Query 042373
Match_columns 494
No_of_seqs 479 out of 2989
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0334 RNA helicase [RNA proc 100.0 5.7E-77 1.2E-81 653.6 25.0 464 11-490 223-858 (997)
2 KOG0339 ATP-dependent RNA heli 100.0 7.7E-71 1.7E-75 563.5 24.8 324 64-393 164-631 (731)
3 KOG0336 ATP-dependent RNA heli 100.0 1.1E-66 2.4E-71 522.0 20.3 297 75-374 162-605 (629)
4 KOG0331 ATP-dependent RNA heli 100.0 2.4E-63 5.3E-68 523.1 21.1 287 80-370 16-477 (519)
5 KOG0341 DEAD-box protein abstr 100.0 1.4E-63 3E-68 496.9 15.6 317 78-398 123-587 (610)
6 PLN00206 DEAD-box ATP-dependen 100.0 2E-60 4.3E-65 515.7 32.5 351 11-368 6-502 (518)
7 PTZ00110 helicase; Provisional 100.0 7.1E-60 1.5E-64 513.7 30.1 317 68-394 74-533 (545)
8 KOG0330 ATP-dependent RNA heli 100.0 1.3E-58 2.8E-63 462.6 20.8 246 120-373 60-442 (476)
9 KOG0338 ATP-dependent RNA heli 100.0 1.6E-56 3.6E-61 458.9 22.3 229 120-353 180-545 (691)
10 KOG0333 U5 snRNP-like RNA heli 100.0 1.2E-56 2.5E-61 461.5 19.4 273 94-369 214-653 (673)
11 KOG0335 ATP-dependent RNA heli 100.0 3.4E-55 7.3E-60 454.9 18.2 257 109-368 62-471 (482)
12 COG0513 SrmB Superfamily II DN 100.0 7.9E-53 1.7E-57 455.0 23.5 235 121-362 29-405 (513)
13 KOG0340 ATP-dependent RNA heli 100.0 2.8E-52 6E-57 413.1 17.5 236 119-360 5-380 (442)
14 KOG0345 ATP-dependent RNA heli 100.0 8.7E-51 1.9E-55 414.2 20.3 227 121-349 4-372 (567)
15 KOG0342 ATP-dependent RNA heli 100.0 2.4E-50 5.2E-55 413.4 20.6 228 120-351 81-447 (543)
16 KOG0328 Predicted ATP-dependen 100.0 9.6E-51 2.1E-55 391.7 16.5 241 116-365 22-397 (400)
17 KOG0348 ATP-dependent RNA heli 100.0 5.9E-50 1.3E-54 412.7 18.3 235 116-352 131-565 (708)
18 KOG0343 RNA Helicase [RNA proc 100.0 5.1E-50 1.1E-54 414.2 16.3 230 119-352 67-434 (758)
19 PRK04837 ATP-dependent RNA hel 100.0 2.2E-48 4.8E-53 411.9 23.7 237 120-359 7-380 (423)
20 PRK10590 ATP-dependent RNA hel 100.0 1.7E-48 3.6E-53 416.7 22.2 234 121-357 1-368 (456)
21 KOG0347 RNA helicase [RNA proc 100.0 7.9E-49 1.7E-53 405.4 16.4 262 116-377 176-607 (731)
22 KOG0326 ATP-dependent RNA heli 100.0 4.4E-49 9.6E-54 385.5 12.3 235 121-364 85-452 (459)
23 KOG0346 RNA helicase [RNA proc 100.0 1.1E-47 2.4E-52 388.6 18.3 234 121-356 19-425 (569)
24 PRK11776 ATP-dependent RNA hel 100.0 8.4E-47 1.8E-51 403.9 22.6 229 120-357 3-365 (460)
25 PRK04537 ATP-dependent RNA hel 100.0 2E-46 4.3E-51 410.0 24.5 237 119-357 7-380 (572)
26 PRK11634 ATP-dependent RNA hel 100.0 2.4E-46 5.3E-51 412.3 24.9 231 120-359 5-370 (629)
27 KOG0344 ATP-dependent RNA heli 100.0 6.3E-46 1.4E-50 388.3 20.6 266 102-369 113-523 (593)
28 PRK11192 ATP-dependent RNA hel 100.0 6E-45 1.3E-49 386.7 23.8 230 121-355 1-366 (434)
29 PRK01297 ATP-dependent RNA hel 100.0 2E-44 4.2E-49 387.2 24.9 246 118-366 84-469 (475)
30 KOG0337 ATP-dependent RNA heli 100.0 1.8E-44 3.8E-49 363.9 11.1 227 121-355 21-382 (529)
31 PTZ00424 helicase 45; Provisio 100.0 4.9E-43 1.1E-47 367.4 21.5 235 119-362 26-395 (401)
32 KOG0332 ATP-dependent RNA heli 100.0 3.1E-42 6.8E-47 343.4 17.7 242 118-367 87-471 (477)
33 KOG0327 Translation initiation 100.0 1.1E-42 2.5E-47 348.8 11.6 240 117-365 22-394 (397)
34 KOG0350 DEAD-box ATP-dependent 100.0 7.2E-42 1.6E-46 350.9 16.8 242 130-378 146-582 (620)
35 KOG4284 DEAD box protein [Tran 100.0 2.2E-40 4.8E-45 347.2 13.5 220 115-343 19-381 (980)
36 TIGR03817 DECH_helic helicase/ 100.0 1E-38 2.2E-43 358.0 21.8 223 127-357 20-404 (742)
37 KOG0329 ATP-dependent RNA heli 100.0 8.7E-39 1.9E-43 305.2 10.6 233 121-363 42-378 (387)
38 PLN03137 ATP-dependent DNA hel 100.0 1.4E-36 3.1E-41 342.3 20.9 217 122-350 436-796 (1195)
39 TIGR00614 recQ_fam ATP-depende 100.0 9.4E-36 2E-40 319.6 21.4 200 138-351 6-343 (470)
40 PRK11057 ATP-dependent DNA hel 100.0 1.4E-34 3.1E-39 319.1 21.2 209 127-350 8-352 (607)
41 PRK02362 ski2-like helicase; P 100.0 3.4E-33 7.4E-38 314.7 23.4 209 121-341 1-397 (737)
42 PRK13767 ATP-dependent helicas 100.0 1.8E-33 3.9E-38 321.1 21.3 211 128-340 18-397 (876)
43 TIGR01389 recQ ATP-dependent D 100.0 6.8E-33 1.5E-37 305.4 18.9 200 135-349 4-339 (591)
44 PRK00254 ski2-like helicase; P 100.0 2.2E-32 4.8E-37 307.4 21.4 210 122-342 2-389 (720)
45 PRK01172 ski2-like helicase; P 100.0 2.1E-30 4.6E-35 289.6 19.7 206 121-341 1-378 (674)
46 KOG0349 Putative DEAD-box RNA 100.0 3.3E-30 7.2E-35 260.9 8.7 259 120-381 1-687 (725)
47 PRK09401 reverse gyrase; Revie 100.0 2.6E-29 5.5E-34 291.8 16.8 174 139-327 77-427 (1176)
48 TIGR00580 mfd transcription-re 100.0 1.2E-28 2.6E-33 280.4 21.8 200 127-341 435-770 (926)
49 PRK10917 ATP-dependent DNA hel 100.0 4.5E-28 9.7E-33 270.6 22.4 196 130-340 248-588 (681)
50 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-28 2.8E-33 274.1 17.1 185 139-340 12-390 (844)
51 PRK10689 transcription-repair 100.0 3.4E-28 7.3E-33 282.0 18.9 194 132-340 590-918 (1147)
52 TIGR00643 recG ATP-dependent D 100.0 9E-28 2E-32 266.2 21.2 196 130-339 223-564 (630)
53 COG0514 RecQ Superfamily II DN 100.0 8.7E-28 1.9E-32 258.2 19.5 204 134-352 7-348 (590)
54 COG1201 Lhr Lhr-like helicases 100.0 1E-27 2.2E-32 265.8 18.8 209 128-340 8-361 (814)
55 PHA02653 RNA helicase NPH-II; 100.0 2.8E-28 6.1E-33 269.2 14.1 193 146-343 167-516 (675)
56 PRK14701 reverse gyrase; Provi 99.9 2.5E-27 5.5E-32 280.8 18.0 188 131-333 67-445 (1638)
57 TIGR01970 DEAH_box_HrpB ATP-de 99.9 5.2E-27 1.1E-31 264.5 17.5 182 150-344 9-339 (819)
58 PRK11664 ATP-dependent RNA hel 99.9 7.1E-27 1.5E-31 263.7 15.5 181 150-343 12-341 (812)
59 TIGR01054 rgy reverse gyrase. 99.9 2.6E-26 5.5E-31 267.2 18.6 171 131-317 66-410 (1171)
60 cd00268 DEADc DEAD-box helicas 99.9 1E-25 2.3E-30 214.4 17.4 155 123-284 1-194 (203)
61 TIGR01587 cas3_core CRISPR-ass 99.9 3.9E-26 8.5E-31 236.3 12.4 171 160-341 1-336 (358)
62 PRK09751 putative ATP-dependen 99.9 1.2E-25 2.5E-30 263.0 16.6 178 163-342 1-384 (1490)
63 PHA02558 uvsW UvsW helicase; P 99.9 1.9E-24 4.1E-29 233.9 20.0 173 141-331 112-439 (501)
64 KOG0352 ATP-dependent DNA heli 99.9 7.4E-24 1.6E-28 214.9 18.5 205 131-351 6-372 (641)
65 COG1205 Distinct helicase fami 99.9 9.5E-24 2.1E-28 239.0 15.5 219 128-354 55-437 (851)
66 KOG0354 DEAD-box like helicase 99.9 5.6E-23 1.2E-27 223.8 19.9 143 128-280 47-227 (746)
67 PRK12898 secA preprotein trans 99.9 4E-23 8.6E-28 225.9 15.7 61 139-211 100-160 (656)
68 KOG0351 ATP-dependent DNA heli 99.9 4.3E-23 9.4E-28 233.0 15.5 207 132-351 252-602 (941)
69 PRK11131 ATP-dependent RNA hel 99.9 5.2E-23 1.1E-27 237.4 16.5 177 151-344 82-414 (1294)
70 TIGR03158 cas3_cyano CRISPR-as 99.9 9.7E-23 2.1E-27 211.7 15.9 53 147-211 1-55 (357)
71 COG1111 MPH1 ERCC4-like helica 99.9 2.1E-22 4.6E-27 209.2 18.0 127 141-279 13-177 (542)
72 PRK09200 preprotein translocas 99.9 3E-22 6.4E-27 223.2 20.2 96 139-246 75-212 (790)
73 PRK13766 Hef nuclease; Provisi 99.9 1.8E-21 4E-26 221.0 21.4 123 140-274 12-172 (773)
74 COG1204 Superfamily II helicas 99.9 1.3E-21 2.8E-26 219.1 16.8 141 127-278 15-194 (766)
75 PF00270 DEAD: DEAD/DEAH box h 99.9 1.2E-21 2.7E-26 180.0 13.1 127 145-281 1-169 (169)
76 PRK05580 primosome assembly pr 99.9 7.2E-21 1.6E-25 212.4 21.3 128 143-279 144-309 (679)
77 TIGR03714 secA2 accessory Sec 99.9 6.5E-21 1.4E-25 211.0 20.1 97 139-247 67-209 (762)
78 KOG0353 ATP-dependent DNA heli 99.9 3.6E-21 7.8E-26 193.0 15.7 187 124-323 74-403 (695)
79 TIGR00963 secA preprotein tran 99.9 3.8E-21 8.1E-26 211.8 15.7 97 139-247 53-190 (745)
80 TIGR01967 DEAH_box_HrpA ATP-de 99.8 2E-20 4.3E-25 216.8 18.1 191 139-344 60-407 (1283)
81 KOG0952 DNA/RNA helicase MER3/ 99.8 3.6E-20 7.9E-25 204.4 17.0 235 138-378 105-525 (1230)
82 COG1202 Superfamily II helicas 99.8 9.8E-20 2.1E-24 190.8 13.4 207 122-342 195-554 (830)
83 TIGR00603 rad25 DNA repair hel 99.8 3E-18 6.6E-23 189.7 16.6 72 286-357 541-625 (732)
84 TIGR00595 priA primosomal prot 99.7 5.2E-17 1.1E-21 175.8 15.6 110 162-280 1-145 (505)
85 KOG0951 RNA helicase BRR2, DEA 99.7 5.2E-17 1.1E-21 181.7 14.7 243 126-378 294-736 (1674)
86 KOG0947 Cytoplasmic exosomal R 99.7 1.4E-16 3.1E-21 174.7 16.3 129 138-279 293-449 (1248)
87 PRK09694 helicase Cas3; Provis 99.7 1E-15 2.2E-20 173.7 20.8 64 141-211 284-347 (878)
88 COG4581 Superfamily II RNA hel 99.7 3.1E-16 6.8E-21 177.2 15.6 133 134-279 111-275 (1041)
89 COG1200 RecG RecG-like helicas 99.7 2.6E-15 5.7E-20 162.2 20.4 214 127-355 246-605 (677)
90 PRK12899 secA preprotein trans 99.7 1.4E-16 2.9E-21 178.2 9.8 115 124-247 65-229 (970)
91 COG1061 SSL2 DNA or RNA helica 99.7 3.7E-16 7.9E-21 166.8 12.6 170 142-327 35-372 (442)
92 KOG0948 Nuclear exosomal RNA h 99.7 2E-16 4.3E-21 170.0 10.4 125 143-279 129-281 (1041)
93 smart00487 DEXDc DEAD-like hel 99.6 2.1E-15 4.6E-20 139.6 13.5 137 138-284 3-180 (201)
94 PRK04914 ATP-dependent helicas 99.6 4.5E-14 9.7E-19 161.5 21.9 54 286-339 545-601 (956)
95 PRK11448 hsdR type I restricti 99.6 1.5E-14 3.3E-19 168.3 17.2 42 289-330 758-799 (1123)
96 COG1197 Mfd Transcription-repa 99.6 4.2E-14 9.2E-19 160.4 17.4 199 128-341 579-913 (1139)
97 PRK13104 secA preprotein trans 99.5 1.5E-13 3.3E-18 154.1 18.3 94 139-246 79-215 (896)
98 PRK12906 secA preprotein trans 99.5 7.2E-14 1.6E-18 155.7 14.2 61 139-211 77-137 (796)
99 KOG0950 DNA polymerase theta/e 99.5 3.1E-13 6.8E-18 149.5 14.6 216 127-351 207-621 (1008)
100 COG1643 HrpA HrpA-like helicas 99.5 4.4E-13 9.5E-18 150.8 15.8 178 153-342 60-388 (845)
101 COG4098 comFA Superfamily II D 99.5 2.4E-12 5.2E-17 129.0 18.1 189 143-343 97-418 (441)
102 TIGR00631 uvrb excinuclease AB 99.5 3.3E-13 7.2E-18 150.0 13.3 67 285-351 490-563 (655)
103 PRK12904 preprotein translocas 99.5 5E-13 1.1E-17 149.7 14.4 96 139-246 78-214 (830)
104 COG0556 UvrB Helicase subunit 99.4 9E-12 1.9E-16 131.0 15.8 83 285-367 494-592 (663)
105 KOG0949 Predicted helicase, DE 99.3 1.1E-11 2.4E-16 137.0 14.7 126 143-277 511-674 (1330)
106 KOG0922 DEAH-box RNA helicase 99.3 1.8E-11 3.9E-16 131.8 14.4 181 150-343 58-392 (674)
107 KOG2340 Uncharacterized conser 99.3 1.8E-11 3.8E-16 128.3 13.8 210 141-351 214-678 (698)
108 PRK13107 preprotein translocas 99.3 3.4E-11 7.4E-16 135.1 17.0 97 139-247 79-216 (908)
109 PF04851 ResIII: Type III rest 99.3 7.5E-12 1.6E-16 115.8 9.6 116 143-275 3-183 (184)
110 KOG0924 mRNA splicing factor A 99.3 2E-11 4.3E-16 130.9 12.9 182 144-341 357-697 (1042)
111 COG1198 PriA Primosomal protei 99.3 2.4E-10 5.2E-15 127.2 21.2 131 142-282 197-367 (730)
112 KOG0920 ATP-dependent RNA heli 99.3 4.7E-11 1E-15 134.4 15.7 188 145-342 175-545 (924)
113 cd00046 DEXDc DEAD-like helica 99.3 3.1E-11 6.8E-16 105.1 10.1 106 159-274 1-144 (144)
114 COG1203 CRISPR-associated heli 99.3 4.9E-11 1.1E-15 134.9 14.3 193 143-343 195-552 (733)
115 KOG0923 mRNA splicing factor A 99.3 5.8E-11 1.2E-15 127.2 13.9 180 150-341 272-606 (902)
116 PLN03142 Probable chromatin-re 99.2 5.2E-09 1.1E-13 120.8 25.7 64 288-351 541-611 (1033)
117 PF00271 Helicase_C: Helicase 99.1 2.2E-10 4.7E-15 92.4 7.1 69 264-332 7-78 (78)
118 PF06862 DUF1253: Protein of u 99.1 1.2E-09 2.7E-14 115.3 14.1 139 212-351 137-425 (442)
119 KOG0925 mRNA splicing factor A 99.1 2.5E-09 5.4E-14 111.5 15.8 214 119-341 23-387 (699)
120 KOG0926 DEAH-box RNA helicase 99.1 2.3E-10 5.1E-15 124.6 8.5 57 285-341 628-704 (1172)
121 TIGR00348 hsdR type I site-spe 99.1 1.2E-09 2.6E-14 122.5 14.3 63 286-354 590-659 (667)
122 PRK05298 excinuclease ABC subu 99.1 7.9E-10 1.7E-14 123.6 12.4 80 285-364 494-589 (652)
123 KOG4150 Predicted ATP-dependen 99.1 9.9E-10 2.2E-14 116.0 11.8 219 135-361 278-662 (1034)
124 COG1110 Reverse gyrase [DNA re 99.0 2.7E-09 5.8E-14 119.5 15.4 63 139-211 79-141 (1187)
125 TIGR01407 dinG_rel DnaQ family 98.9 2.9E-09 6.3E-14 122.6 10.9 74 128-211 231-308 (850)
126 COG4096 HsdR Type I site-speci 98.9 4.4E-09 9.6E-14 116.1 8.5 97 142-245 164-297 (875)
127 COG4889 Predicted helicase [Ge 98.8 1.4E-08 3E-13 111.8 8.7 78 121-211 140-222 (1518)
128 smart00490 HELICc helicase sup 98.7 4.3E-08 9.4E-13 78.3 7.8 69 264-332 11-82 (82)
129 PRK07246 bifunctional ATP-depe 98.7 4.6E-08 9.9E-13 112.0 9.9 64 137-211 240-307 (820)
130 PRK12900 secA preprotein trans 98.7 2.9E-07 6.2E-12 104.6 14.5 74 285-358 644-732 (1025)
131 TIGR02562 cas3_yersinia CRISPR 98.6 1.9E-07 4.2E-12 106.4 12.7 44 286-332 837-880 (1110)
132 KOG0953 Mitochondrial RNA heli 98.6 2.6E-07 5.7E-12 98.1 10.8 54 285-339 407-475 (700)
133 PF07652 Flavi_DEAD: Flaviviru 98.6 2.2E-07 4.8E-12 83.9 8.6 108 158-279 4-141 (148)
134 PRK12326 preprotein translocas 98.5 1.3E-06 2.9E-11 96.8 15.2 61 139-211 75-135 (764)
135 cd00079 HELICc Helicase superf 98.5 5.6E-07 1.2E-11 78.4 7.8 69 264-332 52-123 (131)
136 PRK13103 secA preprotein trans 98.4 6.8E-06 1.5E-10 93.2 17.1 61 139-211 79-139 (913)
137 PRK08074 bifunctional ATP-depe 98.4 9.3E-07 2E-11 102.9 10.4 64 139-211 254-321 (928)
138 KOG1123 RNA polymerase II tran 98.3 1.1E-06 2.4E-11 92.4 7.8 100 142-261 301-450 (776)
139 KOG0951 RNA helicase BRR2, DEA 98.3 1.4E-06 3E-11 99.6 8.5 114 141-273 1141-1298(1674)
140 TIGR03117 cas_csf4 CRISPR-asso 98.3 1E-06 2.2E-11 97.7 6.9 55 152-213 10-64 (636)
141 smart00488 DEXDc2 DEAD-like he 98.2 3.3E-06 7.1E-11 85.7 7.4 66 143-211 8-77 (289)
142 smart00489 DEXDc3 DEAD-like he 98.2 3.3E-06 7.1E-11 85.7 7.4 66 143-211 8-77 (289)
143 PF13604 AAA_30: AAA domain; P 98.2 1.2E-05 2.6E-10 76.9 10.6 117 143-272 1-129 (196)
144 PRK12903 secA preprotein trans 98.1 0.00011 2.4E-09 83.0 19.0 60 139-210 75-134 (925)
145 PF02562 PhoH: PhoH-like prote 98.1 1.8E-05 3.9E-10 76.2 10.3 118 142-270 3-152 (205)
146 PF02399 Herpes_ori_bp: Origin 98.0 3.4E-05 7.4E-10 86.4 10.4 117 158-284 48-200 (824)
147 PRK11747 dinG ATP-dependent DN 97.9 1.2E-05 2.6E-10 91.0 5.4 63 140-211 23-94 (697)
148 PF00176 SNF2_N: SNF2 family N 97.9 5.4E-05 1.2E-09 75.6 9.3 110 157-274 24-172 (299)
149 KOG0385 Chromatin remodeling c 97.9 0.0004 8.7E-09 76.8 16.1 57 286-342 539-600 (971)
150 PRK10536 hypothetical protein; 97.8 0.00018 4E-09 71.4 11.2 120 139-269 55-208 (262)
151 PRK14873 primosome assembly pr 97.8 0.00058 1.3E-08 76.7 16.2 71 165-244 167-268 (665)
152 COG1199 DinG Rad3-related DNA 97.6 0.00015 3.4E-09 81.4 8.6 66 138-211 10-79 (654)
153 TIGR01448 recD_rel helicase, p 97.6 0.00056 1.2E-08 77.8 12.8 123 138-272 319-451 (720)
154 COG3587 Restriction endonuclea 97.6 0.00046 1E-08 77.2 11.2 71 285-355 481-567 (985)
155 KOG0390 DNA repair protein, SN 97.5 0.0041 8.8E-08 70.2 17.4 54 288-341 649-707 (776)
156 PRK13889 conjugal transfer rel 97.5 0.0016 3.4E-08 76.0 14.4 120 139-272 343-469 (988)
157 PF09848 DUF2075: Uncharacteri 97.4 0.00053 1.1E-08 71.4 9.2 93 161-260 4-117 (352)
158 PRK15483 type III restriction- 97.4 0.00054 1.2E-08 78.9 9.7 46 159-211 60-105 (986)
159 KOG0387 Transcription-coupled 97.4 0.0022 4.8E-08 71.4 13.7 62 290-351 602-671 (923)
160 PRK10875 recD exonuclease V su 97.4 0.0012 2.6E-08 73.6 11.7 119 145-272 154-300 (615)
161 COG1875 NYN ribonuclease and A 97.4 0.0011 2.3E-08 68.4 10.3 123 138-270 223-384 (436)
162 PF07517 SecA_DEAD: SecA DEAD- 97.3 0.0012 2.6E-08 66.2 9.4 62 138-211 73-134 (266)
163 TIGR01447 recD exodeoxyribonuc 97.3 0.0021 4.6E-08 71.4 11.9 120 145-272 147-294 (586)
164 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0033 7.2E-08 71.8 13.6 130 128-271 338-474 (744)
165 PRK06526 transposase; Provisio 97.2 0.0017 3.8E-08 64.7 10.0 106 155-277 95-204 (254)
166 KOG0921 Dosage compensation co 97.2 0.001 2.3E-08 74.6 9.0 78 157-244 392-504 (1282)
167 PRK12902 secA preprotein trans 97.2 0.0011 2.3E-08 75.5 8.3 95 139-246 82-218 (939)
168 PRK08181 transposase; Validate 97.1 0.0041 9E-08 62.5 11.4 134 156-314 104-241 (269)
169 CHL00122 secA preprotein trans 97.0 0.00068 1.5E-08 77.0 5.3 61 139-211 73-133 (870)
170 KOG0389 SNF2 family DNA-depend 97.0 0.019 4.1E-07 64.2 15.7 54 288-342 830-889 (941)
171 PF05970 PIF1: PIF1-like helic 97.0 0.0024 5.3E-08 66.9 8.7 110 144-263 2-131 (364)
172 COG0610 Type I site-specific r 97.0 0.018 3.8E-07 67.7 16.4 64 285-354 591-661 (962)
173 PF13401 AAA_22: AAA domain; P 97.0 0.0029 6.3E-08 55.3 7.7 19 157-175 3-21 (131)
174 KOG0384 Chromodomain-helicase 97.0 0.0077 1.7E-07 69.9 12.8 58 285-342 750-812 (1373)
175 PRK06921 hypothetical protein; 96.9 0.014 3E-07 58.6 12.8 72 157-244 116-188 (266)
176 KOG1000 Chromatin remodeling p 96.8 0.028 6.1E-07 60.0 14.8 54 141-204 196-250 (689)
177 PF01695 IstB_IS21: IstB-like 96.8 0.0017 3.7E-08 61.2 5.1 100 157-273 46-149 (178)
178 KOG1802 RNA helicase nonsense 96.8 0.002 4.4E-08 70.4 6.0 160 135-310 402-573 (935)
179 PRK04296 thymidine kinase; Pro 96.8 0.0047 1E-07 58.7 7.8 95 159-272 3-113 (190)
180 PRK08116 hypothetical protein; 96.8 0.015 3.3E-07 58.4 11.8 102 159-278 115-225 (268)
181 PF13086 AAA_11: AAA domain; P 96.8 0.0033 7.2E-08 60.0 6.8 67 144-211 2-69 (236)
182 cd00009 AAA The AAA+ (ATPases 96.7 0.011 2.5E-07 51.2 9.6 25 158-183 19-43 (151)
183 PRK13826 Dtr system oriT relax 96.7 0.018 4E-07 67.8 13.8 132 127-272 366-504 (1102)
184 TIGR00604 rad3 DNA repair heli 96.7 0.004 8.6E-08 70.9 7.8 67 139-211 6-76 (705)
185 PF13245 AAA_19: Part of AAA d 96.6 0.0055 1.2E-07 49.6 6.2 55 152-211 3-58 (76)
186 PRK12377 putative replication 96.6 0.013 2.7E-07 58.3 9.8 99 158-273 101-205 (248)
187 PRK06893 DNA replication initi 96.6 0.0088 1.9E-07 58.5 8.4 96 159-277 40-137 (229)
188 KOG1803 DNA helicase [Replicat 96.5 0.007 1.5E-07 65.9 8.0 61 142-211 184-245 (649)
189 PRK08727 hypothetical protein; 96.5 0.0093 2E-07 58.5 8.2 94 159-275 42-137 (233)
190 PRK05642 DNA replication initi 96.5 0.011 2.3E-07 58.2 8.5 95 159-276 46-141 (234)
191 PRK06835 DNA replication prote 96.5 0.022 4.7E-07 59.0 11.1 110 157-278 182-293 (329)
192 PRK07952 DNA replication prote 96.5 0.032 7E-07 55.3 11.8 104 159-279 100-210 (244)
193 smart00382 AAA ATPases associa 96.4 0.015 3.2E-07 49.9 8.0 76 158-250 2-95 (148)
194 PF13872 AAA_34: P-loop contai 96.3 0.026 5.6E-07 57.3 9.7 74 124-211 24-107 (303)
195 COG1484 DnaC DNA replication p 96.2 0.018 4E-07 57.3 8.6 101 157-273 104-208 (254)
196 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.021 4.6E-07 54.9 8.8 94 157-273 37-131 (226)
197 PRK09183 transposase/IS protei 96.2 0.05 1.1E-06 54.4 11.6 75 155-245 99-176 (259)
198 PF00004 AAA: ATPase family as 96.2 0.017 3.6E-07 50.2 7.0 72 161-249 1-74 (132)
199 PRK14974 cell division protein 96.1 0.052 1.1E-06 56.3 11.6 53 232-284 221-274 (336)
200 PF00580 UvrD-helicase: UvrD/R 96.0 0.01 2.3E-07 59.4 5.9 70 144-222 1-70 (315)
201 PF00308 Bac_DnaA: Bacterial d 96.0 0.083 1.8E-06 51.4 11.8 151 160-365 36-191 (219)
202 TIGR00362 DnaA chromosomal rep 96.0 0.026 5.6E-07 59.9 9.0 105 159-278 137-246 (405)
203 KOG0733 Nuclear AAA ATPase (VC 96.0 0.2 4.3E-06 55.2 15.5 118 109-247 175-296 (802)
204 PRK08084 DNA replication initi 96.0 0.029 6.3E-07 55.1 8.7 96 158-276 45-142 (235)
205 TIGR02881 spore_V_K stage V sp 96.0 0.065 1.4E-06 53.3 11.2 90 159-262 43-138 (261)
206 PF05621 TniB: Bacterial TniB 96.0 0.025 5.4E-07 57.5 8.2 83 159-250 62-162 (302)
207 PRK00149 dnaA chromosomal repl 96.0 0.024 5.1E-07 61.1 8.6 106 159-279 149-259 (450)
208 PRK14712 conjugal transfer nic 96.0 0.056 1.2E-06 65.9 12.3 120 143-273 835-967 (1623)
209 cd01120 RecA-like_NTPases RecA 95.9 0.036 7.9E-07 49.5 8.3 18 231-248 83-100 (165)
210 TIGR02880 cbbX_cfxQ probable R 95.9 0.068 1.5E-06 54.1 11.1 75 158-246 58-134 (284)
211 KOG0989 Replication factor C, 95.9 0.013 2.8E-07 59.4 5.4 114 159-281 58-176 (346)
212 PF12340 DUF3638: Protein of u 95.8 0.044 9.6E-07 53.6 8.9 80 121-211 3-85 (229)
213 PRK12723 flagellar biosynthesi 95.8 0.062 1.3E-06 56.8 10.6 109 158-277 174-300 (388)
214 CHL00181 cbbX CbbX; Provisiona 95.8 0.096 2.1E-06 53.2 11.5 110 158-281 59-176 (287)
215 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.1 2.3E-06 48.3 10.7 53 231-283 93-147 (159)
216 PRK12422 chromosomal replicati 95.8 0.043 9.3E-07 59.2 9.4 107 159-281 142-252 (445)
217 PRK13894 conjugal transfer ATP 95.7 0.056 1.2E-06 55.7 9.7 67 133-208 124-191 (319)
218 PRK14722 flhF flagellar biosyn 95.7 0.042 9.1E-07 57.8 8.8 109 157-278 136-261 (374)
219 PRK14087 dnaA chromosomal repl 95.7 0.053 1.1E-06 58.6 9.7 105 159-278 142-253 (450)
220 PRK14086 dnaA chromosomal repl 95.6 0.054 1.2E-06 60.3 9.5 105 160-279 316-425 (617)
221 KOG0391 SNF2 family DNA-depend 95.6 0.15 3.2E-06 59.5 12.8 141 150-341 1241-1387(1958)
222 PHA02544 44 clamp loader, smal 95.5 0.057 1.2E-06 55.0 8.9 118 121-271 18-138 (316)
223 TIGR00376 DNA helicase, putati 95.5 0.032 7E-07 62.7 7.6 61 142-211 156-217 (637)
224 PRK13709 conjugal transfer nic 95.5 0.11 2.3E-06 64.3 12.2 121 143-272 967-1098(1747)
225 PRK05703 flhF flagellar biosyn 95.5 0.23 5E-06 53.2 13.6 113 158-284 221-353 (424)
226 KOG0952 DNA/RNA helicase MER3/ 95.4 0.0088 1.9E-07 68.6 2.7 107 142-257 926-1069(1230)
227 PRK12402 replication factor C 95.4 0.086 1.9E-06 53.9 9.8 39 232-271 124-162 (337)
228 PRK14088 dnaA chromosomal repl 95.4 0.09 2E-06 56.6 10.1 109 159-281 131-244 (440)
229 PRK07764 DNA polymerase III su 95.3 0.072 1.6E-06 61.6 9.7 46 232-279 119-164 (824)
230 PRK00411 cdc6 cell division co 95.3 0.12 2.6E-06 54.3 10.8 24 159-183 56-79 (394)
231 KOG0991 Replication factor C, 95.3 0.015 3.2E-07 57.0 3.3 106 159-275 49-154 (333)
232 TIGR02760 TraI_TIGR conjugativ 95.2 0.13 2.9E-06 64.6 12.2 107 142-260 1018-1135(1960)
233 KOG1002 Nucleotide excision re 95.2 0.078 1.7E-06 56.7 8.6 57 143-209 184-245 (791)
234 TIGR02760 TraI_TIGR conjugativ 95.2 0.14 3.1E-06 64.4 12.2 117 143-272 429-565 (1960)
235 PRK08903 DnaA regulatory inact 95.1 0.098 2.1E-06 50.7 8.6 92 157-276 41-133 (227)
236 PF13173 AAA_14: AAA domain 95.1 0.15 3.2E-06 45.0 8.9 96 158-272 2-97 (128)
237 PRK04195 replication factor C 95.0 0.14 3E-06 55.8 10.2 42 121-174 11-55 (482)
238 PTZ00454 26S protease regulato 94.9 0.12 2.5E-06 55.0 9.2 109 118-247 139-252 (398)
239 KOG1132 Helicase of the DEAD s 94.8 0.071 1.5E-06 60.5 7.3 42 143-184 21-66 (945)
240 PRK08939 primosomal protein Dn 94.7 0.17 3.6E-06 51.9 9.4 106 158-280 156-267 (306)
241 PRK07471 DNA polymerase III su 94.5 0.24 5.3E-06 52.0 10.4 44 328-371 229-272 (365)
242 PRK08769 DNA polymerase III su 94.5 0.38 8.2E-06 49.6 11.5 123 141-272 2-151 (319)
243 PRK11889 flhF flagellar biosyn 94.5 0.32 6.8E-06 51.7 10.9 113 159-284 242-373 (436)
244 PLN03025 replication factor C 94.5 0.16 3.5E-06 52.1 8.8 37 232-269 98-134 (319)
245 COG2805 PilT Tfp pilus assembl 94.4 0.061 1.3E-06 54.5 5.2 54 114-187 99-153 (353)
246 PRK06620 hypothetical protein; 94.3 0.088 1.9E-06 51.1 6.1 40 233-276 85-125 (214)
247 TIGR00708 cobA cob(I)alamin ad 94.3 0.47 1E-05 44.6 10.6 53 232-284 96-150 (173)
248 cd01124 KaiC KaiC is a circadi 94.3 0.13 2.8E-06 47.8 6.9 34 161-203 2-35 (187)
249 PRK13833 conjugal transfer pro 94.3 0.13 2.8E-06 53.1 7.4 65 135-208 122-187 (323)
250 TIGR03689 pup_AAA proteasome A 94.2 0.14 3.1E-06 56.0 8.0 52 120-174 178-232 (512)
251 COG3421 Uncharacterized protei 94.2 0.13 2.9E-06 56.2 7.5 22 285-306 328-349 (812)
252 PRK05707 DNA polymerase III su 94.1 0.32 6.9E-06 50.4 10.1 119 143-270 3-142 (328)
253 KOG0738 AAA+-type ATPase [Post 94.1 0.13 2.7E-06 53.9 6.9 79 152-247 234-318 (491)
254 PRK11034 clpA ATP-dependent Cl 94.1 0.28 6E-06 56.4 10.3 115 158-279 207-328 (758)
255 PRK12727 flagellar biosynthesi 94.1 1.2 2.6E-05 49.0 14.5 112 157-282 349-478 (559)
256 TIGR01243 CDC48 AAA family ATP 93.9 0.18 3.9E-06 57.8 8.5 109 118-247 447-560 (733)
257 PRK06731 flhF flagellar biosyn 93.9 0.5 1.1E-05 47.6 10.7 116 157-284 74-207 (270)
258 PF00448 SRP54: SRP54-type pro 93.9 0.32 6.9E-06 46.6 8.9 107 161-280 4-131 (196)
259 PF05496 RuvB_N: Holliday junc 93.9 0.29 6.3E-06 47.9 8.6 63 160-246 52-114 (233)
260 cd00984 DnaB_C DnaB helicase C 93.9 0.54 1.2E-05 45.7 10.7 46 157-210 12-60 (242)
261 TIGR01241 FtsH_fam ATP-depende 93.8 0.15 3.4E-06 55.6 7.5 109 118-247 49-161 (495)
262 TIGR02640 gas_vesic_GvpN gas v 93.8 0.35 7.6E-06 48.3 9.5 26 150-175 13-38 (262)
263 TIGR01420 pilT_fam pilus retra 93.7 0.23 5E-06 51.6 8.2 26 157-183 121-146 (343)
264 TIGR02928 orc1/cdc6 family rep 93.6 0.36 7.8E-06 50.0 9.5 24 159-183 41-64 (365)
265 TIGR00763 lon ATP-dependent pr 93.5 0.94 2E-05 52.3 13.4 74 157-247 346-428 (775)
266 PF13177 DNA_pol3_delta2: DNA 93.5 0.51 1.1E-05 43.6 9.2 105 160-273 21-141 (162)
267 COG1419 FlhF Flagellar GTP-bin 93.5 0.69 1.5E-05 48.9 11.1 108 158-278 203-327 (407)
268 TIGR02782 TrbB_P P-type conjug 93.4 0.27 5.9E-06 50.2 8.0 68 133-209 108-176 (299)
269 TIGR01242 26Sp45 26S proteasom 93.4 0.21 4.6E-06 52.2 7.2 17 158-174 156-172 (364)
270 TIGR01243 CDC48 AAA family ATP 93.3 0.19 4.2E-06 57.5 7.5 108 119-247 173-285 (733)
271 TIGR03015 pepcterm_ATPase puta 93.3 0.67 1.4E-05 45.7 10.3 32 143-174 23-59 (269)
272 PRK07003 DNA polymerase III su 93.3 0.57 1.2E-05 53.4 10.7 41 121-176 13-56 (830)
273 PRK05986 cob(I)alamin adenolsy 93.2 0.67 1.5E-05 44.3 9.6 116 156-284 20-168 (191)
274 PF03354 Terminase_1: Phage Te 93.2 0.15 3.2E-06 55.5 5.9 61 146-211 1-70 (477)
275 KOG0386 Chromatin remodeling c 93.1 0.38 8.3E-06 55.5 9.1 42 286-327 778-819 (1157)
276 PHA02533 17 large terminase pr 93.1 0.75 1.6E-05 50.8 11.3 62 143-211 59-120 (534)
277 COG2256 MGS1 ATPase related to 93.1 0.26 5.6E-06 51.9 7.2 91 159-273 49-139 (436)
278 PRK12323 DNA polymerase III su 93.0 0.48 1E-05 53.2 9.6 40 231-271 122-161 (700)
279 PRK08691 DNA polymerase III su 93.0 0.3 6.5E-06 55.2 8.1 42 121-177 13-57 (709)
280 PF05729 NACHT: NACHT domain 93.0 0.95 2.1E-05 40.5 10.2 108 161-273 3-129 (166)
281 PRK12726 flagellar biosynthesi 93.0 0.64 1.4E-05 49.1 10.0 114 157-282 205-336 (407)
282 PTZ00361 26 proteosome regulat 93.0 0.27 5.8E-06 52.9 7.4 19 157-175 216-234 (438)
283 PRK03992 proteasome-activating 93.0 0.32 7E-06 51.5 8.0 16 159-174 166-181 (389)
284 TIGR02688 conserved hypothetic 93.0 0.35 7.6E-06 51.6 8.1 69 153-246 204-273 (449)
285 COG4962 CpaF Flp pilus assembl 93.0 0.19 4.2E-06 51.9 6.0 63 139-211 153-216 (355)
286 PRK07994 DNA polymerase III su 93.0 1 2.2E-05 50.8 12.2 42 121-177 13-57 (647)
287 PRK06645 DNA polymerase III su 92.9 0.62 1.4E-05 51.1 10.2 42 121-177 18-62 (507)
288 TIGR00635 ruvB Holliday juncti 92.9 0.33 7.2E-06 49.1 7.6 16 159-174 31-46 (305)
289 COG0593 DnaA ATPase involved i 92.7 0.34 7.4E-06 51.5 7.6 107 158-281 113-225 (408)
290 KOG0745 Putative ATP-dependent 92.6 0.19 4E-06 53.4 5.4 79 156-246 224-304 (564)
291 PRK13342 recombination factor 92.6 0.49 1.1E-05 50.4 8.8 91 159-273 37-127 (413)
292 PRK00440 rfc replication facto 92.6 1.2 2.6E-05 44.9 11.3 100 160-271 40-139 (319)
293 COG0470 HolB ATPase involved i 92.5 0.41 9E-06 48.4 7.8 87 158-247 23-123 (325)
294 PTZ00112 origin recognition co 92.5 0.86 1.9E-05 52.8 10.7 28 232-260 868-895 (1164)
295 PRK11331 5-methylcytosine-spec 92.4 0.37 7.9E-06 51.9 7.5 33 143-175 179-211 (459)
296 TIGR02639 ClpA ATP-dependent C 92.4 1.7 3.7E-05 49.9 13.4 112 159-278 204-323 (731)
297 COG1444 Predicted P-loop ATPas 92.4 1 2.3E-05 51.2 11.3 128 133-275 204-357 (758)
298 COG1474 CDC6 Cdc6-related prot 92.4 0.72 1.6E-05 48.5 9.6 25 159-184 43-67 (366)
299 PF03796 DnaB_C: DnaB-like hel 92.4 0.85 1.8E-05 45.2 9.7 37 159-203 20-56 (259)
300 PF05707 Zot: Zonular occluden 92.4 0.2 4.3E-06 47.6 4.9 51 233-283 79-134 (193)
301 PRK14961 DNA polymerase III su 92.2 0.61 1.3E-05 48.9 8.8 23 160-183 40-62 (363)
302 PRK09111 DNA polymerase III su 92.2 1.2 2.6E-05 49.9 11.4 48 121-184 21-71 (598)
303 KOG0060 Long-chain acyl-CoA tr 92.1 0.21 4.6E-06 54.6 5.2 49 155-205 458-509 (659)
304 KOG1805 DNA replication helica 92.1 0.55 1.2E-05 54.2 8.6 79 120-211 650-729 (1100)
305 TIGR02525 plasmid_TraJ plasmid 92.1 0.39 8.4E-06 50.6 7.1 49 118-185 127-175 (372)
306 PRK09087 hypothetical protein; 92.1 0.49 1.1E-05 46.3 7.4 40 235-276 89-129 (226)
307 PRK10865 protein disaggregatio 91.9 1.2 2.6E-05 52.1 11.5 116 159-281 200-322 (857)
308 cd01131 PilT Pilus retraction 91.9 0.32 7E-06 46.4 5.8 23 161-184 4-26 (198)
309 PRK13764 ATPase; Provisional 91.9 0.31 6.8E-06 54.3 6.4 27 157-184 256-282 (602)
310 PRK14949 DNA polymerase III su 91.9 0.77 1.7E-05 53.3 9.6 45 232-278 118-162 (944)
311 PRK14723 flhF flagellar biosyn 91.8 0.75 1.6E-05 52.6 9.4 112 158-282 185-314 (767)
312 KOG2543 Origin recognition com 91.7 1.6 3.4E-05 45.9 10.8 121 145-278 11-162 (438)
313 CHL00095 clpC Clp protease ATP 91.7 1 2.2E-05 52.4 10.6 116 159-281 201-322 (821)
314 PRK13900 type IV secretion sys 91.6 0.47 1E-05 49.2 7.0 29 154-183 156-184 (332)
315 CHL00176 ftsH cell division pr 91.6 0.76 1.6E-05 51.9 9.1 71 158-246 216-288 (638)
316 PRK14963 DNA polymerase III su 91.5 0.74 1.6E-05 50.5 8.7 91 160-261 38-140 (504)
317 PRK14970 DNA polymerase III su 91.4 1.2 2.7E-05 46.4 10.0 26 159-185 40-65 (367)
318 PRK14964 DNA polymerase III su 91.3 1.1 2.3E-05 49.0 9.7 41 121-176 10-53 (491)
319 TIGR03346 chaperone_ClpB ATP-d 91.3 1 2.2E-05 52.6 10.1 115 159-280 195-316 (852)
320 PRK00080 ruvB Holliday junctio 91.2 0.42 9.2E-06 49.2 6.2 65 159-247 52-116 (328)
321 TIGR02524 dot_icm_DotB Dot/Icm 91.2 0.44 9.5E-06 50.0 6.4 28 157-185 133-160 (358)
322 PRK06871 DNA polymerase III su 91.2 2.1 4.6E-05 44.3 11.3 119 144-271 3-144 (325)
323 PRK14958 DNA polymerase III su 91.2 0.43 9.3E-06 52.4 6.5 39 232-271 118-156 (509)
324 PRK14721 flhF flagellar biosyn 91.2 1.4 3.1E-05 47.1 10.2 113 157-282 190-320 (420)
325 KOG0729 26S proteasome regulat 91.1 2 4.4E-05 43.1 10.4 112 119-248 172-285 (435)
326 PRK07993 DNA polymerase III su 91.1 2 4.3E-05 44.6 11.1 97 144-248 3-123 (334)
327 PRK13341 recombination factor 91.1 0.63 1.4E-05 53.2 7.9 38 233-275 109-146 (725)
328 KOG1131 RNA polymerase II tran 91.1 1.5 3.2E-05 47.6 10.1 48 140-187 13-64 (755)
329 PRK14960 DNA polymerase III su 91.1 0.54 1.2E-05 52.9 7.2 41 232-274 117-157 (702)
330 KOG0392 SNF2 family DNA-depend 91.1 3.1 6.7E-05 49.4 13.2 55 287-341 1394-1454(1549)
331 PRK14962 DNA polymerase III su 91.1 0.82 1.8E-05 49.7 8.5 17 160-176 38-54 (472)
332 PF07724 AAA_2: AAA domain (Cd 90.9 0.27 5.8E-06 46.0 4.0 78 160-247 5-82 (171)
333 PRK09112 DNA polymerase III su 90.8 1.3 2.8E-05 46.3 9.4 39 232-271 140-178 (351)
334 PF07728 AAA_5: AAA domain (dy 90.8 0.21 4.7E-06 44.2 3.2 15 160-174 1-15 (139)
335 KOG0741 AAA+-type ATPase [Post 90.8 2.4 5.2E-05 46.4 11.3 135 125-274 493-649 (744)
336 PRK13851 type IV secretion sys 90.8 0.32 6.8E-06 50.7 4.8 46 153-208 157-202 (344)
337 PRK08699 DNA polymerase III su 90.8 1.5 3.3E-05 45.3 9.7 119 145-273 3-151 (325)
338 COG1223 Predicted ATPase (AAA+ 90.6 1.3 2.7E-05 44.5 8.4 70 159-246 152-223 (368)
339 PRK14956 DNA polymerase III su 90.6 0.6 1.3E-05 50.7 6.8 18 160-177 42-59 (484)
340 PHA02244 ATPase-like protein 90.5 1.3 2.9E-05 46.5 9.1 21 153-173 114-134 (383)
341 cd01129 PulE-GspE PulE/GspE Th 90.5 0.52 1.1E-05 47.2 5.9 37 146-183 66-104 (264)
342 TIGR02858 spore_III_AA stage I 90.5 1.7 3.7E-05 43.8 9.6 22 152-173 102-126 (270)
343 PRK14959 DNA polymerase III su 90.5 2.2 4.7E-05 47.9 11.2 45 231-279 117-163 (624)
344 KOG0742 AAA+-type ATPase [Post 90.4 1.2 2.6E-05 47.1 8.5 17 159-175 385-401 (630)
345 CHL00195 ycf46 Ycf46; Provisio 90.4 1.2 2.6E-05 48.6 9.0 73 158-247 259-332 (489)
346 PRK12724 flagellar biosynthesi 90.3 2.1 4.6E-05 45.8 10.5 52 232-283 298-354 (432)
347 PRK14951 DNA polymerase III su 90.3 1.4 3.1E-05 49.5 9.7 42 121-177 13-57 (618)
348 KOG0741 AAA+-type ATPase [Post 90.2 0.33 7.1E-06 52.7 4.4 57 116-175 211-273 (744)
349 PRK06067 flagellar accessory p 90.2 2.1 4.6E-05 41.6 9.9 20 158-177 25-44 (234)
350 TIGR03499 FlhF flagellar biosy 90.1 1 2.2E-05 45.6 7.6 20 157-176 193-212 (282)
351 PRK10919 ATP-dependent DNA hel 90.1 0.51 1.1E-05 53.6 6.1 62 143-211 2-63 (672)
352 PF06745 KaiC: KaiC; InterPro 90.0 0.76 1.6E-05 44.4 6.4 27 158-184 19-45 (226)
353 PRK07940 DNA polymerase III su 89.9 1.5 3.3E-05 46.5 9.2 109 158-276 36-158 (394)
354 PRK06964 DNA polymerase III su 89.9 1.9 4E-05 45.0 9.6 124 145-271 3-169 (342)
355 PF05876 Terminase_GpA: Phage 89.9 0.23 4.9E-06 55.2 3.0 61 143-211 16-78 (557)
356 PRK05896 DNA polymerase III su 89.9 1.2 2.7E-05 49.6 8.6 25 159-184 39-63 (605)
357 PRK12900 secA preprotein trans 89.8 0.42 9.1E-06 55.7 5.1 56 143-209 138-193 (1025)
358 PRK10787 DNA-binding ATP-depen 89.8 7.4 0.00016 45.1 15.2 90 157-262 348-445 (784)
359 COG1222 RPT1 ATP-dependent 26S 89.7 1.9 4E-05 45.0 9.1 111 118-248 145-259 (406)
360 TIGR02788 VirB11 P-type DNA tr 89.5 2.3 5E-05 43.5 9.8 20 154-173 140-159 (308)
361 TIGR03345 VI_ClpV1 type VI sec 89.3 1.9 4.2E-05 50.3 10.1 124 148-278 192-328 (852)
362 PRK06090 DNA polymerase III su 89.3 3.9 8.5E-05 42.2 11.3 120 143-271 3-145 (319)
363 PHA00729 NTP-binding motif con 89.2 2 4.2E-05 42.2 8.5 115 160-289 19-143 (226)
364 PRK08533 flagellar accessory p 89.2 1.8 4E-05 42.3 8.5 39 156-203 22-60 (230)
365 KOG0990 Replication factor C, 89.2 1 2.3E-05 46.2 6.8 93 160-269 64-166 (360)
366 COG1702 PhoH Phosphate starvat 89.1 0.86 1.9E-05 47.1 6.3 45 141-185 126-170 (348)
367 KOG0734 AAA+-type ATPase conta 89.1 1.7 3.7E-05 47.5 8.7 116 159-292 338-466 (752)
368 PF03969 AFG1_ATPase: AFG1-lik 89.1 2.2 4.7E-05 44.9 9.5 47 231-278 125-172 (362)
369 TIGR00678 holB DNA polymerase 89.1 1.9 4.2E-05 40.3 8.3 26 159-185 15-40 (188)
370 PRK12899 secA preprotein trans 89.1 5.4 0.00012 46.7 13.2 57 286-342 615-682 (970)
371 TIGR01074 rep ATP-dependent DN 89.0 0.73 1.6E-05 52.1 6.3 61 144-211 2-62 (664)
372 PRK10436 hypothetical protein; 89.0 0.78 1.7E-05 49.8 6.2 39 145-184 203-243 (462)
373 KOG2035 Replication factor C, 88.9 2 4.3E-05 43.5 8.4 114 159-276 35-169 (351)
374 cd01126 TraG_VirD4 The TraG/Tr 88.9 0.2 4.4E-06 52.7 1.6 41 160-211 1-41 (384)
375 PF02534 T4SS-DNA_transf: Type 88.8 0.29 6.3E-06 52.8 2.8 41 159-210 45-85 (469)
376 PRK14969 DNA polymerase III su 88.8 1.7 3.6E-05 48.0 8.7 40 231-271 117-156 (527)
377 PRK14950 DNA polymerase III su 88.8 2.1 4.6E-05 47.8 9.6 25 159-184 39-63 (585)
378 TIGR02397 dnaX_nterm DNA polym 88.7 1.7 3.8E-05 44.7 8.4 82 159-247 37-131 (355)
379 KOG0733 Nuclear AAA ATPase (VC 88.6 2.1 4.6E-05 47.5 9.1 111 118-247 505-618 (802)
380 COG1219 ClpX ATP-dependent pro 88.4 0.45 9.8E-06 48.8 3.6 82 155-248 94-177 (408)
381 PRK00771 signal recognition pa 88.4 3.2 7E-05 44.7 10.3 52 233-284 175-227 (437)
382 PRK05342 clpX ATP-dependent pr 88.3 1 2.2E-05 48.1 6.5 19 157-175 107-125 (412)
383 PRK14952 DNA polymerase III su 88.3 2.1 4.5E-05 47.9 9.1 47 231-279 116-162 (584)
384 PRK14948 DNA polymerase III su 88.3 3.7 8.1E-05 46.2 11.2 48 121-184 13-63 (620)
385 KOG2028 ATPase related to the 88.1 1.1 2.4E-05 46.8 6.2 92 160-274 164-258 (554)
386 KOG2170 ATPase of the AAA+ sup 88.1 1.2 2.7E-05 45.3 6.4 50 234-284 179-235 (344)
387 PF14617 CMS1: U3-containing 9 88.0 0.74 1.6E-05 45.9 4.8 30 212-244 183-212 (252)
388 PRK11054 helD DNA helicase IV; 88.0 1.6 3.4E-05 49.7 8.1 63 142-211 195-257 (684)
389 PF12846 AAA_10: AAA-like doma 87.8 0.79 1.7E-05 45.4 5.1 42 159-209 2-43 (304)
390 TIGR01547 phage_term_2 phage t 87.7 0.76 1.6E-05 48.5 5.0 45 160-210 3-47 (396)
391 PLN00020 ribulose bisphosphate 87.7 0.77 1.7E-05 48.3 4.8 76 159-247 149-226 (413)
392 PF05673 DUF815: Protein of un 87.6 19 0.00042 35.8 14.4 46 328-373 182-228 (249)
393 PF02572 CobA_CobO_BtuR: ATP:c 87.6 6.2 0.00013 37.1 10.5 54 231-284 94-149 (172)
394 TIGR00064 ftsY signal recognit 87.5 5.5 0.00012 40.1 10.9 52 231-282 152-210 (272)
395 PF03266 NTPase_1: NTPase; In 87.5 0.79 1.7E-05 42.8 4.5 28 232-259 94-123 (168)
396 TIGR02538 type_IV_pilB type IV 87.5 0.72 1.6E-05 51.3 4.9 46 135-184 294-341 (564)
397 PRK11823 DNA repair protein Ra 87.5 1.9 4.1E-05 46.6 8.0 44 158-211 80-123 (446)
398 TIGR02785 addA_Gpos recombinat 87.4 1 2.2E-05 54.7 6.5 60 144-211 2-61 (1232)
399 PHA03311 helicase-primase subu 87.4 1.7 3.7E-05 49.2 7.6 39 159-211 72-110 (828)
400 PRK05298 excinuclease ABC subu 87.3 1.1 2.3E-05 50.9 6.2 58 143-212 12-74 (652)
401 TIGR01075 uvrD DNA helicase II 87.2 0.96 2.1E-05 51.7 5.9 63 142-211 3-65 (715)
402 KOG1133 Helicase of the DEAD s 87.2 0.83 1.8E-05 51.0 5.0 43 143-185 15-61 (821)
403 PRK12901 secA preprotein trans 87.1 2.1 4.5E-05 50.4 8.3 57 286-342 675-742 (1112)
404 TIGR03600 phage_DnaB phage rep 87.0 2.8 6.1E-05 44.7 8.9 44 158-210 194-241 (421)
405 KOG0740 AAA+-type ATPase [Post 86.9 2.3 4.9E-05 45.5 8.0 107 159-282 187-307 (428)
406 COG2109 BtuR ATP:corrinoid ade 86.9 10 0.00022 36.2 11.4 53 232-284 121-175 (198)
407 cd03239 ABC_SMC_head The struc 86.9 1.6 3.4E-05 41.0 6.2 41 232-272 115-156 (178)
408 PRK13897 type IV secretion sys 86.8 0.46 1E-05 53.2 2.9 41 159-210 159-199 (606)
409 cd03115 SRP The signal recogni 86.8 6.5 0.00014 36.1 10.2 49 233-281 82-131 (173)
410 PRK14965 DNA polymerase III su 86.8 3.8 8.3E-05 45.7 10.1 46 231-278 117-162 (576)
411 COG4555 NatA ABC-type Na+ tran 86.8 2.8 6E-05 40.7 7.6 53 232-284 150-202 (245)
412 PRK14957 DNA polymerase III su 86.6 3.1 6.7E-05 46.1 9.1 40 231-271 117-156 (546)
413 PRK05563 DNA polymerase III su 86.5 1.6 3.4E-05 48.6 6.9 42 121-177 13-57 (559)
414 COG0630 VirB11 Type IV secreto 86.5 1 2.2E-05 46.4 5.0 58 120-183 109-167 (312)
415 PRK04841 transcriptional regul 86.4 3.2 7E-05 48.3 9.7 42 234-275 122-163 (903)
416 PRK13531 regulatory ATPase Rav 86.4 1.6 3.5E-05 47.5 6.6 27 149-175 30-56 (498)
417 COG4185 Uncharacterized protei 86.4 0.71 1.5E-05 42.9 3.3 38 161-211 5-42 (187)
418 PRK10867 signal recognition pa 86.2 4.5 9.7E-05 43.6 9.9 53 232-284 182-235 (433)
419 PRK11773 uvrD DNA-dependent he 86.2 1.2 2.7E-05 51.0 6.0 63 142-211 8-70 (721)
420 PF00437 T2SE: Type II/IV secr 86.1 0.68 1.5E-05 46.1 3.4 45 155-208 124-168 (270)
421 cd03221 ABCF_EF-3 ABCF_EF-3 E 86.1 1.2 2.6E-05 40.1 4.8 98 157-273 25-125 (144)
422 PRK14955 DNA polymerase III su 86.0 4.7 0.0001 42.8 9.9 18 160-177 40-57 (397)
423 PF14516 AAA_35: AAA-like doma 85.9 7.4 0.00016 40.3 11.1 44 141-185 13-57 (331)
424 KOG0739 AAA+-type ATPase [Post 85.9 5.3 0.00011 40.9 9.5 196 118-341 127-345 (439)
425 cd01130 VirB11-like_ATPase Typ 85.8 1.1 2.4E-05 42.2 4.5 31 144-174 10-41 (186)
426 TIGR03877 thermo_KaiC_1 KaiC d 85.7 3.6 7.9E-05 40.2 8.3 36 158-202 21-56 (237)
427 TIGR03819 heli_sec_ATPase heli 85.7 1.7 3.6E-05 45.3 6.2 64 133-208 154-218 (340)
428 PRK13850 type IV secretion sys 85.6 0.57 1.2E-05 53.1 2.9 25 159-183 140-164 (670)
429 PRK06995 flhF flagellar biosyn 85.6 2.8 6E-05 45.7 8.0 20 158-177 256-275 (484)
430 KOG0391 SNF2 family DNA-depend 85.4 3.5 7.7E-05 48.8 8.9 105 159-273 635-774 (1958)
431 PHA00350 putative assembly pro 85.4 2.3 5E-05 45.2 7.1 24 161-184 4-28 (399)
432 TIGR01425 SRP54_euk signal rec 85.4 4.5 9.8E-05 43.4 9.4 63 232-294 181-247 (429)
433 PRK13880 conjugal transfer cou 85.2 0.47 1E-05 53.5 2.0 40 159-209 176-215 (636)
434 PRK10733 hflB ATP-dependent me 85.2 2.6 5.7E-05 47.7 7.9 16 159-174 186-201 (644)
435 PTZ00293 thymidine kinase; Pro 85.1 2.1 4.6E-05 41.5 6.1 72 158-245 4-89 (211)
436 PRK08506 replicative DNA helic 85.0 4.4 9.5E-05 44.1 9.3 25 159-184 193-217 (472)
437 PRK08451 DNA polymerase III su 85.0 2.2 4.8E-05 47.1 7.0 40 231-271 115-154 (535)
438 COG4604 CeuD ABC-type enteroch 84.8 1.9 4.2E-05 41.6 5.6 50 157-211 26-77 (252)
439 PF01637 Arch_ATPase: Archaeal 84.8 1 2.2E-05 42.7 3.8 16 158-173 20-35 (234)
440 cd01127 TrwB Bacterial conjuga 84.8 0.92 2E-05 48.4 3.8 51 152-211 36-86 (410)
441 PRK05595 replicative DNA helic 84.6 3.7 8E-05 44.3 8.4 50 144-203 185-238 (444)
442 TIGR02533 type_II_gspE general 84.5 1.9 4E-05 47.2 6.1 45 135-183 220-266 (486)
443 PRK08760 replicative DNA helic 84.5 4.1 8.8E-05 44.4 8.7 24 160-184 231-254 (476)
444 COG2909 MalT ATP-dependent tra 84.3 3 6.5E-05 47.9 7.7 42 234-275 130-171 (894)
445 PF10412 TrwB_AAD_bind: Type I 84.3 0.83 1.8E-05 48.3 3.2 54 154-216 11-64 (386)
446 PRK07399 DNA polymerase III su 84.3 5.7 0.00012 40.9 9.3 107 159-272 27-161 (314)
447 PRK12901 secA preprotein trans 84.2 1.2 2.6E-05 52.2 4.7 56 143-209 169-224 (1112)
448 COG3267 ExeA Type II secretory 84.1 4.4 9.6E-05 40.4 7.9 29 153-182 45-74 (269)
449 PRK07004 replicative DNA helic 84.1 4.4 9.5E-05 44.0 8.7 26 158-184 213-238 (460)
450 COG2874 FlaH Predicted ATPases 84.1 10 0.00022 37.0 10.1 139 159-312 29-206 (235)
451 PRK14954 DNA polymerase III su 84.0 10 0.00022 42.8 11.8 18 160-177 40-57 (620)
452 cd01121 Sms Sms (bacterial rad 83.9 3.9 8.4E-05 43.2 8.0 37 158-203 82-118 (372)
453 COG0464 SpoVK ATPases of the A 83.9 6.3 0.00014 42.9 10.0 115 113-248 231-350 (494)
454 cd03227 ABC_Class2 ABC-type Cl 83.7 2.4 5.3E-05 38.9 5.7 28 233-260 99-126 (162)
455 PRK13876 conjugal transfer cou 83.7 0.8 1.7E-05 51.8 3.0 25 159-183 145-169 (663)
456 PRK05748 replicative DNA helic 83.7 5.4 0.00012 43.0 9.2 25 159-184 204-228 (448)
457 TIGR00959 ffh signal recogniti 83.6 7.2 0.00016 41.9 10.0 53 232-284 181-234 (428)
458 PHA00012 I assembly protein 83.6 9.7 0.00021 39.5 10.4 53 232-284 80-137 (361)
459 TIGR03345 VI_ClpV1 type VI sec 83.6 4.5 9.7E-05 47.3 9.1 15 161-175 599-613 (852)
460 PF04665 Pox_A32: Poxvirus A32 83.2 1.5 3.1E-05 43.5 4.2 38 160-206 15-52 (241)
461 COG4152 ABC-type uncharacteriz 83.2 6 0.00013 39.5 8.3 54 231-284 146-199 (300)
462 TIGR00665 DnaB replicative DNA 83.2 5.3 0.00011 42.8 8.9 25 159-184 196-220 (434)
463 COG2255 RuvB Holliday junction 83.0 1.4 3E-05 44.6 4.0 63 160-246 54-116 (332)
464 cd03228 ABCC_MRP_Like The MRP 82.7 2.9 6.4E-05 38.5 5.9 41 231-272 112-152 (171)
465 PF13871 Helicase_C_4: Helicas 82.7 3.5 7.7E-05 41.7 6.8 71 285-355 59-144 (278)
466 COG4178 ABC-type uncharacteriz 82.6 5 0.00011 44.8 8.5 50 231-282 531-580 (604)
467 PRK05973 replicative DNA helic 82.5 2.3 5E-05 42.0 5.3 51 142-202 49-99 (237)
468 COG2804 PulE Type II secretory 82.4 2.4 5.1E-05 46.1 5.7 46 136-185 237-284 (500)
469 TIGR01073 pcrA ATP-dependent D 82.3 2.3 5E-05 48.7 6.1 63 142-211 3-65 (726)
470 KOG2228 Origin recognition com 81.9 7 0.00015 40.7 8.6 16 158-173 49-64 (408)
471 PRK06321 replicative DNA helic 81.8 7.1 0.00015 42.6 9.2 38 144-184 210-251 (472)
472 PHA03333 putative ATPase subun 81.7 18 0.00038 41.2 12.3 52 152-211 181-232 (752)
473 TIGR02767 TraG-Ti Ti-type conj 81.4 1 2.2E-05 50.6 2.7 41 159-210 212-252 (623)
474 PRK08840 replicative DNA helic 81.3 7.9 0.00017 42.1 9.4 25 159-184 218-242 (464)
475 PRK08058 DNA polymerase III su 81.3 12 0.00026 38.6 10.4 106 160-273 30-148 (329)
476 cd03230 ABC_DR_subfamily_A Thi 81.3 2.3 5E-05 39.3 4.7 49 231-279 111-159 (173)
477 PRK05636 replicative DNA helic 81.3 6.2 0.00013 43.4 8.6 45 159-211 265-313 (505)
478 PRK07414 cob(I)yrinic acid a,c 81.2 11 0.00024 35.7 9.1 52 232-283 114-167 (178)
479 KOG0730 AAA+-type ATPase [Post 81.1 8.4 0.00018 43.2 9.4 114 113-247 423-541 (693)
480 cd03222 ABC_RNaseL_inhibitor T 81.1 2.9 6.2E-05 39.4 5.2 49 231-279 87-136 (177)
481 COG5008 PilU Tfp pilus assembl 81.0 1.5 3.2E-05 44.1 3.3 45 118-182 105-150 (375)
482 cd00267 ABC_ATPase ABC (ATP-bi 80.8 2.4 5.2E-05 38.4 4.5 47 231-277 96-142 (157)
483 PF01443 Viral_helicase1: Vira 80.8 0.69 1.5E-05 44.5 0.9 13 161-173 1-13 (234)
484 cd03246 ABCC_Protease_Secretio 80.7 2.2 4.7E-05 39.5 4.3 42 231-272 112-153 (173)
485 KOG0732 AAA+-type ATPase conta 80.5 3.1 6.6E-05 49.1 6.1 138 120-274 261-414 (1080)
486 PRK06904 replicative DNA helic 80.5 11 0.00023 41.2 10.0 25 159-184 221-246 (472)
487 PHA03368 DNA packaging termina 80.5 5.3 0.00011 45.1 7.7 112 154-276 250-392 (738)
488 PRK13822 conjugal transfer cou 80.3 1.1 2.4E-05 50.5 2.5 41 159-210 225-265 (641)
489 cd00983 recA RecA is a bacter 80.3 4.7 0.0001 41.7 6.9 76 158-246 55-146 (325)
490 TIGR03880 KaiC_arch_3 KaiC dom 80.3 5.6 0.00012 38.3 7.1 17 158-174 16-32 (224)
491 COG1435 Tdk Thymidine kinase [ 80.1 8.1 0.00017 37.1 7.8 86 160-259 6-107 (201)
492 PF02456 Adeno_IVa2: Adenoviru 80.0 5 0.00011 41.2 6.7 40 161-207 90-129 (369)
493 TIGR00382 clpX endopeptidase C 80.0 2.9 6.3E-05 44.7 5.4 20 156-175 114-133 (413)
494 COG1373 Predicted ATPase (AAA+ 79.9 7.7 0.00017 41.3 8.6 142 144-326 22-164 (398)
495 cd03229 ABC_Class3 This class 79.8 1.3 2.8E-05 41.2 2.4 50 231-280 116-166 (178)
496 COG1132 MdlB ABC-type multidru 79.7 5.1 0.00011 44.4 7.5 39 231-269 481-519 (567)
497 PF12775 AAA_7: P-loop contain 79.6 1.1 2.4E-05 45.1 2.0 19 155-173 30-48 (272)
498 cd03280 ABC_MutS2 MutS2 homolo 79.4 19 0.00042 34.0 10.4 51 231-282 106-157 (200)
499 PLN03187 meiotic recombination 79.3 6.5 0.00014 41.1 7.6 41 160-203 128-168 (344)
500 COG1120 FepC ABC-type cobalami 79.3 4 8.7E-05 40.9 5.8 31 232-262 155-185 (258)
No 1
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-77 Score=653.60 Aligned_cols=464 Identities=45% Similarity=0.663 Sum_probs=401.6
Q ss_pred CCCCCCCchhHHhhccccccccCCCc--------------------ccccCccCCCC----CC-----CCcchHHHHHHH
Q 042373 11 VVQIEIDPLDAFMNDMECSFAEHPNN--------------------CFRLGRRLPAE----DS-----HSASDYELFMKR 61 (494)
Q Consensus 11 ~~~~e~d~ld~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~----~~-----d~~~~~~~~~~~ 61 (494)
..+++.||+|+||..+......+... .+..|..+... |. +++.+...+++.
