Query 042373
Match_columns 494
No_of_seqs 479 out of 2989
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.2E-53 4E-58 451.2 27.2 258 106-367 41-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.2E-46 7.4E-51 389.1 26.3 258 109-369 3-411 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.2E-43 7.6E-48 366.5 21.8 244 111-363 27-405 (410)
4 3fmp_B ATP-dependent RNA helic 100.0 1.3E-43 4.4E-48 377.5 15.7 245 109-361 77-467 (479)
5 3eiq_A Eukaryotic initiation f 100.0 9.6E-43 3.3E-47 360.9 21.7 247 112-367 31-413 (414)
6 3fht_A ATP-dependent RNA helic 100.0 4.1E-42 1.4E-46 355.5 25.4 239 116-362 20-401 (412)
7 3pey_A ATP-dependent RNA helic 100.0 5E-41 1.7E-45 344.5 25.4 242 118-368 2-386 (395)
8 1s2m_A Putative ATP-dependent 100.0 3.1E-41 1.1E-45 348.8 22.3 238 118-364 18-388 (400)
9 3sqw_A ATP-dependent RNA helic 100.0 1.4E-41 4.9E-46 371.0 20.7 235 118-356 14-413 (579)
10 3i5x_A ATP-dependent RNA helic 100.0 1.4E-41 4.9E-46 368.5 20.3 225 128-356 79-464 (563)
11 1fuu_A Yeast initiation factor 100.0 2.7E-41 9.4E-46 347.3 15.6 243 115-366 15-391 (394)
12 1hv8_A Putative ATP-dependent 100.0 1.8E-39 6.1E-44 329.7 23.8 231 120-360 5-364 (367)
13 1xti_A Probable ATP-dependent 100.0 1.2E-39 4.1E-44 335.1 21.2 234 121-363 8-380 (391)
14 2z0m_A 337AA long hypothetical 100.0 1.8E-38 6E-43 319.1 23.1 212 128-355 1-336 (337)
15 3fho_A ATP-dependent RNA helic 100.0 9.2E-38 3.2E-42 336.2 15.4 242 113-363 111-493 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 3.7E-37 1.3E-41 337.5 20.2 218 117-350 15-383 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2E-36 6.8E-41 327.3 18.6 216 120-351 1-353 (523)
18 3fe2_A Probable ATP-dependent 100.0 1.3E-35 4.6E-40 288.6 21.2 187 102-292 10-235 (242)
19 3oiy_A Reverse gyrase helicase 100.0 5.3E-36 1.8E-40 312.6 19.4 207 131-354 9-376 (414)
20 3l9o_A ATP-dependent RNA helic 100.0 2.4E-35 8.2E-40 342.8 13.6 145 120-276 161-333 (1108)
21 2whx_A Serine protease/ntpase/ 100.0 7E-37 2.4E-41 336.7 -1.6 227 126-363 155-503 (618)
22 3fmo_B ATP-dependent RNA helic 100.0 1.1E-33 3.7E-38 285.2 17.4 177 108-292 76-295 (300)
23 1tf5_A Preprotein translocase 100.0 5.4E-34 1.8E-38 317.3 15.7 171 81-275 21-287 (844)
24 2zj8_A DNA helicase, putative 100.0 4.4E-33 1.5E-37 311.4 22.2 209 122-342 2-388 (720)
25 3iuy_A Probable ATP-dependent 100.0 2.8E-33 9.7E-38 269.0 17.4 178 112-292 10-226 (228)
26 4ddu_A Reverse gyrase; topoiso 100.0 2.3E-33 7.9E-38 326.0 19.7 202 138-354 74-503 (1104)
27 3dkp_A Probable ATP-dependent 100.0 1.2E-32 4.1E-37 267.5 19.2 185 102-292 6-238 (245)
28 4a2p_A RIG-I, retinoic acid in 100.0 1.7E-32 5.9E-37 294.5 21.2 130 139-274 3-176 (556)
29 2va8_A SSO2462, SKI2-type heli 100.0 2.5E-32 8.7E-37 304.8 23.3 211 120-342 7-409 (715)
30 2p6r_A Afuhel308 helicase; pro 100.0 9.5E-33 3.3E-37 307.9 17.7 209 122-343 2-390 (702)
31 2jlq_A Serine protease subunit 100.0 4E-34 1.4E-38 303.7 5.3 210 140-364 1-337 (451)
32 3tbk_A RIG-I helicase domain; 100.0 5.4E-32 1.8E-36 289.9 21.1 127 143-275 4-175 (555)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 2.9E-32 1E-36 316.2 20.2 213 122-355 31-468 (1054)
34 1wrb_A DJVLGB; RNA helicase, D 100.0 3.9E-32 1.3E-36 265.4 15.2 185 106-293 6-238 (253)
35 2ykg_A Probable ATP-dependent 100.0 1.2E-31 4E-36 297.6 19.7 137 133-275 3-184 (696)
36 3bor_A Human initiation factor 100.0 1.4E-31 4.8E-36 259.6 16.3 174 110-292 19-232 (237)
37 2oxc_A Probable ATP-dependent 100.0 3E-31 1E-35 256.0 17.4 164 112-284 15-218 (230)
38 2wv9_A Flavivirin protease NS2 100.0 5.4E-34 1.9E-38 316.2 -3.6 218 135-362 202-557 (673)
39 1yks_A Genome polyprotein [con 100.0 5.8E-33 2E-37 294.0 4.2 200 154-363 4-324 (440)
40 2pl3_A Probable ATP-dependent 100.0 8.9E-31 3E-35 252.9 18.7 171 117-291 21-229 (236)
41 3ber_A Probable ATP-dependent 100.0 7.9E-31 2.7E-35 256.9 17.0 168 117-292 39-245 (249)
42 1qde_A EIF4A, translation init 100.0 1.2E-30 4.1E-35 249.5 17.8 171 113-292 6-214 (224)
43 4a2q_A RIG-I, retinoic acid in 100.0 3.2E-30 1.1E-34 291.5 24.4 132 138-275 243-418 (797)
44 1q0u_A Bstdead; DEAD protein, 100.0 5.6E-31 1.9E-35 251.7 15.2 157 119-284 2-201 (219)
45 1vec_A ATP-dependent RNA helic 100.0 2.4E-30 8.1E-35 244.0 18.4 155 121-284 3-197 (206)
46 3ly5_A ATP-dependent RNA helic 100.0 1.4E-30 4.7E-35 257.0 16.4 160 121-284 52-252 (262)
47 1nkt_A Preprotein translocase 100.0 6.4E-30 2.2E-34 284.6 23.3 127 138-276 107-316 (922)
48 2gxq_A Heat resistant RNA depe 100.0 5.7E-30 2E-34 241.3 18.4 166 121-292 1-203 (207)
49 2xgj_A ATP-dependent RNA helic 100.0 1.4E-29 4.7E-34 292.1 23.7 127 137-276 81-235 (1010)
50 2fsf_A Preprotein translocase 100.0 2.5E-30 8.4E-35 287.4 15.8 113 139-263 71-240 (853)
51 1t6n_A Probable ATP-dependent 100.0 1E-29 3.4E-34 242.7 15.9 165 111-284 4-210 (220)
52 4f92_B U5 small nuclear ribonu 100.0 2.3E-29 7.8E-34 302.5 21.3 211 128-348 911-1315(1724)
53 4gl2_A Interferon-induced heli 100.0 1.6E-29 5.4E-34 280.6 17.6 131 143-276 7-193 (699)
54 2z83_A Helicase/nucleoside tri 100.0 1.2E-30 4.2E-35 277.5 7.1 176 152-341 15-313 (459)
55 4a2w_A RIG-I, retinoic acid in 100.0 3.8E-29 1.3E-33 287.2 19.6 132 137-274 242-417 (936)
56 4a4z_A Antiviral helicase SKI2 100.0 8.1E-29 2.8E-33 285.5 20.8 125 138-275 35-189 (997)
57 3o8b_A HCV NS3 protease/helica 100.0 2.4E-30 8.2E-35 284.7 2.8 191 144-355 218-532 (666)
58 1gm5_A RECG; helicase, replica 100.0 1.7E-28 5.8E-33 275.7 17.1 200 130-344 356-700 (780)
59 1wp9_A ATP-dependent RNA helic 100.0 1.4E-27 4.8E-32 249.0 19.6 121 143-275 9-167 (494)
60 4f92_B U5 small nuclear ribonu 100.0 9.2E-28 3.1E-32 288.6 19.7 207 140-349 76-481 (1724)
61 2xau_A PRE-mRNA-splicing facto 99.9 4.4E-28 1.5E-32 272.9 14.5 213 117-343 68-445 (773)
62 2v6i_A RNA helicase; membrane, 99.9 8.7E-28 3E-32 253.7 11.5 168 157-338 1-288 (431)
63 3rc3_A ATP-dependent RNA helic 99.9 3.5E-27 1.2E-31 261.4 12.5 206 123-348 125-451 (677)
64 2eyq_A TRCF, transcription-rep 99.9 6.7E-26 2.3E-30 264.7 23.3 201 126-341 586-922 (1151)
65 2fwr_A DNA repair protein RAD2 99.9 7.6E-26 2.6E-30 239.9 19.9 176 143-341 93-454 (472)
66 2oca_A DAR protein, ATP-depend 99.9 3E-26 1E-30 245.3 10.4 180 142-339 112-453 (510)
67 3h1t_A Type I site-specific re 99.9 2.4E-24 8.4E-29 235.1 15.1 130 143-275 178-342 (590)
68 3llm_A ATP-dependent RNA helic 99.8 1.3E-20 4.3E-25 182.5 13.0 145 131-288 49-230 (235)
69 3dmq_A RNA polymerase-associat 99.8 4.6E-19 1.6E-23 204.2 19.2 125 142-274 152-316 (968)
70 3b6e_A Interferon-induced heli 99.8 5.6E-20 1.9E-24 173.2 9.5 132 139-273 29-216 (216)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 5.6E-19 1.9E-23 203.5 18.2 120 143-274 271-438 (1038)
72 1z63_A Helicase of the SNF2/RA 99.8 2.1E-18 7.3E-23 183.9 17.1 116 142-274 36-187 (500)
73 1c4o_A DNA nucleotide excision 99.8 1.3E-18 4.3E-23 193.1 12.9 67 285-351 487-560 (664)
74 2d7d_A Uvrabc system protein B 99.7 8.1E-18 2.8E-22 186.5 14.5 67 285-351 493-566 (661)
75 3jux_A Protein translocase sub 99.7 2.7E-17 9.1E-22 180.4 16.9 61 139-211 72-132 (822)
76 1rif_A DAR protein, DNA helica 99.7 5.9E-18 2E-22 167.8 8.6 119 142-278 112-266 (282)
77 2jgn_A DBX, DDX3, ATP-dependen 99.6 9.2E-16 3.1E-20 143.4 12.7 105 265-369 71-181 (185)
78 2p6n_A ATP-dependent RNA helic 99.6 1.6E-15 5.5E-20 142.6 14.0 84 285-368 102-189 (191)
79 3mwy_W Chromo domain-containin 99.6 4.3E-15 1.5E-19 168.0 17.8 54 288-341 626-684 (800)
80 1z3i_X Similar to RAD54-like; 99.6 6E-14 2.1E-18 155.0 23.1 53 289-341 471-528 (644)
81 2fz4_A DNA repair protein RAD2 99.6 5.3E-15 1.8E-19 143.6 11.6 113 142-277 92-231 (237)
82 2ipc_A Preprotein translocase 99.6 1.9E-15 6.5E-20 168.5 9.0 97 138-246 75-215 (997)
83 2rb4_A ATP-dependent RNA helic 99.6 4.5E-14 1.5E-18 130.2 16.3 95 267-361 61-167 (175)
84 2hjv_A ATP-dependent RNA helic 99.6 4.7E-14 1.6E-18 128.6 14.7 75 285-359 83-160 (163)
85 1fuk_A Eukaryotic initiation f 99.6 1.4E-14 4.8E-19 132.3 10.9 80 285-364 78-160 (165)
86 3eaq_A Heat resistant RNA depe 99.5 1E-13 3.5E-18 132.2 16.6 75 285-359 79-156 (212)
87 1t5i_A C_terminal domain of A 99.5 1.1E-13 3.8E-18 127.6 10.3 102 264-365 55-163 (172)
88 3i32_A Heat resistant RNA depe 99.5 5E-13 1.7E-17 134.5 14.2 107 252-358 39-152 (300)
89 2yjt_D ATP-dependent RNA helic 98.9 7.6E-13 2.6E-17 121.4 0.0 73 285-357 78-153 (170)
90 3crv_A XPD/RAD3 related DNA he 99.2 5.6E-11 1.9E-15 128.9 10.2 59 140-211 1-63 (551)
91 2vl7_A XPD; helicase, unknown 99.1 8.2E-11 2.8E-15 127.3 8.5 60 139-211 4-67 (540)
92 1w36_D RECD, exodeoxyribonucle 98.9 2.2E-09 7.5E-14 117.8 9.1 114 145-272 151-297 (608)
93 4a15_A XPD helicase, ATP-depen 98.6 2.2E-08 7.4E-13 110.1 6.4 62 143-212 3-68 (620)
94 1z5z_A Helicase of the SNF2/RA 98.6 5.2E-08 1.8E-12 96.3 8.3 77 265-341 138-224 (271)
95 3e1s_A Exodeoxyribonuclease V, 98.0 1.6E-05 5.4E-10 86.6 10.5 116 143-271 189-313 (574)
96 3upu_A ATP-dependent DNA helic 97.9 4.4E-05 1.5E-09 80.5 10.8 124 136-271 18-162 (459)
97 3ec2_A DNA replication protein 97.1 0.00063 2.1E-08 61.8 6.0 117 145-276 16-145 (180)
98 2kjq_A DNAA-related protein; s 96.6 0.0028 9.5E-08 56.4 6.1 76 157-261 35-110 (149)
99 4b3f_X DNA-binding protein smu 96.5 0.0067 2.3E-07 66.6 9.3 61 142-211 188-249 (646)
100 3h4m_A Proteasome-activating n 96.4 0.0037 1.3E-07 60.6 6.1 53 119-174 12-67 (285)
101 2p65_A Hypothetical protein PF 96.4 0.0091 3.1E-07 53.1 8.1 17 158-174 43-59 (187)
102 2w58_A DNAI, primosome compone 96.3 0.011 3.7E-07 54.3 8.4 103 159-278 55-163 (202)
103 2orw_A Thymidine kinase; TMTK, 96.2 0.01 3.5E-07 54.6 7.3 97 157-272 2-111 (184)
104 1jbk_A CLPB protein; beta barr 96.2 0.01 3.5E-07 52.8 7.2 83 158-247 43-129 (195)
105 2o0j_A Terminase, DNA packagin 96.1 0.04 1.4E-06 56.8 12.3 63 143-212 163-225 (385)
106 2gk6_A Regulator of nonsense t 96.0 0.012 4.1E-07 64.4 8.2 63 141-211 178-240 (624)
107 3syl_A Protein CBBX; photosynt 96.0 0.014 4.7E-07 57.2 8.0 76 158-247 67-144 (309)
108 1l8q_A Chromosomal replication 96.0 0.013 4.3E-07 58.2 7.6 74 158-247 37-112 (324)
109 3cf0_A Transitional endoplasmi 95.9 0.012 3.9E-07 58.2 7.0 110 119-247 10-122 (301)
110 2b8t_A Thymidine kinase; deoxy 95.8 0.022 7.7E-07 54.2 8.0 77 157-246 11-102 (223)
111 3eie_A Vacuolar protein sortin 95.7 0.0091 3.1E-07 59.5 5.3 105 119-247 13-124 (322)
112 1d2n_A N-ethylmaleimide-sensit 95.6 0.044 1.5E-06 52.8 9.5 72 159-247 65-138 (272)
113 2z4s_A Chromosomal replication 95.5 0.025 8.6E-07 59.1 8.0 101 158-272 130-235 (440)
114 3cpe_A Terminase, DNA packagin 95.5 0.09 3.1E-06 57.0 12.7 63 143-212 163-225 (592)
115 2wjy_A Regulator of nonsense t 95.5 0.024 8.3E-07 63.9 8.2 62 142-211 355-416 (800)
116 3te6_A Regulatory protein SIR3 95.4 0.09 3.1E-06 52.7 11.3 26 158-184 45-70 (318)
117 2qgz_A Helicase loader, putati 95.3 0.022 7.4E-07 56.7 6.5 103 158-277 152-261 (308)
118 2v1u_A Cell division control p 95.2 0.057 1.9E-06 53.9 9.3 18 157-174 43-60 (387)
119 3vkw_A Replicase large subunit 95.1 0.047 1.6E-06 57.3 8.5 37 161-211 164-200 (446)
120 2r2a_A Uncharacterized protein 95.1 0.021 7.1E-07 53.4 5.3 16 161-176 8-23 (199)
121 3bos_A Putative DNA replicatio 95.1 0.034 1.2E-06 51.5 6.8 68 157-247 51-118 (242)
122 2xzl_A ATP-dependent helicase 95.1 0.027 9.1E-07 63.6 7.0 63 141-211 358-420 (802)
123 4b4t_M 26S protease regulatory 95.1 0.021 7.1E-07 59.8 5.7 109 118-247 175-288 (434)
124 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.048 1.6E-06 54.5 8.2 50 119-174 7-61 (322)
125 1g5t_A COB(I)alamin adenosyltr 95.1 0.17 6E-06 47.1 11.3 115 159-283 29-172 (196)
126 3hu3_A Transitional endoplasmi 94.9 0.035 1.2E-06 58.9 7.1 72 158-247 238-311 (489)
127 2chg_A Replication factor C sm 94.9 0.048 1.6E-06 49.5 6.9 16 159-174 39-54 (226)
128 3u61_B DNA polymerase accessor 94.9 0.11 3.6E-06 51.3 9.9 116 121-269 23-141 (324)
129 3co5_A Putative two-component 94.7 0.081 2.8E-06 46.0 7.7 19 155-173 24-42 (143)
130 3n70_A Transport activator; si 94.6 0.068 2.3E-06 46.6 6.9 20 156-175 22-41 (145)
131 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.088 3E-06 49.8 8.2 51 121-174 3-55 (262)
132 2qby_A CDC6 homolog 1, cell di 94.5 0.086 3E-06 52.5 8.4 17 158-174 45-61 (386)
133 3vfd_A Spastin; ATPase, microt 94.3 0.065 2.2E-06 54.7 7.1 46 119-174 110-164 (389)
134 3lfu_A DNA helicase II; SF1 he 94.3 0.052 1.8E-06 58.9 6.5 63 142-211 8-70 (647)
135 1a5t_A Delta prime, HOLB; zinc 94.2 0.16 5.4E-06 50.8 9.5 97 144-247 3-122 (334)
136 1njg_A DNA polymerase III subu 94.0 0.19 6.5E-06 45.9 9.0 15 160-174 47-61 (250)
137 3d8b_A Fidgetin-like protein 1 94.0 0.076 2.6E-06 53.7 6.7 52 120-175 80-134 (357)
138 2zan_A Vacuolar protein sortin 93.9 0.03 1E-06 58.6 3.7 53 118-174 128-183 (444)
139 1sxj_E Activator 1 40 kDa subu 93.8 0.37 1.3E-05 47.8 11.3 40 232-272 133-172 (354)
140 4b4t_J 26S protease regulatory 93.8 0.077 2.6E-06 55.0 6.3 105 119-247 143-255 (405)
141 2zpa_A Uncharacterized protein 93.7 0.1 3.5E-06 57.4 7.5 102 143-274 175-288 (671)
142 3b9p_A CG5977-PA, isoform A; A 93.7 0.099 3.4E-06 50.8 6.8 52 119-174 16-70 (297)
143 3pfi_A Holliday junction ATP-d 93.7 0.16 5.4E-06 50.3 8.3 64 159-246 56-119 (338)
144 1ixz_A ATP-dependent metallopr 93.6 0.095 3.3E-06 49.8 6.3 51 118-173 10-64 (254)
145 1ofh_A ATP-dependent HSL prote 93.6 0.6 2E-05 45.0 12.2 18 157-174 49-66 (310)
146 2qp9_X Vacuolar protein sortin 93.6 0.13 4.6E-06 51.9 7.8 51 119-175 46-101 (355)
147 3kl4_A SRP54, signal recogniti 93.6 0.2 7E-06 52.3 9.2 53 232-284 178-233 (433)
148 4b4t_L 26S protease subunit RP 93.6 0.11 3.8E-06 54.4 7.1 109 118-247 175-288 (437)
149 1fnn_A CDC6P, cell division co 93.5 0.12 4.1E-06 51.7 7.1 16 160-175 46-61 (389)
150 4b4t_H 26S protease regulatory 93.4 0.19 6.3E-06 53.0 8.6 109 118-247 203-316 (467)
151 2qby_B CDC6 homolog 3, cell di 93.4 0.31 1.1E-05 48.7 10.0 18 158-175 45-62 (384)
152 3t15_A Ribulose bisphosphate c 93.2 0.072 2.5E-06 52.4 4.9 75 159-247 37-113 (293)
153 1lv7_A FTSH; alpha/beta domain 93.2 0.19 6.5E-06 47.8 7.7 53 119-174 7-61 (257)
154 1xx6_A Thymidine kinase; NESG, 93.1 0.23 7.8E-06 45.9 7.8 38 158-204 8-45 (191)
155 1w4r_A Thymidine kinase; type 93.1 0.24 8.3E-06 46.1 7.9 72 157-245 19-103 (195)
156 1sxj_A Activator 1 95 kDa subu 92.9 0.3 1E-05 51.9 9.4 17 159-175 78-94 (516)
157 2bjv_A PSP operon transcriptio 92.2 0.21 7.3E-06 47.6 6.6 17 157-173 28-44 (265)
158 4b4t_I 26S protease regulatory 92.1 0.19 6.7E-06 52.4 6.5 109 118-247 176-289 (437)
159 4b4t_K 26S protease regulatory 92.1 0.46 1.6E-05 49.5 9.3 109 118-247 166-279 (428)
160 3u4q_A ATP-dependent helicase/ 92.1 0.14 4.8E-06 60.4 6.0 64 143-211 10-73 (1232)
161 1iqp_A RFCS; clamp loader, ext 92.0 0.41 1.4E-05 46.5 8.5 99 160-270 48-146 (327)
162 1sxj_D Activator 1 41 kDa subu 91.9 0.21 7.3E-06 49.3 6.3 39 232-271 132-170 (353)
163 3hws_A ATP-dependent CLP prote 91.8 0.52 1.8E-05 47.3 9.2 78 157-248 50-131 (363)
164 1uaa_A REP helicase, protein ( 91.8 0.13 4.4E-06 56.5 5.0 62 143-211 2-63 (673)
165 1pjr_A PCRA; DNA repair, DNA r 91.7 0.22 7.5E-06 55.3 6.8 63 142-211 10-72 (724)
166 1iy2_A ATP-dependent metallopr 91.3 0.26 9E-06 47.5 6.2 51 119-174 35-89 (278)
167 1sxj_C Activator 1 40 kDa subu 91.1 0.67 2.3E-05 46.0 9.0 38 232-270 109-146 (340)
168 3cf2_A TER ATPase, transitiona 90.9 0.47 1.6E-05 53.4 8.4 111 116-247 469-584 (806)
169 3cf2_A TER ATPase, transitiona 90.8 0.45 1.5E-05 53.5 8.1 71 159-247 239-311 (806)
170 3uk6_A RUVB-like 2; hexameric 90.8 0.51 1.8E-05 47.0 7.9 17 158-174 70-86 (368)
171 2j9r_A Thymidine kinase; TK1, 90.6 0.95 3.2E-05 42.7 9.0 39 158-205 28-66 (214)
172 2w0m_A SSO2452; RECA, SSPF, un 90.5 0.7 2.4E-05 42.3 8.0 19 157-175 22-40 (235)
173 1hqc_A RUVB; extended AAA-ATPa 90.4 0.38 1.3E-05 47.0 6.4 66 158-246 38-103 (324)
174 3pvs_A Replication-associated 90.4 0.37 1.2E-05 50.5 6.6 16 159-174 51-66 (447)
175 2ce7_A Cell division protein F 90.4 0.24 8.2E-06 52.4 5.1 107 120-247 12-122 (476)
176 1ypw_A Transitional endoplasmi 90.3 0.4 1.4E-05 53.9 7.2 74 157-248 237-312 (806)
177 2c9o_A RUVB-like 1; hexameric 90.1 0.68 2.3E-05 48.2 8.4 105 119-248 32-141 (456)
178 1tue_A Replication protein E1; 89.8 0.34 1.2E-05 45.6 5.2 51 130-183 28-82 (212)
179 2x8a_A Nuclear valosin-contain 89.8 0.22 7.5E-06 48.5 4.0 53 119-174 5-60 (274)
180 2q6t_A DNAB replication FORK h 89.8 0.87 3E-05 47.3 8.9 32 152-184 190-225 (444)
181 3e2i_A Thymidine kinase; Zn-bi 89.8 0.5 1.7E-05 44.7 6.3 85 158-258 28-125 (219)
182 3m6a_A ATP-dependent protease 89.8 0.31 1.1E-05 52.2 5.5 18 157-174 107-124 (543)
183 3dm5_A SRP54, signal recogniti 89.2 1.2 4.2E-05 46.5 9.4 51 233-283 182-233 (443)
184 4a1f_A DNAB helicase, replicat 89.1 0.71 2.4E-05 46.6 7.3 36 158-202 46-81 (338)
185 3cmu_A Protein RECA, recombina 88.9 0.77 2.6E-05 56.4 8.5 109 152-273 1415-1562(2050)
186 2orv_A Thymidine kinase; TP4A 88.9 1.5 5E-05 41.9 8.9 40 157-205 18-57 (234)
187 2chq_A Replication factor C sm 88.8 0.49 1.7E-05 45.8 5.7 49 121-183 14-62 (319)
188 2fna_A Conserved hypothetical 88.5 8.5 0.00029 37.2 14.7 35 235-270 139-176 (357)
189 1jr3_A DNA polymerase III subu 88.3 0.92 3.2E-05 45.0 7.5 16 160-175 40-55 (373)
190 1sxj_B Activator 1 37 kDa subu 88.3 0.35 1.2E-05 46.9 4.3 38 233-271 107-144 (323)
191 1xp8_A RECA protein, recombina 88.3 1.2 4.1E-05 45.3 8.4 76 158-246 74-165 (366)
192 2dhr_A FTSH; AAA+ protein, hex 88.2 0.98 3.3E-05 48.0 7.9 53 119-174 26-80 (499)
193 1um8_A ATP-dependent CLP prote 88.0 0.72 2.5E-05 46.5 6.5 17 158-174 72-88 (376)
194 1qvr_A CLPB protein; coiled co 87.9 1.6 5.6E-05 49.2 10.0 82 159-247 192-277 (854)
195 2ehv_A Hypothetical protein PH 87.7 0.59 2E-05 43.5 5.3 20 157-176 29-48 (251)
196 2qen_A Walker-type ATPase; unk 87.6 1.6 5.3E-05 42.6 8.5 17 157-173 30-46 (350)
197 1r6b_X CLPA protein; AAA+, N-t 87.4 0.84 2.9E-05 50.6 7.1 18 158-175 207-224 (758)
198 2r6a_A DNAB helicase, replicat 87.3 2 6.9E-05 44.6 9.6 33 151-184 192-228 (454)
199 1w5s_A Origin recognition comp 87.2 0.91 3.1E-05 45.6 6.7 17 158-174 50-68 (412)
200 2zr9_A Protein RECA, recombina 86.5 1.3 4.6E-05 44.5 7.5 76 158-246 61-152 (349)
201 1ojl_A Transcriptional regulat 86.1 0.57 2E-05 46.1 4.4 18 157-174 24-41 (304)
202 3pxi_A Negative regulator of g 85.8 1.5 5.1E-05 48.7 8.1 69 160-246 523-592 (758)
203 2gno_A DNA polymerase III, gam 85.5 1.9 6.5E-05 42.5 7.9 76 160-248 20-97 (305)
204 4fcw_A Chaperone protein CLPB; 85.4 1.5 5.2E-05 42.3 7.1 17 159-175 48-64 (311)
205 1e9r_A Conjugal transfer prote 84.3 0.8 2.8E-05 47.1 4.7 44 157-209 52-95 (437)
206 3cmu_A Protein RECA, recombina 84.2 1.9 6.5E-05 53.0 8.4 100 157-273 1080-1216(2050)
207 3hr8_A Protein RECA; alpha and 84.0 1.5 5.2E-05 44.4 6.5 77 158-247 61-153 (356)
208 2l8b_A Protein TRAI, DNA helic 83.9 2.3 7.7E-05 39.2 6.9 112 144-272 35-157 (189)
209 2px0_A Flagellar biosynthesis 82.6 5.8 0.0002 38.8 10.0 20 157-176 104-123 (296)
210 3e70_C DPA, signal recognition 82.6 4.4 0.00015 40.4 9.2 63 233-295 211-277 (328)
211 2cvh_A DNA repair and recombin 82.3 4.4 0.00015 36.6 8.4 19 158-176 20-38 (220)
