 91 LKDNDYTKPTEIQRDTIAY 109
>RGD|1359520 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1359520 GO:GO:0005524
GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 173 (66.0 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 51/182 (28%), Positives = 86/182 (47%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
++QL + ++ + +PI + G + + K +E P IQ + + G D +A
Sbjct: 186 KQQLGISVQGQEVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Query: 164 ITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVRRG--RMIDLL 221
+TGSGKT AFLLP++ + +A E +++ RG RM +L
Sbjct: 246 SADTGSGKTAAFLLPVIIRALPEDKTPSALILTPTRELAIQIERQAKELMRGLPRMKTVL 305
Query: 222 CKNGVKIT-NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEI 280
G+ + L R+ V +AD M MGF+ Q+ ++++ D Q VL S T P ++
Sbjct: 306 LVGGLPLPPQLYRLQQHV--KADTMLKMGFQQQVLDVLEHTPSDCQTVLVSATIPDSIDQ 363
Query: 281 LA 282
LA
Sbjct: 364 LA 365
Score = 81 (33.6 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ + RGLD ++LV+NFD P+ ++YVH
Sbjct: 470 VSTGILGRGLDLVNVKLVVNFDMPSSLDEYVH 501
>UNIPROTKB|Q66HG7 [details] [associations]
symbol:Ddx59 "Probable ATP-dependent RNA helicase DDX59"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1359520
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 173 (66.0 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 51/182 (28%), Positives = 86/182 (47%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
++QL + ++ + +PI + G + + K +E P IQ + + G D +A
Sbjct: 186 KQQLGISVQGQEVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Query: 164 ITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVRRG--RMIDLL 221
+TGSGKT AFLLP++ + +A E +++ RG RM +L
Sbjct: 246 SADTGSGKTAAFLLPVIIRALPEDKTPSALILTPTRELAIQIERQAKELMRGLPRMKTVL 305
Query: 222 CKNGVKIT-NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEI 280
G+ + L R+ V +AD M MGF+ Q+ ++++ D Q VL S T P ++
Sbjct: 306 LVGGLPLPPQLYRLQQHV--KADTMLKMGFQQQVLDVLEHTPSDCQTVLVSATIPDSIDQ 363
Query: 281 LA 282
LA
Sbjct: 364 LA 365
Score = 81 (33.6 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
++ + RGLD ++LV+NFD P+ ++YVH
Sbjct: 470 VSTGILGRGLDLVNVKLVVNFDMPSSLDEYVH 501
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 111 (44.1 bits), Expect = 9.4e-14, Sum P(3) = 9.4e-14
Identities = 28/69 (40%), Positives = 38/69 (55%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR ID + +N T + + LVLDEADRM + GF ++ I+ I RQ +LFS T
Sbjct: 428 GRFIDHM-RNSASFT-VDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATM 485
Query: 275 PPRVEILAR 283
V+ L R
Sbjct: 486 TDSVDKLIR 494
Score = 100 (40.3 bits), Expect = 9.4e-14, Sum P(3) = 9.4e-14
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 110 KIREKCAPKPIK-TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETG 168
K E A K ++++ L+ IL + +N NP IQ + + G D V TG
Sbjct: 286 KTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTG 345
Query: 169 SGKTLAFLLPMLRHI 183
SGKT AF++P+L +
Sbjct: 346 SGKTAAFVVPILERL 360
Score = 93 (37.8 bits), Expect = 9.4e-14, Sum P(3) = 9.4e-14
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 283 RKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R NV N +A + +RGLD K +E VIN++AP +E YVH
Sbjct: 590 RDGNV-NFLLATDLASRGLDIKGVETVINYEAPQSHEIYVH 629
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 112 (44.5 bits), Expect = 9.5e-14, Sum P(4) = 9.5e-14
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 237 LVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283
LVLDEADR+ DMGF + IV+N+ RQ +LFS T V+ LAR
Sbjct: 220 LVLDEADRILDMGFADTLNAIVENLPKSRQTLLFSATQTRSVKDLAR 266
Score = 107 (42.7 bits), Expect = 9.5e-14, Sum P(4) = 9.5e-14