T Consensus 223 ~~dd~~d~ld~~m~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~e~~~~~~D~~e~~~~~~~d~~~~~~~ 302 (997)
T KOG0334|consen 223 LVDDEEDPLDAFMEQMVGKVLAKFSNSSHSKAQVVEVSKDARKGLNPKLSGFVIEPGLVNGDNEEVELNGSFDNRNAAKN 302 (997)
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCCcccccccccchhhhccCCccccceeccCCcCCcchhhhhhccccchHHHHHH
Confidence 55788999999999887442211100 01234443321 11 111356667777
Q ss_pred HhhhhhccchhhhhcccchhcccccccccccchhhhhcCH----HHHhhcC-ceeccCCCCCCCCCcccCCCCHHHHHHH
Q 042373 62 AKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKILETF 136 (494)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~-i~v~g~~~P~pi~~f~~l~L~~~ll~~l 136 (494)
.+.+.++.+.. ++|+++.|.+|+||||.+.++++.|+. .||..+. |+|+|..+|+||++|.++|++..|+..+
T Consensus 303 ~~~~~~~~~~~--~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tl 380 (997)
T KOG0334|consen 303 MNLKAKKNLIQ--VDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETL 380 (997)
T ss_pred hccccccceee--cccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHH
Confidence 77777777777 999999999999999999999999988 7888888 9999999999999999999999999999
Q ss_pred HhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 137 SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 137 ~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
+++||.+|||||.+|||+||+|||||++|.||||||++|+||++.|+..+++...++ ||.+|||+||||||.||
T Consensus 381 kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd-GPi~li~aPtrela~QI~r~~~ 459 (997)
T KOG0334|consen 381 KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD-GPIALILAPTRELAMQIHREVR 459 (997)
T ss_pred HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC-CceEEEEcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888 99999999999999999
Q ss_pred ----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHH
Q 042373 212 ----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRI 257 (494)
Q Consensus 212 ----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~I 257 (494)
|||||++|+++.+..++.+|+++.|||+||||+|++|||.|++..|
T Consensus 460 kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~I 539 (997)
T KOG0334|consen 460 KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRI 539 (997)
T ss_pred HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchH
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------------------------
Q 042373 258 VQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------------------------- 284 (494)
Q Consensus 258 l~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------------------- 284 (494)
++++++.+|+++||||||..++.+++.
T Consensus 540 i~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiF 619 (997)
T KOG0334|consen 540 LQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIF 619 (997)
T ss_pred HhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEE
Confidence 999999999999999999999999987
Q ss_pred -----------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHh
Q 042373 285 -----------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323 (494)
Q Consensus 285 -----------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvh 323 (494)
++.+++||||++++||||++++.+|||||+|+++++|+|
T Consensus 620 v~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvh 699 (997)
T KOG0334|consen 620 VDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVH 699 (997)
T ss_pred EcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHH
Confidence 789999999999999999999999999999999999999
Q ss_pred hhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhcccccccCCc-cCCcccchhhHHH
Q 042373 324 HCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNLGLGQVHGTG-HGGVALNLMKRRI 399 (494)
Q Consensus 324 R~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~g~~~~~~~~ 399 (494)
|+|| +||+|.|++|+++.+..++.+|.++|+.+++++|..|+.|+..|..+.+.++...+++| |||+|+.|.+.++
T Consensus 700 R~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~~~~~~~~ 779 (997)
T KOG0334|consen 700 RVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKFDEVEE 779 (997)
T ss_pred HhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhhhcccccccccCcccCCcccccHHHH
Confidence 9999 77899999999999999999999999999999999999999999999999988887777 9999999998888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccccccccCCCC-CcchhhhHHHHHHHHHHhccCCCCCcchhhhhhccCCCCCCCCC
Q 042373 400 RRGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGG-DISHQDSIAKIATIAAASNSKASASTPSLISVAQLLPNGGPSIP 478 (494)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (494)
+.....++++.+.+|+.+...+++....-.+..+. ..+.+.-...+..+. +.++.|.+.++|++.+
T Consensus 780 ~~~~~~ke~q~~~~g~~~~d~e~d~~~~~~~~~~~~~~s~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 846 (997)
T KOG0334|consen 780 ELRQERKEAQRKDLGLKEGDNESDIEVDNSDKASQPRESIQNPTFLQVEAE-------------SKTQEKTLLLGGELNA 846 (997)
T ss_pred HHHHHHhhccccCcCCCCCCcccccccccchhhccccccccCccccccccc-------------ccchhhhhhccccccc
Confidence 88888899999999998877776655544444443 333333222222221 1177788888888888
Q ss_pred CCcccccccCCC
Q 042373 479 LPGVLGLSVPGG 490 (494)
Q Consensus 479 ~~~~~~~~~~~~ 490 (494)
.+....+.+||+
T Consensus 847 ~~~~~~~~~~~~ 858 (997)
T KOG0334|consen 847 ARPMVPYPVPGT 858 (997)
T ss_pred cccccccccccc
Confidence 888888888877
No 2
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-71 Score=563.50 Aligned_cols=324 Identities=38% Similarity=0.645 Sum_probs=298.6
Q ss_pred hhhhccchhhhhcccchhcccccccccccchhhhhcCH----HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhC
Q 042373 64 KKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKL 139 (494)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~ 139 (494)
|++.+.+++ ++|++|+|++|+|+||.++.+|..++. .+|..++++|.|...|+|+++|+++|+++.|+.++++.
T Consensus 164 kr~idpl~~--idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~ 241 (731)
T KOG0339|consen 164 KRQIDPLPP--IDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKS 241 (731)
T ss_pred cccCCCCCC--cchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhh
Confidence 455677777 999999999999999999999999887 89999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------
Q 042373 140 NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------- 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------- 211 (494)
.|++|||||++++|..++|||||++|.||||||.||++|++.|++.++.+.+++ +|++||+|||||||.||
T Consensus 242 Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~-gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 242 EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE-GPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC-CCeEEEEeccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999888777 99999999999999999
Q ss_pred -------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 212 -------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 212 -------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
||||||+|++.. +.++|++++||||||||+|++|||+++|+.|..+
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm---Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~h 397 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM---KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQH 397 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh---hcccceeeeEEEEechhhhhccccHHHHHHHHhh
Confidence 899999999987 4579999999999999999999999999999999
Q ss_pred hcCCCcEEEecCCCChHHHHHHHh--------------------------------------------------------
Q 042373 261 IRPDRQAVLFSPTFPPRVEILARK-------------------------------------------------------- 284 (494)
Q Consensus 261 l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------------------------- 284 (494)
++++||+|+|||||+..++.+++.
T Consensus 398 irpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTK 477 (731)
T KOG0339|consen 398 IRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTK 477 (731)
T ss_pred cCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEec
Confidence 999999999999999999999997
Q ss_pred --------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhc
Q 042373 285 --------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCC 326 (494)
Q Consensus 285 --------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~G 326 (494)
.+.++|||+||+++||+||+++..|||||+..+++.|+||+|
T Consensus 478 k~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrig 557 (731)
T KOG0339|consen 478 KADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIG 557 (731)
T ss_pred cCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhh
Confidence 567999999999999999999999999999999999999999
Q ss_pred c---CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHH--HHHHHH--HhcccccccCCccCCcccc
Q 042373 327 Q---SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVA--DSFIAK--VNLGLGQVHGTGHGGVALN 393 (494)
Q Consensus 327 R---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~--~~~~~~--~~~~~~~~~~~~~~g~g~~ 393 (494)
| +|.+|.+||++++.+..++..|++.|+.++|.||+.|..|+ ..|... +..|.++....|.||+|+.
T Consensus 558 rtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~~r~~~g~gk~~~~~~gglgyr 631 (731)
T KOG0339|consen 558 RTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRSSRFGRGGGKKGTGGGGGLGYR 631 (731)
T ss_pred hcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhhhhccCCCCCCCCCCCCCcccc
Confidence 9 55589999999999999999999999999999999997765 444443 3444444444566677764
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-66 Score=522.04 Aligned_cols=297 Identities=35% Similarity=0.579 Sum_probs=278.5
Q ss_pred hcccchhcccccccccccchhhhhcCH----HHHhhcC-ceecc------CCCCCCCCCccc-CCCCHHHHHHHHhCCCC
Q 042373 75 KSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIRE------KCAPKPIKTWRQ-TGLTTKILETFSKLNHE 142 (494)
Q Consensus 75 ~~~~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~-i~v~g------~~~P~pi~~f~~-l~L~~~ll~~l~~~g~~ 142 (494)
...+|..++|++||||.++.+.++||+ ++|++.. |.+.. ..+|+|..+|++ |.-.+++++.+++.||.
T Consensus 162 e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFq 241 (629)
T KOG0336|consen 162 EKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQ 241 (629)
T ss_pred hhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCC
Confidence 556788999999999999999999998 6777655 76643 358999999987 57889999999999999
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
+|||||.|+||.+|+|.|+|++|+||+|||++||+|-+.|+..++.......+|.+|+++|||||+.|+
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng 321 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNG 321 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcC
Confidence 999999999999999999999999999999999999999999887666666799999999999999998
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCC
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 264 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~ 264 (494)
+|||||.++... +.++|..|+||||||||+|+||||+++|++|+-.++++
T Consensus 322 ~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~---n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPD 398 (629)
T KOG0336|consen 322 LKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD---NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPD 398 (629)
T ss_pred cceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc---CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCc
Confidence 899999999887 46799999999999999999999999999999999999
Q ss_pred CcEEEecCCCChHHHHHHHh------------------------------------------------------------
Q 042373 265 RQAVLFSPTFPPRVEILARK------------------------------------------------------------ 284 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------------ 284 (494)
||++|.|||||+.|..|+.+
T Consensus 399 RqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~A 478 (629)
T KOG0336|consen 399 RQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMA 478 (629)
T ss_pred ceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhh
Confidence 99999999999999999987
Q ss_pred ----------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---
Q 042373 285 ----------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ--- 327 (494)
Q Consensus 285 ----------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR--- 327 (494)
+|.++||||||+++||||+++|.||+|||+|.+++.||||+||
T Consensus 479 D~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGR 558 (629)
T KOG0336|consen 479 DHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGR 558 (629)
T ss_pred hhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccccc
Confidence 8999999999999999999999999999999999999999988
Q ss_pred CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 042373 328 SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADSFIAK 374 (494)
Q Consensus 328 aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~ 374 (494)
+||+|.+++|++.++...+..|.++|+.++|+||++|..+|++|..+
T Consensus 559 aGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~ 605 (629)
T KOG0336|consen 559 AGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLK 605 (629)
T ss_pred CCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999999999999999876
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-63 Score=523.14 Aligned_cols=287 Identities=42% Similarity=0.681 Sum_probs=255.5
Q ss_pred hhcccccccccccchhhhhcCH----HHHhhcCceeccCC-CCCCCCCcc-----------------------------c
Q 042373 80 IDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKC-APKPIKTWR-----------------------------Q 125 (494)
Q Consensus 80 ~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~i~v~g~~-~P~pi~~f~-----------------------------~ 125 (494)
.++.++.++||........+.. .+++...+.+++.+ +|.|+.+|+ .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4677788888887766554433 55666778887766 787776654 4
Q ss_pred CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHc-CCCCCCCCCCCeEEEEccc
Q 042373 126 TGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE-QPPVVPGDDSPVGLVMAPT 204 (494)
Q Consensus 126 l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~-~~~~~~~~~~p~aLIl~PT 204 (494)
++|++.++..|+..||+.|||||+++||.+|+|||++++|.|||||||+|+||++.|+.. +.....+ ++|++|||+||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~-~~P~vLVL~PT 174 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRG-DGPIVLVLAPT 174 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCC-CCCeEEEEcCc
Confidence 556677777788999999999999999999999999999999999999999999999998 4443333 49999999999
Q ss_pred hhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh
Q 042373 205 GELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 205 reLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m 245 (494)
||||.|+ +|||||+|++..+ .++|++|+|+||||||+|
T Consensus 175 RELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g---~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 175 RELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG---SLNLSRVTYLVLDEADRM 251 (519)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC---CccccceeEEEeccHHhh
Confidence 9999998 8999999999985 458999999999999999
Q ss_pred cccCChhHHHHHHHhh-cCCCcEEEecCCCChHHHHHHHh----------------------------------------
Q 042373 246 FDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRVEILARK---------------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------------- 284 (494)
++|||+++|+.|+.++ ++.+|+++||||||.++..++..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 67789999999999999999987
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
+|++.||||||||+||||||+|+
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 89999999999999999999999
Q ss_pred EEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 042373 308 LVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADS 370 (494)
Q Consensus 308 ~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~ 370 (494)
+|||||+|.+.++||||+||.|| +|.+++|++..+...+..+.+.++..+|.+|+.|..++..
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 99999999999999999999655 9999999999999999999999999999999999888654
No 5
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.4e-63 Score=496.92 Aligned_cols=317 Identities=33% Similarity=0.541 Sum_probs=289.2
Q ss_pred cchhcccccccccccchhhhhcCH----HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHH
Q 042373 78 IKIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASA 153 (494)
Q Consensus 78 ~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip 153 (494)
..|.|..--+..|.++..+.+||+ ..|+.+.|.|.|.++|+||.+|.++.++..+++.|++.|+..|||||.|.+|
T Consensus 123 kGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlP 202 (610)
T KOG0341|consen 123 KGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLP 202 (610)
T ss_pred CCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcc
Confidence 467899999999999999999998 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCC---CCCCCCCCCeEEEEccchhHHHhh-------------------
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQP---PVVPGDDSPVGLVMAPTGELVRQQ------------------- 211 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l~~~~---~~~~~~~~p~aLIl~PTreLa~Qi------------------- 211 (494)
.+++|||+|++|-||||||+.|+||++...+.+. +...++ ||.+|||||+||||.|+
T Consensus 203 vvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E-GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~l 281 (610)
T KOG0341|consen 203 VVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE-GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPEL 281 (610)
T ss_pred eEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC-CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 9999999999999999999999999999887654 333344 99999999999999997
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCC
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR 265 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~ 265 (494)
+|||||.|+|.+ +.++|.-|+||++||||||+||||++.|+.|+.+++..|
T Consensus 282 Rs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K---K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR 358 (610)
T KOG0341|consen 282 RSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK---KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR 358 (610)
T ss_pred hhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH---hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh
Confidence 799999999997 467899999999999999999999999999999999999
Q ss_pred cEEEecCCCChHHHHHHHh-------------------------------------------------------------
Q 042373 266 QAVLFSPTFPPRVEILARK------------------------------------------------------------- 284 (494)
Q Consensus 266 Q~ilfSAT~~~~v~~l~~~------------------------------------------------------------- 284 (494)
|+++||||||..++.+++.
T Consensus 359 QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~Ih 438 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIH 438 (610)
T ss_pred heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHH
Confidence 9999999999999999997
Q ss_pred ------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCc
Q 042373 285 ------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLK 331 (494)
Q Consensus 285 ------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~ 331 (494)
.|+-+|||||||++.|||+|++.||||||+|..++.||||+|| .|++
T Consensus 439 EYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~ 518 (610)
T KOG0341|consen 439 EYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKT 518 (610)
T ss_pred HHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCc
Confidence 7899999999999999999999999999999999999999999 5568
Q ss_pred ceEEEEeccc-CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhcccccccCCcc-CCcccchhhHH
Q 042373 332 SCAFRFISEE-NAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNLGLGQVHGTGH-GGVALNLMKRR 398 (494)
Q Consensus 332 G~aitfv~~~-~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~g~~~~~~~ 398 (494)
|.+.||++.+ +...+-++..+|...+|.+|+.|..++.......-.+.+..+||.| ||.|+....+.
T Consensus 519 GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~~~~a~~~~~kGCayCgGLGHRItdCP 587 (610)
T KOG0341|consen 519 GIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEEETIADAGGEKGCAYCGGLGHRITDCP 587 (610)
T ss_pred ceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccccccccCCCccccccccCCCcccccCc
Confidence 8999999987 6778899999999999999999999987666543344455567766 89999887654
No 6
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2e-60 Score=515.69 Aligned_cols=351 Identities=28% Similarity=0.407 Sum_probs=306.2
Q ss_pred CCCCCCCchhHHhhccccccccCCC--cccccCccCCCCCCCCcchHHHHHHHHhhhhhccchhhhhcccchhc-ccccc
Q 042373 11 VVQIEIDPLDAFMNDMECSFAEHPN--NCFRLGRRLPAEDSHSASDYELFMKRAKKKKRDKNREIIKSKIKIDY-QQLRK 87 (494)
Q Consensus 11 ~~~~e~d~ld~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~k 87 (494)
..++++|+...|-.+.++.+..+.. .|.++|+++||++|||-+.-++..++.....+ .-.. ++|++.+| +++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~ 82 (518)
T PLN00206 6 CNPHEDDVVKERSIEQREALPGEPKCVVCGRYGEYICDETDDDICSLECKQALLRRVAK-SRVA--VGAPKPKRLPATDE 82 (518)
T ss_pred CCcccchhhhhhhHHhcCCCCCCceEEEecCccceeccCCCCccccHHHHHHHHHHHhh-ccCC--cCCCchhhcCCcCC
Confidence 4456677888888777776655443 47999999999999999988888777754322 2222 67777776 78899
Q ss_pred cccccchhhhh-cCH----HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEE
Q 042373 88 NFYTQAREITR-MSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162 (494)
Q Consensus 88 ~~~~~~~~~~~-~s~----~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi 162 (494)
+||....+... ++. .+|+.++|.+.|.++|.|+.+|++++|++.+++.|.++||..|||+|.++||.+++|+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dvi 162 (518)
T PLN00206 83 CFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLL 162 (518)
T ss_pred cCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEE
Confidence 99998777644 555 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCchhhhHHHHHHHHHcCCCCC-CCCCCCeEEEEccchhHHHhh------------------------------
Q 042373 163 AITETGSGKTLAFLLPMLRHIWEQPPVV-PGDDSPVGLVMAPTGELVRQQ------------------------------ 211 (494)
Q Consensus 163 ~~a~TGSGKTlafllpil~~l~~~~~~~-~~~~~p~aLIl~PTreLa~Qi------------------------------ 211 (494)
++||||||||++|++|++.++....... ....++++|||+||||||.|+
T Consensus 163 v~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~ 242 (518)
T PLN00206 163 VSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYR 242 (518)
T ss_pred EEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHH
Confidence 9999999999999999999987532211 122479999999999999986
Q ss_pred ---------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 212 ---------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 212 ---------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
+||++|.+++.+. .+.++++++|||||||+|+++||++++..|+..+ +.+|+++||||+++.++.++
T Consensus 243 l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~ 318 (518)
T PLN00206 243 IQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFA 318 (518)
T ss_pred hcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHH
Confidence 7999999999875 4579999999999999999999999999999988 57899999999999998877
Q ss_pred Hh------------------------------------------------------------------------------
Q 042373 283 RK------------------------------------------------------------------------------ 284 (494)
Q Consensus 283 ~~------------------------------------------------------------------------------ 284 (494)
..
T Consensus 319 ~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~ 398 (518)
T PLN00206 319 SSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSI 398 (518)
T ss_pred HHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEe
Confidence 65
Q ss_pred -----------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHH
Q 042373 285 -----------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAI 344 (494)
Q Consensus 285 -----------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~ 344 (494)
.|+++|||||++++||||+|+|++|||||+|.++.+|+||+||+|| .|.+++|+++++..
T Consensus 399 Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 399 HGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred eCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 7899999999999999999999999999999999999999999666 78899999999999
Q ss_pred HHHHHHHHHHhccCcchHHHHHHH
Q 042373 345 YATDLVKAFELSELVVRDDLKAVA 368 (494)
Q Consensus 345 ~~~~i~~~l~~~~~~vp~~l~~~~ 368 (494)
.+..+.+.|+.+++.+|++|..+.
T Consensus 479 ~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 479 LFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred HHHHHHHHHHHcCCCCCHHHHhCh
Confidence 999999999999999999997765
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.1e-60 Score=513.72 Aligned_cols=317 Identities=41% Similarity=0.638 Sum_probs=281.9
Q ss_pred ccchhhhhcccchhcccccccccccchhhhhcCH----HHHhhcCcee-ccCCCCCCCCCcccCCCCHHHHHHHHhCCCC
Q 042373 68 DKNREIIKSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKI-REKCAPKPIKTWRQTGLTTKILETFSKLNHE 142 (494)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~i~v-~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~ 142 (494)
+.+.. ++|+..++.+|+|+||.++..+..++. .+++..+|.+ .|.++|+|+.+|++++|++.|++.|.++||.
T Consensus 74 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~ 151 (545)
T PTZ00110 74 KRLQP--IDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFT 151 (545)
T ss_pred cccCC--CCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCC
Confidence 45556 888888999999999999999998888 6788888876 7999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
+|||||.++||.+++|+|+|++||||||||++|+||++.++..++....+ .+|++|||+||||||.|+
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~-~gp~~LIL~PTreLa~Qi~~~~~~~~~~~ 230 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYG-DGPIVLVLAPTRELAEQIREQCNKFGASS 230 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCC-CCcEEEEECChHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999876543333 389999999999999997
Q ss_pred ----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC
Q 042373 212 ----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP 263 (494)
Q Consensus 212 ----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~ 263 (494)
+||++|++++..+ ..+|+++++|||||||+|++++|.+++..|+..+++
T Consensus 231 ~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~ 307 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 307 (545)
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCC
Confidence 7999999999864 457999999999999999999999999999999999
Q ss_pred CCcEEEecCCCChHHHHHHHh-----------------------------------------------------------
Q 042373 264 DRQAVLFSPTFPPRVEILARK----------------------------------------------------------- 284 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~~----------------------------------------------------------- 284 (494)
++|+++||||+|..++.+++.
T Consensus 308 ~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~ 387 (545)
T PTZ00110 308 DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETK 387 (545)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecCh
Confidence 999999999999998877654
Q ss_pred -------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc
Q 042373 285 -------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ 327 (494)
Q Consensus 285 -------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR 327 (494)
.|.++|||||++++|||||++|++|||||+|.++++|+||+||
T Consensus 388 ~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGR 467 (545)
T PTZ00110 388 KGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGR 467 (545)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999
Q ss_pred CC---CcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhcccccccCCccCCcccch
Q 042373 328 SW---LKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNLGLGQVHGTGHGGVALNL 394 (494)
Q Consensus 328 aG---r~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 394 (494)
+| +.|.|++|+++++...+..|.+.|+.++|+||++|.+++.... .++.....+++++.+..+
T Consensus 468 tGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~ 533 (545)
T PTZ00110 468 TGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS----NGTERRRWGGYGRFSNNV 533 (545)
T ss_pred cccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc----CCcccccccCCCCCCCCC
Confidence 55 4789999999999999999999999999999999999976432 233333445555544443
No 8
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-58 Score=462.59 Aligned_cols=246 Identities=30% Similarity=0.508 Sum_probs=226.5
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+|.++|+++.++++++..||..||+||+++||.++.|+|||+.|.||||||.+|+||++++++.++. .+.+|
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~------~~~~l 133 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK------LFFAL 133 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC------CceEE
Confidence 578999999999999999999999999999999999999999999999999999999999999998654 58999
Q ss_pred EEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 200 VMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 200 Il~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
||+||||||.|| +|||||++++.+. +.++|.+++|+|+|
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T--kgf~le~lk~LVlD 211 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT--KGFSLEQLKFLVLD 211 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc--cCccHHHhHHHhhc
Confidence 999999999998 8999999999965 34789999999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
|||++++|.|.+.+.+|++.+|..+|+++||||||..+.++.+.
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH
Confidence 99999999999999999999999999999999999999998875
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.|.++|||||||++||||||.|++
T Consensus 292 V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 292 VYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 799999999999999999999999
Q ss_pred EEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCc--chHHH-HHHHHHHHH
Q 042373 309 VINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELV--VRDDL-KAVADSFIA 373 (494)
Q Consensus 309 VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~--vp~~l-~~~~~~~~~ 373 (494)
|||||+|.+..+||||+|| +||.|.+|+||+..|...+..|+..+...... ++.+. ..+.+++.+
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l~erv~e 442 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEVMSLNERVAE 442 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHH
Confidence 9999999999999999999 89999999999999999999999999876644 55433 344444433
No 9
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-56 Score=458.89 Aligned_cols=229 Identities=32% Similarity=0.491 Sum_probs=216.9
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+|.+++|+.+|++++..+||..|||||..+||..+.|+|+++||-||||||.||+||+|.+++..+.... ..++|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~---~TRVL 256 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVA---ATRVL 256 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCc---ceeEE
Confidence 368999999999999999999999999999999999999999999999999999999999999998775322 56899
Q ss_pred EEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 200 VMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 200 Il~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
||||||||+.|+ +|||||+|+|.+.. .++|++|.++|+|
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~--sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP--SFNLDSIEVLVLD 334 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC--CccccceeEEEec
Confidence 999999999998 89999999998764 4789999999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
||||||+.||.+++..|++.++..||++||||||+.+|..|+.-
T Consensus 335 EADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRe 414 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDRE 414 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccH
Confidence 99999999999999999999999999999999999999999875
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.++++||||||+++|||||++
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 789999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHH
Q 042373 306 LELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAF 353 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l 353 (494)
|..||||++|.+++.|+||+|| |||.|.+++|+.+.+...++.|.+.-
T Consensus 495 V~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 495 VQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999 99999999999999999999999874
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.2e-56 Score=461.52 Aligned_cols=273 Identities=34% Similarity=0.600 Sum_probs=248.9
Q ss_pred hhhhhcCH----HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCC
Q 042373 94 REITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGS 169 (494)
Q Consensus 94 ~~~~~~s~----~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGS 169 (494)
+.+..|++ -|+..+.|.++|..+|.|+.+|++.+|+.++++.+.+.||..|||||.++||..++.+|+|++|.|||
T Consensus 214 k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgs 293 (673)
T KOG0333|consen 214 KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGS 293 (673)
T ss_pred hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccC
Confidence 45667776 67788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHcCCCCCC---CCCCCeEEEEccchhHHHhh-----------------------------------
Q 042373 170 GKTLAFLLPMLRHIWEQPPVVP---GDDSPVGLVMAPTGELVRQQ----------------------------------- 211 (494)
Q Consensus 170 GKTlafllpil~~l~~~~~~~~---~~~~p~aLIl~PTreLa~Qi----------------------------------- 211 (494)
|||+||++|++..|...++... ...||.++||+|||||++||
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gc 373 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGC 373 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccc
Confidence 9999999999999988775543 33599999999999999998
Q ss_pred ----hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC------------------------
Q 042373 212 ----VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP------------------------ 263 (494)
Q Consensus 212 ----~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~------------------------ 263 (494)
+|||||+|.|.+ +.+-|++|.|||+||||+|+||||++++..|+.++|.
T Consensus 374 eiviatPgrLid~Len---r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 374 EIVIATPGRLIDSLEN---RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred eeeecCchHHHHHHHH---HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 799999999997 4668999999999999999999999999999998853
Q ss_pred -CCcEEEecCCCChHHHHHHHh----------------------------------------------------------
Q 042373 264 -DRQAVLFSPTFPPRVEILARK---------------------------------------------------------- 284 (494)
Q Consensus 264 -~~Q~ilfSAT~~~~v~~l~~~---------------------------------------------------------- 284 (494)
-+|+++||||+|+.++.+++.
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~ 530 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGA 530 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhH
Confidence 179999999999999999997
Q ss_pred ----------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---
Q 042373 285 ----------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ--- 327 (494)
Q Consensus 285 ----------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR--- 327 (494)
.|..+||||||+++||||||+|++|||||++.++++|+|||||
T Consensus 531 d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgR 610 (673)
T KOG0333|consen 531 DALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGR 610 (673)
T ss_pred HHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccc
Confidence 7899999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEecccCHHHHHHHHHHHH-hccCcchHHHHHHHH
Q 042373 328 SWLKSCAFRFISEENAIYATDLVKAFE-LSELVVRDDLKAVAD 369 (494)
Q Consensus 328 aGr~G~aitfv~~~~~~~~~~i~~~l~-~~~~~vp~~l~~~~~ 369 (494)
||+.|++++|+++.+...+++|...|. -....+|++|....+
T Consensus 611 AGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~ 653 (673)
T KOG0333|consen 611 AGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPD 653 (673)
T ss_pred cccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChh
Confidence 777899999999999999999999887 445667877755433
No 11
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-55 Score=454.92 Aligned_cols=257 Identities=36% Similarity=0.547 Sum_probs=239.0
Q ss_pred ceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCC
Q 042373 109 LKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPP 188 (494)
Q Consensus 109 i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~ 188 (494)
+++.|.++|.++.+|.+..+.+.++.+++..||..|||+|+.+||.+..|+|+++||+||||||.||++|++.+++...+
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCC----CCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcC
Q 042373 189 VVP----GDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNG 225 (494)
Q Consensus 189 ~~~----~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~ 225 (494)
... +...|.+|||+||||||.|+ +|||||.+++..+
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g- 220 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG- 220 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-
Confidence 322 11369999999999999998 8999999999985
Q ss_pred cceecccceEEEEEcccchhcc-cCChhHHHHHHHhhc----CCCcEEEecCCCChHHHHHHHh----------------
Q 042373 226 VKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIR----PDRQAVLFSPTFPPRVEILARK---------------- 284 (494)
Q Consensus 226 ~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~----~~~Q~ilfSAT~~~~v~~l~~~---------------- 284 (494)
.+.|..++||||||||+|+| |||.++|++|+.+.. ..+|++|||||||..+..++..
T Consensus 221 --~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 221 --KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS 298 (482)
T ss_pred --eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc
Confidence 56899999999999999999 999999999999885 3799999999999999887765
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 299 ~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 299 TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence
Q ss_pred ------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHh
Q 042373 285 ------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 285 ------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
.|.+++||||+|++|||||++|+||||||+|.++.+|+||||| +|+.|.+++|++..+......|.++|..
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999 5558899999999999999999999999
Q ss_pred ccCcchHHHHHHH
Q 042373 356 SELVVRDDLKAVA 368 (494)
Q Consensus 356 ~~~~vp~~l~~~~ 368 (494)
++|.+|+||.+++
T Consensus 459 a~q~vP~wl~~~~ 471 (482)
T KOG0335|consen 459 ANQEVPQWLSELS 471 (482)
T ss_pred hcccCcHHHHhhh
Confidence 9999999998854
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-53 Score=455.01 Aligned_cols=235 Identities=38% Similarity=0.600 Sum_probs=216.0
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++++|++.++++|.++||..|||||.++||.++.|+|++++|+||||||+||++|+++++.... ... .+.+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~---~~~-~~~aLi 104 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV---ERK-YVSALI 104 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc---ccC-CCceEE
Confidence 7899999999999999999999999999999999999999999999999999999999999976431 111 122999
Q ss_pred EccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 201 MAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 201 l~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
|+||||||.|+ +|||||+|++..+ .+++++++++|+|
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlD 181 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLD 181 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEec
Confidence 99999999998 8999999999985 4689999999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
|||+|++|||.+++..|+..++.++|+++||||+|..+..+++.
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~ 261 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKL 261 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999988887
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|.++||||||+++|||||++
T Consensus 262 ~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 262 ELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 799999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEeccc-CHHHHHHHHHHHHhc---cCcchH
Q 042373 306 LELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEE-NAIYATDLVKAFELS---ELVVRD 362 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~-~~~~~~~i~~~l~~~---~~~vp~ 362 (494)
|++|||||+|.+.++||||+|| +|+.|.+++|+++. +...+..+++.+... ...+|.
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~ 405 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPL 405 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCc
Confidence 9999999999999999999999 67799999999986 899999999998765 345554
No 13
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-52 Score=413.06 Aligned_cols=236 Identities=31% Similarity=0.443 Sum_probs=217.0
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
....|+.|||++++.+.|+.+|+.+|||||..|||.||.|+|+|++|.||||||++|.+|++++|...+- |-.+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~------giFa 78 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY------GIFA 78 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC------cceE
Confidence 3578999999999999999999999999999999999999999999999999999999999999977552 7899
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCc-ceecccceEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGV-KITNLTRVTYLV 238 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~-~~~~l~~l~~lV 238 (494)
||++||||||.|+ +||||+.+++..+.. ....+++++|+|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 9999999999998 799999999987522 234589999999
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
+||||+|++..|.+.++-|++.+|..||+++||||++..+..+...
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 9999999999999999999999999999999999999888776553
Q ss_pred ---------------------------------------------------------------cCCccceeeccccccCC
Q 042373 285 ---------------------------------------------------------------TNVCNLSIANSVRARGL 301 (494)
Q Consensus 285 ---------------------------------------------------------------~g~~~ILVaTdv~~rGl 301 (494)
.+..+|||||||++|||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 78999999999999999
Q ss_pred CCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCcc
Q 042373 302 DEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELVV 360 (494)
Q Consensus 302 Di~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~v 360 (494)
|||.|++|||||+|.++.+||||+|| |||.|.+|+|+++.|...+..|++-+...-.+.
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~ 380 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEY 380 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999 999999999999999999999998877554443
No 14
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-51 Score=414.21 Aligned_cols=227 Identities=35% Similarity=0.543 Sum_probs=204.2
Q ss_pred CCcccCC--CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 121 KTWRQTG--LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 121 ~~f~~l~--L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.+|++++ |+++|++++..+||...||+|..+||.++.++||++.|+||||||+||++|+++.++.+....+.. ...+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vga 82 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGA 82 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ceeE
Confidence 5688776 559999999999999999999999999999999999999999999999999999997654322221 3569
Q ss_pred EEEccchhHHHhh-----------------------------------------hhhhHHHHHHHhcCcceecccceEEE
Q 042373 199 LVMAPTGELVRQQ-----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 199 LIl~PTreLa~Qi-----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
|||+||||||.|| +|||||.|++.+... .++++++.+|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe~L 161 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLEIL 161 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccceE
Confidence 9999999999999 899999999987543 4568899999
Q ss_pred EEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------------
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------------- 284 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------------- 284 (494)
|+||||++++|||..+++.|+..+|++|+|-|||||...++..|++.
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e 241 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE 241 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH
Confidence 99999999999999999999999999999999999999999999886
Q ss_pred ---------------------------------------------------------------cCCccceeeccccccCC
Q 042373 285 ---------------------------------------------------------------TNVCNLSIANSVRARGL 301 (494)
Q Consensus 285 ---------------------------------------------------------------~g~~~ILVaTdv~~rGl 301 (494)
.....+|+||||++|||
T Consensus 242 K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 242 KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 34667999999999999
Q ss_pred CCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHH
Q 042373 302 DEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDL 349 (494)
Q Consensus 302 Di~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i 349 (494)
|||+|++||+||+|.++..|+||+|| +||.|.||+|+.+++..|...+
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 99999999999999999999999999 7889999999999877665543
No 15
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.4e-50 Score=413.36 Aligned_cols=228 Identities=30% Similarity=0.467 Sum_probs=211.1
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
...|+++.|++.++++|+++||+++|++|+.+||.++.|+|+++.|.||||||+||+||.++.++..+.... ++..+|
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--~~~~vl 158 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--NGTGVL 158 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC--CCeeEE
Confidence 456889999999999999999999999999999999999999999999999999999999999998765433 377899
Q ss_pred EEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 200 VMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 200 Il~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||||||||.|+ +|||||.|+|.+... +-+++++++|+
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvl 236 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVL 236 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEe
Confidence 999999999998 899999999998754 45678899999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||+++++||+..|+.|+..++..+|+++||||.|++|+.+++-
T Consensus 237 DEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~ 316 (543)
T KOG0342|consen 237 DEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR 316 (543)
T ss_pred ecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch
Confidence 999999999999999999999999999999999999999999985
Q ss_pred -------------------------------------------------------------cCCccceeeccccccCCCC
Q 042373 285 -------------------------------------------------------------TNVCNLSIANSVRARGLDE 303 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVaTdv~~rGlDi 303 (494)
..+.-|||||||++||+|+
T Consensus 317 f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 317 FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI 396 (543)
T ss_pred HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC
Confidence 4566699999999999999
Q ss_pred CCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHH
Q 042373 304 KELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 304 ~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~ 351 (494)
|+|++||.||+|.+.++||||+|| .|..|.++.|+.+++..+++.|.+
T Consensus 397 P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 397 PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 999999999999999999999999 455889999999999999998884
No 16
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-51 Score=391.71 Aligned_cols=241 Identities=30% Similarity=0.454 Sum_probs=224.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
--.++.+|+++||.+.+++.+...||++|+.||+.|||.|+.|||||++|+.|+|||.+|.+.+++.+.-. ...
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~------~r~ 95 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS------VRE 95 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc------cce
Confidence 34578999999999999999999999999999999999999999999999999999999999999876432 225
Q ss_pred CeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 196 PVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++|||+||||||.|+ +||||+.+++.++. +..+.+++
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkm 172 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKM 172 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeE
Confidence 7899999999999998 79999999999854 46789999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh--------------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK-------------------------------- 284 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------- 284 (494)
+||||||.|++.||..|+..|++.+|++.|++++|||+|.++.+...+
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW 252 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh
Confidence 999999999999999999999999999999999999999999988876
Q ss_pred -------------------------------------------------------------cCCccceeeccccccCCCC
Q 042373 285 -------------------------------------------------------------TNVCNLSIANSVRARGLDE 303 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVaTdv~~rGlDi 303 (494)
+|+.+|||+|||-+||||+
T Consensus 253 KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 253 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 7999999999999999999
Q ss_pred CCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHH
Q 042373 304 KELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLK 365 (494)
Q Consensus 304 ~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~ 365 (494)
+.|++|||||+|++.+.|+||+|| .||+|.+|.|+..++.+.+++|++++.....+.|..+.
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nva 397 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVA 397 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhh
Confidence 999999999999999999999999 66799999999999999999999999998888886643
No 17
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-50 Score=412.67 Aligned_cols=235 Identities=33% Similarity=0.534 Sum_probs=212.5
Q ss_pred CCCCCCCcccCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 116 APKPIKTWRQTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.-..|..+||++.+...|+. |++..||.+|+++||.++.|||+++.|+||||||+||++|+++++....+.-....
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 34445679999999999999965 89999999999999999999999999999999999999999999988765555556
Q ss_pred CCeEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccce
Q 042373 195 SPVGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l 234 (494)
|+.||||+||||||.|+ +|||||.|+|.+. ..+.++++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT--~~i~~s~L 288 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT--KSIKFSRL 288 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc--chheeeee
Confidence 99999999999999998 7999999999875 45789999
Q ss_pred EEEEEcccchhcccCChhHHHHHHHhhc-------------CCCcEEEecCCCChHHHHHHHh-----------------
Q 042373 235 TYLVLDEADRMFDMGFEPQITRIVQNIR-------------PDRQAVLFSPTFPPRVEILARK----------------- 284 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf~~~i~~Il~~l~-------------~~~Q~ilfSAT~~~~v~~l~~~----------------- 284 (494)
+||||||||+|+++||+..|..|++.+. +.+|.+|+|||++..|..|+..
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~ 368 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQL 368 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhc
Confidence 9999999999999999999999998772 2479999999999999988875
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 369 ~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~ 448 (708)
T KOG0348|consen 369 NPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEA 448 (708)
T ss_pred CcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhh
Confidence
Q ss_pred ----------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCH
Q 042373 285 ----------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDY 318 (494)
Q Consensus 285 ----------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~ 318 (494)
...--||+||||++||||+|+|.+||.||+|.+.
T Consensus 449 l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ 528 (708)
T KOG0348|consen 449 LLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFST 528 (708)
T ss_pred hhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCH
Confidence 2333499999999999999999999999999999
Q ss_pred hHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHH
Q 042373 319 EDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKA 352 (494)
Q Consensus 319 ~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~ 352 (494)
.+|+||+|| +|.+|.++.|+.+.+..|++.+.+.
T Consensus 529 adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 529 ADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999 8999999999999999888877764
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-50 Score=414.16 Aligned_cols=230 Identities=31% Similarity=0.467 Sum_probs=211.3
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.+..|++|+|+..+++.|+..+|..||.||+++||..|.|+|||+.|.|||||||||++|+|++++.... ....|.-|
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW--s~~DGlGa 144 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW--SPTDGLGA 144 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC--CCCCCcee
Confidence 4688999999999999999999999999999999999999999999999999999999999999987653 33448889
Q ss_pred EEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 199 LVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 199 LIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
|||+||||||.|+ ||||||+.+|..+. .++.+++.+||||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~--~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP--NFSTSNLQMLVLD 222 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC--CCCCCcceEEEec
Confidence 9999999999998 99999999998763 4678899999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
|||+|++|||...+..|++++|+.||++|||||.+..+..+++.
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 99999999999999999999999999999999999999999986
Q ss_pred ------------------------------------------------------------cCCccceeeccccccCCCCC
Q 042373 285 ------------------------------------------------------------TNVCNLSIANSVRARGLDEK 304 (494)
Q Consensus 285 ------------------------------------------------------------~g~~~ILVaTdv~~rGlDi~ 304 (494)
..+.-||+|||+++||||+|
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 45677999999999999999
Q ss_pred CceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccC-HHHHHHHHHH
Q 042373 305 ELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEEN-AIYATDLVKA 352 (494)
Q Consensus 305 ~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~-~~~~~~i~~~ 352 (494)
.|+|||.||+|.++.+||||+|| .+..|.++.++++.+ ..++..|.+.
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999 345899999999987 6666666654
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-48 Score=411.89 Aligned_cols=237 Identities=34% Similarity=0.476 Sum_probs=212.8
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC-CCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV-PGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~-~~~~~p~a 198 (494)
-.+|++++|++.++++|.++||..|||+|++|||.+++|+|++++||||||||++|++|+++++...+... ....++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 46899999999999999999999999999999999999999999999999999999999999997654321 12236899
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||+||||||.|+ +||++|.+++..+ .++++++++|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---~~~l~~v~~lVi 163 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---HINLGAIQVVVL 163 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccccEEEE
Confidence 9999999999997 7999999999764 457899999999
Q ss_pred cccchhcccCChhHHHHHHHhhcC--CCcEEEecCCCChHHHHHHHh---------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRP--DRQAVLFSPTFPPRVEILARK--------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~--~~Q~ilfSAT~~~~v~~l~~~--------------------------------- 284 (494)
||||+|++++|...+..++..++. .+|+++||||++..+..++..
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKM 243 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHH
Confidence 999999999999999999999974 678999999999988777653
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|+++|||||++++||||+|+
T Consensus 244 ~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 244 RLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 799999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhccCC---CcceEEEEecccCHHHHHHHHHHHHhccCc
Q 042373 306 LELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIYATDLVKAFELSELV 359 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitfv~~~~~~~~~~i~~~l~~~~~~ 359 (494)
|++|||||+|.+.++|+||+||+| +.|.||+|+++.+...+..|.+.+......
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~ 380 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPV 380 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999955 578999999999999999998888766433
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.7e-48 Score=416.72 Aligned_cols=234 Identities=35% Similarity=0.551 Sum_probs=212.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
++|++++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+........+...+++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999876432222233568999
Q ss_pred EccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 201 MAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 201 l~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
|+||||||.|+ +||++|.+++... .++++++++|||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~---~~~l~~v~~lViDE 157 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN---AVKLDQVEILVLDE 157 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC---CcccccceEEEeec
Confidence 99999999987 7999999988764 35789999999999
Q ss_pred cchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------- 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------- 284 (494)
||+|++++|...+..++..++..+|+++||||++..+..++..
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 237 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLS 237 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHH
Confidence 9999999999999999999999999999999999988777654
Q ss_pred -------------------------------------------------------cCCccceeeccccccCCCCCCceEE
Q 042373 285 -------------------------------------------------------TNVCNLSIANSVRARGLDEKELELV 309 (494)
Q Consensus 285 -------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~V 309 (494)
.|.++|||||++++||||||+|++|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 7899999999999999999999999
Q ss_pred EecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 310 INFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 310 Inyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
||||+|.+.++|+||+||+|| .|.+++|++..+...+..+++.+....
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999665 788999999999999999999877543
No 21
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-49 Score=405.36 Aligned_cols=262 Identities=29% Similarity=0.450 Sum_probs=218.4
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCC-----
Q 042373 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPV----- 189 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~----- 189 (494)
-+..+..|.+|+|+..++.+|..+||..||+||+.+||.++.| .|+++-|.|||||||||.+||++.+.+....
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456788999999999999999999999999999999999999 7999999999999999999999966543321
Q ss_pred --CCCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcce
Q 042373 190 --VPGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKI 228 (494)
Q Consensus 190 --~~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~ 228 (494)
......|.+||++||||||.|+ +|||||+.++..++..+
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 1111245699999999999998 89999999999887767
Q ss_pred ecccceEEEEEcccchhcccCChhHHHHHHHhhc-----CCCcEEEecCCCChHHH---------------------HHH
Q 042373 229 TNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR-----PDRQAVLFSPTFPPRVE---------------------ILA 282 (494)
Q Consensus 229 ~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-----~~~Q~ilfSAT~~~~v~---------------------~l~ 282 (494)
.+|+.|++|||||||||++.|+...+..|++.+. +.+|++.||||++-... .|.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 7899999999999999999999999999998885 46899999999863321 222
Q ss_pred Hh------------------------------------------------------------------------------
Q 042373 283 RK------------------------------------------------------------------------------ 284 (494)
Q Consensus 283 ~~------------------------------------------------------------------------------ 284 (494)
..
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 21
Q ss_pred ---------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHH
Q 042373 285 ---------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYA 346 (494)
Q Consensus 285 ---------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~ 346 (494)
....-||||||||+||||||+|.|||||.+|.+.+.||||.|| |+..|..+.|+.+.+...+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 5566799999999999999999999999999999999999999 7889999999999999999
Q ss_pred HHHHHHHHhccC-cchHHHHHHHHHHHHHHhc
Q 042373 347 TDLVKAFELSEL-VVRDDLKAVADSFIAKVNL 377 (494)
Q Consensus 347 ~~i~~~l~~~~~-~vp~~l~~~~~~~~~~~~~ 377 (494)
..|.+-|+.... ++-+-...+.+.+.+++..
T Consensus 576 ~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrL 607 (731)
T KOG0347|consen 576 KKLCKTLKKKEDLPIFPVETDIMDALKERVRL 607 (731)
T ss_pred HHHHHHHhhccCCCceeccHHHHHHHHHHHHH
Confidence 999998886432 2212234444444444443
No 22
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-49 Score=385.46 Aligned_cols=235 Identities=26% Similarity=0.460 Sum_probs=220.8
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
..|+++.|..+++..+.+.||++|+|||.++||.++.|||+++.|..|+|||.||++|+++.+.. .....+++|
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~------~~~~IQ~~i 158 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP------KKNVIQAII 158 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc------cccceeEEE
Confidence 56999999999999999999999999999999999999999999999999999999999998843 334778999
Q ss_pred EccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 201 MAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 201 l~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
++||||||.|+ +||||++|++.++ ...++.+.++|+||
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg---Va~ls~c~~lV~DE 235 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG---VADLSDCVILVMDE 235 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc---cccchhceEEEech
Confidence 99999999997 8999999999874 56899999999999
Q ss_pred cchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------- 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------- 284 (494)
||.|+...|.+.++.++..+|+.+|+++||||||-.+..+..+
T Consensus 236 ADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 236 ADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHH
Confidence 9999999999999999999999999999999999999888876
Q ss_pred ------------------------------------------------------cCCccceeeccccccCCCCCCceEEE
Q 042373 285 ------------------------------------------------------TNVCNLSIANSVRARGLDEKELELVI 310 (494)
Q Consensus 285 ------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VI 310 (494)
+|.|+.|||||.+.||||++.|++||
T Consensus 316 LfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 316 LFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 89999999999999999999999999
Q ss_pred ecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHH
Q 042373 311 NFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDL 364 (494)
Q Consensus 311 nyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l 364 (494)
|||+|.+.++|+||+||+|| -|.||.|++.++...+..|++-|.....++|..+
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 99999999999999999554 7899999999999999999999999999999655
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-47 Score=388.58 Aligned_cols=234 Identities=29% Similarity=0.500 Sum_probs=217.5
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++|||++.|++++.++||++||-||..+||.++.|+|+++.|.||||||+||++|+++.++.......+..+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 68999999999999999999999999999999999999999999999999999999999999998877666777999999
Q ss_pred EccchhHHHhh-----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 201 MAPTGELVRQQ-----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|+||||||.|+ +||+++..++..+.. ..+..++++|+
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LVv 176 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL--EYLDSLSFLVV 176 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc--hhhhheeeEEe
Confidence 99999999998 799999999988643 67899999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||.|+..||++.+..|..++|+..|++++|||++..+..+-..
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 999999999999999999999999999999999999999877664
Q ss_pred -----------------------------------------------------------cCCccceeecc----------
Q 042373 285 -----------------------------------------------------------TNVCNLSIANS---------- 295 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTd---------- 295 (494)
.|-++|+||||
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 78999999998
Q ss_pred -------------------------ccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHH
Q 042373 296 -------------------------VRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYAT 347 (494)
Q Consensus 296 -------------------------v~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~ 347 (494)
-.+||||+.+|.+|||||+|.+...||||+|| +++.|.+++||.+.+.....
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 23899999999999999999999999999999 67799999999999888778
Q ss_pred HHHHHHHhc
Q 042373 348 DLVKAFELS 356 (494)
Q Consensus 348 ~i~~~l~~~ 356 (494)
.|+.+++..
T Consensus 417 ~le~~~~d~ 425 (569)
T KOG0346|consen 417 SLESILKDE 425 (569)
T ss_pred HHHHHHhhH
Confidence 888777653
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=8.4e-47 Score=403.87 Aligned_cols=229 Identities=34% Similarity=0.483 Sum_probs=210.7
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+|++++|++.++++|.++||..|||+|.+|||.++.|+|+|++||||||||++|++|+++++.... .++++|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~------~~~~~l 76 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR------FRVQAL 76 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc------CCceEE
Confidence 36899999999999999999999999999999999999999999999999999999999999985322 267899
Q ss_pred EEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 200 VMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 200 Il~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
||+||||||.|+ +||++|.+++.++ .+.++++++||+
T Consensus 77 il~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~---~~~l~~l~~lVi 153 (460)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG---TLDLDALNTLVL 153 (460)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC---CccHHHCCEEEE
Confidence 999999999997 7999999999864 357899999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||+|+++||...+..++..++..+|+++||||+|+.+..++..
T Consensus 154 DEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l 233 (460)
T PRK11776 154 DEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPAL 233 (460)
T ss_pred ECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHH
Confidence 999999999999999999999999999999999999998887765
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.|..+|||||++++||||+|+|++
T Consensus 234 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 789999999999999999999999
Q ss_pred EEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 309 VINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 309 VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
|||||+|.+.+.|+||+||+|| .|.||+|+++.+...+..+.+.+....
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~ 365 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKL 365 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCC
Confidence 9999999999999999999655 789999999999999898988876543
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-46 Score=410.02 Aligned_cols=237 Identities=32% Similarity=0.473 Sum_probs=211.5
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC-CCCCCCe
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV-PGDDSPV 197 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~-~~~~~p~ 197 (494)
...+|++++|++.|+++|.++||..|||||.++||.++.|+|+|++||||||||++|++|+++++...+... ....+++
T Consensus 7 ~~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 7 TDLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 335799999999999999999999999999999999999999999999999999999999999997643211 1122689
Q ss_pred EEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 198 GLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 198 aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
+|||+||||||.|+ +||++|++++... ..+.++.+++||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~--~~~~l~~v~~lV 164 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH--KVVSLHACEICV 164 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--cccchhheeeeE
Confidence 99999999999998 7999999998764 245789999999
Q ss_pred EcccchhcccCChhHHHHHHHhhcC--CCcEEEecCCCChHHHHHHHh--------------------------------
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRP--DRQAVLFSPTFPPRVEILARK-------------------------------- 284 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~--~~Q~ilfSAT~~~~v~~l~~~-------------------------------- 284 (494)
|||||+|++++|...+..|+..++. .+|+++||||++..+..++..
T Consensus 165 iDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEK 244 (572)
T ss_pred ecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHH
Confidence 9999999999999999999999976 789999999999888776654
Q ss_pred ------------------------------------------------------------cCCccceeeccccccCCCCC
Q 042373 285 ------------------------------------------------------------TNVCNLSIANSVRARGLDEK 304 (494)
Q Consensus 285 ------------------------------------------------------------~g~~~ILVaTdv~~rGlDi~ 304 (494)
.|+++|||||++++|||||+
T Consensus 245 ~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 245 QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 78999999999999999999
Q ss_pred CceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 305 ELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 305 ~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
+|++|||||+|.+.++|+||+||+|| .|.||+|+++.+...+..|.+.+....
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~ 380 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKI 380 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999555 789999999999889999988876543
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.4e-46 Score=412.35 Aligned_cols=231 Identities=35% Similarity=0.540 Sum_probs=211.8
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+|++++|++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||++|++|+++.+.... .++++|
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~------~~~~~L 78 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL------KAPQIL 78 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc------CCCeEE
Confidence 46799999999999999999999999999999999999999999999999999999999999885432 268999
Q ss_pred EEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 200 VMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 200 Il~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
||+|||+||.|+ +||++|++++.++ .+++++|.+|||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~---~l~l~~l~~lVl 155 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG---TLDLSKLSGLVL 155 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcchhhceEEEe
Confidence 999999999997 7999999999874 457999999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||+|++++|...+..|+..++..+|+++||||+|..+..+++.
T Consensus 156 DEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~ 235 (629)
T PRK11634 156 DEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 (629)
T ss_pred ccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHH
Confidence 999999999999999999999999999999999999988777654
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.|+++|||||++++||||+|+|+
T Consensus 236 L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 78999999999999999999999
Q ss_pred EEEecCCCCCHhHHHhhhccCC---CcceEEEEecccCHHHHHHHHHHHHhccCc
Q 042373 308 LVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIYATDLVKAFELSELV 359 (494)
Q Consensus 308 ~VInyd~P~s~~~yvhR~GRaG---r~G~aitfv~~~~~~~~~~i~~~l~~~~~~ 359 (494)
+|||||+|.+.+.|+||+||+| +.|.|++|+++.+...+..|.+.++.....
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~ 370 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcce
Confidence 9999999999999999999954 578999999999999999998887765444
No 27
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-46 Score=388.34 Aligned_cols=266 Identities=28% Similarity=0.421 Sum_probs=244.7
Q ss_pred HHHhhcCceeccCCCCCCCCCccc----CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHH
Q 042373 102 AYRKQLDLKIREKCAPKPIKTWRQ----TGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 102 ~~r~~~~i~v~g~~~P~pi~~f~~----l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafll 177 (494)
..|+.+.+.+.|.++|.|+.+|++ ...++.+++.+...||..|||+|.+|||.++.++|+++|||||||||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 678889999999999999999998 5699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------------------------------hhhh
Q 042373 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------------------------------VRRG 215 (494)
Q Consensus 178 pil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------------------------------~TPg 215 (494)
|++.++..... .++..|-+++|+.|||+||.|+ .||-
T Consensus 193 Pil~~L~~~~~-~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ 271 (593)
T KOG0344|consen 193 PILQHLKDLSQ-EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPM 271 (593)
T ss_pred HHHHHHHHhhc-ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHH
Confidence 99999976442 2334488999999999999998 6999
Q ss_pred HHHHHHHhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHh---------
Q 042373 216 RMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIR-PDRQAVLFSPTFPPRVEILARK--------- 284 (494)
Q Consensus 216 rl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~--------- 284 (494)
|+..++..+.. .++++.|.++|+||||++++. +|..|+..|+..+. ++..+-+||||++..+++++..
T Consensus 272 ri~~~~~~~~~-~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vi 350 (593)
T KOG0344|consen 272 RIVGLLGLGKL-NIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVI 350 (593)
T ss_pred HHHHHhcCCCc-cchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEE
Confidence 99999887543 368999999999999999998 99999999998875 5677889999999999999886
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDET 430 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHH
Confidence
Q ss_pred -----cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhc
Q 042373 285 -----TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELS 356 (494)
Q Consensus 285 -----~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~ 356 (494)
.|++++||||++++||||+.+|++|||||+|.+...|+||+|| +|+.|.||||++..+..+++.|...++.+
T Consensus 431 ~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~s 510 (593)
T KOG0344|consen 431 MERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQS 510 (593)
T ss_pred HHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHc
Confidence 7999999999999999999999999999999999999999998 77789999999999999999999999999
Q ss_pred cCcchHHHHHHHH
Q 042373 357 ELVVRDDLKAVAD 369 (494)
Q Consensus 357 ~~~vp~~l~~~~~ 369 (494)
+.+||+++..+..
T Consensus 511 G~evpe~~m~~~k 523 (593)
T KOG0344|consen 511 GCEVPEKIMGIKK 523 (593)
T ss_pred CCcchHHHHhhhh
Confidence 9999999887764
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6e-45 Score=386.70 Aligned_cols=230 Identities=33% Similarity=0.504 Sum_probs=206.6
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
++|++++|++.+++.|.++||..||++|.++||.++.|+|++++||||||||++|++|+++++...+.. ...++++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~li 78 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILI 78 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEE
Confidence 369999999999999999999999999999999999999999999999999999999999999764321 112578999
Q ss_pred EccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 201 MAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 201 l~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
|+||+|||.|+ +||++|.+++..+ .++++++++|||||
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~---~~~~~~v~~lViDE 155 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE---NFDCRAVETLILDE 155 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC---CcCcccCCEEEEEC
Confidence 99999999996 7999999999874 34688999999999
Q ss_pred cchhcccCChhHHHHHHHhhcCCCcEEEecCCCCh-HHHHHHHh------------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPP-RVEILARK------------------------------------ 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~-~v~~l~~~------------------------------------ 284 (494)
||+|++++|...+..|...++..+|+++||||++. .+..++..
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 235 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTAL 235 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHH
Confidence 99999999999999999999999999999999985 35555443
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.|.++|||||++++||||+|+|+
T Consensus 236 l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 236 LCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 78999999999999999999999
Q ss_pred EEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHh
Q 042373 308 LVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 308 ~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
+|||||+|.+...|+||+||+|| .|.+++|++..+...+..+.+++..
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 99999999999999999999655 7889999999999999888887654
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-44 Score=387.17 Aligned_cols=246 Identities=30% Similarity=0.488 Sum_probs=215.7
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-CCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-GDDSP 196 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~-~~~~p 196 (494)
.....|.+++|++.|+++|.++||..||++|.++||.++.|+|+|++|+||||||++|++|+++.+...+.... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 34578999999999999999999999999999999999999999999999999999999999999986542211 11258
Q ss_pred eEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 197 VGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 197 ~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
++|||+|||+||.|+ +||++|.+++... ...|+++++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~ 240 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEV 240 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCce
Confidence 999999999999997 7999999888753 357899999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcC--CCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRP--DRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~--~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
|||||||++++++|.+++..|+..++. .+|+++||||++..+..+++.
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 320 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS 320 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch
Confidence 999999999999999999999998864 679999999998877766543
Q ss_pred --------------------------------------------------------------cCCccceeeccccccCCC
Q 042373 285 --------------------------------------------------------------TNVCNLSIANSVRARGLD 302 (494)
Q Consensus 285 --------------------------------------------------------------~g~~~ILVaTdv~~rGlD 302 (494)
.|+++|||||++++||||
T Consensus 321 ~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 321 DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 789999999999999999
Q ss_pred CCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc-Ccc-hHHHHH
Q 042373 303 EKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE-LVV-RDDLKA 366 (494)
Q Consensus 303 i~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~-~~v-p~~l~~ 366 (494)
|++|++|||||+|.+..+|+||+||+|| .|.+|+|++++|..++..+++++.... .++ |.+|..
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 9999999999999999999999999766 678999999999999999999988764 343 445543
No 30
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-44 Score=363.92 Aligned_cols=227 Identities=33% Similarity=0.535 Sum_probs=209.9
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
-.|.++||+..++++|.+.||..|||||+.+||.||.|+|++..|.||||||.||++||++++.... ..|.++||
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Rali 95 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALI 95 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccceee
Confidence 5799999999999999999999999999999999999999999999999999999999999997543 23789999
Q ss_pred EccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 201 MAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 201 l~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
++|||||+.|. +||||+..+...- .+.|+.+.|||+||
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem---~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM---TLTLSSVEYVVFDE 172 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe---eccccceeeeeehh
Confidence 99999999997 6888887665542 25799999999999
Q ss_pred cchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------- 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------- 284 (494)
||+|+.|||.+++..++.+++..+|+++||||+|..+..+++.
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 9999999999999999999999999999999999988777775
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.++..+||.||+++||+|||..+.
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 678889999999999999999999
Q ss_pred EEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHh
Q 042373 309 VINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 309 VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
|||||+|.+..-|+||+|| +|+.|++|+||.+.+..++-+|.-++..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 9999999999999999999 7999999999999999999999887764
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.9e-43 Score=367.41 Aligned_cols=235 Identities=28% Similarity=0.461 Sum_probs=212.4
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
...+|++++|++.++++|.++||..|||+|.++|+.+++|+|++++||||||||++|++|+++++... ..++++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~~ 99 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQA 99 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCceE
Confidence 36889999999999999999999999999999999999999999999999999999999999987432 126789
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||+||++|+.|+ +||++|.+++..+. ..++++++||+
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvVi 176 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFIL 176 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEE
Confidence 9999999999997 78999998887643 46899999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||++++.+|...+..++..+++..|++++|||+|+.+..+...
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFD 256 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHH
Confidence 999999999999999999999999999999999999887665543
Q ss_pred ----------------------------------------------------------cCCccceeeccccccCCCCCCc
Q 042373 285 ----------------------------------------------------------TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v 306 (494)
.|+++|||||++++||||+|++
T Consensus 257 ~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 257 TLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 7899999999999999999999
Q ss_pred eEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchH
Q 042373 307 ELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRD 362 (494)
Q Consensus 307 ~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~ 362 (494)
++|||||+|.+...|+||+||+|| .|.|++|+++++...+..+++.+.....+.|.
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 999999999999999999999765 78899999999999999998888876666554
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-42 Score=343.36 Aligned_cols=242 Identities=31% Similarity=0.497 Sum_probs=217.3
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
-.+++|++|+|.|++++.|..|+|.+|+.||..|+|.+|.. +|+|+++..|+|||.||.|.||.++.. ....
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~~~~ 160 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------DVVV 160 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------cccC
Confidence 45789999999999999999999999999999999999987 899999999999999999999998743 2337
Q ss_pred CeEEEEccchhHHHhh------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 196 PVGLVMAPTGELVRQQ------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|+++-|+||||||.|+ +|||.+.|++.. .+++.++.++.+|+
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~k--lk~id~~kikvfVl 238 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLK--LKCIDLEKIKVFVL 238 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHH--HHhhChhhceEEEe
Confidence 9999999999999998 799999999986 35678999999999
Q ss_pred cccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 240 DEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
||||.|++ .||.++-.+|...++++.|+++||||+...+..++.+
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~ 318 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKY 318 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHH
Confidence 99999997 5799999999999999999999999999999999987
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|..+|||+|+|++||||++.
T Consensus 319 ~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~q 398 (477)
T KOG0332|consen 319 QALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQ 398 (477)
T ss_pred HHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccce
Confidence 799999999999999999999
Q ss_pred ceEEEecCCCC------CHhHHHhhhcc---CCCcceEEEEeccc-CHHHHHHHHHHHHhcc-CcchHHHHHH
Q 042373 306 LELVINFDAPN------DYEDYVHHCCQ---SWLKSCAFRFISEE-NAIYATDLVKAFELSE-LVVRDDLKAV 367 (494)
Q Consensus 306 v~~VInyd~P~------s~~~yvhR~GR---aGr~G~aitfv~~~-~~~~~~~i~~~l~~~~-~~vp~~l~~~ 367 (494)
|++|||||+|. +.+.|+||+|| .|++|.+|.|+... ....+..|.++++... ...|.++.++
T Consensus 399 Vs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 399 VSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred EEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99999999995 78999999999 56699999999865 6778889999986543 4456666554
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-42 Score=348.79 Aligned_cols=240 Identities=31% Similarity=0.473 Sum_probs=222.1
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCC
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSP 196 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p 196 (494)
-+.+.+|++++|++.|++.+...||++|+.||+.||+++..|+|+++.+++|+|||.+|.+++++++-.. ....
T Consensus 22 ~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------~ke~ 95 (397)
T KOG0327|consen 22 NEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------VKET 95 (397)
T ss_pred HHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------hHHH
Confidence 3446799999999999999999999999999999999999999999999999999999999999998322 2267
Q ss_pred eEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 197 VGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 197 ~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+||+++||||||.|+ +||||+.+++..+ .+....+++
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKm 172 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKM 172 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeE
Confidence 899999999999998 7999999999875 346778999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh--------------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK-------------------------------- 284 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------- 284 (494)
+|+||||.|+..||.++|..|+++++++.|+++||||+|+++..+.++
T Consensus 173 fvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k 252 (397)
T KOG0327|consen 173 FVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEK 252 (397)
T ss_pred EeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccccc
Confidence 999999999999999999999999999999999999999999988876
Q ss_pred ----------------------------------------------------------cCCccceeeccccccCCCCCCc
Q 042373 285 ----------------------------------------------------------TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v 306 (494)
.|..+|||.|++++||||+.++
T Consensus 253 ~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~ 332 (397)
T KOG0327|consen 253 LDTLCDLYRRVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQV 332 (397)
T ss_pred ccHHHHHHHhhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhc
Confidence 7999999999999999999999
Q ss_pred eEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHH
Q 042373 307 ELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLK 365 (494)
Q Consensus 307 ~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~ 365 (494)
.+|||||+|...++|+||+|| .|++|.+++|++..+.+.+.++.+++.....+.|....
T Consensus 333 slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 333 SLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred ceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchh
Confidence 999999999999999999999 56799999999999999999999999988888886553
No 34
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-42 Score=350.94 Aligned_cols=242 Identities=24% Similarity=0.368 Sum_probs=196.3
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHH---------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 130 TKILETFSKLNHENPVAIQAPASALII---------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 130 ~~ll~~l~~~g~~~ptpiQ~~aip~il---------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
..+.+.|.++++...+|+|.+++|.++ .++|+.+.||||||||+||.|||++.+..++- +..+|||
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v-----~~LRavV 220 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV-----KRLRAVV 220 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc-----cceEEEE
Confidence 344556899999999999999999996 36899999999999999999999999976531 2578999
Q ss_pred EccchhHHHhh--------------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 201 MAPTGELVRQQ--------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 201 l~PTreLa~Qi--------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
|+|||+|+.|+ +|||||+|+|.+. +-++|++++|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~--k~f~Lk~Lrf 298 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT--KSFDLKHLRF 298 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC--CCcchhhceE
Confidence 99999999998 7999999999864 4579999999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcC----------------------------------CCcEEEecCCCChHHHHHH
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRP----------------------------------DRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~----------------------------------~~Q~ilfSAT~~~~v~~l~ 282 (494)
+|+||||||++..|..++..++.++.. ..+.++||||+...-..+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 999999999998777766655544321 1256788888765544444
Q ss_pred Hh------------------------------------------------------------------------------
Q 042373 283 RK------------------------------------------------------------------------------ 284 (494)
Q Consensus 283 ~~------------------------------------------------------------------------------ 284 (494)
..
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 32
Q ss_pred ----------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEec
Q 042373 285 ----------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFIS 339 (494)
Q Consensus 285 ----------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~ 339 (494)
.|.+++|||||+++||||+.+|+.|||||+|.+...||||+|| ||+.|.||++++
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 7999999999999999999999999999999999999999999 899999999999
Q ss_pred ccCHHHHHHHHHHHHh----ccCcchHHH-HHHHHHHHHHHhcc
Q 042373 340 EENAIYATDLVKAFEL----SELVVRDDL-KAVADSFIAKVNLG 378 (494)
Q Consensus 340 ~~~~~~~~~i~~~l~~----~~~~vp~~l-~~~~~~~~~~~~~~ 378 (494)
..+.+.+..+.+.... ..+++|... ..+...|...+...
T Consensus 539 ~~~~r~F~klL~~~~~~d~~~i~~~e~~~~~~~~~~Yt~ALEsL 582 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKTNLWDGVEIQPIEYIFIKDEDDRYTKALESL 582 (620)
T ss_pred cccchHHHHHHHHhcccCCcceeecCchHHHHHHHHHHHHHHHH
Confidence 9999888888776554 445555333 33333555444433
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.2e-40 Score=347.16 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=199.8
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 115 ~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
-.|.-...|+++-|...++..|++.+|..||+||..|||.++++-|+|++|..|+|||+.|.+.+++.+..+ ..
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~------~~ 92 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR------SS 92 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc------cC
Confidence 345566789999999999999999999999999999999999999999999999999999999888877432 23
Q ss_pred CCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceE
Q 042373 195 SPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
.++++|++||||+|.|| +||||+..++.. ..++.+.|+
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el---~~~n~s~vr 169 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL---GAMNMSHVR 169 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh---cCCCcccee
Confidence 78999999999999998 799999999886 467899999
Q ss_pred EEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 236 YLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 236 ~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
++||||||.|++ ..|.++|..|+..+|..+|++.||||.|..+..+..+
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSP 249 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCC
Confidence 999999999999 5699999999999999999999999999988766655
Q ss_pred ----------------------------------------------------------------------cCCccceeec
Q 042373 285 ----------------------------------------------------------------------TNVCNLSIAN 294 (494)
Q Consensus 285 ----------------------------------------------------------------------~g~~~ILVaT 294 (494)
.-.++|||+|
T Consensus 250 nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 5678999999
Q ss_pred cccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCH
Q 042373 295 SVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENA 343 (494)
Q Consensus 295 dv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~ 343 (494)
|+.+||||-++|++|||.|.|.+.++|.|||||||| .|.++||+.....