212 3lda_A DNA repair protein RAD5 82.0 2.3 7.7E-05 43.8 6.9 18 158-175 178-195 (400)
213 2yhs_A FTSY, cell division pro 81.9 1.6 5.3E-05 46.4 5.7 53 232-284 374-433 (503)
214 2zts_A Putative uncharacterize 80.7 3.8 0.00013 37.8 7.5 17 158-174 30-46 (251)
215 1u94_A RECA protein, recombina 80.4 3.2 0.00011 41.9 7.3 76 158-246 63-154 (356)
216 1ypw_A Transitional endoplasmi 80.4 0.18 6.3E-06 56.7 -2.1 56 116-174 469-527 (806)
217 1nlf_A Regulatory protein REPA 79.6 5.2 0.00018 38.3 8.3 23 155-177 27-49 (279)
218 1qvr_A CLPB protein; coiled co 79.2 3.2 0.00011 46.8 7.5 16 160-175 590-605 (854)
219 1n0w_A DNA repair protein RAD5 78.9 2.9 9.8E-05 38.6 6.0 20 157-176 23-42 (243)
220 2eyu_A Twitching motility prot 77.2 1.1 3.7E-05 43.2 2.5 20 156-175 23-42 (261)
221 1in4_A RUVB, holliday junction 76.0 4.9 0.00017 39.7 7.1 16 159-174 52-67 (334)
222 1pzn_A RAD51, DNA repair and r 73.2 4.6 0.00016 40.5 6.1 26 151-176 119-149 (349)
223 3cmw_A Protein RECA, recombina 73.0 4.8 0.00016 48.8 7.0 77 158-247 34-126 (1706)
224 2vhj_A Ntpase P4, P4; non- hyd 72.0 2.2 7.6E-05 42.8 3.3 20 157-176 122-141 (331)
225 1r6b_X CLPA protein; AAA+, N-t 71.1 4.3 0.00015 44.9 5.8 16 160-175 490-505 (758)
226 4f4c_A Multidrug resistance pr 71.0 4 0.00014 48.4 5.8 26 157-184 1104-1129(1321)
227 4ag6_A VIRB4 ATPase, type IV s 70.7 3.5 0.00012 41.7 4.6 42 157-207 34-75 (392)
228 2oap_1 GSPE-2, type II secreti 70.3 3.2 0.00011 44.0 4.3 39 133-173 236-275 (511)
229 3jvv_A Twitching mobility prot 69.5 3.1 0.00011 42.0 3.8 18 157-174 122-139 (356)
230 2vl7_A XPD; helicase, unknown 69.3 1.7 5.7E-05 46.4 1.8 28 289-316 430-463 (540)
231 2z43_A DNA repair and recombin 69.0 5.4 0.00019 39.3 5.5 18 158-175 107-124 (324)
232 1p9r_A General secretion pathw 69.0 5.7 0.0002 41.0 5.8 17 158-174 167-183 (418)
233 4f4c_A Multidrug resistance pr 68.4 8.8 0.0003 45.5 7.9 39 231-269 570-608 (1321)
234 1u0j_A DNA replication protein 68.0 6.8 0.00023 38.0 5.7 44 130-176 73-122 (267)
235 3nbx_X ATPase RAVA; AAA+ ATPas 67.2 4.8 0.00017 42.6 4.9 29 145-173 28-56 (500)
236 2i1q_A DNA repair and recombin 64.4 5.2 0.00018 39.2 4.2 18 158-175 98-115 (322)
237 2r44_A Uncharacterized protein 63.8 2.8 9.6E-05 41.1 2.1 22 153-174 41-62 (331)
238 2dr3_A UPF0273 protein PH0284; 62.9 7.1 0.00024 35.8 4.7 19 157-175 22-40 (247)
239 2gza_A Type IV secretion syste 62.7 3.6 0.00012 41.5 2.7 20 154-173 171-190 (361)
240 1v5w_A DMC1, meiotic recombina 62.5 5.1 0.00018 39.9 3.8 23 152-174 111-138 (343)
241 3bh0_A DNAB-like replicative h 62.0 7.1 0.00024 38.3 4.7 36 158-202 68-103 (315)
242 1kgd_A CASK, peripheral plasma 61.5 2.9 9.9E-05 37.3 1.6 19 156-174 3-21 (180)
243 1ex7_A Guanylate kinase; subst 60.5 4.4 0.00015 37.0 2.7 22 159-185 2-23 (186)
244 3nwn_A Kinesin-like protein KI 60.4 5.4 0.00018 40.4 3.5 25 151-175 96-122 (359)
245 3b85_A Phosphate starvation-in 59.9 9.1 0.00031 35.3 4.8 31 145-175 9-39 (208)
246 2ffh_A Protein (FFH); SRP54, s 59.6 33 0.0011 35.4 9.4 51 232-282 179-230 (425)
247 3iij_A Coilin-interacting nucl 59.5 2.3 7.9E-05 37.6 0.5 20 156-175 9-28 (180)
248 3cmw_A Protein RECA, recombina 58.9 12 0.0004 45.5 6.6 108 158-278 1431-1571(1706)
249 3nh6_A ATP-binding cassette SU 58.8 7.4 0.00025 38.4 4.1 17 157-173 79-95 (306)
250 1ls1_A Signal recognition part 58.4 31 0.0011 33.4 8.6 19 157-175 97-115 (295)
251 2pt7_A CAG-ALFA; ATPase, prote 57.7 5.1 0.00017 39.8 2.8 19 155-173 168-186 (330)
252 4etp_A Kinesin-like protein KA 57.4 6.8 0.00023 40.3 3.7 25 151-175 132-158 (403)
253 1bg2_A Kinesin; motor protein, 57.1 6.7 0.00023 39.1 3.5 25 151-175 69-95 (325)
254 1lvg_A Guanylate kinase, GMP k 57.1 4.4 0.00015 36.8 2.0 19 157-175 3-21 (198)
255 1qhx_A CPT, protein (chloramph 56.9 3.8 0.00013 35.9 1.5 18 157-174 2-19 (178)
256 4akg_A Glutathione S-transfera 56.7 8.5 0.00029 48.8 5.0 49 128-177 890-942 (2695)
257 2r62_A Cell division protease 56.6 4.1 0.00014 38.4 1.8 18 158-175 44-61 (268)
258 1ry6_A Internal kinesin; kines 56.3 6.3 0.00022 39.9 3.2 19 157-175 82-102 (360)
259 3vaa_A Shikimate kinase, SK; s 56.1 4.5 0.00015 36.5 1.9 19 157-175 24-42 (199)
260 3dc4_A Kinesin-like protein NO 55.8 6.7 0.00023 39.5 3.3 24 152-175 87-112 (344)
261 3b5x_A Lipid A export ATP-bind 55.6 13 0.00044 39.8 5.7 17 157-173 368-384 (582)
262 3bgw_A DNAB-like replicative h 55.5 9.7 0.00033 39.5 4.6 43 151-202 186-232 (444)
263 2y65_A Kinesin, kinesin heavy 55.5 7.4 0.00025 39.5 3.5 24 152-175 77-102 (365)
264 4a14_A Kinesin, kinesin-like p 55.4 7.4 0.00025 39.1 3.5 24 152-175 76-101 (344)
265 2j41_A Guanylate kinase; GMP, 55.3 4.2 0.00014 36.4 1.6 20 155-174 3-22 (207)
266 3trf_A Shikimate kinase, SK; a 55.2 4.7 0.00016 35.6 1.8 18 158-175 5-22 (185)
267 2nr8_A Kinesin-like protein KI 54.8 7.8 0.00027 39.2 3.6 25 151-175 95-121 (358)
268 3b6u_A Kinesin-like protein KI 54.5 7.7 0.00026 39.5 3.5 24 152-175 94-119 (372)
269 3io5_A Recombination and repai 54.3 24 0.00081 35.3 6.9 78 160-246 30-124 (333)
270 1v8k_A Kinesin-like protein KI 54.3 7.6 0.00026 40.0 3.5 24 152-175 147-172 (410)
271 3gbj_A KIF13B protein; kinesin 54.2 8 0.00027 39.0 3.6 25 151-175 84-110 (354)
272 2vvg_A Kinesin-2; motor protei 54.1 8 0.00027 39.0 3.5 24 152-175 82-107 (350)
273 1kht_A Adenylate kinase; phosp 54.0 5 0.00017 35.3 1.8 18 157-174 2-19 (192)
274 2h58_A Kinesin-like protein KI 53.9 8.3 0.00028 38.5 3.6 26 150-175 71-98 (330)
275 3b60_A Lipid A export ATP-bind 53.9 24 0.00084 37.6 7.6 17 157-173 368-384 (582)
276 1t5c_A CENP-E protein, centrom 53.6 8.4 0.00029 38.8 3.6 25 151-175 69-95 (349)
277 2j37_W Signal recognition part 53.6 66 0.0023 33.9 10.7 51 232-282 182-233 (504)
278 1x88_A Kinesin-like protein KI 53.5 7.6 0.00026 39.3 3.3 25 151-175 80-106 (359)
279 3tau_A Guanylate kinase, GMP k 53.4 5.3 0.00018 36.5 1.9 18 157-174 7-24 (208)
280 2zfi_A Kinesin-like protein KI 53.3 8.5 0.00029 39.0 3.6 25 151-175 81-107 (366)
281 3u06_A Protein claret segregat 52.9 8.5 0.00029 39.7 3.6 26 150-175 129-156 (412)
282 1goj_A Kinesin, kinesin heavy 52.5 7.9 0.00027 39.1 3.2 24 152-175 73-98 (355)
283 2wbe_C Bipolar kinesin KRP-130 52.4 8.1 0.00028 39.3 3.3 23 152-174 93-117 (373)
284 3lre_A Kinesin-like protein KI 52.4 7.9 0.00027 39.1 3.2 25 151-175 97-123 (355)
285 3qf4_B Uncharacterized ABC tra 52.0 17 0.0006 39.0 6.0 17 157-173 380-396 (598)
286 3cob_A Kinesin heavy chain-lik 51.9 7.4 0.00025 39.6 2.9 25 151-175 71-97 (369)
287 3lw7_A Adenylate kinase relate 51.7 5.5 0.00019 34.1 1.7 15 160-174 3-17 (179)
288 3t0q_A AGR253WP; kinesin, alph 51.5 6.7 0.00023 39.5 2.5 25 151-175 77-103 (349)
289 3exa_A TRNA delta(2)-isopenten 51.5 5.1 0.00018 40.0 1.6 17 158-174 3-19 (322)
290 3ney_A 55 kDa erythrocyte memb 51.1 5.4 0.00019 36.8 1.6 19 156-174 17-35 (197)
291 3qf4_A ABC transporter, ATP-bi 51.0 13 0.00046 39.8 4.9 17 157-173 368-384 (587)
292 3a8t_A Adenylate isopentenyltr 51.0 5.9 0.0002 39.8 1.9 16 159-174 41-56 (339)
293 3foz_A TRNA delta(2)-isopenten 50.9 5.9 0.0002 39.4 1.9 14 161-174 13-26 (316)
294 3tr0_A Guanylate kinase, GMP k 50.7 6.2 0.00021 35.3 1.9 18 157-174 6-23 (205)
295 1zp6_A Hypothetical protein AT 50.5 5.2 0.00018 35.4 1.4 17 157-173 8-24 (191)
296 3u4q_B ATP-dependent helicase/ 50.5 12 0.00042 43.5 4.8 39 162-206 5-43 (1166)
297 1kag_A SKI, shikimate kinase I 50.3 7 0.00024 33.9 2.1 16 158-173 4-19 (173)
298 1z6g_A Guanylate kinase; struc 50.1 7.1 0.00024 36.0 2.3 19 155-173 20-38 (218)
299 2heh_A KIF2C protein; kinesin, 50.0 9.2 0.00031 39.1 3.2 25 151-175 126-152 (387)
300 3a00_A Guanylate kinase, GMP k 49.8 7.1 0.00024 34.8 2.2 15 159-173 2-16 (186)
301 1f9v_A Kinesin-like protein KA 49.5 7.2 0.00025 39.2 2.3 25 151-175 76-102 (347)
302 2ze6_A Isopentenyl transferase 49.5 6.2 0.00021 37.4 1.7 14 161-174 4-17 (253)
303 2qor_A Guanylate kinase; phosp 49.1 7.5 0.00026 35.2 2.2 18 156-173 10-27 (204)
304 1y63_A LMAJ004144AAA protein; 49.1 6.7 0.00023 34.9 1.9 18 157-174 9-26 (184)
305 2owm_A Nckin3-434, related to 48.1 11 0.00038 39.2 3.6 24 152-175 129-154 (443)
306 3bfn_A Kinesin-like protein KI 47.9 8.9 0.0003 39.2 2.7 23 153-175 92-116 (388)
307 1znw_A Guanylate kinase, GMP k 47.7 7.5 0.00026 35.3 2.0 21 154-174 16-36 (207)
308 1g8p_A Magnesium-chelatase 38 47.7 5.7 0.00019 38.8 1.2 18 157-174 44-61 (350)
309 3vkg_A Dynein heavy chain, cyt 47.3 11 0.00039 48.3 4.1 48 128-176 873-924 (3245)
310 1nij_A Hypothetical protein YJ 47.1 16 0.00056 35.7 4.5 13 161-173 7-19 (318)
311 2ius_A DNA translocase FTSK; n 46.7 18 0.00063 38.3 5.0 20 157-176 166-185 (512)
312 2ewv_A Twitching motility prot 46.4 7.9 0.00027 39.1 2.1 20 156-175 134-153 (372)
313 1tf7_A KAIC; homohexamer, hexa 46.3 44 0.0015 35.0 8.0 19 157-175 280-298 (525)
314 4eun_A Thermoresistant glucoki 46.3 8 0.00027 34.8 1.9 18 157-174 28-45 (200)
315 2qmh_A HPR kinase/phosphorylas 46.0 7.7 0.00026 36.1 1.8 17 157-173 33-49 (205)
316 4gp7_A Metallophosphoesterase; 46.0 6.8 0.00023 34.5 1.4 20 157-176 8-27 (171)
317 1rj9_A FTSY, signal recognitio 45.9 18 0.00062 35.4 4.6 26 158-185 102-127 (304)
318 3nwj_A ATSK2; P loop, shikimat 45.7 9.9 0.00034 36.2 2.5 21 154-174 44-64 (250)
319 1knq_A Gluconate kinase; ALFA/ 45.5 6.7 0.00023 34.3 1.2 18 157-174 7-24 (175)
320 3kb2_A SPBC2 prophage-derived 45.3 8.1 0.00028 33.2 1.7 15 160-174 3-17 (173)
321 2rep_A Kinesin-like protein KI 45.3 10 0.00034 38.7 2.6 25 151-175 107-133 (376)
322 1ly1_A Polynucleotide kinase; 44.8 8.4 0.00029 33.4 1.7 15 160-174 4-18 (181)
323 1s96_A Guanylate kinase, GMP k 44.1 9 0.00031 35.6 1.9 20 155-174 13-32 (219)
324 3cm0_A Adenylate kinase; ATP-b 43.7 6.6 0.00023 34.5 0.9 18 157-174 3-20 (186)
325 3kta_A Chromosome segregation 43.7 8.8 0.0003 33.7 1.7 15 160-174 28-42 (182)
326 1tev_A UMP-CMP kinase; ploop, 43.4 7.9 0.00027 34.0 1.4 19 157-175 2-20 (196)
327 2ipc_A Preprotein translocase 43.3 23 0.00078 40.3 5.2 35 308-342 662-699 (997)
328 1xjc_A MOBB protein homolog; s 42.5 23 0.00079 31.6 4.3 23 161-184 7-29 (169)
329 1f2t_A RAD50 ABC-ATPase; DNA d 42.2 9.7 0.00033 33.0 1.7 14 161-174 26-39 (149)
330 3crm_A TRNA delta(2)-isopenten 42.0 9.7 0.00033 37.9 1.9 15 160-174 7-21 (323)
331 3qf7_A RAD50; ABC-ATPase, ATPa 41.7 9.3 0.00032 38.4 1.7 16 160-175 25-40 (365)
332 3lnc_A Guanylate kinase, GMP k 41.7 9 0.00031 35.3 1.5 18 157-174 26-43 (231)
333 3c8u_A Fructokinase; YP_612366 41.4 15 0.00051 33.3 3.0 16 158-173 22-37 (208)
334 2bdt_A BH3686; alpha-beta prot 41.1 10 0.00035 33.5 1.8 16 159-174 3-18 (189)
335 1cr0_A DNA primase/helicase; R 40.9 26 0.0009 33.4 4.8 19 157-175 34-52 (296)
336 4h1g_A Maltose binding protein 40.7 16 0.00054 40.2 3.5 26 150-175 453-480 (715)
337 3k1j_A LON protease, ATP-depen 40.2 17 0.00057 39.1 3.6 22 153-174 55-76 (604)
338 2xxa_A Signal recognition part 40.1 95 0.0033 31.8 9.2 18 159-176 101-118 (433)
339 3pxg_A Negative regulator of g 40.0 14 0.00049 38.3 2.9 18 158-175 201-218 (468)
340 1q57_A DNA primase/helicase; d 39.9 17 0.00058 37.9 3.5 37 158-202 242-278 (503)
341 3eph_A TRNA isopentenyltransfe 39.9 11 0.00037 38.9 1.9 15 161-175 5-19 (409)
342 3d3q_A TRNA delta(2)-isopenten 39.4 11 0.00039 37.7 1.9 15 160-174 9-23 (340)
343 1ye8_A Protein THEP1, hypothet 38.8 12 0.0004 33.6 1.7 16 160-175 2-17 (178)
344 2v9p_A Replication protein E1; 38.5 18 0.00063 35.5 3.3 26 157-184 125-150 (305)
345 3t61_A Gluconokinase; PSI-biol 38.3 12 0.00041 33.5 1.7 17 159-175 19-35 (202)
346 2c95_A Adenylate kinase 1; tra 38.3 12 0.00042 32.9 1.8 18 157-174 8-25 (196)
347 3b9q_A Chloroplast SRP recepto 38.1 20 0.00067 35.1 3.4 26 157-184 99-124 (302)
348 1m7g_A Adenylylsulfate kinase; 38.0 12 0.00043 33.8 1.8 31 144-175 12-42 (211)
349 3auy_A DNA double-strand break 37.8 12 0.0004 37.6 1.7 15 161-175 28-42 (371)
350 2iut_A DNA translocase FTSK; n 37.7 30 0.001 37.2 4.9 26 158-184 214-239 (574)
351 3kta_B Chromosome segregation 37.6 18 0.00062 32.3 2.8 41 232-272 85-125 (173)
352 3uie_A Adenylyl-sulfate kinase 37.4 11 0.00039 33.8 1.5 19 157-175 24-42 (200)
353 2rhm_A Putative kinase; P-loop 37.3 11 0.00039 33.1 1.4 17 158-174 5-21 (193)
354 2bwj_A Adenylate kinase 5; pho 37.1 14 0.00047 32.6 2.0 18 157-174 11-28 (199)
355 3f9v_A Minichromosome maintena 37.1 12 0.00041 40.3 1.8 14 160-173 329-342 (595)
356 3asz_A Uridine kinase; cytidin 36.9 13 0.00044 33.4 1.7 17 158-174 6-22 (211)
357 1gvn_B Zeta; postsegregational 36.2 14 0.00047 35.8 1.9 16 159-174 34-49 (287)
358 2r8r_A Sensor protein; KDPD, P 36.1 32 0.0011 32.4 4.4 20 158-177 5-25 (228)
359 3g5u_A MCG1178, multidrug resi 35.9 31 0.0011 40.6 5.2 38 232-269 543-580 (1284)
360 1np6_A Molybdopterin-guanine d 35.8 21 0.00073 31.9 3.0 23 160-183 8-30 (174)
361 2v54_A DTMP kinase, thymidylat 35.6 15 0.00051 32.7 1.9 18 157-174 3-20 (204)
362 3tif_A Uncharacterized ABC tra 35.5 15 0.0005 34.5 1.9 17 157-173 30-46 (235)
363 4a74_A DNA repair and recombin 35.1 14 0.00049 33.3 1.7 18 157-174 24-41 (231)
364 4akg_A Glutathione S-transfera 34.8 14 0.00048 46.9 2.1 20 155-174 1264-1283(2695)
365 1g41_A Heat shock protein HSLU 34.6 16 0.00056 38.0 2.2 17 158-174 50-66 (444)
366 2plr_A DTMP kinase, probable t 34.6 12 0.0004 33.4 1.0 18 157-174 3-20 (213)
367 1via_A Shikimate kinase; struc 34.2 16 0.00056 31.7 1.9 16 159-174 5-20 (175)
368 2pez_A Bifunctional 3'-phospho 34.1 14 0.00048 32.4 1.4 18 157-174 4-21 (179)
369 3pxi_A Negative regulator of g 34.0 22 0.00075 39.2 3.3 18 158-175 201-218 (758)
370 1qf9_A UMP/CMP kinase, protein 34.0 15 0.00052 32.0 1.7 15 160-174 8-22 (194)
371 1cke_A CK, MSSA, protein (cyti 34.0 15 0.00052 33.2 1.7 16 159-174 6-21 (227)
372 3fb4_A Adenylate kinase; psych 33.8 15 0.00052 33.1 1.7 15 161-175 3-17 (216)
373 1zuh_A Shikimate kinase; alpha 33.7 16 0.00053 31.6 1.7 17 159-175 8-24 (168)
374 1nks_A Adenylate kinase; therm 33.6 15 0.00053 32.0 1.7 15 160-174 3-17 (194)
375 2vli_A Antibiotic resistance p 33.3 15 0.00052 32.0 1.5 19 157-175 4-22 (183)
376 1zd8_A GTP:AMP phosphotransfer 33.2 16 0.00056 33.4 1.8 17 158-174 7-23 (227)
377 2iyv_A Shikimate kinase, SK; t 33.1 19 0.00064 31.5 2.1 16 159-174 3-18 (184)
378 1vma_A Cell division protein F 33.1 29 0.001 34.0 3.7 18 158-175 104-121 (306)
379 1zak_A Adenylate kinase; ATP:A 33.1 18 0.00063 32.8 2.1 18 158-175 5-22 (222)
380 1e6c_A Shikimate kinase; phosp 32.9 18 0.00061 31.1 1.9 16 159-174 3-18 (173)
381 1ak2_A Adenylate kinase isoenz 32.9 15 0.00052 33.9 1.5 18 157-174 15-32 (233)
382 3qks_A DNA double-strand break 32.9 16 0.00056 33.2 1.7 16 160-175 25-40 (203)
383 1aky_A Adenylate kinase; ATP:A 32.8 17 0.00059 33.0 1.9 17 158-174 4-20 (220)
384 2if2_A Dephospho-COA kinase; a 32.7 17 0.00057 32.5 1.7 15 160-174 3-17 (204)
385 3dl0_A Adenylate kinase; phosp 32.3 17 0.00057 32.8 1.7 15 160-174 2-16 (216)
386 2og2_A Putative signal recogni 32.2 27 0.00092 35.1 3.3 26 157-184 156-181 (359)
387 2bbw_A Adenylate kinase 4, AK4 32.0 17 0.00058 33.8 1.7 17 158-174 27-43 (246)
388 2qt1_A Nicotinamide riboside k 32.0 17 0.00059 32.6 1.7 17 157-173 20-36 (207)
389 2i3b_A HCR-ntpase, human cance 31.9 22 0.00076 32.1 2.4 29 231-259 103-133 (189)
390 2yvu_A Probable adenylyl-sulfa 31.8 16 0.00055 32.2 1.4 19 157-175 12-30 (186)
391 1ukz_A Uridylate kinase; trans 31.2 18 0.00062 32.2 1.7 16 159-174 16-31 (203)
392 2cbz_A Multidrug resistance-as 31.1 19 0.00066 33.7 1.9 17 157-173 30-46 (237)
393 2cdn_A Adenylate kinase; phosp 30.9 20 0.00067 32.0 1.9 16 159-174 21-36 (201)
394 1jjv_A Dephospho-COA kinase; P 30.9 19 0.00063 32.3 1.7 14 161-174 5-18 (206)
395 3tqc_A Pantothenate kinase; bi 30.8 78 0.0027 31.2 6.4 23 161-185 95-117 (321)
396 2wwf_A Thymidilate kinase, put 30.7 19 0.00066 32.1 1.8 19 157-175 9-27 (212)
397 3g5u_A MCG1178, multidrug resi 30.6 37 0.0013 40.0 4.6 29 233-261 1189-1217(1284)
398 1sgw_A Putative ABC transporte 30.4 22 0.00076 32.9 2.2 17 157-173 34-50 (214)
399 3qkt_A DNA double-strand break 30.3 18 0.00063 35.6 1.7 15 161-175 26-40 (339)
400 1nn5_A Similar to deoxythymidy 29.9 21 0.00071 31.9 1.9 19 157-175 8-26 (215)
401 2pt5_A Shikimate kinase, SK; a 29.8 20 0.00068 30.7 1.7 15 160-174 2-16 (168)
402 3vkg_A Dynein heavy chain, cyt 29.6 20 0.00069 46.2 2.3 20 154-173 1300-1319(3245)
403 2jaq_A Deoxyguanosine kinase; 29.6 20 0.00068 31.6 1.7 14 161-174 3-16 (205)
404 2pze_A Cystic fibrosis transme 29.4 21 0.00073 33.1 1.9 17 157-173 33-49 (229)
405 3hjh_A Transcription-repair-co 29.3 35 0.0012 35.8 3.7 43 157-211 13-55 (483)
406 2pbr_A DTMP kinase, thymidylat 29.2 20 0.0007 31.2 1.7 14 161-174 3-16 (195)
407 1rz3_A Hypothetical protein rb 29.0 21 0.00071 32.1 1.7 17 159-175 23-39 (201)
408 2pcj_A ABC transporter, lipopr 28.7 22 0.00076 32.9 1.9 17 157-173 29-45 (224)
409 1g6h_A High-affinity branched- 28.6 22 0.00076 33.6 1.9 17 157-173 32-48 (257)
410 1zu4_A FTSY; GTPase, signal re 28.6 39 0.0013 33.3 3.7 18 158-175 105-122 (320)
411 1uf9_A TT1252 protein; P-loop, 28.4 21 0.00072 31.5 1.7 15 160-174 10-24 (203)
412 3gfo_A Cobalt import ATP-bindi 28.3 22 0.00076 34.3 1.9 17 157-173 33-49 (275)
413 3be4_A Adenylate kinase; malar 28.3 23 0.00078 32.2 1.9 17 158-174 5-21 (217)
414 1ji0_A ABC transporter; ATP bi 28.1 23 0.00079 33.1 1.9 17 157-173 31-47 (240)
415 2z0h_A DTMP kinase, thymidylat 27.8 22 0.00077 31.2 1.7 15 161-175 3-17 (197)
416 4g1u_C Hemin import ATP-bindin 27.6 23 0.0008 33.8 1.9 17 157-173 36-52 (266)
417 2ghi_A Transport protein; mult 27.6 27 0.00091 33.2 2.3 17 157-173 45-61 (260)
418 1b0u_A Histidine permease; ABC 27.5 24 0.00081 33.6 1.9 17 157-173 31-47 (262)
419 3a4m_A L-seryl-tRNA(SEC) kinas 27.5 23 0.00077 33.4 1.7 17 159-175 5-21 (260)
420 2ff7_A Alpha-hemolysin translo 27.4 27 0.00093 32.9 2.3 17 157-173 34-50 (247)
421 1e4v_A Adenylate kinase; trans 27.3 23 0.00079 32.0 1.7 15 160-174 2-16 (214)
422 4e22_A Cytidylate kinase; P-lo 27.2 24 0.00082 33.1 1.9 18 157-174 26-43 (252)
423 3tqf_A HPR(Ser) kinase; transf 27.0 24 0.00083 32.1 1.7 18 157-174 15-32 (181)
424 3mm4_A Histidine kinase homolo 26.8 2.6E+02 0.0089 24.5 8.9 56 154-209 16-75 (206)
425 2zu0_C Probable ATP-dependent 26.5 25 0.00087 33.5 1.9 17 157-173 45-61 (267)
426 2yz2_A Putative ABC transporte 26.5 26 0.00087 33.4 1.9 17 157-173 32-48 (266)
427 2qi9_C Vitamin B12 import ATP- 26.4 26 0.00088 33.2 1.9 17 157-173 25-41 (249)
428 2p5t_B PEZT; postsegregational 26.4 18 0.00061 33.9 0.8 17 158-174 32-48 (253)
429 3sr0_A Adenylate kinase; phosp 26.3 24 0.00081 32.4 1.6 14 161-174 3-16 (206)
430 2nq2_C Hypothetical ABC transp 26.2 26 0.00089 33.2 1.9 17 157-173 30-46 (253)
431 2ixe_A Antigen peptide transpo 26.1 26 0.0009 33.5 1.9 17 157-173 44-60 (271)
432 1vpl_A ABC transporter, ATP-bi 26.0 26 0.0009 33.3 1.9 17 157-173 40-56 (256)
433 3aez_A Pantothenate kinase; tr 26.0 38 0.0013 33.2 3.1 25 158-184 90-114 (312)
434 2f1r_A Molybdopterin-guanine d 25.9 17 0.0006 32.3 0.6 15 161-175 5-19 (171)