Identities = 38/136 (27%), Positives = 60/136 (44%)
Query: 75 KSKIKIDYQQLRKNFYTQAREITRMSPAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILE 134
K+K K+ Q K + E+ R + +K +D K E PK + L+ K L+
Sbjct: 29 KTKTKVKRSQKSK-VKKRDWEVEREN--IKKLVD-KYSE-INPKEAVKFSDFPLSKKTLK 83
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
+ + P IQ + G D + +TGSGKTLAFL+P+L ++ +
Sbjct: 84 GLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECLYREQWTAMDGL 143
Query: 195 XXXXXXMAPTGELVRQ 210
++PT EL Q
Sbjct: 144 GALI--ISPTRELAYQ 157
Score = 79 (32.9 bits), Expect = 9.5e-14, Sum P(4) = 9.5e-14
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 277 RVEI---LARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
RVE+ RKT+ + A + ARGLD + V+ FD P D Y+H
Sbjct: 355 RVEVYNDFVRKTSA--VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 402
Score = 46 (21.3 bits), Expect = 9.5e-14, Sum P(4) = 9.5e-14
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 394 LMKRRIRRGKQLRKAQAKEYGFGEDKSDSEDVDEG 428
L ++ RR + + K G+D + +D DEG
Sbjct: 752 LKEKAARREASKQHKEEKRKADGDDDDNDDDEDEG 786
Score = 38 (18.4 bits), Expect = 6.0e-13, Sum P(4) = 6.0e-13
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 396 KRRIRRGKQLRKAQAKEYGFGEDKSDSEDVD-EGTRKSGGD 435
++R++ K R+ +K++ + K+D +D D + G D
Sbjct: 749 EKRLKE-KAARREASKQHKEEKRKADGDDDDNDDDEDEGAD 788
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 107 (42.7 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 27/99 (27%), Positives = 45/99 (45%)
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPM 179
IKT+ L +LE ++ P +QA A + G D +A TG+GKT AF++P
Sbjct: 2 IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
Query: 180 LRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVRRGRMI 218
L+++ + + PT EL Q + + +
Sbjct: 62 LQYLLD--FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Score = 105 (42.0 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPR 277
+ +L+LDEADRM DMGF P + R+ R +Q +LFS T R
Sbjct: 150 IEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSATLEGR 193
Score = 81 (33.6 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
N+ +A V ARG+D ++ VINFD P + Y+H
Sbjct: 298 NILLATDVAARGIDVPDISHVINFDLPRSADVYLH 332
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 107 (42.7 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 27/99 (27%), Positives = 45/99 (45%)
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPM 179
IKT+ L +LE ++ P +QA A + G D +A TG+GKT AF++P
Sbjct: 2 IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
Query: 180 LRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVRRGRMI 218
L+++ + + PT EL Q + + +
Sbjct: 62 LQYLLD--FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Score = 105 (42.0 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPR 277
+ +L+LDEADRM DMGF P + R+ R +Q +LFS T R
Sbjct: 150 IEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSATLEGR 193
Score = 81 (33.6 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
N+ +A V ARG+D ++ VINFD P + Y+H
Sbjct: 298 NILLATDVAARGIDVPDISHVINFDLPRSADVYLH 332
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 111 (44.1 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RP-DRQAVLFSP 272
GR+ID + ++ NL + +VLDEADRMFD+GF I + + + P DR +LFS
Sbjct: 143 GRIIDFYKQ---RVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSA 199
Query: 273 TFPPRVEILA 282
T RV+ LA
Sbjct: 200 TLSYRVQELA 209
Score = 97 (39.2 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 31/102 (30%), Positives = 42/102 (41%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
GL ++++ K IQA A +++SG D +TG+GKTLAFL H+