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999776 7889999987643
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1e-38 Score=358.01 Aligned_cols=223 Identities=19% Similarity=0.202 Sum_probs=183.8
Q ss_pred CCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh
Q 042373 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206 (494)
Q Consensus 127 ~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre 206 (494)
.|++.|.+.|+++||.+||++|.++||.++.|+|+++++|||||||+||++|+++.+...+ ++++|||+||||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-------~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-------RATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-------CcEEEEEcChHH
Confidence 4899999999999999999999999999999999999999999999999999999997532 679999999999
Q ss_pred HHHhh-------------------------------------hhhhHHHHHHH-hcCcceecccceEEEEEcccchhccc
Q 042373 207 LVRQQ-------------------------------------VRRGRMIDLLC-KNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 207 La~Qi-------------------------------------~TPgrl~dll~-~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
||.|+ +||++|...+. ........|+++++|||||||+|.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g- 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG- 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-
Confidence 99998 67877754322 1111112378999999999999986
Q ss_pred CChhHHHHHHHhh-------cCCCcEEEecCCCChHHHHHHH--------------------------------------
Q 042373 249 GFEPQITRIVQNI-------RPDRQAVLFSPTFPPRVEILAR-------------------------------------- 283 (494)
Q Consensus 249 gf~~~i~~Il~~l-------~~~~Q~ilfSAT~~~~v~~l~~-------------------------------------- 283 (494)
.|..++..++.++ +.++|+++||||+++..+...+
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 251 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAP 251 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccc
Confidence 4777777666554 4578999999998754331100
Q ss_pred --------h------------------------------------------------------------------cCCcc
Q 042373 284 --------K------------------------------------------------------------------TNVCN 289 (494)
Q Consensus 284 --------~------------------------------------------------------------------~g~~~ 289 (494)
. +|+++
T Consensus 252 ~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~ 331 (742)
T TIGR03817 252 VRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL 331 (742)
T ss_pred cccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce
Confidence 0 78999
Q ss_pred ceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEec--ccCHHHHHHHHHHHHhcc
Q 042373 290 LSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFIS--EENAIYATDLVKAFELSE 357 (494)
Q Consensus 290 ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~--~~~~~~~~~i~~~l~~~~ 357 (494)
+||||++++|||||++|++|||||+|.+..+|+||+||+|| .|.+++|++ +.+..++..+.++++...
T Consensus 332 vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~ 404 (742)
T TIGR03817 332 GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPV 404 (742)
T ss_pred EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCC
Confidence 99999999999999999999999999999999999999666 578998886 346667777777777543
No 37
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-39 Score=305.19 Aligned_cols=233 Identities=27% Similarity=0.435 Sum_probs=206.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
+-|.++-|.++|++++-.+||+.|+.+|..|||...-|-|+++.|..|.|||..|++..++.+- +..+...+|+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie------pv~g~vsvlv 115 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE------PVDGQVSVLV 115 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC------CCCCeEEEEE
Confidence 5588889999999999999999999999999999999999999999999999999999998873 3333567999
Q ss_pred EccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 201 MAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 201 l~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
+|.|||||-|| +||||++.+..++ .++|++++++|+|
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k---~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR---SLNLKNVKHFVLD 192 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc---cCchhhcceeehh
Confidence 99999999999 7999999988874 5689999999999
Q ss_pred ccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 241 EADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 241 EaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
|||.|+++ ..+..++.|++..|.+.|+++||||+++++...+++
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr 272 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR 272 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 99999864 568899999999999999999999999999988887
Q ss_pred ------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEE
Q 042373 285 ------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRF 337 (494)
Q Consensus 285 ------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitf 337 (494)
+-..+ +|||+++.||+||..|+.|||||+|.+..+|+||+||||| +|.+|+|
T Consensus 273 kl~dLLd~LeFNQVvIFvKsv~Rl~f~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitf 351 (387)
T KOG0329|consen 273 KLNDLLDVLEFNQVVIFVKSVQRLSFQKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 351 (387)
T ss_pred hhhhhhhhhhhcceeEeeehhhhhhhhhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeeh
Confidence 01122 8999999999999999999999999999999999999766 7889999
Q ss_pred eccc-CHHHHHHHHHHHHhccCcchHH
Q 042373 338 ISEE-NAIYATDLVKAFELSELVVRDD 363 (494)
Q Consensus 338 v~~~-~~~~~~~i~~~l~~~~~~vp~~ 363 (494)
++.. +...+..+..-++....++|+.
T Consensus 352 vs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 352 VSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9864 6777787777777777777765
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.4e-36 Score=342.26 Aligned_cols=217 Identities=21% Similarity=0.334 Sum_probs=174.2
Q ss_pred Cccc--CCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 122 TWRQ--TGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 122 ~f~~--l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.|.. ++....+...+++ +||..++|+|.++|+.++.|+|+|+++|||+|||+||+||++.. +..+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiT 503 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGIT 503 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcE
Confidence 4664 4555666666654 89999999999999999999999999999999999999999853 4579
Q ss_pred EEEccchhHHHhh-----------------------------------------hhhhHHH--HHHHhcCcceecccceE
Q 042373 199 LVMAPTGELVRQQ-----------------------------------------VRRGRMI--DLLCKNGVKITNLTRVT 235 (494)
Q Consensus 199 LIl~PTreLa~Qi-----------------------------------------~TPgrl~--dll~~~~~~~~~l~~l~ 235 (494)
|||+|+++|+.++ +||++|. +.+...-........+.
T Consensus 504 LVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Ls 583 (1195)
T PLN03137 504 LVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLA 583 (1195)
T ss_pred EEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccc
Confidence 9999999999743 5777764 22221100111234589
Q ss_pred EEEEcccchhcccC--ChhHHHHH--HHhhcCCCcEEEecCCCChHHHHHHHh---------------------------
Q 042373 236 YLVLDEADRMFDMG--FEPQITRI--VQNIRPDRQAVLFSPTFPPRVEILARK--------------------------- 284 (494)
Q Consensus 236 ~lVlDEaD~ml~~g--f~~~i~~I--l~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------- 284 (494)
+|||||||+|++|| |++.+..+ +...-+.+|+++||||+++.+...+..
T Consensus 584 lIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~ 663 (1195)
T PLN03137 584 RFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT 663 (1195)
T ss_pred eeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc
Confidence 99999999999998 88887764 444446789999999999876643221
Q ss_pred ----------------------------------------------------------------cCCccceeeccccccC
Q 042373 285 ----------------------------------------------------------------TNVCNLSIANSVRARG 300 (494)
Q Consensus 285 ----------------------------------------------------------------~g~~~ILVaTdv~~rG 300 (494)
.|.++|||||++++||
T Consensus 664 kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMG 743 (1195)
T PLN03137 664 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743 (1195)
T ss_pred hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcC
Confidence 7899999999999999
Q ss_pred CCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHH
Q 042373 301 LDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLV 350 (494)
Q Consensus 301 lDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~ 350 (494)
||+|+|++|||||+|.+++.|+||+||+|| .|.|++|++..|...+..+.
T Consensus 744 IDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999887 55799999887766555554
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.4e-36 Score=319.60 Aligned_cols=200 Identities=19% Similarity=0.294 Sum_probs=164.6
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
.+||..|+|+|.++|+.+++|+|+++++|||||||++|++|++.. +..+|||+|||+|+.|+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999842 45799999999999876
Q ss_pred ---------------------------------hhhhHHHHHHHhcCccee-cccceEEEEEcccchhcccC--ChhHHH
Q 042373 212 ---------------------------------VRRGRMIDLLCKNGVKIT-NLTRVTYLVLDEADRMFDMG--FEPQIT 255 (494)
Q Consensus 212 ---------------------------------~TPgrl~dll~~~~~~~~-~l~~l~~lVlDEaD~ml~~g--f~~~i~ 255 (494)
+||+++...... ...+ .+.++.+||+||||++++|| |++.+.
T Consensus 74 ~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~--~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 74 SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRL--LQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhH--HHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 356654321100 0011 46789999999999999988 777776
Q ss_pred HH--HHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------------------
Q 042373 256 RI--VQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------------------- 284 (494)
Q Consensus 256 ~I--l~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------- 284 (494)
.+ +....++.|+++||||+++.+......
T Consensus 152 ~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~II 231 (470)
T TIGR00614 152 ALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGII 231 (470)
T ss_pred HHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEE
Confidence 65 233336789999999998876433221
Q ss_pred ------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHH
Q 042373 285 ------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYV 322 (494)
Q Consensus 285 ------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yv 322 (494)
.|.++|||||++++||||+|+|++||||++|.+.+.|+
T Consensus 232 F~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~ 311 (470)
T TIGR00614 232 YCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYY 311 (470)
T ss_pred EECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHH
Confidence 78999999999999999999999999999999999999
Q ss_pred hhhccCCC---cceEEEEecccCHHHHHHHHH
Q 042373 323 HHCCQSWL---KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 323 hR~GRaGr---~G~aitfv~~~~~~~~~~i~~ 351 (494)
||+||+|| .|.|++|+++.+...++.+..
T Consensus 312 Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 312 QESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred hhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999777 568999999988877776654
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.4e-34 Score=319.11 Aligned_cols=209 Identities=18% Similarity=0.265 Sum_probs=164.7
Q ss_pred CCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 127 GLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 127 ~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
.+.....+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..+|||+|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHH
Confidence 344444455544 79999999999999999999999999999999999999999843 34799999999
Q ss_pred hHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhc
Q 042373 206 ELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 206 eLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
+|+.|+ +||+++...... ..+...++.+||+||||++.
T Consensus 76 sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~---~~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 76 SLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL---EHLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH---HHHhhCCCCEEEEeCccccc
Confidence 999886 344444311000 01223478999999999999
Q ss_pred ccC--ChhHHHHHH--HhhcCCCcEEEecCCCChHHHHHH-Hh-------------------------------------
Q 042373 247 DMG--FEPQITRIV--QNIRPDRQAVLFSPTFPPRVEILA-RK------------------------------------- 284 (494)
Q Consensus 247 ~~g--f~~~i~~Il--~~l~~~~Q~ilfSAT~~~~v~~l~-~~------------------------------------- 284 (494)
+|| |++.+..+. ...-+..|+++||||.++.+.... ..
T Consensus 153 ~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~ 232 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQ 232 (607)
T ss_pred cccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHH
Confidence 987 777765552 222367899999999987664321 11
Q ss_pred ---------------------------------------------------cCCccceeeccccccCCCCCCceEEEecC
Q 042373 285 ---------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFD 313 (494)
Q Consensus 285 ---------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd 313 (494)
.|.++|||||+++++|||+|+|++|||||
T Consensus 233 ~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 233 EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeC
Confidence 78999999999999999999999999999
Q ss_pred CCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHH
Q 042373 314 APNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLV 350 (494)
Q Consensus 314 ~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~ 350 (494)
+|.+.+.|+||+||+|| .|.|++|+++.+...++.+.
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999887 45799999998876655443
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.4e-33 Score=314.74 Aligned_cols=209 Identities=21% Similarity=0.236 Sum_probs=180.6
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
+.|++++|++.+++.+++.||.+|+|+|.+|++. ++.|+|++++||||||||++|.+|+++++.. +.++|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal 71 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKAL 71 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEE
Confidence 3689999999999999999999999999999998 7899999999999999999999999999852 56899
Q ss_pred EEccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 200 VMAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 200 Il~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
||+|||+||.|+ +||+++..++.... ..++++++||+||+|+
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA---PWLDDITCVVVDEVHL 148 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh---hhhhhcCEEEEECccc
Confidence 999999999997 79999987776532 3478999999999999
Q ss_pred hcccCChhHHHHHHHhh---cCCCcEEEecCCCCh--HHHHHHH------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNI---RPDRQAVLFSPTFPP--RVEILAR------------------------------------ 283 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l---~~~~Q~ilfSAT~~~--~v~~l~~------------------------------------ 283 (494)
|.+.++.+.++.++..+ .+..|++++|||+++ .+..+..
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 99989999998887766 467899999999854 1110000
Q ss_pred ---------h----------------------------------------------------------------------
Q 042373 284 ---------K---------------------------------------------------------------------- 284 (494)
Q Consensus 284 ---------~---------------------------------------------------------------------- 284 (494)
.
T Consensus 229 ~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~ 308 (737)
T PRK02362 229 KDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAF 308 (737)
T ss_pred chHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEe
Confidence 0
Q ss_pred ------------------cCCccceeeccccccCCCCCCceEEEe----cC-----CCCCHhHHHhhhccCCCc-----c
Q 042373 285 ------------------TNVCNLSIANSVRARGLDEKELELVIN----FD-----APNDYEDYVHHCCQSWLK-----S 332 (494)
Q Consensus 285 ------------------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd-----~P~s~~~yvhR~GRaGr~-----G 332 (494)
.|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+|||||. |
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G 388 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYG 388 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCc
Confidence 788999999999999999999999998 77 688999999999999984 7
Q ss_pred eEEEEeccc
Q 042373 333 CAFRFISEE 341 (494)
Q Consensus 333 ~aitfv~~~ 341 (494)
.++.|+...
T Consensus 389 ~~ii~~~~~ 397 (737)
T PRK02362 389 EAVLLAKSY 397 (737)
T ss_pred eEEEEecCc
Confidence 788888664
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.8e-33 Score=321.13 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=166.5
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
|++.+.+.+++ +|..|||+|.++||.+++|+|++++||||||||++|++|+++++...........++++|||+|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 66666666555 79999999999999999999999999999999999999999999754322111337889999999999
Q ss_pred HHhh---------------------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 208 VRQQ---------------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 208 a~Qi---------------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+.|+ +||++|..++..... ...|+++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~-~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKF-REKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhH-HHHHhcCCE
Confidence 8764 688888777754321 125789999
Q ss_pred EEEcccchhcccCChhHHHHHHHhh----cCCCcEEEecCCCCh--HHHHHH----------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNI----RPDRQAVLFSPTFPP--RVEILA---------------------------- 282 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l----~~~~Q~ilfSAT~~~--~v~~l~---------------------------- 282 (494)
||+||+|.|++..+..++..++.++ ++..|++++|||+++ .+..+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 9999999999877666655554443 467899999999864 111100
Q ss_pred --------------------------Hh----------------------------------------------------
Q 042373 283 --------------------------RK---------------------------------------------------- 284 (494)
Q Consensus 283 --------------------------~~---------------------------------------------------- 284 (494)
..
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 00
Q ss_pred --cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCc----ceEEEEecc
Q 042373 285 --TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLK----SCAFRFISE 340 (494)
Q Consensus 285 --~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~----G~aitfv~~ 340 (494)
+|.++|||||+++++|||+++|++||+|+.|.+...|+||+||+||. +.++.++..
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 78999999999999999999999999999999999999999998874 235544443
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.8e-33 Score=305.36 Aligned_cols=200 Identities=19% Similarity=0.296 Sum_probs=161.3
Q ss_pred HHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--
Q 042373 135 TFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-- 211 (494)
Q Consensus 135 ~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-- 211 (494)
.|++ +||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.+ +..+|||+|+++|+.|+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHHH
Confidence 4544 89999999999999999999999999999999999999999842 34689999999999876
Q ss_pred -------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC--Chh
Q 042373 212 -------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG--FEP 252 (494)
Q Consensus 212 -------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~~ 252 (494)
+||+++...... ..+...++.+||+||||++.+|| |++
T Consensus 72 ~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~---~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 72 QLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL---NMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH---HHHhcCCCCEEEEeCCcccccccCccHH
Confidence 355554321111 12345689999999999999987 788
Q ss_pred HHHHHHHhh--cCCCcEEEecCCCChHHHHHHHh----------------------------------------------
Q 042373 253 QITRIVQNI--RPDRQAVLFSPTFPPRVEILARK---------------------------------------------- 284 (494)
Q Consensus 253 ~i~~Il~~l--~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------------------- 284 (494)
.+..+.... -+..++++||||.++.+......
T Consensus 149 ~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~I 228 (591)
T TIGR01389 149 EYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGI 228 (591)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEE
Confidence 776664432 23556999999999887643332
Q ss_pred -------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHH
Q 042373 285 -------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDY 321 (494)
Q Consensus 285 -------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~y 321 (494)
.|.++|||||+++++|||+|+|++||||++|.+.+.|
T Consensus 229 If~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y 308 (591)
T TIGR01389 229 IYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESY 308 (591)
T ss_pred EEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHH
Confidence 6899999999999999999999999999999999999
Q ss_pred HhhhccCCC---cceEEEEecccCHHHHHHH
Q 042373 322 VHHCCQSWL---KSCAFRFISEENAIYATDL 349 (494)
Q Consensus 322 vhR~GRaGr---~G~aitfv~~~~~~~~~~i 349 (494)
+||+||+|| .|.|++|+++.+...+..+
T Consensus 309 ~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 309 YQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred hhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 999999887 4579999888776544433
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-32 Score=307.44 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=181.1
Q ss_pred CcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 122 ~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
+|+++++++.+.+.|++.||.+|+|+|.++++. ++.|+|++++||||||||++|.+|+++++... +.++||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--------~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--------GGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--------CCeEEE
Confidence 688999999999999999999999999999996 88999999999999999999999999998642 568999
Q ss_pred EccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh
Q 042373 201 MAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m 245 (494)
|+||++||.|+ +||+++..++.... ..++++++||+||+|.+
T Consensus 74 l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS---SWIKDVKLVVADEIHLI 150 (720)
T ss_pred EeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc---hhhhcCCEEEEcCcCcc
Confidence 99999999987 78999877776432 35789999999999999
Q ss_pred cccCChhHHHHHHHhhcCCCcEEEecCCCChHH--H--------------------------------------------
Q 042373 246 FDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRV--E-------------------------------------------- 279 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v--~-------------------------------------------- 279 (494)
.+.++...++.++.++....|++++|||+++.- .
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 999999999999999999999999999974200 0
Q ss_pred --HHHH-----------------------------------------------------------h--------------
Q 042373 280 --ILAR-----------------------------------------------------------K-------------- 284 (494)
Q Consensus 280 --~l~~-----------------------------------------------------------~-------------- 284 (494)
.+.. .
T Consensus 231 ~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 231 VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 0000 0
Q ss_pred --------cCCccceeeccccccCCCCCCceEEEe-------cCCCC-CHhHHHhhhccCCC-----cceEEEEecccC
Q 042373 285 --------TNVCNLSIANSVRARGLDEKELELVIN-------FDAPN-DYEDYVHHCCQSWL-----KSCAFRFISEEN 342 (494)
Q Consensus 285 --------~g~~~ILVaTdv~~rGlDi~~v~~VIn-------yd~P~-s~~~yvhR~GRaGr-----~G~aitfv~~~~ 342 (494)
.|.++|||||+++++|+|+|.+++||. |+.|. +..+|+||+||||| .|.+++|++..+
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 788999999999999999999999993 66654 57799999999998 488999988654
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=2.1e-30 Score=289.58 Aligned_cols=206 Identities=16% Similarity=0.169 Sum_probs=171.5
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
+.|++++|++.+++.+.+.+|+ ++|+|.++++.+++|+|++++||||||||++|.+++++++.. +.++||
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~ 70 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIY 70 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEE
Confidence 3578899999999999999997 999999999999999999999999999999999999998854 458999
Q ss_pred EccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh
Q 042373 201 MAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m 245 (494)
++|+|+||.|+ +||+++..++.+. ...++++++||+||||++
T Consensus 71 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~---~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHD---PYIINDVGLIVADEIHII 147 (674)
T ss_pred EechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCC---hhHHhhcCEEEEecchhc
Confidence 99999999997 7899887776653 235889999999999999
Q ss_pred cccCChhHHHHHHHhh---cCCCcEEEecCCCChHHHHHHHh--------------------------------------
Q 042373 246 FDMGFEPQITRIVQNI---RPDRQAVLFSPTFPPRVEILARK-------------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l---~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------- 284 (494)
.+.++.+.++.++..+ +++.|+|++|||+++. ..++..
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~ 226 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDIN 226 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHH
Confidence 9988888888876654 5678999999998642 111110
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 227 ~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~ 306 (674)
T PRK01172 227 SLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEM 306 (674)
T ss_pred HHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHH
Confidence
Q ss_pred --cCCccceeeccccccCCCCCCceEEEecCC---------CCCHhHHHhhhccCCCc-----ceEEEEeccc
Q 042373 285 --TNVCNLSIANSVRARGLDEKELELVINFDA---------PNDYEDYVHHCCQSWLK-----SCAFRFISEE 341 (494)
Q Consensus 285 --~g~~~ILVaTdv~~rGlDi~~v~~VInyd~---------P~s~~~yvhR~GRaGr~-----G~aitfv~~~ 341 (494)
.|.++|||||+++++|+|+|+.. ||++|. |-+..+|.||+|||||. |.++.|+...
T Consensus 307 f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 307 FRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 67899999999999999999965 454443 45788999999999995 4577776544
No 46
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=3.3e-30 Score=260.93 Aligned_cols=259 Identities=27% Similarity=0.435 Sum_probs=216.5
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCC------C----
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPP------V---- 189 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~------~---- 189 (494)
++.|+++|.-++|-.+..++.+.-||.+|+++||.|+.|-|++..|.||||||-||.+|+++.+++..+ .
T Consensus 1 m~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~ 80 (725)
T KOG0349|consen 1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGG 80 (725)
T ss_pred CcchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCc
Confidence 357999999999999999999999999999999999999999999999999999999999998762100 0
Q ss_pred --------------------------------------------------------------------------------
Q 042373 190 -------------------------------------------------------------------------------- 189 (494)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (494)
T Consensus 81 ~~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~ 160 (725)
T KOG0349|consen 81 MADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTG 160 (725)
T ss_pred ccCCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 042373 190 -------------------------------------------------------------------------------- 189 (494)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (494)
T Consensus 161 ~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fN 240 (725)
T KOG0349|consen 161 LDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFN 240 (725)
T ss_pred ccccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEe
Confidence
Q ss_pred ----------------------------------------CCCCCCCeEEEEccchhHHHhh------------------
Q 042373 190 ----------------------------------------VPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 190 ----------------------------------------~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
.+..+.|.+||+-|+|||++|.
T Consensus 241 FG~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~ 320 (725)
T KOG0349|consen 241 FGSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRS 320 (725)
T ss_pred cCCCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhh
Confidence 0001245899999999999987
Q ss_pred ------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC----
Q 042373 212 ------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP---- 263 (494)
Q Consensus 212 ------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~---- 263 (494)
+||+|+.+.++.+ .+.|+.++|+|+||||.++..|+-+.|.++..++|.
T Consensus 321 lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd 397 (725)
T KOG0349|consen 321 LLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD 397 (725)
T ss_pred hhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC
Confidence 7999999999875 468999999999999999999999999999998864
Q ss_pred --CCcEEEecCCCCh-HHHHHHHh--------------------------------------------------------
Q 042373 264 --DRQAVLFSPTFPP-RVEILARK-------------------------------------------------------- 284 (494)
Q Consensus 264 --~~Q~ilfSAT~~~-~v~~l~~~-------------------------------------------------------- 284 (494)
..|.+++|||+.. ++..+..+
T Consensus 398 g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg 477 (725)
T KOG0349|consen 398 GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPG 477 (725)
T ss_pred CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccc
Confidence 4699999999642 22222211
Q ss_pred ------------------------------------------------------------------------------cC
Q 042373 285 ------------------------------------------------------------------------------TN 286 (494)
Q Consensus 285 ------------------------------------------------------------------------------~g 286 (494)
.+
T Consensus 478 ~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~ 557 (725)
T KOG0349|consen 478 QVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF 557 (725)
T ss_pred cCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc
Confidence 67
Q ss_pred CccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCC---CcceEEEEeccc----------------------
Q 042373 287 VCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEE---------------------- 341 (494)
Q Consensus 287 ~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitfv~~~---------------------- 341 (494)
.++.||||||++|||||.++-++||..+|.+...|+||+||.| |-|.+|+++...
T Consensus 558 dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~ 637 (725)
T KOG0349|consen 558 DVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLT 637 (725)
T ss_pred CeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccc
Confidence 7889999999999999999999999999999999999999955 579999998532
Q ss_pred ----------CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhccccc
Q 042373 342 ----------NAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNLGLGQ 381 (494)
Q Consensus 342 ----------~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~ 381 (494)
+...+.+++..|+...|.|.+.++-..+.|..|+..|...
T Consensus 638 e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdgkv~ygqk~ 687 (725)
T KOG0349|consen 638 EVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVYGQKN 687 (725)
T ss_pred cccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCCeEEecccc
Confidence 2336788888999999999888888888888887766444
No 47
>PRK09401 reverse gyrase; Reviewed
Probab=99.96 E-value=2.6e-29 Score=291.85 Aligned_cols=174 Identities=22% Similarity=0.287 Sum_probs=147.0
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
.|+ .||++|..++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+|||+|+.|+
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 578 8999999999999999999999999999995 67777665532 178999999999999997
Q ss_pred --------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc------
Q 042373 212 --------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD------ 247 (494)
Q Consensus 212 --------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~------ 247 (494)
+||++|.+++.. +...++++|||||||+|++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k~id 221 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSKNID 221 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhcccchh
Confidence 578888777652 3556799999999999996
Q ss_pred -----cCCh-hHHHHHHHhhcC------------------------CCcEEEecCCCChH-HHH-HHHh-----------
Q 042373 248 -----MGFE-PQITRIVQNIRP------------------------DRQAVLFSPTFPPR-VEI-LARK----------- 284 (494)
Q Consensus 248 -----~gf~-~~i~~Il~~l~~------------------------~~Q~ilfSAT~~~~-v~~-l~~~----------- 284 (494)
+||. +++..++..++. .+|+++||||+++. +.. +.+.
T Consensus 222 ~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 222 KLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVF 301 (1176)
T ss_pred hHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCccc
Confidence 7895 688888887764 78999999999864 322 1111
Q ss_pred ------------------------------------------------------------------------cCCcccee
Q 042373 285 ------------------------------------------------------------------------TNVCNLSI 292 (494)
Q Consensus 285 ------------------------------------------------------------------------~g~~~ILV 292 (494)
+|+++|||
T Consensus 302 ~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l~~~l~~F~~G~~~VLV 381 (1176)
T PRK09401 302 YLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGFERKFEKFEEGEVDVLV 381 (1176)
T ss_pred ccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcHHHHHHHHHCCCCCEEE
Confidence 78999999
Q ss_pred e----ccccccCCCCCC-ceEEEecCCCC------CHhHHHhhhcc
Q 042373 293 A----NSVRARGLDEKE-LELVINFDAPN------DYEDYVHHCCQ 327 (494)
Q Consensus 293 a----Tdv~~rGlDi~~-v~~VInyd~P~------s~~~yvhR~GR 327 (494)
| ||+++||||+|+ |++|||||+|. ..+.|.||+||
T Consensus 382 atas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r 427 (1176)
T PRK09401 382 GVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLR 427 (1176)
T ss_pred EecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHH
Confidence 9 699999999999 89999999998 67889999999
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=1.2e-28 Score=280.43 Aligned_cols=200 Identities=16% Similarity=0.214 Sum_probs=156.3
Q ss_pred CCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 127 GLTTKILETFSK-LNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 127 ~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+..+...+.+ ++| +|||+|.+||+.++.+ +|++++|+||||||.+|++|++..+.. +++++
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvl 504 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVA 504 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEE
Confidence 345566666644 788 5999999999999985 799999999999999999999988854 67899
Q ss_pred EEccchhHHHhhh--------------------hh----hHHHHHHHhcCc-----------ceecccceEEEEEcccch
Q 042373 200 VMAPTGELVRQQV--------------------RR----GRMIDLLCKNGV-----------KITNLTRVTYLVLDEADR 244 (494)
Q Consensus 200 Il~PTreLa~Qi~--------------------TP----grl~dll~~~~~-----------~~~~l~~l~~lVlDEaD~ 244 (494)
||+||++||.|+. ++ .+++.-+..+.. +.+.++++.+||+||+|+
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahr 584 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQR 584 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccc
Confidence 9999999999981 01 011111111110 124578999999999998
Q ss_pred hcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------------- 284 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------------- 284 (494)
+ .......+..++.++|+++||||+.+....++..
T Consensus 585 f-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~ 659 (926)
T TIGR00580 585 F-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLR 659 (926)
T ss_pred c-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHc
Confidence 4 2344556677788899999999977665444322
Q ss_pred --------------------------------------------------cCCccceeeccccccCCCCCCceEEEecCC
Q 042373 285 --------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDA 314 (494)
Q Consensus 285 --------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~ 314 (494)
.|+++|||||++++||||||++++||+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 799999999999999999999999999999
Q ss_pred CC-CHhHHHhhhccCCC---cceEEEEeccc
Q 042373 315 PN-DYEDYVHHCCQSWL---KSCAFRFISEE 341 (494)
Q Consensus 315 P~-s~~~yvhR~GRaGr---~G~aitfv~~~ 341 (494)
|. ...+|+||+||+|| .|.||+|+.+.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 86 67899999999555 78899998764
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=4.5e-28 Score=270.56 Aligned_cols=196 Identities=16% Similarity=0.209 Sum_probs=146.6
Q ss_pred HHHHHHH-HhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 130 TKILETF-SKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 130 ~~ll~~l-~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
..+.+.+ ..++| +||++|.+||+.|+.+ .|++++|+||||||++|++|++..+.. |.+++||+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lila 317 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMA 317 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEe
Confidence 3444544 56888 6999999999999987 489999999999999999999988743 77999999
Q ss_pred cchhHHHhhh--------------------hh----hHHHHHHHhcCc-----------ceecccceEEEEEcccchhcc
Q 042373 203 PTGELVRQQV--------------------RR----GRMIDLLCKNGV-----------KITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 203 PTreLa~Qi~--------------------TP----grl~dll~~~~~-----------~~~~l~~l~~lVlDEaD~ml~ 247 (494)
||++||.|++ ++ ...+..+..+.. ..+.+.++.+||+||+|++..
T Consensus 318 PT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~ 397 (681)
T PRK10917 318 PTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGV 397 (681)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhH
Confidence 9999999981 00 011111111100 113478999999999998631
Q ss_pred cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------------
Q 042373 248 MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------------- 284 (494)
Q Consensus 248 ~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------- 284 (494)
.....+......+++++||||..+....+...
T Consensus 398 -----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~ 472 (681)
T PRK10917 398 -----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGR 472 (681)
T ss_pred -----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCC
Confidence 22333444455689999999965543322211
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.|+.+|||||+++++|+|+|++++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 789999999999999999999999
Q ss_pred EEecCCCCC-HhHHHhhhccCCC---cceEEEEecc
Q 042373 309 VINFDAPND-YEDYVHHCCQSWL---KSCAFRFISE 340 (494)
Q Consensus 309 VInyd~P~s-~~~yvhR~GRaGr---~G~aitfv~~ 340 (494)
||+|+.|.. ...|.||+||+|| .|.||+|+..
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 999999984 6677777777555 7889999963
No 50
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=1.3e-28 Score=274.15 Aligned_cols=185 Identities=18% Similarity=0.157 Sum_probs=140.8
Q ss_pred CCCCCCChhHHHHHHHHHcCC-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE-EccchhHHHhh-----
Q 042373 139 LNHENPVAIQAPASALIISGL-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV-MAPTGELVRQQ----- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~gr-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI-l~PTreLa~Qi----- 211 (494)
.||+ |||||.++||.++.|+ ++++.+|||||||.+|.++++.. . .+...|+.|| ++|||||+.|+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~------~~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-E------IGAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-c------ccccccceEEEeCchHHHHHHHHHHHH
Confidence 6898 9999999999999998 57778999999999776555522 1 1122677777 55999999998
Q ss_pred ---------------------------------------------------------hhhhHHHHHHHhcCcc-------
Q 042373 212 ---------------------------------------------------------VRRGRMIDLLCKNGVK------- 227 (494)
Q Consensus 212 ---------------------------------------------------------~TPgrl~dll~~~~~~------- 227 (494)
+| .|++.++...
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT----~D~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGT----VDMIGSRLLFSGYGCGF 159 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEEC----HHHHcCCcccccccccc
Confidence 22 2444432210
Q ss_pred ------eecccceEEEEEcccchhcccCChhHHHHHHHhh--cCC---CcEEEecCCCChHHHHHHHh------------
Q 042373 228 ------ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RPD---RQAVLFSPTFPPRVEILARK------------ 284 (494)
Q Consensus 228 ------~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l--~~~---~Q~ilfSAT~~~~v~~l~~~------------ 284 (494)
...|+++++||||||| ++++|.+.+..|+..+ ++. +|+++||||++.++..++..
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~ 237 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK 237 (844)
T ss_pred ccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc
Confidence 0126889999999999 7899999999999975 332 69999999998765544322
Q ss_pred ------------------------------------------------------------------------c-------
Q 042373 285 ------------------------------------------------------------------------T------- 285 (494)
Q Consensus 285 ------------------------------------------------------------------------~------- 285 (494)
.
T Consensus 238 ~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 238 KRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred ccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHHhhHHHHHH
Confidence 1
Q ss_pred ----------CC-------ccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcce----EEEEecc
Q 042373 286 ----------NV-------CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC----AFRFISE 340 (494)
Q Consensus 286 ----------g~-------~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G~----aitfv~~ 340 (494)
+. ..|||||++++|||||+. ++|||+..| .+.|+||+||.||.|. .++++..
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 22 579999999999999986 899998877 6899999999766443 4777754
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=3.4e-28 Score=281.98 Aligned_cols=194 Identities=16% Similarity=0.185 Sum_probs=148.0
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 132 ILETFSKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 132 ll~~l~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
..+....++| .||++|.+||+.++.+ +|++++|+||||||.+|+.+++..+.. +.+++||+||+
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---------g~qvlvLvPT~ 659 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---------HKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---------CCeEEEEeCcH
Confidence 3444567888 7999999999999987 899999999999999999988876632 77999999999
Q ss_pred hHHHhhhh---------------------hh---HHHHHHHhcCc-----------ceecccceEEEEEcccchhcccCC
Q 042373 206 ELVRQQVR---------------------RG---RMIDLLCKNGV-----------KITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 206 eLa~Qi~T---------------------Pg---rl~dll~~~~~-----------~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
+||.|+.. .. ..+..+..+.. ..+.++++.+||+||+|++ |+
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrf---G~ 736 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRF---GV 736 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhc---ch
Confidence 99999810 00 00111111110 1134789999999999996 44
Q ss_pred hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------------------
Q 042373 251 EPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------------------- 284 (494)
Q Consensus 251 ~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------------------- 284 (494)
. ...++..++.++|+++||||+++.+..++..
T Consensus 737 ~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~v 814 (1147)
T PRK10689 737 R--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYY 814 (1147)
T ss_pred h--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEE
Confidence 3 2455677888999999999988776665543
Q ss_pred --------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCC-CHh
Q 042373 285 --------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPN-DYE 319 (494)
Q Consensus 285 --------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~-s~~ 319 (494)
.|+++|||||++++||||+|+|++||.++..+ +..
T Consensus 815 f~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla 894 (1147)
T PRK10689 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 (1147)
T ss_pred EECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH
Confidence 79999999999999999999999999433321 345
Q ss_pred HHHhhhccCCC---cceEEEEecc
Q 042373 320 DYVHHCCQSWL---KSCAFRFISE 340 (494)
Q Consensus 320 ~yvhR~GRaGr---~G~aitfv~~ 340 (494)
+|+||+||+|| .|.||+++..
T Consensus 895 q~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 895 QLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred HHHHHhhccCCCCCceEEEEEeCC
Confidence 79999999665 6788987754
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=9e-28 Score=266.21 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=145.0
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 130 TKILETFSKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 130 ~~ll~~l~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
..+...+..++| +||++|.+||+.|+.+ .+.+++|+||||||++|++|++..+.. +.+++||+|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlilaP 292 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMAP 292 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEECC
Confidence 344556678999 7999999999999987 268999999999999999999988753 678999999
Q ss_pred chhHHHhhhh---------------------hhH---HHHHHHhcCc-----------ceecccceEEEEEcccchhccc
Q 042373 204 TGELVRQQVR---------------------RGR---MIDLLCKNGV-----------KITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 204 TreLa~Qi~T---------------------Pgr---l~dll~~~~~-----------~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
|++||.|+.. ... .+..+..+.. ....+.++.+||+||+|++..
T Consensus 293 T~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~- 371 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGV- 371 (630)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccH-
Confidence 9999999810 000 1111111100 113578999999999998532
Q ss_pred CChhHHHHHHHhhc--CCCcEEEecCCCChHHHHHHHh------------------------------------------
Q 042373 249 GFEPQITRIVQNIR--PDRQAVLFSPTFPPRVEILARK------------------------------------------ 284 (494)
Q Consensus 249 gf~~~i~~Il~~l~--~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------ 284 (494)
.+...+..... ..+|+++||||..+....+...
T Consensus 372 ---~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g 448 (630)
T TIGR00643 372 ---EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKG 448 (630)
T ss_pred ---HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhC
Confidence 12222333322 2688999999964433222110
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.|+.+|||||+++++|+|+|+++
T Consensus 449 ~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~ 528 (630)
T TIGR00643 449 RQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNAT 528 (630)
T ss_pred CcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCc
Confidence 78999999999999999999999
Q ss_pred EEEecCCCC-CHhHHHhhhccCCC---cceEEEEec
Q 042373 308 LVINFDAPN-DYEDYVHHCCQSWL---KSCAFRFIS 339 (494)
Q Consensus 308 ~VInyd~P~-s~~~yvhR~GRaGr---~G~aitfv~ 339 (494)
+||+|+.|. ....|.||+||+|| .|.|++++.
T Consensus 529 ~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 529 VMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999997 56777778888665 788999983
No 53
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=8.7e-28 Score=258.16 Aligned_cols=204 Identities=21% Similarity=0.360 Sum_probs=167.3
Q ss_pred HHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-
Q 042373 134 ETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ- 211 (494)
Q Consensus 134 ~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi- 211 (494)
..|+. +||..+.|-|.++|..+++|+|++++.|||+||++||.+|.+-. ...+|||+|...|...+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHH
Confidence 44544 89999999999999999999999999999999999999999843 22799999999999765
Q ss_pred --------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC--Ch
Q 042373 212 --------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG--FE 251 (494)
Q Consensus 212 --------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~ 251 (494)
.+|+||..--.. +.+.-.++.++||||||++.+|| |+
T Consensus 75 ~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~---~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 75 DQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL---ELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH---HHHHhCCCceEEechHHHHhhcCCccC
Confidence 234333211000 01123468899999999999998 99
Q ss_pred hHHHHHHHhhc--CCCcEEEecCCCChHHHHHHHh---------------------------------------------
Q 042373 252 PQITRIVQNIR--PDRQAVLFSPTFPPRVEILARK--------------------------------------------- 284 (494)
Q Consensus 252 ~~i~~Il~~l~--~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------------- 284 (494)
+.+.++-.... ++..++.|+||.++.+..-+..
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~ 231 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSK 231 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCC
Confidence 98888755442 3789999999998887655443
Q ss_pred ----------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCH
Q 042373 285 ----------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDY 318 (494)
Q Consensus 285 ----------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~ 318 (494)
.+..+|+|||..+.+|||-|||++|||||+|.|+
T Consensus 232 ~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~ 311 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSI 311 (590)
T ss_pred CeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCH
Confidence 7899999999999999999999999999999999
Q ss_pred hHHHhhhccCCCcce---EEEEecccCHHHHHHHHHH
Q 042373 319 EDYVHHCCQSWLKSC---AFRFISEENAIYATDLVKA 352 (494)
Q Consensus 319 ~~yvhR~GRaGr~G~---aitfv~~~~~~~~~~i~~~ 352 (494)
+.|+|-+|||||.|. |++|+.+.|....+.+.+.
T Consensus 312 EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 312 ESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999988775 9999999998777666554
No 54
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=1e-27 Score=265.81 Aligned_cols=209 Identities=22% Similarity=0.260 Sum_probs=173.0
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
|++.+.+.++.. |.+|||.|.+|||.|++|+|++++||||||||+|.+||++..+....+ .....+-.+|||+|.|+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-GKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-CCCCCceEEEEeCcHHHH
Confidence 789999999888 999999999999999999999999999999999999999999988741 122236789999999999
Q ss_pred HHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 208 VRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 208 a~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
...+ +||+.|.-+|..... .-.|+++++||+||.|.+.+.
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~-r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKF-RELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHH-HHHhcCCcEEEeehhhhhhcc
Confidence 9998 799999777765433 346899999999999999976
Q ss_pred CChhHHHHHHHhhc---CCCcEEEecCCCChHHHHHHHh-----------------------------------------
Q 042373 249 GFEPQITRIVQNIR---PDRQAVLFSPTFPPRVEILARK----------------------------------------- 284 (494)
Q Consensus 249 gf~~~i~~Il~~l~---~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------- 284 (494)
.-..++.--++++. .+.|.|++|||..+. ...++.
T Consensus 165 KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 165 KRGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred ccchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHH
Confidence 65555544444432 388999999998743 233322
Q ss_pred ----------------------------------------------------------cCCccceeeccccccCCCCCCc
Q 042373 285 ----------------------------------------------------------TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v 306 (494)
.|..+.+|||+.+.-||||.+|
T Consensus 244 ~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~v 323 (814)
T COG1201 244 ERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDI 323 (814)
T ss_pred HHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCc
Confidence 8999999999999999999999
Q ss_pred eEEEecCCCCCHhHHHhhhccCCC----cceEEEEecc
Q 042373 307 ELVINFDAPNDYEDYVHHCCQSWL----KSCAFRFISE 340 (494)
Q Consensus 307 ~~VInyd~P~s~~~yvhR~GRaGr----~G~aitfv~~ 340 (494)
++||+|.-|.++..++||+||+|+ ...++.+...
T Consensus 324 dlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 324 DLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred eEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999876 2345555444
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=2.8e-28 Score=269.17 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHcCCCEEEEcCCCCCchhh---------hHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh-h
Q 042373 146 AIQAPASALIISGLDSVAITETGSGKTLA---------FLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR-G 215 (494)
Q Consensus 146 piQ~~aip~il~grdvi~~a~TGSGKTla---------fllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP-g 215 (494)
.+|.++++.++.|+|+|++|+||||||.+ |++|.+..+..-. ....+++++|++||||||.|+... +
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 48999999999999999999999999997 5666666553211 111256899999999999997211 0
Q ss_pred H----------------------HH-------HHH-HhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhc-CC
Q 042373 216 R----------------------MI-------DLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR-PD 264 (494)
Q Consensus 216 r----------------------l~-------dll-~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-~~ 264 (494)
. +. +++ .........|+++++|||||||++..++ +.+..++..+. ..
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~~~ 321 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHIDKI 321 (675)
T ss_pred HHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccch--hHHHHHHHHhhhhc
Confidence 0 00 011 1011111247789999999999998876 45666665543 44
Q ss_pred CcEEEecCCCChHHHHHHHh------------------------------------------------------------
Q 042373 265 RQAVLFSPTFPPRVEILARK------------------------------------------------------------ 284 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------------ 284 (494)
+|+++||||++.++..+.+.
T Consensus 322 rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVF 401 (675)
T PHA02653 322 RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVF 401 (675)
T ss_pred CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEE
Confidence 69999999997543322110
Q ss_pred ------------------------------------------cCCccceeeccccccCCCCCCceEEEecC---CCC---
Q 042373 285 ------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFD---APN--- 316 (494)
Q Consensus 285 ------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd---~P~--- 316 (494)
.|+.+||||||+++|||||++|++|||++ .|.
T Consensus 402 lpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 402 VASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred ECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCccc
Confidence 47789999999999999999999999999 676
Q ss_pred ------CHhHHHhhhccCCC--cceEEEEecccCH
Q 042373 317 ------DYEDYVHHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 317 ------s~~~yvhR~GRaGr--~G~aitfv~~~~~ 343 (494)
|..+|+||+||+|| .|.|+.|+++.+.
T Consensus 482 g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~ 516 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL 516 (675)
T ss_pred CcccccCHHHHHHhccCcCCCCCCeEEEEECHHHh
Confidence 88899999999887 8999999998764
No 56
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=2.5e-27 Score=280.78 Aligned_cols=188 Identities=19% Similarity=0.200 Sum_probs=147.2
Q ss_pred HHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 131 KILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 131 ~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.+.+.+++ +|| +||++|+++||.+++|+|++++||||||||++++++.+.... .++++|||+|||+|+.
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHHH
Confidence 34455655 899 699999999999999999999999999999966666554321 1678999999999999
Q ss_pred hh---------------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 210 QQ---------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 210 Qi---------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
|+ +||++|.+.+... . ..+++++||||||+
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~ 211 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVDA 211 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECcee
Confidence 98 5677776655431 1 26789999999999
Q ss_pred hcc-----------cCChhHHHH----HHH----------------------hhcCCCc-EEEecCCCChH--HHHHHHh
Q 042373 245 MFD-----------MGFEPQITR----IVQ----------------------NIRPDRQ-AVLFSPTFPPR--VEILARK 284 (494)
Q Consensus 245 ml~-----------~gf~~~i~~----Il~----------------------~l~~~~Q-~ilfSAT~~~~--v~~l~~~ 284 (494)
|++ +||.+++.. |+. .++..+| +++||||+++. +..+.+.
T Consensus 212 ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~ 291 (1638)
T PRK14701 212 FLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRE 291 (1638)
T ss_pred ccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhc
Confidence 987 589888864 432 2344566 57799999852 2222221
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~R~~~l 371 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAKNKKGF 371 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecchHHHHH
Confidence
Q ss_pred ----cCCccceeec----cccccCCCCCC-ceEEEecCCCC---CHhHHHhhh-------------ccCCCcce
Q 042373 285 ----TNVCNLSIAN----SVRARGLDEKE-LELVINFDAPN---DYEDYVHHC-------------CQSWLKSC 333 (494)
Q Consensus 285 ----~g~~~ILVaT----dv~~rGlDi~~-v~~VInyd~P~---s~~~yvhR~-------------GRaGr~G~ 333 (494)
.|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||+|+.|.
T Consensus 372 ~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 372 DLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred HHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 8999999999 59999999999 99999999999 888777765 77777765
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=5.2e-27 Score=264.49 Aligned_cols=182 Identities=17% Similarity=0.195 Sum_probs=149.2
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
+.+..+.+++++|++|+||||||.+|.+++++.... +.++||+.|||++|.|+
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 455566678999999999999999999999987621 45899999999999998
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccc-hhcccCChh-HHHHHHHhhcCCCcEEEecCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD-RMFDMGFEP-QITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD-~ml~~gf~~-~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+|||+|.+++... ..|+++++|||||+| ++++.+|.- .+..+...++++.|+|+||||
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 7999999988753 368999999999999 588776643 334566667889999999999
Q ss_pred CChHHH-HHHHh--------------------------------------------------------------------
Q 042373 274 FPPRVE-ILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 274 ~~~~v~-~l~~~-------------------------------------------------------------------- 284 (494)
++.... .+...
T Consensus 156 l~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~ 235 (819)
T TIGR01970 156 LDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDS 235 (819)
T ss_pred CCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCC
Confidence 875421 11100
Q ss_pred ------------------------cCCccceeeccccccCCCCCCceEEEecCCCCC------------------HhHHH
Q 042373 285 ------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPND------------------YEDYV 322 (494)
Q Consensus 285 ------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s------------------~~~yv 322 (494)
.|..+||||||++++||||++|++|||+++|.. ..+|+
T Consensus 236 ~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 315 (819)
T TIGR01970 236 DVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASAT 315 (819)
T ss_pred CcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHH
Confidence 678899999999999999999999999999853 34689
Q ss_pred hhhccCCC--cceEEEEecccCHH
Q 042373 323 HHCCQSWL--KSCAFRFISEENAI 344 (494)
Q Consensus 323 hR~GRaGr--~G~aitfv~~~~~~ 344 (494)
||+||+|| .|.||.|+++.+..
T Consensus 316 QR~GRAGR~~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 316 QRAGRAGRLEPGVCYRLWSEEQHQ 339 (819)
T ss_pred hhhhhcCCCCCCEEEEeCCHHHHH
Confidence 99999997 89999999986543
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=7.1e-27 Score=263.70 Aligned_cols=181 Identities=16% Similarity=0.220 Sum_probs=146.4
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
+.+..+.+++++|++|+||||||.+|.+|+++.... +.++||+.|||++|.|+
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 445566688999999999999999999999975321 34899999999999998
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccch-hcccCC-hhHHHHHHHhhcCCCcEEEecCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR-MFDMGF-EPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~-ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+|||+|.+++... ..|+++++|||||+|. .++..+ ...+..+++.++++.|+++||||
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecC
Confidence 7999999988753 3689999999999996 555443 23345566778889999999999
Q ss_pred CChHH-HHHHHh--------------------------------------------------------------------
Q 042373 274 FPPRV-EILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 274 ~~~~v-~~l~~~-------------------------------------------------------------------- 284 (494)
++... ..+...
T Consensus 159 l~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~ 238 (812)
T PRK11664 159 LDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVAS 238 (812)
T ss_pred CCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccC
Confidence 87542 111100
Q ss_pred ------------------------cCCccceeeccccccCCCCCCceEEEecCCCCC------------------HhHHH
Q 042373 285 ------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPND------------------YEDYV 322 (494)
Q Consensus 285 ------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s------------------~~~yv 322 (494)
.|+.+||||||++++||||++|++|||+++|.. ..+|+
T Consensus 239 ~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 318 (812)
T PRK11664 239 DVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMT 318 (812)
T ss_pred CceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhh
Confidence 678999999999999999999999999887753 35899
Q ss_pred hhhccCCC--cceEEEEecccCH
Q 042373 323 HHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 323 hR~GRaGr--~G~aitfv~~~~~ 343 (494)
||+||+|| .|.||.|+++.+.
T Consensus 319 QR~GRaGR~~~G~cyrL~t~~~~ 341 (812)
T PRK11664 319 QRAGRAGRLEPGICLHLYSKEQA 341 (812)
T ss_pred hhccccCCCCCcEEEEecCHHHH
Confidence 99999998 8999999997654
No 59
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.94 E-value=2.6e-26 Score=267.16 Aligned_cols=171 Identities=23% Similarity=0.295 Sum_probs=133.0
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 131 KILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 131 ~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.+.+.+.+.....||++|+.++|.++.|+|++++||||||||+ |++|++..+... ++++|||+|||+||.|
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~--------g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK--------GKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc--------CCeEEEEeCHHHHHHH
Confidence 3444555544447999999999999999999999999999996 778887766432 6899999999999999
Q ss_pred h----------------------------------------------hhhhHHHHHHHhcCcceeccc-ceEEEEEcccc
Q 042373 211 Q----------------------------------------------VRRGRMIDLLCKNGVKITNLT-RVTYLVLDEAD 243 (494)
Q Consensus 211 i----------------------------------------------~TPgrl~dll~~~~~~~~~l~-~l~~lVlDEaD 243 (494)
+ +||++|.+.+.. +. +++++||||||
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~-------l~~~~~~iVvDEaD 209 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE-------LGPKFDFIFVDDVD 209 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH-------hcCCCCEEEEeChH
Confidence 7 366666655543 22 78999999999
Q ss_pred hhcc-----------cCChhH-HHHHHH----------------------hhcCCCc--EEEecCC-CChHHHHHH-Hh-
Q 042373 244 RMFD-----------MGFEPQ-ITRIVQ----------------------NIRPDRQ--AVLFSPT-FPPRVEILA-RK- 284 (494)
Q Consensus 244 ~ml~-----------~gf~~~-i~~Il~----------------------~l~~~~Q--~ilfSAT-~~~~v~~l~-~~- 284 (494)
+|++ +||.++ +..|++ .++..+| +++|||| +|..+.... +.
T Consensus 210 ~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l 289 (1171)
T TIGR01054 210 ALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL 289 (1171)
T ss_pred hhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc
Confidence 9998 789874 666543 3445556 5679999 555433111 00
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 290 l~~~v~~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~~~l~ 369 (1171)
T TIGR01054 290 LGFEVGGGSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPKEDYE 369 (1171)
T ss_pred cceEecCccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCHHHHH
Confidence
Q ss_pred ---cCCccceee----ccccccCCCCCC-ceEEEecCCCCC
Q 042373 285 ---TNVCNLSIA----NSVRARGLDEKE-LELVINFDAPND 317 (494)
Q Consensus 285 ---~g~~~ILVa----Tdv~~rGlDi~~-v~~VInyd~P~s 317 (494)
.|+++|||| ||+++||||+|+ |++|||||+|..
T Consensus 370 ~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 370 KFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 799999999 599999999999 899999999975
No 60
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.94 E-value=1e-25 Score=214.37 Aligned_cols=155 Identities=46% Similarity=0.733 Sum_probs=141.4
Q ss_pred cccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 123 WRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 123 f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|+++++++.+.+.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++.++.... ...++++||++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEc
Confidence 78899999999999999999999999999999999999999999999999999999999987652 12378999999
Q ss_pred cchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc
Q 042373 203 PTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD 243 (494)
Q Consensus 203 PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD 243 (494)
||++|+.|+ +||+++.+++.... ..+.+++++|+||+|
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h 153 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVLDEAD 153 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEEeChH
Confidence 999999996 68999988887643 578899999999999
Q ss_pred hhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 244 ~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.+.+.+|...+..++..++..+|++++|||+++.+..++..
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~ 194 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARK 194 (203)
T ss_pred HhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHH
Confidence 99999999999999999999999999999999998887755
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=3.9e-26 Score=236.31 Aligned_cols=171 Identities=20% Similarity=0.193 Sum_probs=125.0
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh---------------------------
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV--------------------------- 212 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~--------------------------- 212 (494)
|+++.||||||||++|++|++..+.... +.+++|++|+|+|+.|+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~-------~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK-------ADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC-------CCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccC
Confidence 6899999999999999999998865322 568999999999999981
Q ss_pred ---------------------------hhhHHHHHHHhc-Ccceeccc--ceEEEEEcccchhcccCChhHHHHHHHhhc
Q 042373 213 ---------------------------RRGRMIDLLCKN-GVKITNLT--RVTYLVLDEADRMFDMGFEPQITRIVQNIR 262 (494)
Q Consensus 213 ---------------------------TPgrl~dll~~~-~~~~~~l~--~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~ 262 (494)
||+++...+..+ ......+. ..++||+||+|++.++++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 222222222110 00000011 23789999999999876544 666666664
Q ss_pred -CCCcEEEecCCCChHHHHHHHh---------------------------------------------------------
Q 042373 263 -PDRQAVLFSPTFPPRVEILARK--------------------------------------------------------- 284 (494)
Q Consensus 263 -~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------------------------- 284 (494)
.+.|+++||||+|..+..++..
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~ 232 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTV 232 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCH
Confidence 5789999999999777665543
Q ss_pred -------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHH
Q 042373 285 -------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDY 321 (494)
Q Consensus 285 -------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~y 321 (494)
.+..+|||||++++||+||+ +++||+++.| .++|
T Consensus 233 ~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~ 309 (358)
T TIGR01587 233 DRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSL 309 (358)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHH
Confidence 46678999999999999995 8899999877 7899
Q ss_pred HhhhccCCCcc-------eEEEEeccc
Q 042373 322 VHHCCQSWLKS-------CAFRFISEE 341 (494)
Q Consensus 322 vhR~GRaGr~G-------~aitfv~~~ 341 (494)
+||+||+||.| ..+.|....
T Consensus 310 iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 310 IQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHhccccCCCCCCCCCCeEEEEeecC
Confidence 99999977743 456565543
No 62
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.93 E-value=1.2e-25 Score=263.01 Aligned_cols=178 Identities=18% Similarity=0.196 Sum_probs=136.2
Q ss_pred EEcCCCCCchhhhHHHHHHHHHcCCCCC----CCCCCCeEEEEccchhHHHhh---------------------------
Q 042373 163 AITETGSGKTLAFLLPMLRHIWEQPPVV----PGDDSPVGLVMAPTGELVRQQ--------------------------- 211 (494)
Q Consensus 163 ~~a~TGSGKTlafllpil~~l~~~~~~~----~~~~~p~aLIl~PTreLa~Qi--------------------------- 211 (494)
++||||||||+||+||+|..++.+.... ....+.++|||+|||+|+.|+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999998653110 112368999999999999875
Q ss_pred ------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChh----HHHHHHHhhcC
Q 042373 212 ------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEP----QITRIVQNIRP 263 (494)
Q Consensus 212 ------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~----~i~~Il~~l~~ 263 (494)
+||++|..+|.... ...|++|++|||||+|.|++..+.. .+++|...++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 79999988877532 2468999999999999999764444 45555555567
Q ss_pred CCcEEEecCCCChH--HHHH-----------------------------------------------------------H
Q 042373 264 DRQAVLFSPTFPPR--VEIL-----------------------------------------------------------A 282 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~--v~~l-----------------------------------------------------------~ 282 (494)
+.|+|+||||+++. +..+ .
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il 238 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGIL 238 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHH
Confidence 88999999997541 1000 0
Q ss_pred H---h---------------------------------------------------------------------------
Q 042373 283 R---K--------------------------------------------------------------------------- 284 (494)
Q Consensus 283 ~---~--------------------------------------------------------------------------- 284 (494)
. .
T Consensus 239 ~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~ 318 (1490)
T PRK09751 239 DEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAI 318 (1490)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHH
Confidence 0 0
Q ss_pred ------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCc--ceEEEEecccC
Q 042373 285 ------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLK--SCAFRFISEEN 342 (494)
Q Consensus 285 ------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~--G~aitfv~~~~ 342 (494)
+|.+++||||+.+++||||++|++||||+.|.++.+|+||+||+||. |.+..++.+.+
T Consensus 319 IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~ 384 (1490)
T PRK09751 319 TEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT 384 (1490)
T ss_pred HHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc
Confidence 35678999999999999999999999999999999999999999984 44444444433
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.92 E-value=1.9e-24 Score=233.89 Aligned_cols=173 Identities=17% Similarity=0.105 Sum_probs=136.2
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------- 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------- 211 (494)
...|+++|.++++.++.+++.++++|||+|||+++... ...+.... ..++|||+||++|+.|+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~~-------~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLENY-------EGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhcC-------CCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 45899999999999999999999999999999976542 22222221 34899999999999998
Q ss_pred -----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEE
Q 042373 212 -----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAV 268 (494)
Q Consensus 212 -----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~i 268 (494)
+||+++..... ..+.++.+||+||||++.. ..+..++..+++.+|++
T Consensus 184 ~~~~~~~~i~~g~~~~~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~l 253 (501)
T PHA02558 184 FPREAMHKIYSGTAKDTDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKF 253 (501)
T ss_pred ccccceeEEecCcccCCCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccc----hhHHHHHHhhhccceEE
Confidence 45565543221 1367899999999999975 35677778887788999
Q ss_pred EecCCCChHHH-------------------HHHH-----------------------------------------h----
Q 042373 269 LFSPTFPPRVE-------------------ILAR-----------------------------------------K---- 284 (494)
Q Consensus 269 lfSAT~~~~v~-------------------~l~~-----------------------------------------~---- 284 (494)
+||||++.... .+.. +
T Consensus 254 GLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I 333 (501)
T PHA02558 254 GLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWI 333 (501)
T ss_pred EEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHH
Confidence 99999753210 0000 0
Q ss_pred ----------------------------------------------------------cCCccceeec-cccccCCCCCC
Q 042373 285 ----------------------------------------------------------TNVCNLSIAN-SVRARGLDEKE 305 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaT-dv~~rGlDi~~ 305 (494)
.+...||||| +++++|+|+|+
T Consensus 334 ~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ 413 (501)
T PHA02558 334 ANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKN 413 (501)
T ss_pred HHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccc
Confidence 4677899998 89999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhccCCCc
Q 042373 306 LELVINFDAPNDYEDYVHHCCQSWLK 331 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GRaGr~ 331 (494)
+++||++.++.+...|+||+||.+|.
T Consensus 414 ld~vIl~~p~~s~~~~~QriGR~~R~ 439 (501)
T PHA02558 414 LHHVIFAHPSKSKIIVLQSIGRVLRK 439 (501)
T ss_pred ccEEEEecCCcchhhhhhhhhccccC
Confidence 99999999999999999999997774
No 64
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=7.4e-24 Score=214.93 Aligned_cols=205 Identities=22% Similarity=0.331 Sum_probs=164.6
Q ss_pred HHHHHHHh-CCCCC-CChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 131 KILETFSK-LNHEN-PVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 131 ~ll~~l~~-~g~~~-ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
.+.++|++ +||.+ -++.|.+|+..+..+ +||.++.|||+||+|||.||.|.+ +.+.||++|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 45567766 57654 489999999999877 699999999999999999999965 4599999999999
Q ss_pred HHhh-----------------------------------------hhhhH-----HHHHHHhcCcceecccceEEEEEcc
Q 042373 208 VRQQ-----------------------------------------VRRGR-----MIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 208 a~Qi-----------------------------------------~TPgr-----l~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
...+ .||+. +.++|.. +.+-..+.|+|+||
T Consensus 74 IkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 74 IKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----HhhhceeeeEEech
Confidence 9765 23321 2233321 12345689999999
Q ss_pred cchhcccC--ChhHHHHHHH--hhcCCCcEEEecCCCChHHHHHHHh---------------------------------
Q 042373 242 ADRMFDMG--FEPQITRIVQ--NIRPDRQAVLFSPTFPPRVEILARK--------------------------------- 284 (494)
Q Consensus 242 aD~ml~~g--f~~~i~~Il~--~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------------- 284 (494)
||++.+|| |+++...+-. ..-++...+.++||-++.|++-+..
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDC 229 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhH
Confidence 99999998 8998776632 2335778899999999888654432
Q ss_pred -------------------------------------------------------------------------cCCccce
Q 042373 285 -------------------------------------------------------------------------TNVCNLS 291 (494)
Q Consensus 285 -------------------------------------------------------------------------~g~~~IL 291 (494)
.++++|+
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 7899999
Q ss_pred eeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc---eEEEEecccCHHHHHHHHH
Q 042373 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATDLVK 351 (494)
Q Consensus 292 VaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G---~aitfv~~~~~~~~~~i~~ 351 (494)
+||..+.+|+|-|+|++|||+++|.++.-|.|-.|||||.| .|-.+++.+|.+.++.|++
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred EEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999988866 4888888888877766654
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.90 E-value=9.5e-24 Score=238.97 Aligned_cols=219 Identities=23% Similarity=0.276 Sum_probs=169.1
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
....+..++.+.|+..|.++|.+|+-.+.+|+|+|++.+||||||.+|++||+++++.++ ..+||+|.||++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------~a~AL~lYPtnAL 127 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------SARALLLYPTNAL 127 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------CccEEEEechhhh
Confidence 455568888899999999999999999999999999999999999999999999998865 3489999999999
Q ss_pred HHhh-----------------------------------------hhhhHHHHHHHh-cCcceecccceEEEEEcccchh
Q 042373 208 VRQQ-----------------------------------------VRRGRMIDLLCK-NGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 208 a~Qi-----------------------------------------~TPgrl~dll~~-~~~~~~~l~~l~~lVlDEaD~m 245 (494)
|+.+ ++|..|..++.+ ......-+++++||||||+|-.
T Consensus 128 a~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 9887 334433332322 2222334678999999999954
Q ss_pred cccCChhHHHHHHHhh-------cCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 246 FDMGFEPQITRIVQNI-------RPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l-------~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
.-.|...|..+++++ +...|+|+.|||+...-+....-
T Consensus 208 -rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 208 -RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAES 286 (851)
T ss_pred -cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhh
Confidence 344666666555544 34789999999975443322221
Q ss_pred ---------------------------------------------------------------------------cCCcc
Q 042373 285 ---------------------------------------------------------------------------TNVCN 289 (494)
Q Consensus 285 ---------------------------------------------------------------------------~g~~~ 289 (494)
.|+..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 79999
Q ss_pred ceeeccccccCCCCCCceEEEecCCCC-CHhHHHhhhccCCCcc-eEEEEec----ccCHHHHHHHHHHHH
Q 042373 290 LSIANSVRARGLDEKELELVINFDAPN-DYEDYVHHCCQSWLKS-CAFRFIS----EENAIYATDLVKAFE 354 (494)
Q Consensus 290 ILVaTdv~~rGlDi~~v~~VInyd~P~-s~~~yvhR~GRaGr~G-~aitfv~----~~~~~~~~~i~~~l~ 354 (494)
++++|+.+.-||||.++..||++..|. +..+|+||.||+||.+ .++.++. +-+..+...-..+++
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999999 8999999999999977 4444443 224555555555555
No 66
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.90 E-value=5.6e-23 Score=223.81 Aligned_cols=143 Identities=20% Similarity=0.158 Sum_probs=109.7
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
+.+.....+.--..-.+..+|...+..+| |+|+|+++|||+|||++...-|+.|+...+ ..++|+++||+-|
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-------~~KiVF~aP~~pL 118 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-------KGKVVFLAPTRPL 118 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC-------cceEEEeeCCchH
Confidence 44444444433344578899999999999 999999999999999999999999986544 4689999999999
Q ss_pred HHhh-------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC
Q 042373 208 VRQQ-------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 208 a~Qi-------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
+.|+ +||..+..-|..+... .|+.+.++||||||+-....-
T Consensus 119 v~QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~--~ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 119 VNQQIACFSIYLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD--ELSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred HHHHHHHHhhccCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccccc--ccceEEEEEEccccccccccc
Confidence 9997 6888887777765432 389999999999999876554
Q ss_pred hhHHH-HHHHhhcCCCcEEEecCCCChHHHH
Q 042373 251 EPQIT-RIVQNIRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 251 ~~~i~-~Il~~l~~~~Q~ilfSAT~~~~v~~ 280 (494)
...|. ..+..-....|+|++|||.......
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~ 227 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPGSKLEQ 227 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCCccHHH
Confidence 55555 3444333444999999998765443
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=4e-23 Score=225.91 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=56.5
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|||+|..++|.++.|+ |+.++||+|||++|++|++.+... |+.++||+||++||.|.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qd 160 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERD 160 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHH
Confidence 566 79999999999999999 999999999999999999987653 77999999999999997
No 68
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=4.3e-23 Score=233.01 Aligned_cols=207 Identities=20% Similarity=0.287 Sum_probs=165.2
Q ss_pred HHHHH-HhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 132 ILETF-SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 132 ll~~l-~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
++..+ ..+|+....|-|.++|-.++.|+|+++..|||.||++||.||.+-. ++.+|||+|.+.|+..
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~D 319 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQD 319 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHHH
Confidence 44444 5589999999999999999999999999999999999999999832 5699999999999987
Q ss_pred h-----------------------------------------hhhhHHHHHHHhcCcceecccc---eEEEEEcccchhc
Q 042373 211 Q-----------------------------------------VRRGRMIDLLCKNGVKITNLTR---VTYLVLDEADRMF 246 (494)
Q Consensus 211 i-----------------------------------------~TPgrl~dll~~~~~~~~~l~~---l~~lVlDEaD~ml 246 (494)
+ .||+.+...-.-. ....+|.. +.++|+||||+..
T Consensus 320 Qv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 320 QVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred HHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEecHHHHhh
Confidence 6 2343322100000 00112344 8999999999999
Q ss_pred ccC--ChhHHHHHHHhh--cCCCcEEEecCCCChHHHHHHHh--------------------------------------
Q 042373 247 DMG--FEPQITRIVQNI--RPDRQAVLFSPTFPPRVEILARK-------------------------------------- 284 (494)
Q Consensus 247 ~~g--f~~~i~~Il~~l--~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------- 284 (494)
.|| |++...++.... -+...+|.++||.+..+..-+-.
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHH
Confidence 998 899888764433 23478999999998887544332
Q ss_pred ------------------------------------------------------cCCccceeeccccccCCCCCCceEEE
Q 042373 285 ------------------------------------------------------TNVCNLSIANSVRARGLDEKELELVI 310 (494)
Q Consensus 285 ------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VI 310 (494)
.++++|+|||=.+.+|||.|+|+.||
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 78999999999999999999999999
Q ss_pred ecCCCCCHhHHHhhhccCCCcce---EEEEecccCHHHHHHHHH
Q 042373 311 NFDAPNDYEDYVHHCCQSWLKSC---AFRFISEENAIYATDLVK 351 (494)
Q Consensus 311 nyd~P~s~~~yvhR~GRaGr~G~---aitfv~~~~~~~~~~i~~ 351 (494)
||.+|.+++.|.|-+|||||.|. |++|+...+...++.+..
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999775 999999887766655554
No 69
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.89 E-value=5.2e-23 Score=237.39 Aligned_cols=177 Identities=20% Similarity=0.294 Sum_probs=132.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEE--cc----chhHHHhh-------------
Q 042373 151 ASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVM--AP----TGELVRQQ------------- 211 (494)
Q Consensus 151 aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl--~P----TreLa~Qi------------- 211 (494)
.+..+..++.+|++|+||||||. .+|.+..-... +..+.|+ -| +++||.|+
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~--------g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR--------GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC--------CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 34455556677888999999999 67855332211 2222333 35 67888887
Q ss_pred -----------------hhhhHHHHHHHhcCcceecccceEEEEEcccc-hhcccCChhH-HHHHHHhhcCCCcEEEecC
Q 042373 212 -----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD-RMFDMGFEPQ-ITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD-~ml~~gf~~~-i~~Il~~l~~~~Q~ilfSA 272 (494)
+|||+|++.+... ..|+++++||||||| ++++++|... +..++.. +++.|+|+|||
T Consensus 152 Y~vrf~~~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILmSA 226 (1294)
T PRK11131 152 YKVRFNDQVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIITSA 226 (1294)
T ss_pred eeecCccccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEEeeC
Confidence 7999999998753 248999999999999 6899988653 4444332 35789999999
Q ss_pred CCChHHHHHHHh--------------------------------------------------------------------
Q 042373 273 TFPPRVEILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 273 T~~~~v~~l~~~-------------------------------------------------------------------- 284 (494)
|++.+ .+++.