435 1mv5_A LMRA, multidrug resista 25.8 25 0.00087 32.9 1.7 17 157-173 27-43 (243)
436 1e69_A Chromosome segregation 25.6 27 0.00092 34.1 1.9 15 161-175 27-41 (322)
437 1w36_B RECB, exodeoxyribonucle 25.5 51 0.0017 38.4 4.5 54 157-211 16-72 (1180)
438 2olj_A Amino acid ABC transpor 25.3 28 0.00094 33.3 1.9 17 157-173 49-65 (263)
439 1vht_A Dephospho-COA kinase; s 25.3 26 0.00089 31.6 1.7 16 159-174 5-20 (218)
440 2v3c_C SRP54, signal recogniti 25.1 55 0.0019 33.6 4.3 18 159-176 100-117 (432)
441 2d2e_A SUFC protein; ABC-ATPas 25.1 32 0.0011 32.4 2.3 17 157-173 28-44 (250)
442 2xb4_A Adenylate kinase; ATP-b 25.1 26 0.0009 32.0 1.7 14 161-174 3-16 (223)
443 1pui_A ENGB, probable GTP-bind 25.0 24 0.00083 31.2 1.4 17 157-173 25-41 (210)
444 2i3b_A HCR-ntpase, human cance 25.0 35 0.0012 30.8 2.5 18 158-175 1-18 (189)
445 2ihy_A ABC transporter, ATP-bi 24.9 28 0.00097 33.5 1.9 17 157-173 46-62 (279)
446 3thx_A DNA mismatch repair pro 24.6 38 0.0013 38.6 3.2 18 158-175 662-679 (934)
447 2jeo_A Uridine-cytidine kinase 24.6 28 0.00095 32.3 1.8 18 158-175 25-42 (245)
448 3tlx_A Adenylate kinase 2; str 24.5 27 0.00094 32.5 1.7 17 158-174 29-45 (243)
449 2onk_A Molybdate/tungstate ABC 24.4 28 0.00096 32.7 1.7 13 161-173 27-39 (240)
450 1j8m_F SRP54, signal recogniti 24.3 73 0.0025 30.8 4.8 19 158-176 98-116 (297)
451 3umf_A Adenylate kinase; rossm 24.0 28 0.00096 32.3 1.6 16 159-174 30-45 (217)
452 1htw_A HI0065; nucleotide-bind 23.7 28 0.00094 30.5 1.5 26 157-184 32-57 (158)
453 2h92_A Cytidylate kinase; ross 23.7 34 0.0011 30.8 2.1 17 158-174 3-19 (219)
454 1ltq_A Polynucleotide kinase; 23.7 29 0.001 33.0 1.7 16 160-175 4-19 (301)
455 2dyk_A GTP-binding protein; GT 23.5 28 0.00097 28.9 1.5 14 160-173 3-16 (161)
456 1yrb_A ATP(GTP)binding protein 23.4 68 0.0023 29.5 4.3 15 160-174 16-30 (262)
457 2ce2_X GTPase HRAS; signaling 23.1 29 0.001 28.8 1.5 14 160-173 5-18 (166)
458 3sop_A Neuronal-specific septi 23.1 29 0.00099 33.2 1.6 14 160-173 4-17 (270)
459 1tf7_A KAIC; homohexamer, hexa 22.9 48 0.0016 34.8 3.4 28 157-184 38-65 (525)
460 3p32_A Probable GTPase RV1496/ 22.8 73 0.0025 31.4 4.6 16 160-175 81-96 (355)
461 1z2a_A RAS-related protein RAB 22.4 31 0.0011 28.9 1.5 14 160-173 7-20 (168)
462 2rcn_A Probable GTPase ENGC; Y 22.4 87 0.003 31.4 5.0 41 133-173 185-230 (358)
463 1odf_A YGR205W, hypothetical 3 22.1 33 0.0011 33.3 1.7 15 161-175 34-48 (290)
464 2grj_A Dephospho-COA kinase; T 22.1 33 0.0011 31.0 1.7 40 160-214 14-53 (192)
465 2f9l_A RAB11B, member RAS onco 21.9 34 0.0012 30.1 1.8 14 160-173 7-20 (199)
466 1gtv_A TMK, thymidylate kinase 21.9 17 0.00058 32.5 -0.4 14 161-174 3-16 (214)
467 2ged_A SR-beta, signal recogni 21.8 35 0.0012 29.6 1.7 15 159-173 49-63 (193)
468 4ag6_A VIRB4 ATPase, type IV s 21.7 43 0.0015 33.4 2.6 31 233-263 262-295 (392)
469 2bbs_A Cystic fibrosis transme 21.6 40 0.0014 32.7 2.3 17 157-173 63-79 (290)
470 3ake_A Cytidylate kinase; CMP 21.3 36 0.0012 30.0 1.8 16 160-175 4-19 (208)
471 1q3t_A Cytidylate kinase; nucl 21.2 39 0.0013 31.0 2.0 19 157-175 15-33 (236)
472 2h57_A ADP-ribosylation factor 21.1 36 0.0012 29.6 1.7 15 159-173 22-36 (190)
473 1nrj_B SR-beta, signal recogni 20.9 37 0.0013 30.2 1.8 15 159-173 13-27 (218)
474 2pjz_A Hypothetical protein ST 20.9 40 0.0014 32.1 2.1 30 233-262 146-175 (263)
475 1z0j_A RAB-22, RAS-related pro 20.9 34 0.0012 28.6 1.5 14 160-173 8-21 (170)
476 1ko7_A HPR kinase/phosphatase; 20.8 1.3E+02 0.0044 29.6 5.8 46 128-173 92-159 (314)
477 2vp4_A Deoxynucleoside kinase; 20.8 33 0.0011 31.5 1.4 16 158-173 20-35 (230)
478 1oix_A RAS-related protein RAB 20.8 37 0.0013 29.8 1.7 14 160-173 31-44 (191)
479 1g16_A RAS-related protein SEC 20.8 35 0.0012 28.6 1.5 14 160-173 5-18 (170)
480 1ky3_A GTP-binding protein YPT 20.7 35 0.0012 29.0 1.5 14 160-173 10-23 (182)
481 1ek0_A Protein (GTP-binding pr 20.6 35 0.0012 28.5 1.5 14 160-173 5-18 (170)
482 3bs4_A Uncharacterized protein 20.5 61 0.0021 31.0 3.3 37 158-203 21-57 (260)
483 1svm_A Large T antigen; AAA+ f 20.5 39 0.0013 34.2 2.0 17 157-173 168-184 (377)
484 1sq5_A Pantothenate kinase; P- 20.4 37 0.0013 32.9 1.7 23 160-184 82-104 (308)
485 1uj2_A Uridine-cytidine kinase 20.3 37 0.0013 31.6 1.7 16 160-175 24-39 (252)
486 1kao_A RAP2A; GTP-binding prot 20.2 36 0.0012 28.2 1.5 14 160-173 5-18 (167)
487 1u8z_A RAS-related protein RAL 20.1 37 0.0013 28.2 1.5 14 160-173 6-19 (168)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-53 Score=451.19 Aligned_cols=258 Identities=35% Similarity=0.576 Sum_probs=235.5
Q ss_pred hcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 106 QLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 106 ~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+..+++.|.++|.|+.+|++++|++.++++|+++||.+|||+|.++||.+++|+|++++|+||||||++|++|++.++..
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCc
Q 042373 186 QPPVVPGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGV 226 (494)
Q Consensus 186 ~~~~~~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~ 226 (494)
..... ...++++|||+|||+||.|+ +||++|.+++.++
T Consensus 121 ~~~~~-~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-- 197 (434)
T 2db3_A 121 DPHEL-ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-- 197 (434)
T ss_dssp SCCCC-CTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--
T ss_pred ccccc-ccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--
Confidence 64321 22378999999999999998 7999999999874
Q ss_pred ceecccceEEEEEcccchhcccCChhHHHHHHHhh--cCCCcEEEecCCCChHHHHHHHh--------------------
Q 042373 227 KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RPDRQAVLFSPTFPPRVEILARK-------------------- 284 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l--~~~~Q~ilfSAT~~~~v~~l~~~-------------------- 284 (494)
...++++++|||||||+|+++||.+++..|+..+ ++.+|+++||||+|+.+..++..
T Consensus 198 -~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 276 (434)
T 2db3_A 198 -FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDV 276 (434)
T ss_dssp -SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTE
T ss_pred -CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccccccccc
Confidence 3578999999999999999999999999999985 67899999999999999888875
Q ss_pred -----------------------------------------------------------------------cCCccceee
Q 042373 285 -----------------------------------------------------------------------TNVCNLSIA 293 (494)
Q Consensus 285 -----------------------------------------------------------------------~g~~~ILVa 293 (494)
.|..+||||
T Consensus 277 ~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 277 KQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred ceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 789999999
Q ss_pred ccccccCCCCCCceEEEecCCCCCHhHHHhhhccCC---CcceEEEEecc-cCHHHHHHHHHHHHhccCcchHHHHHH
Q 042373 294 NSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISE-ENAIYATDLVKAFELSELVVRDDLKAV 367 (494)
Q Consensus 294 Tdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitfv~~-~~~~~~~~i~~~l~~~~~~vp~~l~~~ 367 (494)
|++++||||+++|++|||||+|.+..+|+||+||+| +.|.|++|+++ ++...+..+.+.|+.++++||++|.++
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999999999999999999999999999999999955 57899999995 578899999999999999999998653
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-46 Score=389.11 Aligned_cols=258 Identities=36% Similarity=0.554 Sum_probs=232.6
Q ss_pred ceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCC
Q 042373 109 LKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPP 188 (494)
Q Consensus 109 i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~ 188 (494)
|.+.|.++|.|+.+|++++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++++.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999875431
Q ss_pred C------------CCCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHH
Q 042373 189 V------------VPGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRM 217 (494)
Q Consensus 189 ~------------~~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl 217 (494)
. .....++++|||+|||+|+.|+ +||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 0112258899999999999997 799999
Q ss_pred HHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh--cC--CCcEEEecCCCChHHHHHHHh---------
Q 042373 218 IDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RP--DRQAVLFSPTFPPRVEILARK--------- 284 (494)
Q Consensus 218 ~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l--~~--~~Q~ilfSAT~~~~v~~l~~~--------- 284 (494)
.+++..+. ..++++++||+||||++++++|...+..++... +. .+|+++||||+++.+..++..
T Consensus 163 ~~~l~~~~---~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2i4i_A 163 VDMMERGK---IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239 (417)
T ss_dssp HHHHHTTS---BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHcCC---cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 99988643 468899999999999999999999999999853 33 689999999999988877654
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 240 VGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp EC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred eCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence
Q ss_pred ----cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 285 ----TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 285 ----~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
.|..+|||||+++++|+|+|++++||+||+|.+...|+||+||+|| .|.|++|+++.+...+..+.+++....
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999665 688999999999999999999999999
Q ss_pred CcchHHHHHHHH
Q 042373 358 LVVRDDLKAVAD 369 (494)
Q Consensus 358 ~~vp~~l~~~~~ 369 (494)
+.+|.+|..++.
T Consensus 400 ~~~~~~l~~~~~ 411 (417)
T 2i4i_A 400 QEVPSWLENMAY 411 (417)
T ss_dssp CCCCHHHHHHHT
T ss_pred CcCCHHHHHHHH
Confidence 999999988864
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.2e-43 Score=366.45 Aligned_cols=244 Identities=30% Similarity=0.444 Sum_probs=219.2
Q ss_pred eccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC
Q 042373 111 IREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190 (494)
Q Consensus 111 v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~ 190 (494)
......+.++.+|++++|++.++++|.++||.+|+|+|.++|+.++.|+|++++++||||||++|++|+++.+...
T Consensus 27 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---- 102 (410)
T 2j0s_A 27 FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---- 102 (410)
T ss_dssp CCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----
T ss_pred cCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc----
Confidence 3344555678899999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecc
Q 042373 191 PGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 191 ~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l 231 (494)
..++++|||+|||+|+.|+ +||++|.+++..+ ...+
T Consensus 103 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~---~~~~ 177 (410)
T 2j0s_A 103 --VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR---SLRT 177 (410)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT---SSCC
T ss_pred --cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC---CccH
Confidence 1267999999999999997 6999999999874 3467
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------- 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------- 284 (494)
.++++||+||||+|++++|...+..++..+++.+|+++||||+++.+..+...
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV 257 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEE
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEe
Confidence 89999999999999999999999999999999999999999999887765543
Q ss_pred ------------------------------------------------------------------cCCccceeeccccc
Q 042373 285 ------------------------------------------------------------------TNVCNLSIANSVRA 298 (494)
Q Consensus 285 ------------------------------------------------------------------~g~~~ILVaTdv~~ 298 (494)
.|..+|||||++++
T Consensus 258 ~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 337 (410)
T 2j0s_A 258 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337 (410)
T ss_dssp SSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS
T ss_pred CcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 68899999999999
Q ss_pred cCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHH
Q 042373 299 RGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDD 363 (494)
Q Consensus 299 rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~ 363 (494)
+|+|+|++++||+||+|.+...|+||+||+|| .|.+++|+++.+...+..+.++++....++|.+
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999655 788999999999999999999998877777643
No 4
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=377.53 Aligned_cols=245 Identities=27% Similarity=0.423 Sum_probs=148.3
Q ss_pred ceeccCCCCCC---CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 109 LKIREKCAPKP---IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 109 i~v~g~~~P~p---i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l 183 (494)
+.+.+.+.|.| +.+|++++|++.+++.|.++||..|||+|.++||.++.| +|+|++||||||||++|++|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 44555555554 678999999999999999999999999999999999997 9999999999999999999999877
Q ss_pred HcCCCCCCCCCCCeEEEEccchhHHHhh-------------------------------------hhhhHHHHHHHhcCc
Q 042373 184 WEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------------------------VRRGRMIDLLCKNGV 226 (494)
Q Consensus 184 ~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------------------------~TPgrl~dll~~~~~ 226 (494)
... ..++++|||+|||+|+.|+ +||++|.+++...
T Consensus 157 ~~~------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-- 228 (479)
T 3fmp_B 157 EPA------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-- 228 (479)
T ss_dssp CTT------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS--
T ss_pred hhc------CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc--
Confidence 432 2267999999999999997 7999999999753
Q ss_pred ceecccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------
Q 042373 227 KITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------- 284 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------- 284 (494)
+.+.++++++|||||||+|++ .+|...+..++..++..+|+++||||++..+..++..
T Consensus 229 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 308 (479)
T 3fmp_B 229 KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 308 (479)
T ss_dssp CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------
T ss_pred CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCce
Confidence 346789999999999999997 6899999999999999999999999999998877765
Q ss_pred ------------------------------------------------------------------------cCCcccee
Q 042373 285 ------------------------------------------------------------------------TNVCNLSI 292 (494)
Q Consensus 285 ------------------------------------------------------------------------~g~~~ILV 292 (494)
.|..+|||
T Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv 388 (479)
T 3fmp_B 309 QYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 388 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 68899999
Q ss_pred eccccccCCCCCCceEEEecCCC------CCHhHHHhhhccCCC---cceEEEEecccC-HHHHHHHHHHHHhccCcch
Q 042373 293 ANSVRARGLDEKELELVINFDAP------NDYEDYVHHCCQSWL---KSCAFRFISEEN-AIYATDLVKAFELSELVVR 361 (494)
Q Consensus 293 aTdv~~rGlDi~~v~~VInyd~P------~s~~~yvhR~GRaGr---~G~aitfv~~~~-~~~~~~i~~~l~~~~~~vp 361 (494)
||+++++|||+|+|++|||||+| .+...|+||+||+|| .|.|++|+++.+ ..++..|.+.+......++
T Consensus 389 ~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 389 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 99999999999999999999999 567899999999765 688999998764 7788888888877666655
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.6e-43 Score=360.89 Aligned_cols=247 Identities=30% Similarity=0.448 Sum_probs=214.8
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC
Q 042373 112 REKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP 191 (494)
Q Consensus 112 ~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~ 191 (494)
...+.+..+.+|+++++++.+++.|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+....
T Consensus 31 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---- 106 (414)
T 3eiq_A 31 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL---- 106 (414)
T ss_dssp CCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----
T ss_pred cCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----
Confidence 3456677889999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCeEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecc
Q 042373 192 GDDSPVGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 192 ~~~~p~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l 231 (494)
.++++||++||++|+.|+ +||++|.+++... ...+
T Consensus 107 --~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~ 181 (414)
T 3eiq_A 107 --KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR---YLSP 181 (414)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT---SSCS
T ss_pred --CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC---Cccc
Confidence 267899999999999997 6999999999874 3467
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------- 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------- 284 (494)
.++++||+||||++.+++|...+..++..+++.+|+++||||++..+..+...
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINV 261 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEEC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEe
Confidence 88999999999999999999999999999999999999999999988877764
Q ss_pred ------------------------------------------------------------------cCCccceeeccccc
Q 042373 285 ------------------------------------------------------------------TNVCNLSIANSVRA 298 (494)
Q Consensus 285 ------------------------------------------------------------------~g~~~ILVaTdv~~ 298 (494)
.|..+|||||++++
T Consensus 262 ~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 262 EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp SSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred ChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 68899999999999
Q ss_pred cCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHH
Q 042373 299 RGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAV 367 (494)
Q Consensus 299 rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~ 367 (494)
+|+|+|++++||+||+|.+...|+||+||+|| .|.|++|+++.+...+..+.++++....++|.++.++
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999765 5789999999999999999999999999999777654
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.1e-42 Score=355.49 Aligned_cols=239 Identities=28% Similarity=0.407 Sum_probs=212.3
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC
Q 042373 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~ 193 (494)
.+.++.+|++++|++.+++.|.++||..|+|+|.++|+.++.| +|+++++|||||||++|++|+++++....