Sbjct: 15 GLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTT 74
Query: 187 XXXXXXXXXX-XXXXMAPTGELVRQQVRRGRMIDLLCKNGVK 227
MAPT EL Q LL G+K
Sbjct: 75 PAAEGRAETQPRAIIMAPTRELAIQIFNDAE--PLLASTGLK 114
Score = 85 (35.0 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSCAFRFISEENAIYATD 348
++ +A V ARGL ++ V N+D P+D EDYVH ++ + IS YA +
Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
Query: 349 L 349
L
Sbjct: 368 L 368
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 111 (44.1 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RP-DRQAVLFSP 272
GR+ID + ++ NL + +VLDEADRMFD+GF I + + + P DR +LFS
Sbjct: 143 GRIIDFYKQ---RVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSA 199
Query: 273 TFPPRVEILA 282
T RV+ LA
Sbjct: 200 TLSYRVQELA 209
Score = 97 (39.2 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 31/102 (30%), Positives = 42/102 (41%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
GL ++++ K IQA A +++SG D +TG+GKTLAFL H+
Sbjct: 15 GLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTT 74
Query: 187 XXXXXXXXXX-XXXXMAPTGELVRQQVRRGRMIDLLCKNGVK 227
MAPT EL Q LL G+K
Sbjct: 75 PAAEGRAETQPRAIIMAPTRELAIQIFNDAE--PLLASTGLK 114
Score = 85 (35.0 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSCAFRFISEENAIYATD 348
++ +A V ARGL ++ V N+D P+D EDYVH ++ + IS YA +
Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
Query: 349 L 349
L
Sbjct: 368 L 368
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 111 (44.1 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID + + +++ ++ V VLDEAD M +MGF I I+ ++ +RQ +LFS T
Sbjct: 129 GRIIDHINRGTLRLEHVHTV---VLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATM 185
Query: 275 PPRVEILARK 284
P + +A +
Sbjct: 186 PDPIRRIAER 195
Score = 94 (38.1 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+++ GL+ ++++ ++ E IQA L + D + +TG+GKT AF +P++
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 182 HI 183
+
Sbjct: 63 KV 64
Score = 89 (36.4 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R+ +L + K + +A V ARGLD + V NFD P D E YVH
Sbjct: 279 RLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 118 (46.6 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++ + + +K+ + V Y+V DEADR+F+MGF Q+ I+ + Q VLFS T
Sbjct: 224 GRLVHVAVEMNLKLQS---VEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATL 280
Query: 275 PPRVEILAR 283
P + AR
Sbjct: 281 PKLLVEFAR 289
Score = 115 (45.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 96 ITRMSPAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALI 155
++ + P R+ + + ++K K ++ GL+ + + K ++ P IQ +I
Sbjct: 73 VSDVEPDTREMVRAQNKKK---KKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXXXXXXXXMAPTGELVRQQVR 213
+ G D VA+ TGSGKT FLLPM +E+ ++PT EL Q ++
Sbjct: 130 LDGKDVVAMARTGSGKTACFLLPM----FERLKARSAQTGARALILSPTRELALQTMK 183
Score = 70 (29.7 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 281 LARKT-NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC---CQSWLKSCAFR 336
LA+ T N C+ I + ARGLD L+ VIN+ P + ++H ++ A+
Sbjct: 380 LAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYS 439
Query: 337 FISEENAIYATDL 349
++ + Y DL
Sbjct: 440 LVAPDEVPYLLDL 452
WARNING: HSPs involving 516 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 494 417 0.00082 118 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 766
No. of states in DFA: 611 (65 KB)
Total size of DFA: 254 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.02u 0.50s 29.52t Elapsed: 00:00:01
Total cpu time: 29.06u 0.50s 29.56t Elapsed: 00:00:01
Start: Fri May 10 05:20:22 2013 End: Fri May 10 05:20:23 2013
WARNINGS ISSUED: 2