T Consensus 227 Tid~e--~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae 304 (1294)
T PRK11131 227 TIDPE--RFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTAD 304 (1294)
T ss_pred CCCHH--HHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHH
Confidence 98632 11111
Q ss_pred ------------------------------cCCccceeeccccccCCCCCCceEEEecC---------------CC---C
Q 042373 285 ------------------------------TNVCNLSIANSVRARGLDEKELELVINFD---------------AP---N 316 (494)
Q Consensus 285 ------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd---------------~P---~ 316 (494)
.|..+||||||++++|||||+|++|||++ +| .
T Consensus 305 ~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~i 384 (1294)
T PRK11131 305 ALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPI 384 (1294)
T ss_pred HHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeec
Confidence 46789999999999999999999999986 34 4
Q ss_pred CHhHHHhhhccCCC--cceEEEEecccCHH
Q 042373 317 DYEDYVHHCCQSWL--KSCAFRFISEENAI 344 (494)
Q Consensus 317 s~~~yvhR~GRaGr--~G~aitfv~~~~~~ 344 (494)
|..+|+||+||+|| .|.||.|+++.+..
T Consensus 385 Skasa~QRaGRAGR~~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 385 SQASANQRKGRCGRVSEGICIRLYSEDDFL 414 (1294)
T ss_pred CHhhHhhhccccCCCCCcEEEEeCCHHHHH
Confidence 56899999999998 89999999986543
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.89 E-value=9.7e-23 Score=211.68 Aligned_cols=53 Identities=30% Similarity=0.391 Sum_probs=46.7
Q ss_pred hHHHHHHHHHcCCC--EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 147 IQAPASALIISGLD--SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 147 iQ~~aip~il~grd--vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|.++++.+..+.+ ++++||||||||++|++|++.. +..+++++||++|+.|+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~ 55 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQ 55 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHH
Confidence 59999999999975 7889999999999999999842 34689999999999986
No 71
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.1e-22 Score=209.22 Aligned_cols=127 Identities=19% Similarity=0.144 Sum_probs=96.3
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------- 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------- 211 (494)
.-+|..+|.......+.+ |++++.|||-|||+..++-+...+...+ + ++|+|+||+-|+.|+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-------~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-------G-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-------C-eEEEecCCchHHHHHHHHHHHHhC
Confidence 346777888877777755 9999999999999999998888775432 4 899999999999998
Q ss_pred -----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhc
Q 042373 212 -----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR 262 (494)
Q Consensus 212 -----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~ 262 (494)
+||..+..=|..+ .+++.++.++|+|||||-....-.-.|.+.+-.-.
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 6888776555543 56899999999999999764433334444333344
Q ss_pred CCCcEEEecCCCChHHH
Q 042373 263 PDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 263 ~~~Q~ilfSAT~~~~v~ 279 (494)
.++.++.+|||.....+
T Consensus 161 k~~~ilgLTASPGs~~e 177 (542)
T COG1111 161 KNPLILGLTASPGSDLE 177 (542)
T ss_pred cCceEEEEecCCCCCHH
Confidence 67789999999765443
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=3e-22 Score=223.22 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=80.5
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|..+++.++.|+ |+.++||+|||++|++|++..... |+.++|++||++||.|.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 677 89999999999999987 999999999999999999976654 77899999999999997
Q ss_pred -------------------------------hhhhHH-HHHHHhcC---cceecccceEEEEEcccchhc
Q 042373 212 -------------------------------VRRGRM-IDLLCKNG---VKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 212 -------------------------------~TPgrl-~dll~~~~---~~~~~l~~l~~lVlDEaD~ml 246 (494)
+||++| .|+|..+- .....++.+.|+||||||+|+
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 688888 55555321 111356889999999999977
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.88 E-value=1.8e-21 Score=220.96 Aligned_cols=123 Identities=21% Similarity=0.191 Sum_probs=90.4
Q ss_pred CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------
Q 042373 140 NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------- 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------- 211 (494)
+.-.|.++|..++..++.+ |+|+++|||+|||+++++++...+.. + +.++|||+||++|+.|+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-~-------~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-K-------GGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-C-------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3457899999999988877 99999999999999999999988732 1 56899999999999887
Q ss_pred ------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 212 ------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 212 ------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
+||..+...+..+ .+.+.++++|||||||++........+...+...
T Consensus 83 ~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 83 NIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred CCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 4666555444332 3467889999999999986443333333333333
Q ss_pred cCCCcEEEecCCC
Q 042373 262 RPDRQAVLFSPTF 274 (494)
Q Consensus 262 ~~~~Q~ilfSAT~ 274 (494)
.+..++++||||.
T Consensus 160 ~~~~~il~lTaTP 172 (773)
T PRK13766 160 AKNPLVLGLTASP 172 (773)
T ss_pred CCCCEEEEEEcCC
Confidence 3445567777764
No 74
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=219.11 Aligned_cols=141 Identities=24% Similarity=0.256 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHhCCCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 127 GLTTKILETFSKLNHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 127 ~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
.+.+.+.+.++..|+.+..+-|+.++...+ .++|+|+++|||||||+..++.+++.+.+. +.++|+|||+|
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--------~~k~vYivPlk 86 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--------GGKVVYIVPLK 86 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--------CCcEEEEeChH
Confidence 478888888888999888887777776655 559999999999999999999999999764 46899999999
Q ss_pred hHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC
Q 042373 206 ELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 206 eLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
+||.++ +||+++-.++.+.. .-+..+++||+||+|.+.+...
T Consensus 87 ALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~---~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 87 ALAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRP---SWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHHhhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCc---chhhcccEEEEeeeeecCCccc
Confidence 999997 68888744444332 2567899999999999988767
Q ss_pred hhHHHHHHHhhcC---CCcEEEecCCCChHH
Q 042373 251 EPQITRIVQNIRP---DRQAVLFSPTFPPRV 278 (494)
Q Consensus 251 ~~~i~~Il~~l~~---~~Q~ilfSAT~~~~v 278 (494)
.+.++.|+...+. ..|++.+|||+|+..
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN~~ 194 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPNAE 194 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCCHH
Confidence 7888888777654 379999999998753
No 75
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.87 E-value=1.2e-21 Score=180.03 Aligned_cols=127 Identities=34% Similarity=0.554 Sum_probs=111.5
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------- 211 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------- 211 (494)
||+|.++|+.+++|+|+++.||||+|||++|++|++..+.... ...+||++|+++|+.|+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-------~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-------DARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-------SSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-------CceEEEEeeccccccccccccccccccccc
Confidence 7999999999999999999999999999999999999987642 45899999999999998
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC-
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP- 263 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~- 263 (494)
+||.+|.+++.... .++.++++||+||+|.+..+++...+..|+..+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~ 150 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF 150 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCcccccccccHHHHHHHHHHHhcCC
Confidence 78999999888732 26777999999999999998889999999988843
Q ss_pred -CCcEEEecCCCChHHHHH
Q 042373 264 -DRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 264 -~~Q~ilfSAT~~~~v~~l 281 (494)
..|++++|||+++.++.+
T Consensus 151 ~~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 151 KNIQIILLSATLPSNVEKL 169 (169)
T ss_dssp TTSEEEEEESSSTHHHHHH
T ss_pred CCCcEEEEeeCCChhHhhC
Confidence 589999999999777654
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.86 E-value=7.2e-21 Score=212.40 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=90.1
Q ss_pred CCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-------
Q 042373 143 NPVAIQAPASALIISG---LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------- 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------- 212 (494)
.+|+.|++++..++.+ ++++++++||||||.+|+.++...+.. |.++|||+||++|+.|+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 6899999999999984 899999999999999999988777643 568999999999999981
Q ss_pred -----------hhh-HH--HHHHHhcCcc---------eecccceEEEEEcccchhcccCC---hhHHHH--HHHhhcCC
Q 042373 213 -----------RRG-RM--IDLLCKNGVK---------ITNLTRVTYLVLDEADRMFDMGF---EPQITR--IVQNIRPD 264 (494)
Q Consensus 213 -----------TPg-rl--~dll~~~~~~---------~~~l~~l~~lVlDEaD~ml~~gf---~~~i~~--Il~~l~~~ 264 (494)
++. +. +.-+..+... ...++++.+||+||+|.....+. .-+.+. ++.....+
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~ 294 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLEN 294 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccC
Confidence 221 11 1111111111 13478899999999997653321 111222 23334578
Q ss_pred CcEEEecCCCChHHH
Q 042373 265 RQAVLFSPTFPPRVE 279 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~ 279 (494)
.|++++|||.+.+..
T Consensus 295 ~~~il~SATps~~s~ 309 (679)
T PRK05580 295 IPVVLGSATPSLESL 309 (679)
T ss_pred CCEEEEcCCCCHHHH
Confidence 899999999765543
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.86 E-value=6.5e-21 Score=210.97 Aligned_cols=97 Identities=22% Similarity=0.368 Sum_probs=74.6
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|...++.+..| .|+.++||+|||++|++|++.+.+. ++.++|++||++||.|.
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHH
Confidence 565 6677776666665555 6999999999999999998877653 55699999999999987
Q ss_pred -----------------------------------hhhhHH-HHHHHhc---CcceecccceEEEEEcccchhcc
Q 042373 212 -----------------------------------VRRGRM-IDLLCKN---GVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 212 -----------------------------------~TPgrl-~dll~~~---~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+||++| .|+|... ......++.+.++|+||||.|+-
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 788888 5555321 11123578899999999999863
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.86 E-value=3.6e-21 Score=192.96 Aligned_cols=187 Identities=21% Similarity=0.300 Sum_probs=153.1
Q ss_pred ccCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 124 RQTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 124 ~~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
++++.+.+....|+. +..++..|.|..+|.+.|+|.|++++.|||.||++||.||.+.. ...+||+|
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~ 141 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVIC 141 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEeec
Confidence 456777887777765 56789999999999999999999999999999999999999853 45799999
Q ss_pred cchhHHHhh-----------------------------------------hhhhHHHH---HHHhcCcceecccceEEEE
Q 042373 203 PTGELVRQQ-----------------------------------------VRRGRMID---LLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 203 PTreLa~Qi-----------------------------------------~TPgrl~d---ll~~~~~~~~~l~~l~~lV 238 (494)
|...|+..+ .||.++.. ++++- .+.+....++++-
T Consensus 142 plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkl-eka~~~~~~~~ia 220 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKL-EKALEAGFFKLIA 220 (695)
T ss_pred hhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHH-HHHhhcceeEEEe
Confidence 999998765 46665421 22211 1234567889999
Q ss_pred EcccchhcccC--ChhHHHH--HHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 239 LDEADRMFDMG--FEPQITR--IVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 239 lDEaD~ml~~g--f~~~i~~--Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
+||+|+-..|| |+++... |+.+-=++..++.++||-+..+..-++.
T Consensus 221 idevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 221 IDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNE 300 (695)
T ss_pred ecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCCh
Confidence 99999999998 8887654 4555447888999999988777655543
Q ss_pred ----------------------------------------------------------------cCCccceeeccccccC
Q 042373 285 ----------------------------------------------------------------TNVCNLSIANSVRARG 300 (494)
Q Consensus 285 ----------------------------------------------------------------~g~~~ILVaTdv~~rG 300 (494)
.|+++|+|||-.+..|
T Consensus 301 dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMG 380 (695)
T ss_pred HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeeccc
Confidence 7899999999999999
Q ss_pred CCCCCceEEEecCCCCCHhHHHh
Q 042373 301 LDEKELELVINFDAPNDYEDYVH 323 (494)
Q Consensus 301 lDi~~v~~VInyd~P~s~~~yvh 323 (494)
||-|+|++|||..+|.+++.|.|
T Consensus 381 idkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHH
Confidence 99999999999999999999999
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.86 E-value=3.8e-21 Score=211.75 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=81.5
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|..+.+.++.|+ |+.++||+|||++|++|++-..+. |..++|++||++||.|.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 566 79999999999998887 999999999999999999644443 45699999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhcCc---ceecccceEEEEEcccchhcc
Q 042373 212 ------------------------------VRRGRM-IDLLCKNGV---KITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~~~---~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+||++| .|+|..+-. ....++.+.++|+||+|+|+-
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 799999 898876411 124678999999999999874
No 80
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.84 E-value=2e-20 Score=216.76 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=135.9
Q ss_pred CCCCCCChhHH---HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh----h
Q 042373 139 LNHENPVAIQA---PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ----Q 211 (494)
Q Consensus 139 ~g~~~ptpiQ~---~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q----i 211 (494)
..|....||.. +.+..+..++.+|++|+||||||. .+|.+..-... +. ....++.-|.|--|.. +
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-----~~-~~~I~~tQPRRlAA~svA~Rv 131 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-----GS-HGLIGHTQPRRLAARTVAQRI 131 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-----CC-CceEecCCccHHHHHHHHHHH
Confidence 44555566655 334445555677888999999998 56765432111 11 1233334465543333 3
Q ss_pred ------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc-hhcccCChhH-HHHHHH
Q 042373 212 ------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD-RMFDMGFEPQ-ITRIVQ 259 (494)
Q Consensus 212 ------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD-~ml~~gf~~~-i~~Il~ 259 (494)
+|+|+|++.+.... .|+++++||||||| ++++.+|.-. +..++.
T Consensus 132 A~elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~----~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 132 AEELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDR----FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred HHHhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCc----ccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 79999999887542 48999999999999 6999888654 555544
Q ss_pred hhcCCCcEEEecCCCChHHHHHHHh-------------------------------------------------------
Q 042373 260 NIRPDRQAVLFSPTFPPRVEILARK------------------------------------------------------- 284 (494)
Q Consensus 260 ~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------- 284 (494)
. +++.|+|+||||++.. .+++.
T Consensus 208 ~-rpdLKlIlmSATld~~--~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILV 284 (1283)
T TIGR01967 208 R-RPDLKIIITSATIDPE--RFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILI 284 (1283)
T ss_pred h-CCCCeEEEEeCCcCHH--HHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEE
Confidence 3 4688999999997531 11110
Q ss_pred -------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCC-----
Q 042373 285 -------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPN----- 316 (494)
Q Consensus 285 -------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~----- 316 (494)
.+..+|+|||+++++||||++|++|||++++.
T Consensus 285 FLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd 364 (1283)
T TIGR01967 285 FLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYS 364 (1283)
T ss_pred eCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccc
Confidence 23468999999999999999999999999543
Q ss_pred -------------CHhHHHhhhccCCC--cceEEEEecccCHH
Q 042373 317 -------------DYEDYVHHCCQSWL--KSCAFRFISEENAI 344 (494)
Q Consensus 317 -------------s~~~yvhR~GRaGr--~G~aitfv~~~~~~ 344 (494)
|..+|+||+||+|| .|.||.|+++.+..
T Consensus 365 ~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 365 YRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFN 407 (1283)
T ss_pred cccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHH
Confidence 56899999999998 89999999976543
No 81
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.84 E-value=3.6e-20 Score=204.43 Aligned_cols=235 Identities=19% Similarity=0.188 Sum_probs=167.3
Q ss_pred hCCCCCCChhHHHHHHHHHc-CCCEEEEcCCCCCchhhhHHHHHHHHHcCC-CCCCCCCCCeEEEEccchhHHHhh----
Q 042373 138 KLNHENPVAIQAPASALIIS-GLDSVAITETGSGKTLAFLLPMLRHIWEQP-PVVPGDDSPVGLVMAPTGELVRQQ---- 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~-grdvi~~a~TGSGKTlafllpil~~l~~~~-~~~~~~~~p~aLIl~PTreLa~Qi---- 211 (494)
-++|.++..||+.++|.+.. ..|+|+|||||||||-.|+|.||+.+.... ......++.++++|+|+++||..+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 47889999999999999885 479999999999999999999999997521 122233478999999999999987
Q ss_pred --------------------------------hhhhHHHHHHHhcCcc-eecccceEEEEEcccchhcccCChhHHHHHH
Q 042373 212 --------------------------------VRRGRMIDLLCKNGVK-ITNLTRVTYLVLDEADRMFDMGFEPQITRIV 258 (494)
Q Consensus 212 --------------------------------~TPgrl~dll~~~~~~-~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il 258 (494)
.||++. |++.+.+.. ..-++.|++||+||+|.|-+ ...+.++.|+
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiV 262 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIV 262 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHHHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHH
Confidence 577764 777664321 12267899999999996664 4567777777
Q ss_pred Hhhc-------CCCcEEEecCCCChHHHHHHHh-----------------------------------------------
Q 042373 259 QNIR-------PDRQAVLFSPTFPPRVEILARK----------------------------------------------- 284 (494)
Q Consensus 259 ~~l~-------~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------------- 284 (494)
.+.. ...+++.+|||+|+- +.+++.
T Consensus 263 aRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~k 341 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDK 341 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHH
Confidence 6553 356899999999874 344443
Q ss_pred ------------------------------------------------------------------------------cC
Q 042373 285 ------------------------------------------------------------------------------TN 286 (494)
Q Consensus 285 ------------------------------------------------------------------------------~g 286 (494)
.|
T Consensus 342 v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 342 VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 89
Q ss_pred CccceeeccccccCCCCCCceEEE----ecCCCC------CHhHHHhhhccCCC-----cceEEEEecccCHHHHHHHHH
Q 042373 287 VCNLSIANSVRARGLDEKELELVI----NFDAPN------DYEDYVHHCCQSWL-----KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 287 ~~~ILVaTdv~~rGlDi~~v~~VI----nyd~P~------s~~~yvhR~GRaGr-----~G~aitfv~~~~~~~~~~i~~ 351 (494)
.++||+||..+++|+++|.--++| -||.-. .+-+-+|..||||| .|.+|.+.+.+-..+ .+.
T Consensus 422 ~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~---Y~s 498 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH---YES 498 (1230)
T ss_pred CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH---HHH
Confidence 999999999999999999865444 244433 46677888888887 688886666543332 233
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHhcc
Q 042373 352 AFELSELVVRDDLKAVADSFIAKVNLG 378 (494)
Q Consensus 352 ~l~~~~~~vp~~l~~~~~~~~~~~~~~ 378 (494)
+|.....-=...+..+++.+..++..|
T Consensus 499 Ll~~~~piES~~~~~L~dnLnAEi~Lg 525 (1230)
T KOG0952|consen 499 LLTGQNPIESQLLPCLIDNLNAEISLG 525 (1230)
T ss_pred HHcCCChhHHHHHHHHHHhhhhheeec
Confidence 333221111234455666555554433
No 82
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.81 E-value=9.8e-20 Score=190.78 Aligned_cols=207 Identities=18% Similarity=0.247 Sum_probs=167.5
Q ss_pred CcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 122 ~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
..+++.+++.+.+.|+..||+.+.|+|..|+.. ++.|+|+++++.|+||||+.--+.-+..++.. |.+.|+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--------g~Kmlf 266 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--------GKKMLF 266 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--------CCeEEE
Confidence 347789999999999999999999999999988 67999999999999999999999888888753 668999
Q ss_pred EccchhHHHhh-------------------------------------------hhhhHHHHHHHhcCcceecccceEEE
Q 042373 201 MAPTGELVRQQ-------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 201 l~PTreLa~Qi-------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
|+|..+||+|- +|...+ |++-+.+ ..+.+|..|
T Consensus 267 LvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi-D~lLRtg---~~lgdiGtV 342 (830)
T COG1202 267 LVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI-DYLLRTG---KDLGDIGTV 342 (830)
T ss_pred EehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhH-HHHHHcC---CcccccceE
Confidence 99999999997 344444 4444432 368899999
Q ss_pred EEcccchhcccCChhHHHHHHHhhc---CCCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIR---PDRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~---~~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
|+||+|.|-+....+.+.-++.+++ ++.|.|.+|||+.+. +.++++
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ 421 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDERPVPLERHLVFARNESEKWD 421 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHH
Confidence 9999999888666666666665554 689999999998654 334443
Q ss_pred ------------------------------------------------------------------cCCccceeeccccc
Q 042373 285 ------------------------------------------------------------------TNVCNLSIANSVRA 298 (494)
Q Consensus 285 ------------------------------------------------------------------~g~~~ILVaTdv~~ 298 (494)
.+.+.++|+|..++
T Consensus 422 ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~ 501 (830)
T COG1202 422 IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA 501 (830)
T ss_pred HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh
Confidence 78899999999999
Q ss_pred cCCCCCCceEEEecCCC-----CCHhHHHhhhccCCC-----cceEEEEecccC
Q 042373 299 RGLDEKELELVINFDAP-----NDYEDYVHHCCQSWL-----KSCAFRFISEEN 342 (494)
Q Consensus 299 rGlDi~~v~~VInyd~P-----~s~~~yvhR~GRaGr-----~G~aitfv~~~~ 342 (494)
-|+|+|.-.+|+ =.+. -++.+|.|++||||| .|.+|.++.+.-
T Consensus 502 AGVDFPASQVIF-EsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 502 AGVDFPASQVIF-ESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred cCCCCchHHHHH-HHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 999999754433 1111 378899999999998 688999998753
No 83
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=3e-18 Score=189.72 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=59.9
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCC-CCHhHHHhhhccCCC---cceE-------EEEeccc--CHHHHHHHHHH
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAP-NDYEDYVHHCCQSWL---KSCA-------FRFISEE--NAIYATDLVKA 352 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P-~s~~~yvhR~GRaGr---~G~a-------itfv~~~--~~~~~~~i~~~ 352 (494)
+.+++||+|+++.+|||+|++++||+++.| .|..+|+||+||.+| .|.+ |+|++.+ +..++..-.++
T Consensus 541 ~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~f 620 (732)
T TIGR00603 541 PKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRF 620 (732)
T ss_pred CCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHH
Confidence 478999999999999999999999999998 599999999999554 3344 8999976 56677777777
Q ss_pred HHhcc
Q 042373 353 FELSE 357 (494)
Q Consensus 353 l~~~~ 357 (494)
|-..+
T Consensus 621 l~~qG 625 (732)
T TIGR00603 621 LVDQG 625 (732)
T ss_pred HHHCC
Confidence 76544
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=5.2e-17 Score=175.75 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=69.4
Q ss_pred EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh------------------hhh-HH--HHH
Q 042373 162 VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------------------RRG-RM--IDL 220 (494)
Q Consensus 162 i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------------------TPg-rl--~dl 220 (494)
+++|+||||||.+|+..+...+ .. |.++|||+|+++|+.|+. ++. |. +.-
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~~--------g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-AL--------GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hc--------CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHH
Confidence 4689999999999976654444 22 568999999999999981 121 11 111
Q ss_pred HHhcCcc---------eecccceEEEEEcccchhcccC---ChhHHHH--HHHhhcCCCcEEEecCCCChHHHH
Q 042373 221 LCKNGVK---------ITNLTRVTYLVLDEADRMFDMG---FEPQITR--IVQNIRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 221 l~~~~~~---------~~~l~~l~~lVlDEaD~ml~~g---f~~~i~~--Il~~l~~~~Q~ilfSAT~~~~v~~ 280 (494)
+..+... ...++++.+|||||+|.....+ ..-+... ++.....+.++|++|||.+.+...
T Consensus 72 ~~~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 72 VKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred HHcCCCCEEECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHH
Confidence 1111111 1247899999999999866433 1111221 222334688999999996654443
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=5.2e-17 Score=181.70 Aligned_cols=243 Identities=17% Similarity=0.179 Sum_probs=180.8
Q ss_pred CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC--CCCeEEEEc
Q 042373 126 TGLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD--DSPVGLVMA 202 (494)
Q Consensus 126 l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~--~~p~aLIl~ 202 (494)
..++.+-..++ .|+..+.+||....++.+.+ .++++|||||+|||...++-+|+.+-.......+. ...++++++
T Consensus 294 selP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 294 SELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred cCCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 34555555544 56778999999999999988 59999999999999999999999997765433222 134799999
Q ss_pred cchhHHHhh------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhc
Q 042373 203 PTGELVRQQ------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 203 PTreLa~Qi------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
|+.+|+..+ +||++. |.+.+++......+-++++|+||.|.+-
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 999999887 788874 7888876666667788999999999664
Q ss_pred ccCChhHHHHHHHhh-------cCCCcEEEecCCCChHH--HHHHHh---------------------------------
Q 042373 247 DMGFEPQITRIVQNI-------RPDRQAVLFSPTFPPRV--EILARK--------------------------------- 284 (494)
Q Consensus 247 ~~gf~~~i~~Il~~l-------~~~~Q~ilfSAT~~~~v--~~l~~~--------------------------------- 284 (494)
| ...+.++.|..+. ......+++|||+|+.. ..+.+.
T Consensus 451 D-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~ 529 (1674)
T KOG0951|consen 451 D-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRF 529 (1674)
T ss_pred c-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHH
Confidence 4 4567777776544 23688999999999753 332222
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 530 qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpyg 609 (1674)
T KOG0951|consen 530 QAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYG 609 (1674)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhcc
Confidence
Q ss_pred ---------------------cCCccceeeccccccCCCCCCceEEEe----cCC------CCCHhHHHhhhccCCC---
Q 042373 285 ---------------------TNVCNLSIANSVRARGLDEKELELVIN----FDA------PNDYEDYVHHCCQSWL--- 330 (494)
Q Consensus 285 ---------------------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd~------P~s~~~yvhR~GRaGr--- 330 (494)
.|.++|||+|-.++||++.|.-.++|- ||. +.++.+.+||.|||||
T Consensus 610 faIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 610 FAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred ceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCcc
Confidence 899999999999999999999777773 554 4578899999999998
Q ss_pred --cceEEEEecccCHHHHHHHHHHHHhccCcch---HHHHHHHHHHHHHHhcc
Q 042373 331 --KSCAFRFISEENAIYATDLVKAFELSELVVR---DDLKAVADSFIAKVNLG 378 (494)
Q Consensus 331 --~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp---~~l~~~~~~~~~~~~~~ 378 (494)
.|.+|..-...+.. ..+...+|.+| +.+..+++.+..++-.|
T Consensus 690 D~~gegiiit~~se~q------yyls~mn~qLpiesq~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 690 DTCGEGIIITDHSELQ------YYLSLMNQQLPIESQFVSRLADCLNAEIVLG 736 (1674)
T ss_pred CcCCceeeccCchHhh------hhHHhhhhcCCChHHHHHHhhhhhhhhhhcc
Confidence 45566554444433 34455566665 44566777666665544
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=1.4e-16 Score=174.66 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=108.2
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
...| .|...|++||-++..|-.|++.|+|.+|||+..-..+.-.-.+ +.+++|-+|.++|.+|-
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---------~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---------MTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---------ccceEecchhhhhccchHHHHHH
Confidence 4556 6899999999999999999999999999998866555433222 67899999999999996
Q ss_pred ----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 212 ----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 212 ----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
.|...|..+|.++.. -++++.+|||||+|.+.|....-..+.++-.+|+..++|+
T Consensus 363 tF~DvgLlTGDvqinPeAsCLIMTTEILRsMLYrgad---liRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~Il 439 (1248)
T KOG0947|consen 363 TFGDVGLLTGDVQINPEASCLIMTTEILRSMLYRGAD---LIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFIL 439 (1248)
T ss_pred hccccceeecceeeCCCcceEeehHHHHHHHHhcccc---hhhccceEEEeeeeecccccccccceeeeeeccccceEEE
Confidence 577888888887643 4788999999999999998766677777888999999999
Q ss_pred ecCCCChHHH
Q 042373 270 FSPTFPPRVE 279 (494)
Q Consensus 270 fSAT~~~~v~ 279 (494)
+|||.|+..+
T Consensus 440 LSATVPN~~E 449 (1248)
T KOG0947|consen 440 LSATVPNTLE 449 (1248)
T ss_pred EeccCCChHH
Confidence 9999998764
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.69 E-value=1e-15 Score=173.69 Aligned_cols=64 Identities=27% Similarity=0.174 Sum_probs=49.0
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
...|+|+|+.+......+.-+|+.||||+|||.+.++.+...+ ... ....++|.+||+++++|+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~~------~~~gi~~aLPT~Atan~m 347 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQG------LADSIIFALPTQATANAM 347 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-HhC------CCCeEEEECcHHHHHHHH
Confidence 4489999998865544566789999999999999877655433 221 145789999999999887
No 88
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.68 E-value=3.1e-16 Score=177.23 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=113.3
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--
Q 042373 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-- 211 (494)
Q Consensus 134 ~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-- 211 (494)
......+| .|.++|++++-++-.|..|+++||||||||+..-..+-..+.+ +-++++.+|.++|.+|.
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHH
Confidence 34456788 6999999999999999999999999999999988888777755 44699999999999997
Q ss_pred ------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 212 ------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 212 ------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
.|-..|..++.++. ..+..+.+||+||+|.|-|..-....+.++-.+
T Consensus 181 dl~~~fgdv~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~---~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 181 DLLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred HHHHHhhhhhhhccceecceeeCCCCceEEeeHHHHHHHhccCc---ccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 34466777777653 368899999999999999988788888889999
Q ss_pred cCCCcEEEecCCCChHHH
Q 042373 262 RPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 262 ~~~~Q~ilfSAT~~~~v~ 279 (494)
|...|+++||||+|+..+
T Consensus 258 P~~v~~v~LSATv~N~~E 275 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEE 275 (1041)
T ss_pred CCCCcEEEEeCCCCCHHH
Confidence 999999999999987643
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.67 E-value=2.6e-15 Score=162.23 Aligned_cols=214 Identities=18% Similarity=0.212 Sum_probs=157.9
Q ss_pred CCCHHHHHH-HHhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 127 GLTTKILET-FSKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 127 ~L~~~ll~~-l~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
.....++.. +..+.| ++|..|++++.-|... .+-++++.-|||||+..++.|+..+-. |-++.
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q~A 315 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQAA 315 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCeeE
Confidence 344555555 467888 7999999999999865 366999999999999999999998854 77999
Q ss_pred EEccchhHHHhhh---------------------hh---hHHHHHHHhcCcc-----------eecccceEEEEEcccch
Q 042373 200 VMAPTGELVRQQV---------------------RR---GRMIDLLCKNGVK-----------ITNLTRVTYLVLDEADR 244 (494)
Q Consensus 200 Il~PTreLa~Qi~---------------------TP---grl~dll~~~~~~-----------~~~l~~l~~lVlDEaD~ 244 (494)
.++||--||.|.. +. ..+...+..+... .+.++++.++|+||-||
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEecccc
Confidence 9999999999981 11 1122223332221 24588999999999998
Q ss_pred hcccCChhHHHHHHHhhcC-CCcEEEecCCCChHHHHHHHh---------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNIRP-DRQAVLFSPTFPPRVEILARK--------------------------------------- 284 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~~v~~l~~~--------------------------------------- 284 (494)
. .-+-+..+..-.. .+.+++||||.-|....+.-.
T Consensus 396 F-----GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei 470 (677)
T COG1200 396 F-----GVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEI 470 (677)
T ss_pred c-----cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHH
Confidence 3 3444444554445 678899999966655544433
Q ss_pred ------------------------------------------------------------cCCccceeeccccccCCCCC
Q 042373 285 ------------------------------------------------------------TNVCNLSIANSVRARGLDEK 304 (494)
Q Consensus 285 ------------------------------------------------------------~g~~~ILVaTdv~~rGlDi~ 304 (494)
.|+++|||||.|...|+|+|
T Consensus 471 ~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 471 AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCC
Confidence 78999999999999999999
Q ss_pred CceEEEecCCCCCHhHHHh----hhccCCCcceEEEEecccCHHHHHHHHHHHHh
Q 042373 305 ELELVINFDAPNDYEDYVH----HCCQSWLKSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 305 ~v~~VInyd~P~s~~~yvh----R~GRaGr~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
+.++.|.+|.-.=--.-+| |+||.+....|+.++.+....-.+.-.+.+..
T Consensus 551 nATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~ 605 (677)
T COG1200 551 NATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRE 605 (677)
T ss_pred CCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHh
Confidence 9999888887653223333 88888889999999988765555555555554
No 90
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1.4e-16 Score=178.16 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=98.6
Q ss_pred ccCCCCHHHHHHHH-----hCCCCCC---ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 124 RQTGLTTKILETFS-----KLNHENP---VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 124 ~~l~L~~~ll~~l~-----~~g~~~p---tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
+.|++..++...+. .+||..| ||+|.|+||.++.++|+|+.++||+|||++|++|++..++. +
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------G 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------c
Confidence 56789999998887 6899999 99999999999999999999999999999999999988864 2
Q ss_pred CeEEEEccchhHHHhh-------------------------------------hhhhHH-HHHHHhcCccee----cccc
Q 042373 196 PVGLVMAPTGELVRQQ-------------------------------------VRRGRM-IDLLCKNGVKIT----NLTR 233 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi-------------------------------------~TPgrl-~dll~~~~~~~~----~l~~ 233 (494)
..++||+|||+||.|+ +||+|| .|+|..+..... -.+.
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~ 215 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRG 215 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhccc
Confidence 2489999999999998 899999 999987532211 1246
Q ss_pred eEEEEEcccchhcc
Q 042373 234 VTYLVLDEADRMFD 247 (494)
Q Consensus 234 l~~lVlDEaD~ml~ 247 (494)
+.++||||||.||-
T Consensus 216 ~~~~IIDEADsmLi 229 (970)
T PRK12899 216 FYFAIIDEVDSILI 229 (970)
T ss_pred ccEEEEechhhhhh
Confidence 68999999999883
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=3.7e-16 Score=166.82 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=121.7
Q ss_pred CCCChhHHHHHHHHHc----CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh----
Q 042373 142 ENPVAIQAPASALIIS----GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---- 213 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~----grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---- 213 (494)
..|.++|.+++..+.. ++..+++.|||+|||..++..+-. + +..+||||||++|+.|...
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~-----------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L-----------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h-----------cCCEEEEECcHHHHHHHHHHHHH
Confidence 3699999999999998 899999999999999877664443 2 3349999999999999820
Q ss_pred -------hhHH----------------HHHHHhc-CcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 214 -------RGRM----------------IDLLCKN-GVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 214 -------Pgrl----------------~dll~~~-~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
.|.+ .+.+.+. .......++..+||+||||++....|. .+...+....-.++
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~~~~~LG 178 (442)
T COG1061 103 FLLLNDEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSAAYPRLG 178 (442)
T ss_pred hcCCccccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhcccceee
Confidence 0000 0111110 001112236889999999998865443 33333322222889
Q ss_pred ecCCCChHHH----HHHHh-------------------------------------------------------------
Q 042373 270 FSPTFPPRVE----ILARK------------------------------------------------------------- 284 (494)
Q Consensus 270 fSAT~~~~v~----~l~~~------------------------------------------------------------- 284 (494)
+|||++.... .+...
T Consensus 179 LTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (442)
T COG1061 179 LTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENE 258 (442)
T ss_pred eccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHH
Confidence 9999552220 00000
Q ss_pred -----------------------------------------------------------------------cCCccceee
Q 042373 285 -----------------------------------------------------------------------TNVCNLSIA 293 (494)
Q Consensus 285 -----------------------------------------------------------------------~g~~~ILVa 293 (494)
.|.+++||+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~ 338 (442)
T COG1061 259 ARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVT 338 (442)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 567999999
Q ss_pred ccccccCCCCCCceEEEecCCCCCHhHHHhhhcc
Q 042373 294 NSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ 327 (494)
Q Consensus 294 Tdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR 327 (494)
+.++..|+|+|+++++|......|...|+||+||
T Consensus 339 ~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR 372 (442)
T COG1061 339 VKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGR 372 (442)
T ss_pred eeeccceecCCCCcEEEEeCCCCcHHHHHHHhhh
Confidence 9999999999999999999999999999999999
No 92
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=2e-16 Score=169.99 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=104.6
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
++.|.|..+|.++-++..|++.|.|.+|||.+.-..|...+.. .-++++-+|.++|.+|-
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~DV 199 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFKDV 199 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhccc
Confidence 6899999999999999999999999999999988888888765 34799999999999996
Q ss_pred -----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 212 -----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
.|...|..+|.+++. -++.+.+||+||+|.|-|....-..+.-+-.+|.+...+++|||+
T Consensus 200 GLMTGDVTInP~ASCLVMTTEILRsMLYRGSE---vmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 200 GLMTGDVTINPDASCLVMTTEILRSMLYRGSE---VMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred ceeecceeeCCCCceeeeHHHHHHHHHhccch---HhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 467788888887654 588999999999999998653333333334568889999999999
Q ss_pred ChHHH
Q 042373 275 PPRVE 279 (494)
Q Consensus 275 ~~~v~ 279 (494)
|+..+
T Consensus 277 PNA~q 281 (1041)
T KOG0948|consen 277 PNARQ 281 (1041)
T ss_pred CCHHH
Confidence 98764
No 93
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.64 E-value=2.1e-15 Score=139.62 Aligned_cols=137 Identities=36% Similarity=0.486 Sum_probs=111.7
Q ss_pred hCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 138 KLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
..++..|+++|.+++..++.+ +.++++++||||||.+++.+++..+.... ...+||++||+.++.|+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-------CCcEEEEeCCHHHHHHHHHHHH
Confidence 457889999999999999999 99999999999999999999999886532 35799999999999887
Q ss_pred -----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHH
Q 042373 212 -----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITR 256 (494)
Q Consensus 212 -----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~ 256 (494)
+|++.+.+.+.... ....++.++|+||+|.+....+...+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 23333333333211 2455678999999999997678889999
Q ss_pred HHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 257 IVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 257 Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
++..+++..+++++|||.++.+...+..
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred HHHhCCccceEEEEecCCchhHHHHHHH
Confidence 9998888999999999999888777655
No 94
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.60 E-value=4.5e-14 Score=161.46 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=46.8
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEec
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFIS 339 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~ 339 (494)
+.++|||||++++||+|++.+++|||||+|.++..|+||+||.+| +|.+..++.
T Consensus 545 ~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 545 DGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred CCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 469999999999999999999999999999999999999999655 554444443
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.59 E-value=1.5e-14 Score=168.27 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=40.0
Q ss_pred cceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC
Q 042373 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL 330 (494)
Q Consensus 289 ~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr 330 (494)
.|+|+++++.+|+|+|.|.+||.+..+.|...|+||+||+.|
T Consensus 758 ~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 758 NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 589999999999999999999999999999999999999666
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.57 E-value=4.2e-14 Score=160.39 Aligned_cols=199 Identities=18% Similarity=0.239 Sum_probs=148.9
Q ss_pred CCHHHHHHHH-hCCCCCCChhHHHHHHHHHc----C--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 128 LTTKILETFS-KLNHENPVAIQAPASALIIS----G--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 128 L~~~ll~~l~-~~g~~~ptpiQ~~aip~il~----g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+......+. .++|+ -||-|..||..+.+ + .|-++|+.-|-|||-+.+=.++..++. |.++.|
T Consensus 579 ~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQVAv 648 (1139)
T COG1197 579 PDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQVAV 648 (1139)
T ss_pred CChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCeEEE
Confidence 3444444443 36674 59999999999874 3 489999999999999999888888865 789999
Q ss_pred EccchhHHHhh---------------------hhh---hHHHHHHHhcCc-----------ceecccceEEEEEcccchh
Q 042373 201 MAPTGELVRQQ---------------------VRR---GRMIDLLCKNGV-----------KITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 201 l~PTreLa~Qi---------------------~TP---grl~dll~~~~~-----------~~~~l~~l~~lVlDEaD~m 245 (494)
||||--||+|. .|. ...+.-|..+.. +-+.+.++.+||+||=||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqR- 727 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQR- 727 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhh-
Confidence 99999999998 011 111122222221 124588999999999987
Q ss_pred cccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------------
Q 042373 246 FDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------- 284 (494)
|.-.-..-++.++.+.-++-+|||.-|....++..
T Consensus 728 ----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~Rg 803 (1139)
T COG1197 728 ----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRG 803 (1139)
T ss_pred ----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcC
Confidence 34444556677788889999999977766666654
Q ss_pred -------------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCC
Q 042373 285 -------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAP 315 (494)
Q Consensus 285 -------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P 315 (494)
.|+++|||||.+..-|||||+++.+|..+.-
T Consensus 804 GQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 804 GQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred CEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccc
Confidence 8999999999999999999999998865544
Q ss_pred C-CHhHHHh---hhccCCCcceEEEEeccc
Q 042373 316 N-DYEDYVH---HCCQSWLKSCAFRFISEE 341 (494)
Q Consensus 316 ~-s~~~yvh---R~GRaGr~G~aitfv~~~ 341 (494)
. -..+.-| |+||+.+.+.||.++.+.
T Consensus 884 ~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 884 KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cccHHHHHHhccccCCccceEEEEEeecCc
Confidence 3 2334444 888888899999888764
No 97
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=1.5e-13 Score=154.06 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=77.2
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|...--++..|+ |+.++||+|||++|.+|++..++. |..++||+||++||.|.
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 554 68888877666666665 899999999999999999987754 45699999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhcCcceecc-----cceEEEEEcccchhc
Q 042373 212 ------------------------------VRRGRM-IDLLCKNGVKITNL-----TRVTYLVLDEADRMF 246 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~~~~~~~l-----~~l~~lVlDEaD~ml 246 (494)
+||++| .|+|..+- ..++ +.+.|+||||||.||
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~--~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNM--AFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCC--ccchHhhhccccceEEeccHhhhh
Confidence 799999 99998641 1233 689999999999987
No 98
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=7.2e-14 Score=155.74 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=53.8
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|++.|..+--++..|+ |+...||+|||++..+|++..... |..+-|++||--||.|-
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd 137 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRD 137 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhh
Confidence 565 79999998887777887 999999999999999999988865 66899999999999986
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.48 E-value=3.1e-13 Score=149.52 Aligned_cols=216 Identities=16% Similarity=0.106 Sum_probs=157.8
Q ss_pred CCCHHHHHHHHhCCCCCCChhHHHHH--HHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc
Q 042373 127 GLTTKILETFSKLNHENPVAIQAPAS--ALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT 204 (494)
Q Consensus 127 ~L~~~ll~~l~~~g~~~ptpiQ~~ai--p~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT 204 (494)
+++....-..+..|..+.+.+|..|+ |.++.++|+|..+||+.|||++.-+-|+..++.. +..++.+.|-
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~ 278 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPY 278 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecce
Confidence 33333444456789999999999985 7788999999999999999999999999888754 3346666665
Q ss_pred hhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC
Q 042373 205 GELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG 249 (494)
Q Consensus 205 reLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g 249 (494)
..-+..- ||-++-..+++. -...-.+..+.+|||||.|.+.+.+
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~-lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINS-LIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHH-HHhcCCccccCcEEEeeeeeeeccc
Confidence 4443322 333322211111 0111247789999999999999999
Q ss_pred ChhHHHHHHHhh-----cCCCcEEEecCCCChH--HHHHHHh--------------------------------------
Q 042373 250 FEPQITRIVQNI-----RPDRQAVLFSPTFPPR--VEILARK-------------------------------------- 284 (494)
Q Consensus 250 f~~~i~~Il~~l-----~~~~Q~ilfSAT~~~~--v~~l~~~-------------------------------------- 284 (494)
....++.++..+ ....|+|++|||+|+- ++.+...
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~ 437 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLY 437 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhh
Confidence 888888777655 2346799999998753 2222221
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 438 ~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl 517 (1008)
T KOG0950|consen 438 SSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVL 517 (1008)
T ss_pred hhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHH
Confidence
Q ss_pred ----------------------------cCCccceeeccccccCCCCCCceEEEecCC----CCCHhHHHhhhccCCCc-
Q 042373 285 ----------------------------TNVCNLSIANSVRARGLDEKELELVINFDA----PNDYEDYVHHCCQSWLK- 331 (494)
Q Consensus 285 ----------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~----P~s~~~yvhR~GRaGr~- 331 (494)
.|.+.|++||+.++.|++.|..+++|-+-. +.+..+|.||+|||||.
T Consensus 518 ~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 518 AKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred heeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcc
Confidence 789999999999999999999888886432 35788999999999986
Q ss_pred ----ceEEEEecccCHHHHHHHHH
Q 042373 332 ----SCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 332 ----G~aitfv~~~~~~~~~~i~~ 351 (494)
|.+|+++.+.+......+++
T Consensus 598 idT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 598 IDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred cccCcceEEEeeccchhHHHHHHh
Confidence 56999999988877765554
No 100
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.48 E-value=4.4e-13 Score=150.76 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=124.6
Q ss_pred HHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------------------
Q 042373 153 ALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------------------- 211 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------------------- 211 (494)
.++-...=+|++|+||||||...-.-+++..+. .+....+.=|.|--|..+
T Consensus 60 ~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--------~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR 131 (845)
T COG1643 60 KAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--------IAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR 131 (845)
T ss_pred HHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--------cCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE
Confidence 345556668899999999998554444443321 123444555776444443
Q ss_pred -------------hhhhHHHHHHHhcCcceecccceEEEEEcccch-hcccCC-hhHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 212 -------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR-MFDMGF-EPQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 212 -------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~-ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
.|.|.|...+.... .|+.+++||+||||. -++..| .-.+..++...+++-.+|++|||+..
T Consensus 132 fe~~~s~~Trik~mTdGiLlrei~~D~----~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~ 207 (845)
T COG1643 132 FESKVSPRTRIKVMTDGILLREIQNDP----LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA 207 (845)
T ss_pred eeccCCCCceeEEeccHHHHHHHhhCc----ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCH
Confidence 67888888887643 489999999999996 232222 22445556667778899999999764
Q ss_pred H-HHHHHHh-----------------------------------------------------------------------
Q 042373 277 R-VEILARK----------------------------------------------------------------------- 284 (494)
Q Consensus 277 ~-v~~l~~~----------------------------------------------------------------------- 284 (494)
+ ...+...
T Consensus 208 ~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~ 287 (845)
T COG1643 208 ERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDD 287 (845)
T ss_pred HHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCC
Confidence 3 1111111
Q ss_pred -----------------------cCCccceeeccccccCCCCCCceEEEecCC------------------CCCHhHHHh
Q 042373 285 -----------------------TNVCNLSIANSVRARGLDEKELELVINFDA------------------PNDYEDYVH 323 (494)
Q Consensus 285 -----------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~------------------P~s~~~yvh 323 (494)
.++-+|++||+++.-+|-|++|.+||.-++ |-|-.+.-|
T Consensus 288 ~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~Q 367 (845)
T COG1643 288 LEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQ 367 (845)
T ss_pred cEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhh
Confidence 344559999999999999999999997443 446778889
Q ss_pred hhccCCC--cceEEEEecccC
Q 042373 324 HCCQSWL--KSCAFRFISEEN 342 (494)
Q Consensus 324 R~GRaGr--~G~aitfv~~~~ 342 (494)
|.||||| .|.||-++++++
T Consensus 368 RaGRAGR~~pGicyRLyse~~ 388 (845)
T COG1643 368 RAGRAGRTGPGICYRLYSEED 388 (845)
T ss_pred hccccccCCCceEEEecCHHH
Confidence 9999998 799999999843
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.47 E-value=2.4e-12 Score=128.96 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=132.7
Q ss_pred CCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHH
Q 042373 143 NPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMI 218 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~ 218 (494)
++||.|..+-..++ +.+|+|++|-||+|||- .+.+.++..+++ |..+.|.+|....|..+.+ ||.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTE-Mif~~i~~al~~--------G~~vciASPRvDVclEl~~--Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTE-MIFQGIEQALNQ--------GGRVCIASPRVDVCLELYP--RLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchh-hhHHHHHHHHhc--------CCeEEEecCcccchHHHHH--HHH
Confidence 78999988766554 56899999999999996 455666666654 7789999999888887643 444
Q ss_pred HHHHhcCcceec----------------------ccceEEEEEcccchhcccCChhHHHHHH-HhhcCCCcEEEecCCCC
Q 042373 219 DLLCKNGVKITN----------------------LTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 219 dll~~~~~~~~~----------------------l~~l~~lVlDEaD~ml~~gf~~~i~~Il-~~l~~~~Q~ilfSAT~~ 275 (494)
+.+..-....+. -..++++|+||+|..--.. -+.+..-+ +..+...-+|++|||.+
T Consensus 166 ~aF~~~~I~~Lyg~S~~~fr~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~~g~~IylTATp~ 244 (441)
T COG4098 166 QAFSNCDIDLLYGDSDSYFRAPLVVATTHQLLRFKQAFDLLIIDEVDAFPFSD-DQSLQYAVKKARKKEGATIYLTATPT 244 (441)
T ss_pred HhhccCCeeeEecCCchhccccEEEEehHHHHHHHhhccEEEEeccccccccC-CHHHHHHHHHhhcccCceEEEecCCh
Confidence 444322111100 1357899999999765222 23333333 33456678999999988
Q ss_pred hHHHHHHHh-----------------------------------------------------------------------
Q 042373 276 PRVEILARK----------------------------------------------------------------------- 284 (494)
Q Consensus 276 ~~v~~l~~~----------------------------------------------------------------------- 284 (494)
+..+.-+..
T Consensus 245 k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~ 324 (441)
T COG4098 245 KKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAA 324 (441)
T ss_pred HHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHH
Confidence 777655443
Q ss_pred ----------------------------cCCccceeeccccccCCCCCCceEEE-ecCCC-CCHhHHHhhhccCCC----
Q 042373 285 ----------------------------TNVCNLSIANSVRARGLDEKELELVI-NFDAP-NDYEDYVHHCCQSWL---- 330 (494)
Q Consensus 285 ----------------------------~g~~~ILVaTdv~~rGlDi~~v~~VI-nyd~P-~s~~~yvhR~GRaGr---- 330 (494)
+|+..+||+|.++.||+-+|+|+++| +-.-+ -+-...||-.||.||
T Consensus 325 lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~ 404 (441)
T COG4098 325 LKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLER 404 (441)
T ss_pred HHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcC
Confidence 89999999999999999999999855 33222 367788998888777
Q ss_pred -cceEEEEecccCH
Q 042373 331 -KSCAFRFISEENA 343 (494)
Q Consensus 331 -~G~aitfv~~~~~ 343 (494)
.|..+.|-.....
T Consensus 405 PtGdv~FFH~G~sk 418 (441)
T COG4098 405 PTGDVLFFHYGKSK 418 (441)
T ss_pred CCCcEEEEeccchH
Confidence 5777766544443
No 102
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.46 E-value=3.3e-13 Score=149.98 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=58.0
Q ss_pred cCCccceeeccccccCCCCCCceEEEecC-----CCCCHhHHHhhhccCCC--cceEEEEecccCHHHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFD-----APNDYEDYVHHCCQSWL--KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd-----~P~s~~~yvhR~GRaGr--~G~aitfv~~~~~~~~~~i~~ 351 (494)
.|.+.|||||++++||+|+|++++||++| +|.+..+|+||+||+|| .|.+++|++..+......|.+
T Consensus 490 ~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 490 LGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred cCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 57889999999999999999999999998 89999999999999887 789999999876544444443
No 103
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=5e-13 Score=149.66 Aligned_cols=96 Identities=23% Similarity=0.289 Sum_probs=77.4
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|....-++..|+ |+.++||+|||+++.+|++-..+. |..+-|++||++||.|.
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 565 79999998887777775 999999999999999999744432 33577999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhcCc---ceecccceEEEEEcccchhc
Q 042373 212 ------------------------------VRRGRM-IDLLCKNGV---KITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~~~---~~~~l~~l~~lVlDEaD~ml 246 (494)
+||++| .|+|..+-. ....++.+.|+||||||.|+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 799999 899875421 11246889999999999977
No 104
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.37 E-value=9e-12 Score=130.95 Aligned_cols=83 Identities=12% Similarity=0.132 Sum_probs=64.1
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCC-----CCCHhHHHhhhccCCC--cceEEEEeccc---------CHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDA-----PNDYEDYVHHCCQSWL--KSCAFRFISEE---------NAIYATD 348 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~-----P~s~~~yvhR~GRaGr--~G~aitfv~~~---------~~~~~~~ 348 (494)
.|.++|||.-+++-.|||+|.|.+|..+|. ..|-.+.||-+|||-| .|.+|.+.+.- +...-+.
T Consensus 494 ~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ET~RRR~ 573 (663)
T COG0556 494 LGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETERRRE 573 (663)
T ss_pred cCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998874 5788999999999544 79988776542 2233444
Q ss_pred HHHHHHhccCcchHHHHHH
Q 042373 349 LVKAFELSELVVRDDLKAV 367 (494)
Q Consensus 349 i~~~l~~~~~~vp~~l~~~ 367 (494)
+...++.....+|..+.+-
T Consensus 574 iQ~~yN~~hgItP~ti~K~ 592 (663)
T COG0556 574 IQMAYNEEHGITPQTIKKK 592 (663)
T ss_pred HHHHHHHhcCCCchhhhhh
Confidence 5555666677778666443
No 105
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=136.97 Aligned_cols=126 Identities=20% Similarity=0.168 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
.|..+|...+-.+-.+..++++|||.+|||.+-...|=.++.... ...+|+++||.+|+.|+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-------~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-------SDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-------CCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 688999999999999999999999999999876655544443321 55799999999999998
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCC
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 264 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~ 264 (494)
+-|..+-.+|...........+++|+|+||+|.+-.+.-.-..+.++..+ .
T Consensus 584 t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~ 661 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--P 661 (1330)
T ss_pred ccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--C
Confidence 22444444444321122235789999999999987654222333344433 5
Q ss_pred CcEEEecCCCChH
Q 042373 265 RQAVLFSPTFPPR 277 (494)
Q Consensus 265 ~Q~ilfSAT~~~~ 277 (494)
+.++.+|||+.+.
T Consensus 662 CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 662 CPFLVLSATIGNP 674 (1330)
T ss_pred CCeeEEecccCCH
Confidence 7899999998653
No 106
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.32 E-value=1.8e-11 Score=131.83 Aligned_cols=181 Identities=16% Similarity=0.194 Sum_probs=120.8
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
+.+..+-..+-+|++++||||||.- +| +.+.+..-. . ....-+.-|.|--|..+
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~~---~-~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGFA---S-SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcccc---c-CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 3455556677889999999999973 33 223332111 1 12244555777655554
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhc-ccC-ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMF-DMG-FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml-~~g-f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.|-|-|+..+.... .|+..+++||||||.=. ... ..-.+.+|++. +++-.+|++|||
T Consensus 130 ~IRFed~ts~~TrikymTDG~LLRE~l~Dp----~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIimSAT 204 (674)
T KOG0922|consen 130 TIRFEDSTSKDTRIKYMTDGMLLREILKDP----LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLIIMSAT 204 (674)
T ss_pred EEEecccCCCceeEEEecchHHHHHHhcCC----ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEEEeee
Confidence 46677766655432 58999999999999611 000 11123333332 456789999999
Q ss_pred CChHHH-HHHHh--------------------------------------------------------------------
Q 042373 274 FPPRVE-ILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 274 ~~~~v~-~l~~~-------------------------------------------------------------------- 284 (494)
+..+.- .+...
T Consensus 205 lda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~ 284 (674)
T KOG0922|consen 205 LDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKS 284 (674)
T ss_pred ecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 753221 11110
Q ss_pred -----------------------------cCCccceeeccccccCCCCCCceEEEecCC------------------CCC
Q 042373 285 -----------------------------TNVCNLSIANSVRARGLDEKELELVINFDA------------------PND 317 (494)
Q Consensus 285 -----------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~------------------P~s 317 (494)
.|..+|+++|+++.-.|-|++|.+||.-++ |-|
T Consensus 285 ~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~IS 364 (674)
T KOG0922|consen 285 LPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPIS 364 (674)
T ss_pred ccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEech
Confidence 578889999999999999999999997543 557
Q ss_pred HhHHHhhhccCCC--cceEEEEecccCH
Q 042373 318 YEDYVHHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 318 ~~~yvhR~GRaGr--~G~aitfv~~~~~ 343 (494)
..+-.||.||||| .|.||.++++++.
T Consensus 365 kasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 365 KASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred HHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 8888999999998 7899999998754
No 107
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.8e-11 Score=128.32 Aligned_cols=210 Identities=20% Similarity=0.200 Sum_probs=160.5
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCC-CCCc--hhhhHHHHHHHHHcCCC----------------------CCCCCCC
Q 042373 141 HENPVAIQAPASALIISGLDSVAITET-GSGK--TLAFLLPMLRHIWEQPP----------------------VVPGDDS 195 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~T-GSGK--Tlafllpil~~l~~~~~----------------------~~~~~~~ 195 (494)
=..+|+.|.+.+-.+.+.+|++..-.| +.|+ +-.|.+-+|.|++..+. .++|...
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 356899999999999999999876333 3455 56788999999874211 1345568
Q ss_pred CeEEEEccchhHHHhh----------------------------------------------------------------
Q 042373 196 PVGLVMAPTGELVRQQ---------------------------------------------------------------- 211 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi---------------------------------------------------------------- 211 (494)
|++|||||+|+-|..+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 9999999999999887
Q ss_pred -----------------hhhhHHHHHHHhcCcce---ecccceEEEEEcccchhcccCChhHHHHHHHhhcCC-------
Q 042373 212 -----------------VRRGRMIDLLCKNGVKI---TNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD------- 264 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~---~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~------- 264 (494)
|.|-.|..++.+.+.+. --|+.|.++|+|.||.|+ |+.|..+..|+.++...
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccCC
Confidence 67777777776332222 237899999999999888 67789999999887421
Q ss_pred -----------------CcEEEecCCCChHHHHHHHh-------------------------------------------
Q 042373 265 -----------------RQAVLFSPTFPPRVEILARK------------------------------------------- 284 (494)
Q Consensus 265 -----------------~Q~ilfSAT~~~~v~~l~~~------------------------------------------- 284 (494)
||+++||+-..+.+..+...
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 69999999877776665543
Q ss_pred -------------------------------------------------------------------cCCccceeecccc
Q 042373 285 -------------------------------------------------------------------TNVCNLSIANSVR 297 (494)
Q Consensus 285 -------------------------------------------------------------------~g~~~ILVaTdv~ 297 (494)
.|...+|+.|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 7889999999876
Q ss_pred --ccCCCCCCceEEEecCCCCCHhHHHh---hhccCCCc-------ceEEEEecccCHHHHHHHHH
Q 042373 298 --ARGLDEKELELVINFDAPNDYEDYVH---HCCQSWLK-------SCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 298 --~rGlDi~~v~~VInyd~P~s~~~yvh---R~GRaGr~-------G~aitfv~~~~~~~~~~i~~ 351 (494)
.|..+|.+|..||.|.+|+++..|.- +.+|+... -.|..+++..+.-.+..|+-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 57899999999999999999887754 66673333 35777888887766665553
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=3.4e-11 Score=135.09 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=76.3
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|...--.+..|+ |+.++||.|||++|.+|++.+.+. |..+.||+||++||.|.
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 555 68888886655555554 899999999999999999987764 45599999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhc-Ccc--eecccceEEEEEcccchhcc
Q 042373 212 ------------------------------VRRGRM-IDLLCKN-GVK--ITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~-~~~--~~~l~~l~~lVlDEaD~ml~ 247 (494)
+||++| .|+|..+ ... -.-.+.+.++||||+|.||-
T Consensus 147 ~~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HHhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 799998 8888764 110 11237889999999999873
No 109
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.31 E-value=7.5e-12 Score=115.81 Aligned_cols=116 Identities=20% Similarity=0.112 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHHc-------CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----
Q 042373 143 NPVAIQAPASALIIS-------GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~-------grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---- 211 (494)
+|.+.|.+++-.+.. .+.+++.++||||||.+++..+.+.. . .+||++|+..|+.|.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C-EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c-ceeEecCHHHHHHHHHHHH
Confidence 578999999999984 68999999999999999886555443 2 799999999999997
Q ss_pred ----------------------------------------------hhhhHHHHHHHhcCc--------ceecccceEEE
Q 042373 212 ----------------------------------------------VRRGRMIDLLCKNGV--------KITNLTRVTYL 237 (494)
Q Consensus 212 ----------------------------------------------~TPgrl~dll~~~~~--------~~~~l~~l~~l 237 (494)
.|...+......... .........+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 233334333332110 01223467899
Q ss_pred EEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
|+||||++....- ...++. .+...+|+||||+.
T Consensus 151 I~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9999999875431 344444 46777899999975
No 110
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.29 E-value=2e-11 Score=130.88 Aligned_cols=182 Identities=17% Similarity=0.183 Sum_probs=120.0
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------ 211 (494)
-+..+.+.+..|-.++=+|+++.||||||.-. -+.++... ... ....-+--|.|.-|..+
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl----~QyL~edG---Y~~-~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQL----AQYLYEDG---YAD-NGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhh----HHHHHhcc---ccc-CCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 34445555555666677888999999999742 23333321 112 22333445888777665
Q ss_pred ----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh---hcCCCc
Q 042373 212 ----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN---IRPDRQ 266 (494)
Q Consensus 212 ----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~---l~~~~Q 266 (494)
.|-|.|+.-... -..|.+.+.||+||||.=.- ..+.+.-|++. -+.+..
T Consensus 429 G~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~----d~~L~kYSviImDEAHERsl--NtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLK----DRDLDKYSVIIMDEAHERSL--NTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred ccccceEEEeeecCCCceeEEEeccchHHHHHhh----hhhhhheeEEEechhhhccc--chHHHHHHHHHHHHhhccce
Confidence 344544432222 23588999999999996221 11222223222 245778
Q ss_pred EEEecCCCChHHHHHHHh--------------------------------------------------------------
Q 042373 267 AVLFSPTFPPRVEILARK-------------------------------------------------------------- 284 (494)
Q Consensus 267 ~ilfSAT~~~~v~~l~~~-------------------------------------------------------------- 284 (494)
+|..||||... +++..
T Consensus 503 liVtSATm~a~--kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~ 580 (1042)
T KOG0924|consen 503 LIVTSATMDAQ--KFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTC 580 (1042)
T ss_pred EEEeeccccHH--HHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHH
Confidence 99999998532 23222
Q ss_pred ----------------------------------------cCCccceeeccccccCCCCCCceEEEecCC----------
Q 042373 285 ----------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDA---------- 314 (494)
Q Consensus 285 ----------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~---------- 314 (494)
.|..+++|||++|.-.|-|+++.+||..++
T Consensus 581 ~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~ 660 (1042)
T KOG0924|consen 581 DIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRI 660 (1042)
T ss_pred HHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccc
Confidence 677889999999999999999999997543
Q ss_pred --------CCCHhHHHhhhccCCC--cceEEEEeccc
Q 042373 315 --------PNDYEDYVHHCCQSWL--KSCAFRFISEE 341 (494)
Q Consensus 315 --------P~s~~~yvhR~GRaGr--~G~aitfv~~~ 341 (494)
|-|-..--||.||||| .|.||.++++.
T Consensus 661 G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 661 GMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTED 697 (1042)
T ss_pred ccceeEEEechhccchhhccccCCCCCcceeeehhhh
Confidence 5566677899999998 68999999874
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.28 E-value=2.4e-10 Score=127.18 Aligned_cols=131 Identities=20% Similarity=0.135 Sum_probs=87.6
Q ss_pred CCCChhHHHHHHHHHcC----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 142 ENPVAIQAPASALIISG----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
..+++-|+.++..|... +-.++.+.||||||-+|+-.+-..+.. |..+|||+|-..|--|+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHH
Confidence 46788999999999766 678999999999999988766555533 77999999999999998
Q ss_pred ------------hhhh-HHHHHH--HhcCcc---------eecccceEEEEEcccchhcc---cCCh---hHHHHHHHhh
Q 042373 212 ------------VRRG-RMIDLL--CKNGVK---------ITNLTRVTYLVLDEADRMFD---MGFE---PQITRIVQNI 261 (494)
Q Consensus 212 ------------~TPg-rl~dll--~~~~~~---------~~~l~~l~~lVlDEaD~ml~---~gf~---~~i~~Il~~l 261 (494)
.+++ |..... .++..+ +..|.++.++||||=|--.- .+.+ .++-.... -
T Consensus 268 rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra-~ 346 (730)
T COG1198 268 RFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA-K 346 (730)
T ss_pred HhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH-H
Confidence 1222 222222 222221 23488999999999985331 1222 22222222 2
Q ss_pred cCCCcEEEecCCCChHHHHHH
Q 042373 262 RPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 262 ~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
..+.++||-|||.+-+-...+
T Consensus 347 ~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 347 KENAPVVLGSATPSLESYANA 367 (730)
T ss_pred HhCCCEEEecCCCCHHHHHhh
Confidence 357889999999665544444
No 112
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.28 E-value=4.7e-11 Score=134.42 Aligned_cols=188 Identities=15% Similarity=0.156 Sum_probs=135.4
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------- 211 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------- 211 (494)
+..+.+.+..|.+.+-+++.+.||+|||.-----++....... .....++--|.|--|..+
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 4456667777888888999999999999866555666655432 123344455876655554
Q ss_pred ---------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh-cccCChhHHHHHHHhhcCCCcEEE
Q 042373 212 ---------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM-FDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 212 ---------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m-l~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
||-|.|++.|... ..+..++++|+||+|.= .+..|.--+.+.+-..+++.++|+
T Consensus 249 ~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvIL 324 (924)
T KOG0920|consen 249 EEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVIL 324 (924)
T ss_pred CeeeEEEeeecccCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEE
Confidence 8899999888763 36899999999999962 233444444444444568999999
Q ss_pred ecCCCChHHHHHHHh-----------------------------------------------------------------
Q 042373 270 FSPTFPPRVEILARK----------------------------------------------------------------- 284 (494)
Q Consensus 270 fSAT~~~~v~~l~~~----------------------------------------------------------------- 284 (494)
+|||+..+.-.....
T Consensus 325 MSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li 404 (924)
T KOG0920|consen 325 MSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLI 404 (924)
T ss_pred eeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHH
Confidence 999975322110000
Q ss_pred ---------------------------------------------------------------cCCccceeeccccccCC
Q 042373 285 ---------------------------------------------------------------TNVCNLSIANSVRARGL 301 (494)
Q Consensus 285 ---------------------------------------------------------------~g~~~ILVaTdv~~rGl 301 (494)
.|..+|+++|++|+-.|
T Consensus 405 ~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSI 484 (924)
T KOG0920|consen 405 EYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSI 484 (924)
T ss_pred HhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcc
Confidence 67889999999999999
Q ss_pred CCCCceEEEe--------cCCCCC----------HhHHHhhhccCCC--cceEEEEecccC
Q 042373 302 DEKELELVIN--------FDAPND----------YEDYVHHCCQSWL--KSCAFRFISEEN 342 (494)
Q Consensus 302 Di~~v~~VIn--------yd~P~s----------~~~yvhR~GRaGr--~G~aitfv~~~~ 342 (494)
-|++|-+||+ ||.-.+ ...-.||.||||| .|.||.+++...
T Consensus 485 TIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 485 TIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSR 545 (924)
T ss_pred cccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhh
Confidence 9999999997 554333 3344699999998 899999999753
No 113
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.26 E-value=3.1e-11 Score=105.10 Aligned_cols=106 Identities=39% Similarity=0.500 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------------------------
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------------------------- 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------------------------- 211 (494)
+++++.++||+|||..++..+........ ..+++|++|++.|+.|.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-------~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-------GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-------CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 47899999999999999988888765421 56899999999999986
Q ss_pred -----------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 212 -----------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 212 -----------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
+|+..+...+.... .....+.++|+||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 23343433333211 1244788999999999987665444323344456778999999995
No 114
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.26 E-value=4.9e-11 Score=134.94 Aligned_cols=193 Identities=20% Similarity=0.233 Sum_probs=134.5
Q ss_pred CCChhHHHHHHHHHcC---C-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh-----
Q 042373 143 NPVAIQAPASALIISG---L-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR----- 213 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g---r-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T----- 213 (494)
.+.+.|..++-.++.. . .+++.||||+|||.+.+.+.+..+.... ...++.+++.|+|.+..++.-
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-----~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-----KLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-----cccceEEEEccHHHHHHHHHHHHHhh
Confidence 3488999999888855 4 7889999999999999999998876520 127799999999999998800
Q ss_pred -----------h----------------------------------hHHHHHHH--hcCcceecc--cceEEEEEcccch
Q 042373 214 -----------R----------------------------------GRMIDLLC--KNGVKITNL--TRVTYLVLDEADR 244 (494)
Q Consensus 214 -----------P----------------------------------grl~dll~--~~~~~~~~l--~~l~~lVlDEaD~ 244 (494)
. ....+++. .+..+...+ =..+.+||||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 0 00011111 000000001 1236899999998
Q ss_pred hcccCChhHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHh---------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNIR-PDRQAVLFSPTFPPRVEILARK--------------------------------------- 284 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------- 284 (494)
+.+......+..++..+. .+..+|++|||+|+........
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 887644445555555543 5788999999999988766654
Q ss_pred --------------------------------------------------------------cCCccceeeccccccCCC
Q 042373 285 --------------------------------------------------------------TNVCNLSIANSVRARGLD 302 (494)
Q Consensus 285 --------------------------------------------------------------~g~~~ILVaTdv~~rGlD 302 (494)
.+...|+|||.|..-|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 267789999999999999
Q ss_pred CCCceEEEecCCCCCHhHHHhhhccCCC-----cceEEEEecccCH
Q 042373 303 EKELELVINFDAPNDYEDYVHHCCQSWL-----KSCAFRFISEENA 343 (494)
Q Consensus 303 i~~v~~VInyd~P~s~~~yvhR~GRaGr-----~G~aitfv~~~~~ 343 (494)
+. ++++|- -+..+...|||+||..| .|..+.+......