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~------ 93 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------ 93 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS------
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC------
Confidence 3356889999999999999999999999999999999999998 99999999999999999999999875432
Q ss_pred CCCeEEEEccchhHHHhh-------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 194 DSPVGLVMAPTGELVRQQ-------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 194 ~~p~aLIl~PTreLa~Qi-------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++++|||+||++|+.|+ +||++|.+++... +...++++++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~~~ 171 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL--KFIDPKKIKV 171 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS--CSSCGGGCCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc--CCcChhhCcE
Confidence 267999999999999997 7999999988653 3456889999
Q ss_pred EEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------
Q 042373 237 LVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------- 284 (494)
Q Consensus 237 lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------- 284 (494)
||+||||++++ .+|...+..++..++..+|++++|||+++.+..++..
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 251 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHH
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChH
Confidence 99999999997 7899999999999999999999999999988877765
Q ss_pred --------------------------------------------------------------cCCccceeeccccccCCC
Q 042373 285 --------------------------------------------------------------TNVCNLSIANSVRARGLD 302 (494)
Q Consensus 285 --------------------------------------------------------------~g~~~ILVaTdv~~rGlD 302 (494)
.|..+|||||+++++|+|
T Consensus 252 ~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 252 EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 689999999999999999
Q ss_pred CCCceEEEecCCC------CCHhHHHhhhccCCC---cceEEEEeccc-CHHHHHHHHHHHHhccCcchH
Q 042373 303 EKELELVINFDAP------NDYEDYVHHCCQSWL---KSCAFRFISEE-NAIYATDLVKAFELSELVVRD 362 (494)
Q Consensus 303 i~~v~~VInyd~P------~s~~~yvhR~GRaGr---~G~aitfv~~~-~~~~~~~i~~~l~~~~~~vp~ 362 (494)
+|++++||+||+| .+...|+||+||+|| .|.+++|+++. +...+..+.+.++.....++.
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 9999999999999 578999999999766 68899999876 478889999998877777663
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5e-41 Score=344.51 Aligned_cols=242 Identities=31% Similarity=0.503 Sum_probs=210.1
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
..+.+|++++|++.++++|.++||..|+|+|.++|+.++.| +|+++++|||||||++|++|++.++.... .+
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~------~~ 75 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED------AS 75 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC------CS
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC------CC
Confidence 35689999999999999999999999999999999999998 99999999999999999999999875422 26
Q ss_pred CeEEEEccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 196 PVGLVMAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
+++||++||++|+.|+ +||++|.+++... ...+.++++||+|
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~iIiD 152 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRK---LMQLQKIKIFVLD 152 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTT---CBCCTTCCEEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcC---CcccccCCEEEEE
Confidence 7899999999999997 7999999988764 3468899999999
Q ss_pred ccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 241 EADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 241 EaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
|||++.+ ++|...+..+...++++.|++++|||+++.+..++..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999998 7889999999999999999999999999988887765
Q ss_pred ----------------------------------------------------------cCCccceeeccccccCCCCCCc
Q 042373 285 ----------------------------------------------------------TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v 306 (494)
.|..+|||||+++++|+|+|++
T Consensus 233 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 312 (395)
T 3pey_A 233 VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTV 312 (395)
T ss_dssp HHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccC
Confidence 6899999999999999999999
Q ss_pred eEEEecCCCC------CHhHHHhhhccCCC---cceEEEEeccc-CHHHHHHHHHHHH-hccCcch-HHHHHHH
Q 042373 307 ELVINFDAPN------DYEDYVHHCCQSWL---KSCAFRFISEE-NAIYATDLVKAFE-LSELVVR-DDLKAVA 368 (494)
Q Consensus 307 ~~VInyd~P~------s~~~yvhR~GRaGr---~G~aitfv~~~-~~~~~~~i~~~l~-~~~~~vp-~~l~~~~ 368 (494)
++||+||+|. +...|+||+||+|| .|.+++|+++. +...+..+.+.+. .....+| ..+..+.
T Consensus 313 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 313 SMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp EEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred CEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 9999999999 99999999999765 57899999864 5567777777776 4444444 2344443
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.1e-41 Score=348.76 Aligned_cols=238 Identities=27% Similarity=0.434 Sum_probs=214.2
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
.+..+|++++|++.++++|.++||..|+|+|.++++.++.|+|+++++|||||||++|++|++.++... ..+++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------~~~~~ 91 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK------LNKIQ 91 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc------cCCcc
Confidence 456789999999999999999999999999999999999999999999999999999999999887432 12678
Q ss_pred EEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 198 GLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 198 aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
+||++||++|+.|+ +||++|.+++... ...+.++++||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~---~~~~~~~~~vI 168 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK---VADLSDCSLFI 168 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---CSCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC---CcccccCCEEE
Confidence 99999999999997 6999999888764 34688999999
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
+||||++++.+|...+..++..+++..|++++|||++..+..+...
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 248 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHC 248 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHH
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHH
Confidence 9999999999999999999999999999999999999988776654
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.|..+|||||+++++|+|+|+++
T Consensus 249 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 249 LNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 68899999999999999999999
Q ss_pred EEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHH
Q 042373 308 LVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDL 364 (494)
Q Consensus 308 ~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l 364 (494)
+||+||+|.+...|+||+||+|| .|.|++|+++.+...+..|.+.+....+++|.++
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred EEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999665 6799999999999999999999988888887654
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.4e-41 Score=371.02 Aligned_cols=235 Identities=26% Similarity=0.421 Sum_probs=205.8
Q ss_pred CCCCCcccCC----CCHHHHHHHHhCCCCCCChhHHHHHHHHH--cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC
Q 042373 118 KPIKTWRQTG----LTTKILETFSKLNHENPVAIQAPASALII--SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP 191 (494)
Q Consensus 118 ~pi~~f~~l~----L~~~ll~~l~~~g~~~ptpiQ~~aip~il--~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~ 191 (494)
.+..+|+++. |++.++++|.++||..|+|+|.++|+.++ .|+|+|++||||||||++|++|+++++......
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-- 91 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-- 91 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--
Confidence 3344566554 99999999999999999999999999999 789999999999999999999999999875421
Q ss_pred CCCCCeEEEEccchhHHHhh--------------------------------------------hhhhHHHHHHHhcCcc
Q 042373 192 GDDSPVGLVMAPTGELVRQQ--------------------------------------------VRRGRMIDLLCKNGVK 227 (494)
Q Consensus 192 ~~~~p~aLIl~PTreLa~Qi--------------------------------------------~TPgrl~dll~~~~~~ 227 (494)
...++++|||+|||+||.|+ +||++|.+++... .
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~--~ 169 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY--S 169 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--H
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc--c
Confidence 22367999999999999987 7999999988764 2
Q ss_pred eecccceEEEEEcccchhcccCChhHHHHHHHhhcC-------CCcEEEecCCCChHHHHHHHh----------------
Q 042373 228 ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-------DRQAVLFSPTFPPRVEILARK---------------- 284 (494)
Q Consensus 228 ~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-------~~Q~ilfSAT~~~~v~~l~~~---------------- 284 (494)
...++++++|||||||+|+++||.+.+..|+..++. .+|+++||||+++.+..++..
T Consensus 170 ~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~ 249 (579)
T 3sqw_A 170 NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN 249 (579)
T ss_dssp HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS
T ss_pred ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcc
Confidence 346889999999999999999999999999887743 679999999999988776554
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 250 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 250 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 329 (579)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHH
Confidence
Q ss_pred ---------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHH
Q 042373 285 ---------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKA 352 (494)
Q Consensus 285 ---------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~ 352 (494)
.|..+|||||++++||||+|+|++||+||+|.+...|+||+||+|| .|.|++|+++.+..++..|.+.
T Consensus 330 R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 330 RTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999655 6789999999999999999887
Q ss_pred HHhc
Q 042373 353 FELS 356 (494)
Q Consensus 353 l~~~ 356 (494)
....
T Consensus 410 ~~~~ 413 (579)
T 3sqw_A 410 KNIV 413 (579)
T ss_dssp HCCC
T ss_pred hCCC
Confidence 6543
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.4e-41 Score=368.50 Aligned_cols=225 Identities=26% Similarity=0.453 Sum_probs=200.0
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHH--cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALII--SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il--~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
|++.++++|.++||..|+|+|.++|+.++ .|+|+|++||||||||++|++|+++++...... ...++++|||+|||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTR 156 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcCcH
Confidence 99999999999999999999999999999 679999999999999999999999999875421 22267899999999
Q ss_pred hHHHhh--------------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 206 ELVRQQ--------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 206 eLa~Qi--------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
+||.|+ +||++|.+++.... ...++++++|||||
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDE 234 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDE 234 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEEEeC
Confidence 999997 69999999887642 24588999999999
Q ss_pred cchhcccCChhHHHHHHHhhc-------CCCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIR-------PDRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~-------~~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
||+|++++|.+.+..|+..++ +.+|+++||||+++.+..++..
T Consensus 235 ah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (563)
T 3i5x_A 235 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI 314 (563)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE
T ss_pred HHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE
Confidence 999999999999999988763 3679999999999887666543
Q ss_pred ---------------------------------------------------------------------------cCCcc
Q 042373 285 ---------------------------------------------------------------------------TNVCN 289 (494)
Q Consensus 285 ---------------------------------------------------------------------------~g~~~ 289 (494)
.|..+
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 394 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 394 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred CchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 68999
Q ss_pred ceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhc
Q 042373 290 LSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELS 356 (494)
Q Consensus 290 ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~ 356 (494)
|||||+++++|||+|+|++||+||+|.++..|+||+||+|| .|.|++|+++.+..+++.+.+.....
T Consensus 395 vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 464 (563)
T 3i5x_A 395 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 464 (563)
T ss_dssp EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999665 67899999999999999998876643
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.7e-41 Score=347.25 Aligned_cols=243 Identities=30% Similarity=0.445 Sum_probs=144.8
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 115 ~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
...+++.+|++++|++.+++.|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|++..+.... .
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~------~ 88 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------K 88 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC------C
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC------C
Confidence 4567788999999999999999999999999999999999999999999999999999999999998875422 2
Q ss_pred CCeEEEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 195 SPVGLVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
++++||++||++|+.|+ +||++|.+.+.... ..+.++++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~ 165 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKM 165 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTS---SCCTTCCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCC---cchhhCcE
Confidence 67999999999999997 78999988887642 45789999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh--------------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK-------------------------------- 284 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------- 284 (494)
||+||||++.+++|...+..++..+++..|++++|||+++.+..+...
T Consensus 166 vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (394)
T 1fuu_A 166 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEY 245 (394)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------
T ss_pred EEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhh
Confidence 999999999999999999999999999999999999999887666543
Q ss_pred -------------------------------------------------------------cCCccceeeccccccCCCC
Q 042373 285 -------------------------------------------------------------TNVCNLSIANSVRARGLDE 303 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVaTdv~~rGlDi 303 (494)
.|..+|||||+++++|+|+
T Consensus 246 ~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 246 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 6788999999999999999
Q ss_pred CCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHHHH
Q 042373 304 KELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDLKA 366 (494)
Q Consensus 304 ~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~ 366 (494)
|++++||+||+|.+...|+||+||+|| .|.+++|+++.+...+..+.++++.....+|..+.+
T Consensus 326 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 326 QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred ccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 999999999999999999999999665 678999999999999999999998888888766543
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-39 Score=329.73 Aligned_cols=231 Identities=30% Similarity=0.489 Sum_probs=209.4
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
..+|++++|++.+++.|+++||..|+|+|.++|+.+++| +++++++|||||||++|++|++..+... .++++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-------~~~~~ 77 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-------NGIEA 77 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-------SSCCE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-------CCCcE
Confidence 467999999999999999999999999999999999999 7999999999999999999999886432 26789
Q ss_pred EEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 199 LVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 199 LIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
||++||++|+.|+ +||++|.+++..+. ..+.++++||+|
T Consensus 78 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~iIiD 154 (367)
T 1hv8_A 78 IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGT---LNLKNVKYFILD 154 (367)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCC---cccccCCEEEEe
Confidence 9999999999997 68999988887643 468899999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
|||++.+++|...+..++..+++..|++++|||+++.+..+...
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLL 234 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEeChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776654
Q ss_pred ---------------------------------------------------cCCccceeeccccccCCCCCCceEEEecC
Q 042373 285 ---------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFD 313 (494)
Q Consensus 285 ---------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd 313 (494)
.|..+|||||+++++|+|+|++++||+|+
T Consensus 235 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 235 KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYH 314 (367)
T ss_dssp CSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESS
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEec
Confidence 68899999999999999999999999999
Q ss_pred CCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcc
Q 042373 314 APNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVV 360 (494)
Q Consensus 314 ~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~v 360 (494)
+|.+..+|+||+||+|| .|.+++|+++.+...+..|.+.++....++
T Consensus 315 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 315 LPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp CCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred CCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 99999999999999665 678999999999999999999888765544
No 13
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-39 Score=335.09 Aligned_cols=234 Identities=26% Similarity=0.433 Sum_probs=207.8
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++++|++.++++|.++||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..+... ..++++||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC------TTCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc------CCCeeEEE
Confidence 579999999999999999999999999999999999999999999999999999999999887432 22678999
Q ss_pred EccchhHHHhh-----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 201 MAPTGELVRQQ-----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
++||++|+.|+ +||++|..++.... ..+.++++||+
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~vVi 158 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFIL 158 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCSEEEE
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccccccCEEEE
Confidence 99999999996 68889888877642 46889999999
Q ss_pred cccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 240 DEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
||||++.+ .+|...+..++...+..+|++++|||+++.+..++..
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN 238 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHH
T ss_pred eCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHH
Confidence 99999998 4888999999999989999999999999988777664
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|..+|||||+++++|+|+|+
T Consensus 239 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 239 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 688999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhccCCC---cceEEEEeccc-CHHHHHHHHHHHHhccCcchHH
Q 042373 306 LELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEE-NAIYATDLVKAFELSELVVRDD 363 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~-~~~~~~~i~~~l~~~~~~vp~~ 363 (494)
+++||+||+|.+...|+||+||+|| .|.+++|+++. +...+..+.+.+.....++|.+
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999665 67899999876 5577888888888777777754
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-38 Score=319.14 Aligned_cols=212 Identities=32% Similarity=0.513 Sum_probs=190.2
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
|++.|.+.|+++||..|+|+|.++++.+++|+++++++|||||||++|++|++.. ++++||++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 6789999999999999999999999999999999999999999999999999864 5689999999999
Q ss_pred HHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC
Q 042373 208 VRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG 249 (494)
Q Consensus 208 a~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g 249 (494)
+.|+ +||++|.+++... ...+.++++||+||||++.+++
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG---VIDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT---SCCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC---CcchhhCcEEEEEChHHhhccc
Confidence 9997 6899998888763 3467899999999999999999
Q ss_pred ChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------------------------
Q 042373 250 FEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------------------------- 284 (494)
Q Consensus 250 f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------------- 284 (494)
|...+..++..++...|++++|||+++.+......
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 225 (337)
T 2z0m_A 146 FIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIV 225 (337)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEE
T ss_pred cHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEE
Confidence 99999999999999999999999999988776654
Q ss_pred --------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhc
Q 042373 285 --------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCC 326 (494)
Q Consensus 285 --------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~G 326 (494)
.|..+|||||+++++|+|+|++++||+|++|.+...|+||+|
T Consensus 226 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~G 305 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIG 305 (337)
T ss_dssp ECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHT
T ss_pred EEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcC
Confidence 688999999999999999999999999999999999999999
Q ss_pred cCCC---cceEEEEecccCHHHHHHHHHHHHh
Q 042373 327 QSWL---KSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 327 RaGr---~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
|+|| .|.+++|+. .+......+.+.++.
T Consensus 306 R~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 306 RTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp TBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred ccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 9766 678999999 888888888777653
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-38 Score=336.20 Aligned_cols=242 Identities=26% Similarity=0.375 Sum_probs=175.9
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC
Q 042373 113 EKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190 (494)
Q Consensus 113 g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~ 190 (494)
....|.++..|...++++.+++.|.+.||..|+++|.++|+.+++| +++|++++||||||++|++|++.++....
T Consensus 111 ~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--- 187 (508)
T 3fho_A 111 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--- 187 (508)
T ss_dssp ----------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC---
T ss_pred ccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC---
Confidence 3445666777888899999999999999999999999999999998 99999999999999999999999875432
Q ss_pred CCCCCCeEEEEccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceE
Q 042373 191 PGDDSPVGLVMAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 191 ~~~~~p~aLIl~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
.++++|||+||++|+.|+ +||++|.+++.... ..+.+++
T Consensus 188 ---~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~---~~~~~~~ 261 (508)
T 3fho_A 188 ---PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQ---LDARDIK 261 (508)
T ss_dssp ---CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTC---SCCTTCC
T ss_pred ---CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCC---ccccCCC
Confidence 267899999999999997 79999999887643 4688999
Q ss_pred EEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 236 YLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 236 ~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
+||+||||++.+ ++|...+..++..+++..|++++|||+++.+..+...
T Consensus 262 lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 262 VFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp EEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C
T ss_pred EEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch
Confidence 999999999998 7899999999999999999999999999988877765
Q ss_pred ---------------------------------------------------------------cCCccceeeccccccCC
Q 042373 285 ---------------------------------------------------------------TNVCNLSIANSVRARGL 301 (494)
Q Consensus 285 ---------------------------------------------------------------~g~~~ILVaTdv~~rGl 301 (494)
.|..+|||||+++++|+
T Consensus 342 ~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 68899999999999999
Q ss_pred CCCCceEEEecCCC------CCHhHHHhhhccCCC---cceEEEEecc-cCHHHHHHHHHHHHhccCcchHH
Q 042373 302 DEKELELVINFDAP------NDYEDYVHHCCQSWL---KSCAFRFISE-ENAIYATDLVKAFELSELVVRDD 363 (494)
Q Consensus 302 Di~~v~~VInyd~P------~s~~~yvhR~GRaGr---~G~aitfv~~-~~~~~~~~i~~~l~~~~~~vp~~ 363 (494)
|+|++++||+||+| .+...|+||+||+|| .|.+++|+++ .+...+..+.+++......+|.+
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 99999999999999 889999999999776 6789999984 56778888999888877777743
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.7e-37 Score=337.48 Aligned_cols=218 Identities=20% Similarity=0.309 Sum_probs=184.3
Q ss_pred CCCCCCcc--cCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC
Q 042373 117 PKPIKTWR--QTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193 (494)
Q Consensus 117 P~pi~~f~--~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~ 193 (494)
+.....|. ++++++.+.+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------- 83 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------- 83 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------
Confidence 34455665 47899999999998 79999999999999999999999999999999999999999842
Q ss_pred CCCeEEEEccchhHHHhh-----------------------------------------hhhhHHH------HHHHhcCc
Q 042373 194 DSPVGLVMAPTGELVRQQ-----------------------------------------VRRGRMI------DLLCKNGV 226 (494)
Q Consensus 194 ~~p~aLIl~PTreLa~Qi-----------------------------------------~TPgrl~------dll~~~~~ 226 (494)
.+.+|||+||++|+.|+ +||++|. +.+..
T Consensus 84 -~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--- 159 (591)
T 2v1x_A 84 -DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--- 159 (591)
T ss_dssp -SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH---
T ss_pred -CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh---
Confidence 45899999999999987 5777653 23322
Q ss_pred ceecccceEEEEEcccchhcccC--ChhHHHH--HHHhhcCCCcEEEecCCCChHHHHHHHh------------------
Q 042373 227 KITNLTRVTYLVLDEADRMFDMG--FEPQITR--IVQNIRPDRQAVLFSPTFPPRVEILARK------------------ 284 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~~g--f~~~i~~--Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------ 284 (494)
...+.++.+|||||||++.+|| |++.+.. ++....++.|+++||||+++.+...+..
T Consensus 160 -~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~n 238 (591)
T 2v1x_A 160 -AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPN 238 (591)
T ss_dssp -HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTT
T ss_pred -hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcc
Confidence 3457799999999999999998 8888766 4555567899999999999887655443
Q ss_pred ----------------------------------------------------------------------------cCCc
Q 042373 285 ----------------------------------------------------------------------------TNVC 288 (494)
Q Consensus 285 ----------------------------------------------------------------------------~g~~ 288 (494)
.|..
T Consensus 239 l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~ 318 (591)
T 2v1x_A 239 LYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEI 318 (591)
T ss_dssp EEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred cEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 7899
Q ss_pred cceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHH
Q 042373 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLV 350 (494)
Q Consensus 289 ~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~ 350 (494)
+|||||+++++|||+|+|++|||||+|.+++.|+||+||+|| .|.|++|+++.+...+..+.
T Consensus 319 ~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 319 QVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred eEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999776 56899999988766655443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2e-36 Score=327.26 Aligned_cols=216 Identities=18% Similarity=0.274 Sum_probs=179.5
Q ss_pred CCCcccCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
+.+|++++|++.+.+.|++ +||..|+|+|.++|+.+++|+|+++++|||||||++|++|++.. ...+
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~ 68 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLT 68 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCE
Confidence 3679999999999999998 89999999999999999999999999999999999999999842 3579
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||+|+++|+.|+ +||++|...... ..+...++.+|||
T Consensus 69 lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~---~~l~~~~~~~vVi 145 (523)
T 1oyw_A 69 VVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL---EHLAHWNPVLLAV 145 (523)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH---HHHTTSCEEEEEE
T ss_pred EEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH---HHHhhCCCCEEEE
Confidence 9999999999987 455555311100 1123478999999
Q ss_pred cccchhcccC--ChhHHHHH---HHhhcCCCcEEEecCCCChHHHH-HHHh-----------------------------
Q 042373 240 DEADRMFDMG--FEPQITRI---VQNIRPDRQAVLFSPTFPPRVEI-LARK----------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~g--f~~~i~~I---l~~l~~~~Q~ilfSAT~~~~v~~-l~~~----------------------------- 284 (494)
||||++.+|| |++.+..+ ...+ +..+++++|||+++.+.. +...
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~ 224 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL 224 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHH
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHH
Confidence 9999999998 77776654 3333 578999999999987654 2221
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|..+|||||+++++|||+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 789999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHH
Q 042373 306 LELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~ 351 (494)
|++|||||+|.+++.|+||+||+|| .|.|++|+++.+...++.+..
T Consensus 305 v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999877 568999999887766655443
No 18
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.3e-35 Score=288.57 Aligned_cols=187 Identities=45% Similarity=0.743 Sum_probs=169.8
Q ss_pred HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHH
Q 042373 102 AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181 (494)
Q Consensus 102 ~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~ 181 (494)
.+++..+|.+.|.+.|.|+.+|++++|++.+++.|.++||..|+|+|.++||.++.|+|++++||||||||++|++|++.
T Consensus 10 ~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~ 89 (242)
T 3fe2_A 10 TYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 89 (242)
T ss_dssp HHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHH
Q 042373 182 HIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLC 222 (494)
Q Consensus 182 ~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~ 222 (494)
++...+.... ..++++|||+|||+|+.|+ +||++|.+++.
T Consensus 90 ~l~~~~~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 168 (242)
T 3fe2_A 90 HINHQPFLER-GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 168 (242)
T ss_dssp HHHTSCCCCT-TCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred HHHhcccccc-CCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 9986543222 2378999999999999998 79999999998
Q ss_pred hcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 223 KNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 223 ~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
.+. ..++++++||+||||+|++++|...+..|+..+++++|+++||||+|+.+..+++..-...+.|
T Consensus 169 ~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i 235 (242)
T 3fe2_A 169 CGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 235 (242)
T ss_dssp HTS---CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cCC---CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEE
Confidence 643 4789999999999999999999999999999999999999999999999999998754444443
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.3e-36 Score=312.57 Aligned_cols=207 Identities=22% Similarity=0.264 Sum_probs=174.3
Q ss_pred HHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 131 KILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 131 ~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.+.+.+++ +|| +|||+|.++|+.++.|+|++++||||||||++|++|++..+. .++++|||+|||+|+.
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHHH
Confidence 34445554 566 899999999999999999999999999999999999988762 1789999999999999
Q ss_pred hh------------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccch---
Q 042373 210 QQ------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR--- 244 (494)
Q Consensus 210 Qi------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~--- 244 (494)
|+ +||++|.+++.. ..+.++++||+||||+
T Consensus 79 q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~~~~ 153 (414)
T 3oiy_A 79 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLK 153 (414)
T ss_dssp HHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHHHHH
T ss_pred HHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHhhhh
Confidence 87 677887776653 4577999999999965
Q ss_pred -------hcc-cCChhH-HHHHHHhhc-----------CCCcEEEecCC-CChHHH-HHHHh------------------
Q 042373 245 -------MFD-MGFEPQ-ITRIVQNIR-----------PDRQAVLFSPT-FPPRVE-ILARK------------------ 284 (494)
Q Consensus 245 -------ml~-~gf~~~-i~~Il~~l~-----------~~~Q~ilfSAT-~~~~v~-~l~~~------------------ 284 (494)
|++ +||.+. +..++..++ +.+|+++|||| +|..+. .+...