T Consensus 510 id-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 510 ID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred cc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 95 677763 35668899999999444 4456666654433
No 115
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=5.8e-11 Score=127.17 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=119.6
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
+.+.++-..+=+|+.|.||||||. .+|-. +.+..-. ..|.+.-+--|.|--|..+
T Consensus 272 ell~av~e~QVLiI~GeTGSGKTT--QiPQy--L~EaGyt---k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGY 344 (902)
T KOG0923|consen 272 ELLKAVKEHQVLIIVGETGSGKTT--QIPQY--LYEAGYT---KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGY 344 (902)
T ss_pred HHHHHHHhCcEEEEEcCCCCCccc--cccHH--HHhcccc---cCCceEeecCcchHHHHHHHHHHHHHhCcccccccce
Confidence 344455566678888999999998 34433 3332211 1133344555888877776
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh-cccC-ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM-FDMG-FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m-l~~g-f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.|-|-|+.-+... .+|.+.+++|+||||.= +... ....|..|. .++++..+++.|||
T Consensus 345 sIRFEdcTSekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~RpdLKllIsSAT 419 (902)
T KOG0923|consen 345 SIRFEDCTSEKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFRPDLKLLISSAT 419 (902)
T ss_pred EEEeccccCcceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhCCcceEEeeccc
Confidence 3556555444332 36899999999999962 1111 111222222 34688889999999
Q ss_pred CChHH-HHHHHh--------------------------------------------------------------------
Q 042373 274 FPPRV-EILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 274 ~~~~v-~~l~~~-------------------------------------------------------------------- 284 (494)
+..+- ..+...
T Consensus 420 ~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~ 499 (902)
T KOG0923|consen 420 MDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRR 499 (902)
T ss_pred cCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHH
Confidence 76431 111111
Q ss_pred ------------------------------cCCccceeeccccccCCCCCCceEEEecCC------------------CC
Q 042373 285 ------------------------------TNVCNLSIANSVRARGLDEKELELVINFDA------------------PN 316 (494)
Q Consensus 285 ------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~------------------P~ 316 (494)
.|..+|++||++|.-.|-|++|.+||.-++ |-
T Consensus 500 LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 500 LGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred hccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeee
Confidence 677899999999999999999999997544 44
Q ss_pred CHhHHHhhhccCCC--cceEEEEeccc
Q 042373 317 DYEDYVHHCCQSWL--KSCAFRFISEE 341 (494)
Q Consensus 317 s~~~yvhR~GRaGr--~G~aitfv~~~ 341 (494)
|..+-.||.||||| .|.|+.+++..
T Consensus 580 SKAsA~QRaGRAGRtgPGKCfRLYt~~ 606 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTGPGKCFRLYTAW 606 (902)
T ss_pred chhhhhhhccccCCCCCCceEEeechh
Confidence 66677899999999 68899999843
No 116
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.17 E-value=5.2e-09 Score=120.83 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=51.9
Q ss_pred ccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc--CHHHHHHHHH
Q 042373 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE--NAIYATDLVK 351 (494)
Q Consensus 288 ~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~--~~~~~~~i~~ 351 (494)
+.+|++|.+++.|||+..+++||+||.+.++..+.|++||+.|-| .+|.|++.+ +.+.+....+
T Consensus 541 ~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 541 FVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred eEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999966655 477888876 3344444433
No 117
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.10 E-value=2.2e-10 Score=92.41 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCcEEEecCCCChHHHHHHH-h--cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc
Q 042373 264 DRQAVLFSPTFPPRVEILAR-K--TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS 332 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~-~--~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G 332 (494)
+..+..+.+.++..-..-.- . .+...|||||+++++|+|+|++++||+|+.|.+...|+||+||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 34456666666554433322 2 778899999999999999999999999999999999999999999976
No 118
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.09 E-value=1.2e-09 Score=115.34 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=113.1
Q ss_pred hhhhHHHHHHHhc---CcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC------------------------C
Q 042373 212 VRRGRMIDLLCKN---GVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP------------------------D 264 (494)
Q Consensus 212 ~TPgrl~dll~~~---~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~------------------------~ 264 (494)
|+|-.|..++... ....--|+.|.++|+|.||.|+ |+.|+++..+++++.. -
T Consensus 137 ASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~ 215 (442)
T PF06862_consen 137 ASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYY 215 (442)
T ss_pred EChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchhe
Confidence 7888887777742 2223348999999999999887 8889999999988742 1
Q ss_pred CcEEEecCCCChHHHHHHHh------------------------------------------------------------
Q 042373 265 RQAVLFSPTFPPRVEILARK------------------------------------------------------------ 284 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------------ 284 (494)
||+|+||+...+++..+..+
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 79999999999999888876
Q ss_pred ----------------------------------------------------cCCccceeecccc--ccCCCCCCceEEE
Q 042373 285 ----------------------------------------------------TNVCNLSIANSVR--ARGLDEKELELVI 310 (494)
Q Consensus 285 ----------------------------------------------------~g~~~ILVaTdv~--~rGlDi~~v~~VI 310 (494)
.|+.+||+.|.-+ -|-..|.+|++||
T Consensus 296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 296 RDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred hccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE
Confidence 8999999999866 5778999999999
Q ss_pred ecCCCCCHhHHHhhhcc-CC--------CcceEEEEecccCHHHHHHHHH
Q 042373 311 NFDAPNDYEDYVHHCCQ-SW--------LKSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 311 nyd~P~s~~~yvhR~GR-aG--------r~G~aitfv~~~~~~~~~~i~~ 351 (494)
.|.+|.++.-|-.-+.- .. ....|.++++..|.-.+..|+-
T Consensus 376 FY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 376 FYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 99999999998876654 11 2468999999988877777663
No 119
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.08 E-value=2.5e-09 Score=111.50 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=134.5
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.|..|...+.++.-.+.|++..----+..+...+..+.+++-+++++.||||||.-.---++...... ...+
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~v 94 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTGV 94 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------ccce
Confidence 37789999999988888876422222334445556666778889999999999975433333333321 1112
Q ss_pred EEEccchhHHHhh-------------------------hhhhHHHHHHH-----hcCcceecccceEEEEEcccchhc-c
Q 042373 199 LVMAPTGELVRQQ-------------------------VRRGRMIDLLC-----KNGVKITNLTRVTYLVLDEADRMF-D 247 (494)
Q Consensus 199 LIl~PTreLa~Qi-------------------------~TPgrl~dll~-----~~~~~~~~l~~l~~lVlDEaD~ml-~ 247 (494)
.---|.|--|.++ ++|..++..+. +.....-.|.+..++||||||.=. .
T Consensus 95 ~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlA 174 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLA 174 (699)
T ss_pred eecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHH
Confidence 2233777776666 34444433221 111111247899999999999611 1
Q ss_pred c-CChhHHHHHHHhhcCCCcEEEecCCCChH--------------------------------HHHHHHh----------
Q 042373 248 M-GFEPQITRIVQNIRPDRQAVLFSPTFPPR--------------------------------VEILARK---------- 284 (494)
Q Consensus 248 ~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~--------------------------------v~~l~~~---------- 284 (494)
. -....+..++.. +++..+|.+|||+-.. ++..++.
T Consensus 175 TDiLmGllk~v~~~-rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~ 253 (699)
T KOG0925|consen 175 TDILMGLLKEVVRN-RPDLKLVVMSATLDAEKFQRYFGNAPLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEP 253 (699)
T ss_pred HHHHHHHHHHHHhh-CCCceEEEeecccchHHHHHHhCCCCeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccCC
Confidence 0 001122222222 3688899999985321 1111111
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.-..+|+|+|+++.-.+-+++|.
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv 333 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIV 333 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCchhhccccCCCCcccCCCccceEEEEecchheeeeeccEE
Confidence 22456999999999999999999
Q ss_pred EEEecCC------------------CCCHhHHHhhhccCCC--cceEEEEeccc
Q 042373 308 LVINFDA------------------PNDYEDYVHHCCQSWL--KSCAFRFISEE 341 (494)
Q Consensus 308 ~VInyd~------------------P~s~~~yvhR~GRaGr--~G~aitfv~~~ 341 (494)
+||.-++ |-|..+--||.||+|| .|.|+.++++.
T Consensus 334 ~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 334 FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 9998554 5677788899999886 89999999874
No 120
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.3e-10 Score=124.56 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=45.5
Q ss_pred cCCccceeeccccccCCCCCCceEEEe--------cCCCCCHhHH----------HhhhccCCC--cceEEEEeccc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVIN--------FDAPNDYEDY----------VHHCCQSWL--KSCAFRFISEE 341 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VIn--------yd~P~s~~~y----------vhR~GRaGr--~G~aitfv~~~ 341 (494)
.|..-++|||+||.-.|-||+|.+||. ||--..+..| =||+||||| .|.||.|++..
T Consensus 628 ~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSA 704 (1172)
T KOG0926|consen 628 KGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSA 704 (1172)
T ss_pred CCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhH
Confidence 566668899999999999999999996 4444444444 389999999 67899998753
No 121
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.07 E-value=1.2e-09 Score=122.47 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC-------cceEEEEecccCHHHHHHHHHHHH
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL-------KSCAFRFISEENAIYATDLVKAFE 354 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr-------~G~aitfv~~~~~~~~~~i~~~l~ 354 (494)
+..+|||+++.+..|.|.|.+++++ +|-|-....++|.+||..| .|..+-|+.. ...+.++|.
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLy-ldKplk~h~LlQai~R~nR~~~~~K~~g~IvDy~g~-----~~~l~~Al~ 659 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLY-LDKPLKYHGLLQAIARTNRIDGKDKTFGLIVDYRGL-----EKSLIDALS 659 (667)
T ss_pred CCceEEEEEcccccccCCCccceEE-EeccccccHHHHHHHHhccccCCCCCCEEEEECcCh-----HHHHHHHHH
Confidence 3568999999999999999998887 6667655678999999666 2555655543 345555554
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.07 E-value=7.9e-10 Score=123.57 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=71.1
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCC-----CCCHhHHHhhhccCCC--cceEEEEecc---------cCHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDA-----PNDYEDYVHHCCQSWL--KSCAFRFISE---------ENAIYATD 348 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~-----P~s~~~yvhR~GRaGr--~G~aitfv~~---------~~~~~~~~ 348 (494)
.|.+.|||||++++||+|+|++++||++|. |.+...|+||+||+|| .|.+++|++. .+....+.
T Consensus 494 ~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~~~~~~~~~~~~~~ 573 (652)
T PRK05298 494 LGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETERRRE 573 (652)
T ss_pred cCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999885 7899999999999776 7899999984 46677888
Q ss_pred HHHHHHhccCcchHHH
Q 042373 349 LVKAFELSELVVRDDL 364 (494)
Q Consensus 349 i~~~l~~~~~~vp~~l 364 (494)
+...++.....+|..+
T Consensus 574 i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 574 IQIAYNEEHGITPKTI 589 (652)
T ss_pred HHHHhhhccCCCChhH
Confidence 8888899999999766
No 123
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.06 E-value=9.9e-10 Score=115.98 Aligned_cols=219 Identities=13% Similarity=0.054 Sum_probs=150.9
Q ss_pred HHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---
Q 042373 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--- 211 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--- 211 (494)
.+..+..+....+|..+|..+..|+++++.-.|.+||.++|.+..+..+...+ ....+++.||.+|+...
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-------~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-------ATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc-------ccceecchhHHHHhhccCCc
Confidence 34556677889999999999999999999999999999999988877665433 23467888888888765
Q ss_pred ---------------------------------------hhhhHHHH-HHHhcCcceecccceEEEEEcccchhcccCCh
Q 042373 212 ---------------------------------------VRRGRMID-LLCKNGVKITNLTRVTYLVLDEADRMFDMGFE 251 (494)
Q Consensus 212 ---------------------------------------~TPgrl~d-ll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~ 251 (494)
..|...+. .|.+.-.....+-.+.++++||+|..+- -|.
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~ 429 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF-PTK 429 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-chh
Confidence 01111111 1111000001123456789999996542 222
Q ss_pred ----hHHHHHHHhh-----cCCCcEEEecCCCChHHHHHHHh--------------------------------------
Q 042373 252 ----PQITRIVQNI-----RPDRQAVLFSPTFPPRVEILARK-------------------------------------- 284 (494)
Q Consensus 252 ----~~i~~Il~~l-----~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------- 284 (494)
.++++++..+ ..+-|++-.|+|+-..++.....
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 3444444333 24667888888876555433332
Q ss_pred -----------------------------------------------------------------------cCCccceee
Q 042373 285 -----------------------------------------------------------------------TNVCNLSIA 293 (494)
Q Consensus 285 -----------------------------------------------------------------------~g~~~ILVa 293 (494)
.|+..-+|+
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 688889999
Q ss_pred ccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc---eE--EEEecccCHHHHHHHHHHHHhccCcch
Q 042373 294 NSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CA--FRFISEENAIYATDLVKAFELSELVVR 361 (494)
Q Consensus 294 Tdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G---~a--itfv~~~~~~~~~~i~~~l~~~~~~vp 361 (494)
|+.+.-||||..++.|++.++|-++..+.|..|||||.. .+ +.+..+-+..++..-..++...+.++-
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~ 662 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELH 662 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeE
Confidence 999999999999999999999999999999999998732 23 333345677777777777766555543
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.05 E-value=2.7e-09 Score=119.49 Aligned_cols=63 Identities=29% Similarity=0.301 Sum_probs=51.9
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|| .|+.+|.-..-.++.|+..-++||||.|||. |.+.+--.+-.+ |.+++||+||+.|+.|+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~k--------gkr~yii~PT~~Lv~Q~ 141 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAKK--------GKRVYIIVPTTTLVRQV 141 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHhc--------CCeEEEEecCHHHHHHH
Confidence 466 8999999999999999999999999999995 444333333221 67899999999999998
No 125
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.94 E-value=2.9e-09 Score=122.61 Aligned_cols=74 Identities=24% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHH----HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASA----LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip----~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
+++.+...+...||+ +.|.|.+.+. .+..|+++++.||||+|||++|++|++.+.. . +.++||.+|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~--------~~~vvi~t~ 300 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T--------EKPVVISTN 300 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C--------CCeEEEEeC
Confidence 445677778889996 7899998666 5567899999999999999999999988764 1 447999999
Q ss_pred chhHHHhh
Q 042373 204 TGELVRQQ 211 (494)
Q Consensus 204 TreLa~Qi 211 (494)
|++|..|+
T Consensus 301 t~~Lq~Ql 308 (850)
T TIGR01407 301 TKVLQSQL 308 (850)
T ss_pred cHHHHHHH
Confidence 99999997
No 126
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.87 E-value=4.4e-09 Score=116.05 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCCChhHHHHHHHHH----cCC-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 142 ENPVAIQAPASALII----SGL-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il----~gr-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
..|...|..||..+. .|+ -++++.-||+|||...+ .++..|+.... -.++|+|+-++.|+.|.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~~------~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSGW------VKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcch------hheeeEEechHHHHHHHHHHHH
Confidence 467889999987654 453 48889999999998754 45666654321 45899999999999997
Q ss_pred -------------------------hhhhHHHHHHHhc--CcceecccceEEEEEcccchh
Q 042373 212 -------------------------VRRGRMIDLLCKN--GVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 212 -------------------------~TPgrl~dll~~~--~~~~~~l~~l~~lVlDEaD~m 245 (494)
+|-.+|...+... ....+.....+++|+|||||=
T Consensus 237 ~~~P~~~~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 237 DFLPFGTKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG 297 (875)
T ss_pred HhCCCccceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh
Confidence 3445555555432 112233445899999999983
No 127
>COG4889 Predicted helicase [General function prediction only]
Probab=98.78 E-value=1.4e-08 Score=111.80 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=54.7
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
-.|+.+.. .++..+|.-..-.+|.|+|+.||...+.| |--++. ..|+|||+..+- +-+.+- .
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIM-AcGTGKTfTsLk-isEala----------~ 206 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIM-ACGTGKTFTSLK-ISEALA----------A 206 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEE-ecCCCccchHHH-HHHHHh----------h
Confidence 45665543 34445554455679999999999999977 333433 469999987653 344432 3
Q ss_pred CeEEEEccchhHHHhh
Q 042373 196 PVGLVMAPTGELVRQQ 211 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi 211 (494)
.++|+|+|+..|..|.
T Consensus 207 ~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 207 ARILFLVPSISLLSQT 222 (1518)
T ss_pred hheEeecchHHHHHHH
Confidence 5799999999999987
No 128
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.73 E-value=4.3e-08 Score=78.32 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCcEEEecCCCChHHHHHH-H--hcCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc
Q 042373 264 DRQAVLFSPTFPPRVEILA-R--KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS 332 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~-~--~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G 332 (494)
...++.+.+.+++....-. . ..+...|||+|+++++|+|++++++||.++.|.+...|+|++||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 3456666665665433222 2 1677899999999999999999999999999999999999999999876
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.70 E-value=4.6e-08 Score=112.02 Aligned_cols=64 Identities=31% Similarity=0.348 Sum_probs=51.8
Q ss_pred HhCCCCCCChhHHHHHHH----HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 137 SKLNHENPVAIQAPASAL----IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 137 ~~~g~~~ptpiQ~~aip~----il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.-.|| ++.+-|.+.... +..++.+++.|+||||||++|++|++.+. .+.++||++|||+|+.|+
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHH
Confidence 33566 589999884443 33568899999999999999999988753 156899999999999998
No 130
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.66 E-value=2.9e-07 Score=104.57 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=57.9
Q ss_pred cCCccceeeccccccCCCCC---CceE-----EEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHH--H--HHH
Q 042373 285 TNVCNLSIANSVRARGLDEK---ELEL-----VINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIY--A--TDL 349 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~---~v~~-----VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~--~--~~i 349 (494)
.+...|+|||++|+||+||+ +|.. ||+++.|.+...|+||+||+|| .|.+++|++.+|.-. + ..+
T Consensus 644 G~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i 723 (1025)
T PRK12900 644 GQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRV 723 (1025)
T ss_pred CCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHH
Confidence 67789999999999999999 5644 5999999999999999999555 789999999875421 1 245
Q ss_pred HHHHHhccC
Q 042373 350 VKAFELSEL 358 (494)
Q Consensus 350 ~~~l~~~~~ 358 (494)
.++++..+.
T Consensus 724 ~~~~~~~~~ 732 (1025)
T PRK12900 724 ISVMDRLGH 732 (1025)
T ss_pred HHHHHHcCC
Confidence 566655443
No 131
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.64 E-value=1.9e-07 Score=106.41 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=35.0
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS 332 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G 332 (494)
+...|+|+|.|.+-|+|+. .+++|- -|.++...|||+||..|.|
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcccccc
Confidence 4667999999999999984 566653 4778999999999965544
No 132
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.58 E-value=2.6e-07 Score=98.10 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=42.6
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCC---------CCHhHHHhhhccCCC------cceEEEEec
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAP---------NDYEDYVHHCCQSWL------KSCAFRFIS 339 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P---------~s~~~yvhR~GRaGr------~G~aitfv~ 339 (494)
.+.++||||||..++||++ +|+.||.|++- -+..+-.|-.||||| .|.+.+|-.
T Consensus 407 ~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 407 SNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred CCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 6899999999999999998 68888888763 456777888888887 455555543
No 133
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.57 E-value=2.2e-07 Score=83.94 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=63.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------------------------
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------------- 211 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------------- 211 (494)
|+=.++-..+|+|||.-.+.-++...... +.++|||.|||.++..+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~--------~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i 75 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR--------RLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSII 75 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT--------T--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSE
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc--------cCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcc
Confidence 44457778999999998777777766554 67899999999999887
Q ss_pred --hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC--ChhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 212 --VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG--FEPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 212 --~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
.|-+.+...+.+. ..+.+.+++|+||||.+--.. +.-.+...-. .....+|++|||.|....
T Consensus 76 ~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 76 DVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGSED 141 (148)
T ss_dssp EEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT---
T ss_pred cccccHHHHHHhcCc----ccccCccEEEEeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCCCC
Confidence 1223344444432 236789999999999743221 2222222211 134579999999886653
No 134
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.54 E-value=1.3e-06 Score=96.76 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=53.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|++.|....-.++.|+ |+...||+|||++..+|++...+. |..+-|++||--||.|-
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RD 135 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRD 135 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHH
Confidence 565 79999999998998885 778999999999999999988765 66799999999999986
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.45 E-value=5.6e-07 Score=78.44 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=56.3
Q ss_pred CCcEEEecCCCChHHHHHHH---hcCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc
Q 042373 264 DRQAVLFSPTFPPRVEILAR---KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS 332 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~---~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G 332 (494)
...+..+.+.+++....... ..+...||++|..+++|+|++++++||.++.|.+...|+|++||++|.|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~ 123 (131)
T cd00079 52 GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAG 123 (131)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCC
Confidence 45677777666654433222 2777899999999999999999999999999999999999999988766
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=6.8e-06 Score=93.21 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=49.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|+++|...--.+..| -|+...||+|||++..+|++-..+. |..+-|++||.-||.|-
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD 139 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRD 139 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHH
Confidence 563 7888888765555544 5889999999999999999877654 67899999999999986
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.41 E-value=9.3e-07 Score=102.86 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=52.3
Q ss_pred CCCCCCChhHHHHHHHH----HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALI----ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~i----l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
-|| ++.|-|.+.+..+ ..++.+++.|+||+|||++|++|++.+.... +.+++|-++|+.|..|+
T Consensus 254 ~~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~--------~~~vvIsT~T~~LQ~Ql 321 (928)
T PRK08074 254 PKY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK--------EEPVVISTYTIQLQQQL 321 (928)
T ss_pred CCC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc--------CCeEEEEcCCHHHHHHH
Confidence 355 6899999855544 3678899999999999999999998765432 56799999999999997
No 138
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.33 E-value=1.1e-06 Score=92.38 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=70.6
Q ss_pred CCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 142 ENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
..+.|+|..++..++.+ |.-|++-|.|+|||+.-+-.+. .+ ...+||||.+---+.|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti-----------kK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI-----------KKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee-----------cccEEEEecCccCHHHHHHHHHhh
Confidence 35789999999998843 7889999999999987654433 11 44689999887777776
Q ss_pred ----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCCh
Q 042373 212 ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFE 251 (494)
Q Consensus 212 ----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~ 251 (494)
....+++++|.. +.+.++||||+|-+...-|+
T Consensus 369 sti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~--------~EWGllllDEVHvvPA~MFR 440 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG--------REWGLLLLDEVHVVPAKMFR 440 (776)
T ss_pred cccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc--------CeeeeEEeehhccchHHHHH
Confidence 011334444443 35789999999987766676
Q ss_pred hHHHHHHHhh
Q 042373 252 PQITRIVQNI 261 (494)
Q Consensus 252 ~~i~~Il~~l 261 (494)
..+.-+-.++
T Consensus 441 RVlsiv~aHc 450 (776)
T KOG1123|consen 441 RVLSIVQAHC 450 (776)
T ss_pred HHHHHHHHHh
Confidence 6666555554
No 139
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.32 E-value=1.4e-06 Score=99.64 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=81.3
Q ss_pred CCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------
Q 042373 141 HENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------- 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------- 211 (494)
|....|||.++++.+... .++++.+|+|||||.+.-+.+++ + ....+++++.|.-+.+..+
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~-----~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----P-----DTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----C-----ccceEEEEecchHHHHHHHHHHHHHhh
Confidence 444589999999998865 57888899999999999888875 1 1256899999998888765
Q ss_pred -----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC------ChhHHHH
Q 042373 212 -----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG------FEPQITR 256 (494)
Q Consensus 212 -----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g------f~~~i~~ 256 (494)
+||.++ +++. +.+.+++.|.||.|.+-+.. ... ++.
T Consensus 1211 ~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~-d~lq-------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ 1281 (1674)
T KOG0951|consen 1211 SKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQW-DLLQ-------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRY 1281 (1674)
T ss_pred ccccCceEEecCCccccchHHhhhcceEEechhHH-HHHh-------hhhhcceEeeehhhhhcccCCceEEEEee-HHH
Confidence 577664 4442 46788999999999877421 112 555
Q ss_pred HHHhhcCCCcEEEecCC
Q 042373 257 IVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 257 Il~~l~~~~Q~ilfSAT 273 (494)
|-.++-+..+++.+|..
T Consensus 1282 ia~q~~k~ir~v~ls~~ 1298 (1674)
T KOG0951|consen 1282 IASQLEKKIRVVALSSS 1298 (1674)
T ss_pred HHHHHHhheeEEEeehh
Confidence 65555555555555443
No 140
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.29 E-value=1e-06 Score=97.67 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=46.3
Q ss_pred HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh
Q 042373 152 SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR 213 (494)
Q Consensus 152 ip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T 213 (494)
...+..++.+++.|+||+|||++|++|++..+.... +.++||++||++|+.|+..
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-------~~rvlIstpT~~Lq~Ql~~ 64 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERP-------DQKIAIAVPTLALMGQLWS 64 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-------CceEEEECCcHHHHHHHHH
Confidence 344557789999999999999999999998875321 5689999999999999864
No 141
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.19 E-value=3.3e-06 Score=85.68 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCChhHHH----HHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAP----ASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~----aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|+|.|.+ ++..+..|.++++.||||+|||++|++|++.++....... .+.+++|+++|..+..|.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHH
Confidence 46999999 5556678899999999999999999999998876533110 134799999999998775
No 142
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.19 E-value=3.3e-06 Score=85.68 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCChhHHH----HHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAP----ASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~----aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|+|.|.+ ++..+..|.++++.||||+|||++|++|++.++....... .+.+++|+++|..+..|.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHH
Confidence 46999999 5556678899999999999999999999998876533110 134799999999998775
No 143
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.17 E-value=1.2e-05 Score=76.91 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=72.1
Q ss_pred CCChhHHHHHHHHHcCC--CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-----hhh
Q 042373 143 NPVAIQAPASALIISGL--DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-----RRG 215 (494)
Q Consensus 143 ~ptpiQ~~aip~il~gr--dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-----TPg 215 (494)
++++-|..++-.++... =++++++.|||||.+ +-.+...+... +..+++++||...+..+. ...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--------g~~v~~~apT~~Aa~~L~~~~~~~a~ 71 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--------GKRVIGLAPTNKAAKELREKTGIEAQ 71 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--------T--EEEEESSHHHHHHHHHHHTS-EE
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--------CCeEEEECCcHHHHHHHHHhhCcchh
Confidence 36889999999997554 366779999999964 33455555442 568999999988887661 112
Q ss_pred HHHHHHHhcCccee----cccceEEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecC
Q 042373 216 RMIDLLCKNGVKIT----NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSP 272 (494)
Q Consensus 216 rl~dll~~~~~~~~----~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSA 272 (494)
.+..++........ .+...++||||||-.+- ..++..++..++. +.++|++-=
T Consensus 72 Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 72 TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-
T ss_pred hHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECC
Confidence 24444443222111 15566899999998654 4567777777765 566666543
No 144
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.15 E-value=0.00011 Score=82.99 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=46.8
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
+|. .|+++|...--.+..|+ |+...||=|||++..+|+.-..+. |..+=|++..--||..
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~R 134 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAER 134 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhh
Confidence 566 79999998887777775 789999999999999999765544 4456677777777654
No 145
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.11 E-value=1.8e-05 Score=76.20 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhh------
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRR------ 214 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TP------ 214 (494)
.-.|.-|..++.+++...-+++.+|.|||||+..+...++.+.... --+.+|+-|+.+....+ .-|
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-------~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-------YDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--------SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-------CcEEEEEecCCCCccccccCCCCHHHH
Confidence 3468899999999998888889999999999999998888887632 34677777887765555 112
Q ss_pred ------------------hHHHHHHHhcCcceeccc-----c--eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 215 ------------------GRMIDLLCKNGVKITNLT-----R--VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 215 ------------------grl~dll~~~~~~~~~l~-----~--l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
+.+-.++..+......+. . -.+||+|||..+. ..++..++.++..+..+++
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t----~~~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLT----PEELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG------HHHHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCC----HHHHHHHHcccCCCcEEEE
Confidence 222333433333222221 1 2799999998765 4577778887765555554
Q ss_pred e
Q 042373 270 F 270 (494)
Q Consensus 270 f 270 (494)
+
T Consensus 152 ~ 152 (205)
T PF02562_consen 152 T 152 (205)
T ss_dssp E
T ss_pred e
Confidence 4
No 146
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.96 E-value=3.4e-05 Score=86.44 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=71.5
Q ss_pred CCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhh---------------------
Q 042373 158 GLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRG--------------------- 215 (494)
Q Consensus 158 grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPg--------------------- 215 (494)
.+.+ ++.||.|||||.+.+-++ ......+ ...+|+|+-.|.|+.+++.--
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wL-k~~l~~~-------~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWL-KDALKNP-------DKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDG 119 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHH-HHhccCC-------CCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccc
Confidence 4444 566999999998654433 3332221 568999999999999873210
Q ss_pred ----HH---HHHHHhcCcceecccceEEEEEcccchhcccCChhH------HHH-HHHhhcCCCcEEEecCCCChHHHHH
Q 042373 216 ----RM---IDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQ------ITR-IVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 216 ----rl---~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~------i~~-Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
|| ++-|.+- ....+.+.++|||||+...+..=|.+. +.. +...++....+|++-|++....-++
T Consensus 120 ~~~~rLivqIdSL~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred cccCeEEEEehhhhhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 00 0001110 001245689999999987775423222 222 2334466778889999998887777
Q ss_pred HHh
Q 042373 282 ARK 284 (494)
Q Consensus 282 ~~~ 284 (494)
...
T Consensus 198 l~~ 200 (824)
T PF02399_consen 198 LAS 200 (824)
T ss_pred HHH
Confidence 765
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.90 E-value=1.2e-05 Score=90.97 Aligned_cols=63 Identities=27% Similarity=0.198 Sum_probs=51.2
Q ss_pred CCCCCChhHHHHHHHHH---cC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 140 NHENPVAIQAPASALII---SG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il---~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
|| ++.+-|.+.+-.+. .+ +.+++-|+||+|||++|++|.+...... +.++||-+.|+.|-.|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~--------~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE--------KKKLVISTATVALQEQ 93 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc--------CCeEEEEcCCHHHHHH
Confidence 56 67999998555543 43 6688899999999999999998766543 4579999999999999
Q ss_pred h
Q 042373 211 Q 211 (494)
Q Consensus 211 i 211 (494)
+
T Consensus 94 L 94 (697)
T PRK11747 94 L 94 (697)
T ss_pred H
Confidence 8
No 148
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.88 E-value=5.4e-05 Score=75.65 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=56.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------h-----------------
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------V----------------- 212 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------~----------------- 212 (494)
..+..|++-..|+|||+..+.-+. .+....+.. ..-.+|||||. .+..|. +
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~---~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~ 98 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEFPQR---GEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERR 98 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTS---S-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHH
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhccccc---cccceeEeecc-chhhhhhhhhccccccccccccccccccccc
Confidence 346889999999999987665444 444332110 01249999999 665665 1
Q ss_pred ---------------hhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 213 ---------------RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 213 ---------------TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
|...+...........+.--+..+||+||+|.+- +........+..+. ....+++|||.
T Consensus 99 ~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k--~~~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 99 RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK--NKDSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT--TTTSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred cccccccccceeeeccccccccccccccccccccccceeEEEecccccc--cccccccccccccc-cceEEeecccc
Confidence 1111110000000001111248899999999984 33344455555565 66778899994
No 149
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.86 E-value=0.0004 Score=76.82 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=43.8
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHh---hhccCCC--cceEEEEecccC
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH---HCCQSWL--KSCAFRFISEEN 342 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvh---R~GRaGr--~G~aitfv~~~~ 342 (494)
..+-.|++|-..+-||++...++||.||--.++..=+| |+-|-|. .=.+|.|++.+.
T Consensus 539 ~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 539 EKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 45668899999999999999999999999887766655 4444343 335788898873
No 150
>PRK10536 hypothetical protein; Provisional
Probab=97.79 E-value=0.00018 Score=71.43 Aligned_cols=120 Identities=18% Similarity=0.123 Sum_probs=76.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhH-
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGR- 216 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgr- 216 (494)
.++.--+..|...+-.+.++..+++.+++|||||+..+.-.++.+.... --+++|.-|+.+....+ ..||.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-------~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-------VDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-------eeEEEEeCCCCCchhhhCcCCCCH
Confidence 5566778899999999999888899999999999987777776664421 33566666877666555 12221
Q ss_pred ----------HHH-------------HHH--hcCcceeccc-------ceEEEEEcccchhcccCChhHHHHHHHhhcCC
Q 042373 217 ----------MID-------------LLC--KNGVKITNLT-------RVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 264 (494)
Q Consensus 217 ----------l~d-------------ll~--~~~~~~~~l~-------~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~ 264 (494)
+.| ++. .+......+. .-.+||||||+.+- ..++..++.++..+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~----~~~~k~~ltR~g~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVT----AAQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCC----HHHHHHHHhhcCCC
Confidence 111 111 1111111111 12699999999765 36777777777555
Q ss_pred CcEEE
Q 042373 265 RQAVL 269 (494)
Q Consensus 265 ~Q~il 269 (494)
..+|+
T Consensus 204 sk~v~ 208 (262)
T PRK10536 204 VTVIV 208 (262)
T ss_pred CEEEE
Confidence 55444
No 151
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.78 E-value=0.00058 Score=76.73 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=48.4
Q ss_pred cCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------hhh-hHHHHHH--H
Q 042373 165 TETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------VRR-GRMIDLL--C 222 (494)
Q Consensus 165 a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------~TP-grl~dll--~ 222 (494)
+-+|||||-.|+-.+-..+.. |..+|||+|...|..|+ .++ .|+..++ .
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 336999999998766665543 66899999999999998 122 2222222 2
Q ss_pred hcCcc---------eecccceEEEEEcccch
Q 042373 223 KNGVK---------ITNLTRVTYLVLDEADR 244 (494)
Q Consensus 223 ~~~~~---------~~~l~~l~~lVlDEaD~ 244 (494)
.+..+ +..+.++.+||+||=|-
T Consensus 238 ~G~~~IViGtRSAvFaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 238 RGQARVVVGTRSAVFAPVEDLGLVAIWDDGD 268 (665)
T ss_pred CCCCcEEEEcceeEEeccCCCCEEEEEcCCc
Confidence 22221 23478999999999874
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00015 Score=81.41 Aligned_cols=66 Identities=27% Similarity=0.303 Sum_probs=55.3
Q ss_pred hCCCCCCChhHHHHHHHH----HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 138 KLNHENPVAIQAPASALI----ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~i----l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.+.+.+|.+.|.+.+-.+ ..|+.+++.||||+|||++|++|.+...... +..++|.++|+.|-.|+
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--------~~~viist~t~~lq~q~ 79 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--------GKKVIISTRTKALQEQL 79 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--------CCcEEEECCCHHHHHHH
Confidence 345568999999987544 3556699999999999999999999987654 46799999999999998
No 153
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.59 E-value=0.00056 Score=77.77 Aligned_cols=123 Identities=17% Similarity=0.097 Sum_probs=81.3
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----h
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV----R 213 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~----T 213 (494)
..++ .+++-|+.|+-.++.++-+++.++.|||||... -.++..+.... . ...+++++||-.-|..+. .
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~-~~~v~l~ApTg~AA~~L~e~~g~ 390 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----G-LLPVGLAAPTGRAAKRLGEVTGL 390 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----C-CceEEEEeCchHHHHHHHHhcCC
Confidence 3554 689999999999999999999999999999632 23333332221 0 146788899977776651 0
Q ss_pred -hhHHHHHHHhcCcc-----eecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 214 -RGRMIDLLCKNGVK-----ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 214 -Pgrl~dll~~~~~~-----~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
...+..+|...... .-+....++||+|||+++- ...+..++..++...++|++.=
T Consensus 391 ~a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvGD 451 (720)
T TIGR01448 391 TASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVGD 451 (720)
T ss_pred ccccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEECc
Confidence 11233444322111 0112457899999999654 3467788888888888888753
No 154
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.57 E-value=0.00046 Score=77.20 Aligned_cols=71 Identities=7% Similarity=0.042 Sum_probs=53.5
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccC-----CCcce-----------EEEEecccCHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS-----WLKSC-----------AFRFISEENAIYATD 348 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRa-----Gr~G~-----------aitfv~~~~~~~~~~ 348 (494)
....+.+.+-..+..|.|-|+|=.+.-..-..|..+=+|-+||+ ...|. -..|++..+..++..
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~ 560 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKA 560 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHH
Confidence 45667788888999999999998888787788888889999992 22332 334566678888888
Q ss_pred HHHHHHh
Q 042373 349 LVKAFEL 355 (494)
Q Consensus 349 i~~~l~~ 355 (494)
|++-++.
T Consensus 561 LqkEI~~ 567 (985)
T COG3587 561 LQKEIND 567 (985)
T ss_pred HHHHHHH
Confidence 8876553
No 155
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=97.48 E-value=0.0041 Score=70.21 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=44.3
Q ss_pred ccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc
Q 042373 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE 341 (494)
Q Consensus 288 ~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~ 341 (494)
.-.|.+|-..+.||++-+.+.||.||...++..=.|-++|+-|.| .+|.|++..
T Consensus 649 ~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 649 FVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred eEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 335566778899999999999999999999999999888866555 477888765
No 156
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.46 E-value=0.0016 Score=76.00 Aligned_cols=120 Identities=23% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCCCCCChhHHHHHHHHHcCCC-EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hh
Q 042373 139 LNHENPVAIQAPASALIISGLD-SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VR 213 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grd-vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~T 213 (494)
.|+ .+++-|.+|+..++.+++ +++.+..|+|||.. +-.++..+... |..++.++||---|..+ +.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--------G~~V~~~ApTGkAA~~L~e~tGi 412 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--------GYEVRGAALSGIAAENLEGGSGI 412 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--------CCeEEEecCcHHHHHHHhhccCc
Confidence 454 689999999999999776 57779999999974 33344433322 67899999998777665 11
Q ss_pred hhH-HHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecC
Q 042373 214 RGR-MIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSP 272 (494)
Q Consensus 214 Pgr-l~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSA 272 (494)
+.+ +..++..-......+...++||||||-++- ..++..++... +...++||+.=
T Consensus 413 ~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~garvVLVGD 469 (988)
T PRK13889 413 ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGAKVVLVGD 469 (988)
T ss_pred chhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCCEEEEECC
Confidence 112 222222100112346678899999998543 33566666644 45667777643
No 157
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.43 E-value=0.00053 Score=71.42 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=56.0
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------hhhh-------HHHHHHHhcCc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------VRRG-------RMIDLLCKNGV 226 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------~TPg-------rl~dll~~~~~ 226 (494)
+++.+..|||||+..+- ++..+.. ...+..+++++++..|...+ ..+. .+..++.....
T Consensus 4 ~~I~G~aGTGKTvla~~-l~~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALN-LAKELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSE 76 (352)
T ss_pred EEEEecCCcCHHHHHHH-HHHHhhc------cccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhccc
Confidence 67889999999986443 3333311 11266899999999998754 1011 11111211100
Q ss_pred ceecccceEEEEEcccchhcccC-------ChhHHHHHHHh
Q 042373 227 KITNLTRVTYLVLDEADRMFDMG-------FEPQITRIVQN 260 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~~g-------f~~~i~~Il~~ 260 (494)
........++||+||||+|...+ ...++..|+..
T Consensus 77 ~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 77 SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01234678999999999999832 24677777766
No 158
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.42 E-value=0.00054 Score=78.90 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=35.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.++.+..+||||||.+|+-.|+....... ..+.||+||+.+.-..+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-------~~~fii~vp~~aI~egv 105 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-------LFKFIIVVPTPAIKEGT 105 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-------CcEEEEEeCCHHHHHHH
Confidence 47889999999999999988776543321 45799999997765554
No 159
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.40 E-value=0.0022 Score=71.43 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=45.2
Q ss_pred ceeeccccccCCCCCCceEEEecCCCCCHhHHHh---hhccCCC-c-ceEEEEeccc---CHHHHHHHHH
Q 042373 290 LSIANSVRARGLDEKELELVINFDAPNDYEDYVH---HCCQSWL-K-SCAFRFISEE---NAIYATDLVK 351 (494)
Q Consensus 290 ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvh---R~GRaGr-~-G~aitfv~~~---~~~~~~~i~~ 351 (494)
.|++|-|..-|+++.+.+.||.||+-.++..=.| |+=|.|. + =.+|.|++.. +..|-++|-+
T Consensus 602 FLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 602 FLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred EEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 6788999999999999999999999888777777 4444443 2 2467788765 4445555544
No 160
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.39 E-value=0.0012 Score=73.59 Aligned_cols=119 Identities=23% Similarity=0.295 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh------------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------------ 212 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------------ 212 (494)
+++|+.|+-..+..+-+++.+++|||||..- .-++..+.... ......+++++||..-|..+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 5899999999999999999999999999643 22333332211 011356888899977766551
Q ss_pred ----------hhhHHHHHHHhcCcc------eecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 213 ----------RRGRMIDLLCKNGVK------ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 213 ----------TPgrl~dll~~~~~~------~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
....+..+|...... ..+.-.+++||||||-++ + .+.+..+++.+++..++|++.=
T Consensus 229 ~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~~~rlIlvGD 300 (615)
T PRK10875 229 TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALPPHARVIFLGD 300 (615)
T ss_pred chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcccCCEEEEecc
Confidence 112344455432111 112334689999999843 3 5678888999999988888753
No 161
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.38 E-value=0.0011 Score=68.42 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=85.2
Q ss_pred hCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----
Q 042373 138 KLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---- 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---- 211 (494)
-.|+.--...|.-|+..++.- .=|.+.++-|||||+..+...+...+.++. ..+.||.-|+..+...+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~------y~KiiVtRp~vpvG~dIGfLP 296 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR------YRKIIVTRPTVPVGEDIGFLP 296 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh------hceEEEecCCcCcccccCcCC
Confidence 367766677788888888865 345677999999999999888888877542 44677778998888777
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccce-------EEEEEcccchhcccCChhHHHHHH
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRV-------TYLVLDEADRMFDMGFEPQITRIV 258 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l-------~~lVlDEaD~ml~~gf~~~i~~Il 258 (494)
++-+.+-.++.++......|..+ .|+|+|||..|- ..++..|+
T Consensus 297 G~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT----pheikTil 372 (436)
T COG1875 297 GTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT----PHELKTIL 372 (436)
T ss_pred CchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC----HHHHHHHH
Confidence 33334445555544443344433 489999998776 45677777
Q ss_pred HhhcCCCcEEEe
Q 042373 259 QNIRPDRQAVLF 270 (494)
Q Consensus 259 ~~l~~~~Q~ilf 270 (494)
.+..++..++++
T Consensus 373 tR~G~GsKIVl~ 384 (436)
T COG1875 373 TRAGEGSKIVLT 384 (436)
T ss_pred HhccCCCEEEEc
Confidence 777655555543
No 162
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.29 E-value=0.0012 Score=66.16 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=47.8
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..|+ .|.+.|..++-.+..|+ |+.-.||=|||++..+|.+-+.+. |..+=|++.+..||..=
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD 134 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRD 134 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhcc
Confidence 3555 79999999998887777 999999999999999888877664 56788889999998763
No 163
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.26 E-value=0.0021 Score=71.39 Aligned_cols=120 Identities=23% Similarity=0.255 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh------------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------------ 212 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------------ 212 (494)
...|+.|+-.++..+-+++.++.|||||... .-++..+....+ ...++.+++.+||-.-|..+.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~---~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP---KQGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc---ccCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 4799999999999999999999999999643 233333332211 011357899999966555431
Q ss_pred ----------hhhHHHHHHHhcCc--c----eecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 213 ----------RRGRMIDLLCKNGV--K----ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 213 ----------TPgrl~dll~~~~~--~----~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+...+..+|..... . ..+...+++||||||-++- .+.+..+++.+++..++|++.=
T Consensus 223 ~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~rlIlvGD 294 (586)
T TIGR01447 223 AEALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTKLILLGD 294 (586)
T ss_pred chhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCEEEEECC
Confidence 01223334432211 0 0123357899999997433 4578888999999989888753
No 164
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.25 E-value=0.0033 Score=71.83 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=77.8
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre 206 (494)
+++..+...-..++ .+++-|..|+-.++.+ +-+++.++.|+|||.. +-.+..++... |..+++++||--
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~~-------g~~V~~~ApTg~ 407 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEAA-------GYRVIGAALSGK 407 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHhC-------CCeEEEEeCcHH
Confidence 34443333322333 5899999999999875 5668889999999954 32333333321 667999999987
Q ss_pred HHHhhh----hh-hHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEec
Q 042373 207 LVRQQV----RR-GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFS 271 (494)
Q Consensus 207 La~Qi~----TP-grl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfS 271 (494)
-|..+. .+ ..+..++..-......+...++||||||-++-. .++..++... +...++|++.
T Consensus 408 Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 408 AAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred HHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcCCEEEEEC
Confidence 776651 00 112222221001122466889999999986542 3455566533 3566776665
No 165
>PRK06526 transposase; Provisional
Probab=97.24 E-value=0.0017 Score=64.66 Aligned_cols=106 Identities=18% Similarity=0.111 Sum_probs=58.2
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh---hhhHHHHHHHhcCcceecc
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---RRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---TPgrl~dll~~~~~~~~~l 231 (494)
+-.+++++++||+|+|||....--. ..+... |-.+++ ....+|+.++. ..+.+.+.+. .+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~-~~a~~~--------g~~v~f-~t~~~l~~~l~~~~~~~~~~~~l~-------~l 157 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLG-IRACQA--------GHRVLF-ATAAQWVARLAAAHHAGRLQAELV-------KL 157 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHH-HHHHHC--------CCchhh-hhHHHHHHHHHHHHhcCcHHHHHH-------Hh
Confidence 3467899999999999996544322 333221 334444 44455666552 1122222222 25
Q ss_pred cceEEEEEcccchhcccCC-hhHHHHHHHhhcCCCcEEEecCCCChH
Q 042373 232 TRVTYLVLDEADRMFDMGF-EPQITRIVQNIRPDRQAVLFSPTFPPR 277 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT~~~~ 277 (494)
.+..+|||||+|.+..... ...+..++...-....+|+.|..-+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 6678999999997642211 223444544332334566666665443
No 166
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.24 E-value=0.001 Score=74.63 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=54.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------------
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------------- 211 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------------- 211 (494)
..+-+++-+.||+|||.-|.--+|..+..+.... ...+.+--|+|-.+.-+
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~----~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa 467 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA----SFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSA 467 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhccccc----cccceeccccccchHHHHHHHHHhhHHhhccccccccccccc
Confidence 3345567799999999999999999887654211 22355666777665544
Q ss_pred ----------hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 212 ----------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 212 ----------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
||-+-++.++.. -++.+.++++||.|.
T Consensus 468 ~prpyg~i~fctvgvllr~~e~------glrg~sh~i~deihe 504 (1282)
T KOG0921|consen 468 TPRPYGSIMFCTVGVLLRMMEN------GLRGISHVIIDEIHE 504 (1282)
T ss_pred ccccccceeeeccchhhhhhhh------cccccccccchhhhh
Confidence 556666666654 267788999999995
No 167
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.16 E-value=0.0011 Score=75.53 Aligned_cols=95 Identities=22% Similarity=0.272 Sum_probs=69.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|...--++..| -|+...||-|||+++.+|++-..+. |..+-|++++..||..-
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHH
Confidence 555 6888887766555544 5889999999999999999876654 66789999999998764
Q ss_pred ------------------------------hhhhHH-----HHHHHhcCcceecccceEEEEEcccchhc
Q 042373 212 ------------------------------VRRGRM-----IDLLCKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 212 ------------------------------~TPgrl-----~dll~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
+|+..| .|.+..... ....+.+.|.||||+|.||
T Consensus 150 y~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhccccc-ccccCccceEEEeccccee
Confidence 344443 555543211 1245788999999999976
No 168
>PRK08181 transposase; Validated
Probab=97.13 E-value=0.0041 Score=62.49 Aligned_cols=134 Identities=10% Similarity=0.109 Sum_probs=72.5
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceeccc
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~ 232 (494)
-.+++++++||+|+|||.... .+...+..+ |-. ++.++..+|..++.. -+.+...+. .+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~--------g~~-v~f~~~~~L~~~l~~a~~~~~~~~~l~-------~l~ 166 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAA-AIGLALIEN--------GWR-VLFTRTTDLVQKLQVARRELQLESAIA-------KLD 166 (269)
T ss_pred hcCceEEEEecCCCcHHHHHH-HHHHHHHHc--------CCc-eeeeeHHHHHHHHHHHHhCCcHHHHHH-------HHh
Confidence 367899999999999995333 233333332 333 455566778776511 011112222 356
Q ss_pred ceEEEEEcccchhcccCC-hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCccceeeccccccCCCCCCceEEEe
Q 042373 233 RVTYLVLDEADRMFDMGF-EPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKELELVIN 311 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILVaTdv~~rGlDi~~v~~VIn 311 (494)
++++|||||.+.+....+ ...+..|+...-....+|+.|..-+.+..... + +-.+++-++.|=+. -.++|.
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~---~--D~~~a~aildRL~h---~~~~i~ 238 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVF---P--DPAMTLAAVDRLVH---HATIFE 238 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhc---C--CccchhhHHHhhhc---CceEEe
Confidence 788999999987653322 23455555544334455555554443332221 1 23355556666443 345666
Q ss_pred cCC
Q 042373 312 FDA 314 (494)
Q Consensus 312 yd~ 314 (494)
++-
T Consensus 239 ~~g 241 (269)
T PRK08181 239 MNV 241 (269)
T ss_pred cCC
Confidence 654
No 169
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.04 E-value=0.00068 Score=77.00 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=48.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|+++|....-.+ .+.-|+...||.|||+++.+|+.-..+. |..+-|++++..||.+-
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD 133 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRD 133 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHH
Confidence 566 5888888765444 4567999999999999999999755443 66799999999999875
No 170
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.00 E-value=0.019 Score=64.25 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=39.6
Q ss_pred ccceeeccccccCCCCCCceEEEecCCCCCH------hHHHhhhccCCCcceEEEEecccC
Q 042373 288 CNLSIANSVRARGLDEKELELVINFDAPNDY------EDYVHHCCQSWLKSCAFRFISEEN 342 (494)
Q Consensus 288 ~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~------~~yvhR~GRaGr~G~aitfv~~~~ 342 (494)
.-.|++|-..+-||++...++||.||+--++ ++-.||+|-. +.=..|.||+...
T Consensus 830 fVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQt-kpVtV~rLItk~T 889 (941)
T KOG0389|consen 830 FVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQT-KPVTVYRLITKST 889 (941)
T ss_pred EEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCc-ceeEEEEEEecCc
Confidence 3457789999999999999999999996654 4444555432 2446788998864
No 171
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.00 E-value=0.0024 Score=66.85 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=70.5
Q ss_pred CChhHHHHHHHH------HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---hhh
Q 042373 144 PVAIQAPASALI------ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---VRR 214 (494)
Q Consensus 144 ptpiQ~~aip~i------l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---~TP 214 (494)
+++-|+.++..+ ..+..+++.++-|+|||. ++-.+...+... +..+++++||---|..+ .|-
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~~-------~~~~~~~a~tg~AA~~i~~G~T~ 72 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRSR-------GKKVLVTAPTGIAAFNIPGGRTI 72 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhccc-------cceEEEecchHHHHHhccCCcch
Confidence 567788888887 678899999999999985 444444444321 56899999999888776 111
Q ss_pred hHHHH---------H--HHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC
Q 042373 215 GRMID---------L--LCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP 263 (494)
Q Consensus 215 grl~d---------l--l~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~ 263 (494)
-++.. . +.........|+.+++||+||+-++. ......+...++.+..
T Consensus 73 hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~-~~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 73 HSFFGIPINNNEKSQCKISKNSRLRERLRKADVLIIDEISMVS-ADMLDAIDRRLRDIRK 131 (364)
T ss_pred HHhcCccccccccccccccccchhhhhhhhheeeecccccchh-HHHHHHHHHhhhhhhc
Confidence 00000 0 00111112347789999999997544 3445566666665544
No 172
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.98 E-value=0.018 Score=67.70 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=45.7
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccC-----C--CcceEEEEecccCHHHHHHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS-----W--LKSCAFRFISEENAIYATDLVKAFE 354 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRa-----G--r~G~aitfv~~~~~~~~~~i~~~l~ 354 (494)
....++||.+|.+--|.|.|.++... .|-|---...+|-+.|. + ..|..+.|+. ....+.+++.
T Consensus 591 ~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g-----l~e~l~~Al~ 661 (962)
T COG0610 591 DDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG-----LKEALKKALK 661 (962)
T ss_pred CCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc-----hHHHHHHHHH
Confidence 56788999999999999999876554 78887666777766662 2 3577777766 4445555544
No 173
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.97 E-value=0.0029 Score=55.31 Aligned_cols=19 Identities=37% Similarity=0.212 Sum_probs=12.3
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.++-++++|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3567899999999999744
No 174
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=96.97 E-value=0.0077 Score=69.93 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=46.2
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHh---hhccCCC--cceEEEEecccC
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH---HCCQSWL--KSCAFRFISEEN 342 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvh---R~GRaGr--~G~aitfv~~~~ 342 (494)
+..+-.|+||-..+-||++-..+.||.||--.++..=+| |+-|-|. .=.+|-||+.+.
T Consensus 750 SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 750 SDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred CCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 566778999999999999999999999999888877777 4444343 235899999874
No 175
>PRK06921 hypothetical protein; Provisional
Probab=96.90 E-value=0.014 Score=58.61 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=42.2
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh-hHHHHHHHhcCcceecccceE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR-GRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP-grl~dll~~~~~~~~~l~~l~ 235 (494)
.+..++++|++|+|||... ..+...+..+. +..+++ ++..+|..++... ..+...+ ..+.+++
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~~-------g~~v~y-~~~~~l~~~l~~~~~~~~~~~-------~~~~~~d 179 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRKK-------GVPVLY-FPFVEGFGDLKDDFDLLEAKL-------NRMKKVE 179 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhhc-------CceEEE-EEHHHHHHHHHHHHHHHHHHH-------HHhcCCC
Confidence 3678999999999999532 33444444321 334444 4556666554211 1111111 2367889
Q ss_pred EEEEcccch
Q 042373 236 YLVLDEADR 244 (494)
Q Consensus 236 ~lVlDEaD~ 244 (494)
+||||+++.
T Consensus 180 lLiIDDl~~ 188 (266)
T PRK06921 180 VLFIDDLFK 188 (266)
T ss_pred EEEEecccc
Confidence 999999954
No 176
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=96.84 E-value=0.028 Score=59.99 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=37.1
Q ss_pred CCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc
Q 042373 141 HENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT 204 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT 204 (494)
+..+.|.|...+-..+ .|--+++.-.-|-|||+-.+- +...+... .| .||+||.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla--IA~yyraE-------wp-lliVcPA 250 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA--IARYYRAE-------WP-LLIVCPA 250 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH--HHHHHhhc-------Cc-EEEEecH
Confidence 4567899999877655 566788889999999986653 33333221 33 5888886
No 177
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.80 E-value=0.0017 Score=61.19 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=52.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~ 233 (494)
.++++++.|++|+|||.... .+...+... |..+ +.+++.+|...+-. .+...+.+. .+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~-ai~~~~~~~--------g~~v-~f~~~~~L~~~l~~~~~~~~~~~~~~-------~l~~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAV-AIANEAIRK--------GYSV-LFITASDLLDELKQSRSDGSYEELLK-------RLKR 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHH-HHHHHHHHT--------T--E-EEEEHHHHHHHHHCCHCCTTHCHHHH-------HHHT
T ss_pred cCeEEEEEhhHhHHHHHHHH-HHHHHhccC--------Ccce-eEeecCceeccccccccccchhhhcC-------cccc
Confidence 57899999999999997644 344445442 3344 44567788877611 111212222 3667
Q ss_pred eEEEEEcccchhcccC-ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 234 VTYLVLDEADRMFDMG-FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 234 l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+++|||||.-..-... ....+..|+...-....+|+.|--
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 8999999986432111 122233344333223456665553
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.78 E-value=0.002 Score=70.44 Aligned_cols=160 Identities=23% Similarity=0.227 Sum_probs=95.2
Q ss_pred HHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh--
Q 042373 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-- 212 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-- 212 (494)
.+...|+.++..-|..|+..+|+..=.|+++|+|+|||..-.- |+.|+..+. ...+|+.+|+.--+.|++
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~~-------~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQH-------AGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHhc-------CCceEEEcccchhHHHHHHH
Confidence 3445678899999999999999999899999999999987654 444554432 456899999988777762
Q ss_pred ---hhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----
Q 042373 213 ---RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----- 284 (494)
Q Consensus 213 ---TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----- 284 (494)
|--++++++.+... ..-+.+.+|-+-+-++..+. +.++.+.+.-. ..-.+|..=......+.+.
T Consensus 474 Ih~tgLKVvRl~aksRE--~~~S~vs~L~lh~~~~~~~~---pELq~l~klkd---e~gelS~sD~~k~~~lk~~~e~el 545 (935)
T KOG1802|consen 474 IHKTGLKVVRLCAKSRE--DIESDVSFLSLHEQLRNMDK---PELQKLLKLKD---EGGELSSSDEKKYRKLKRAAEKEL 545 (935)
T ss_pred HHhcCceEeeeehhhhh--hccCCccHHHHHHHHhccCc---HHHHHHHhhhh---hcccccchhhHHHHHHHHHHHHHH
Confidence 33333444433211 12345556654444443322 55555544321 1122333222222222222
Q ss_pred cCCccceeeccccccC--CCCCCceEEE
Q 042373 285 TNVCNLSIANSVRARG--LDEKELELVI 310 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rG--lDi~~v~~VI 310 (494)
-...+|+.||.+.+-+ |+.-.++.|+
T Consensus 546 l~~AdVIccTcv~Agd~rl~~~kfr~VL 573 (935)
T KOG1802|consen 546 LNQADVICCTCVGAGDRRLSKFKFRTVL 573 (935)
T ss_pred HhhcCEEEEecccccchhhccccccEEE
Confidence 5677888888887644 4443444454
No 179
>PRK04296 thymidine kinase; Provisional
Probab=96.76 E-value=0.0047 Score=58.69 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=53.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc---chhHHHhhh-------------hhhHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP---TGELVRQQV-------------RRGRMIDLLC 222 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P---TreLa~Qi~-------------TPgrl~dll~ 222 (494)
.=.++.++.|+|||...+- ++.++... +.+++|+.| +|....+++ .+..+.+.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~-~~~~~~~~--------g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~ 73 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ-RAYNYEER--------GMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIE 73 (190)
T ss_pred EEEEEECCCCCHHHHHHHH-HHHHHHHc--------CCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHH
Confidence 3467889999999965443 34333221 557788877 244322221 1222333332
Q ss_pred hcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 223 KNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 223 ~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
. .-.+.++||+||++.+- .+++..+++.+.+....+++++
T Consensus 74 ~------~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 74 E------EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred h------hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEe
Confidence 2 12367899999997542 3456667777555444555544
No 180
>PRK08116 hypothetical protein; Validated
Probab=96.76 E-value=0.015 Score=58.41 Aligned_cols=102 Identities=12% Similarity=0.167 Sum_probs=56.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-hh-----hHHHHHHHhcCcceeccc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-RR-----GRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-TP-----grl~dll~~~~~~~~~l~ 232 (494)
..++++|++|+|||.... .+.+.+..+ +.. ++..+..+|...+. +- ....+++. .+.
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~--------~~~-v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~-------~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK--------GVP-VIFVNFPQLLNRIKSTYKSSGKEDENEIIR-------SLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc--------CCe-EEEEEHHHHHHHHHHHHhccccccHHHHHH-------Hhc
Confidence 459999999999996433 466666543 223 34445666665541 10 00111121 256
Q ss_pred ceEEEEEcccch--hcccCChhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 233 RVTYLVLDEADR--MFDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 233 ~l~~lVlDEaD~--ml~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
+.++||||+++. ..++. ...+..|+... .....+|+.|..-+.++
T Consensus 178 ~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 178 NADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred CCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 778999999954 33332 33444555543 34566766666554444
No 181
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.75 E-value=0.0033 Score=59.95 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHcCCC-EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 144 PVAIQAPASALIISGLD-SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grd-vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+.+-|..|+-.+++... .++.||.|||||.. +.-++..+...........+..+||++||..-+.++
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~ 69 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNI 69 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHH
Confidence 57889999999999998 99999999999943 334555552110000012267899999999998876
No 182
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.74 E-value=0.011 Score=51.23 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=18.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l 183 (494)
++.+++.|++|+|||. .+.-+...+
T Consensus 19 ~~~v~i~G~~G~GKT~-l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTT-LARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHH-HHHHHHHHh
Confidence 6889999999999995 333344333
No 183
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.73 E-value=0.018 Score=67.83 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 127 GLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 127 ~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
++++..+......++ .+++-|..++-.+..+ +=++++++-|+|||... -++...+... |..++.++||-
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~--------G~~V~g~ApTg 435 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEAA--------GYRVVGGALAG 435 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--------CCeEEEEcCcH
Confidence 344555554444443 6899999999988654 55788899999999633 2333333221 66889999997
Q ss_pred hHHHhh----hhhh-HHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhc-CCCcEEEecC
Q 042373 206 ELVRQQ----VRRG-RMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR-PDRQAVLFSP 272 (494)
Q Consensus 206 eLa~Qi----~TPg-rl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-~~~Q~ilfSA 272 (494)
--|..+ +.+. .+..++..-......+..-++||||||-++- ..++..++..+. ...++||+.=
T Consensus 436 kAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~garvVLVGD 504 (1102)
T PRK13826 436 KAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAGAKLVLVGD 504 (1102)
T ss_pred HHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCCEEEEECC
Confidence 776655 1111 1223221110112346677899999998543 356667777764 5677777654
No 184
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.68 E-value=0.004 Score=70.87 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=52.4
Q ss_pred CCCCCCChhHHHHHHHH----HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALI----ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~i----l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+-|..+.|.|.+.+-.+ ..|.++++.||||+|||++-+.|.+..+...+ ..++.++.+.|..=..|+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~------~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP------EVRKIIYASRTHSQLEQA 76 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc------ccccEEEEcccchHHHHH
Confidence 34666799998876554 47899999999999999999999999875432 146788888887766664
No 185
>PF13245 AAA_19: Part of AAA domain
Probab=96.63 E-value=0.0055 Score=49.62 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 152 SALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 152 ip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
|-..+++..+ ++.++.|||||...+--+...+.... .. +..+||++||+..+..+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~----~~-~~~vlv~a~t~~aa~~l 58 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA----DP-GKRVLVLAPTRAAADEL 58 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc----CC-CCeEEEECCCHHHHHHH
Confidence 4433445554 55999999999655444444432111 11 45799999999999875
No 186
>PRK12377 putative replication protein; Provisional
Probab=96.60 E-value=0.013 Score=58.32 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=56.0
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hh-HHHHHHHhcCcceecccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RG-RMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pg-rl~dll~~~~~~~~~l~~ 233 (494)
..++++.|++|+|||.. +..+...+..+ +.. ++.++..+|..++-. .+ ...+++ -.+.+
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~--------g~~-v~~i~~~~l~~~l~~~~~~~~~~~~~l-------~~l~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAK--------GRS-VIVVTVPDVMSRLHESYDNGQSGEKFL-------QELCK 163 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHc--------CCC-eEEEEHHHHHHHHHHHHhccchHHHHH-------HHhcC
Confidence 36899999999999953 23344444432 333 455566777776511 00 111222 23678
Q ss_pred eEEEEEcccchhcccCC-hhHHHHHHHhh-cCCCcEEEecCC
Q 042373 234 VTYLVLDEADRMFDMGF-EPQITRIVQNI-RPDRQAVLFSPT 273 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf-~~~i~~Il~~l-~~~~Q~ilfSAT 273 (494)
+++|||||++......+ ...+..|+..- .....+++.|--
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999965543222 22344444433 345677776654
No 187
>PRK06893 DNA replication initiation factor; Validated
Probab=96.57 E-value=0.0088 Score=58.51 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=54.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
..++++||+|+|||... ..+.+.+..+ +..++++.-.. .. ...+ +.+. .+.+.++||
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~--------~~~~~y~~~~~-~~--~~~~----~~~~-------~~~~~dlLi 96 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYLLN--------QRTAIYIPLSK-SQ--YFSP----AVLE-------NLEQQDLVC 96 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--------CCCeEEeeHHH-hh--hhhH----HHHh-------hcccCCEEE
Confidence 34789999999999532 2233333322 44566655431 11 1111 1222 255778999
Q ss_pred Ecccchhccc-CChhHHHHHHHhhcC-CCcEEEecCCCChH
Q 042373 239 LDEADRMFDM-GFEPQITRIVQNIRP-DRQAVLFSPTFPPR 277 (494)
Q Consensus 239 lDEaD~ml~~-gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~~ 277 (494)
+||+|.+... .+...+..++..+.. +.+++++|++.++.
T Consensus 97 lDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 97 LDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred EeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 9999988633 233455566665543 34566777766544
No 188
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.53 E-value=0.007 Score=65.90 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+.+-|.+|+...++.+++ ++++|+|+|||.....-+.+.+.. +.++||..||++-+.-+
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNi 245 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNI 245 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHH
Confidence 36788999999999988765 666999999998876655554433 56899999998877665
No 189
>PRK08727 hypothetical protein; Validated
Probab=96.52 E-value=0.0093 Score=58.51 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=51.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
..++++|++|+|||-... .+...+..+ +.+++++. ..++.. .+.+.+. .+.++.+||
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~--------~~~~~y~~-~~~~~~------~~~~~~~-------~l~~~dlLi 98 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQA--------GRSSAYLP-LQAAAG------RLRDALE-------ALEGRSLVA 98 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--------CCcEEEEe-HHHhhh------hHHHHHH-------HHhcCCEEE
Confidence 458999999999995322 333333322 45666654 334332 2223332 245678999
Q ss_pred EcccchhcccC-ChhHHHHHHHhhcC-CCcEEEecCCCC
Q 042373 239 LDEADRMFDMG-FEPQITRIVQNIRP-DRQAVLFSPTFP 275 (494)
Q Consensus 239 lDEaD~ml~~g-f~~~i~~Il~~l~~-~~Q~ilfSAT~~ 275 (494)
+||+|.+.... ....+..++..+.. ..++|+.|...|
T Consensus 99 IDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p 137 (233)
T PRK08727 99 LDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMP 137 (233)
T ss_pred EeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 99999886432 22234444444432 334444444333
No 190
>PRK05642 DNA replication initiation factor; Validated
Probab=96.50 E-value=0.011 Score=58.21 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=55.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
+.++++|++|+|||-. +-.+...+..+ +..++++. ..++.... .+++. .+.++++||
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~~--------~~~v~y~~-~~~~~~~~------~~~~~-------~~~~~d~Li 102 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQR--------GEPAVYLP-LAELLDRG------PELLD-------NLEQYELVC 102 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHhC--------CCcEEEee-HHHHHhhh------HHHHH-------hhhhCCEEE
Confidence 5688999999999964 33334444321 44566654 45555431 11221 245667999
Q ss_pred Ecccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 239 LDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 239 lDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
+|++|.+... .+...+..+++.+......++++++.++
T Consensus 103 iDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 103 LDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred EechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 9999977533 3345577777766543333455555443
No 191
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.022 Score=59.02 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=58.9
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.+++++++|+||+|||... ..+...+... +..+ +..+..+|..++.. .++-.-... ....-.+.++++
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~~--------g~~V-~y~t~~~l~~~l~~-~~~~~~~~~-~~~~~~l~~~DL 249 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLDR--------GKSV-IYRTADELIEILRE-IRFNNDKEL-EEVYDLLINCDL 249 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHC--------CCeE-EEEEHHHHHHHHHH-HHhccchhH-HHHHHHhccCCE
Confidence 3589999999999999632 3444445432 3344 44566777665421 000000000 000124678899
Q ss_pred EEEcccchhcccCC-hhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 237 LVLDEADRMFDMGF-EPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 237 lVlDEaD~ml~~gf-~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
||||+.+......| ...+..|+... .....+|+.|.--+.++
T Consensus 250 LIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 250 LIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 99999987643333 23455555443 33455655555444443
No 192
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.47 E-value=0.032 Score=55.28 Aligned_cols=104 Identities=16% Similarity=0.214 Sum_probs=60.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-hh----hHHHHHHHhcCcceecccc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-RR----GRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-TP----grl~dll~~~~~~~~~l~~ 233 (494)
..+++++++|+|||.... .+..++... +..++++ +..+|...+. +- ....+++. .+.+
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~--------g~~v~~i-t~~~l~~~l~~~~~~~~~~~~~~l~-------~l~~ 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR--------GKSVLII-TVADIMSAMKDTFSNSETSEEQLLN-------DLSN 162 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc--------CCeEEEE-EHHHHHHHHHHHHhhccccHHHHHH-------Hhcc
Confidence 479999999999996433 445555432 3344444 5666665431 10 00111221 2567
Q ss_pred eEEEEEcccchhcccCChh-HHHHHHHh-hcCCCcEEEecCCCChHHH
Q 042373 234 VTYLVLDEADRMFDMGFEP-QITRIVQN-IRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~-~i~~Il~~-l~~~~Q~ilfSAT~~~~v~ 279 (494)
+++|||||++......+.. .+..|+.. ......+++.|.--+.++.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 8999999999876444433 34445543 3345777777765554444
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.42 E-value=0.015 Score=49.89 Aligned_cols=76 Identities=21% Similarity=0.190 Sum_probs=41.7
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh------------------hhhhhHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------------------QVRRGRMID 219 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q------------------i~TPgrl~d 219 (494)
++.+++++|+|||||..... ++..+... +..++++.+....... ......+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP--------GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALA 72 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC--------CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHH
Confidence 56789999999999973322 22222110 1246777666433211 011122222
Q ss_pred HHHhcCcceecccceEEEEEcccchhcccCC
Q 042373 220 LLCKNGVKITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 220 ll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
.... ....++++||++++.....
T Consensus 73 ~~~~--------~~~~viiiDei~~~~~~~~ 95 (148)
T smart00382 73 LARK--------LKPDVLILDEITSLLDAEQ 95 (148)
T ss_pred HHHh--------cCCCEEEEECCcccCCHHH
Confidence 2222 1258999999999886543
No 194
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.25 E-value=0.026 Score=57.32 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=49.9
Q ss_pred ccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH----------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC
Q 042373 124 RQTGLTTKILETFSKLNHENPVAIQAPASALII----------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193 (494)
Q Consensus 124 ~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il----------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~ 193 (494)
-.+.|++.++. .| .++..|.+++-... .++-.++--.||.||-..-.--|+.+++..
T Consensus 24 y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 34567776554 22 46888888876554 235667778999999876666677777653
Q ss_pred CCCeEEEEccchhHHHhh
Q 042373 194 DSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 194 ~~p~aLIl~PTreLa~Qi 211 (494)
..++|.++.+..|-...
T Consensus 91 -r~r~vwvS~s~dL~~Da 107 (303)
T PF13872_consen 91 -RKRAVWVSVSNDLKYDA 107 (303)
T ss_pred -CCceEEEECChhhhhHH
Confidence 33588888887776554
No 195
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.018 Score=57.33 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=57.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcC--cceec-ccc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNG--VKITN-LTR 233 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~--~~~~~-l~~ 233 (494)
++.++++.|++|+|||..... +-..+.. ...-++++++-+|+.++. .....+. ..+.. +.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~---------~g~sv~f~~~~el~~~Lk------~~~~~~~~~~~l~~~l~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLK---------AGISVLFITAPDLLSKLK------AAFDEGRLEEKLLRELKK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH---------cCCeEEEEEHHHHHHHHH------HHHhcCchHHHHHHHhhc
Confidence 678999999999999975433 3334432 235677788999998762 1111100 01123 778
Q ss_pred eEEEEEcccchhcccCC-hhHHHHHHHhhcCCCcEEEecCC
Q 042373 234 VTYLVLDEADRMFDMGF-EPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+++|||||.-..-...+ ...+..++.+....+..++.|-.
T Consensus 168 ~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~ 208 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNL 208 (254)
T ss_pred CCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCC
Confidence 89999999875432221 23333444443333333444443
No 196
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.22 E-value=0.021 Score=54.93 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=49.6
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++.++++|++|+|||..... +....... +.. ++.++...+... ..+++.. +....+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~-~~~~~~~~--------~~~-~~~i~~~~~~~~------~~~~~~~-------~~~~~l 93 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA-ACAAAEER--------GKS-AIYLPLAELAQA------DPEVLEG-------LEQADL 93 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHhc--------CCc-EEEEeHHHHHHh------HHHHHhh-------cccCCE
Confidence 357899999999999964332 22222211 222 333444554432 1222221 234468
Q ss_pred EEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCC
Q 042373 237 LVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 237 lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
|||||+|.+... .....+..++..+......++++++
T Consensus 94 LvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~ 131 (226)
T TIGR03420 94 VCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGR 131 (226)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 999999987643 2244555555554322223444444
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=96.21 E-value=0.05 Score=54.36 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecc
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l 231 (494)
+-.|.+++++||+|+|||.....-.. .+... |-.++++ +..+|..++.. .+++...+.. .+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~-~a~~~--------G~~v~~~-~~~~l~~~l~~a~~~~~~~~~~~~------~~ 162 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGY-EAVRA--------GIKVRFT-TAADLLLQLSTAQRQGRYKTTLQR------GV 162 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHH-HHHHc--------CCeEEEE-eHHHHHHHHHHHHHCCcHHHHHHH------Hh
Confidence 44588999999999999964432222 22211 4445554 45566655411 1222222221 13
Q ss_pred cceEEEEEcccchh
Q 042373 232 TRVTYLVLDEADRM 245 (494)
Q Consensus 232 ~~l~~lVlDEaD~m 245 (494)
....++|+||++.+
T Consensus 163 ~~~dlLiiDdlg~~ 176 (259)
T PRK09183 163 MAPRLLIIDEIGYL 176 (259)
T ss_pred cCCCEEEEcccccC
Confidence 45679999999864
No 198
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.16 E-value=0.017 Score=50.21 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=40.6
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
++++||.|+|||...- -+.+.+ +...+.+.. .++.... .+...+.+++.... ....-.+|+
T Consensus 1 ill~G~~G~GKT~l~~-~la~~l-----------~~~~~~i~~-~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~vl~ 63 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR-ALAQYL-----------GFPFIEIDG-SELISSYAGDSEQKIRDFFKKAK----KSAKPCVLF 63 (132)
T ss_dssp EEEESSTTSSHHHHHH-HHHHHT-----------TSEEEEEET-THHHTSSTTHHHHHHHHHHHHHH----HTSTSEEEE
T ss_pred CEEECcCCCCeeHHHH-HHHhhc-----------ccccccccc-ccccccccccccccccccccccc----ccccceeee
Confidence 6899999999996322 222222 223333333 3333221 33445556655421 111358999
Q ss_pred EcccchhcccC
Q 042373 239 LDEADRMFDMG 249 (494)
Q Consensus 239 lDEaD~ml~~g 249 (494)
+||+|.+....
T Consensus 64 iDe~d~l~~~~ 74 (132)
T PF00004_consen 64 IDEIDKLFPKS 74 (132)
T ss_dssp EETGGGTSHHC
T ss_pred eccchhccccc
Confidence 99999998765
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=96.14 E-value=0.052 Score=56.32 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=40.2
Q ss_pred cceEEEEEcccchhc-ccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMF-DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
...++|++|.+.++. +..+...+..+...+.++.-+++++||........++.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 456799999999986 34566778888887888888889999987765554443
No 200
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.05 E-value=0.01 Score=59.41 Aligned_cols=70 Identities=21% Similarity=0.140 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHH
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLC 222 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~ 222 (494)
+|+-|.++|-. ...++++.|..|||||.+.+--++..+.... ......|+|++|+..|..+ -.|+...+.
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~--~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEM--RERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHH--HHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHH--HHHHHHhcC
Confidence 47889998877 6889999999999999987766666665432 1134699999999999886 234444444
No 201
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.02 E-value=0.083 Score=51.40 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=78.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh---hhhHHHHHHHhcCcceecccceEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---RRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
-++++|++|+|||- .+-.+...+....+ +.+++++.. .++...+. ..+.+.++.. .+..+++
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~------~~~v~y~~~-~~f~~~~~~~~~~~~~~~~~~-------~~~~~Dl 100 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQHP------GKRVVYLSA-EEFIREFADALRDGEIEEFKD-------RLRSADL 100 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHCT------TS-EEEEEH-HHHHHHHHHHHHTTSHHHHHH-------HHCTSSE
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhccc------cccceeecH-HHHHHHHHHHHHcccchhhhh-------hhhcCCE
Confidence 48999999999997 34455555543211 445666543 34443321 0122222222 3668899
Q ss_pred EEEcccchhcccC-ChhHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHhcCCccceeeccccccCCCCCCceEEEecCC
Q 042373 237 LVLDEADRMFDMG-FEPQITRIVQNIR-PDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKELELVINFDA 314 (494)
Q Consensus 237 lVlDEaD~ml~~g-f~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~ 314 (494)
|+||.+|.+.... ....+..+++.+. .+.|+|+.|...|..+
T Consensus 101 L~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l------------------------------------ 144 (219)
T PF00308_consen 101 LIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL------------------------------------ 144 (219)
T ss_dssp EEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT------------------------------------
T ss_pred EEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc------------------------------------
Confidence 9999999987532 2344555555542 3445544444433211
Q ss_pred CCCHhHHHhhhccCCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHH
Q 042373 315 PNDYEDYVHHCCQSWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLK 365 (494)
Q Consensus 315 P~s~~~yvhR~GRaGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~ 365 (494)
..-...++=|.+ .|.++.+-.+++.....-+.+.....+-.+|++..
T Consensus 145 ~~~~~~L~SRl~----~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~ 191 (219)
T PF00308_consen 145 SGLLPDLRSRLS----WGLVVELQPPDDEDRRRILQKKAKERGIELPEEVI 191 (219)
T ss_dssp TTS-HHHHHHHH----CSEEEEE----HHHHHHHHHHHHHHTT--S-HHHH
T ss_pred cccChhhhhhHh----hcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 111223444442 56777777777766666677777777777776553
No 202
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.02 E-value=0.026 Score=59.91 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=55.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~l~ 235 (494)
..++++|++|+|||... ..+...+..+.+ +..++++. ..++..++.. .+.+..+.. .+.+++
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~------~~~v~yi~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d 201 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNP------NAKVVYVS-SEKFTNDFVNALRNNKMEEFKE-------KYRSVD 201 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCC------CCcEEEEE-HHHHHHHHHHHHHcCCHHHHHH-------HHHhCC
Confidence 45789999999999643 344555543211 34566654 4444443210 001111111 245678
Q ss_pred EEEEcccchhcccC-ChhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 236 YLVLDEADRMFDMG-FEPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 236 ~lVlDEaD~ml~~g-f~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
+|||||+|.+.... ....+..++..+ ..+.++++.|...|..+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 99999999876432 123344455444 34566655444444433
No 203
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.2 Score=55.18 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=69.0
Q ss_pred ceeccCCCCCCCCCcccCC-CCHHHHHHHHhC-CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcC
Q 042373 109 LKIREKCAPKPIKTWRQTG-LTTKILETFSKL-NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186 (494)
Q Consensus 109 i~v~g~~~P~pi~~f~~l~-L~~~ll~~l~~~-g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~ 186 (494)
..+.|...|.+-.+|+++| ++..+.+.+.-. -+..|-.++.--+ .=-|-+|+++|+|+|||.. .+.+...
T Consensus 175 ~~~~~~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~l-----A~AiAge 246 (802)
T KOG0733|consen 175 QFVEGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSL-----ANAIAGE 246 (802)
T ss_pred hhhcccCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHH-----HHHHhhh
Confidence 4466666676667899997 444444333221 1455555444321 1138999999999999962 2222111
Q ss_pred CCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 187 PPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 187 ~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
. + .=++=++--|++.++ .+-.++.+++..... ..-++|++||.|.+.-
T Consensus 247 l-------~-vPf~~isApeivSGvSGESEkkiRelF~~A~~-----~aPcivFiDeIDAI~p 296 (802)
T KOG0733|consen 247 L-------G-VPFLSISAPEIVSGVSGESEKKIRELFDQAKS-----NAPCIVFIDEIDAITP 296 (802)
T ss_pred c-------C-CceEeecchhhhcccCcccHHHHHHHHHHHhc-----cCCeEEEeeccccccc
Confidence 1 1 123444555677776 456677777765321 1236889999999874
No 204
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.01 E-value=0.029 Score=55.09 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=50.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
++.++++||+|+|||-... .+.+.+..+ +..++++.- .+.... . .+++. .+.++++|
T Consensus 45 ~~~l~l~Gp~G~GKThLl~-a~~~~~~~~--------~~~v~y~~~-~~~~~~--~----~~~~~-------~~~~~dll 101 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH-AACAELSQR--------GRAVGYVPL-DKRAWF--V----PEVLE-------GMEQLSLV 101 (235)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHhC--------CCeEEEEEH-HHHhhh--h----HHHHH-------HhhhCCEE
Confidence 3679999999999995332 233333321 445555543 222211 1 12221 13345789
Q ss_pred EEcccchhccc-CChhHHHHHHHhhcC-CCcEEEecCCCCh
Q 042373 238 VLDEADRMFDM-GFEPQITRIVQNIRP-DRQAVLFSPTFPP 276 (494)
Q Consensus 238 VlDEaD~ml~~-gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~ 276 (494)
++||+|.+... .+...+..++..+.. +...+++|++.|+
T Consensus 102 iiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 102 CIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred EEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 99999988642 234455566655432 2223444444444
No 205
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.00 E-value=0.065 Score=53.35 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=47.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++++.||+|+|||...-+ +...+...... ....++.+....|..+. .+..++.+++.... -.+
T Consensus 43 ~~vll~GppGtGKTtlA~~-ia~~l~~~~~~-----~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~--------~~V 108 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI-LGKLFKEMNVL-----SKGHLIEVERADLVGEYIGHTAQKTREVIKKAL--------GGV 108 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH-HHHHHHhcCcc-----cCCceEEecHHHhhhhhccchHHHHHHHHHhcc--------CCE
Confidence 5789999999999964432 22222221100 11124444444454332 23444555565421 148
Q ss_pred EEEcccchhcccC---C-hhHHHHHHHhhc
Q 042373 237 LVLDEADRMFDMG---F-EPQITRIVQNIR 262 (494)
Q Consensus 237 lVlDEaD~ml~~g---f-~~~i~~Il~~l~ 262 (494)
|++||+|.|...+ | ...+..++..+.
T Consensus 109 L~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e 138 (261)
T TIGR02881 109 LFIDEAYSLARGGEKDFGKEAIDTLVKGME 138 (261)
T ss_pred EEEechhhhccCCccchHHHHHHHHHHHHh
Confidence 9999999987422 2 234555555543
No 206
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.99 E-value=0.025 Score=57.50 Aligned_cols=83 Identities=14% Similarity=0.278 Sum_probs=47.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC---CCCCeEEEEccchh--------HHHhhhhhh-------HHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG---DDSPVGLVMAPTGE--------LVRQQVRRG-------RMIDL 220 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~---~~~p~aLIl~PTre--------La~Qi~TPg-------rl~dl 220 (494)
.+++++|+|+.|||. +++++....+.... ..-|..+|-+|... +..+++.|. .+...
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~ 136 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQ 136 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHH
Confidence 589999999999997 55665543222111 12467777777633 222222221 11111
Q ss_pred HHhcCcceecccceEEEEEcccchhcccCC
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
.. ..+.--.+++||+||+|.++....
T Consensus 137 ~~----~llr~~~vrmLIIDE~H~lLaGs~ 162 (302)
T PF05621_consen 137 VL----RLLRRLGVRMLIIDEFHNLLAGSY 162 (302)
T ss_pred HH----HHHHHcCCcEEEeechHHHhcccH
Confidence 11 112234678999999999996543
No 207
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.99 E-value=0.024 Score=61.14 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=57.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh---hHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR---GRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP---grl~dll~~~~~~~~~l~~l~ 235 (494)
+.++++|++|+|||... -.+...+..+.+ +..++++ +..++..++... +.+..+.. .+++++
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~------~~~v~yi-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d 213 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNP------NAKVVYV-TSEKFTNDFVNALRNNTMEEFKE-------KYRSVD 213 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCC------CCeEEEE-EHHHHHHHHHHHHHcCcHHHHHH-------HHhcCC
Confidence 46899999999999633 334444443211 3345555 555555443110 11111111 245788
Q ss_pred EEEEcccchhcccC-ChhHHHHHHHhh-cCCCcEEEecCCCChHHH
Q 042373 236 YLVLDEADRMFDMG-FEPQITRIVQNI-RPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 236 ~lVlDEaD~ml~~g-f~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~ 279 (494)
+|||||+|.+.... ....+..++..+ ..+.++++.|...|..+.
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 99999999875432 223444555444 334566665555444443
No 208
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.95 E-value=0.056 Score=65.89 Aligned_cols=120 Identities=22% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhh--HHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhh
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAF--LLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRR 214 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlaf--llpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TP 214 (494)
.+++-|..|+-.++.. +-+++.+..|+|||... ++-++..+... .+..++.++||-.-+..+ +.-
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~-------~g~~V~glAPTgkAa~~L~e~Gi~A 907 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES-------ERPRVVGLGPTHRAVGEMRSAGVDA 907 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc-------cCceEEEEechHHHHHHHHHhCchH
Confidence 6899999999999965 77888999999999753 22333322211 156788899997776665 111
Q ss_pred hHHHHHHHhcCc----ceecccceEEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecCC
Q 042373 215 GRMIDLLCKNGV----KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSPT 273 (494)
Q Consensus 215 grl~dll~~~~~----~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSAT 273 (494)
..+..+|..... ....+...++||||||-++- ..++..++..++. +.++|++.=+
T Consensus 908 ~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~----~~~m~~ll~~~~~~garvVLVGD~ 967 (1623)
T PRK14712 908 QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALIAAGGGRAVASGDT 967 (1623)
T ss_pred hhHHHHhccccchhhcccCCCCCCcEEEEEcccccc----HHHHHHHHHhhhhCCCEEEEEcch
Confidence 123333432100 00112346899999998554 3455566666653 5667766543
No 209
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.92 E-value=0.036 Score=49.50 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.4
Q ss_pred ccceEEEEEcccchhccc
Q 042373 231 LTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~ 248 (494)
-.+..++|+||++.+++.
T Consensus 83 ~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 83 RGGDDLIILDELTRLVRA 100 (165)
T ss_pred CCCCEEEEEEcHHHHHHH
Confidence 356789999999988754
No 210
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.92 E-value=0.068 Score=54.13 Aligned_cols=75 Identities=23% Similarity=0.221 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
+.++++.+|+|||||..... +...+.... ....++ ++.+..-+|..+. .+...+..++... .. .
T Consensus 58 ~~~vll~G~pGTGKT~lA~~-ia~~l~~~g---~~~~~~--~v~v~~~~l~~~~~g~~~~~~~~~~~~a-------~~-g 123 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR-MAQILHRLG---YVRKGH--LVSVTRDDLVGQYIGHTAPKTKEILKRA-------MG-G 123 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH-HHHHHHHcC---Ccccce--EEEecHHHHhHhhcccchHHHHHHHHHc-------cC-c
Confidence 56899999999999965422 111121111 001122 3333334555433 2223334444431 11 5
Q ss_pred EEEEcccchhc
Q 042373 236 YLVLDEADRMF 246 (494)
Q Consensus 236 ~lVlDEaD~ml 246 (494)
+|+|||+|.|.
T Consensus 124 vL~iDEi~~L~ 134 (284)
T TIGR02880 124 VLFIDEAYYLY 134 (284)
T ss_pred EEEEechhhhc
Confidence 89999999884
No 211
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.87 E-value=0.013 Score=59.36 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----hhhhHHHHHHHhcCcceecccc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-----VRRGRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-----~TPgrl~dll~~~~~~~~~l~~ 233 (494)
-+.++++|.|+|||-+.++ .-+.++- +... .-+++=++-+-|-...+ -...++....... .-.....
T Consensus 58 p~~LFyGPpGTGKTStala-far~L~~-~~~~----~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~--~~~~~~~ 129 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALA-FARALNC-EQLF----PCRVLELNASDERGISVVREKIKNFAKLTVLLKRS--DGYPCPP 129 (346)
T ss_pred ceEEeeCCCCCcHhHHHHH-HHHHhcC-cccc----ccchhhhcccccccccchhhhhcCHHHHhhccccc--cCCCCCc
Confidence 4789999999999976554 3333332 1000 01112122222222221 1112222222111 1123456
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHH
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
.+.+||||||.|... -+..+.+.++.......+++...-+..-+..+
T Consensus 130 fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 130 FKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred ceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 789999999999853 35667777777767777777766544333333
No 212
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.85 E-value=0.044 Score=53.65 Aligned_cols=80 Identities=26% Similarity=0.344 Sum_probs=59.4
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHc---CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS---GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~---grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
.+|+....+.+++=.+.. ++ -..+.|.+..-.+++ |+|.+...-.|.|||.+ ++|++..++.+. ...
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg-------~~L 72 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG-------SRL 72 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC-------CcE
Confidence 468777888888766643 34 578999999988885 58999999999999964 779998887653 345
Q ss_pred EEEEccchhHHHhh
Q 042373 198 GLVMAPTGELVRQQ 211 (494)
Q Consensus 198 aLIl~PTreLa~Qi 211 (494)
+.+++|. .|..|.
T Consensus 73 vrviVpk-~Ll~q~ 85 (229)
T PF12340_consen 73 VRVIVPK-ALLEQM 85 (229)
T ss_pred EEEEcCH-HHHHHH
Confidence 6666663 355554
No 213
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.062 Score=56.84 Aligned_cols=109 Identities=9% Similarity=-0.008 Sum_probs=58.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhHH-Hhhh--------------hhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GELV-RQQV--------------RRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reLa-~Qi~--------------TPgrl~dll 221 (494)
++.+++++|||+|||.+..--......... ..+...+||-+-| |.-+ .|.. ++..+...+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~----~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L 249 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD----DKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc----cCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH
Confidence 457889999999999765432222111110 0113345555554 3333 2331 222232222
Q ss_pred HhcCcceecccceEEEEEcccchhcccC-ChhHHHHHHHhhcCC-CcEEEecCCCChH
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFDMG-FEPQITRIVQNIRPD-RQAVLFSPTFPPR 277 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~-~Q~ilfSAT~~~~ 277 (494)
. .+++.++|++|++.++.... ....+..++..+.+. .-++.+|||....
T Consensus 250 ~-------~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 250 T-------QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred H-------HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 2 24678999999999876321 123444455544433 3457789987643
No 214
>CHL00181 cbbX CbbX; Provisional
Probab=95.78 E-value=0.096 Score=53.15 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
|.++++.+|+|+|||...-.- ...+.... ....++ ++-+....|..+. .|..+...++.... =.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l-a~~~~~~g---~~~~~~--~~~v~~~~l~~~~~g~~~~~~~~~l~~a~--------gg 124 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM-ADILYKLG---YIKKGH--LLTVTRDDLVGQYIGHTAPKTKEVLKKAM--------GG 124 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH-HHHHHHcC---CCCCCc--eEEecHHHHHHHHhccchHHHHHHHHHcc--------CC
Confidence 567999999999999755432 22222111 001122 3334444555443 23334444444321 15
Q ss_pred EEEEcccchhccc----CChh-HHHHHHHhhcCC-CcEEEecCCCChHHHHH
Q 042373 236 YLVLDEADRMFDM----GFEP-QITRIVQNIRPD-RQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 236 ~lVlDEaD~ml~~----gf~~-~i~~Il~~l~~~-~Q~ilfSAT~~~~v~~l 281 (494)
+|++||+|.|... .+.. .+..++..+... ..++++-|+.+..+..+
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~ 176 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKF 176 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 8999999998532 1333 344444444221 22334445555544433
No 215
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.77 E-value=0.1 Score=48.32 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=42.6
Q ss_pred ccceEEEEEcccchhcccCC--hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGF--EPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf--~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
...+++|||||+=..+..|+ .+.+..+++..+...-+|+.+-..|+++..+|.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998888886 457777788777777888888889988887764
No 216
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.77 E-value=0.043 Score=59.16 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=60.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCc--ceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGV--KITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~--~~~~l~~l~~ 236 (494)
+.++++|++|+|||.. +-.+...+... +..++++.. ..+..++ .+.+..+.. ....++++++
T Consensus 142 npl~L~G~~G~GKTHL-l~Ai~~~l~~~--------~~~v~yi~~-~~f~~~~------~~~l~~~~~~~f~~~~~~~dv 205 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL-MQAAVHALRES--------GGKILYVRS-ELFTEHL------VSAIRSGEMQRFRQFYRNVDA 205 (445)
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHHHHc--------CCCEEEeeH-HHHHHHH------HHHHhcchHHHHHHHcccCCE
Confidence 4689999999999963 23444444332 455666653 4444432 111111100 0012467889
Q ss_pred EEEcccchhcccC-ChhHHHHHHHhh-cCCCcEEEecCCCChHHHHH
Q 042373 237 LVLDEADRMFDMG-FEPQITRIVQNI-RPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 237 lVlDEaD~ml~~g-f~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~~l 281 (494)
|++||+|.+.... ....+..++..+ ....|+|+.|.+.|..+..+
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 9999999886532 234455555544 24567777766666665443
No 217
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.73 E-value=0.056 Score=55.70 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=44.3
Q ss_pred HHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 133 LETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
+..|.+.|+ +++.|...+.. +..+++++++++|||||| .++-.++..+...++ .-+.+++-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~~------~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQDP------TERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcCC------CceEEEEcCCCccc
Confidence 345555565 45677777765 456789999999999999 555666665532211 33567777777774
No 218
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.042 Score=57.78 Aligned_cols=109 Identities=18% Similarity=0.086 Sum_probs=56.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch-hH-HHhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG-EL-VRQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr-eL-a~Qi--------------~TPgrl~dl 220 (494)
.|+.+++++|||+|||....--....+.... . ...++|-+-+- .- ..|. .+++.+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G-----~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~ 209 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFG-----A-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLA 209 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----C-CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHH
Confidence 3678899999999999865543333332211 0 12344444332 11 1222 233333332
Q ss_pred HHhcCcceecccceEEEEEcccchhcccC-ChhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDMG-FEPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
+. .+.+.++|+||.+-+..... ...++..+.....+...++++|||.....
T Consensus 210 l~-------~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 210 LA-------ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred HH-------HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 32 35677899999997543211 22233333222223345778899976544
No 219
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.69 E-value=0.053 Score=58.56 Aligned_cols=105 Identities=18% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh-----hHHHHHHHhcCcceecccc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR-----GRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP-----grl~dll~~~~~~~~~l~~ 233 (494)
+.++++|++|+|||.. +-.+.+.+....+ +..++++. ..++...+..- +.+..+. ..+++
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~~------~~~v~yv~-~~~f~~~~~~~l~~~~~~~~~~~-------~~~~~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNFS------DLKVSYMS-GDEFARKAVDILQKTHKEIEQFK-------NEICQ 206 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhCC------CCeEEEEE-HHHHHHHHHHHHHHhhhHHHHHH-------HHhcc
Confidence 4589999999999942 2334444433211 44555554 45666554221 1111111 12567
Q ss_pred eEEEEEcccchhccc-CChhHHHHHHHhhc-CCCcEEEecCCCChHH
Q 042373 234 VTYLVLDEADRMFDM-GFEPQITRIVQNIR-PDRQAVLFSPTFPPRV 278 (494)
Q Consensus 234 l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v 278 (494)
+++||+||+|.+... .....+..++..+. .+.|+|+.|-..|..+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 889999999987532 22345555665553 4457777666555444
No 220
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.59 E-value=0.054 Score=60.25 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=59.6
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccceEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.+++++++|+|||.. +-.+.+.+.... .+..+++ +++.+++.+... -+.+.. +.. .+.++++
T Consensus 316 pL~LyG~sGsGKTHL-L~AIa~~a~~~~------~g~~V~Y-itaeef~~el~~al~~~~~~~-f~~------~y~~~DL 380 (617)
T PRK14086 316 PLFIYGESGLGKTHL-LHAIGHYARRLY------PGTRVRY-VSSEEFTNEFINSIRDGKGDS-FRR------RYREMDI 380 (617)
T ss_pred cEEEECCCCCCHHHH-HHHHHHHHHHhC------CCCeEEE-eeHHHHHHHHHHHHHhccHHH-HHH------HhhcCCE
Confidence 489999999999962 223344443211 0334544 455666655311 011111 111 2567899
Q ss_pred EEEcccchhcccC-ChhHHHHHHHhhcC-CCcEEEecCCCChHHH
Q 042373 237 LVLDEADRMFDMG-FEPQITRIVQNIRP-DRQAVLFSPTFPPRVE 279 (494)
Q Consensus 237 lVlDEaD~ml~~g-f~~~i~~Il~~l~~-~~Q~ilfSAT~~~~v~ 279 (494)
||||++|.+.... ....+..+++.+.. +.|+|+.|-..|..+.
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 9999999886433 23455566665543 5778776666555554
No 221
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.57 E-value=0.15 Score=59.53 Aligned_cols=141 Identities=20% Similarity=0.305 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCccee
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKIT 229 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~ 229 (494)
-.++..++--|+=++ .--+||--+ |.-+|+.+... |-++||++ |+ | +++|+|.. ++
T Consensus 1241 ~~~~r~lqFPelrLi-qyDcGKLQt-LAiLLqQLk~e--------ghRvLIfT-------QM-t--kmLDVLeq----FL 1296 (1958)
T KOG0391|consen 1241 TTAPRLLQFPELRLI-QYDCGKLQT-LAILLQQLKSE--------GHRVLIFT-------QM-T--KMLDVLEQ----FL 1296 (1958)
T ss_pred ccchhhhcCcchhee-ecccchHHH-HHHHHHHHHhc--------CceEEehh-------HH-H--HHHHHHHH----HH
Confidence 344555544333221 234677432 22345555443 67899975 32 2 67788875 56
Q ss_pred cccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCccceeeccccccCCCCCCceEE
Q 042373 230 NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKELELV 309 (494)
Q Consensus 230 ~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILVaTdv~~rGlDi~~v~~V 309 (494)
++....|+=||+.-.+ ++-..++++++.++++.+| ++.|-.-..||++-+.+.|
T Consensus 1297 nyHgylY~RLDg~t~v------EqRQaLmerFNaD~RIfcf--------------------ILSTrSggvGiNLtgADTV 1350 (1958)
T KOG0391|consen 1297 NYHGYLYVRLDGNTSV------EQRQALMERFNADRRIFCF--------------------ILSTRSGGVGINLTGADTV 1350 (1958)
T ss_pred hhcceEEEEecCCccH------HHHHHHHHHhcCCCceEEE--------------------EEeccCCccccccccCceE
Confidence 7888899999997643 4556677888888888776 6678888889999999999
Q ss_pred EecCCCCC------HhHHHhhhccCCCcceEEEEeccc
Q 042373 310 INFDAPND------YEDYVHHCCQSWLKSCAFRFISEE 341 (494)
Q Consensus 310 Inyd~P~s------~~~yvhR~GRaGr~G~aitfv~~~ 341 (494)
|.||--.+ ..+..||||+.. .=..|.||+++
T Consensus 1351 vFYDsDwNPtMDaQAQDrChRIGqtR-DVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1351 VFYDSDWNPTMDAQAQDRCHRIGQTR-DVHIYRLISER 1387 (1958)
T ss_pred EEecCCCCchhhhHHHHHHHhhcCcc-ceEEEEeeccc
Confidence 99998765 457788998853 34578888876
No 222
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.54 E-value=0.057 Score=54.97 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=62.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC--CEEE-EcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL--DSVA-ITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr--dvi~-~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
.+|+++-.++.+.+.|... +-.|+ ++++ +||+|+|||.... .+.+.+ +..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~la~-~l~~~~-----------~~~ 70 (316)
T PHA02544 18 STIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTVAK-ALCNEV-----------GAE 70 (316)
T ss_pred CcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHHHH-HHHHHh-----------Ccc
Confidence 5677777777776666532 12342 4555 8999999996422 222222 223
Q ss_pred EEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 198 GLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 198 aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
.+.+.+...-... ....+..+..... .....++|||||+|.+........+..+++..+...++|+.+
T Consensus 71 ~~~i~~~~~~~~~--i~~~l~~~~~~~~----~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 71 VLFVNGSDCRIDF--VRNRLTRFASTVS----LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred ceEeccCcccHHH--HHHHHHHHHHhhc----ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 4555554311111 0111222222211 123567999999998833323455666666666666666544
No 223
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.53 E-value=0.032 Score=62.74 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=47.5
Q ss_pred CCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++.|..|+..++.. ..++++||+|||||... .-++.++... +.++|+++||..-+.++
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~--------g~~VLv~a~sn~Avd~l 217 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR--------GLRVLVTAPSNIAVDNL 217 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc--------CCCEEEEcCcHHHHHHH
Confidence 46799999999999977 56788999999999644 3444444432 56899999999887765
No 224
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.48 E-value=0.11 Score=64.27 Aligned_cols=121 Identities=20% Similarity=0.194 Sum_probs=73.8
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----hhhH
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV----RRGR 216 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~----TPgr 216 (494)
.+++.|..|+-.++.+ +-+++.+..|+|||... -.++..+.... ...+..++.++||---|..+. .-..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~----~~~~~~V~glAPTgrAAk~L~e~Gi~A~T 1041 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP----ESERPRVVGLGPTHRAVGEMRSAGVDAQT 1041 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh----cccCceEEEECCcHHHHHHHHhcCcchhh
Confidence 6899999999999986 56788899999999643 23333332110 111567888999987666651 1112
Q ss_pred HHHHHHhcCc----ceecccceEEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecC
Q 042373 217 MIDLLCKNGV----KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSP 272 (494)
Q Consensus 217 l~dll~~~~~----~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSA 272 (494)
+..+|..... .......-++|||||+-++- ..++..++..++. ..++||+.=
T Consensus 1042 I~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~~~~~garvVLVGD 1098 (1747)
T PRK13709 1042 LASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALIAAGGGRAVSSGD 1098 (1747)
T ss_pred HHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHhhhcCCCEEEEecc
Confidence 3333432100 00112345899999998544 3456667776653 577777643
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.47 E-value=0.23 Score=53.20 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=59.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHH-HcCCCCCCCCCCCeEEEEccc-hh-HHHhh--------------hhhhHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHI-WEQPPVVPGDDSPVGLVMAPT-GE-LVRQQ--------------VRRGRMIDL 220 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l-~~~~~~~~~~~~p~aLIl~PT-re-La~Qi--------------~TPgrl~dl 220 (494)
|+.+++++|||+|||....--+.... .... ...++|-+-+ |. ...|. .++..+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-------~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK-------KKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------CeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHH
Confidence 66789999999999965443222222 1110 2334444444 32 22332 233444444
Q ss_pred HHhcCcceecccceEEEEEcccchhcc-cCChhHHHHHHHhh-cCCCcEEEecCCCCh-HHHHHHHh
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNI-RPDRQAVLFSPTFPP-RVEILARK 284 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~-~v~~l~~~ 284 (494)
+. .+.+.++|++|-+-+... ......+..++... .+..-.+++|||... .+..+...
T Consensus 294 l~-------~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 294 LE-------QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred HH-------HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 43 245679999999876432 11223455555522 233457788998765 44444433
No 226
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=95.44 E-value=0.0088 Score=68.60 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=75.4
Q ss_pred CCCChhHHHHHHHHHc-CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------
Q 042373 142 ENPVAIQAPASALIIS-GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~-grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------- 211 (494)
....|+|.+.+-.+.. ..++++.+|||+|||++|-+.++..+...+ +.++++++|-.+|+..-
T Consensus 926 ~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-------~~kvvyIap~kalvker~~Dw~~r~~ 998 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-------GSKVVYIAPDKALVKERSDDWSKRDE 998 (1230)
T ss_pred cccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC-------CccEEEEcCCchhhcccccchhhhcc
Confidence 3456677666544442 357888999999999999999998876544 67899999999998764
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHH
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRI 257 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~I 257 (494)
.||.+...+. +.+.+.-.+.++..+|+||.|++-+ +..+.++.|
T Consensus 999 ~~g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~-Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~i 1069 (1230)
T KOG0952|consen 999 LPGIKVIELTGDVTPDVKAVREADIVITTPEKWDGIS-RSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVI 1069 (1230)
T ss_pred cCCceeEeccCccCCChhheecCceEEcccccccCcc-ccccchhhhccccceeecccccccC-CCcceEEEE
Confidence 4555543333 3334445688999999999998764 444444433
No 227
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.41 E-value=0.086 Score=53.89 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=24.3
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
...++|||||+|.|... ....+..++...+....+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 34578999999987542 2345556666555555555543
No 228
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.37 E-value=0.09 Score=56.59 Aligned_cols=109 Identities=14% Similarity=0.229 Sum_probs=58.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~l~ 235 (494)
+.++++|++|+|||... -.+.+.+....+ +..++++.. .++..++.. .+.+..+... ...+++
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~------~~~v~yi~~-~~f~~~~~~~~~~~~~~~f~~~------~~~~~d 196 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEP------DLRVMYITS-EKFLNDLVDSMKEGKLNEFREK------YRKKVD 196 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCC------CCeEEEEEH-HHHHHHHHHHHhcccHHHHHHH------HHhcCC
Confidence 46899999999999633 234444443211 345666653 444443311 1111111111 112578
Q ss_pred EEEEcccchhcccC-ChhHHHHHHHhhc-CCCcEEEecCCCChHHHHH
Q 042373 236 YLVLDEADRMFDMG-FEPQITRIVQNIR-PDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 236 ~lVlDEaD~ml~~g-f~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l 281 (494)
+|++||+|.+.+.. ....+..++..+. ...|+|+.|..-|..+..+
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 99999999886532 2234445554443 3456666655555555444
No 229
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.35 E-value=0.072 Score=61.56 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=28.0
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
.+.+++||||+|+|...++ ..+.++++..+....+||.+ |-+..+.
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t-t~~~kLl 164 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT-TEPDKVI 164 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe-CChhhhh
Confidence 5778999999999986442 34444555544444555443 5444443
No 230
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.34 E-value=0.12 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=17.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+++++|++|+|||... --++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999743 3344444
No 231
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.28 E-value=0.015 Score=56.96 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
-++|+.+|+|+|||.+.+. +.+.++-..- .--+|=|--+.+-...+ -..++. ++..... ...-.+-+.+|
T Consensus 49 P~liisGpPG~GKTTsi~~-LAr~LLG~~~------ke~vLELNASdeRGIDv-VRn~IK-~FAQ~kv-~lp~grhKIiI 118 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC-LARELLGDSY------KEAVLELNASDERGIDV-VRNKIK-MFAQKKV-TLPPGRHKIII 118 (333)
T ss_pred CceEeeCCCCCchhhHHHH-HHHHHhChhh------hhHhhhccCccccccHH-HHHHHH-HHHHhhc-cCCCCceeEEE
Confidence 3899999999999987543 3333321100 00011111111111111 011222 2222111 12236788999
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
+||||.|.+ |-...+++.++-..+..++.+...+..
T Consensus 119 LDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 119 LDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred eeccchhhh-HHHHHHHHHHHHHcccchhhhhhcchh
Confidence 999999984 444555555555555555555444433
No 232
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.22 E-value=0.13 Score=64.60 Aligned_cols=107 Identities=24% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhH---HHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----
Q 042373 142 ENPVAIQAPASALIISG--LDSVAITETGSGKTLAFL---LPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---- 212 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafl---lpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---- 212 (494)
..+++.|..|+-.++.+ +-+++.+..|+|||.... -++.+.+... +..++.++||..-+..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--------g~~v~glApT~~Aa~~L~~~g~ 1089 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--------QLQVIGLAPTHEAVGELKSAGV 1089 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--------CCeEEEEeChHHHHHHHHhcCC
Confidence 36899999999999976 456777999999996541 2333333221 567888999988776651
Q ss_pred hhhHHHHHHHhcC--cceecccceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 213 RRGRMIDLLCKNG--VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 213 TPgrl~dll~~~~--~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
.-..+..+|.... .....+...++||||||-++- ..++..++..
T Consensus 1090 ~a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~----~~~~~~l~~~ 1135 (1960)
T TIGR02760 1090 QAQTLDSFLTDISLYRNSGGDFRNTLFILDESSMVS----NFQLTHATEL 1135 (1960)
T ss_pred chHhHHHHhcCcccccccCCCCcccEEEEEcccccc----HHHHHHHHHh
Confidence 1112333442110 011125567899999997544 2344444443
No 233
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.20 E-value=0.078 Score=56.73 Aligned_cols=57 Identities=28% Similarity=0.368 Sum_probs=36.5
Q ss_pred CCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 143 NPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.+-|+|.+.+--+... .--|+.-.-|.|||.-.+.-++..+ .+...||++|+.+|.+
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----------~ra~tLVvaP~VAlmQ 245 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----------DRAPTLVVAPTVALMQ 245 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----------ccCCeeEEccHHHHHH
Confidence 3456676665444333 2346667899999986654444322 1445999999999964
No 234
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.15 E-value=0.14 Score=64.39 Aligned_cols=117 Identities=10% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------h
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------V 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------~ 212 (494)
.+++-|..++-.++.. +=+++.++.|+|||.. +-.++. +.... |..+++++||..-+..+ .
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~-~~~~~-------G~~V~~lAPTgrAA~~L~e~~g~~A~ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLH-LASEQ-------GYEIQIITAGSLSAQELRQKIPRLAS 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHH-HHHhc-------CCeEEEEeCCHHHHHHHHHHhcchhh
Confidence 5899999999999876 5677889999999953 223333 33321 66899999998766655 1
Q ss_pred hhhHHHHHHHhcCc---------ceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecC
Q 042373 213 RRGRMIDLLCKNGV---------KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSP 272 (494)
Q Consensus 213 TPgrl~dll~~~~~---------~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSA 272 (494)
|--+++..+..... ....+..-++||||||-++- ..++..++... +.+.++||+.=
T Consensus 500 Ti~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVlvGD 565 (1960)
T TIGR02760 500 TFITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLILLND 565 (1960)
T ss_pred hHHHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEEEcC
Confidence 22222221111100 01124567899999998554 34566666655 35667776643
No 235
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.11 E-value=0.098 Score=50.67 Aligned_cols=92 Identities=12% Similarity=0.115 Sum_probs=49.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++.++++|++|+|||.... .+...+... +..++++.-. .+.. .+. .....++
T Consensus 41 ~~~~~~l~G~~G~GKT~La~-ai~~~~~~~--------~~~~~~i~~~-~~~~----------~~~-------~~~~~~~ 93 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ-ALVADASYG--------GRNARYLDAA-SPLL----------AFD-------FDPEAEL 93 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHhC--------CCcEEEEehH-HhHH----------HHh-------hcccCCE
Confidence 35679999999999995322 222222221 3345555432 2211 111 1234568
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcCCC-cEEEecCCCCh
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRPDR-QAVLFSPTFPP 276 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~~~-Q~ilfSAT~~~ 276 (494)
||+||+|.+-.. -...+..++....... .+++++++.++
T Consensus 94 liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 94 YAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred EEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 999999987532 2334555555444333 34666666543
No 236
>PF13173 AAA_14: AAA domain
Probab=95.07 E-value=0.15 Score=44.98 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=51.7
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
++-+++.|+.|+|||... .-++..+.. ....+++.=......+...+. +.+.+... ....-.+|
T Consensus 2 ~~~~~l~G~R~vGKTtll-~~~~~~~~~---------~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~i 65 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLL-KQLAKDLLP---------PENILYINFDDPRDRRLADPD-LLEYFLEL-----IKPGKKYI 65 (128)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHhcc---------cccceeeccCCHHHHHHhhhh-hHHHHHHh-----hccCCcEE
Confidence 566889999999999632 223333320 223444432222222222221 33333321 01145789
Q ss_pred EEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
++||+|.+-+ +...+..+...- ++.++++.+.
T Consensus 66 ~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 66 FIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred EEehhhhhcc--HHHHHHHHHHhc-cCceEEEEcc
Confidence 9999999864 566777777644 4556666544
No 237
>PRK04195 replication factor C large subunit; Provisional
Probab=94.98 E-value=0.14 Score=55.81 Aligned_cols=42 Identities=19% Similarity=0.072 Sum_probs=26.6
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHc---CCCEEEEcCCCCCchhh
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS---GLDSVAITETGSGKTLA 174 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~---grdvi~~a~TGSGKTla 174 (494)
.+|+++-.++..+..|... + ..... .+.++++||+|+|||..
T Consensus 11 ~~l~dlvg~~~~~~~l~~~-l-----------~~~~~g~~~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREW-I-----------ESWLKGKPKKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCHHHhcCCHHHHHHHHHH-H-----------HHHhcCCCCCeEEEECCCCCCHHHH
Confidence 3466666666666665442 0 00112 46899999999999963
No 238
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.93 E-value=0.12 Score=55.02 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=55.2
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.+|++++-.....+.|+.. -+..|.-.+..- +-.++.+++.+|+|+|||+.. ..+....
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA-----kalA~~l------- 203 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA-----KAVAHHT------- 203 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH-----HHHHHhc-------
Confidence 3456788887666655555442 222222222111 123588999999999999743 2222111
Q ss_pred CCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+...+.+.. .++.... .++..+.+++... .-..-.+|++||+|.++.
T Consensus 204 ~~~fi~i~~-s~l~~k~~ge~~~~lr~lf~~A-----~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 204 TATFIRVVG-SEFVQKYLGEGPRMVRDVFRLA-----RENAPSIIFIDEVDSIAT 252 (398)
T ss_pred CCCEEEEeh-HHHHHHhcchhHHHHHHHHHHH-----HhcCCeEEEEECHhhhcc
Confidence 112222222 2333222 2233344444321 112346899999999874
No 239
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.77 E-value=0.071 Score=60.49 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 143 NPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.|.|...+-.++ .+.+.++-+|||+|||++.+-..|....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q 66 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQ 66 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHH
Confidence 68999988776665 4578999999999999988766665543
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.69 E-value=0.17 Score=51.91 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccce
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~l 234 (494)
++.+++.|++|+|||.... .+...+... |..++++ ..-+|+.++.. -+.+.+.+. .+.++
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~~--------g~~v~~~-~~~~l~~~lk~~~~~~~~~~~l~-------~l~~~ 218 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAKK--------GVSSTLL-HFPEFIRELKNSISDGSVKEKID-------AVKEA 218 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc--------CCCEEEE-EHHHHHHHHHHHHhcCcHHHHHH-------HhcCC
Confidence 5689999999999996433 344444322 3344443 22244444311 111222222 36788
Q ss_pred EEEEEcccchhc--ccCChhHHHHHHHh-hcCCCcEEEecCCCChHHHH
Q 042373 235 TYLVLDEADRMF--DMGFEPQITRIVQN-IRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 235 ~~lVlDEaD~ml--~~gf~~~i~~Il~~-l~~~~Q~ilfSAT~~~~v~~ 280 (494)
++|||||...-. +|.....+..|+.. ......|++.|.--..+...
T Consensus 219 dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 219 PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred CEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 999999987532 22211233445543 24556676666654444444
No 241
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.24 Score=51.99 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 042373 328 SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADSF 371 (494)
Q Consensus 328 aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~ 371 (494)
.|..+.++.++..........+...+....+.-...+..+++.+
T Consensus 229 ~Gsp~~Al~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~ 272 (365)
T PRK07471 229 EGSVGRALRLAGGDGLALYRRLTALLDTLPRLDRRALHALADAA 272 (365)
T ss_pred CCCHHHHHHHhcccchHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 46677777777766666666666666643333333445555443
No 242
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.38 Score=49.64 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCCChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCC----------CCCCCCeEEEE--
Q 042373 141 HENPVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVV----------PGDDSPVGLVM-- 201 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~----------~~~~~p~aLIl-- 201 (494)
+..+.|+|..+|..+. +|| -+++++|.|+||+... .-+.+.++-..+.. ...+.|-..+|
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec
Confidence 4578899999998876 444 5899999999998543 33555555432111 01235667777
Q ss_pred ccchh--------HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 202 APTGE--------LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 202 ~PTre--------La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
.|..+ .+.|| ..+.+.+... -.....+++|||+||.|.... ...+-++++.-+.+..+|+.|.
T Consensus 81 ~p~~~~~k~~~~I~idqI---R~l~~~~~~~----p~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQV---REISQKLALT----PQYGIAQVVIVDPADAINRAA-CNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred CCCcccccccccccHHHH---HHHHHHHhhC----cccCCcEEEEeccHhhhCHHH-HHHHHHHhhCCCCCCeEEEEEC
Confidence 56432 12222 1233333322 123467899999999997432 3334445554445555666554
No 243
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.50 E-value=0.32 Score=51.66 Aligned_cols=113 Identities=18% Similarity=0.246 Sum_probs=62.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCC-eEEEEccc-h-hHHHhh--------------hhhhHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSP-VGLVMAPT-G-ELVRQQ--------------VRRGRMIDLL 221 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p-~aLIl~PT-r-eLa~Qi--------------~TPgrl~dll 221 (494)
+.+++++|||+|||.....-.. .+..+ +. .++|-+-| | ..+.|. .+|..+.+.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~~--------GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL 312 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHGK--------KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL 312 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHHc--------CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH
Confidence 5778999999999975544332 33221 33 34555533 3 233443 3455555555
Q ss_pred HhcCcceecccceEEEEEcccchhcccC-ChhHHHHHHHhhcCCCcEEEecCCCCh-HHHHHHHh
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFDMG-FEPQITRIVQNIRPDRQAVLFSPTFPP-RVEILARK 284 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~~Q~ilfSAT~~~-~v~~l~~~ 284 (494)
..- ..-.+.++|++|-+-+..... ....+..+++...+..-++.+|||... .+...++.
T Consensus 313 ~~l----k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 313 TYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred HHH----HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHH
Confidence 431 011257899999998865321 233344455544455556678987554 44555543
No 244
>PLN03025 replication factor C subunit; Provisional
Probab=94.50 E-value=0.16 Score=52.07 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=22.7
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
.+.+++|+||+|.|.... ...+.++++..+....+++
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il 134 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL 134 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE
Confidence 357899999999987533 3344555554444444443
No 245
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.39 E-value=0.061 Score=54.53 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=41.5
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCC
Q 042373 114 KCAPKPIKTWRQTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQP 187 (494)
Q Consensus 114 ~~~P~pi~~f~~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~ 187 (494)
..+|..|.+|+++++++-+.+.+.. .| =+++.+|||||||.. +..|+.+++...
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 4578999999999999988874432 22 278889999999965 567888887653
No 246
>PRK06620 hypothetical protein; Validated
Probab=94.32 E-value=0.088 Score=51.07 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=23.3
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhhc-CCCcEEEecCCCCh
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNIR-PDRQAVLFSPTFPP 276 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~ 276 (494)
+.++|++||+|.+-+ ..+..+++.+. .+.|+++.|.|.|+
T Consensus 85 ~~d~lliDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~ 125 (214)
T PRK06620 85 KYNAFIIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSR 125 (214)
T ss_pred cCCEEEEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCcc
Confidence 446899999995421 34555555554 34555555545444
No 247
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.29 E-value=0.47 Score=44.63 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=43.0
Q ss_pred cceEEEEEcccchhcccCC--hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDMGF--EPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf--~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
..+++|||||+-..++.|+ .+.+..+++..|+..-+|+..-..|+++..+|..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 5789999999999888886 4567778887777778888888889988887754
No 248
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.28 E-value=0.13 Score=47.82 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=21.6
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
+++.|++|+|||...+--+...+ .+ |..+++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~--------g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-AR--------GEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HC--------CCcEEEEEC
Confidence 68899999999964433333333 21 556777753
No 249
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.26 E-value=0.13 Score=53.12 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHhCCCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 135 TFSKLNHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
.+.+.|. .++.|...+-.++ .+++++++++||||||. ++-.++..+...++ +-+.+++=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~~------~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASAP------EDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCCC------CceEEEecCCcccc
Confidence 3445554 5667776665554 56799999999999995 44556665543221 23556666666764
No 250
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.22 E-value=0.14 Score=55.99 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCCcccCC-CCHHHHHHHHh--CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 120 IKTWRQTG-LTTKILETFSK--LNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 120 i~~f~~l~-L~~~ll~~l~~--~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
-.+|++++ +.+.+...... +-+..|.-+....++ ..+.+++++|+|+|||+.
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHH
Confidence 36788887 55544332222 222332222222221 246899999999999973
No 251
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.17 E-value=0.13 Score=56.21 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=18.1
Q ss_pred cCCccceeeccccccCCCCCCc
Q 042373 285 TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v 306 (494)
...++++.+.|.+-.|.||=++
T Consensus 328 dnpir~if~vd~lnegwdvlnl 349 (812)
T COG3421 328 DNPIRVIFSVDKLNEGWDVLNL 349 (812)
T ss_pred CCCeEEEEEeecccccchhhhh
Confidence 5678889999999999997554
No 252
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.15 E-value=0.32 Score=50.40 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCChhHHHHHHHHHcC----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-------------CCCCCeEEEEccch
Q 042373 143 NPVAIQAPASALIISG----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-------------GDDSPVGLVMAPTG 205 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~-------------~~~~p~aLIl~PTr 205 (494)
...|+|...|..++.. +-+++++|.|+|||.... -+...++-..+... ....|-..++.|..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~-~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~ 81 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE-RLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE 81 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC
Confidence 3579999999998855 257899999999995433 34444543221110 11357778887742
Q ss_pred h----HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEe
Q 042373 206 E----LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLF 270 (494)
Q Consensus 206 e----La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilf 270 (494)
. -+.|+ ..+.+.+.... .....+++|+|+||+|.... ...+-++++.-+.+..+|+.
T Consensus 82 ~~~~i~id~i---R~l~~~~~~~~----~~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~fiL~ 142 (328)
T PRK05707 82 ADKTIKVDQV---RELVSFVVQTA----QLGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVLLLI 142 (328)
T ss_pred CCCCCCHHHH---HHHHHHHhhcc----ccCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 1 12222 12333333221 24567889999999998532 22333344443333344433
No 253
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.13 Score=53.95 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=50.8
Q ss_pred HHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcC
Q 042373 152 SALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNG 225 (494)
Q Consensus 152 ip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~ 225 (494)
+|.++.| |-|+.++|+|+|||+.. ..+... ...+.+=+..-.|+... +.-++|+.+|-.-
T Consensus 234 mPe~F~GirrPWkgvLm~GPPGTGKTlLA-----KAvATE--------c~tTFFNVSsstltSKwRGeSEKlvRlLFem- 299 (491)
T KOG0738|consen 234 MPEFFKGIRRPWKGVLMVGPPGTGKTLLA-----KAVATE--------CGTTFFNVSSSTLTSKWRGESEKLVRLLFEM- 299 (491)
T ss_pred hHHHHhhcccccceeeeeCCCCCcHHHHH-----HHHHHh--------hcCeEEEechhhhhhhhccchHHHHHHHHHH-
Confidence 3556666 79999999999999732 222211 22455656666666555 5556777776531
Q ss_pred cceecccceEEEEEcccchhcc
Q 042373 226 VKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 226 ~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
..+.--+.+.+||+|.|..
T Consensus 300 ---ARfyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 300 ---ARFYAPSTIFIDEIDSLCS 318 (491)
T ss_pred ---HHHhCCceeehhhHHHHHh
Confidence 1233446789999999885
No 254
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.07 E-value=0.28 Score=56.36 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=55.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---hhhhHHHHHHHhcCcceecccce
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---~TPgrl~dll~~~~~~~~~l~~l 234 (494)
..++|+++|+|+|||...-. +.+.+.... ......+...+.+.++.-++-.. ....++..++..- .-..-
T Consensus 207 ~~n~LLvGppGvGKT~lae~-la~~i~~~~-vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l-----~~~~~ 279 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG-LAWRIVQGD-VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL-----EQDTN 279 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHHHhcC-CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH-----HhcCC
Confidence 46999999999999975322 222222211 00000122223222322222111 1123344443310 00122
Q ss_pred EEEEEcccchhcccCC----hhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 235 TYLVLDEADRMFDMGF----EPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf----~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
.+|++||+|.|+..|- ...+..++..+-....+.++.||-+++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 4899999999986542 22344455544344456666677666543
No 255
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.05 E-value=1.2 Score=49.00 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=55.5
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhHH-Hhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GELV-RQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reLa-~Qi--------------~TPgrl~dl 220 (494)
.|+-++++++||+|||.....-+........ ....+||-+.+ |..+ .|. .++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~------gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~a 422 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHA------PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL 422 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHH
Confidence 4678889999999999755332222221110 01233333333 3222 222 123344444
Q ss_pred HHhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCCh-HHHHHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPP-RVEILA 282 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~-~v~~l~ 282 (494)
+.. +.+.++|+||.+-++-.. ....++..+. ......-+++++++... .+..++
T Consensus 423 L~~-------l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 423 LER-------LRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred HHH-------hccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCChhHHHHHH
Confidence 432 456789999999764321 1112233222 22344557777887653 333333
No 256
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.93 E-value=0.18 Score=57.78 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=55.8
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|..+|.+++-...+.+.|.+. .+..|.-++..- +...+.+++++|+|||||+.. -.+..-.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la--kalA~e~---------- 511 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA--KAVATES---------- 511 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH--HHHHHhc----------
Confidence 3456788888777777776552 111111111110 112357999999999999632 2222211
Q ss_pred CCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. +|.+..-+|.... + +...+..++... .-..-++|++||+|.|+.
T Consensus 512 ~~~-fi~v~~~~l~~~~vGese~~i~~~f~~A-----~~~~p~iifiDEid~l~~ 560 (733)
T TIGR01243 512 GAN-FIAVRGPEILSKWVGESEKAIREIFRKA-----RQAAPAIIFFDEIDAIAP 560 (733)
T ss_pred CCC-EEEEehHHHhhcccCcHHHHHHHHHHHH-----HhcCCEEEEEEChhhhhc
Confidence 112 2222223443332 1 233344444321 122347899999999874
No 257
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.93 E-value=0.5 Score=47.62 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=65.2
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch--hHHHhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG--ELVRQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr--eLa~Qi--------------~TPgrl~dl 220 (494)
.+..+.+++++|+|||..+..-+.. +..+. ...++|-+.+. ....|. .+|..+.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~~~-------~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~ 145 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHGKK-------KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRA 145 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHHcC-------CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHH
Confidence 4578889999999999866543332 22110 23444544333 344444 234444444
Q ss_pred HHhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCC-hHHHHHHHh
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFP-PRVEILARK 284 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~-~~v~~l~~~ 284 (494)
+.. .....+.+++++|-+-++... .....+..++....+..-++.+|||.. ..+...++.
T Consensus 146 l~~----l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~ 207 (270)
T PRK06731 146 LTY----FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 207 (270)
T ss_pred HHH----HHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHH
Confidence 432 112246799999999886522 223344455555555545667999865 466566554
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.91 E-value=0.32 Score=46.58 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=60.6
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhHH-Hhhhh-----------------hhHHH-HH
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GELV-RQQVR-----------------RGRMI-DL 220 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reLa-~Qi~T-----------------Pgrl~-dl 220 (494)
+++++|||+|||....= +-.++..+. ...+||-+-| |.=| .|..+ |..+. +.
T Consensus 4 i~lvGptGvGKTTt~aK-LAa~~~~~~-------~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~ 75 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAK-LAARLKLKG-------KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREA 75 (196)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHHTT---------EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHH
T ss_pred EEEECCCCCchHhHHHH-HHHHHhhcc-------ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHH
Confidence 67889999999975432 222222211 3456666554 3222 33311 22222 22
Q ss_pred HHhcCcceecccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~ 280 (494)
+.. ...++.++|++|-+-+... ......+..++..+.+..-.+.+|||.......
T Consensus 76 l~~-----~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 76 LEK-----FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HHH-----HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred HHH-----HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 221 1234588999999976542 223456777777887777788899998776543
No 259
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.90 E-value=0.29 Score=47.92 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=32.4
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
++|+++|+|+|||...- ++.+-+. .....+-.|..+ .++.+..++.. +..=++|.+
T Consensus 52 h~lf~GPPG~GKTTLA~--IIA~e~~---------~~~~~~sg~~i~------k~~dl~~il~~-------l~~~~ILFI 107 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR--IIANELG---------VNFKITSGPAIE------KAGDLAAILTN-------LKEGDILFI 107 (233)
T ss_dssp EEEEESSTTSSHHHHHH--HHHHHCT-----------EEEEECCC--------SCHHHHHHHHT---------TT-EEEE
T ss_pred eEEEECCCccchhHHHH--HHHhccC---------CCeEeccchhhh------hHHHHHHHHHh-------cCCCcEEEE
Confidence 68999999999996332 2222211 222333334322 23334444542 344468999
Q ss_pred cccchhc
Q 042373 240 DEADRMF 246 (494)
Q Consensus 240 DEaD~ml 246 (494)
||.|+|-
T Consensus 108 DEIHRln 114 (233)
T PF05496_consen 108 DEIHRLN 114 (233)
T ss_dssp CTCCC--
T ss_pred echhhcc
Confidence 9999976
No 260
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.85 E-value=0.54 Score=45.73 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=28.5
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc---cchhHHHh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA---PTGELVRQ 210 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~---PTreLa~Q 210 (494)
.|.=+++.|++|+|||. |++-++.++..+. +..+++++ |..+++..
T Consensus 12 ~G~l~lI~G~~G~GKT~-~~~~~~~~~~~~~-------g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 12 PGDLIIIAARPSMGKTA-FALNIAENIAKKQ-------GKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCeEEEEEeCCCCCHHH-HHHHHHHHHHHhC-------CCceEEEeCCCCHHHHHHH
Confidence 35678889999999995 4554554444321 44677776 34444443
No 261
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.84 E-value=0.15 Score=55.56 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=54.7
Q ss_pred CCCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
.|-.+|+++.-.+.+...+...- +..|...+... .-..+.+++++|+|||||+.. -.+..-. +
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la--~alA~~~----------~ 113 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA--KAVAGEA----------G 113 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH--HHHHHHc----------C
Confidence 45677888876666655554310 22222222111 112367999999999999732 2222111 1
Q ss_pred CeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 196 PVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
.. ++-+..-++.... .+..++.+++..- .-..-.+|+|||+|.+..
T Consensus 114 ~~-~~~i~~~~~~~~~~g~~~~~l~~~f~~a-----~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 114 VP-FFSISGSDFVEMFVGVGASRVRDLFEQA-----KKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred CC-eeeccHHHHHHHHhcccHHHHHHHHHHH-----HhcCCCEEEEechhhhhh
Confidence 11 3333333333221 1233444554431 112235899999999874
No 262
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.84 E-value=0.35 Score=48.26 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 150 PASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
+++-.+..|+++++.+++|+|||...
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 34455668899999999999999744
No 263
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.74 E-value=0.23 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=19.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+..+++++|||||||... -.++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 3567899999999999643 3455554
No 264
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.65 E-value=0.36 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+++++||+|+|||.. +--++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 6899999999999964 33344444
No 265
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.53 E-value=0.94 Score=52.34 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=39.5
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-h---hHHHhh-----hhhhHHHHHHHhcCcc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-G---ELVRQQ-----VRRGRMIDLLCKNGVK 227 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-r---eLa~Qi-----~TPgrl~dll~~~~~~ 227 (494)
.|..+++++|+|+|||...- .+...+ . .+..-+-+.. + ++.... ..|+++...+.....
T Consensus 346 ~~~~lll~GppG~GKT~lAk-~iA~~l-~---------~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~- 413 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK-SIAKAL-N---------RKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT- 413 (775)
T ss_pred CCceEEEECCCCCCHHHHHH-HHHHHh-c---------CCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCc-
Confidence 34579999999999996332 222222 1 1111111111 1 111000 357777776654211
Q ss_pred eecccceEEEEEcccchhcc
Q 042373 228 ITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 228 ~~~l~~l~~lVlDEaD~ml~ 247 (494)
.-.+|+|||+|.+..
T Consensus 414 -----~~~villDEidk~~~ 428 (775)
T TIGR00763 414 -----KNPLFLLDEIDKIGS 428 (775)
T ss_pred -----CCCEEEEechhhcCC
Confidence 113799999999984
No 266
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.49 E-value=0.51 Score=43.63 Aligned_cols=105 Identities=16% Similarity=0.283 Sum_probs=57.6
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC------------CCCCCeEEEEccchh----HHHhhhhhhHHHHHHHh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP------------GDDSPVGLVMAPTGE----LVRQQVRRGRMIDLLCK 223 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~------------~~~~p~aLIl~PTre----La~Qi~TPgrl~dll~~ 223 (494)
-+|++++.|+||+. +..-+...++....... ....|-.+++.|... ...|+- .+.+.+..
T Consensus 21 a~L~~G~~g~gk~~-~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir---~i~~~~~~ 96 (162)
T PF13177_consen 21 ALLFHGPSGSGKKT-LALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR---EIIEFLSL 96 (162)
T ss_dssp EEEEECSTTSSHHH-HHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH---HHHHHCTS
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH---HHHHHHHH
Confidence 57999999999985 34445566654432211 023567777776644 233321 23333322
Q ss_pred cCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
. ..-...+++|+|+||.|... -...+.++++.-+....++|.+..
T Consensus 97 ~----~~~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 97 S----PSEGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp S-----TTSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-
T ss_pred H----HhcCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECC
Confidence 1 12357899999999998743 234455555555555555555443
No 267
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.47 E-value=0.69 Score=48.92 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=65.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH--HHhhh--------------hhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL--VRQQV--------------RRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL--a~Qi~--------------TPgrl~dll 221 (494)
++-+.++||||.|||..-.=-..+..+.. .....+||-+-|.-. +.|+- +|..|.+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~------~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK------KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc------cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 88999999999999975432222222111 114568888877443 45653 444444444
Q ss_pred HhcCcceecccceEEEEEcccchhc-ccCChhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF-DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
. .|+++++|.||=+-+=. |.....++..++....+.--.+.+|||.....
T Consensus 277 ~-------~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d 327 (407)
T COG1419 277 E-------ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYED 327 (407)
T ss_pred H-------HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHH
Confidence 3 47888999999887522 11233455555555545556777899875543
No 268
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.43 E-value=0.27 Score=50.18 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=41.2
Q ss_pred HHHHHhCCCCCCChhHHHHHHHH-HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 133 LETFSKLNHENPVAIQAPASALI-ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~i-l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
+..|.+.|. .++-|...+-.+ ..+++++++++||||||. ++-.++..+....+ .-+.+++=.+.||..
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~~~------~~ri~tiEd~~El~~ 176 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKNDP------TDRVVIIEDTRELQC 176 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhccCC------CceEEEECCchhhcC
Confidence 444555554 445555555544 456799999999999995 34445555533211 235666667777653
No 269
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.36 E-value=0.21 Score=52.21 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
.+.++++||+|+|||+.
T Consensus 156 p~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLL 172 (364)
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999963
No 270
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.34 E-value=0.19 Score=57.51 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=53.9
Q ss_pred CCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 119 PIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
+-.+|++++-....++.++++ -+..|.-.+... +-.++.+++++|+|+|||... -.+.... +
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la--raia~~~----------~ 237 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA--KAVANEA----------G 237 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH--HHHHHHh----------C
Confidence 346788887666666555442 111111111111 123578999999999999632 2222221 1
Q ss_pred CeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 196 PVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
...+.+ ..-++.... .+..++..++... .-..-.+|++||+|.+..
T Consensus 238 ~~~i~i-~~~~i~~~~~g~~~~~l~~lf~~a-----~~~~p~il~iDEid~l~~ 285 (733)
T TIGR01243 238 AYFISI-NGPEIMSKYYGESEERLREIFKEA-----EENAPSIIFIDEIDAIAP 285 (733)
T ss_pred CeEEEE-ecHHHhcccccHHHHHHHHHHHHH-----HhcCCcEEEeehhhhhcc
Confidence 122333 222333222 2233444444321 112336899999999874
No 271
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.26 E-value=0.67 Score=45.74 Aligned_cols=32 Identities=25% Similarity=0.150 Sum_probs=23.1
Q ss_pred CCChhHHHHHHHHH----cCC-CEEEEcCCCCCchhh
Q 042373 143 NPVAIQAPASALII----SGL-DSVAITETGSGKTLA 174 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~gr-dvi~~a~TGSGKTla 174 (494)
.+++.+.+++-.+. .+. .++++|++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 56777777766553 223 588999999999964
No 272
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.26 E-value=0.57 Score=53.43 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=27.0
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC---CEEEEcCCCCCchhhhH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL---DSVAITETGSGKTLAFL 176 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr---dvi~~a~TGSGKTlafl 176 (494)
.+|+++=-.+.+++.|++. +-.|+ -+|++++.|+|||....
T Consensus 13 qtFdEVIGQe~Vv~~L~~a---------------L~~gRL~HAyLFtGPpGvGKTTlAr 56 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHA---------------LDGGRLHHAYLFTGTRGVGKTTLSR 56 (830)
T ss_pred CcHHHHcCcHHHHHHHHHH---------------HhcCCCCeEEEEECCCCCCHHHHHH
Confidence 4566665567777666542 22332 35899999999997544
No 273
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.19 E-value=0.67 Score=44.27 Aligned_cols=116 Identities=17% Similarity=0.087 Sum_probs=71.9
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc------cchh-----------------------
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA------PTGE----------------------- 206 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~------PTre----------------------- 206 (494)
+....+++..++|.|||.+.+--.++.+-.. -+++|+- .+-|
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---------~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHG---------KKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET 90 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCC---------CeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC
Confidence 4567899999999999998877777766442 2222220 0000
Q ss_pred --HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC--hhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 207 --LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF--EPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 207 --La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf--~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
...........+..... .+.-..+++|||||+=..++.|+ .+.|..+++.-|...-+|+..-..|+++..+|
T Consensus 91 ~~~~e~~~~~~~~~~~a~~----~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~A 166 (191)
T PRK05986 91 QDRERDIAAAREGWEEAKR----MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAA 166 (191)
T ss_pred CCcHHHHHHHHHHHHHHHH----HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 00000111111111111 12235689999999999999886 45677777776667777777778888888777
Q ss_pred Hh
Q 042373 283 RK 284 (494)
Q Consensus 283 ~~ 284 (494)
..