T Consensus 154 ~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 154 ASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITH 233 (414)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEE
T ss_pred ccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchh
Confidence 455 899998 899999887 88999999999 665433 11111
Q ss_pred -------------------------------------------------------------cCCccceee----cccccc
Q 042373 285 -------------------------------------------------------------TNVCNLSIA----NSVRAR 299 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVa----Tdv~~r 299 (494)
.|.++|||| |++++|
T Consensus 234 ~~~~~~~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~~~~f~~g~~~vLvat~s~T~~~~~ 313 (414)
T 3oiy_A 234 VRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTR 313 (414)
T ss_dssp EEESSCCHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHHHHHHHTTSCSEEEEECCTTCCCCC
T ss_pred eeeccCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchHHHHHhCCCCeEEEEecCcCchhhc
Confidence 268899999 999999
Q ss_pred CCCCCC-ceEEEecCCC--CCHhHHHhhhccCCC-------cceEEEEecccCHHHHHHHHHHHH
Q 042373 300 GLDEKE-LELVINFDAP--NDYEDYVHHCCQSWL-------KSCAFRFISEENAIYATDLVKAFE 354 (494)
Q Consensus 300 GlDi~~-v~~VInyd~P--~s~~~yvhR~GRaGr-------~G~aitfv~~~~~~~~~~i~~~l~ 354 (494)
|||+|+ |++|||||+| .+...|+||+||+|| .|.+++|+ .+...+..+.+.++
T Consensus 314 GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 314 GVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp CCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred cCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999 9999999999 999999999999777 57888888 67788888888887
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=342.78 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=131.8
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
...|..+++++.+...+...++..|+|+|.++|+.++.|+|+|++|+||||||++|++|++..+.. +.++|
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvl 231 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVI 231 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEE
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEE
Confidence 457888888888877777777778999999999999999999999999999999999999999853 67999
Q ss_pred EEccchhHHHhh----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCCh
Q 042373 200 VMAPTGELVRQQ----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFE 251 (494)
Q Consensus 200 Il~PTreLa~Qi----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~ 251 (494)
|++|||+|+.|+ +||++|.+++..+. ..++++.+|||||||+|.+++|.
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~---~~l~~l~lVVIDEaH~l~d~~rg 308 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERG 308 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCS---SHHHHEEEEEEETGGGTTSHHHH
T ss_pred EEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHHHHHcCc---cccccCCEEEEhhhhhccccchH
Confidence 999999999998 79999999998753 35889999999999999999999
Q ss_pred hHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 252 PQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 252 ~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
..+..++..+++.+|+++||||+|+
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSATipn 333 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSATIPN 333 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECSCSS
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCC
Confidence 9999999999999999999999865
No 21
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7e-37 Score=336.71 Aligned_cols=227 Identities=13% Similarity=0.139 Sum_probs=181.1
Q ss_pred CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 126 TGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 126 l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
+++++.++++|... +..|+|+|++++|.++.|+|+|++|+||||||++|++|+++.+... ++++|||+|||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--------~~~vLvl~Ptr 225 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--------RLRTLILAPTR 225 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--------TCCEEEEESSH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--------CCeEEEEcChH
Confidence 56777777666554 5899999999999999999999999999999999999999998752 67999999999
Q ss_pred hHHHhh-------------------hhhhHHHHHHHhcCc-----ceecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 206 ELVRQQ-------------------VRRGRMIDLLCKNGV-----KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 206 eLa~Qi-------------------~TPgrl~dll~~~~~-----~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
+||.|+ +||+++++++..+.. ....++++++|||||||+| +++|...+..|+..+
T Consensus 226 eLa~Qi~~~l~~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l 304 (618)
T 2whx_A 226 VVAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV 304 (618)
T ss_dssp HHHHHHHHHTTTSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHh
Confidence 999998 355554433221100 0123789999999999998 788999999999888
Q ss_pred c-CCCcEEEecCCCChHHHHHHHh--------------------------------------------------------
Q 042373 262 R-PDRQAVLFSPTFPPRVEILARK-------------------------------------------------------- 284 (494)
Q Consensus 262 ~-~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------------------------- 284 (494)
+ +++|+++||||++..+..++..
T Consensus 305 ~~~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~ 384 (618)
T 2whx_A 305 EMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ 384 (618)
T ss_dssp HHTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cccCccEEEEECCCchhhhhhhccCCceeeecccCCHHHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEE
Confidence 5 7899999999987654433221
Q ss_pred --------------cCCccceeeccccccCCCCCCceEE--------------------EecCCCCCHhHHHhhhccCCC
Q 042373 285 --------------TNVCNLSIANSVRARGLDEKELELV--------------------INFDAPNDYEDYVHHCCQSWL 330 (494)
Q Consensus 285 --------------~g~~~ILVaTdv~~rGlDi~~v~~V--------------------Inyd~P~s~~~yvhR~GRaGr 330 (494)
.|+.+|||||++++||||++ |++| ||||+|.+.++|+||+||+||
T Consensus 385 lhg~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR 463 (618)
T 2whx_A 385 LSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 463 (618)
T ss_dssp ECTTTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred EChHHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCC
Confidence 78999999999999999997 8887 888899999999999999766
Q ss_pred ----cceEEEEec---ccCHHHHHHHHHHHHhccCcchHH
Q 042373 331 ----KSCAFRFIS---EENAIYATDLVKAFELSELVVRDD 363 (494)
Q Consensus 331 ----~G~aitfv~---~~~~~~~~~i~~~l~~~~~~vp~~ 363 (494)
.|.||+|++ +.+...+..+++.+......+|..
T Consensus 464 ~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~ 503 (618)
T 2whx_A 464 NPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEG 503 (618)
T ss_dssp CTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTC
T ss_pred CCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcc
Confidence 568999998 788888899998887777777653
No 22
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=285.19 Aligned_cols=177 Identities=29% Similarity=0.411 Sum_probs=156.2
Q ss_pred CceeccCCCCCC---CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHH
Q 042373 108 DLKIREKCAPKP---IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRH 182 (494)
Q Consensus 108 ~i~v~g~~~P~p---i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~ 182 (494)
.+.+.+.+.+.| +.+|++++|++.++++|..+||..|||+|.++||.++.| +|+|++||||||||++|++|++++
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 466777666655 688999999999999999999999999999999999998 999999999999999999999998
Q ss_pred HHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------------------------hhhhHHHHHHHhcC
Q 042373 183 IWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------------------------VRRGRMIDLLCKNG 225 (494)
Q Consensus 183 l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------------------------~TPgrl~dll~~~~ 225 (494)
+.... .+|++|||+|||+||.|+ +||++|.+++.+.
T Consensus 156 l~~~~------~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~- 228 (300)
T 3fmo_B 156 VEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL- 228 (300)
T ss_dssp CCTTS------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-
T ss_pred hhccC------CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-
Confidence 75432 278999999999999997 7999999999753
Q ss_pred cceecccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 226 VKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 226 ~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
+.++++++++|||||||+|++ ++|...+..|+..+++.+|+++||||++..+..+++..-...+.|
T Consensus 229 -~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i 295 (300)
T 3fmo_B 229 -KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295 (300)
T ss_dssp -CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEE
T ss_pred -CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEE
Confidence 346789999999999999998 799999999999999999999999999999999998744434433
No 23
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.4e-34 Score=317.31 Aligned_cols=171 Identities=19% Similarity=0.277 Sum_probs=130.3
Q ss_pred hcccccccccccchhhhhcCH-HHH---hhcCcee-ccCCCCCCCCCcccCCCCHHHHHHHH--------hCCCCCCChh
Q 042373 81 DYQQLRKNFYTQAREITRMSP-AYR---KQLDLKI-REKCAPKPIKTWRQTGLTTKILETFS--------KLNHENPVAI 147 (494)
Q Consensus 81 ~~~~~~k~~~~~~~~~~~~s~-~~r---~~~~i~v-~g~~~P~pi~~f~~l~L~~~ll~~l~--------~~g~~~ptpi 147 (494)
.|.++-+.++...+.+..+|. +++ .++...+ .|. + |++.+.+++. .+|| .|||+
T Consensus 21 ~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~-------~-----ld~~l~ea~a~vrea~~r~lG~-~pt~V 87 (844)
T 1tf5_A 21 RYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA-------T-----TDDLLVEAFAVVREASRRVTGM-FPFKV 87 (844)
T ss_dssp HHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC-------C-----HHHHHHHHHHHHHHHHHHHHSC-CCCHH
T ss_pred HHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC-------C-----hHHHHHHHHHHHHHHHHHHcCC-CCcHH
Confidence 466666777777777777777 332 2222222 232 1 2222333332 5899 99999
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------------
Q 042373 148 QAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------------- 211 (494)
Q Consensus 148 Q~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------------- 211 (494)
|..++|.++.|+ |+.++||+|||++|+||++.+.+. ++.++||+|||+||.|+
T Consensus 88 Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 88 QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 999999999999 999999999999999999965432 66899999999999997
Q ss_pred ---------------------hhhhHH-HHHHHhcC---cceecccceEEEEEcccchhc-ccC---------------C
Q 042373 212 ---------------------VRRGRM-IDLLCKNG---VKITNLTRVTYLVLDEADRMF-DMG---------------F 250 (494)
Q Consensus 212 ---------------------~TPgrl-~dll~~~~---~~~~~l~~l~~lVlDEaD~ml-~~g---------------f 250 (494)
+||+|| .|+|..+- ...+.++.+.|+||||||+|| |++ |
T Consensus 157 ~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 157 LNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp ECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 799999 77776531 123568999999999999998 775 6
Q ss_pred hhHHHHHHHhhc---------CCCcEE-----------------EecCCCC
Q 042373 251 EPQITRIVQNIR---------PDRQAV-----------------LFSPTFP 275 (494)
Q Consensus 251 ~~~i~~Il~~l~---------~~~Q~i-----------------lfSAT~~ 275 (494)
..++..|+..++ +.+|++ +||||++
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~ 287 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHV 287 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGH
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccc
Confidence 688999999997 478888 9999965
No 24
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.4e-33 Score=311.42 Aligned_cols=209 Identities=17% Similarity=0.175 Sum_probs=185.5
Q ss_pred CcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 122 ~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
+|++++|++.+.+.+++.||..|+|+|.++++. ++.|++++++||||||||++|.+|+++.+... +.++||
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEEEE
Confidence 699999999999999999999999999999998 89999999999999999999999999988742 578999
Q ss_pred EccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh
Q 042373 201 MAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m 245 (494)
++|+|+||.|+ +||+++..++... ...++++++||+||||++
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~---~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG---SSWIKDVKILVADEIHLI 150 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHT---CTTGGGEEEEEEETGGGG
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcC---hhhhhcCCEEEEECCccc
Confidence 99999999997 7999998888763 234889999999999999
Q ss_pred cccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------------
Q 042373 246 FDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------- 284 (494)
.++++...+..++..++...|+|++|||+++. ..++..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 99899999999999998889999999998531 111100
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 230 ~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 230 VYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp HHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence
Q ss_pred --------cCCccceeeccccccCCCCCCceEEEe----cC----CCCCHhHHHhhhccCCC-----cceEEEEecccC
Q 042373 285 --------TNVCNLSIANSVRARGLDEKELELVIN----FD----APNDYEDYVHHCCQSWL-----KSCAFRFISEEN 342 (494)
Q Consensus 285 --------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd----~P~s~~~yvhR~GRaGr-----~G~aitfv~~~~ 342 (494)
.|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+||+|| .|.||.|+++.+
T Consensus 310 ~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 310 VLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 578899999999999999999999999 87 68999999999999998 467999998877
No 25
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=269.02 Aligned_cols=178 Identities=37% Similarity=0.591 Sum_probs=154.4
Q ss_pred ccCCCCCCCCCccc-CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC
Q 042373 112 REKCAPKPIKTWRQ-TGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190 (494)
Q Consensus 112 ~g~~~P~pi~~f~~-l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~ 190 (494)
.+...|.|+.+|.+ +++++.++++|.++||.+|+|+|.++|+.+++|+|++++||||||||++|++|++.++.......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 35678999999999 89999999999999999999999999999999999999999999999999999999986543222
Q ss_pred CCCCCCeEEEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceeccc
Q 042373 191 PGDDSPVGLVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 191 ~~~~~p~aLIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~ 232 (494)
....++++||++|||+|+.|+ +||+++.+++... ...++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~---~~~~~ 166 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN---SVNLR 166 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT---CCCCT
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcCcc
Confidence 223478999999999999997 7999999988764 34688
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
++++||+||||+|++++|...+..++..+++++|+++||||+|+.+..+++..-...+.|
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 999999999999999999999999999999999999999999999999987644444433
No 26
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.3e-33 Score=326.04 Aligned_cols=202 Identities=22% Similarity=0.244 Sum_probs=171.8
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
.+|| +|||+|.++||.++.|+|++++||||||||++|++|++..+. .++++|||+|||+||.|+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHHHHHHHHT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHHHHHHHHHH
Confidence 4788 699999999999999999999999999999999988888762 178999999999999997
Q ss_pred ------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc----------hh
Q 042373 212 ------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD----------RM 245 (494)
Q Consensus 212 ------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD----------~m 245 (494)
+||++|.+++.. +.++++++||||||| +|
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccchhh
Confidence 688888887763 467899999999995 56
Q ss_pred cc-cCChhH-HHHHHHhhc-----------CCCcEEEecCC-CChHHHHH-HHh--------------------------
Q 042373 246 FD-MGFEPQ-ITRIVQNIR-----------PDRQAVLFSPT-FPPRVEIL-ARK-------------------------- 284 (494)
Q Consensus 246 l~-~gf~~~-i~~Il~~l~-----------~~~Q~ilfSAT-~~~~v~~l-~~~-------------------------- 284 (494)
++ +||.++ +..++..++ .++|+++|||| +|..+... .+.
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~k~ 298 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSK 298 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCCCH
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecCHH
Confidence 66 999999 899999988 88999999999 56544321 111
Q ss_pred -----------------------------------------------------cCCccceee----ccccccCCCCCC-c
Q 042373 285 -----------------------------------------------------TNVCNLSIA----NSVRARGLDEKE-L 306 (494)
Q Consensus 285 -----------------------------------------------------~g~~~ILVa----Tdv~~rGlDi~~-v 306 (494)
.|+++|||| |++++||||+|+ |
T Consensus 299 ~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~l~~F~~G~~~VLVatas~TdvlarGIDip~~V 378 (1104)
T 4ddu_A 299 EKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERI 378 (1104)
T ss_dssp HHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHHHHHHHHTSCSEEEEETTTHHHHCCSCCCTTTC
T ss_pred HHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHHHHHHHCCCCCEEEEecCCCCeeEecCcCCCCC
Confidence 367899999 999999999999 9
Q ss_pred eEEEecCCCC----------------------------------------------------------------------
Q 042373 307 ELVINFDAPN---------------------------------------------------------------------- 316 (494)
Q Consensus 307 ~~VInyd~P~---------------------------------------------------------------------- 316 (494)
++|||||+|.
T Consensus 379 ~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~ 458 (1104)
T 4ddu_A 379 KYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELI 458 (1104)
T ss_dssp CEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEE
T ss_pred CEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEE
Confidence 9999999998
Q ss_pred --CHhHHHhhhccCCCcc-----eEEEEecccCHHHHHHHHHHHH
Q 042373 317 --DYEDYVHHCCQSWLKS-----CAFRFISEENAIYATDLVKAFE 354 (494)
Q Consensus 317 --s~~~yvhR~GRaGr~G-----~aitfv~~~~~~~~~~i~~~l~ 354 (494)
+..+|+||+||+||-| .+++++..++...++.|.+.++
T Consensus 459 ~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 459 IPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp EECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred ecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999988821 3555555588889999998886
No 27
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=267.52 Aligned_cols=185 Identities=29% Similarity=0.466 Sum_probs=162.8
Q ss_pred HHHhhcCceeccCCCCCCCCCcccC----CCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHH
Q 042373 102 AYRKQLDLKIREKCAPKPIKTWRQT----GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 102 ~~r~~~~i~v~g~~~P~pi~~f~~l----~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafll 177 (494)
.+|++..+.+.|.+.|.|+.+|+++ +|++.+++.|.++||..|+|+|.++|+.+++|+|++++||||||||++|++
T Consensus 6 ~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l 85 (245)
T 3dkp_A 6 FLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 85 (245)
T ss_dssp HHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 6788889999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------------------------------------hhhhHH
Q 042373 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------------------------------------VRRGRM 217 (494)
Q Consensus 178 pil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------------------------------------~TPgrl 217 (494)
|++.++... ...++++||++|||+|+.|+ +||++|
T Consensus 86 ~~l~~l~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l 160 (245)
T 3dkp_A 86 PILMQLKQP-----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRL 160 (245)
T ss_dssp HHHHHHCSC-----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHH
T ss_pred HHHHHHhhc-----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHH
Confidence 999998542 12377999999999999998 799999
Q ss_pred HHHHHhcCcceecccceEEEEEcccchhcc---cCChhHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 218 IDLLCKNGVKITNLTRVTYLVLDEADRMFD---MGFEPQITRIVQNIR-PDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 218 ~dll~~~~~~~~~l~~l~~lVlDEaD~ml~---~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
.+++.... ....++++++||+||||+|++ .+|...+..++..+. +..|+++||||+|+.+..+++..-...+.|
T Consensus 161 ~~~l~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 161 IYLLKQDP-PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHSSS-CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHhCC-CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 99997643 235789999999999999998 578899999987764 578999999999999999988754444444
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.7e-32 Score=294.52 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=102.6
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
++..+|+|+|.++|+.++.|+|+|+++|||||||++|++|+++.+...+. ..++++|||+||++|+.|+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999876432 1267899999999999997
Q ss_pred --------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHH-HHH
Q 042373 212 --------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQIT-RIV 258 (494)
Q Consensus 212 --------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~-~Il 258 (494)
+||++|.+++..+. ...+.++++|||||||++.++++...+. .++
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 156 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 156 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHHHHHH
Confidence 79999999987642 2268899999999999999887544432 222
Q ss_pred Hh-h---cCCCcEEEecCCC
Q 042373 259 QN-I---RPDRQAVLFSPTF 274 (494)
Q Consensus 259 ~~-l---~~~~Q~ilfSAT~ 274 (494)
.. + .+..|+++||||+
T Consensus 157 ~~~~~~~~~~~~~l~lSAT~ 176 (556)
T 4a2p_A 157 EQKFNSASQLPQILGLTASV 176 (556)
T ss_dssp HHHHCC---CCEEEEEESCC
T ss_pred HhhhcccCCCCeEEEEeCCc
Confidence 22 2 3568999999998
No 29
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.5e-32 Score=304.81 Aligned_cols=211 Identities=16% Similarity=0.211 Sum_probs=180.2
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
..+|++++|++.+.+.+++.||..|+|+|.++++. ++.|++++++||||||||++|.+|+++.+... +.++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~i 78 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--------GGKA 78 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------CSEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--------CCeE
Confidence 46799999999999999999999999999999999 88999999999999999999999999988643 5689
Q ss_pred EEEccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc
Q 042373 199 LVMAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD 243 (494)
Q Consensus 199 LIl~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD 243 (494)
||++|+|+||.|+ +||+++..++.... ..++++++||+||||
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRP---EWLNEVNYFVLDELH 155 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCC---GGGGGEEEEEECSGG
T ss_pred EEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCCh---hHhhccCEEEEechh
Confidence 9999999999997 79999998887632 348899999999999
Q ss_pred hhcccCChhHHHHHHHhhcCCCcEEEecCCCChH----------------------------------------------
Q 042373 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPR---------------------------------------------- 277 (494)
Q Consensus 244 ~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~---------------------------------------------- 277 (494)
++.+.++...++.++..++ +.|+|++|||+++.
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhh
Confidence 9998889999999998887 89999999998620
Q ss_pred ------HHHHHH-------------------------------------------------------------------h
Q 042373 278 ------VEILAR-------------------------------------------------------------------K 284 (494)
Q Consensus 278 ------v~~l~~-------------------------------------------------------------------~ 284 (494)
...+.. .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 314 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKG 314 (715)
T ss_dssp EESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTT
T ss_pred cccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcC
Confidence 000000 0
Q ss_pred ---------------------cCCccceeeccccccCCCCCCceEEEe----cC-------CCCCHhHHHhhhccCCC--
Q 042373 285 ---------------------TNVCNLSIANSVRARGLDEKELELVIN----FD-------APNDYEDYVHHCCQSWL-- 330 (494)
Q Consensus 285 ---------------------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd-------~P~s~~~yvhR~GRaGr-- 330 (494)
.|..+|||||+++++|||+|++++||+ || .|.+..+|+||+||+||
T Consensus 315 v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g 394 (715)
T 2va8_A 315 VAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPG 394 (715)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTT
T ss_pred EEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCC
Confidence 478899999999999999999999999 99 89999999999999998
Q ss_pred ---cceEEEEecccC
Q 042373 331 ---KSCAFRFISEEN 342 (494)
Q Consensus 331 ---~G~aitfv~~~~ 342 (494)
.|.||.|+++.+
T Consensus 395 ~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 395 FDQIGESIVVVRDKE 409 (715)
T ss_dssp TCSCEEEEEECSCGG
T ss_pred CCCCceEEEEeCCch
Confidence 467999988765
No 30
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=9.5e-33 Score=307.89 Aligned_cols=209 Identities=16% Similarity=0.203 Sum_probs=180.1
Q ss_pred CcccCC--CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 122 TWRQTG--LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 122 ~f~~l~--L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
+|++++ |++.+.+.++++||..|+|+|.++++.++.|+|++++||||||||++|.+|+++.+.. +.++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l 72 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSL 72 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEE
Confidence 688888 9999999999999999999999999999999999999999999999999999998763 56899
Q ss_pred EEccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 200 VMAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 200 Il~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
|++|+|+||.|+ +||+++..++.... ..++++++||+||||+
T Consensus 73 ~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETTGGG
T ss_pred EEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcCh---hHHhhcCEEEEeeeee
Confidence 999999999997 79999988887632 3488999999999999
Q ss_pred hcccCChhHHHHHHHhh---cCCCcEEEecCCCChHHHHHHH--------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNI---RPDRQAVLFSPTFPPRVEILAR-------------------------------------- 283 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l---~~~~Q~ilfSAT~~~~v~~l~~-------------------------------------- 283 (494)
+.++++...+..++..+ +++.|+|++|||+++. ..++.
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~-~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNV-TEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTH-HHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCH-HHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhh
Confidence 99988888888887766 5789999999998720 00000
Q ss_pred ---------------------------------------------------------------------h----------
Q 042373 284 ---------------------------------------------------------------------K---------- 284 (494)
Q Consensus 284 ---------------------------------------------------------------------~---------- 284 (494)
.
T Consensus 229 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 308 (702)
T 2p6r_A 229 VKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 308 (702)
T ss_dssp CCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCH
Confidence 0
Q ss_pred -----------cCCccceeeccccccCCCCCCceEEEe----cC---CCCCHhHHHhhhccCCC-----cceEEEEeccc
Q 042373 285 -----------TNVCNLSIANSVRARGLDEKELELVIN----FD---APNDYEDYVHHCCQSWL-----KSCAFRFISEE 341 (494)
Q Consensus 285 -----------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd---~P~s~~~yvhR~GRaGr-----~G~aitfv~~~ 341 (494)
.|..+|||||+++++|||+|++++||+ || .|.+..+|+||+||+|| .|.||.|+++.
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 578899999999999999999999999 77 78999999999999988 46799998877
Q ss_pred CH
Q 042373 342 NA 343 (494)
Q Consensus 342 ~~ 343 (494)
+.
T Consensus 389 ~~ 390 (702)
T 2p6r_A 389 DR 390 (702)
T ss_dssp GH
T ss_pred cH
Confidence 63
No 31
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4e-34 Score=303.68 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=162.0
Q ss_pred CCCCCChhHHHHHHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 140 NHENPVAIQAPASALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
|+..|+|+|+ +||.+++|+|+ +++||||||||++|++|++.++... ++++||++|||+||.|+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--------~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--------RLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--------CCcEEEECCCHHHHHHHHHHhcCc
Confidence 7899999986 79999999988 8889999999999999999887653 67999999999999998
Q ss_pred ---------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh-hcCCCcEEE
Q 042373 212 ---------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN-IRPDRQAVL 269 (494)
Q Consensus 212 ---------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~-l~~~~Q~il 269 (494)
+|++.+...+... ..++++++||+||||++ +.++...+..+... .++++|+++
T Consensus 72 ~v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~ 146 (451)
T 2jlq_A 72 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIF 146 (451)
T ss_dssp CEEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred eeeeeeccccccCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEE
Confidence 5677777766542 35889999999999987 55444444444333 356899999
Q ss_pred ecCCCChHHHHHHHh-----------------------------------------------------------------
Q 042373 270 FSPTFPPRVEILARK----------------------------------------------------------------- 284 (494)
Q Consensus 270 fSAT~~~~v~~l~~~----------------------------------------------------------------- 284 (494)
||||++..+..+...
T Consensus 147 ~SAT~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~ 226 (451)
T 2jlq_A 147 MTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE 226 (451)
T ss_dssp ECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHH
T ss_pred EccCCCccchhhhcCCCceEecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHH
Confidence 999987543221110
Q ss_pred -----cCCccceeeccccccCCCCCCceEEEecC--------------------CCCCHhHHHhhhccCCCc----ceEE
Q 042373 285 -----TNVCNLSIANSVRARGLDEKELELVINFD--------------------APNDYEDYVHHCCQSWLK----SCAF 335 (494)
Q Consensus 285 -----~g~~~ILVaTdv~~rGlDi~~v~~VInyd--------------------~P~s~~~yvhR~GRaGr~----G~ai 335 (494)
.|+.+|||||++++||||+|+ ++||||| +|.+..+|+||+||+||. |.++
T Consensus 227 ~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~ 305 (451)
T 2jlq_A 227 YPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQY 305 (451)
T ss_dssp GGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred HHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEE
Confidence 789999999999999999999 9999999 999999999999998774 4677
Q ss_pred EEecccC---HHHHHHHHHHHHhccCcchHHH
Q 042373 336 RFISEEN---AIYATDLVKAFELSELVVRDDL 364 (494)
Q Consensus 336 tfv~~~~---~~~~~~i~~~l~~~~~~vp~~l 364 (494)
.|+...+ ......+...+...+..+|.++
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 306 VFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred EEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 7764331 1222222344445566666543
No 32
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.98 E-value=5.4e-32 Score=289.87 Aligned_cols=127 Identities=20% Similarity=0.201 Sum_probs=104.0
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
+|+|+|.++|+.++.|+|+|+++|||||||++|++|+++.+...+. ..++++|||+||++|+.|+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 7999999999999999999999999999999999999999876532 2267899999999999997
Q ss_pred ----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCCh-hHHHHHHHhh-
Q 042373 212 ----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFE-PQITRIVQNI- 261 (494)
Q Consensus 212 ----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~-~~i~~Il~~l- 261 (494)
+||++|.+++..+. ...+.++++|||||||++...+.. ..+..++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 79999999987643 226889999999999999987532 2232333332
Q ss_pred ----cCCCcEEEecCCCC
Q 042373 262 ----RPDRQAVLFSPTFP 275 (494)
Q Consensus 262 ----~~~~Q~ilfSAT~~ 275 (494)
.+..|+++||||++
T Consensus 158 ~~~~~~~~~~l~lSAT~~ 175 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVG 175 (555)
T ss_dssp SSCCSCCCEEEEEESCCC
T ss_pred ccccCCCCeEEEEecCcc
Confidence 25679999999983
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.98 E-value=2.9e-32 Score=316.16 Aligned_cols=213 Identities=19% Similarity=0.233 Sum_probs=172.3
Q ss_pred CcccCCCCHHHH-----HHHH-hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 122 TWRQTGLTTKIL-----ETFS-KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 122 ~f~~l~L~~~ll-----~~l~-~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
.|..+++++.+. +.+. .+||. | |+|.++||.++.|+|+|++||||||||+ |++|++.++... +
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--------~ 99 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--------G 99 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--------S
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--------C
Confidence 344555554433 3343 48999 9 9999999999999999999999999998 999999988652 6
Q ss_pred CeEEEEccchhHHHhh---------------------------------------------hhhhHHHHHHHhcCcceec
Q 042373 196 PVGLVMAPTGELVRQQ---------------------------------------------VRRGRMIDLLCKNGVKITN 230 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi---------------------------------------------~TPgrl~dll~~~~~~~~~ 230 (494)
+++|||+|||+||.|+ +||++|.+++..
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------- 172 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------- 172 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT-------
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH-------
Confidence 8999999999999997 366776665542
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhh-----------cCCCcEEEecCCCChHHH----HHHHh-----------
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNI-----------RPDRQAVLFSPTFPPRVE----ILARK----------- 284 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-----------~~~~Q~ilfSAT~~~~v~----~l~~~----------- 284 (494)
|+++++|||||||+|++ |..++..++..+ +..+|+++||||++.. . .+...
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~ 249 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRI 249 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEE
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCccc
Confidence 66899999999999998 567788887766 3578999999999876 3 22221
Q ss_pred -------------------------------------------------------------------cCCccceee----
Q 042373 285 -------------------------------------------------------------------TNVCNLSIA---- 293 (494)
Q Consensus 285 -------------------------------------------------------------------~g~~~ILVa---- 293 (494)
.|.++||||
T Consensus 250 ~~~~i~~~~~~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~~~l~~F~~G~~~VLVaTas~ 329 (1054)
T 1gku_B 250 TVRNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHY 329 (1054)
T ss_dssp CCCCEEEEEESCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC-
T ss_pred CcCCceEEEechhHHHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHHHHHHHHHcCCCcEEEEecCC
Confidence 689999999
Q ss_pred ccccccCCCCCCc-eEEEecCCC---------------------------------------------------------
Q 042373 294 NSVRARGLDEKEL-ELVINFDAP--------------------------------------------------------- 315 (494)
Q Consensus 294 Tdv~~rGlDi~~v-~~VInyd~P--------------------------------------------------------- 315 (494)
|++++||||+|+| ++|||||+|
T Consensus 330 Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (1054)
T 1gku_B 330 YGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERP 409 (1054)
T ss_dssp -----CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCC
T ss_pred CCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999996 999999999
Q ss_pred --------------CCHhHHHhhhccCCC---cc--eEEEEecccCHHHHHHHHHHHHh
Q 042373 316 --------------NDYEDYVHHCCQSWL---KS--CAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 316 --------------~s~~~yvhR~GRaGr---~G--~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
.+..+|+||+||+|| .| .+++|+...+...+..|.+.++.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 410 QAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 789999999999888 44 48999999999999999999885
No 34
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=3.9e-32 Score=265.37 Aligned_cols=185 Identities=34% Similarity=0.510 Sum_probs=160.1
Q ss_pred hcCceeccCCCCC--CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 106 QLDLKIREKCAPK--PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 106 ~~~i~v~g~~~P~--pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
++.+.+.|...|. ++.+|++++|++.++++|.++||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4457888999998 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCCCCC---CCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHH
Q 042373 184 WEQPPVV---PGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLL 221 (494)
Q Consensus 184 ~~~~~~~---~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll 221 (494)
....... ....++++|||+|||+|+.|+ +||++|.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 7643210 112368999999999999997 7999999998
Q ss_pred HhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh--cC--CCcEEEecCCCChHHHHHHHhcCCccceee
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RP--DRQAVLFSPTFPPRVEILARKTNVCNLSIA 293 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l--~~--~~Q~ilfSAT~~~~v~~l~~~~g~~~ILVa 293 (494)
..+. ..++++++||+||||+|++++|...+..|+..+ +. .+|+++||||+++.+..+++..-...+.|.
T Consensus 166 ~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 238 (253)
T 1wrb_A 166 EKNK---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMT 238 (253)
T ss_dssp HTTS---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEE
T ss_pred HcCC---CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 8643 468899999999999999999999999999954 33 789999999999999999987544444443
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.2e-31 Score=297.58 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=103.7
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-
Q 042373 133 LETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ- 211 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi- 211 (494)
..+|..+||.+|+|+|.++|+.++.|+|+|+++|||||||++|++|+++++...+. ..++++|||+||++|+.|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999998876431 1146899999999999997
Q ss_pred --------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC-hh
Q 042373 212 --------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF-EP 252 (494)
Q Consensus 212 --------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf-~~ 252 (494)
+||++|.+.+..+. ...++++++|||||||++..... ..
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vViDEaH~~~~~~~~~~ 156 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQHPYNM 156 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred HHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEEEeCCCcccCcccHHH
Confidence 79999999988642 22688999999999999875431 11
Q ss_pred HHHHHHHh-----hcCCCcEEEecCCCC
Q 042373 253 QITRIVQN-----IRPDRQAVLFSPTFP 275 (494)
Q Consensus 253 ~i~~Il~~-----l~~~~Q~ilfSAT~~ 275 (494)
.+...+.. .++..|++++|||+.
T Consensus 157 i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 157 IMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 22222221 135677888888865
No 36
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=1.4e-31 Score=259.59 Aligned_cols=174 Identities=30% Similarity=0.422 Sum_probs=149.6
Q ss_pred eeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCC
Q 042373 110 KIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPV 189 (494)
Q Consensus 110 ~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~ 189 (494)
.+...+.|.++.+|++++|++.++++|.++||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+...
T Consensus 19 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--- 95 (237)
T 3bor_A 19 GVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--- 95 (237)
T ss_dssp --------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---
T ss_pred CcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCCCCCeEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCccee
Q 042373 190 VPGDDSPVGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKIT 229 (494)
Q Consensus 190 ~~~~~~p~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~ 229 (494)
..++++||++|||+|+.|+ +||++|.+++..+ ..
T Consensus 96 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~---~~ 169 (237)
T 3bor_A 96 ---FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR---YL 169 (237)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT---SS
T ss_pred ---CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC---Cc
Confidence 1267899999999999997 6999999998764 34
Q ss_pred cccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 230 NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 230 ~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
.+.++++||+||||+|++++|...+..++..++..+|+++||||+|+.+..+++..-...+.|
T Consensus 170 ~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i 232 (237)
T 3bor_A 170 SPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232 (237)
T ss_dssp CSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred CcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEE
Confidence 688999999999999999999999999999999999999999999999999987743334333
No 37
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=3e-31 Score=255.95 Aligned_cols=164 Identities=26% Similarity=0.343 Sum_probs=142.7
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC
Q 042373 112 REKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP 191 (494)
Q Consensus 112 ~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~ 191 (494)
.+...|.+..+|++++|++.+++.|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+....
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---- 90 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---- 90 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----
Confidence 3567788899999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceeccc
Q 042373 192 GDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 192 ~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~ 232 (494)
.++++||++|||+|+.|+ +||++|.+++..+ ...++
T Consensus 91 --~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~---~~~~~ 165 (230)
T 2oxc_A 91 --LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELD---YLNPG 165 (230)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTT---SSCGG
T ss_pred --CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcC---Ccccc
Confidence 267999999999999997 7999999988764 34688
Q ss_pred ceEEEEEcccchhcccC-ChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 233 RVTYLVLDEADRMFDMG-FEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
++++||+||||+|+++| |...+..|+..++..+|+++||||+++.+..++..
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~ 218 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTK 218 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTT
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999887755
No 38
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=5.4e-34 Score=316.17 Aligned_cols=218 Identities=14% Similarity=0.142 Sum_probs=167.9
Q ss_pred HHHhCCCC-----CCChhHH-----HHHHHHH------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 135 TFSKLNHE-----NPVAIQA-----PASALII------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 135 ~l~~~g~~-----~ptpiQ~-----~aip~il------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
+|..+||. .||+||+ ++||.++ .|+|+|++|+||||||++|++|+++.+... ++++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--------~~~~ 273 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--------RLRT 273 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--------TCCE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--------CCcE
Confidence 45567877 9999999 9999998 999999999999999999999999987653 6799
Q ss_pred EEEccchhHHHhh-------------------hhhhHHHHHHHhcCc-----ceecccceEEEEEcccchhcccCChhHH
Q 042373 199 LVMAPTGELVRQQ-------------------VRRGRMIDLLCKNGV-----KITNLTRVTYLVLDEADRMFDMGFEPQI 254 (494)
Q Consensus 199 LIl~PTreLa~Qi-------------------~TPgrl~dll~~~~~-----~~~~l~~l~~lVlDEaD~ml~~gf~~~i 254 (494)
|||+|||+||.|+ +||+++++++..+.. ....++++++||+||||+| +..+...+
T Consensus 274 lilaPTr~La~Q~~~~l~~~~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~~~~~~~~ 352 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT-DPASIAAR 352 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTSCCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC-CHHHHHHH
T ss_pred EEEccHHHHHHHHHHHHhcCCeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc-CccHHHHH
Confidence 9999999999998 467665543332210 0125789999999999998 33333344
Q ss_pred HHHHHhhc-CCCcEEEecCCCChHHHHHHHh-------------------------------------------------
Q 042373 255 TRIVQNIR-PDRQAVLFSPTFPPRVEILARK------------------------------------------------- 284 (494)
Q Consensus 255 ~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------- 284 (494)
..+...++ ..+|+++||||+++.+..+...
T Consensus 353 ~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~~~~i~~v~~~~~~~~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~ 432 (673)
T 2wv9_A 353 GYIATRVEAGEAAAIFMTATPPGTSDPFPDTNSPVHDVSSEIPDRAWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQR 432 (673)
T ss_dssp HHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHhccccCCcEEEEcCCCChhhhhhcccCCceEEEeeecCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHh
Confidence 44444443 6899999999987665433321
Q ss_pred ---------------------cCCccceeeccccccCCCCCCceEEEe--------------------cCCCCCHhHHHh
Q 042373 285 ---------------------TNVCNLSIANSVRARGLDEKELELVIN--------------------FDAPNDYEDYVH 323 (494)
Q Consensus 285 ---------------------~g~~~ILVaTdv~~rGlDi~~v~~VIn--------------------yd~P~s~~~yvh 323 (494)
.|+.+|||||+++++|||+| +++||| ||+|.+..+|+|
T Consensus 433 ~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Q 511 (673)
T 2wv9_A 433 AGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQ 511 (673)
T ss_dssp TTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHH
T ss_pred CCCeEEEeChHHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHH
Confidence 68999999999999999999 999998 679999999999
Q ss_pred hhccCCC----cceEEEEe---cccCHHHHHHHHHHHHhccCcchH
Q 042373 324 HCCQSWL----KSCAFRFI---SEENAIYATDLVKAFELSELVVRD 362 (494)
Q Consensus 324 R~GRaGr----~G~aitfv---~~~~~~~~~~i~~~l~~~~~~vp~ 362 (494)
|+||+|| .|.||+|+ ++.+..++..++..+......++.
T Consensus 512 r~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~ 557 (673)
T 2wv9_A 512 RRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPN 557 (673)
T ss_dssp HHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBTT
T ss_pred HhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCCc
Confidence 9999665 57889996 577777777777766555545543
No 39
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=5.8e-33 Score=294.03 Aligned_cols=200 Identities=19% Similarity=0.216 Sum_probs=158.7
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------hhh
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------VRR 214 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------~TP 214 (494)
.+++|+|++++||||||||++|++|+++.+... ++++||++|||+||.|+ +||
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--------~~~~lil~Ptr~La~Q~~~~l~~~~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--------CCeEEEEcchHHHHHHHHHHHhcCCeEEecccceeccCC
Confidence 357899999999999999999999999988653 67999999999999998 677
Q ss_pred hHHHHHHHhcCc-----ceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecCCCChHHHHHHHh----
Q 042373 215 GRMIDLLCKNGV-----KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRVEILARK---- 284 (494)
Q Consensus 215 grl~dll~~~~~-----~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~~l~~~---- 284 (494)
+++++++..+.. ....++++++||+||||+| +.+|...+..+...+ +.++|+++||||+++.+..++..
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~ 154 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPHSNGEI 154 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCE
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhcCCCe
Confidence 776654433211 1123789999999999998 444444444444433 36799999999987665433321
Q ss_pred ------------------------------------------------------------------cCCccceeeccccc
Q 042373 285 ------------------------------------------------------------------TNVCNLSIANSVRA 298 (494)
Q Consensus 285 ------------------------------------------------------------------~g~~~ILVaTdv~~ 298 (494)
.|+.+|||||++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e 234 (440)
T 1yks_A 155 EDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAE 234 (440)
T ss_dssp EEEECCCCSSCCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTT
T ss_pred eEeeeccChHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhh
Confidence 68999999999999
Q ss_pred cCCCCCCceEEEe-------------------cCCCCCHhHHHhhhccCCC----cceEEEEe---cccCHHHHHHHHHH
Q 042373 299 RGLDEKELELVIN-------------------FDAPNDYEDYVHHCCQSWL----KSCAFRFI---SEENAIYATDLVKA 352 (494)
Q Consensus 299 rGlDi~~v~~VIn-------------------yd~P~s~~~yvhR~GRaGr----~G~aitfv---~~~~~~~~~~i~~~ 352 (494)
+|||+| +++||| |+.|.+..+|+||+||+|| .|.|++|+ ++.+...+..+.+.
T Consensus 235 ~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 235 MGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp CCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred eeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHH
Confidence 999999 999986 9999999999999999766 57899996 67788888888888
Q ss_pred HHhccCcchHH
Q 042373 353 FELSELVVRDD 363 (494)
Q Consensus 353 l~~~~~~vp~~ 363 (494)
+.....++|..
T Consensus 314 ~~~~~~~l~~~ 324 (440)
T 1yks_A 314 MLLDNMEVRGG 324 (440)
T ss_dssp HHHTTSCCGGG
T ss_pred hcccccccccc
Confidence 88777777653
No 40
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=8.9e-31 Score=252.88 Aligned_cols=171 Identities=32% Similarity=0.437 Sum_probs=151.3
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCC
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSP 196 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p 196 (494)
+.++.+|++++|++.+++.|.++||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++++..... ....++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 467889999999999999999999999999999999999999999999999999999999999999876432 112378
Q ss_pred eEEEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 197 VGLVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 197 ~aLIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
++||++|||+|+.|+ +||++|.+++.... ...+.++++||
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~--~~~~~~~~~lV 176 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETV--SFHATDLQMLV 176 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCS--SCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcC--CcccccccEEE
Confidence 999999999999997 69999999887642 34678999999
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCccce
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLS 291 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~IL 291 (494)
+||||+|++++|...+..++..+++.+|+++||||+++.+..+++..-...+.
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 229 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEY 229 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEE
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999999999999999998774333333
No 41
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=7.9e-31 Score=256.88 Aligned_cols=168 Identities=38% Similarity=0.568 Sum_probs=150.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCC
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSP 196 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p 196 (494)
+.++.+|++++|++.+++.|+++||..|+++|.++|+.++.|+|++++||||||||++|++|++.++.... .++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~------~~~ 112 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP------QRL 112 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC------CSS
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC------CCc
Confidence 34678999999999999999999999999999999999999999999999999999999999999987643 267
Q ss_pred eEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEE
Q 042373 197 VGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 197 ~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
++||++|||+|+.|+ +||++|.+++.... ...++++++|
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~~l 190 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK--GFNLRALKYL 190 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--TCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CcCccccCEE
Confidence 899999999999997 79999999887632 2468899999
Q ss_pred EEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
|+||||+|++++|...+..++..+++.+|+++||||+++.+..+++..-...+.|
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i 245 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999999999999999988744334433
No 42
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=1.2e-30 Score=249.50 Aligned_cols=171 Identities=31% Similarity=0.414 Sum_probs=153.1
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 113 EKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 113 g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
....|+++.+|++++|++.+++.|.++||..|+|+|.++++.++.|+|+++++|||||||++|++|+++++....
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~----- 80 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----- 80 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-----
Confidence 356788999999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCeEEEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccce
Q 042373 193 DDSPVGLVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l 234 (494)
.++++||++|||+|+.|+ +||++|.+++... ...++++
T Consensus 81 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~---~~~~~~~ 156 (224)
T 1qde_A 81 -KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR---RFRTDKI 156 (224)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTT---SSCCTTC
T ss_pred -CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhC---CcchhhC
Confidence 267999999999999997 7999999988764 3468899
Q ss_pred EEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 235 TYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
++||+||||++++++|...+..++..+++.+|+++||||+++.+..+++..-...+.|
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i 214 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 214 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999999999999999999988744444443
No 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=3.2e-30 Score=291.50 Aligned_cols=132 Identities=18% Similarity=0.200 Sum_probs=104.3
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
-+|+..|+|+|.++|+.++.|+|+|+++|||||||++|++|++..+...+. ..++++|||+||++|+.|+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999876531 1267899999999999997
Q ss_pred ---------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHH-HHH
Q 042373 212 ---------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQI-TRI 257 (494)
Q Consensus 212 ---------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i-~~I 257 (494)
+||++|.+++..+. ...++++++|||||||++...+....+ ..+
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~ 396 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 396 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTGGGCSTTSHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECccccCCCccHHHHHHHH
Confidence 79999999887642 226889999999999999976543333 222
Q ss_pred HHhh----cCCCcEEEecCCCC
Q 042373 258 VQNI----RPDRQAVLFSPTFP 275 (494)
Q Consensus 258 l~~l----~~~~Q~ilfSAT~~ 275 (494)
+... .+..|++++|||++
T Consensus 397 ~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 397 LEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHHTTCCCCCEEEEEESCCC
T ss_pred HHHhhccCCCCCeEEEEcCCcc
Confidence 2221 45689999999983
No 44
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=5.6e-31 Score=251.70 Aligned_cols=157 Identities=29% Similarity=0.457 Sum_probs=143.2
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
|+.+|++++|++.+++.|.++||.+|+|+|.++|+.+++|+|+++++|||||||++|++|++..+.... .++++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------~~~~~ 75 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER------AEVQA 75 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS------CSCCE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc------CCceE
Confidence 467899999999999999999999999999999999999999999999999999999999999875422 26789
Q ss_pred EEEccchhHHHhh-------------------------------------------hhhhHHHHHHHhcCcceecccceE
Q 042373 199 LVMAPTGELVRQQ-------------------------------------------VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 199 LIl~PTreLa~Qi-------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
||++|||+|+.|+ +||+++.+++..+ ...+++++
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~~~~~~ 152 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ---ALDVHTAH 152 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT---CCCGGGCC
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC---CCCcCcce
Confidence 9999999999997 7999999988764 34688999
Q ss_pred EEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 236 YLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 236 ~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
+||+||||++++++|...+..++..+++.+|+++||||+|+.+..+++.
T Consensus 153 ~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 201 (219)
T 1q0u_A 153 ILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKK 201 (219)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHH
T ss_pred EEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988876
No 45
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=2.4e-30 Score=244.00 Aligned_cols=155 Identities=30% Similarity=0.518 Sum_probs=142.3
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++++|++.+++.|.++||.+|+|+|.++++.++.|+|+++++|||||||++|++|++.++... ..++++||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~~~li 76 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQAMV 76 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT------SCSCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc------CCCeeEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987432 22678999
Q ss_pred EccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 201 MAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 201 l~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
++||++|+.|+ +||+++.+++..+ ...++++++||+|
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~lViD 153 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG---VAKVDHVQMIVLD 153 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---CSCCTTCCEEEEE
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC---CcCcccCCEEEEE
Confidence 99999999997 6899999888764 3468899999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
|||+|++.+|...+..++..+++.+|+++||||+|+.+..+++.
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 197 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNS 197 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred ChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHH
Confidence 99999999999999999999998999999999999999988876
No 46
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=257.02 Aligned_cols=160 Identities=32% Similarity=0.476 Sum_probs=141.3
Q ss_pred CCcccCC--CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 121 KTWRQTG--LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 121 ~~f~~l~--L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.+|++++ |++.+++.|+++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+...... ...++++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~~ 129 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTGV 129 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCCE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCceE
Confidence 4577777 99999999999999999999999999999999999999999999999999999998764321 1227789
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||+|||+||.|+ +||+++.+++.... ...++++++||+
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~--~~~~~~l~~lVi 207 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP--GFMYKNLQCLVI 207 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT--TCCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC--CcccccCCEEEE
Confidence 9999999999997 79999999887643 246889999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
||||+|++++|...+..|+..++..+|+++||||+++.+..+++.
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHH
T ss_pred cChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.97 E-value=6.4e-30 Score=284.63 Aligned_cols=127 Identities=22% Similarity=0.318 Sum_probs=110.4
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
.+|+ .||++|..++|.++.|+ |+.++||+|||++|.+|++...+. |..++||+|||+||.|+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHHH
Confidence 4899 99999999999999999 999999999999999999865543 56799999999999997
Q ss_pred -------------------------------hhhhHH-HHHHHhcC---cceecccceEEEEEcccchhc-c--------
Q 042373 212 -------------------------------VRRGRM-IDLLCKNG---VKITNLTRVTYLVLDEADRMF-D-------- 247 (494)
Q Consensus 212 -------------------------------~TPgrl-~dll~~~~---~~~~~l~~l~~lVlDEaD~ml-~-------- 247 (494)
+||++| .|+|..+- .....++.+.|+||||||+|| |
T Consensus 175 l~~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLii 254 (922)
T 1nkt_A 175 VHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLII 254 (922)
T ss_dssp HHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEE
T ss_pred HHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceee
Confidence 799999 88887641 124568899999999999999 5
Q ss_pred -------cCChhHHHHHHHhhc---------CCCcEE-----------------EecCCCCh
Q 042373 248 -------MGFEPQITRIVQNIR---------PDRQAV-----------------LFSPTFPP 276 (494)
Q Consensus 248 -------~gf~~~i~~Il~~l~---------~~~Q~i-----------------lfSAT~~~ 276 (494)
++|...+..|+..++ +.+|++ +||||++.