T Consensus 167 Dl 168 (191)
T PRK05986 167 DL 168 (191)
T ss_pred ch
Confidence 54
No 274
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.17 E-value=0.15 Score=55.45 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHc-----C----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 146 AIQAPASALIIS-----G----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 146 piQ~~aip~il~-----g----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
|+|.-.+-.++. | +.+++.-+-|.|||.....-++..++-. +..++.+++.+++++-|..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~ 70 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIV 70 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHH
Confidence 678877777772 2 4678888999999976655555555432 22378899999999999887
No 275
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=93.15 E-value=0.38 Score=55.50 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=34.9
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ 327 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR 327 (494)
.-+..|..|-....|++..-.+.||.||--.++..+.|+--|
T Consensus 778 ~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdr 819 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDR 819 (1157)
T ss_pred ceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHH
Confidence 344567889999999999999999999999888888775555
No 276
>PHA02533 17 large terminase protein; Provisional
Probab=93.12 E-value=0.75 Score=50.81 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=46.8
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|.|.|...+-.+..+|-.++..+-..|||.+...-++......+ +..+++++|++.-|..+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-------~~~v~i~A~~~~QA~~v 120 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-------DKNVGILAHKASMAAEV 120 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-------CCEEEEEeCCHHHHHHH
Confidence 578899998887766676677788888999887755554444322 56899999999888776
No 277
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.10 E-value=0.26 Score=51.86 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=48.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
.++|+.+|+|+|||...-+ |..-. +....-+..+..=..+ +..++.+.. +.....+=.+|.
T Consensus 49 ~SmIl~GPPG~GKTTlA~l--iA~~~----------~~~f~~~sAv~~gvkd------lr~i~e~a~-~~~~~gr~tiLf 109 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL--IAGTT----------NAAFEALSAVTSGVKD------LREIIEEAR-KNRLLGRRTILF 109 (436)
T ss_pred ceeEEECCCCCCHHHHHHH--HHHhh----------CCceEEeccccccHHH------HHHHHHHHH-HHHhcCCceEEE
Confidence 4899999999999974432 22211 2223333433333322 233333211 111223446899
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
|||+||+-.. |-..++-++ .+..++++.||
T Consensus 110 lDEIHRfnK~----QQD~lLp~v-E~G~iilIGAT 139 (436)
T COG2256 110 LDEIHRFNKA----QQDALLPHV-ENGTIILIGAT 139 (436)
T ss_pred EehhhhcChh----hhhhhhhhh-cCCeEEEEecc
Confidence 9999998743 233333444 34566777776
No 278
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.48 Score=53.21 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=23.6
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..+.+++||||+|+|....|. .+.++++.-+....+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 346789999999998754432 2333344333445555544
No 279
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.04 E-value=0.3 Score=55.17 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafll 177 (494)
.+|+++--.+.+++.|+.. +..+ +.+|++|+.|+|||....+
T Consensus 13 ~tFddIIGQe~vv~~L~~a---------------i~~~rl~Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNA---------------LDEGRLHHAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred CCHHHHcCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCcHHHHHHH
Confidence 4566665566666655442 2223 4689999999999975543
No 280
>PF05729 NACHT: NACHT domain
Probab=93.01 E-value=0.95 Score=40.52 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=50.7
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcc-----------ee
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVK-----------IT 229 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~-----------~~ 229 (494)
++++|+.|+|||.. +--++..+........ .-..++....+....+... ..+.+++...... ..
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEEEPPPS---KFPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELL 77 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhcCcccc---cceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHH
Confidence 68899999999963 3445555544321100 0123444444444333210 1122221110000 00
Q ss_pred cccceEEEEEcccchhcccC-------ChhHHHHHHHh-hcCCCcEEEecCC
Q 042373 230 NLTRVTYLVLDEADRMFDMG-------FEPQITRIVQN-IRPDRQAVLFSPT 273 (494)
Q Consensus 230 ~l~~l~~lVlDEaD~ml~~g-------f~~~i~~Il~~-l~~~~Q~ilfSAT 273 (494)
....=-++|+|-+|.+.... +...+..++.. ++++..+++.|.+
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 01111259999999988632 22344445544 4456666666553
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.99 E-value=0.64 Score=49.11 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=60.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhH-HHhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GEL-VRQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reL-a~Qi--------------~TPgrl~dl 220 (494)
.++-+++++|||+|||....--... +..+. ...++|-+-| |.= +.|. .+|..+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~-l~~~g-------~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ-LLKQN-------RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHcC-------CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 3567889999999999755433322 22221 2344555544 321 2333 345555554
Q ss_pred HHhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCCh-HHHHHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPP-RVEILA 282 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~-~v~~l~ 282 (494)
+..- ...+..++|++|=+-+.... .....+..+...+.+.--++.+|||... .+..++
T Consensus 277 l~~l----~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 277 VQYM----TYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred HHHH----HhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 4421 12346789999998875422 1233444455555444445667776554 343433
No 282
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.99 E-value=0.27 Score=52.91 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.++.+++++|+|+|||+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3478999999999999743
No 283
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.98 E-value=0.32 Score=51.48 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+.++++||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 6799999999999963
No 284
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.97 E-value=0.35 Score=51.63 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=44.1
Q ss_pred HHHHcCCCEEEEcCCCCCchhhhHHHHHH-HHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecc
Q 042373 153 ALIISGLDSVAITETGSGKTLAFLLPMLR-HIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTlafllpil~-~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l 231 (494)
|.+-.+.|++..+|+|+|||-.|.--... .+.. | ...|+..|..-+..+. .-.+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~s---------G--------------~f~T~a~Lf~~L~~~~--lg~v 258 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPYVILIS---------G--------------GTITVAKLFYNISTRQ--IGLV 258 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHc---------C--------------CcCcHHHHHHHHHHHH--Hhhh
Confidence 66667899999999999999665532222 2322 2 1134445555454432 2246
Q ss_pred cceEEEEEcccchhc
Q 042373 232 TRVTYLVLDEADRMF 246 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml 246 (494)
.+.++||+||.-.+.
T Consensus 259 ~~~DlLI~DEvgylp 273 (449)
T TIGR02688 259 GRWDVVAFDEVATLK 273 (449)
T ss_pred ccCCEEEEEcCCCCc
Confidence 788999999988754
No 285
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.97 E-value=0.19 Score=51.88 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=48.2
Q ss_pred CCCCCCChhHHHHHHHHHcCC-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGL-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~gr-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..|...++-|...+-.+..++ |+++++.||||||. ++..+..--+ . .-+++.+=-|.||-.++
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~---~--~eRvItiEDtaELql~~ 216 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFID---S--DERVITIEDTAELQLAH 216 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCC---C--cccEEEEeehhhhccCC
Confidence 457889999999999988887 99999999999996 2333322111 1 23789999999998876
No 286
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.95 E-value=1 Score=50.78 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=26.1
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC---CEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL---DSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr---dvi~~a~TGSGKTlafll 177 (494)
.+|+++=-.+.+++.|.+ .+..|+ -+|++|+.|+|||.+..+
T Consensus 13 ~~f~divGQe~vv~~L~~---------------~l~~~rl~hAyLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 13 QTFAEVVGQEHVLTALAN---------------ALDLGRLHHAYLFSGTRGVGKTTIARL 57 (647)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 456665445666655542 233443 268999999999975543
No 287
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.87 E-value=0.62 Score=51.07 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=27.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafll 177 (494)
.+|.++--.+.++..|+. .+.+| +.+|++||.|+|||.+..+
T Consensus 18 ~~f~dliGq~~vv~~L~~---------------ai~~~ri~~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSY---------------TILNDRLAGGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 456665555566655543 23344 3689999999999975543
No 288
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.86 E-value=0.33 Score=49.10 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=14.0
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
..+++++|+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999963
No 289
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.69 E-value=0.34 Score=51.46 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHH-HHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcC---cceecccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRH-IWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNG---VKITNLTR 233 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~-l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~---~~~~~l~~ 233 (494)
..-++++|++|+|||- |+-++.+ +....+ .++++++..-.- ... ++..+..+. .+. .. +
T Consensus 113 ~nplfi~G~~GlGKTH--Ll~Aign~~~~~~~------~a~v~y~~se~f-~~~------~v~a~~~~~~~~Fk~-~y-~ 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTH--LLQAIGNEALANGP------NARVVYLTSEDF-TND------FVKALRDNEMEKFKE-KY-S 175 (408)
T ss_pred CCcEEEECCCCCCHHH--HHHHHHHHHHhhCC------CceEEeccHHHH-HHH------HHHHHHhhhHHHHHH-hh-c
Confidence 4678999999999996 3323322 222210 335555543221 111 111111110 111 24 8
Q ss_pred eEEEEEcccchhccc-CChhHHHHHHHhhcC-CCcEEEecCCCChHHHHH
Q 042373 234 VTYLVLDEADRMFDM-GFEPQITRIVQNIRP-DRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 234 l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~~v~~l 281 (494)
+++|++|.++.+-.. .....+..+++.+.. +.|+++.|-..|.++..+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 899999999988754 345667777777754 458888888888777543
No 290
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.19 Score=53.37 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=41.6
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-hhh-HHHHHHHhcCcceecccc
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-RRG-RMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-TPg-rl~dll~~~~~~~~~l~~ 233 (494)
|..-|+|+.+|||||||+. .-.|.++++ -|.+|-=|-|-.-|-=++ .-. .+..+|.....+ +.--.
T Consensus 224 LeKSNvLllGPtGsGKTll--aqTLAr~ld---------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n-VekAQ 291 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLL--AQTLARVLD---------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN-VEKAQ 291 (564)
T ss_pred eecccEEEECCCCCchhHH--HHHHHHHhC---------CCeEEecccchhhcccccccHHHHHHHHHHHccCC-HHHHh
Confidence 3446899999999999973 345666655 344443333321111010 001 122333332221 11123
Q ss_pred eEEEEEcccchhc
Q 042373 234 VTYLVLDEADRMF 246 (494)
Q Consensus 234 l~~lVlDEaD~ml 246 (494)
=..|+|||+|.|.
T Consensus 292 qGIVflDEvDKi~ 304 (564)
T KOG0745|consen 292 QGIVFLDEVDKIT 304 (564)
T ss_pred cCeEEEehhhhhc
Confidence 3579999999988
No 291
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.58 E-value=0.49 Score=50.44 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=46.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
..++++||+|+|||..... +...+ ++..+.+..+..-..++ ..+++..... ....+-.+|+
T Consensus 37 ~~ilL~GppGtGKTtLA~~-ia~~~-----------~~~~~~l~a~~~~~~~i---r~ii~~~~~~----~~~g~~~vL~ 97 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI-IAGAT-----------DAPFEALSAVTSGVKDL---REVIEEARQR----RSAGRRTILF 97 (413)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHh-----------CCCEEEEecccccHHHH---HHHHHHHHHh----hhcCCceEEE
Confidence 3789999999999964332 22211 23344444432222211 1122222110 0122457899
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
|||+|+|.. .+...++..+.. ..++++.+|
T Consensus 98 IDEi~~l~~----~~q~~LL~~le~-~~iilI~at 127 (413)
T PRK13342 98 IDEIHRFNK----AQQDALLPHVED-GTITLIGAT 127 (413)
T ss_pred EechhhhCH----HHHHHHHHHhhc-CcEEEEEeC
Confidence 999999763 233444555533 455566555
No 292
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.57 E-value=1.2 Score=44.94 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=48.3
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
.++++|++|+|||.+.. -+...+.... . ....+.+.++....... -...+..+..... ..-...++||+
T Consensus 40 ~~ll~G~~G~GKt~~~~-~l~~~l~~~~-----~-~~~~i~~~~~~~~~~~~-~~~~i~~~~~~~~---~~~~~~~vvii 108 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL-ALARELYGED-----W-RENFLELNASDERGIDV-IRNKIKEFARTAP---VGGAPFKIIFL 108 (319)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHcCCc-----c-ccceEEeccccccchHH-HHHHHHHHHhcCC---CCCCCceEEEE
Confidence 58999999999996443 2344433211 0 11233332222111100 0011222222110 11134679999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
||+|.+.... ...+..+++..+....+|+.+
T Consensus 109 De~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 109 DEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred eCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 9999886432 344555566555555555544
No 293
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.53 E-value=0.41 Score=48.38 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=47.2
Q ss_pred CCC-EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC-------------CCCeEEEEccchhHHHhhhhhhHHHHHHHh
Q 042373 158 GLD-SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD-------------DSPVGLVMAPTGELVRQQVRRGRMIDLLCK 223 (494)
Q Consensus 158 grd-vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~-------------~~p~aLIl~PTreLa~Qi~TPgrl~dll~~ 223 (494)
+.. +++++|.|+|||.+.. .+.+.+....+..... ..|..+.+.|.-.=-..+ ....+.++...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~-~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i-~~~~vr~~~~~ 100 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAAL-ALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDI-IVEQVRELAEF 100 (325)
T ss_pred CCceeeeeCCCCCCHHHHHH-HHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcc-hHHHHHHHHHH
Confidence 345 9999999999997644 3445554322111111 135667776654322110 11122233322
Q ss_pred cCcceecccceEEEEEcccchhcc
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
... .......+++++||||.|..
T Consensus 101 ~~~-~~~~~~~kviiidead~mt~ 123 (325)
T COG0470 101 LSE-SPLEGGYKVVIIDEADKLTE 123 (325)
T ss_pred hcc-CCCCCCceEEEeCcHHHHhH
Confidence 111 11236789999999999985
No 294
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.49 E-value=0.86 Score=52.79 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=18.5
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
..+.+|||||+|.|...+ ...+..+++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 346789999999998642 3334445543
No 295
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.44 E-value=0.37 Score=51.89 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
-|-......+..+..++++++.+++|+|||...
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 345556667778888999999999999999654
No 296
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.44 E-value=1.7 Score=49.92 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=54.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhhhHHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TPgrl~dll~~~~~~~~~l~~l 234 (494)
.++|+++|+|+|||...- -+.+.+.... ....-.+...+. +....|..-. ....++..++..-.. ..=
T Consensus 204 ~n~lL~G~pG~GKT~l~~-~la~~~~~~~-~p~~l~~~~~~~-~~~~~l~a~~~~~g~~e~~l~~i~~~~~~-----~~~ 275 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE-GLALRIAEGK-VPENLKNAKIYS-LDMGSLLAGTKYRGDFEERLKAVVSEIEK-----EPN 275 (731)
T ss_pred CceEEECCCCCCHHHHHH-HHHHHHHhCC-CchhhcCCeEEE-ecHHHHhhhccccchHHHHHHHHHHHHhc-----cCC
Confidence 599999999999997533 3333333221 000011233333 3333333211 122355555543110 112
Q ss_pred EEEEEcccchhcccCC----hhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 235 TYLVLDEADRMFDMGF----EPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf----~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
.+|++||+|.++..|- ...+..++...-....+.++.||-+.+.
T Consensus 276 ~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 276 AILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEY 323 (731)
T ss_pred eEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHH
Confidence 4799999999986432 1123333332222345666667765443
No 297
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.42 E-value=1 Score=51.19 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=76.7
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHcCC--CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 133 LETFSKLNHENPVAIQAPASALIISGL--DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~il~gr--dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
-..+..+..+.+..-|.+.+..++.++ -+++.|.-|-|||.+..+.+........ .-.++|.+||.+-+..
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-------~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-------SVRIIVTAPTPANVQT 276 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-------CceEEEeCCCHHHHHH
Confidence 344566656666677777777777664 5788899999999998887733332210 3478999999998876
Q ss_pred hh-hhhHHHHHHHh------cC---ccee--ccc------------ceEEEEEcccchhcccCChhHHHHHHHhhcCCCc
Q 042373 211 QV-RRGRMIDLLCK------NG---VKIT--NLT------------RVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266 (494)
Q Consensus 211 i~-TPgrl~dll~~------~~---~~~~--~l~------------~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q 266 (494)
+. --++-++.+.. .. .... +.. .-++||+|||=.|- .+.+.+++... +
T Consensus 277 Lf~fa~~~l~~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~~~~DllvVDEAAaIp----lplL~~l~~~~----~ 348 (758)
T COG1444 277 LFEFAGKGLEFLGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQEEADLLVVDEAAAIP----LPLLHKLLRRF----P 348 (758)
T ss_pred HHHHHHHhHHHhCCccccccccccceeeecCCceeEEeeCcchhcccCCEEEEehhhcCC----hHHHHHHHhhc----C
Confidence 61 11111222210 00 0000 000 16789999996554 45566555543 4
Q ss_pred EEEecCCCC
Q 042373 267 AVLFSPTFP 275 (494)
Q Consensus 267 ~ilfSAT~~ 275 (494)
.++||.|+.
T Consensus 349 rv~~sTTIh 357 (758)
T COG1444 349 RVLFSTTIH 357 (758)
T ss_pred ceEEEeeec
Confidence 677777764
No 298
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.72 Score=48.50 Aligned_cols=25 Identities=20% Similarity=0.326 Sum_probs=17.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|+++.|+||+|||..--. ++..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHH
Confidence 3799999999999975433 334443
No 299
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.40 E-value=0.85 Score=45.17 Aligned_cols=37 Identities=22% Similarity=0.107 Sum_probs=24.4
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
.=+++.|+||.|||. |++-+..++.... +..+++++.
T Consensus 20 ~L~vi~a~pg~GKT~-~~l~ia~~~a~~~-------~~~vly~Sl 56 (259)
T PF03796_consen 20 ELTVIAARPGVGKTA-FALQIALNAALNG-------GYPVLYFSL 56 (259)
T ss_dssp -EEEEEESTTSSHHH-HHHHHHHHHHHTT-------SSEEEEEES
T ss_pred cEEEEEecccCCchH-HHHHHHHHHHHhc-------CCeEEEEcC
Confidence 345677999999995 5555665554431 456788874
No 300
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.36 E-value=0.2 Score=47.59 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=25.1
Q ss_pred ceEEEEEcccchhcccCCh-----hHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 233 RVTYLVLDEADRMFDMGFE-----PQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~-----~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
.=.++||||||..+..... +.+...+...+.....++|...-+..+....+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir 134 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIR 134 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHH
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHH
Confidence 4578999999998865433 12224444445444455555544454544443
No 301
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.23 E-value=0.61 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=16.3
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHH
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l 183 (494)
-++++||.|+|||..... +...+
T Consensus 40 ~~L~~Gp~G~GKTtla~~-la~~l 62 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL-LAKSL 62 (363)
T ss_pred EEEEecCCCCCHHHHHHH-HHHHh
Confidence 368999999999975443 33444
No 302
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.18 E-value=1.2 Score=49.92 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+|+++=-++.+++.|.. .+.+| +.+|+++|.|+|||....+ +...++
T Consensus 21 ~~f~dliGq~~~v~~L~~---------------~~~~gri~ha~L~~Gp~GvGKTt~Ar~-lAk~L~ 71 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTN---------------AFETGRIAQAFMLTGVRGVGKTTTARI-LARALN 71 (598)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHH-HHHhhC
Confidence 467776556666666654 22334 3689999999999975544 334443
No 303
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=92.12 E-value=0.21 Score=54.64 Aligned_cols=49 Identities=27% Similarity=0.462 Sum_probs=28.9
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHc---CCCCCCCCCCCeEEEEccch
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWE---QPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~---~~~~~~~~~~p~aLIl~PTr 205 (494)
+-+|+++++++|+|+|||-.+ -++.-+.. ..-..+.+.+|.-|+.+|-|
T Consensus 458 V~~g~~LLItG~sG~GKtSLl--RvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLL--RVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ecCCCeEEEECCCCCchhHHH--HHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 457999999999999999632 33333221 11112233355656666654
No 304
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.10 E-value=0.55 Score=54.17 Aligned_cols=79 Identities=18% Similarity=0.064 Sum_probs=53.5
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
+..-....+.+.+... -+..+..-|++|+-.++..+|. ++.+=+|||||..... +++.+... |.++
T Consensus 650 f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~~--------gkkV 716 (1100)
T KOG1805|consen 650 FVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVAL--------GKKV 716 (1100)
T ss_pred hhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHHc--------CCeE
Confidence 3333445566666664 2446788999999999988765 6779999999975433 33333322 6678
Q ss_pred EEEccchhHHHhh
Q 042373 199 LVMAPTGELVRQQ 211 (494)
Q Consensus 199 LIl~PTreLa~Qi 211 (494)
|+.+=|..-+..+
T Consensus 717 LLtsyThsAVDNI 729 (1100)
T KOG1805|consen 717 LLTSYTHSAVDNI 729 (1100)
T ss_pred EEEehhhHHHHHH
Confidence 8888887666555
No 305
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.09 E-value=0.39 Score=50.60 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=32.8
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
..+.++.++|+++.+++.+. ..+..+++++|||||||. ++-.++.++..
T Consensus 127 ~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT-~l~al~~~i~~ 175 (372)
T TIGR02525 127 SDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKST-LAASIYQHCGE 175 (372)
T ss_pred CcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 33446777787776654332 124468999999999995 45567777754
No 306
>PRK09087 hypothetical protein; Validated
Probab=92.09 E-value=0.49 Score=46.26 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=24.0
Q ss_pred EEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecCCCCh
Q 042373 235 TYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSPTFPP 276 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~ 276 (494)
.+|++|++|.+- .....+..+++.+.. ++++|+.|.+-|+
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 479999999763 234556666666654 4454444444443
No 307
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.93 E-value=1.2 Score=52.11 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=54.9
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhhhHHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TPgrl~dll~~~~~~~~~l~~l 234 (494)
.++|+++++|+|||...- -+...+.... ....-.+...+.+... .|.... ....++..++..-. .-..-
T Consensus 200 ~n~lL~G~pGvGKT~l~~-~la~~i~~~~-vp~~l~~~~~~~l~l~-~l~ag~~~~g~~e~~lk~~~~~~~----~~~~~ 272 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE-GLAQRIINGE-VPEGLKGRRVLALDMG-ALVAGAKYRGEFEERLKGVLNDLA----KQEGN 272 (857)
T ss_pred CceEEECCCCCCHHHHHH-HHHHHhhcCC-CchhhCCCEEEEEehh-hhhhccchhhhhHHHHHHHHHHHH----HcCCC
Confidence 499999999999996442 2333332211 0000013333333222 332211 11234555544210 00123
Q ss_pred EEEEEcccchhcccCC---hhHHHHHHHhhcCCCcEEEecCCCChHHHHH
Q 042373 235 TYLVLDEADRMFDMGF---EPQITRIVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf---~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
.+|++||+|.|...|- ......++...-..-.+.+..||-+++...+
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~ 322 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 322 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHH
Confidence 5899999999985431 1123333332222334555556666665443
No 308
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.92 E-value=0.32 Score=46.40 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=16.7
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHH
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~ 184 (494)
+++++|||||||... ..++..+.
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhh
Confidence 678899999999753 44555553
No 309
>PRK13764 ATPase; Provisional
Probab=91.89 E-value=0.31 Score=54.34 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=21.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+++++++++||||||. ++-.++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 46789999999999995 4556666664
No 310
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.88 E-value=0.77 Score=53.30 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=25.2
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
.+.+++||||||+|-... ...+.++++.-+....+|+. .|-+..+
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCchhc
Confidence 467899999999986332 23333444443334444443 4544443
No 311
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.80 E-value=0.75 Score=52.64 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=61.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh--HHHhh--------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE--LVRQQ--------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre--La~Qi--------------~TPgrl~dll 221 (494)
|+=+.+++|||+|||.+...-.-....... . ...+||-+-|.- -..|. .+|..+.+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-----~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al 258 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG-----A-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL 258 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC-----C-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Confidence 455788999999999866543332222210 0 123444444422 23443 3455555545
Q ss_pred HhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCChH-HHHHH
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPPR-VEILA 282 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~-v~~l~ 282 (494)
.. +.+.++|+||=+-+.... ....++..+.....+..-++++|||.... +..++
T Consensus 259 ~~-------~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 259 AA-------LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred HH-------hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 42 456689999999876522 22334444444445566678889987543 33344
No 312
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=91.70 E-value=1.6 Score=45.88 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=68.7
Q ss_pred ChhHHHHHHHHHcCCCE------EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc-----chhHHHhh--
Q 042373 145 VAIQAPASALIISGLDS------VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP-----TGELVRQQ-- 211 (494)
Q Consensus 145 tpiQ~~aip~il~grdv------i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P-----TreLa~Qi-- 211 (494)
...|...+..++..++. ++.|.+|||||. +++.++... +...+.+.+ .+-|-.++
T Consensus 11 Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~-----~~r~~l~~~-------n~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 11 RESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTY-----LVRQLLRKL-------NLENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred hHHHHHHHHHHhCCCCcccceeEEEeccCCCchhH-----HHHHHHhhc-------CCcceeeehHHhccHHHHHHHHHH
Confidence 45688888888877654 788999999995 333333322 112233322 23333333
Q ss_pred -------------hhhhHHHHHH---HhcCcceecccceEEEEEcccchhcccC--ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 212 -------------VRRGRMIDLL---CKNGVKITNLTRVTYLVLDEADRMFDMG--FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 -------------~TPgrl~dll---~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.+-.-+.+++ ..- ....+....-++|+|-||.+-|++ ..+.+-++-.-++...-.+.||++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~-~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQW-PAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhh-HHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 1111222222 210 011122456799999999999987 344555555556656667788998
Q ss_pred CChHH
Q 042373 274 FPPRV 278 (494)
Q Consensus 274 ~~~~v 278 (494)
+.+..
T Consensus 158 ~~e~~ 162 (438)
T KOG2543|consen 158 SCEKQ 162 (438)
T ss_pred ccHHH
Confidence 87653
No 313
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.68 E-value=1 Score=52.35 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=55.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---hhhhHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
+++|++|++|+|||...-. +...+.... ......+...+.+-.+.-++-.- -.-.++..++..-. -..-.
T Consensus 201 ~n~lL~G~pGvGKTal~~~-la~~i~~~~-vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~-----~~~~~ 273 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG-LAQRIVNRD-VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQ-----ENNNI 273 (821)
T ss_pred CCeEEECCCCCCHHHHHHH-HHHHHHhCC-CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHH-----hcCCe
Confidence 5999999999999975433 233332211 00111133444443333332110 01225555554310 01234
Q ss_pred EEEEcccchhcccCCh---hHHHHHHHhhcCCCcEEEecCCCChHHHHH
Q 042373 236 YLVLDEADRMFDMGFE---PQITRIVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 236 ~lVlDEaD~ml~~gf~---~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
+|++||+|.++..|.. ..+..++...-....+.++.||-+.+....
T Consensus 274 ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 274 ILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred EEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHH
Confidence 8999999999875421 123344432212223334446656655443
No 314
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.62 E-value=0.47 Score=49.24 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=21.7
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
++..+++++++++||||||. ++-.++..+
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~i 184 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREI 184 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhC
Confidence 44567899999999999995 444555554
No 315
>CHL00176 ftsH cell division protein; Validated
Probab=91.58 E-value=0.76 Score=51.85 Aligned_cols=71 Identities=24% Similarity=0.231 Sum_probs=37.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
.+.+++.+|+|+|||+..- .+..-.. .| ++-+..-++.... .+..++.+++.... -..-.
T Consensus 216 p~gVLL~GPpGTGKT~LAr--alA~e~~---------~p--~i~is~s~f~~~~~g~~~~~vr~lF~~A~-----~~~P~ 277 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAK--AIAGEAE---------VP--FFSISGSEFVEMFVGVGAARVRDLFKKAK-----ENSPC 277 (638)
T ss_pred CceEEEECCCCCCHHHHHH--HHHHHhC---------CC--eeeccHHHHHHHhhhhhHHHHHHHHHHHh-----cCCCc
Confidence 3679999999999997332 2211110 22 2222222222211 12234555554321 12335
Q ss_pred EEEEcccchhc
Q 042373 236 YLVLDEADRMF 246 (494)
Q Consensus 236 ~lVlDEaD~ml 246 (494)
+|++||+|.+.
T Consensus 278 ILfIDEID~l~ 288 (638)
T CHL00176 278 IVFIDEIDAVG 288 (638)
T ss_pred EEEEecchhhh
Confidence 89999999986
No 316
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.51 E-value=0.74 Score=50.51 Aligned_cols=91 Identities=13% Similarity=0.052 Sum_probs=45.1
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCC-C-----------CCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcc
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVV-P-----------GDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVK 227 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~-~-----------~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~ 227 (494)
-+++++|.|+|||.+.. .+...+....+.. . ....+.++.|.+..... +..-..+.+.+...
T Consensus 38 a~Lf~GppGtGKTTlA~-~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~--vd~iR~l~~~~~~~--- 111 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR-LIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNS--VEDVRDLREKVLLA--- 111 (504)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCC--HHHHHHHHHHHhhc---
Confidence 35999999999997654 3444443211100 0 01134455555431110 00001122222221
Q ss_pred eecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 228 ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 228 ~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
-.+.+.++|||||+|.|.. ..+..+++.+
T Consensus 112 -p~~~~~kVVIIDEad~ls~----~a~naLLk~L 140 (504)
T PRK14963 112 -PLRGGRKVYILDEAHMMSK----SAFNALLKTL 140 (504)
T ss_pred -cccCCCeEEEEECccccCH----HHHHHHHHHH
Confidence 1245678999999998753 3344555555
No 317
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.40 E-value=1.2 Score=46.37 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=18.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+.++++||.|+|||.... -+..++..
T Consensus 40 ~~~L~~G~~G~GKt~~a~-~la~~l~~ 65 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR-ILARKINQ 65 (367)
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHhcC
Confidence 478899999999995433 34555543
No 318
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.31 E-value=1.1 Score=48.98 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=27.5
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFL 176 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafl 176 (494)
.+|+++=-++.+.+.|+. .+..| +.+|++||.|+|||.+..
T Consensus 10 ~~f~dliGQe~vv~~L~~---------------a~~~~ri~ha~Lf~Gp~G~GKTT~Ar 53 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRN---------------AFTLNKIPQSILLVGASGVGKTTCAR 53 (491)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCccHHHHHH
Confidence 566666556666666542 23334 468999999999997544
No 319
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.26 E-value=1 Score=52.60 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=55.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh----hHHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR----GRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP----grl~dll~~~~~~~~~l~~l 234 (494)
.+++++||+|+|||...- -+...+..... ...-.+...+.+- ...|....... .++..++..- .....-
T Consensus 195 ~n~lL~G~pGvGKT~l~~-~la~~i~~~~~-p~~l~~~~~~~l~-~~~l~a~~~~~g~~e~~l~~~l~~~----~~~~~~ 267 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE-GLAQRIVNGDV-PESLKNKRLLALD-MGALIAGAKYRGEFEERLKAVLNEV----TKSEGQ 267 (852)
T ss_pred CceEEEcCCCCCHHHHHH-HHHHHHhccCC-chhhcCCeEEEee-HHHHhhcchhhhhHHHHHHHHHHHH----HhcCCC
Confidence 599999999999996443 23333322110 0000133334332 22332111111 2444444421 011234
Q ss_pred EEEEEcccchhcccCCh---hHHHHHHHhhcCCCcEEEecCCCChHHHH
Q 042373 235 TYLVLDEADRMFDMGFE---PQITRIVQNIRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf~---~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~ 280 (494)
.+|++||+|.|...|.. .+...++...-....+.++.||-.++...
T Consensus 268 ~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 268 IILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK 316 (852)
T ss_pred eEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHH
Confidence 68999999999864422 12333333222233455555666665544
No 320
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.22 E-value=0.42 Score=49.17 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
+.+++++|+|+|||.... -+.+.+ . .....+-.|.. ..++.+..++.. +..-.+|+
T Consensus 52 ~~~ll~GppG~GKT~la~-~ia~~l-~---------~~~~~~~~~~~------~~~~~l~~~l~~-------l~~~~vl~ 107 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN-IIANEM-G---------VNIRITSGPAL------EKPGDLAAILTN-------LEEGDVLF 107 (328)
T ss_pred CcEEEECCCCccHHHHHH-HHHHHh-C---------CCeEEEecccc------cChHHHHHHHHh-------cccCCEEE
Confidence 579999999999996443 222222 1 11111112211 122334444432 34557999
Q ss_pred Ecccchhcc
Q 042373 239 LDEADRMFD 247 (494)
Q Consensus 239 lDEaD~ml~ 247 (494)
+||+|++..
T Consensus 108 IDEi~~l~~ 116 (328)
T PRK00080 108 IDEIHRLSP 116 (328)
T ss_pred EecHhhcch
Confidence 999999863
No 321
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.20 E-value=0.44 Score=49.96 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=20.5
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
.+.-+++++|||||||.. +-.++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 466799999999999964 3446666543
No 322
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.18 E-value=2.1 Score=44.26 Aligned_cols=119 Identities=14% Similarity=0.207 Sum_probs=64.4
Q ss_pred CChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-------------CCCCCeEEEEcc
Q 042373 144 PVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-------------GDDSPVGLVMAP 203 (494)
Q Consensus 144 ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~~-------------~~~~p~aLIl~P 203 (494)
..|+|...|..+. +|| -.+++||.|.||+.... -+.+.++-..+... ....|-..++.|
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~-~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR-ALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 3677877777665 443 67799999999996443 34445543221110 123677777877
Q ss_pred chh---HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 204 TGE---LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 204 Tre---La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
... -+.|+ ..+.+.+... -.-...+++|+|+||+|.... ...+-++++.-++...+++.|
T Consensus 82 ~~~~~I~id~i---R~l~~~~~~~----~~~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 82 IDNKDIGVDQV---REINEKVSQH----AQQGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred ccCCCCCHHHH---HHHHHHHhhc----cccCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 411 12221 1233333322 124567899999999998432 333344444433344444433
No 323
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.18 E-value=0.43 Score=52.39 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=24.3
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
.+.+++|+||+|+|....| ..+.++++..++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998875443 33444555544455555443
No 324
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.16 E-value=1.4 Score=47.13 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=56.2
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH--Hhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV--RQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa--~Qi--------------~TPgrl~dl 220 (494)
.|+-+.++++||+|||.....-.-..+..... ...++|.+.+.-.+ .|. .++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~------~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~a 263 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGA------DKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLM 263 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------CeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHH
Confidence 45567888999999998654322222222110 23467777763322 222 122222222
Q ss_pred HHhcCcceecccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChH-HHHHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPR-VEILA 282 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~-v~~l~ 282 (494)
+ ..++..+++++|.+-+.-. .....++..+.....+..-++++|||.... +...+
T Consensus 264 l-------~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 264 L-------HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred H-------HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 2 2356778899998743221 111223333322222344567788886544 33333
No 325
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=2 Score=43.10 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=62.9
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
|=.++++.|=+++-++.|++. .+.|.-.-...+..-. --+-+++.+|+|+|||++.-. + .++ .--
T Consensus 172 pdvty~dvggckeqieklrev-ve~pll~perfv~lgidppkgvllygppgtgktl~ara-----v-anr-------tda 237 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREV-VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARA-----V-ANR-------TDA 237 (435)
T ss_pred CCcccccccchHHHHHHHHHH-HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHH-----H-hcc-------cCc
Confidence 445677777777666666553 2222222222222111 127899999999999986432 2 221 223
Q ss_pred EEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 198 GLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 198 aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
+.|=+=--||++.. +.-.|+..-|-.- ..-..-+++.+||+|.+-..
T Consensus 238 cfirvigselvqkyvgegarmvrelf~m----artkkaciiffdeidaigga 285 (435)
T KOG0729|consen 238 CFIRVIGSELVQKYVGEGARMVRELFEM----ARTKKACIIFFDEIDAIGGA 285 (435)
T ss_pred eEEeehhHHHHHHHhhhhHHHHHHHHHH----hcccceEEEEeeccccccCc
Confidence 55556667888765 3444554433321 12345678999999987643
No 326
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.12 E-value=2 Score=44.60 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=58.3
Q ss_pred CChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-------------CCCCCeEEEEcc
Q 042373 144 PVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-------------GDDSPVGLVMAP 203 (494)
Q Consensus 144 ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~~-------------~~~~p~aLIl~P 203 (494)
..|+|...|..+. +|| -.++.||.|+||+... ..+.+.++-..+... ....|-..++.|
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 5688888887765 443 6789999999999543 334445543221111 123677888887
Q ss_pred chh----HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 204 TGE----LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 204 Tre----La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
... -+.|+ ..+.+.+... -.....+++|+|+||+|...
T Consensus 82 ~~~~~~I~idqi---R~l~~~~~~~----~~~g~~kV~iI~~ae~m~~~ 123 (334)
T PRK07993 82 EKGKSSLGVDAV---REVTEKLYEH----ARLGGAKVVWLPDAALLTDA 123 (334)
T ss_pred ccccccCCHHHH---HHHHHHHhhc----cccCCceEEEEcchHhhCHH
Confidence 532 12222 1233333322 23467899999999999843
No 327
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.10 E-value=0.63 Score=53.22 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=23.0
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
+-.+|||||+|+|... +...++..+. ..+++++++|-+
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTe 146 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTE 146 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCC
Confidence 4568999999987632 2233344332 356667666643
No 328
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=91.09 E-value=1.5 Score=47.64 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=33.0
Q ss_pred CCCCCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHHcCC
Q 042373 140 NHENPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIWEQP 187 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~~~~ 187 (494)
-|..-.|-|-+-.--+- .+-+.++-.|+|+|||.+.+--++..-++.+
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p 64 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP 64 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC
Confidence 35566677765544332 4568899999999999887766666655543
No 329
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.08 E-value=0.54 Score=52.86 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=24.2
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
.+.+++||||+|+|....+ ..+.++++..+....+|+ .+|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL-aTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF-ATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE-EECC
Confidence 4568999999998865433 344445554444444444 4443
No 330
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=91.08 E-value=3.1 Score=49.41 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=40.6
Q ss_pred Cccce-eeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc
Q 042373 287 VCNLS-IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE 341 (494)
Q Consensus 287 ~~~IL-VaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~ 341 (494)
.+++| ++|.|.+-|+++.+.+.||.++--.++..=+|-+-||.|-| .+|.|++..
T Consensus 1394 tIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1394 TIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred ceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 45554 57789999999999999999988777666666555543333 478888876
No 331
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.07 E-value=0.82 Score=49.74 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.0
Q ss_pred CEEEEcCCCCCchhhhH
Q 042373 160 DSVAITETGSGKTLAFL 176 (494)
Q Consensus 160 dvi~~a~TGSGKTlafl 176 (494)
.+|++||+|+|||....
T Consensus 38 ~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 38 AYIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999996544
No 332
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=90.94 E-value=0.27 Score=46.05 Aligned_cols=78 Identities=18% Similarity=0.115 Sum_probs=40.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
++++++|||+|||.. .-++..++.. .....++....-++.........+..++..... ......-.+|+|
T Consensus 5 ~~ll~GpsGvGKT~l--a~~la~~l~~-------~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~-~v~~~~~gVVll 74 (171)
T PF07724_consen 5 NFLLAGPSGVGKTEL--AKALAELLFV-------GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPG-YVGAEEGGVVLL 74 (171)
T ss_dssp EEEEESSTTSSHHHH--HHHHHHHHT--------SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTC-HHHHHHHTEEEE
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhcc-------CCccchHHHhhhcccccchHHhhhhhhhhcccc-eeeccchhhhhh
Confidence 578999999999952 2333333331 034566666666665521111111111211111 111122238999
Q ss_pred cccchhcc
Q 042373 240 DEADRMFD 247 (494)
Q Consensus 240 DEaD~ml~ 247 (494)
||+|....
T Consensus 75 DEidKa~~ 82 (171)
T PF07724_consen 75 DEIDKAHP 82 (171)
T ss_dssp ETGGGCSH
T ss_pred HHHhhccc
Confidence 99998775
No 333
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.85 E-value=1.3 Score=46.34 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=24.3
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
...+++||||||.|.... ...+.++++.-+....+++++
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999986433 334555555544444555554
No 334
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.84 E-value=0.21 Score=44.21 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.2
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
+|++.+++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 589999999999963
No 335
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=2.4 Score=46.36 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=73.8
Q ss_pred cCCCCHHHHHHHHhCCCCCCChhHHHHHHHH----Hc-------C-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 125 QTGLTTKILETFSKLNHENPVAIQAPASALI----IS-------G-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 125 ~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~i----l~-------g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
.+|.+++-++.....|.-.-.|-=.+.+..- -+ + ..+++.+|.|||||....--.+ .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~---~-------- 561 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL---S-------- 561 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh---h--------
Confidence 3588888888887776554444333333221 11 1 4789999999999963322111 1
Q ss_pred CCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC-----ChhHHHH----HHHhhcC
Q 042373 193 DDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG-----FEPQITR----IVQNIRP 263 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g-----f~~~i~~----Il~~l~~ 263 (494)
..-|.+=|++|..-....- ..+. .++.+. ..-.+-+.+.++|+|+..+|+||. |...+-. +++..|+
T Consensus 562 S~FPFvKiiSpe~miG~sE--saKc-~~i~k~-F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~pp 637 (744)
T KOG0741|consen 562 SDFPFVKIISPEDMIGLSE--SAKC-AHIKKI-FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPP 637 (744)
T ss_pred cCCCeEEEeChHHccCccH--HHHH-HHHHHH-HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCC
Confidence 1268888888853322110 0011 111110 011234678899999999999985 4333332 2333344
Q ss_pred -CCcEEEecCCC
Q 042373 264 -DRQAVLFSPTF 274 (494)
Q Consensus 264 -~~Q~ilfSAT~ 274 (494)
++..+.|..|-
T Consensus 638 kg~kLli~~TTS 649 (744)
T KOG0741|consen 638 KGRKLLIFGTTS 649 (744)
T ss_pred CCceEEEEeccc
Confidence 45566665553
No 336
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.77 E-value=0.32 Score=50.75 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 153 ALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
-++..+++++++++||||||. ++-.++..+-. .-+.+.+=.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~---------~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTT-MSKTLISAIPP---------QERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHH-HHHHHHcccCC---------CCCEEEECCCcccc
Confidence 345577899999999999995 33334433311 23456666677764
No 337
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.75 E-value=1.5 Score=45.35 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=68.0
Q ss_pred ChhHHHHHHHHHc--CC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCC---C-----------CCCCCeEEEEccch
Q 042373 145 VAIQAPASALIIS--GL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVV---P-----------GDDSPVGLVMAPTG 205 (494)
Q Consensus 145 tpiQ~~aip~il~--gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~---~-----------~~~~p~aLIl~PTr 205 (494)
.|+|...|..+.. || -++++||.|+|||..... +...++-..+.. + ....|-..++.|+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~ 81 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLS 81 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccc
Confidence 6888888888873 33 588999999999964433 344444222110 0 12357788888853
Q ss_pred h-----------HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 206 E-----------LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 206 e-----------La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
. -+.|+ ..+.+.+... -.....+++|+|++|.|-.. ....+.++++..+.... +++++.
T Consensus 82 ~~~~~g~~~~~I~id~i---R~l~~~~~~~----p~~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~-~Ilvth 151 (325)
T PRK08699 82 DEPENGRKLLQIKIDAV---REIIDNVYLT----SVRGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVV-FLLVSH 151 (325)
T ss_pred ccccccccCCCcCHHHH---HHHHHHHhhC----cccCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCE-EEEEeC
Confidence 1 12222 1233333321 12456788999999988643 34555556665544433 444443
No 338
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.61 E-value=1.3 Score=44.51 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=41.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhH-HHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGR-MIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgr-l~dll~~~~~~~~~l~~l~~ 236 (494)
|||++.+|+|+|||+ +...+.+. ...-++++..-+|.-.. +.-.| +..+..+.. -..-+.
T Consensus 152 knVLFyGppGTGKTm------~Akalane-------~kvp~l~vkat~liGehVGdgar~Ihely~rA~-----~~aPci 213 (368)
T COG1223 152 KNVLFYGPPGTGKTM------MAKALANE-------AKVPLLLVKATELIGEHVGDGARRIHELYERAR-----KAAPCI 213 (368)
T ss_pred ceeEEECCCCccHHH------HHHHHhcc-------cCCceEEechHHHHHHHhhhHHHHHHHHHHHHH-----hcCCeE
Confidence 899999999999996 22222221 22346666666665443 33333 334443321 123357
Q ss_pred EEEcccchhc
Q 042373 237 LVLDEADRMF 246 (494)
Q Consensus 237 lVlDEaD~ml 246 (494)
+.+||.|.+.
T Consensus 214 vFiDE~DAia 223 (368)
T COG1223 214 VFIDELDAIA 223 (368)
T ss_pred EEehhhhhhh
Confidence 8899999875
No 339
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=0.6 Score=50.68 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.7
Q ss_pred CEEEEcCCCCCchhhhHH
Q 042373 160 DSVAITETGSGKTLAFLL 177 (494)
Q Consensus 160 dvi~~a~TGSGKTlafll 177 (494)
-+|++||.|+|||.+..+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999975543
No 340
>PHA02244 ATPase-like protein
Probab=90.53 E-value=1.3 Score=46.52 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHcCCCEEEEcCCCCCchh
Q 042373 153 ALIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTl 173 (494)
-.+-.+.++++.+|||+|||.
T Consensus 114 r~l~~~~PVLL~GppGtGKTt 134 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNH 134 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHH
Confidence 345578999999999999995
No 341
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.52 E-value=0.52 Score=47.24 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHc-C-CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 146 AIQAPASALIIS-G-LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 146 piQ~~aip~il~-g-rdvi~~a~TGSGKTlafllpil~~l 183 (494)
+-|.+.|-.++. . .-+++.++||||||.. +-.++..+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 334444444432 3 4588999999999963 34455555
No 342
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.49 E-value=1.7 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=17.0
Q ss_pred HHHHHc-C--CCEEEEcCCCCCchh
Q 042373 152 SALIIS-G--LDSVAITETGSGKTL 173 (494)
Q Consensus 152 ip~il~-g--rdvi~~a~TGSGKTl 173 (494)
++.+.. + +++++.++||||||.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 445543 3 688999999999996
No 343
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.46 E-value=2.2 Score=47.92 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=26.1
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhc--CCCcEEEecCCCChHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIR--PDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~--~~~Q~ilfSAT~~~~v~ 279 (494)
....++|||||+|.|... ....+++.+. +..-+++|.+|-+..+.
T Consensus 117 ~g~~kVIIIDEad~Lt~~----a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTRE----AFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCceEEEEEChHhCCHH----HHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 345689999999998632 3444555542 23334455555544443
No 344
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=1.2 Score=47.12 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
||+++.+|+|+|||+..
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 79999999999999754
No 345
>CHL00195 ycf46 Ycf46; Provisional
Probab=90.35 E-value=1.2 Score=48.64 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=38.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-hhhHHHHHHHhcCcceecccceEE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-RRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.+.+++.||+|||||+.. -.+..-. +...+.+.+.+-...-++ +..++..++... .-..=.+
T Consensus 259 pkGILL~GPpGTGKTllA--kaiA~e~----------~~~~~~l~~~~l~~~~vGese~~l~~~f~~A-----~~~~P~I 321 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA--KAIANDW----------QLPLLRLDVGKLFGGIVGESESRMRQMIRIA-----EALSPCI 321 (489)
T ss_pred CceEEEECCCCCcHHHHH--HHHHHHh----------CCCEEEEEhHHhcccccChHHHHHHHHHHHH-----HhcCCcE
Confidence 367999999999999643 2222211 222333333321111122 333444444321 1112357
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|++||+|.++.
T Consensus 322 L~IDEID~~~~ 332 (489)
T CHL00195 322 LWIDEIDKAFS 332 (489)
T ss_pred EEehhhhhhhc
Confidence 88999998874
No 346
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.35 E-value=2.1 Score=45.84 Aligned_cols=52 Identities=8% Similarity=0.083 Sum_probs=28.4
Q ss_pred cceEEEEEcccchhc-ccCChhHHHHHHHhhc---CCCcEEEecCCCCh-HHHHHHH
Q 042373 232 TRVTYLVLDEADRMF-DMGFEPQITRIVQNIR---PDRQAVLFSPTFPP-RVEILAR 283 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~---~~~Q~ilfSAT~~~-~v~~l~~ 283 (494)
...++||+|=+-++. +......+..++..+. +..-++.+|||... .+...++
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 466889999876653 2222233444444432 22346778888876 4444443
No 347
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.34 E-value=1.4 Score=49.46 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafll 177 (494)
.+|+++--++.+++.|++ .+.++ +-+|++|+.|+|||....+
T Consensus 13 ~~f~dviGQe~vv~~L~~---------------~l~~~rl~ha~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTN---------------ALTQQRLHHAYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 456665446666666654 22233 2359999999999976554
No 348
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=0.33 Score=52.73 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=32.8
Q ss_pred CCCCCCCcccCC---CCHHHHHHHHhCCCCC---CChhHHHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 116 APKPIKTWRQTG---LTTKILETFSKLNHEN---PVAIQAPASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 116 ~P~pi~~f~~l~---L~~~ll~~l~~~g~~~---ptpiQ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
+-.|=-+|+++| |..+.-..+++.--.. |.-+.+--|+ .=|-+++.+|+|+||||..
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHHH
Confidence 335566788885 7777666555421111 1112111111 1267899999999999843
No 349
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.23 E-value=2.1 Score=41.57 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCCchhhhHH
Q 042373 158 GLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafll 177 (494)
|.-+++.+++|+|||.....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~ 44 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQ 44 (234)
T ss_pred CcEEEEECCCCCChHHHHHH
Confidence 46788889999999964433
No 350
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.10 E-value=1 Score=45.61 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCCCchhhhH
Q 042373 157 SGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafl 176 (494)
.++-+++++|||+|||....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678899999999997544
No 351
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=90.05 E-value=0.51 Score=53.57 Aligned_cols=62 Identities=16% Similarity=0.032 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.+++-|.+++.. ....+++.|..|||||.+..--+...+.... -.....|+|+-|+..|..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em 63 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREM 63 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHH
Confidence 478999998865 3567899999999999876555554443211 1123699999999998876
No 352
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.98 E-value=0.76 Score=44.40 Aligned_cols=27 Identities=26% Similarity=0.177 Sum_probs=19.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
|.-+++.+++|||||.-.+--+...+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~ 45 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLK 45 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhh
Confidence 467899999999999754444445544
No 353
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.95 E-value=1.5 Score=46.53 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=53.5
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC------------CCCCCeEEEEccchh--HHHhhhhhhHHHHHHHh
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP------------GDDSPVGLVMAPTGE--LVRQQVRRGRMIDLLCK 223 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~------------~~~~p~aLIl~PTre--La~Qi~TPgrl~dll~~ 223 (494)
.+-+|+++|.|+|||..... +...++....... ..+.|-..++.|... -..|+ ..+.+.+..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~-lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~i---R~l~~~~~~ 111 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARA-FAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEV---RELVTIAAR 111 (394)
T ss_pred CeEEEEECCCCCcHHHHHHH-HHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHH---HHHHHHHHh
Confidence 35689999999999964433 3333332211000 112556667766421 11121 122333322
Q ss_pred cCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
.. ...+.+++|+||+|+|.... ...+.++++.-++.. ++++.+|-+.
T Consensus 112 ~p----~~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~ 158 (394)
T PRK07940 112 RP----STGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPE 158 (394)
T ss_pred Cc----ccCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChH
Confidence 11 23567899999999997432 233333444333333 3444444333
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.90 E-value=1.9 Score=45.02 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHc--C---CCEEEEcCCCCCchhhhHHHHHHHHHcCCCC---CC-----------CCCCCeEEEEccch
Q 042373 145 VAIQAPASALIIS--G---LDSVAITETGSGKTLAFLLPMLRHIWEQPPV---VP-----------GDDSPVGLVMAPTG 205 (494)
Q Consensus 145 tpiQ~~aip~il~--g---rdvi~~a~TGSGKTlafllpil~~l~~~~~~---~~-----------~~~~p~aLIl~PTr 205 (494)
.|+|...|..+.+ | +-++++||.|.||+... .-+.+.++-..+. .+ ..+.|-..++.|..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~ 81 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEA 81 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc
Confidence 6888888887764 3 36789999999999644 3344445433211 00 12357777887763
Q ss_pred h------------------HHH------hhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 206 E------------------LVR------QQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 206 e------------------La~------Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
- ... ....-..+.++...-.. .......+++|||+||+|.... ...+-+.++.-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~-~~~~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEP 159 (342)
T PRK06964 82 LAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGV-GTHRGGARVVVLYPAEALNVAA-ANALLKTLEEP 159 (342)
T ss_pred ccccccccccccccchhhcccccccccccccCHHHHHHHHHHhcc-CCccCCceEEEEechhhcCHHH-HHHHHHHhcCC
Confidence 1 000 01111223333322111 1124567899999999997432 23333444433
Q ss_pred cCCCcEEEec
Q 042373 262 RPDRQAVLFS 271 (494)
Q Consensus 262 ~~~~Q~ilfS 271 (494)
++..-+|+.|
T Consensus 160 p~~t~fiL~t 169 (342)
T PRK06964 160 PPGTVFLLVS 169 (342)
T ss_pred CcCcEEEEEE
Confidence 3333444443
No 355
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=89.88 E-value=0.23 Score=55.16 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+|+|...+-.+-.- +.|+++.++-+|||... +-++-...++. ...+|++.||.++|...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~-~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~ 78 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELL-LNWIGYSIDQD-------PGPMLYVQPTDDAAKDF 78 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHH-HhhceEEEEeC-------CCCEEEEEEcHHHHHHH
Confidence 5678888877666644 68899999999999843 33444444432 23489999999999987
No 356
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.87 E-value=1.2 Score=49.64 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=17.4
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
+-+|++||.|+|||..... +...+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~-lAk~L~ 63 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI-FAKAIN 63 (605)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHhc
Confidence 4588999999999965443 334443
No 357
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=89.84 E-value=0.42 Score=55.66 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=39.1
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.|+++|...--.+..| -|+-..||-||||+..||++-..+. |.-+=|++-.--||.
T Consensus 138 ~~ydVQLiGgivLh~G--~IAEM~TGEGKTLvatlp~yLnAL~---------G~gVHvVTvNDYLA~ 193 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSG--KISEMATGEGKTLVSTLPTFLNALT---------GRGVHVVTVNDYLAQ 193 (1025)
T ss_pred cccchHHhhhHHhhcC--CccccCCCCCcchHhHHHHHHHHHc---------CCCcEEEeechHhhh
Confidence 4677776655455555 4788999999999999999877665 333555555555654
No 358
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=89.79 E-value=7.4 Score=45.12 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=49.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------hhhhHHHHHHHhcCcce
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------VRRGRMIDLLCKNGVKI 228 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------~TPgrl~dll~~~~~~~ 228 (494)
.|.-+++++|+|+|||...- .+...+.. ...-+-+...+....-. ..||++...+.....
T Consensus 348 ~g~~i~l~GppG~GKTtl~~--~ia~~l~~--------~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~-- 415 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQ--SIAKATGR--------KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV-- 415 (784)
T ss_pred CCceEEEECCCCCCHHHHHH--HHHHHhCC--------CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC--
Confidence 45678999999999996332 23332221 11112233333322111 468888887765321
Q ss_pred ecccceEEEEEcccchhcccCChhHHHHHHHhhc
Q 042373 229 TNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR 262 (494)
Q Consensus 229 ~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~ 262 (494)
.. .++++||+|++....-.+-...++..+.
T Consensus 416 --~~--~villDEidk~~~~~~g~~~~aLlevld 445 (784)
T PRK10787 416 --KN--PLFLLDEIDKMSSDMRGDPASALLEVLD 445 (784)
T ss_pred --CC--CEEEEEChhhcccccCCCHHHHHHHHhc
Confidence 12 3699999999875432333444555443
No 359
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=1.9 Score=45.04 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=60.4
Q ss_pred CCCCCcccCC-CCHHHHHHHH--hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTG-LTTKILETFS--KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~-L~~~ll~~l~--~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
+|=.+|++.| |..+|.+.-. .+-..+|--++.--|. --+-||+.+|+|+|||+.. ..+-++
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLA-----kAVA~~-------- 208 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLA-----KAVANQ-------- 208 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHH-----HHHHhc--------
Confidence 3556677775 6666554321 1222332222221111 1378999999999999732 222221
Q ss_pred CCeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 195 SPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
.--..|=+.--||++.. +.-.||+.-+-. ...-+.-+.+.+||.|.+-..
T Consensus 209 T~AtFIrvvgSElVqKYiGEGaRlVRelF~----lArekaPsIIFiDEIDAIg~k 259 (406)
T COG1222 209 TDATFIRVVGSELVQKYIGEGARLVRELFE----LAREKAPSIIFIDEIDAIGAK 259 (406)
T ss_pred cCceEEEeccHHHHHHHhccchHHHHHHHH----HHhhcCCeEEEEechhhhhcc
Confidence 22356667778888765 333455433321 111234468999999988753
No 360
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.54 E-value=2.3 Score=43.53 Aligned_cols=20 Identities=40% Similarity=0.375 Sum_probs=17.2
Q ss_pred HHHcCCCEEEEcCCCCCchh
Q 042373 154 LIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTl 173 (494)
.+..|++++++++||||||.
T Consensus 140 ~v~~~~~ili~G~tGsGKTT 159 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTT 159 (308)
T ss_pred HhhCCCEEEEECCCCCCHHH
Confidence 34467899999999999996
No 361
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.33 E-value=1.9 Score=50.33 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=57.0
Q ss_pred HHHHHHHHH----cC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhhhHH
Q 042373 148 QAPASALII----SG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRRGRM 217 (494)
Q Consensus 148 Q~~aip~il----~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TPgrl 217 (494)
|..-|-.++ ++ .++|++++.|+|||... --+.+.+.... ....-.++..+.+-... |.... -...+|
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~-~~La~~i~~~~-v~~~l~~~~i~~l~l~~-l~ag~~~~ge~e~~l 268 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV-EGLALRIAAGD-VPPALRNVRLLSLDLGL-LQAGASVKGEFENRL 268 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH-HHHHHHHhhCC-CCccccCCeEEEeehhh-hhcccccchHHHHHH
Confidence 555454443 32 59999999999999643 22333332211 00001123333222222 21100 112345
Q ss_pred HHHHHhcCcceecccceEEEEEcccchhcccCC---hhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 218 IDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF---EPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 218 ~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf---~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
..++..-.. -..-.+|++||+|.|...|- ..+...++...-..-.+.+..||-+++.
T Consensus 269 k~ii~e~~~----~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 269 KSVIDEVKA----SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328 (852)
T ss_pred HHHHHHHHh----cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence 555543110 01234789999999986431 1122223332222334555566655444
No 362
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.26 E-value=3.9 Score=42.22 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=66.2
Q ss_pred CCChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC------------CCCCCeEEEEcc
Q 042373 143 NPVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP------------GDDSPVGLVMAP 203 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~~------------~~~~p~aLIl~P 203 (494)
.+.|+|...+..+. +|| -.+++||.|.||+... .-+.+.++-...... ....|-..++.|
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 45788888877765 444 6899999999998533 334444443221110 123677888888
Q ss_pred chh----HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 204 TGE----LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 204 Tre----La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..+ -+.|+ ..+.+.+... ......+++|+|+||+|.... ...+-++++.-+++.-+|+.|
T Consensus 82 ~~~~~~I~vdqi---R~l~~~~~~~----~~~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t 145 (319)
T PRK06090 82 EKEGKSITVEQI---RQCNRLAQES----SQLNGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCLFLLVT 145 (319)
T ss_pred CcCCCcCCHHHH---HHHHHHHhhC----cccCCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 531 12222 1233333322 134567899999999997432 233333344323333344433
No 363
>PHA00729 NTP-binding motif containing protein
Probab=89.18 E-value=2 Score=42.22 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=56.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcC-CCC----CCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccce
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQ-PPV----VPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~-~~~----~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l 234 (494)
++++.|++|+|||.... .+...+... ... .....+-. .++....+|...+ ...+. +..++
T Consensus 19 nIlItG~pGvGKT~LA~-aLa~~l~~~l~~l~~~~~~~d~~~~-~~fid~~~Ll~~L------~~a~~-------~~~~~ 83 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL-KVARDVFWKLNNLSTKDDAWQYVQN-SYFFELPDALEKI------QDAID-------NDYRI 83 (226)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHHhhcccccchhhHHhcCCc-EEEEEHHHHHHHH------HHHHh-------cCCCC
Confidence 79999999999995333 233333210 000 00011222 3334444555432 12221 12345
Q ss_pred EEEEEcccchhcccC-Ch----hHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcc
Q 042373 235 TYLVLDEADRMFDMG-FE----PQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCN 289 (494)
Q Consensus 235 ~~lVlDEaD~ml~~g-f~----~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ 289 (494)
.++|+|++-.-+... |. .....+...++...+++.|...-+..+....+..|-..
T Consensus 84 dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~~ 143 (226)
T PHA00729 84 PLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWYQ 143 (226)
T ss_pred CEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCcH
Confidence 789999953322111 11 12223444455556677777766667666665544433
No 364
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.17 E-value=1.8 Score=42.29 Aligned_cols=39 Identities=8% Similarity=-0.007 Sum_probs=24.7
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
-.|.-+++.+++|+|||...+- ++..+..+ +..+++++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~-~~~~~~~~--------g~~~~yi~~ 60 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQR-LAYGFLQN--------GYSVSYVST 60 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHH-HHHHHHhC--------CCcEEEEeC
Confidence 3477889999999999975332 23333221 445677763
No 365
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=89.17 E-value=1 Score=46.17 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=48.9
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------hhh-hHHHHHHHhcCcceec
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------VRR-GRMIDLLCKNGVKITN 230 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------~TP-grl~dll~~~~~~~~~ 230 (494)
++++.+|.|+|||-. +++.-..++ +| -|++.+..+. ..+ .+...+-.......+.
T Consensus 64 h~L~YgPPGtGktst-i~a~a~~ly----------~~-----~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fs 127 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTST-ILANARDFY----------SP-----HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYS 127 (360)
T ss_pred cccccCCCCCCCCCc-hhhhhhhhc----------CC-----CCchhHHHHhhccCccCCcchHHHHHHHHhhccceecc
Confidence 788888999999954 334443333 22 3455554444 111 1122222211110100
Q ss_pred -ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 231 -LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 231 -l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
-..++++|+||||.|... -...+++++.....+..+.+
T Consensus 128 t~~~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~i 166 (360)
T KOG0990|consen 128 THAAFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFAT 166 (360)
T ss_pred ccCceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEE
Confidence 126899999999998843 23455566666554444443
No 366
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=89.14 E-value=0.86 Score=47.09 Aligned_cols=45 Identities=16% Similarity=-0.020 Sum_probs=36.2
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+.--|+-|..=+..|...-=+++++|-|+|||..........+..
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~ 170 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA 170 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh
Confidence 556789999988888877778899999999998776666666644
No 367
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.14 E-value=1.7 Score=47.46 Aligned_cols=116 Identities=15% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
|-|++++|+|+|||+ |.+.... +.+.- .+-+.--|.=+=. .-..|+.+++..... +--+.
T Consensus 338 KGVLLvGPPGTGKTl------LARAvAG------EA~VP-FF~~sGSEFdEm~VGvGArRVRdLF~aAk~-----~APcI 399 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTL------LARAVAG------EAGVP-FFYASGSEFDEMFVGVGARRVRDLFAAAKA-----RAPCI 399 (752)
T ss_pred CceEEeCCCCCchhH------HHHHhhc------ccCCC-eEeccccchhhhhhcccHHHHHHHHHHHHh-----cCCeE
Confidence 689999999999996 2222221 11111 1111111110000 233477788775422 33467
Q ss_pred EEEcccchhcccCCh-------hHHHHHHHhh---cCCCcEEEecCCC-ChHHHHHHHhcCCcccee
Q 042373 237 LVLDEADRMFDMGFE-------PQITRIVQNI---RPDRQAVLFSPTF-PPRVEILARKTNVCNLSI 292 (494)
Q Consensus 237 lVlDEaD~ml~~gf~-------~~i~~Il~~l---~~~~Q~ilfSAT~-~~~v~~l~~~~g~~~ILV 292 (494)
+.+||.|.+-..-.. ..+..++-.+ ..+--+|++.||- |..+....-+.|.++.-|
T Consensus 400 IFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v 466 (752)
T KOG0734|consen 400 IFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHV 466 (752)
T ss_pred EEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeE
Confidence 889999987643211 1233333333 4455688889994 444444444455555444
No 368
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.14 E-value=2.2 Score=44.87 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=30.8
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
.....+|+|||+| +-|.+-.-.+.++++.+ ..+.-+|..|.+.|..+
T Consensus 125 ~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 125 AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 3456789999998 34444344455666554 45667788888877654
No 369
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.11 E-value=1.9 Score=40.32 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=17.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+.+++.+|.|+|||... .-+...+..
T Consensus 15 ~~~L~~G~~G~gkt~~a-~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLA-LALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 35889999999999543 334445543
No 370
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=89.09 E-value=5.4 Score=46.67 Aligned_cols=57 Identities=19% Similarity=0.076 Sum_probs=42.8
Q ss_pred CCccceeeccccccCCCCCC---c-----eEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccC
Q 042373 286 NVCNLSIANSVRARGLDEKE---L-----ELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEEN 342 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~---v-----~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~ 342 (494)
..-.|.|||+.|+||-||.- | =|||.-..|.|..---|-.|| -|..|.+..|++-+|
T Consensus 615 ~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 615 KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred CCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 34679999999999999841 2 268888889887777775555 455788888888654
No 371
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=89.02 E-value=0.73 Score=52.11 Aligned_cols=61 Identities=16% Similarity=0.019 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+++-|.+++-. ...++++.|..|||||.+-+--+...+.... ......|+|+.|+..|.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em 62 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREM 62 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHH
Confidence 68889998754 4568999999999999876655555443211 1134689999998888876
No 372
>PRK10436 hypothetical protein; Provisional
Probab=89.01 E-value=0.78 Score=49.76 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHH--cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 145 VAIQAPASALII--SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 145 tpiQ~~aip~il--~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+-|.+.+..++ .+--+++++|||||||... ..++.++.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 344444444443 3345889999999999743 45666653
No 373
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.88 E-value=2 Score=43.45 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=57.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh-HHHhh--------hhhh------H--HHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE-LVRQQ--------VRRG------R--MIDLL 221 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre-La~Qi--------~TPg------r--l~dll 221 (494)
-+++++||.|+||-. -++.++++++-..-..- + --.-=|.+|+.- |-.+. .||. | +.+++
T Consensus 35 PHll~yGPSGaGKKT-rimclL~elYG~gvekl-k-i~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQell 111 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKT-RIMCLLRELYGVGVEKL-K-IETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELL 111 (351)
T ss_pred CeEEEECCCCCCchh-hHHHHHHHHhCCCchhe-e-eeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHH
Confidence 468999999999863 46678888874210000 0 001122333322 11111 2331 1 12222
Q ss_pred H----hcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 222 C----KNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 222 ~----~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
. ........-+.+++||+-|||.|.... ...+++-++.....+++|+.....++
T Consensus 112 KevAQt~qie~~~qr~fKvvvi~ead~LT~dA-Q~aLRRTMEkYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 112 KEVAQTQQIETQGQRPFKVVVINEADELTRDA-QHALRRTMEKYSSNCRLILVCNSTSR 169 (351)
T ss_pred HHHHhhcchhhccccceEEEEEechHhhhHHH-HHHHHHHHHHHhcCceEEEEecCccc
Confidence 2 111112223578999999999987432 33444555555555566665554443
No 374
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.86 E-value=0.2 Score=52.66 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=32.5
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+++++|+||||||.++++|-+... ...+||+-|--|+....
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----------~~s~vv~D~Kge~~~~t 41 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----------PGSVVVLDPKGENFELT 41 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----------CCCEEEEccchhHHHHH
Confidence 478999999999999999987532 23578888888888653
No 375
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.85 E-value=0.29 Score=52.79 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=31.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.+++++|+||||||..|++|.+-.. ...+||.-|--||...
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----------~~s~iV~D~KgEl~~~ 85 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----------PGSMIVTDPKGELYEK 85 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----------cCCEEEEECCCcHHHH
Confidence 5799999999999999999987432 1246677777777654
No 376
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.80 E-value=1.7 Score=48.05 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=23.6
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..+.+++|+||+|+|....+ ..+.+.++..+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998875432 23333444434445555543
No 377
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.76 E-value=2.1 Score=47.83 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=17.4
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
+.+|++||.|+|||....+ +...+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~-lA~~l~ 63 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI-LAKAVN 63 (585)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHhc
Confidence 4469999999999975543 334443
No 378
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.74 E-value=1.7 Score=44.70 Aligned_cols=82 Identities=12% Similarity=0.038 Sum_probs=41.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC--C-----------CCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcC
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVV--P-----------GDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNG 225 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~--~-----------~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~ 225 (494)
+.++++||.|+|||.. ..-+...+....... + ....+..+.+-+...- .+.....+.+.+...
T Consensus 37 ~~~Ll~G~~G~GKt~~-a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~- 112 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSI-ARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNN--GVDDIREILDNVKYA- 112 (355)
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccC--CHHHHHHHHHHHhcC-
Confidence 4578999999999953 334445554321100 0 0012344555443110 000112233333221
Q ss_pred cceecccceEEEEEcccchhcc
Q 042373 226 VKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 226 ~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
-.+..-++||+||+|.|..
T Consensus 113 ---p~~~~~~vviidea~~l~~ 131 (355)
T TIGR02397 113 ---PSSGKYKVYIIDEVHMLSK 131 (355)
T ss_pred ---cccCCceEEEEeChhhcCH
Confidence 1245567999999998864
No 379
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=2.1 Score=47.47 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=57.1
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCC--ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENP--VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~p--tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
-|=.+|++.|--..+...|... +..| .|-+-+++..- .-.-+++++|+|+||||.. ..+ .+. .