T Consensus 255 Sg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 255 SGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp EEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred cCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 358889999999997 689999 99999864
No 48
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=5.7e-30 Score=241.29 Aligned_cols=166 Identities=36% Similarity=0.542 Sum_probs=147.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++++|++.+++.|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++.++..... ...++++||
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~---~~~~~~~li 77 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE---RGRKPRALV 77 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC---TTCCCSEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCcEEE
Confidence 36999999999999999999999999999999999999999999999999999999999998864321 123789999
Q ss_pred EccchhHHHhh-------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc
Q 042373 201 MAPTGELVRQQ-------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD 243 (494)
Q Consensus 201 l~PTreLa~Qi-------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD 243 (494)
++|||+|+.|+ +||+++.+++..+ ...++++++||+||||
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---VLDLSRVEVAVLDEAD 154 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT---SSCCTTCSEEEEESHH
T ss_pred EECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC---CcchhhceEEEEEChh
Confidence 99999999997 6899999988874 3468899999999999
Q ss_pred hhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 244 ~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
++++++|...+..++..+++.+|+++||||+++.+..+++......++|
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 203 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999999999999999999999887744434433
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=292.12 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=115.4
Q ss_pred HhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 137 SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 137 ~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
..++|. |+|+|.++|+.++.|++++++||||||||++|.+|++..+.. +.++||++||++|+.|+
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHH
Confidence 346775 999999999999999999999999999999999999988743 67999999999999998
Q ss_pred -----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEE
Q 042373 212 -----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAV 268 (494)
Q Consensus 212 -----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~i 268 (494)
+||++|.+++.++. ..++++++|||||||+|.++++...++.++..++...|++
T Consensus 151 ~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il 227 (1010)
T 2xgj_A 151 AEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV 227 (1010)
T ss_dssp HHHSCEEEECSSCEECTTCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEE
T ss_pred HHhCCEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEE
Confidence 79999999887643 3688999999999999999999999999999999999999
Q ss_pred EecCCCCh
Q 042373 269 LFSPTFPP 276 (494)
Q Consensus 269 lfSAT~~~ 276 (494)
++|||+++
T Consensus 228 ~LSATi~n 235 (1010)
T 2xgj_A 228 FLSATIPN 235 (1010)
T ss_dssp EEECCCTT
T ss_pred EEcCCCCC
Confidence 99999975
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=2.5e-30 Score=287.41 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=85.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .||++|..++|.++.|+ |+.++||||||++|++|++.+... ++.++||+|||+||.|+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHH
Confidence 665 89999999999999999 999999999999999999976532 67899999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhcC---cceecccceEEEEEcccchhc-ccC-------
Q 042373 212 ------------------------------VRRGRM-IDLLCKNG---VKITNLTRVTYLVLDEADRMF-DMG------- 249 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~~---~~~~~l~~l~~lVlDEaD~ml-~~g------- 249 (494)
+||||| .|+|..+- .....++++.++||||||+|| +++
T Consensus 139 ~~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiS 218 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIIS 218 (853)
T ss_dssp HHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEE
T ss_pred HHhcCCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccccc
Confidence 799999 79887642 123567999999999999999 654
Q ss_pred --------ChhHHHHHHHhhcC
Q 042373 250 --------FEPQITRIVQNIRP 263 (494)
Q Consensus 250 --------f~~~i~~Il~~l~~ 263 (494)
|...+..|+..+++
T Consensus 219 g~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 219 GPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp EC--------------------
T ss_pred CCCccchhHHHHHHHHHHhchh
Confidence 66788899888864
No 51
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1e-29 Score=242.68 Aligned_cols=165 Identities=24% Similarity=0.388 Sum_probs=140.8
Q ss_pred eccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC
Q 042373 111 IREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190 (494)
Q Consensus 111 v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~ 190 (494)
+.|...+....+|++++|++.++++|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 4 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~---- 79 (220)
T 1t6n_A 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---- 79 (220)
T ss_dssp ----------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC----
T ss_pred CCCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc----
Confidence 3455555666789999999999999999999999999999999999999999999999999999999999887432
Q ss_pred CCCCCCeEEEEccchhHHHhh-----------------------------------------hhhhHHHHHHHhcCccee
Q 042373 191 PGDDSPVGLVMAPTGELVRQQ-----------------------------------------VRRGRMIDLLCKNGVKIT 229 (494)
Q Consensus 191 ~~~~~p~aLIl~PTreLa~Qi-----------------------------------------~TPgrl~dll~~~~~~~~ 229 (494)
..++++||++||++|+.|+ +||+++.+++... ..
T Consensus 80 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~ 154 (220)
T 1t6n_A 80 --TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SL 154 (220)
T ss_dssp --TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SS
T ss_pred --CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC---CC
Confidence 2257899999999999997 6899998888764 34
Q ss_pred cccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 230 NLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 230 ~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.++++++||+||||++++ .+|...+..++..+++.+|+++||||+++.+..+++.
T Consensus 155 ~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 155 NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp CCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred CcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 688999999999999997 5899999999999988999999999999999888876
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=2.3e-29 Score=302.46 Aligned_cols=211 Identities=14% Similarity=0.117 Sum_probs=173.1
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre 206 (494)
|+....+.|...+|..++|+|.++++.++.+ +|++++||||||||++|.+||++++.... +.++||++|||+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-------~~kavyi~P~ra 983 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-------EGRCVYITPMEA 983 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-------TCCEEEECSCHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-------CCEEEEEcChHH
Confidence 6677888888889999999999999999865 68999999999999999999999998653 568999999999
Q ss_pred HHHhh-------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC
Q 042373 207 LVRQQ-------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG 249 (494)
Q Consensus 207 La~Qi-------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g 249 (494)
||.|+ +||+++..++.+ ......+++|++||+||+|+|.+.
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~-~~~~~~l~~v~lvViDE~H~l~d~- 1061 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRR-WKQRKNVQNINLFVVDEVHLIGGE- 1061 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTT-TTTCHHHHSCSEEEECCGGGGGST-
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhC-cccccccceeeEEEeechhhcCCC-
Confidence 99997 899998655543 223345889999999999988764
Q ss_pred ChhHHHHHHH-------hhcCCCcEEEecCCCChHHHHHHHh--------------------------------------
Q 042373 250 FEPQITRIVQ-------NIRPDRQAVLFSPTFPPRVEILARK-------------------------------------- 284 (494)
Q Consensus 250 f~~~i~~Il~-------~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------- 284 (494)
....++.++. .+++..|+|++|||+++. ..++..
T Consensus 1062 rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~ 1140 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLS 1140 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHT
T ss_pred CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhh
Confidence 4555555544 345789999999999853 344432
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 1141 ~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1141 MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence
Q ss_pred ----------------cCCccceeeccccccCCCCCCceEEEe----------cCCCCCHhHHHhhhccCCC-----cce
Q 042373 285 ----------------TNVCNLSIANSVRARGLDEKELELVIN----------FDAPNDYEDYVHHCCQSWL-----KSC 333 (494)
Q Consensus 285 ----------------~g~~~ILVaTdv~~rGlDi~~v~~VIn----------yd~P~s~~~yvhR~GRaGr-----~G~ 333 (494)
.|.++|||||+++++|||+|.+.+||. +..|.+..+|+||+||||| .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 899999999999999999999999993 3347789999999999988 467
Q ss_pred EEEEecccCHHHHHH
Q 042373 334 AFRFISEENAIYATD 348 (494)
Q Consensus 334 aitfv~~~~~~~~~~ 348 (494)
|+.|+.+.+..++..
T Consensus 1301 avll~~~~~~~~~~~ 1315 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKK 1315 (1724)
T ss_dssp EEEEEEGGGHHHHHH
T ss_pred EEEEecchHHHHHHH
Confidence 999988877655543
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=280.59 Aligned_cols=131 Identities=16% Similarity=0.118 Sum_probs=100.5
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
.|+|+|.++++.++.|+|+|+++|||+|||++|++|+++++..... ...+.++|||+||++|+.|+
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 7999999999999999999999999999999999999998865321 01136899999999999876
Q ss_pred ----------------------------hhhhHHHHHHHhcC---cceecccceEEEEEcccchhcccCChhHHHH-HHH
Q 042373 212 ----------------------------VRRGRMIDLLCKNG---VKITNLTRVTYLVLDEADRMFDMGFEPQITR-IVQ 259 (494)
Q Consensus 212 ----------------------------~TPgrl~dll~~~~---~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~-Il~ 259 (494)
+||++|.+.+.... ...+.+.++++|||||||++...++...+.. ++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 68999988774321 2235688999999999999876554443333 222
Q ss_pred h----hc---------CCCcEEEecCCCCh
Q 042373 260 N----IR---------PDRQAVLFSPTFPP 276 (494)
Q Consensus 260 ~----l~---------~~~Q~ilfSAT~~~ 276 (494)
. .. +..|++++|||.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhhcccccccccccCCCCCEEEEecccccc
Confidence 2 12 66899999999875
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=1.2e-30 Score=277.55 Aligned_cols=176 Identities=15% Similarity=0.210 Sum_probs=133.4
Q ss_pred HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------h
Q 042373 152 SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------V 212 (494)
Q Consensus 152 ip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------~ 212 (494)
...+..|+++|++||||||||++|++|+++++... ++++||++|||+||.|+ .
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--------~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~ 86 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--------RLRTAVLAPTRVVAAEMAEALRGLPVRYQTSAVQREH 86 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--------TCCEEEEECSHHHHHHHHHHTTTSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--------CCcEEEECchHHHHHHHHHHhcCceEeEEecccccCC
Confidence 34466789999999999999999999999988753 67899999999999998 2
Q ss_pred hhhHHHHHHHhcC-----cceecccceEEEEEcccch-----hcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 213 RRGRMIDLLCKNG-----VKITNLTRVTYLVLDEADR-----MFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 213 TPgrl~dll~~~~-----~~~~~l~~l~~lVlDEaD~-----ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
||+++++++..+. .....++++++|||||||+ ++.++|...+. .++++|+++||||++..+..+.
T Consensus 87 t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~~~~ 161 (459)
T 2z83_A 87 QGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTDPFP 161 (459)
T ss_dssp -CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCCSSC
T ss_pred CCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchhhhc
Confidence 4444332221110 0113578999999999998 56565544322 2368999999999886554332
Q ss_pred Hh----------------------------------------------------------------------cCCcccee
Q 042373 283 RK----------------------------------------------------------------------TNVCNLSI 292 (494)
Q Consensus 283 ~~----------------------------------------------------------------------~g~~~ILV 292 (494)
.. .|..+|||
T Consensus 162 ~~~~pi~~~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLV 241 (459)
T 2z83_A 162 DSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVI 241 (459)
T ss_dssp CCSSCEEEEECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEE
T ss_pred cCCCCeEEecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEE
Confidence 21 68899999
Q ss_pred eccccccCCCCCCceEEEe--------------------cCCCCCHhHHHhhhccCCC----cceEEEEeccc
Q 042373 293 ANSVRARGLDEKELELVIN--------------------FDAPNDYEDYVHHCCQSWL----KSCAFRFISEE 341 (494)
Q Consensus 293 aTdv~~rGlDi~~v~~VIn--------------------yd~P~s~~~yvhR~GRaGr----~G~aitfv~~~ 341 (494)
||+++++|||+|+ ++||| ||+|.+..+|+||+||+|| .|.+++|+++.
T Consensus 242 aT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 242 TTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999 99999 7899999999999999776 46799999875
No 55
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=3.8e-29 Score=287.23 Aligned_cols=132 Identities=18% Similarity=0.205 Sum_probs=102.5
Q ss_pred HhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 137 SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 137 ~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
.-.|+..|+|+|.++|+.++.|+|+|++++||||||++|++|+++++...+. ..++++|||+||++|+.|+
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~----~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS----SCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999988765321 1256899999999999997
Q ss_pred ----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhH-HHH
Q 042373 212 ----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQ-ITR 256 (494)
Q Consensus 212 ----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~-i~~ 256 (494)
+||++|.+++..+. ...+.++++|||||||++...+.... +..
T Consensus 318 ~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH~~~~~~~~~~i~~~ 395 (936)
T 4a2w_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTR 395 (936)
T ss_dssp HHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECccccCCCccHHHHHHH
Confidence 79999999987642 23688999999999999987653222 223
Q ss_pred HHHhh----cCCCcEEEecCCC
Q 042373 257 IVQNI----RPDRQAVLFSPTF 274 (494)
Q Consensus 257 Il~~l----~~~~Q~ilfSAT~ 274 (494)
++... .+..|+++||||+
T Consensus 396 ~~~~~~~~~~~~~~~l~LSATp 417 (936)
T 4a2w_A 396 YLEQKFNSASQLPQILGLTASV 417 (936)
T ss_dssp HHHHHHTTCSCCCEEEEEESCC
T ss_pred HHHHhhccCCCcCeEEEecCCc
Confidence 33221 4568999999998
No 56
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=8.1e-29 Score=285.54 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=113.9
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
.++| .|+|+|.++|+.++.|+|+++++|||||||++|++|+...+.. ++++||++||++|+.|+
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHHHHT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 3567 4899999999999999999999999999999999999887643 67899999999999998
Q ss_pred ------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcE
Q 042373 212 ------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267 (494)
Q Consensus 212 ------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ 267 (494)
+||++|.+++.... ..++++.+|||||||++.+++|...+..++..+++..|+
T Consensus 105 ~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 105 TFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp TC--CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred HcCCCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 79999999887643 367899999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 042373 268 VLFSPTFP 275 (494)
Q Consensus 268 ilfSAT~~ 275 (494)
|++|||++
T Consensus 182 IlLSAT~~ 189 (997)
T 4a4z_A 182 ILLSATVP 189 (997)
T ss_dssp EEEECCCT
T ss_pred EEEcCCCC
Confidence 99999986
No 57
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.96 E-value=2.4e-30 Score=284.73 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=153.1
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------ 211 (494)
+.+.|..+++.+..++|++++|+||||||++|.+|+++. +.++||++|||+||.|+
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~g~~v 285 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAHGIDP 285 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHhCCCe
Confidence 344555555556678899999999999999999998862 56899999999999998
Q ss_pred -----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCc--EEEecC
Q 042373 212 -----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ--AVLFSP 272 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q--~ilfSA 272 (494)
+||++| +.. ..+.++++++||||||| +++++|...+..|++.++..+| ++++||
T Consensus 286 g~~vG~~~~~~~~~IlV~TPGrL---l~~---~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 286 NIRTGVRTITTGAPVTYSTYGKF---LAD---GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp EEECSSCEECCCCSEEEEEHHHH---HHT---TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred eEEECcEeccCCCCEEEECcHHH---HhC---CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 799997 333 23568899999999994 7788999999999999988777 677799
Q ss_pred CCChHHHHH---------------------------------------------HHh---------------------cC
Q 042373 273 TFPPRVEIL---------------------------------------------ARK---------------------TN 286 (494)
Q Consensus 273 T~~~~v~~l---------------------------------------------~~~---------------------~g 286 (494)
|++..+... +.. .+
T Consensus 359 T~~~~i~~~~p~i~~v~~~~~~~i~~~~~~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~ 438 (666)
T 3o8b_A 359 TPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTI 438 (666)
T ss_dssp SCTTCCCCCCTTEEEEECBSCSSEEETTEEECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSS
T ss_pred CCCcccccCCcceEEEeecccchhHHHHhhhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhC
Confidence 987543210 000 46
Q ss_pred CccceeeccccccCCCCCCceEEE----------ecC-----------CCCCHhHHHhhhccCCC--cceEEEEecccCH
Q 042373 287 VCNLSIANSVRARGLDEKELELVI----------NFD-----------APNDYEDYVHHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 287 ~~~ILVaTdv~~rGlDi~~v~~VI----------nyd-----------~P~s~~~yvhR~GRaGr--~G~aitfv~~~~~ 343 (494)
..+|||||++++||||++ |++|| ||| +|.+.++|+||+||+|| .|. |+|+++.+.
T Consensus 439 ~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 439 GDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp SCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred CCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 669999999999999997 99988 788 99999999999999876 788 999998775
Q ss_pred HH--H--HHHHHHHHh
Q 042373 344 IY--A--TDLVKAFEL 355 (494)
Q Consensus 344 ~~--~--~~i~~~l~~ 355 (494)
.. + ..+.+.++.
T Consensus 517 ~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 517 PSGMFDSSVLCECYDA 532 (666)
T ss_dssp CSSBCCHHHHHHHHHH
T ss_pred hcccccHHHHHHHhcC
Confidence 54 3 566666553
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.7e-28 Score=275.71 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=149.4
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 130 TKILETFSKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 130 ~~ll~~l~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
..+...+..++| .||++|.++|+.++.+ +|++++|+||||||++|++|++..+.. +.+++||+|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaP 425 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeC
Confidence 344445678999 9999999999999876 699999999999999999999998854 678999999
Q ss_pred chhHHHhhh---------------------hhh---HHHHHHHhcCcc-----------eecccceEEEEEcccchhccc
Q 042373 204 TGELVRQQV---------------------RRG---RMIDLLCKNGVK-----------ITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 204 TreLa~Qi~---------------------TPg---rl~dll~~~~~~-----------~~~l~~l~~lVlDEaD~ml~~ 248 (494)
|++||.|+. +.. ..+..+..+... ...+.++.+||+||+|++..
T Consensus 426 tr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~- 504 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGV- 504 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC---
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhH-
Confidence 999999981 000 111112211110 13578999999999999632
Q ss_pred CChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh--------------------------------------------
Q 042373 249 GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK-------------------------------------------- 284 (494)
Q Consensus 249 gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------------- 284 (494)
.. ...+......+|+++||||+++....+...
T Consensus 505 --~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~q 580 (780)
T 1gm5_A 505 --KQ--REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQ 580 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCC
T ss_pred --HH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCc
Confidence 11 111222335688999999976554433321
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.|+++|||||+++++|+|+|++++
T Consensus 581 vlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 581 AFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp BCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCE
T ss_pred EEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCE
Confidence 688999999999999999999999
Q ss_pred EEecCCCC-CHhHHHhhhccCCC---cceEEEEecccCHH
Q 042373 309 VINFDAPN-DYEDYVHHCCQSWL---KSCAFRFISEENAI 344 (494)
Q Consensus 309 VInyd~P~-s~~~yvhR~GRaGr---~G~aitfv~~~~~~ 344 (494)
||+||.|. +...|.||+||+|| .|.|++|+++.+..
T Consensus 661 VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 661 MVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp EEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred EEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 99999996 68888899988665 78899998854433
No 59
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.4e-27 Score=248.98 Aligned_cols=121 Identities=21% Similarity=0.163 Sum_probs=103.7
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
.|+|+|.++++.++.+ ++|+.++||+|||++++++++..+... +.++|||+||++|+.|+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY--------GGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS--------CSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC--------CCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 6999999999999999 999999999999999999999887621 66899999999999987
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCC
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 264 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~ 264 (494)
+||++|...+..+ ...+.++++||+||||++........+...+....+.
T Consensus 80 ~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcC---CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 6888888877653 3468899999999999998765556666666666778
Q ss_pred CcEEEecCCCC
Q 042373 265 RQAVLFSPTFP 275 (494)
Q Consensus 265 ~Q~ilfSAT~~ 275 (494)
.+++++|||+.
T Consensus 157 ~~~l~lTaTp~ 167 (494)
T 1wp9_A 157 PLVIGLTASPG 167 (494)
T ss_dssp CCEEEEESCSC
T ss_pred CeEEEEecCCC
Confidence 99999999986
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=9.2e-28 Score=288.58 Aligned_cols=207 Identities=20% Similarity=0.212 Sum_probs=164.8
Q ss_pred CCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC--CCCCCCeEEEEccchhHHHhh-----
Q 042373 140 NHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV--PGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~--~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
||++++++|++++|.++ +++|++++||||||||++|.+|+++.+....... ....+.++||++|+|+||.|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999988 5789999999999999999999999997643221 122367899999999999998
Q ss_pred -------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHH-
Q 042373 212 -------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ- 259 (494)
Q Consensus 212 -------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~- 259 (494)
+||+++ +.+.+.......+++|++||+||+|.+-+ .....++.++.
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~r 233 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVAR 233 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHH
Confidence 799997 55544333233578999999999997765 45555555543
Q ss_pred ------hhcCCCcEEEecCCCChHHHHHHHh-------------------------------------------------
Q 042373 260 ------NIRPDRQAVLFSPTFPPRVEILARK------------------------------------------------- 284 (494)
Q Consensus 260 ------~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------- 284 (494)
..++..|+|++|||+|+. +.+++.
T Consensus 234 l~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 312 (1724)
T 4f92_B 234 AIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIM 312 (1724)
T ss_dssp HHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHH
Confidence 346789999999999853 334432
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 313 ~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~ 392 (1724)
T 4f92_B 313 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVD 392 (1724)
T ss_dssp TCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHH
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHH
Confidence
Q ss_pred ---------cCCccceeeccccccCCCCCCceEEEe----cC------CCCCHhHHHhhhccCCC-----cceEEEEecc
Q 042373 285 ---------TNVCNLSIANSVRARGLDEKELELVIN----FD------APNDYEDYVHHCCQSWL-----KSCAFRFISE 340 (494)
Q Consensus 285 ---------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd------~P~s~~~yvhR~GRaGr-----~G~aitfv~~ 340 (494)
.|.++|||||+++++|+|+|.+.+||. || .|-+..+|+||+||||| .|.+|.++++
T Consensus 393 R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 393 RTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 799999999999999999999999995 54 35689999999999998 4678888887
Q ss_pred cCHHHHHHH
Q 042373 341 ENAIYATDL 349 (494)
Q Consensus 341 ~~~~~~~~i 349 (494)
.+..+...+
T Consensus 473 ~~~~~~~~l 481 (1724)
T 4f92_B 473 GELQYYLSL 481 (1724)
T ss_dssp TTCCHHHHH
T ss_pred hhHHHHHHH
Confidence 766554433
No 61
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=4.4e-28 Score=272.95 Aligned_cols=213 Identities=19% Similarity=0.236 Sum_probs=169.7
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
+.++..|.++++++.+.+.+...+ ..|+++|+++|+.++.+ ++++++||||||||+ ++|++....... ...+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~----~~~g 140 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP----HLEN 140 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG----GGGT
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc----cCCC
Confidence 456789999999999999999887 78999999999998865 679999999999999 677763322110 1115
Q ss_pred CeEEEEccchhHHHhh----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 196 PVGLVMAPTGELVRQQ----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
++++|++|+|+|+.|+ +|||++.+.+... ..+.++++|||||
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~lIlDE 216 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED----HDLSRYSCIILDE 216 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEEEECS
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhC----ccccCCCEEEecC
Confidence 6799999999999887 6899998877653 3588999999999
Q ss_pred cch-hcccCCh-hHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 242 ADR-MFDMGFE-PQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 242 aD~-ml~~gf~-~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
+|. +++..+. ..+..+. ...++.|+++||||++.. .++..
T Consensus 217 ah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~~--~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 217 AHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDAE--KFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp GGGCCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCCH--HHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHH-HhCCCceEEEEeccccHH--HHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHH
Confidence 995 7764332 2333333 344689999999998632 11111
Q ss_pred -------------------------------------------------------------------c------CCccce
Q 042373 285 -------------------------------------------------------------------T------NVCNLS 291 (494)
Q Consensus 285 -------------------------------------------------------------------~------g~~~IL 291 (494)
. |..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 2 467899
Q ss_pred eeccccccCCCCCCceEEEecCC------------------CCCHhHHHhhhccCCC--cceEEEEecccCH
Q 042373 292 IANSVRARGLDEKELELVINFDA------------------PNDYEDYVHHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 292 VaTdv~~rGlDi~~v~~VInyd~------------------P~s~~~yvhR~GRaGr--~G~aitfv~~~~~ 343 (494)
|||+++++|||||+|++||+|++ |.+..+|+||+||+|| .|.||.|+++.+.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHh
Confidence 99999999999999999999888 8999999999999998 7999999987654
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.94 E-value=8.7e-28 Score=253.66 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=128.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------hhhhH-
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------VRRGR- 216 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------~TPgr- 216 (494)
.|+|+++++|||||||++|++|+++++... ++++|||+||++||.|+ +||++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--------g~~~lvl~Pt~~La~Q~~~~~~~~~v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--------RLRTVILAPTRVVASEMYEALRGEPIRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHTTTSCEEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--------CCCEEEECcHHHHHHHHHHHhCCCeEEEEecCccccCCCCce
Confidence 479999999999999999999999777643 67999999999999998 22322
Q ss_pred --------HHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecCCCChHHHHHHHh---
Q 042373 217 --------MIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRVEILARK--- 284 (494)
Q Consensus 217 --------l~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~~l~~~--- 284 (494)
+...+.. ...++++.+||+||||++ ..++..+...+.... ++.+|+++||||+++.+..+...
T Consensus 73 ~~~~~~~~l~~~l~~----~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~ 147 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQ----GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSP 147 (431)
T ss_dssp EEEEEHHHHHHHHHH----TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCCSSC
T ss_pred EEEEchHHHHHHHhc----CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCCCCc
Confidence 2222222 123789999999999997 554555555555443 56899999999987654333221
Q ss_pred -------------------------------------------------------------------cCCccceeecccc
Q 042373 285 -------------------------------------------------------------------TNVCNLSIANSVR 297 (494)
Q Consensus 285 -------------------------------------------------------------------~g~~~ILVaTdv~ 297 (494)
.|+.+|||||+++
T Consensus 148 i~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~v~ 227 (431)
T 2v6i_A 148 IIDEETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDIS 227 (431)
T ss_dssp CEEEECCCCSSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGG
T ss_pred eeeccccCCHHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECchH
Confidence 7899999999999
Q ss_pred ccCCCCCCceE-----------------EEecCCCCCHhHHHhhhccCCCcc----eEEEEe
Q 042373 298 ARGLDEKELEL-----------------VINFDAPNDYEDYVHHCCQSWLKS----CAFRFI 338 (494)
Q Consensus 298 ~rGlDi~~v~~-----------------VInyd~P~s~~~yvhR~GRaGr~G----~aitfv 338 (494)
++|+|+| +.+ ||+|+.|.+..+|+||+||+||.| .+++|.
T Consensus 228 e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 228 EMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp GTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred HcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999 544 689999999999999999988754 445555
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.94 E-value=3.5e-27 Score=261.40 Aligned_cols=206 Identities=15% Similarity=0.107 Sum_probs=151.8
Q ss_pred cccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 123 WRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 123 f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|..+. ....+..+..+++ | .|.......+.|++++++||||||||+ +++..+... +.++|++
T Consensus 125 fp~~e-~~d~l~~i~dl~~--p--~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~---------~~gl~l~ 186 (677)
T 3rc3_A 125 FPVLD-CKDDLRKISDLRI--P--PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---------KSGVYCG 186 (677)
T ss_dssp CGGGG-CHHHHHHHTBCCC--G--GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS---------SSEEEEE
T ss_pred CCCcC-CHHHHHHHhhccC--h--hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------CCeEEEe
Confidence 43333 4444555544433 3 344445567899999999999999998 555555542 3469999
Q ss_pred cchhHHHhh----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 203 PTGELVRQQ----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 203 PTreLa~Qi----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
|||+||.|+ .|||++.+++.........++.+++||+||||+|++.+|...+..++..