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~a-I~~PiK~pd~~k~lGi~-~PsGvLL~GPPGCGKTLlA-----KAV-ANE-------a 569 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMA-ILAPIKRPDLFKALGID-APSGVLLCGPPGCGKTLLA-----KAV-ANE-------A 569 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHH-HhhhccCHHHHHHhCCC-CCCceEEeCCCCccHHHHH-----HHH-hhh-------c
Confidence 3457899998666666655431 1111 12222222111 1356999999999999732 222 111 1
Q ss_pred CeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 196 PVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
..-.|-+--=||..-. +.-.|-+.-+-... .-+.-+.+.|||+|.|.-
T Consensus 570 g~NFisVKGPELlNkYVGESErAVR~vFqRA----R~saPCVIFFDEiDaL~p 618 (802)
T KOG0733|consen 570 GANFISVKGPELLNKYVGESERAVRQVFQRA----RASAPCVIFFDEIDALVP 618 (802)
T ss_pred cCceEeecCHHHHHHHhhhHHHHHHHHHHHh----hcCCCeEEEecchhhcCc
Confidence 1123334444565543 33333333222211 123456889999999884
No 380
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.41 E-value=0.45 Score=48.77 Aligned_cols=82 Identities=23% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh--hhhHHHHHHHhcCcceeccc
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV--RRGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~--TPgrl~dll~~~~~~~~~l~ 232 (494)
=++..|+++++|||||||+. .-.|.++++- |.++-=+-|-.=|-=++ --..+..+|...... +..-
T Consensus 94 EL~KSNILLiGPTGsGKTlL--AqTLAk~LnV---------PFaiADATtLTEAGYVGEDVENillkLlqaadyd-V~rA 161 (408)
T COG1219 94 ELSKSNILLIGPTGSGKTLL--AQTLAKILNV---------PFAIADATTLTEAGYVGEDVENILLKLLQAADYD-VERA 161 (408)
T ss_pred eeeeccEEEECCCCCcHHHH--HHHHHHHhCC---------CeeeccccchhhccccchhHHHHHHHHHHHcccC-HHHH
Confidence 35567999999999999974 3456666553 33332222111110000 011244455443221 1112
Q ss_pred ceEEEEEcccchhccc
Q 042373 233 RVTYLVLDEADRMFDM 248 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~ 248 (494)
.-..+.+||.|.+...
T Consensus 162 erGIIyIDEIDKIark 177 (408)
T COG1219 162 ERGIIYIDEIDKIARK 177 (408)
T ss_pred hCCeEEEechhhhhcc
Confidence 3357889999998754
No 381
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.36 E-value=3.2 Score=44.73 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=34.8
Q ss_pred ceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 233 RVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
..++||+|.+-++.. ......+..+...+.++.-++.++|+........++.
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 348999999976542 2233455666666667777888899887665555544
No 382
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=88.34 E-value=1 Score=48.14 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
...++++.+|||+|||...
T Consensus 107 ~~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 4578999999999999744
No 383
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.33 E-value=2.1 Score=47.88 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=26.5
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
..+.+++|+||+|+|....| ..+.++++..+...-+|+. .|-+..+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~-tte~~kll 162 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFA-TTEPEKVL 162 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEE-eCChHhhH
Confidence 45778999999999875432 2333444443333444443 35554443
No 384
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.31 E-value=3.7 Score=46.25 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHc---CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS---GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~---grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+|.++--++.+...|... +.. ...+|++||.|+|||..... +...++
T Consensus 13 ~~f~~liGq~~i~~~L~~~---------------l~~~rl~~a~Lf~Gp~G~GKttlA~~-lAk~L~ 63 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNA---------------LISNRIAPAYLFTGPRGTGKTSSARI-LAKSLN 63 (620)
T ss_pred CcHhhccChHHHHHHHHHH---------------HHcCCCCceEEEECCCCCChHHHHHH-HHHHhc
Confidence 5566665566666655432 111 24679999999999975443 333443
No 385
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.14 E-value=1.1 Score=46.85 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=50.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
.+|+.+|.|+|||... +++....... .-+-+-++-|..-.. .+.+++........-.++=++|.+
T Consensus 164 SmIlWGppG~GKTtlA------rlia~tsk~~---SyrfvelSAt~a~t~------dvR~ife~aq~~~~l~krkTilFi 228 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA------RLIASTSKKH---SYRFVELSATNAKTN------DVRDIFEQAQNEKSLTKRKTILFI 228 (554)
T ss_pred ceEEecCCCCchHHHH------HHHHhhcCCC---ceEEEEEeccccchH------HHHHHHHHHHHHHhhhcceeEEEe
Confidence 7899999999999632 2222111111 123344444444333 344555543222233456678999
Q ss_pred cccchhcccC---ChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 240 DEADRMFDMG---FEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 240 DEaD~ml~~g---f~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
||+||....+ |.+.|+ +--+++..||-
T Consensus 229 DEiHRFNksQQD~fLP~VE--------~G~I~lIGATT 258 (554)
T KOG2028|consen 229 DEIHRFNKSQQDTFLPHVE--------NGDITLIGATT 258 (554)
T ss_pred HHhhhhhhhhhhcccceec--------cCceEEEeccc
Confidence 9999976432 444433 33456667763
No 386
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=88.13 E-value=1.2 Score=45.33 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=34.3
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhc-------CCCcEEEecCCCChHHHHHHHh
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIR-------PDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-------~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
=+++|+||+|.|- .|..+.+.-.++..+ ++.-.|++|.+-..++-.++..
T Consensus 179 rslFIFDE~DKmp-~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~ 235 (344)
T KOG2170|consen 179 RSLFIFDEVDKLP-PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALE 235 (344)
T ss_pred CceEEechhhhcC-HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHH
Confidence 3689999999986 455555555555432 2345788999888877766554
No 387
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=87.98 E-value=0.74 Score=45.90 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 212 VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 212 ~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
+||+||..++..+ .+.++++.+||||--|+
T Consensus 183 GTP~Rl~kLle~~---~L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 183 GTPGRLSKLLENG---ALSLSNLKRIVLDWSYL 212 (252)
T ss_pred eChHHHHHHHHcC---CCCcccCeEEEEcCCcc
Confidence 8999999999775 45789999999997543
No 388
>PRK11054 helD DNA helicase IV; Provisional
Probab=87.98 E-value=1.6 Score=49.74 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=44.6
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++-|+.|+- ....++++.|..|||||.+.+--+...+.... ..+..+|+|+.||..|..+
T Consensus 195 ~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em 257 (684)
T PRK11054 195 SPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEM 257 (684)
T ss_pred CCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHH
Confidence 468999999874 33467899999999999865544333332211 1134799999999999876
No 389
>PF12846 AAA_10: AAA-like domain
Probab=87.84 E-value=0.79 Score=45.41 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=29.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
++++++|+||||||.... .++..+... +..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~--------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR--------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc--------CCCEEEEcCCchHHH
Confidence 679999999999997666 555555443 566777766655543
No 390
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=87.68 E-value=0.76 Score=48.49 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=34.9
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
-.++.+..|||||.+..+-++..++... .+..+|++-||..-..+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~------~~~~~~~~r~~~~sl~~ 47 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK------KQQNILAARKVQNSIRD 47 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC------CCcEEEEEehhhhHHHH
Confidence 3578899999999999998888887751 15678989898774443
No 391
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=87.67 E-value=0.77 Score=48.33 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcCccee-cccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKIT-NLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~-~l~~l~~ 236 (494)
+-+++++|.|+|||+..-. +...+ +...+++ .--+|.... +.|++++..+-....... .-..-++
T Consensus 149 lgllL~GPPGcGKTllAra-iA~el-----------g~~~i~v-sa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCEL-VFKKM-----------GIEPIVM-SAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred eEEEeeCCCCCCHHHHHHH-HHHHc-----------CCCeEEE-EHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 4678899999999974322 22221 3333333 334555443 677777655543211100 1235679
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|++||+|.++.
T Consensus 216 LFIDEIDA~~g 226 (413)
T PLN00020 216 LFINDLDAGAG 226 (413)
T ss_pred EEEehhhhcCC
Confidence 99999998774
No 392
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=87.63 E-value=19 Score=35.77 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=38.5
Q ss_pred CCCcceEEEEecccCHHHHHHHHHHHHhccCcch-HHHHHHHHHHHH
Q 042373 328 SWLKSCAFRFISEENAIYATDLVKAFELSELVVR-DDLKAVADSFIA 373 (494)
Q Consensus 328 aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp-~~l~~~~~~~~~ 373 (494)
+-|-|..++|..++...|+.-+...++..+-+++ +.|...|-.|..
T Consensus 182 sDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 182 SDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred HHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999988888988888887 688888877764
No 393
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=87.58 E-value=6.2 Score=37.10 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=37.2
Q ss_pred ccceEEEEEcccchhcccCCh--hHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 231 LTRVTYLVLDEADRMFDMGFE--PQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~--~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
-..+++|||||+-..++.|+. +.+..+++.-+...-+|+.--..|+++...+..
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 357899999999999988874 567777887777778888888889888887743
No 394
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.54 E-value=5.5 Score=40.09 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=33.4
Q ss_pred ccceEEEEEcccchhcc-cCChhHHHHHHHhhc------CCCcEEEecCCCChHHHHHH
Q 042373 231 LTRVTYLVLDEADRMFD-MGFEPQITRIVQNIR------PDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~------~~~Q~ilfSAT~~~~v~~l~ 282 (494)
..+.++|++|=+-++.. ......+..+.+.++ ++--++.++||........+
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~ 210 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA 210 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH
Confidence 35678999999987652 223445666666555 55667888998765543333
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=87.52 E-value=0.79 Score=42.75 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=18.2
Q ss_pred cceEEEEEcccchhccc--CChhHHHHHHH
Q 042373 232 TRVTYLVLDEADRMFDM--GFEPQITRIVQ 259 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~--gf~~~i~~Il~ 259 (494)
...+++|+||+-.|=-. +|.+.+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 57789999999887543 47777777666
No 396
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.49 E-value=0.72 Score=51.30 Aligned_cols=46 Identities=24% Similarity=0.151 Sum_probs=30.1
Q ss_pred HHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 135 TFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.++|| .+-|.+.|-.++.. --+++++|||||||... ..++..+.
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 3556665 45566666655543 35789999999999653 45666653
No 397
>PRK11823 DNA repair protein RadA; Provisional
Probab=87.47 E-value=1.9 Score=46.57 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
|.-+++.+++|+|||... +-+...+..+ +.++||++- .+-..|+
T Consensus 80 Gs~~lI~G~pG~GKTtL~-lq~a~~~a~~--------g~~vlYvs~-Ees~~qi 123 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLL-LQVAARLAAA--------GGKVLYVSG-EESASQI 123 (446)
T ss_pred CEEEEEECCCCCCHHHHH-HHHHHHHHhc--------CCeEEEEEc-cccHHHH
Confidence 466788999999999643 3333333221 446777763 3333443
No 398
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=87.42 E-value=1 Score=54.67 Aligned_cols=60 Identities=23% Similarity=0.190 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|+-|.++|- ..|+++++.|.-|||||.+.+--++..+.... .--..|+|+=|+..|..+
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~------~~~~il~~tFt~~aa~e~ 61 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV------DIDRLLVVTFTNAAAREM 61 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CHhhEEEEeccHHHHHHH
Confidence 5899999997 46899999999999999987777777665321 123589999999998765
No 399
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=87.39 E-value=1.7 Score=49.19 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=27.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+-+++.+.-|+|||. .|+.+.+ ...++|..||+--|+.+
T Consensus 72 s~~~itG~AGsGKst-----~i~~l~~---------~l~cvitg~T~vAAqN~ 110 (828)
T PHA03311 72 SVYLITGTAGAGKST-----SIQTLNE---------NLDCVITGATRVAAQNL 110 (828)
T ss_pred EEEEEecCCCCChHH-----HHHHHHH---------hcCEEEEcchHHHHHhh
Confidence 346778889999986 3444443 23578888888777665
No 400
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=87.35 E-value=1.1 Score=50.89 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh
Q 042373 143 NPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~ 212 (494)
.|++.|..++..+..+ +..++.+.+|||||+... .++... +..+|||+|+.++|.|++
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----------~r~vLIVt~~~~~A~~l~ 74 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----------QRPTLVLAHNKTLAAQLY 74 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHH
Confidence 7999999999998644 257799999999997643 233222 346999999999999864
No 401
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=87.25 E-value=0.96 Score=51.72 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=45.4
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++-|.+++-. ....+++.|..|||||.+..-=+.. +...... .....|+|+-|+..|..+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~-Li~~~~v----~p~~IL~lTFTnkAA~em 65 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAW-LLSVENA----SPHSIMAVTFTNKAAAEM 65 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHH-HHHcCCC----CHHHeEeeeccHHHHHHH
Confidence 4689999998854 3568999999999999875544443 3332111 134689999999998876
No 402
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.20 E-value=0.83 Score=51.01 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=35.4
Q ss_pred CCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 143 NPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+|+.||.+.+..+. .|+=-|+-+|||+|||++.+-..+.++..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 78999988776544 68877888999999999998888887754
No 403
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=87.13 E-value=2.1 Score=50.36 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=42.6
Q ss_pred CCccceeeccccccCCCCC--------CceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccC
Q 042373 286 NVCNLSIANSVRARGLDEK--------ELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEEN 342 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~--------~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~ 342 (494)
..-.|-|||+.|+||-||. +==+||.-..+.|..---|-.||+|| .|.+-.|++=+|
T Consensus 675 ~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 675 QPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 4556899999999999986 22368888888887777775566555 677888887554
No 404
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=86.98 E-value=2.8 Score=44.72 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH-cCCCCCCCCCCCeEEEEc---cchhHHHh
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW-EQPPVVPGDDSPVGLVMA---PTGELVRQ 210 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~-~~~~~~~~~~~p~aLIl~---PTreLa~Q 210 (494)
|.=+++.|++|+|||. |.+-+..++. .+ +-.+++++ |..+|+..
T Consensus 194 g~liviag~pg~GKT~-~al~ia~~~a~~~--------g~~v~~fSlEm~~~~l~~R 241 (421)
T TIGR03600 194 GDLIVIGARPSMGKTT-LALNIAENVALRE--------GKPVLFFSLEMSAEQLGER 241 (421)
T ss_pred CceEEEEeCCCCCHHH-HHHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHH
Confidence 4456677999999994 5665655543 22 33466665 44444443
No 405
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.94 E-value=2.3 Score=45.54 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=54.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
+.++..+|.|+|||+. .+.+-... + -+++=.---.|+.-. +--..++..|-. ......-.++
T Consensus 187 rglLLfGPpgtGKtmL-----~~aiAsE~-------~-atff~iSassLtsK~~Ge~eK~vralf~----vAr~~qPsvi 249 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTML-----AKAIATES-------G-ATFFNISASSLTSKYVGESEKLVRALFK----VARSLQPSVI 249 (428)
T ss_pred chhheecCCCCchHHH-----HHHHHhhh-------c-ceEeeccHHHhhhhccChHHHHHHHHHH----HHHhcCCeEE
Confidence 6788999999999962 22222111 1 122222222333332 222344444432 1234456788
Q ss_pred EEcccchhcccC--------ChhHHHHHHH----hhcCCCcEEEecCCC-ChHHHHHH
Q 042373 238 VLDEADRMFDMG--------FEPQITRIVQ----NIRPDRQAVLFSPTF-PPRVEILA 282 (494)
Q Consensus 238 VlDEaD~ml~~g--------f~~~i~~Il~----~l~~~~Q~ilfSAT~-~~~v~~l~ 282 (494)
++||+|.++..- -+-..+.++. ...++-++++++||- |.++...+
T Consensus 250 fidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~ 307 (428)
T KOG0740|consen 250 FIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAA 307 (428)
T ss_pred EechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHH
Confidence 899999998532 1112222222 223455777888884 44444333
No 406
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=86.90 E-value=10 Score=36.21 Aligned_cols=53 Identities=15% Similarity=0.294 Sum_probs=41.7
Q ss_pred cceEEEEEcccchhcccCCh--hHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDMGFE--PQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~--~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.++++|||||.-..+..|+. +.|..++..-|...-+|+..-..|+.+.+++..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 36899999999999988864 467777776666667777777789998888765
No 407
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=86.89 E-value=1.6 Score=41.01 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=29.6
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecC
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSP 272 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSA 272 (494)
.+-+++++||.+.-+|......+..++..+.. +.++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45688999999999988777777666666533 366666554
No 408
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=86.83 E-value=0.46 Score=53.15 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
++++++||||||||..|++|-+-.+ +..+||+=|--|+...
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----------~~S~VV~DpKGEl~~~ 199 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----------EDSVVVHDIKLENYEL 199 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----------CCCEEEEeCcHHHHHH
Confidence 5799999999999999999998664 2346777777777754
No 409
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=86.79 E-value=6.5 Score=36.08 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=24.8
Q ss_pred ceEEEEEcccchhc-ccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHH
Q 042373 233 RVTYLVLDEADRMF-DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 233 ~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
..+++|+|....+. +......+..+.....+..-++.+++.........
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~ 131 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQ 131 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHH
Confidence 45678888877643 11223333333333334555566666554444333
No 410
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.75 E-value=3.8 Score=45.75 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=25.9
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
..+.+++|+||+|+|.... ...+.++++.-+...-+| |.+|-+..+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fI-l~t~~~~kl 162 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFI-FATTEPHKV 162 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEE-EEeCChhhh
Confidence 4577899999999887433 233444444433333444 444544433
No 411
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=86.75 E-value=2.8 Score=40.67 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=44.0
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.+-+.+||||.-.=+|.-....+..++.+++..-.+++||.-.-++++.++..
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 46679999999777776677888888999988888999999888888888743
No 412
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.58 E-value=3.1 Score=46.13 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=23.2
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..+-+++||||+|+|-...+ ..+.+.++..+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 34668999999999875432 33444444433344444433
No 413
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=86.51 E-value=1.6 Score=48.56 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=27.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHc---CCCEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS---GLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~---grdvi~~a~TGSGKTlafll 177 (494)
.+|+++--++.+.+.|+.. +.. ++-.|++||.|+|||.+.-+
T Consensus 13 ~~f~~viGq~~v~~~L~~~---------------i~~~~~~hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNA---------------IKQGKISHAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred CcHHhccCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 4566665566666665432 111 24578899999999975544
No 414
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.47 E-value=1 Score=46.35 Aligned_cols=58 Identities=22% Similarity=0.195 Sum_probs=37.0
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHH-HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPA-SALIISGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~a-ip~il~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
|..|..-.++.. .|.+ +..+++.|..- |-++-.+++++++++||||||. ++.+++..+
T Consensus 109 IRk~~~~~~t~~---~l~~--~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 109 IRKFSDEPITPE---DLIE--YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred EEcCCCCCCCHH---HHhh--cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 334444444443 3333 44567777554 5556678999999999999995 455555554
No 415
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.39 E-value=3.2 Score=48.28 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=34.1
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
=-+||||++|.+-+......+..++.+.++...+|+.|-+.|
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 358999999998666566788889999988888888887754
No 416
>PRK13531 regulatory ATPase RavA; Provisional
Probab=86.39 E-value=1.6 Score=47.49 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 149 APASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 149 ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
..++-++++|.++++.+|+|+|||...
T Consensus 30 ~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 30 RLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHccCCCEEEECCCChhHHHHH
Confidence 344556779999999999999999743
No 417
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.38 E-value=0.71 Score=42.93 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=28.7
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|+.+++|||||..|..-.... .+ .++++.+-++|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~------------~~-~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPL------------LP-GIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhh------------cC-CeEEECHHHHhhhc
Confidence 4677999999998876543322 22 68889999999998
No 418
>PRK10867 signal recognition particle protein; Provisional
Probab=86.22 E-value=4.5 Score=43.57 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=34.0
Q ss_pred cceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
...++||+|=+-++-. ......+..+...+.+..-++.++|+........++.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~ 235 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKA 235 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHH
Confidence 4578999999987642 2223445555555656555777888877666555554
No 419
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=86.20 E-value=1.2 Score=50.96 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=45.4
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..++|-|.+++-. ....+++.|..|||||.+..-=+...+ ..... ..-..|+|+-|+..|..+
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li-~~~~v----~p~~IL~lTFT~kAA~Em 70 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLM-QVENA----SPYSIMAVTFTNKAAAEM 70 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCC----ChhHeEeeeccHHHHHHH
Confidence 3589999998864 346899999999999987655444333 22111 133689999999999887
No 420
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.09 E-value=0.68 Score=46.07 Aligned_cols=45 Identities=24% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
+..+.+++++|+||||||.. +-.++..+-.. .-+++++-.+.|+-
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i~~~--------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEIPPE--------DERIVTIEDPPELR 168 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT--------TSEEEEEESSS-S-
T ss_pred cccceEEEEECCCccccchH-HHHHhhhcccc--------ccceEEecccccee
Confidence 34578999999999999963 45555554332 23556665666653
No 421
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.07 E-value=1.2 Score=40.10 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=52.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC---CCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD---DSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~---~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~ 233 (494)
.|.-+.+.+++|+|||..+ -++..+. +...+. .+...+.++|. .+.|....+.-. ..-+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl--~~l~G~~---~~~~G~i~~~~~~~i~~~~~-------lS~G~~~rv~la----ral~~~ 88 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLL--KLIAGEL---EPDEGIVTWGSTVKIGYFEQ-------LSGGEKMRLALA----KLLLEN 88 (144)
T ss_pred CCCEEEEECCCCCCHHHHH--HHHcCCC---CCCceEEEECCeEEEEEEcc-------CCHHHHHHHHHH----HHHhcC
Confidence 5677889999999999622 2232221 111110 01123334443 122221111111 012446
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
-+++++||.-.=+|......+..++..+. .+++++.-
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th 125 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 67999999988888777777777776652 34555443
No 422
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.97 E-value=4.7 Score=42.79 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.8
Q ss_pred CEEEEcCCCCCchhhhHH
Q 042373 160 DSVAITETGSGKTLAFLL 177 (494)
Q Consensus 160 dvi~~a~TGSGKTlafll 177 (494)
.+|+++|.|+|||.+..+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999976544
No 423
>PF14516 AAA_35: AAA-like domain
Probab=85.95 E-value=7.4 Score=40.25 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=34.0
Q ss_pred CCCCChhHHHHHHHHHc-CCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 141 HENPVAIQAPASALIIS-GLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~-grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
|-.-.|+.+.++..+.. |+-+.+.||-.+|||. .+.-+++++..
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTS-ll~~l~~~l~~ 57 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTS-LLLRLLERLQQ 57 (331)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEECcccCCHHH-HHHHHHHHHHH
Confidence 33444699999999998 9999999999999995 34555666543
No 424
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=5.3 Score=40.90 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=103.5
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
+|-..|++..=-+.-.++|++.= .-|| =+|.++.| +-+++.+|+|+||+ |+.-.+.. .
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAV---ILPI---KFPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVAT---E------ 189 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAV---ILPI---KFPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVAT---E------ 189 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhe---eecc---cchhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHh---h------
Confidence 45566877533334455555421 1111 14788888 46899999999997 44333322 1
Q ss_pred CCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC---hhHHHHHHHh----h---
Q 042373 193 DDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF---EPQITRIVQN----I--- 261 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf---~~~i~~Il~~----l--- 261 (494)
.....+-+.+-.|+... +...+|+.-|-.- ..-+.-+++.+||+|.|....- .+..++|-.. +
T Consensus 190 --AnSTFFSvSSSDLvSKWmGESEkLVknLFem----ARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGV 263 (439)
T KOG0739|consen 190 --ANSTFFSVSSSDLVSKWMGESEKLVKNLFEM----ARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV 263 (439)
T ss_pred --cCCceEEeehHHHHHHHhccHHHHHHHHHHH----HHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc
Confidence 12567778888888776 4445554433211 1123446789999998876432 2233333221 1
Q ss_pred c-CCCcEEEecCCCChHHHHHH-HhcCCccceeec-cccccCCCCCCceEEEec-CCCCC-HhHHHhhhcc--CCCcceE
Q 042373 262 R-PDRQAVLFSPTFPPRVEILA-RKTNVCNLSIAN-SVRARGLDEKELELVINF-DAPND-YEDYVHHCCQ--SWLKSCA 334 (494)
Q Consensus 262 ~-~~~Q~ilfSAT~~~~v~~l~-~~~g~~~ILVaT-dv~~rGlDi~~v~~VIny-d~P~s-~~~yvhR~GR--aGr~G~a 334 (494)
. .+--++.+.||-.+.+..-+ ++.-.-+|.|-- +..+|- .-+=||. +.|.+ .+.-.+-.|| -|-.|.-
T Consensus 264 G~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~-----~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsD 338 (439)
T KOG0739|consen 264 GNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA-----RMFKLHLGDTPHVLTEQDFKELARKTEGYSGSD 338 (439)
T ss_pred ccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhh-----hhheeccCCCccccchhhHHHHHhhcCCCCcCc
Confidence 2 23457788999777665443 433333343322 122221 1111222 22332 2233456666 5667777
Q ss_pred EEEeccc
Q 042373 335 FRFISEE 341 (494)
Q Consensus 335 itfv~~~ 341 (494)
|+++..+
T Consensus 339 isivVrD 345 (439)
T KOG0739|consen 339 ISIVVRD 345 (439)
T ss_pred eEEEehh
Confidence 7777654
No 425
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=85.79 E-value=1.1 Score=42.17 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHH-cCCCEEEEcCCCCCchhh
Q 042373 144 PVAIQAPASALII-SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 144 ptpiQ~~aip~il-~grdvi~~a~TGSGKTla 174 (494)
.++-|...+...+ .|..++++++||||||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4566666666554 578999999999999974
No 426
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=85.70 E-value=3.6 Score=40.23 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=25.0
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|.-+++.+++|||||...+--+...+.. |-.+++++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---------ge~~lyvs 56 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGIYVA 56 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---------CCcEEEEE
Confidence 5788999999999997544434444422 55677776
No 427
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.68 E-value=1.7 Score=45.34 Aligned_cols=64 Identities=22% Similarity=0.143 Sum_probs=38.8
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 133 LETFSKLNHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
+..|.+.|+ .++.+...+..+. .+++++++++||||||.. +-.++..+-. ..+.+++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~---------~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAP---------DERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCC---------CCcEEEECCcceec
Confidence 455556666 4556666665554 557999999999999963 2233332211 23456666666664
No 428
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=85.61 E-value=0.57 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l 183 (494)
++++++||||||||..|++|-+-.+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~ 164 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF 164 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC
Confidence 4899999999999999999987653
No 429
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.56 E-value=2.8 Score=45.73 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCCCchhhhHH
Q 042373 158 GLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafll 177 (494)
|+-+.+++|||+|||.....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 55678899999999986554
No 430
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=85.42 E-value=3.5 Score=48.79 Aligned_cols=105 Identities=25% Similarity=0.390 Sum_probs=57.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH-Hhh---------------hhhh-------
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV-RQQ---------------VRRG------- 215 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa-~Qi---------------~TPg------- 215 (494)
-|-|+.-.-|-|||.- .|.++.|+--... .=|| -||+|||--+. ..+ +++.
T Consensus 635 lNGILADEmGLGKTIQ-tISllAhLACeeg----nWGP-HLIVVpTsviLnWEMElKRwcPglKILTYyGs~kErkeKRq 708 (1958)
T KOG0391|consen 635 LNGILADEMGLGKTIQ-TISLLAHLACEEG----NWGP-HLIVVPTSVILNWEMELKRWCPGLKILTYYGSHKERKEKRQ 708 (1958)
T ss_pred ccceehhhhcccchhH-HHHHHHHHHhccc----CCCC-ceEEeechhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhh
Confidence 3668888999999964 5667777754321 1155 48888885432 222 1111
Q ss_pred ------HHH------HHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 216 ------RMI------DLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 216 ------rl~------dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.|. .++.. ....+.-.++.|+||||||.+-+| ..+-..-+-+++..++ +|++.|
T Consensus 709 gW~kPnaFHVCItSYklv~q-d~~AFkrkrWqyLvLDEaqnIKnf--ksqrWQAllnfnsqrR-LLLtgT 774 (1958)
T KOG0391|consen 709 GWAKPNAFHVCITSYKLVFQ-DLTAFKRKRWQYLVLDEAQNIKNF--KSQRWQALLNFNSQRR-LLLTGT 774 (1958)
T ss_pred cccCCCeeEEeehhhHHHHh-HHHHHHhhccceeehhhhhhhcch--hHHHHHHHhccchhhe-eeecCC
Confidence 100 00000 011122457899999999998654 4444444444544444 455555
No 431
>PHA00350 putative assembly protein
Probab=85.38 E-value=2.3 Score=45.18 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=17.3
Q ss_pred EEEEcCCCCCchhhhHH-HHHHHHH
Q 042373 161 SVAITETGSGKTLAFLL-PMLRHIW 184 (494)
Q Consensus 161 vi~~a~TGSGKTlafll-pil~~l~ 184 (494)
.++.+..|||||+..+. -++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 46789999999987765 3444443
No 432
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=85.38 E-value=4.5 Score=43.44 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=39.9
Q ss_pred cceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---cCCccceeec
Q 042373 232 TRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---TNVCNLSIAN 294 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaT 294 (494)
...++|++|=+-++-.. .....+..+...+.++.-++.++||........++. .-.+.-+|-|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlT 247 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIIT 247 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEE
Confidence 36789999999875421 233455555556666767888999987665555544 2234455555
No 433
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=85.20 E-value=0.47 Score=53.51 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=32.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
++++++|+||||||..+++|.|... +..+||+=|-.|+..
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-----------~~S~VV~D~KGE~~~ 215 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-----------GHSSVITDLKGELWA 215 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-----------CCCEEEEeCcHHHHH
Confidence 5799999999999999999998542 335777777777754
No 434
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=85.16 E-value=2.6 Score=47.66 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+.+++++|+|+|||..
T Consensus 186 ~gill~G~~G~GKt~~ 201 (644)
T PRK10733 186 KGVLMVGPPGTGKTLL 201 (644)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5699999999999974
No 435
>PTZ00293 thymidine kinase; Provisional
Probab=85.11 E-value=2.1 Score=41.55 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hh-HHHhhhhh----------hHHHHHHHh
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GE-LVRQQVRR----------GRMIDLLCK 223 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---re-La~Qi~TP----------grl~dll~~ 223 (494)
|+=.++++|-+||||.-.+- .+.+.... +..++++-|. |. -...+.|. ..+.+++..
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~a--------g~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~ 74 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTYS--------EKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLET 74 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHHc--------CCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHh
Confidence 44457899999999964443 33333222 4456777663 32 11111110 112233221
Q ss_pred cCcceecccceEEEEEcccchh
Q 042373 224 NGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~m 245 (494)
+..+++|.+||++-+
T Consensus 75 -------~~~~dvI~IDEaQFf 89 (211)
T PTZ00293 75 -------AKNYDVIAIDEGQFF 89 (211)
T ss_pred -------ccCCCEEEEEchHhh
Confidence 356799999999864
No 436
>PRK08506 replicative DNA helicase; Provisional
Probab=85.00 E-value=4.4 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.=+++.|+||.||| +|.+-+..++.
T Consensus 193 ~LivIaarpg~GKT-~fal~ia~~~~ 217 (472)
T PRK08506 193 DLIIIAARPSMGKT-TLCLNMALKAL 217 (472)
T ss_pred ceEEEEcCCCCChH-HHHHHHHHHHH
Confidence 34566699999999 46666666654
No 437
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.99 E-value=2.2 Score=47.11 Aligned_cols=40 Identities=10% Similarity=0.192 Sum_probs=24.9
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
+.+.+++|+||||+|.... ...+.++++..++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578899999999987433 233444455444555555544
No 438
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=84.84 E-value=1.9 Score=41.58 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=33.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC--CCeEEEEccchhHHHhh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD--SPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~--~p~aLIl~PTreLa~Qi 211 (494)
.|+=.-+++|.|.||+. ++.++.++.... .+.- ...-+-=+|+.+||..+
T Consensus 26 ~g~iTs~IGPNGAGKST--LLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 26 KGGITSIIGPNGAGKST--LLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CCceeEEECCCCccHHH--HHHHHHHhcccc---CceEEEeeeecccCChHHHHHHH
Confidence 46667789999999986 677888876432 1110 12334557999999876
No 439
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=84.83 E-value=1 Score=42.70 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCCCchh
Q 042373 158 GLDSVAITETGSGKTL 173 (494)
Q Consensus 158 grdvi~~a~TGSGKTl 173 (494)
++-+++.||.|+|||.
T Consensus 20 ~~~~~l~G~rg~GKTs 35 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTS 35 (234)
T ss_dssp SSEEEEEESTTSSHHH
T ss_pred CcEEEEEcCCcCCHHH
Confidence 3678888999999996
No 440
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=84.75 E-value=0.92 Score=48.36 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 152 SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 152 ip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|.-...+++++.|+||||||.. +..++..+... +..++|+=|..++....
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~--------~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR--------GDRAIIYDPNGGFVSKF 86 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc--------CCCEEEEeCCcchhHhh
Confidence 44455568999999999999974 54556555443 44677777877776544
No 441
>PRK05595 replicative DNA helicase; Provisional
Probab=84.58 E-value=3.7 Score=44.26 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=28.3
Q ss_pred CChhHHHHHHHHHcC---CCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 144 PVAIQAPASALIISG---LDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 144 ptpiQ~~aip~il~g---rdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
||.++ .+-.++.| .++ ++.|+||+||| +|.+-+..++.... |..+++++.
T Consensus 185 ~tg~~--~ld~~~~G~~~g~liviaarpg~GKT-~~al~ia~~~a~~~-------g~~vl~fSl 238 (444)
T PRK05595 185 ASGFR--ELDAKTSGFQKGDMILIAARPSMGKT-TFALNIAEYAALRE-------GKSVAIFSL 238 (444)
T ss_pred cCChH--HHHHhcCCCCCCcEEEEEecCCCChH-HHHHHHHHHHHHHc-------CCcEEEEec
Confidence 45443 33444443 345 55799999999 46666665543111 445667653
No 442
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.50 E-value=1.9 Score=47.19 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=28.5
Q ss_pred HHHhCCCCCCChhHHHHHHHHHcC-CC-EEEEcCCCCCchhhhHHHHHHHH
Q 042373 135 TFSKLNHENPVAIQAPASALIISG-LD-SVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il~g-rd-vi~~a~TGSGKTlafllpil~~l 183 (494)
.|..+|| ++-|.+.+-.++.. +. +++++|||||||... -.++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3455665 55566666665544 33 678999999999643 3345554
No 443
>PRK08760 replicative DNA helicase; Provisional
Probab=84.48 E-value=4.1 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=17.0
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~ 184 (494)
=+++.|++|+||| +|.+-+..++.
T Consensus 231 LivIaarPg~GKT-afal~iA~~~a 254 (476)
T PRK08760 231 LIILAARPAMGKT-TFALNIAEYAA 254 (476)
T ss_pred eEEEEeCCCCChh-HHHHHHHHHHH
Confidence 3455699999999 46666666553
No 444
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.30 E-value=3 Score=47.91 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=37.1
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
--|||+|..|++-+.-....++.++++.|++.+.++.|-+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 459999999999988888899999999999999998887755
No 445
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=84.29 E-value=0.83 Score=48.32 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=37.2
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhH
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGR 216 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgr 216 (494)
.-...++++++|.||||||. ++.+++..+..+ +-+++|.=|.-++......|++
T Consensus 11 ~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~--------g~~~iI~D~kg~~~~~f~~~~~ 64 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQ-AIRHLLDQIRAR--------GDRAIIYDPKGEFTERFYRPGK 64 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT--------T-EEEEEEETTHHHHHH--TT-
T ss_pred cchhhCcEEEECCCCCCHHH-HHHHHHHHHHHc--------CCEEEEEECCchHHHHhcCCCC
Confidence 33456899999999999996 566788887665 4578888888888776666654
No 446
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=84.28 E-value=5.7 Score=40.85 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCC-------CCCCCCCeEEEEccchhHHH-------------------hh-
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPV-------VPGDDSPVGLVMAPTGELVR-------------------QQ- 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~-------~~~~~~p~aLIl~PTreLa~-------------------Qi- 211 (494)
.-.+++||.|+||+.. ...+...++....- -...+.|-.+++.|+...-. +|
T Consensus 27 ha~Lf~G~~G~Gk~~~-A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 27 PAYLFAGPEGVGRKLA-ALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 4789999999999953 34455555433210 01234688899998631100 11
Q ss_pred -hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 212 -VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 212 -~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
-....+...+.... .....+++|+|+||.|.... ...+.++++.-+ +..+|+.+.
T Consensus 106 id~ir~i~~~l~~~p----~~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 106 LEQIREIKRFLSRPP----LEAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHHHHHHccCc----ccCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 01112333343321 23577899999999987432 334444555444 554554443
No 447
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=84.20 E-value=1.2 Score=52.16 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.|+++|...--.+. +--|+-..||=||||+..+|+.-..+. |.-+-|++..--||.
T Consensus 169 ~~yDVQliGgivLh--~G~IAEM~TGEGKTLvAtlp~yLnAL~---------GkgVHvVTVNDYLA~ 224 (1112)
T PRK12901 169 VHYDVQLIGGVVLH--QGKIAEMATGEGKTLVATLPVYLNALT---------GNGVHVVTVNDYLAK 224 (1112)
T ss_pred cccchHHhhhhhhc--CCceeeecCCCCchhHHHHHHHHHHHc---------CCCcEEEEechhhhh
Confidence 45666655443444 445889999999999999999877765 334555555655654
No 448
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=84.11 E-value=4.4 Score=40.44 Aligned_cols=29 Identities=34% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHHHcCC-CEEEEcCCCCCchhhhHHHHHHH
Q 042373 153 ALIISGL-DSVAITETGSGKTLAFLLPMLRH 182 (494)
Q Consensus 153 p~il~gr-dvi~~a~TGSGKTlafllpil~~ 182 (494)
+.+-.|+ =+.++++-|||||...- .++..
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s 74 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLAS 74 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHh
Confidence 4455566 67788999999998666 34433
No 449
>PRK07004 replicative DNA helicase; Provisional
Probab=84.06 E-value=4.4 Score=43.99 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
|.=+++.|.+|+|||. |.+-+..++.
T Consensus 213 g~liviaarpg~GKT~-~al~ia~~~a 238 (460)
T PRK07004 213 GELIIVAGRPSMGKTA-FSMNIGEYVA 238 (460)
T ss_pred CceEEEEeCCCCCccH-HHHHHHHHHH
Confidence 3445667999999994 6666665543
No 450
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.05 E-value=10 Score=37.05 Aligned_cols=139 Identities=11% Similarity=0.151 Sum_probs=83.9
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc---cchhHHHhh------------------------
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA---PTGELVRQQ------------------------ 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~---PTreLa~Qi------------------------ 211 (494)
.=+++-++.|+|||+.-..-+.-.+.. +-.+.+++ ++|+...|.
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~---------g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMN---------GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhC---------CceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc
Confidence 346788999999997444333333322 44555554 779999887
Q ss_pred ------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhc---CCCcEEEecCC---CChHHH
Q 042373 212 ------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR---PDRQAVLFSPT---FPPRVE 279 (494)
Q Consensus 212 ------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~---~~~Q~ilfSAT---~~~~v~ 279 (494)
-....+++.+.. .....+-+++|+|=...+.-..-+..+..++..++ ..-.+|++++- ++.++.
T Consensus 100 ~~~~~~~~~~~~L~~l~~----~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~ 175 (235)
T COG2874 100 PVNWGRRSARKLLDLLLE----FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVL 175 (235)
T ss_pred ccccChHHHHHHHHHHHh----hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHHH
Confidence 011223333332 12245667899999887775554556666666554 34567887764 444433
Q ss_pred HHHHhcCCccceeeccccccCCCCCCceEEEec
Q 042373 280 ILARKTNVCNLSIANSVRARGLDEKELELVINF 312 (494)
Q Consensus 280 ~l~~~~g~~~ILVaTdv~~rGlDi~~v~~VIny 312 (494)
-. -...+.+++-.....-|=|...+--|+-|
T Consensus 176 ~r--irs~~d~~l~L~~~~~Gg~~~~~~~i~K~ 206 (235)
T COG2874 176 TR--IRSACDVYLRLRLEELGGDLIKVLEIVKY 206 (235)
T ss_pred HH--HHHhhheeEEEEhhhhCCeeeEEEEEeee
Confidence 32 35667777777777777776665555555
No 451
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.01 E-value=10 Score=42.79 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.9
Q ss_pred CEEEEcCCCCCchhhhHH
Q 042373 160 DSVAITETGSGKTLAFLL 177 (494)
Q Consensus 160 dvi~~a~TGSGKTlafll 177 (494)
-+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999976543
No 452
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=83.94 E-value=3.9 Score=43.15 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=23.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
|.=+++.+++|+|||...+ -+...+... +..++|++-
T Consensus 82 GslvLI~G~pG~GKStLll-q~a~~~a~~--------g~~VlYvs~ 118 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLL-QVAARLAKR--------GGKVLYVSG 118 (372)
T ss_pred CeEEEEEeCCCCCHHHHHH-HHHHHHHhc--------CCeEEEEEC
Confidence 4667888999999996433 333333221 346777754
No 453
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=83.90 E-value=6.3 Score=42.93 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=59.5
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHh---CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCC
Q 042373 113 EKCAPKPIKTWRQTGLTTKILETFSK---LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPV 189 (494)
Q Consensus 113 g~~~P~pi~~f~~l~L~~~ll~~l~~---~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~ 189 (494)
+.....|..+|.+.+=-..+...++. ..+..|.-.+. --+-..+-+|+.+|.|+|||+..-.... ..
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~---~~~~~~~giLl~GpPGtGKT~lAkava~-----~~-- 300 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRK---LGLRPPKGVLLYGPPGTGKTLLAKAVAL-----ES-- 300 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHh---cCCCCCCeeEEECCCCCCHHHHHHHHHh-----hC--
Confidence 44455677888887633333333322 11222221111 0111224789999999999975443322 10
Q ss_pred CCCCCCCeEEEEccchhHHHhh-hhhhH-HHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 190 VPGDDSPVGLVMAPTGELVRQQ-VRRGR-MIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 190 ~~~~~~p~aLIl~PTreLa~Qi-~TPgr-l~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
+.+..-|..| +|.... +...+ +..++..- .-..-+.|.+||+|.++..
T Consensus 301 ----~~~fi~v~~~--~l~sk~vGesek~ir~~F~~A-----~~~~p~iiFiDEiDs~~~~ 350 (494)
T COG0464 301 ----RSRFISVKGS--ELLSKWVGESEKNIRELFEKA-----RKLAPSIIFIDEIDSLASG 350 (494)
T ss_pred ----CCeEEEeeCH--HHhccccchHHHHHHHHHHHH-----HcCCCcEEEEEchhhhhcc
Confidence 1344444555 665543 33333 33333321 1234568999999999864
No 454
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=83.72 E-value=2.4 Score=38.86 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=19.1
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
+-.++++||...=++......+...+..
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 5689999999887776554544444433
No 455
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=83.69 E-value=0.8 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+++++||||||||..+++|-|-.+
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~ 169 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW 169 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC
Confidence 6899999999999999999988654
No 456
>PRK05748 replicative DNA helicase; Provisional
Probab=83.69 E-value=5.4 Score=43.00 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=18.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.=+++.|+||+||| +|.+-++.++.
T Consensus 204 ~livIaarpg~GKT-~~al~ia~~~a 228 (448)
T PRK05748 204 DLIIVAARPSVGKT-AFALNIAQNVA 228 (448)
T ss_pred ceEEEEeCCCCCch-HHHHHHHHHHH
Confidence 44666799999999 56666666653
No 457
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=83.62 E-value=7.2 Score=41.94 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=34.2
Q ss_pred cceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
...++||+|=+-++.. ......+..+...+.++--++.++|+........++.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~ 234 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKT 234 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHH
Confidence 4578999999987642 2233445555566656555777888877666655544
No 458
>PHA00012 I assembly protein
Probab=83.60 E-value=9.7 Score=39.54 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=33.5
Q ss_pred cceEEEEEcccchhccc---C--ChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDM---G--FEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~---g--f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
..=.++|+||||..+.. + -...+...+...++..-.++|-..-+..+...++.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHH
Confidence 56679999999998863 2 12335555555566555555555556666666654
No 459
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=83.60 E-value=4.5 Score=47.33 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=13.1
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
+++++|||+|||...
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999644
No 460
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=83.24 E-value=1.5 Score=43.54 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=25.6
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre 206 (494)
.++++|++|||||. +++-++..+... -..+++++|+..
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~~--------f~~I~l~t~~~n 52 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRHK--------FDHIFLITPEYN 52 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhccc--------CCEEEEEecCCc
Confidence 68899999999994 666666655432 234566666433
No 461
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=83.23 E-value=6 Score=39.49 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=42.7
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
+..-.+|||||-=.=+|--....+...+..++..--+|+||.-.-..++.||.+
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhh
Confidence 345679999997655555556677777777888888999999888899999887
No 462
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=83.22 E-value=5.3 Score=42.75 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.=+++.|++|+||| +|.+-++.++.
T Consensus 196 ~l~vi~g~pg~GKT-~~~l~~a~~~a 220 (434)
T TIGR00665 196 DLIILAARPSMGKT-AFALNIAENAA 220 (434)
T ss_pred eEEEEEeCCCCChH-HHHHHHHHHHH
Confidence 45677799999999 46665655543
No 463
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=82.99 E-value=1.4 Score=44.63 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=37.3
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
++++.+|+|.|||....+ +..=+... .-+.--| .+-.|+-|..+|. +|..=+.+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I--IA~Emgvn---------~k~tsGp------~leK~gDlaaiLt-------~Le~~DVLFI 109 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI--IANELGVN---------LKITSGP------ALEKPGDLAAILT-------NLEEGDVLFI 109 (332)
T ss_pred eEEeeCCCCCcHHHHHHH--HHHHhcCC---------eEecccc------cccChhhHHHHHh-------cCCcCCeEEE
Confidence 689999999999964332 21111100 0000011 1135666777775 3566678999
Q ss_pred cccchhc
Q 042373 240 DEADRMF 246 (494)
Q Consensus 240 DEaD~ml 246 (494)
||.|+|.
T Consensus 110 DEIHrl~ 116 (332)
T COG2255 110 DEIHRLS 116 (332)
T ss_pred ehhhhcC
Confidence 9999986
No 464
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.70 E-value=2.9 Score=38.53 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=30.1
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+.+-+++++||--.-+|......+..++..+... .+++++.
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~s 152 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIA 152 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence 3466899999998888887788888888777544 4455544
No 465
>PF13871 Helicase_C_4: Helicase_C-like
Probab=82.67 E-value=3.5 Score=41.68 Aligned_cols=71 Identities=11% Similarity=0.282 Sum_probs=54.9
Q ss_pred cCCccceeeccccccCCCCC--------CceEEEecCCCCCHhHHHhhhccCCCcceE----EEEeccc---CHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEK--------ELELVINFDAPNDYEDYVHHCCQSWLKSCA----FRFISEE---NAIYATDL 349 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~--------~v~~VInyd~P~s~~~yvhR~GRaGr~G~a----itfv~~~---~~~~~~~i 349 (494)
.|..+|+|.|+.++-||-.. .-++-|...+|.+....+|..||..|.|.+ |.|+..+ +.+++..+
T Consensus 59 ~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~Rfas~v 138 (278)
T PF13871_consen 59 DGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERRFASTV 138 (278)
T ss_pred CCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHHHHHHHHH
Confidence 89999999999999998653 234466789999999999999998877663 6666544 66777777
Q ss_pred HHHHHh
Q 042373 350 VKAFEL 355 (494)
Q Consensus 350 ~~~l~~ 355 (494)
.+-|+.
T Consensus 139 a~rL~s 144 (278)
T PF13871_consen 139 ARRLES 144 (278)
T ss_pred HHHHhh
Confidence 776654
No 466
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=82.62 E-value=5 Score=44.82 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=31.4
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
|.+=+++|+|||-.-+|.+.+..+...++.-- +++.+.|-.-.+.+..+.
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~h 580 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPTLWNFH 580 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchhhHHHH
Confidence 56778999999988888776666666655421 344444444444444444
No 467
>PRK05973 replicative DNA helicase; Provisional
Probab=82.53 E-value=2.3 Score=42.04 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
..+||... ...-+..|.-+++.|++|+|||...+--+...+ .+ |..++|++
T Consensus 49 ~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~--------Ge~vlyfS 99 (237)
T PRK05973 49 AATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KS--------GRTGVFFT 99 (237)
T ss_pred cCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hc--------CCeEEEEE
Confidence 35566333 333344566788889999999964443333333 21 44577765
No 468
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.38 E-value=2.4 Score=46.12 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHhCCCCCCChhHHHHHHHHHcCC--CEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 136 FSKLNHENPVAIQAPASALIISGL--DSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 136 l~~~g~~~ptpiQ~~aip~il~gr--dvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
|.++|| ++.|.+.+-.++... =+++.+|||||||.. +..++..+..
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 344444 777888777777653 256779999999964 5566666654
No 469
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=82.35 E-value=2.3 Score=48.72 Aligned_cols=63 Identities=21% Similarity=0.100 Sum_probs=44.2
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..++|-|.+++-. ....+++.|..|||||.+..-=+...+... ... .-..|+|+-|+..|..+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~-~i~----P~~IL~lTFT~kAA~em 65 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK-NVA----PWNILAITFTNKAAREM 65 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC-CCC----HHHeeeeeccHHHHHHH
Confidence 4589999998864 356899999999999987665555444321 111 23588888887766655
No 470
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=81.91 E-value=7 Score=40.65 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCCchh
Q 042373 158 GLDSVAITETGSGKTL 173 (494)
Q Consensus 158 grdvi~~a~TGSGKTl 173 (494)
+..+++++|-|||||.
T Consensus 49 snsviiigprgsgkT~ 64 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTI 64 (408)
T ss_pred CCceEEEccCCCCceE
Confidence 4799999999999996
No 471
>PRK06321 replicative DNA helicase; Provisional
Probab=81.83 E-value=7.1 Score=42.55 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHcC---CCE-EEEcCCCCCchhhhHHHHHHHHH
Q 042373 144 PVAIQAPASALIISG---LDS-VAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 144 ptpiQ~~aip~il~g---rdv-i~~a~TGSGKTlafllpil~~l~ 184 (494)
||.+ ..+-.++.| .++ |+.|.+|.|||. |.+-+..++.
T Consensus 210 ~tG~--~~LD~~t~Gl~~G~LiiiaarPgmGKTa-fal~ia~~~a 251 (472)
T PRK06321 210 PTHF--IDLDKMINGFSPSNLMILAARPAMGKTA-LALNIAENFC 251 (472)
T ss_pred ccCc--HHHHHHhcCCCCCcEEEEEeCCCCChHH-HHHHHHHHHH
Confidence 4554 334455544 455 556999999994 5666666653
No 472
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=81.75 E-value=18 Score=41.21 Aligned_cols=52 Identities=13% Similarity=-0.092 Sum_probs=36.3
Q ss_pred HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 152 SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 152 ip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+-..+..+-.++.+|-|.|||.+-.+-+...+... +..++|.+|...-+.++
T Consensus 181 ~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~--------Gi~IlvTAH~~~ts~ev 232 (752)
T PHA03333 181 IFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL--------EIDIVVQAQRKTMCLTL 232 (752)
T ss_pred HHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc--------CCeEEEECCChhhHHHH
Confidence 33445567888999999999987665544333211 66899999977766665
No 473
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=81.41 E-value=1 Score=50.63 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.++++.||||||||..+++|-+-.. +..+||+=|.-|+...
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-----------~gS~VV~DpKgE~~~~ 252 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-----------GGPLVCLDPSTEVAPM 252 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-----------CCCEEEEEChHHHHHH
Confidence 5899999999999999999975332 2235666666666543
No 474
>PRK08840 replicative DNA helicase; Provisional
Probab=81.32 E-value=7.9 Score=42.11 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=16.9
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.=+|+.|.||.|||. |.+-+..++.
T Consensus 218 ~LiviaarPg~GKTa-falnia~~~a 242 (464)
T PRK08840 218 DLIIVAARPSMGKTT-FAMNLCENAA 242 (464)
T ss_pred ceEEEEeCCCCchHH-HHHHHHHHHH
Confidence 445556999999995 5555555543
No 475
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=81.28 E-value=12 Score=38.60 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=52.1
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-------------CCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCc
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-------------GDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGV 226 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~-------------~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~ 226 (494)
-.+++||.|+|||.... -+.+.++...+... ....|-..++.|.. .++ +-..+.+++..-..
T Consensus 30 a~Lf~G~~G~gk~~~a~-~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~---~~i-~id~ir~l~~~~~~ 104 (329)
T PRK08058 30 AYLFEGAKGTGKKATAL-WLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG---QSI-KKDQIRYLKEEFSK 104 (329)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc---ccC-CHHHHHHHHHHHhh
Confidence 45999999999985433 34455443221100 11245566776642 111 11223333321110
Q ss_pred ceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 227 KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.-....-+++|+||||+|-... ...+.++++.-+....+|+ .++
T Consensus 105 -~~~~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il-~t~ 148 (329)
T PRK08058 105 -SGVESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAIL-LTE 148 (329)
T ss_pred -CCcccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEE-EeC
Confidence 0124567899999999987532 2234444444333444444 444
No 476
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.27 E-value=2.3 Score=39.30 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=33.5
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
..+-+++++||.-.-+|......+..++..+.....+++++.--+..+.
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 3466899999999999988888888888877543344444444333333
No 477
>PRK05636 replicative DNA helicase; Provisional
Probab=81.25 E-value=6.2 Score=43.37 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc---cchhHHHhh
Q 042373 159 LDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA---PTGELVRQQ 211 (494)
Q Consensus 159 rdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~---PTreLa~Qi 211 (494)
.++ ++.|.||+|||. |.+-+..++..+. +..++|++ +..+|+..+
T Consensus 265 G~Liiiaarpg~GKT~-~al~~a~~~a~~~-------g~~v~~fSlEMs~~ql~~R~ 313 (505)
T PRK05636 265 GQMIIVAARPGVGKST-LALDFMRSASIKH-------NKASVIFSLEMSKSEIVMRL 313 (505)
T ss_pred CceEEEEeCCCCCHHH-HHHHHHHHHHHhC-------CCeEEEEEeeCCHHHHHHHH
Confidence 455 567999999995 4444554443211 33456663 445555443
No 478
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=81.23 E-value=11 Score=35.66 Aligned_cols=52 Identities=21% Similarity=0.410 Sum_probs=42.1
Q ss_pred cceEEEEEcccchhcccCC--hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 232 TRVTYLVLDEADRMFDMGF--EPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf--~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
..+++|||||+-..++.|+ .+.|..+++..|...-+|+..-..|+++..+|.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 5689999999999998886 456777788777777888888888988877764
No 479
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.13 E-value=8.4 Score=43.21 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=62.2
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCC
Q 042373 113 EKCAPKPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPV 189 (494)
Q Consensus 113 g~~~P~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~ 189 (494)
...++.|-.+|++.|=-+.+...|+.. ..+.|-.+..-. +---|-|++.+|.|+|||+.+- .+...
T Consensus 423 e~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lAk-----alAne--- 491 (693)
T KOG0730|consen 423 EILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLAK-----ALANE--- 491 (693)
T ss_pred heeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHHH-----HHhhh---
Confidence 344667788999998556666665532 122222111111 1123789999999999997442 11111
Q ss_pred CCCCCCCeEEEEccchhHHHhh-hhhhHHH-HHHHhcCcceecccceEEEEEcccchhcc
Q 042373 190 VPGDDSPVGLVMAPTGELVRQQ-VRRGRMI-DLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 190 ~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~-dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
...-++-++-=||-.-. +--++.+ +++.+.. ... -+.+.|||+|.+.-
T Consensus 492 -----~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR----~~a-P~IiFfDEiDsi~~ 541 (693)
T KOG0730|consen 492 -----AGMNFLSVKGPELFSKYVGESERAIREVFRKAR----QVA-PCIIFFDEIDALAG 541 (693)
T ss_pred -----hcCCeeeccCHHHHHHhcCchHHHHHHHHHHHh----hcC-CeEEehhhHHhHhh
Confidence 11234555555665544 2333333 3333321 122 27899999998874
No 480
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.06 E-value=2.9 Score=39.35 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=31.2
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCC-cEEEecCCCChHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR-QAVLFSPTFPPRVE 279 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~-Q~ilfSAT~~~~v~ 279 (494)
+.+-+++++||--.-+|......+..++..+.... .+++++.--...+.
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 34557999999988888777777777776654332 45555544333333
No 481
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.01 E-value=1.5 Score=44.07 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=30.3
Q ss_pred CCCCCcccCCCCHHHHHH-HHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHH
Q 042373 118 KPIKTWRQTGLTTKILET-FSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRH 182 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~-l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~ 182 (494)
..|-+|++|+||+.+.+. +.+.| =+|++++|||||+... ..|+.+
T Consensus 105 ~~IPt~eeL~LPevlk~la~~kRG-------------------LviiVGaTGSGKSTtm-AaMi~y 150 (375)
T COG5008 105 TKIPTFEELKLPEVLKDLALAKRG-------------------LVIIVGATGSGKSTTM-AAMIGY 150 (375)
T ss_pred ccCCcHHhcCCcHHHHHhhcccCc-------------------eEEEECCCCCCchhhH-HHHhcc
Confidence 346789999999876653 22233 2788899999999753 345444
No 482
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.84 E-value=2.4 Score=38.40 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=31.7
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPR 277 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~ 277 (494)
...-.++++||...=+|......+..++..+....++++++.--...
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 142 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 34568999999998888777777777777664433455555443333
No 483
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=80.80 E-value=0.69 Score=44.50 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=11.6
Q ss_pred EEEEcCCCCCchh
Q 042373 161 SVAITETGSGKTL 173 (494)
Q Consensus 161 vi~~a~TGSGKTl 173 (494)
+++.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4789999999997
No 484
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=80.72 E-value=2.2 Score=39.50 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=29.6
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+.+-+++++||.-.-+|......+..++..+.....+++++.
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 153 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 456789999999888888777788777777644333444443
No 485
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=80.52 E-value=3.1 Score=49.06 Aligned_cols=138 Identities=15% Similarity=0.139 Sum_probs=70.0
Q ss_pred CCCcccCCCCHHHHHHHHhCCCC---CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhH--HHHHHHHHcCCCCCCCCC
Q 042373 120 IKTWRQTGLTTKILETFSKLNHE---NPVAIQAPASALIISGLDSVAITETGSGKTLAFL--LPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~---~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafl--lpil~~l~~~~~~~~~~~ 194 (494)
...|+++|.-..+.+.|+++-.. .|.-.|.- .|.--|-++.++|.|||||+..- .+-+.+-..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~---~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~--------- 328 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF---NITPPRGVLFHGPPGTGKTLMARALAAACSRGNR--------- 328 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc---ccCCCcceeecCCCCCchhHHHHhhhhhhccccc---------
Confidence 45688888777777778775321 11111111 12224789999999999997322 111111100
Q ss_pred CCeEEEEccc-hhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC--ChhH--------HHHHHHhhcC
Q 042373 195 SPVGLVMAPT-GELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG--FEPQ--------ITRIVQNIRP 263 (494)
Q Consensus 195 ~p~aLIl~PT-reLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~~~--------i~~Il~~l~~ 263 (494)
..+.++--- --|-.-++...|=+.+|-... .-.....+.+||+|-+.-.- -.++ +-.++.-+..
T Consensus 329 -kisffmrkgaD~lskwvgEaERqlrllFeeA----~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds 403 (1080)
T KOG0732|consen 329 -KISFFMRKGADCLSKWVGEAERQLRLLFEEA----QKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS 403 (1080)
T ss_pred -ccchhhhcCchhhccccCcHHHHHHHHHHHH----hccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC
Confidence 000000000 001112245555445554322 12355688899999554321 1222 2223344456
Q ss_pred CCcEEEecCCC
Q 042373 264 DRQAVLFSPTF 274 (494)
Q Consensus 264 ~~Q~ilfSAT~ 274 (494)
.-|+++.+||.
T Consensus 404 RgqVvvigATn 414 (1080)
T KOG0732|consen 404 RGQVVVIGATN 414 (1080)
T ss_pred CCceEEEcccC
Confidence 78999999994
No 486
>PRK06904 replicative DNA helicase; Validated
Probab=80.51 E-value=11 Score=41.20 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=17.6
Q ss_pred CCE-EEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDS-VAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdv-i~~a~TGSGKTlafllpil~~l~ 184 (494)
.++ |+.|.||.|||. |.+-+..++.
T Consensus 221 G~LiiIaarPg~GKTa-falnia~~~a 246 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAA 246 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHH
Confidence 444 556999999995 6666666553
No 487
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=80.48 E-value=5.3 Score=45.09 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=71.2
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------hhhhHHHHHHHh
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------VRRGRMIDLLCK 223 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------~TPgrl~dll~~ 223 (494)
..+..|-.++..|--.|||..-. +++..++...+ |-.+++.+|.+.-+..+ -.|+.+.+++..
T Consensus 250 ~~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~~------Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG 322 (738)
T PHA03368 250 RHFRQRATVFLVPRRHGKTWFLV-PLIALALATFR------GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG 322 (738)
T ss_pred HHhhccceEEEecccCCchhhHH-HHHHHHHHhCC------CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC
Confidence 44456778899999999998555 77776654321 77899999998888776 122333333211
Q ss_pred cCc---------ceecc-----------cceEEEEEcccchhcccCChhHHHHHHHhhc-CCCcEEEecCCCCh
Q 042373 224 NGV---------KITNL-----------TRVTYLVLDEADRMFDMGFEPQITRIVQNIR-PDRQAVLFSPTFPP 276 (494)
Q Consensus 224 ~~~---------~~~~l-----------~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~ 276 (494)
... ..+.+ ...+++|+|||+-+-+. .+..|+-.+. .+.++|++|.|.+.
T Consensus 323 e~I~i~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 323 ETISFSFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred cEEEEEecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCCC
Confidence 100 00111 14789999999987753 4444444332 48899999998654
No 488
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=80.34 E-value=1.1 Score=50.51 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.++++.|+||||||..+++|-+-.. +..++|+=|-.|+...
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~-----------~gS~VV~DpKgEl~~~ 265 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW-----------GGPLVVLDPSTEVAPM 265 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC-----------CCCEEEEeCcHHHHHH
Confidence 5899999999999999999986422 2346666677777654
No 489
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=80.29 E-value=4.7 Score=41.74 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=42.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh----HHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE----LVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre----La~Qi------------~TPgrl~dll 221 (494)
|+=+.+.+|+|||||... +.++...... +..++++..-.. .+.+. .+...+..++
T Consensus 55 G~iteI~Gp~GsGKTtLa-l~~~~~~~~~--------g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 55 GRIIEIYGPESSGKTTLA-LHAIAEAQKL--------GGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHHc--------CCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 567889999999999644 4444443321 456777755322 22222 1223333333
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.. .+.-..+++||+|=+-.++
T Consensus 126 ~~----li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 126 DS----LVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred HH----HHhccCCCEEEEcchHhhc
Confidence 21 1122357889999877665
No 490
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=80.26 E-value=5.6 Score=38.30 Aligned_cols=17 Identities=47% Similarity=0.489 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
|.-+++.+++|+|||..
T Consensus 16 g~~~li~G~~G~GKt~~ 32 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTF 32 (224)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56788899999999863
No 491
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=80.14 E-value=8.1 Score=37.10 Aligned_cols=86 Identities=17% Similarity=0.059 Sum_probs=46.6
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH---HHhh-------------hhhhHHHHHHHh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL---VRQQ-------------VRRGRMIDLLCK 223 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL---a~Qi-------------~TPgrl~dll~~ 223 (494)
=.++++|-.||||...+--+-+.... |-++++..|-..- ..-+ -.+..+.+.+..
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~---------g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~ 76 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEA---------GMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAA 76 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHc---------CCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHh
Confidence 35788999999998544433333222 5567777764221 1111 233455666654
Q ss_pred cCcceecccceEEEEEcccchhcccCChhHHHHHHH
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ 259 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~ 259 (494)
... ...+.+|.+|||+-+- .....++..+..
T Consensus 77 ~~~----~~~~~~v~IDEaQF~~-~~~v~~l~~lad 107 (201)
T COG1435 77 LHE----KPPVDCVLIDEAQFFD-EELVYVLNELAD 107 (201)
T ss_pred ccc----CCCcCEEEEehhHhCC-HHHHHHHHHHHh
Confidence 321 1227899999998443 222333444444
No 492
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=80.03 E-value=5 Score=41.20 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=26.2
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
.++.|||||||+- +|+.++......+. .-.+++|+|+...
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P~--PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQPP--PETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccCC--CCceEEECCCCCC
Confidence 3567999999984 56666554433332 2358889998543
No 493
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=79.96 E-value=2.9 Score=44.70 Aligned_cols=20 Identities=45% Similarity=0.489 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCCCchhhh
Q 042373 156 ISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlaf 175 (494)
+...++++.+|||+|||...
T Consensus 114 ~~~~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 114 LSKSNILLIGPTGSGKTLLA 133 (413)
T ss_pred cCCceEEEECCCCcCHHHHH
Confidence 34578999999999999743
No 494
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=79.88 E-value=7.7 Score=41.28 Aligned_cols=142 Identities=11% Similarity=0.061 Sum_probs=72.9
Q ss_pred CChhHHHHHHHHHcCC-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHH
Q 042373 144 PVAIQAPASALIISGL-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLC 222 (494)
Q Consensus 144 ptpiQ~~aip~il~gr-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~ 222 (494)
...+..+.+..+-... -+++.||-++|||... ..+..... .. .+++.-.-....+......+..+..
T Consensus 22 ~~~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll-----~~l~~~~~------~~-~iy~~~~d~~~~~~~l~d~~~~~~~ 89 (398)
T COG1373 22 RRKLLPRLIKKLDLRPFIILILGPRQVGKTTLL-----KLLIKGLL------EE-IIYINFDDLRLDRIELLDLLRAYIE 89 (398)
T ss_pred HHhhhHHHHhhcccCCcEEEEECCccccHHHHH-----HHHHhhCC------cc-eEEEEecchhcchhhHHHHHHHHHH
Confidence 3345555555555555 5778899999999633 33332210 11 3333322222222211111111111
Q ss_pred hcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCccceeeccccccCCC
Q 042373 223 KNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLD 302 (494)
Q Consensus 223 ~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILVaTdv~~rGlD 302 (494)
.. ...-.++++||+|++-+| ...+..+...-+. .+++.+.+-+- ..--++|..+.|+.+
T Consensus 90 ~~------~~~~~yifLDEIq~v~~W--~~~lk~l~d~~~~--~v~itgsss~l-----------l~~~~~~~L~GR~~~ 148 (398)
T COG1373 90 LK------EREKSYIFLDEIQNVPDW--ERALKYLYDRGNL--DVLITGSSSSL-----------LSKEISESLAGRGKD 148 (398)
T ss_pred hh------ccCCceEEEecccCchhH--HHHHHHHHccccc--eEEEECCchhh-----------hccchhhhcCCCcee
Confidence 11 114479999999988764 5566666655433 34443333111 112346777788544
Q ss_pred CCCceEEEecCCCCCHhHHHhhhc
Q 042373 303 EKELELVINFDAPNDYEDYVHHCC 326 (494)
Q Consensus 303 i~~v~~VInyd~P~s~~~yvhR~G 326 (494)
+ .+ .|-|..+|++-.|
T Consensus 149 ~-----~l---~PlSF~Efl~~~~ 164 (398)
T COG1373 149 L-----EL---YPLSFREFLKLKG 164 (398)
T ss_pred E-----EE---CCCCHHHHHhhcc
Confidence 2 22 4999999988654
No 495
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.80 E-value=1.3 Score=41.20 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=34.5
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCC-CcEEEecCCCChHHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD-RQAVLFSPTFPPRVEI 280 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~-~Q~ilfSAT~~~~v~~ 280 (494)
+.+-+++++||--.=+|......+..++..+... ..+++++..-...+..
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 4566899999998888877777888877776544 3566666554444433
No 496
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=79.75 E-value=5.1 Score=44.35 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=27.7
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
+++=.++|||||-.=+|...+..+...+..+..++.+++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 345578999999888888777778777776655544443
No 497
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=79.60 E-value=1.1 Score=45.07 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=17.1
Q ss_pred HHcCCCEEEEcCCCCCchh
Q 042373 155 IISGLDSVAITETGSGKTL 173 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTl 173 (494)
+.+++.++++||+|+|||.
T Consensus 30 ~~~~~pvLl~G~~GtGKT~ 48 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTS 48 (272)
T ss_dssp HHCTEEEEEESSTTSSHHH
T ss_pred HHcCCcEEEECCCCCchhH
Confidence 4578999999999999997
No 498
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=79.40 E-value=19 Score=34.05 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=29.9
Q ss_pred ccceEEEEEcccchhcccCChhHHH-HHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQIT-RIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~-~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
+.+-+++++||.-.-++......+. .++..+.....+++++.-. ..+..++
T Consensus 106 ~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~ 157 (200)
T cd03280 106 ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY-GELKAYA 157 (200)
T ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHH
Confidence 3466899999998877765555553 4555554333344444433 4554444
No 499
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=79.30 E-value=6.5 Score=41.05 Aligned_cols=41 Identities=20% Similarity=0.040 Sum_probs=22.4
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
=+.+++++|||||...+--++...+ +...+..+..++||.-
T Consensus 128 ItEI~G~~GsGKTql~lqlav~~ql---p~~~gg~~~~vvyIdT 168 (344)
T PLN03187 128 ITEAFGEFRSGKTQLAHTLCVTTQL---PTEMGGGNGKVAYIDT 168 (344)
T ss_pred EEEEecCCCCChhHHHHHHHHHHhc---chhhCCCCceEEEEEc
Confidence 4568899999999644333332221 1111211347788764
No 500
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=79.28 E-value=4 Score=40.85 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=22.1
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhc
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIR 262 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~ 262 (494)
++-.++.+||--.-+|....-.+..++..+.
T Consensus 155 Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 155 QETPILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred cCCCEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 3556888888877777776666777777665
Done!