T Consensus 187 PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~ 266 (677)
T 3rc3_A 187 PLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLG 266 (677)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEECCeeEEecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHc
Confidence 999999998 4666665555432211122467899999999999999999999999998
Q ss_pred hc-CCCcEEEecCCCChHHHHHHHh-------------------------------------------------------
Q 042373 261 IR-PDRQAVLFSPTFPPRVEILARK------------------------------------------------------- 284 (494)
Q Consensus 261 l~-~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------- 284 (494)
++ ...|++++|||. +.+..++..
T Consensus 267 l~~~~i~il~~SAT~-~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 267 LCAEEVHLCGEPAAI-DLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp CCEEEEEEEECGGGH-HHHHHHHHHHTCCEEEEECCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred cCccceEEEeccchH-HHHHHHHHhcCCceEEEEeeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 87 678999999995 334444432
Q ss_pred ----------------------c--CCccceeeccccccCCCCCCceEEEecCC--------------CCCHhHHHhhhc
Q 042373 285 ----------------------T--NVCNLSIANSVRARGLDEKELELVINFDA--------------PNDYEDYVHHCC 326 (494)
Q Consensus 285 ----------------------~--g~~~ILVaTdv~~rGlDi~~v~~VInyd~--------------P~s~~~yvhR~G 326 (494)
. |..+|||||+++++|||+ +|++||+|++ |.+..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 4 889999999999999999 9999999999 789999999999
Q ss_pred cCCCcce-----EEEEecccCHHHHHH
Q 042373 327 QSWLKSC-----AFRFISEENAIYATD 348 (494)
Q Consensus 327 RaGr~G~-----aitfv~~~~~~~~~~ 348 (494)
|+||.|. .++++.+.+...+..
T Consensus 425 RAGR~g~~g~~G~v~~l~~~d~~~~~~ 451 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTMNHEDLSLLKE 451 (677)
T ss_dssp TBTCTTSSCSSEEEEESSTTHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEecchHHHHHH
Confidence 9988661 333444444444333
No 64
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=6.7e-26 Score=264.74 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=158.3
Q ss_pred CCCCHHHHHHH-HhCCCCCCChhHHHHHHHHHc----CC--CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 126 TGLTTKILETF-SKLNHENPVAIQAPASALIIS----GL--DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 126 l~L~~~ll~~l-~~~g~~~ptpiQ~~aip~il~----gr--dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
++++....+.+ ..++|+ |||+|.++|+.++. |+ |+|++++||||||++|+++++..+.. ++++
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---------g~~v 655 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQV 655 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCeE
Confidence 45666666666 457885 79999999999987 66 99999999999999999999887642 6799
Q ss_pred EEEccchhHHHhhh---------------------hh---hHHHHHHHhcCc-----------ceecccceEEEEEcccc
Q 042373 199 LVMAPTGELVRQQV---------------------RR---GRMIDLLCKNGV-----------KITNLTRVTYLVLDEAD 243 (494)
Q Consensus 199 LIl~PTreLa~Qi~---------------------TP---grl~dll~~~~~-----------~~~~l~~l~~lVlDEaD 243 (494)
|||+||++||.|+. +. ...+..+..+.. +.+.++++.+||+||||
T Consensus 656 lvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 656 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp EEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGG
T ss_pred EEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechH
Confidence 99999999999981 00 011111211111 12457899999999999
Q ss_pred hhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------------------
Q 042373 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------------------- 284 (494)
Q Consensus 244 ~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------- 284 (494)
++ ......++..++..+++++||||+++....++..
T Consensus 736 ~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~ 810 (1151)
T 2eyq_A 736 RF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 810 (1151)
T ss_dssp GS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHT
T ss_pred hc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHh
Confidence 94 3456677788888999999999987766555443
Q ss_pred ---------------------------------------------------cCCccceeeccccccCCCCCCceEEEecC
Q 042373 285 ---------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFD 313 (494)
Q Consensus 285 ---------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd 313 (494)
.|+++|||||+++++|||+|++++||+++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~ 890 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 890 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC
Confidence 78999999999999999999999999999
Q ss_pred CC-CCHhHHHhhhccCCC---cceEEEEeccc
Q 042373 314 AP-NDYEDYVHHCCQSWL---KSCAFRFISEE 341 (494)
Q Consensus 314 ~P-~s~~~yvhR~GRaGr---~G~aitfv~~~ 341 (494)
.+ .++.+|+||+||+|| .|.||+|+.+.
T Consensus 891 ~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 891 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 84 589999999999766 67899888765
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.94 E-value=7.6e-26 Score=239.86 Aligned_cols=176 Identities=18% Similarity=0.161 Sum_probs=142.1
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
.|+|+|.++++.++.+++++++++||+|||++|++++... +.++|||+||++|+.|+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIFGEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGGCGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhCCCcc
Confidence 7999999999999999999999999999999999998764 45799999999999997
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
+||+.+...+.. ...++.+||+||||++...+|.. ++..+ +..+++++|||+.
T Consensus 161 v~~~~g~~~~~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~ 229 (472)
T 2fwr_A 161 VGEFSGRIKELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFE 229 (472)
T ss_dssp EEEBSSSCBCCCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCC
T ss_pred eEEECCCcCCcCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCcc
Confidence 566665544432 12468999999999999877654 44444 4678999999985
Q ss_pred h-------------------HHHH--------------------------------------------------------
Q 042373 276 P-------------------RVEI-------------------------------------------------------- 280 (494)
Q Consensus 276 ~-------------------~v~~-------------------------------------------------------- 280 (494)
. ....
T Consensus 230 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 309 (472)
T 2fwr_A 230 REDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMA 309 (472)
T ss_dssp CTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTT
T ss_pred CCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHH
Confidence 1 0000
Q ss_pred ---------------------------------HHHh-------------------------------------------
Q 042373 281 ---------------------------------LARK------------------------------------------- 284 (494)
Q Consensus 281 ---------------------------------l~~~------------------------------------------- 284 (494)
+...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~ 389 (472)
T 2fwr_A 310 SGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEG 389 (472)
T ss_dssp TCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHH
Confidence 0000
Q ss_pred --cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc------eEEEEeccc
Q 042373 285 --TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS------CAFRFISEE 341 (494)
Q Consensus 285 --~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G------~aitfv~~~ 341 (494)
.|.++|||||+++++|+|+|++++||+||.|.+...|+||+||+||.| .+|.|++..
T Consensus 390 F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 390 FRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999977744 456677754
No 66
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.93 E-value=3e-26 Score=245.33 Aligned_cols=180 Identities=14% Similarity=0.046 Sum_probs=145.5
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------- 211 (494)
..|+|+|.++++.++.++|++++++||||||++|++++...+... ++++|||+||++|+.|+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--------~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--------EGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--------SSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--------CCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 489999999999999999999999999999999999999887532 45899999999999998
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCC
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR 265 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~ 265 (494)
+||+.|. .. ....+.++.+||+||||++.. ..+..++..+++..
T Consensus 184 ~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~----~~--~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVV----KQ--PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp CGGGEEECGGGCCTTGGGCTTCSEEEEEHHHHT----TS--CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred CccceEEEecCCccccccccCCcEEEEeHHHHh----hc--hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 3444321 11 113478899999999999875 56778888888889
Q ss_pred cEEEecCCCChHHHH--------------------------------------------------HHH---h--------
Q 042373 266 QAVLFSPTFPPRVEI--------------------------------------------------LAR---K-------- 284 (494)
Q Consensus 266 Q~ilfSAT~~~~v~~--------------------------------------------------l~~---~-------- 284 (494)
++++||||++..... +.. .
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 999999997543100 000 0
Q ss_pred -------------------------------------------------------------cCCccceeec-cccccCCC
Q 042373 285 -------------------------------------------------------------TNVCNLSIAN-SVRARGLD 302 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVaT-dv~~rGlD 302 (494)
.|..+||||| +++++|+|
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 7889999999 99999999
Q ss_pred CCCceEEEecCCCCCHhHHHhhhccCCCc---ceEEEEec
Q 042373 303 EKELELVINFDAPNDYEDYVHHCCQSWLK---SCAFRFIS 339 (494)
Q Consensus 303 i~~v~~VInyd~P~s~~~yvhR~GRaGr~---G~aitfv~ 339 (494)
+|++++||+|+.|.+...|+||+||+||. |.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999996663 33444544
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.91 E-value=2.4e-24 Score=235.09 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=78.4
Q ss_pred CCChhHHHHHHHHHc----C-CCEEEEcCCCCCchhhhHHHHHHHHHcCC-CCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 143 NPVAIQAPASALIIS----G-LDSVAITETGSGKTLAFLLPMLRHIWEQP-PVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~----g-rdvi~~a~TGSGKTlafllpil~~l~~~~-~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
.|+|+|.++++.++. | ++++++++||||||++++. ++..+.... .......++++|||+||++|+.|+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999999886 4 6699999999999999655 444444322 111111378999999999999996
Q ss_pred -----------------------hhhhHHHHHHHhcC-cceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcE
Q 042373 212 -----------------------VRRGRMIDLLCKNG-VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267 (494)
Q Consensus 212 -----------------------~TPgrl~dll~~~~-~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ 267 (494)
+||++|...+.... ...+...++++||+||||++...+ ...+..++..++ ..++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~ 334 (590)
T 3h1t_A 257 TPFGDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PAFQ 334 (590)
T ss_dssp TTTCSSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TSEE
T ss_pred HhcchhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cceE
Confidence 68888877654221 122346678999999999998643 245566777774 4789
Q ss_pred EEecCCCC
Q 042373 268 VLFSPTFP 275 (494)
Q Consensus 268 ilfSAT~~ 275 (494)
++||||..
T Consensus 335 l~lTATP~ 342 (590)
T 3h1t_A 335 IGMTATPL 342 (590)
T ss_dssp EEEESSCS
T ss_pred EEeccccc
Confidence 99999954
No 68
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=182.48 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=115.4
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 131 KILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 131 ~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.+.+.+.......++++|.++++.+..|++++++|+||||||.+|.++++..+..... ..+..+|+++|||+|+.|
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVS 124 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHH
Confidence 3333333333446799999999999999999999999999999999999988765431 125689999999999998
Q ss_pred h-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh-cccCCh-hH
Q 042373 211 Q-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM-FDMGFE-PQ 253 (494)
Q Consensus 211 i-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m-l~~gf~-~~ 253 (494)
+ +|||+|.+++.. .++++++|||||||++ ++++|. ..
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccCCcchHHHHHH
Confidence 7 799999999875 4889999999999997 888887 45
Q ss_pred HHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCc
Q 042373 254 ITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVC 288 (494)
Q Consensus 254 i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~ 288 (494)
+..++... +++|+++||||++... +++.-+..
T Consensus 199 l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~ 230 (235)
T 3llm_A 199 LRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNC 230 (235)
T ss_dssp HHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSC
T ss_pred HHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCC
Confidence 56666554 6899999999999876 55443333
No 69
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.80 E-value=4.6e-19 Score=204.15 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=83.2
Q ss_pred CCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-------
Q 042373 142 ENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------- 212 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------- 212 (494)
..|+|+|..++..++.. ..+|++.+||+|||+.++..+...+.... ..++|||||+ .|+.|+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-------~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-------AERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-------CCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-------CCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 47999999999988864 58999999999999999887776664321 3479999999 9998871
Q ss_pred -------hhhHHH--------------------HHHHhcC--cceecccceEEEEEcccchhcccCChh-HHHHHHHhh-
Q 042373 213 -------RRGRMI--------------------DLLCKNG--VKITNLTRVTYLVLDEADRMFDMGFEP-QITRIVQNI- 261 (494)
Q Consensus 213 -------TPgrl~--------------------dll~~~~--~~~~~l~~l~~lVlDEaD~ml~~gf~~-~i~~Il~~l- 261 (494)
...+.. +.+.... ...+...++.+||+||||++...+... ....++..+
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 111111 1111110 011224478999999999997654321 223333333
Q ss_pred cCCCcEEEecCCC
Q 042373 262 RPDRQAVLFSPTF 274 (494)
Q Consensus 262 ~~~~Q~ilfSAT~ 274 (494)
...++++++|||.
T Consensus 304 ~~~~~~L~LTATP 316 (968)
T 3dmq_A 304 EHVPGVLLLTATP 316 (968)
T ss_dssp TTCSSEEESCSSC
T ss_pred hcCCcEEEEEcCC
Confidence 3456789999995
No 70
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.80 E-value=5.6e-20 Score=173.23 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=96.8
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh-h------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ-Q------ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q-i------ 211 (494)
.....|+++|.++++.++.++++++++|||+|||++|+++++..+...... ..++++||++||++|+.| +
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999887543211 125689999999999998 3
Q ss_pred --------------------------------hhhhHHHHHHHhcCc---ceecccceEEEEEcccchhcccCChhHHHH
Q 042373 212 --------------------------------VRRGRMIDLLCKNGV---KITNLTRVTYLVLDEADRMFDMGFEPQITR 256 (494)
Q Consensus 212 --------------------------------~TPgrl~dll~~~~~---~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~ 256 (494)
+||++|..++..... ....+.++++||+||||++...++...+..
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred HhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 678888888775421 114578999999999999998777666543
Q ss_pred HH-Hhh-c------------CCCcEEEecCC
Q 042373 257 IV-QNI-R------------PDRQAVLFSPT 273 (494)
Q Consensus 257 Il-~~l-~------------~~~Q~ilfSAT 273 (494)
.+ ... + +..+++++|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 22 211 1 67899999998
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.80 E-value=5.6e-19 Score=203.55 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=86.2
Q ss_pred CCChhHHHHHHHHHc--------------CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 143 NPVAIQAPASALIIS--------------GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 143 ~ptpiQ~~aip~il~--------------grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
.|+|+|..|++.++. +++.+++++||||||+++ ++++..+... ...+++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~------~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL------DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC------TTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc------CCCceEEEEeCcHHHH
Confidence 599999999999886 479999999999999997 6777555321 1146899999999999
Q ss_pred Hhh----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHH
Q 042373 209 RQQ----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQI 254 (494)
Q Consensus 209 ~Qi----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i 254 (494)
.|+ +||++|.+++..... ...++...+||+||||++...+ ..
T Consensus 344 ~Q~~~~f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~-~~~~~~~~lvIiDEAHrs~~~~---~~ 419 (1038)
T 2w00_A 344 YQTMKEYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESD-LPVYNQQVVFIFDECHRSQFGE---AQ 419 (1038)
T ss_dssp HHHHHHHHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCC-CGGGGSCEEEEEESCCTTHHHH---HH
T ss_pred HHHHHHHHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccc-hhccccccEEEEEccchhcchH---HH
Confidence 997 677888777664321 1245678999999999976322 23
Q ss_pred HHHHHhhcCCCcEEEecCCC
Q 042373 255 TRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 255 ~~Il~~l~~~~Q~ilfSAT~ 274 (494)
..|+..++ ..++++||||+
T Consensus 420 ~~I~~~~p-~a~~lgfTATP 438 (1038)
T 2w00_A 420 KNLKKKFK-RYYQFGFTGTP 438 (1038)
T ss_dssp HHHHHHCS-SEEEEEEESSC
T ss_pred HHHHHhCC-cccEEEEeCCc
Confidence 33444442 35556666654
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.78 E-value=2.1e-18 Score=183.85 Aligned_cols=116 Identities=16% Similarity=0.236 Sum_probs=77.5
Q ss_pred CCCChhHHHHHHHH----HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 142 ENPVAIQAPASALI----ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~i----l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
..|+|+|.+++..+ ..|+++|+..+||+|||+.++. ++..+.... ....+|||||+ .|+.|+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~------~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKEN------ELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTT------CCSSEEEEECS-TTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcC------CCCCEEEEccH-HHHHHHHHHHHH
Confidence 36999999999876 3678999999999999999755 444444321 14579999995 587776
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCC
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR 265 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~ 265 (494)
+|++++..... +....+++||+||||++...+ ......+..++ ..
T Consensus 108 ~~~~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 108 FAPHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SK 178 (500)
T ss_dssp HCTTSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EE
T ss_pred HCCCceEEEEecCchhccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cC
Confidence 23333221111 123467999999999987543 23444444452 34
Q ss_pred cEEEecCCC
Q 042373 266 QAVLFSPTF 274 (494)
Q Consensus 266 Q~ilfSAT~ 274 (494)
+.+++|||.
T Consensus 179 ~~l~LTaTP 187 (500)
T 1z63_A 179 YRIALTGTP 187 (500)
T ss_dssp EEEEECSSC
T ss_pred cEEEEecCC
Confidence 567777775
No 73
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.76 E-value=1.3e-18 Score=193.07 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=59.3
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCC-----CCCHhHHHhhhccCCC--cceEEEEecccCHHHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDA-----PNDYEDYVHHCCQSWL--KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~-----P~s~~~yvhR~GRaGr--~G~aitfv~~~~~~~~~~i~~ 351 (494)
.|.++|||||+++++|+|+|+|++||+||. |.+..+|+||+||+|| .|.+++|+++.+......|.+
T Consensus 487 ~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 487 LGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp TTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHHHH
T ss_pred cCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCHHHHHHHHH
Confidence 478999999999999999999999999997 9999999999999887 689999999887665555544
No 74
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.74 E-value=8.1e-18 Score=186.50 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=59.5
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCC-----CCCHhHHHhhhccCCC--cceEEEEecccCHHHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDA-----PNDYEDYVHHCCQSWL--KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~-----P~s~~~yvhR~GRaGr--~G~aitfv~~~~~~~~~~i~~ 351 (494)
.|.++|||||+++++|+|+|+|++||+||. |.+..+|+||+||+|| .|.+++|+++.+......|.+
T Consensus 493 ~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 493 LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp HTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHHHHHHHHH
T ss_pred cCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999999999997 9999999999999887 799999999887665555443
No 75
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.73 E-value=2.7e-17 Score=180.36 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=54.2
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|+++|....-.+..|+ |+...||+|||+++.+|++-..+. |..+.|++||+.||.|-
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rd 132 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRD 132 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhH
Confidence 666 69999999999999998 899999999999999999866543 66799999999999986
No 76
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.72 E-value=5.9e-18 Score=167.79 Aligned_cols=119 Identities=14% Similarity=0.052 Sum_probs=97.3
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------- 211 (494)
-+|+|+|.++++.++.+++.+++++||+|||+++++++...+... +.++|||+||++|+.|+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--------~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--------EGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--------SSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--------CCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 389999999999999999999999999999999999888776532 34899999999999997
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCC
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR 265 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~ 265 (494)
+||+++... ....+.++++||+||||++.. +.+..++..++..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~------~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTS------CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchhhhccCCcEEEEchHHHHhh------HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCC
Confidence 344433211 112467899999999999984 47888888888899
Q ss_pred cEEEecCCCChHH
Q 042373 266 QAVLFSPTFPPRV 278 (494)
Q Consensus 266 Q~ilfSAT~~~~v 278 (494)
++++||||++...
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999998654
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.64 E-value=9.2e-16 Score=143.45 Aligned_cols=105 Identities=28% Similarity=0.305 Sum_probs=78.8
Q ss_pred CcEEEecCCCChHHHHHHH---hcCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEe
Q 042373 265 RQAVLFSPTFPPRVEILAR---KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFI 338 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~~l~~---~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv 338 (494)
..+..+.+.++..-...+. +.|.++|||||+++++|+|+|++++||+||+|.+..+|+||+||+|| .|.+++|+
T Consensus 71 ~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 150 (185)
T 2jgn_A 71 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 150 (185)
T ss_dssp CCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEE
T ss_pred CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEE
Confidence 4455555555443221111 27899999999999999999999999999999999999999999655 68999999
Q ss_pred cccCHHHHHHHHHHHHhccCcchHHHHHHHH
Q 042373 339 SEENAIYATDLVKAFELSELVVRDDLKAVAD 369 (494)
Q Consensus 339 ~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~ 369 (494)
++.+...+..+.+.++...+++|++|..++.
T Consensus 151 ~~~~~~~~~~l~~~l~~~~~~~~~~l~~~a~ 181 (185)
T 2jgn_A 151 NERNINITKDLLDLLVEAKQEVPSWLENMAY 181 (185)
T ss_dssp CGGGGGGHHHHHHHHHHTTCCCCHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 9999999999999999999999999988874
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=142.63 Aligned_cols=84 Identities=25% Similarity=0.356 Sum_probs=77.6
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEeccc-CHHHHHHHHHHHHhccCcc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEE-NAIYATDLVKAFELSELVV 360 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~-~~~~~~~i~~~l~~~~~~v 360 (494)
.|.++|||||++++||+|++++++|||||+|.+...|+||+||+|| .|.+++|+++. +..++..|.+.++..++.+
T Consensus 102 ~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~ 181 (191)
T 2p6n_A 102 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKV 181 (191)
T ss_dssp HTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCC
T ss_pred cCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcC
Confidence 6889999999999999999999999999999999999999999665 67899999986 7889999999999999999
Q ss_pred hHHHHHHH
Q 042373 361 RDDLKAVA 368 (494)
Q Consensus 361 p~~l~~~~ 368 (494)
|++|.+++
T Consensus 182 p~~l~~~~ 189 (191)
T 2p6n_A 182 PPVLQVLH 189 (191)
T ss_dssp CHHHHSTT
T ss_pred CHHHHhhc
Confidence 99987654
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=4.3e-15 Score=168.02 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=48.3
Q ss_pred ccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc
Q 042373 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE 341 (494)
Q Consensus 288 ~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~ 341 (494)
..+|++|.+++.|||++.+++||+||.|.++..++||+||+.|.| .+|.|++..
T Consensus 626 ~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 626 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred eEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 358999999999999999999999999999999999999977644 477788876
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.59 E-value=6e-14 Score=155.02 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=48.0
Q ss_pred cceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc
Q 042373 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE 341 (494)
Q Consensus 289 ~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~ 341 (494)
.+||+|+++++|||++++++||+||+|.++..|.||+||++|.| .+|.|++..
T Consensus 471 v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 471 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp EEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred EEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 48999999999999999999999999999999999999977755 577788876
No 81
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.58 E-value=5.3e-15 Score=143.60 Aligned_cols=113 Identities=20% Similarity=0.124 Sum_probs=86.1
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------- 211 (494)
..|+++|.+++..++.+++++++++||+|||++++.++... +..+||++||++|+.|+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~~~~ 159 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIFGEE 159 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGGCGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhCCCC
Confidence 48999999999999999999999999999999998877642 45799999999999886
Q ss_pred -----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 212 -----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
+|++.+...+.. ...++.+||+||||++....|. .++..+ +..+++++|||.
T Consensus 160 ~v~~~~g~~~~~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~~~~~~----~i~~~~-~~~~~l~LSATp 228 (237)
T 2fz4_A 160 YVGEFSGRIKELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYV----QIAQMS-IAPFRLGLTATF 228 (237)
T ss_dssp GEEEESSSCBCCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCTTTHH----HHHHTC-CCSEEEEEEESC
T ss_pred eEEEEeCCCCCcCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCCChHHH----HHHHhc-cCCEEEEEecCC
Confidence 233333222211 1246899999999999876543 455555 367899999998
Q ss_pred ChH
Q 042373 275 PPR 277 (494)
Q Consensus 275 ~~~ 277 (494)
+..
T Consensus 229 ~r~ 231 (237)
T 2fz4_A 229 ERE 231 (237)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 82
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.58 E-value=1.9e-15 Score=168.51 Aligned_cols=97 Identities=25% Similarity=0.301 Sum_probs=84.4
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
-+|| .||++|..++|.+++|+ |+.++||||||++|++|++...+. |..++||+||++||.|+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 3899 99999999999999999 999999999999999999765542 55799999999999997
Q ss_pred -------------------------------hhhhHH-HHHHHhcC---cceeccc---ceEEEEEcccchhc
Q 042373 212 -------------------------------VRRGRM-IDLLCKNG---VKITNLT---RVTYLVLDEADRMF 246 (494)
Q Consensus 212 -------------------------------~TPgrl-~dll~~~~---~~~~~l~---~l~~lVlDEaD~ml 246 (494)
+||++| .|+|..+- .....++ .+.++||||+|+||
T Consensus 143 l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 799999 89998652 1124577 89999999999998
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=4.5e-14 Score=130.18 Aligned_cols=95 Identities=26% Similarity=0.368 Sum_probs=75.7
Q ss_pred EEEecCCCChHHHHHHH---hcCCccceeeccccccCCCCCCceEEEecCCC------CCHhHHHhhhccCCC---cceE
Q 042373 267 AVLFSPTFPPRVEILAR---KTNVCNLSIANSVRARGLDEKELELVINFDAP------NDYEDYVHHCCQSWL---KSCA 334 (494)
Q Consensus 267 ~ilfSAT~~~~v~~l~~---~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P------~s~~~yvhR~GRaGr---~G~a 334 (494)
+..+++.++......+. +.|.++|||||+++++|+|+|++++|||||+| .+..+|+||+||+|| .|.+
T Consensus 61 ~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~ 140 (175)
T 2rb4_A 61 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA 140 (175)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceE
Confidence 34444445544332221 27899999999999999999999999999999 999999999999655 6899
Q ss_pred EEEecccCHHHHHHHHHHHHhccCcch
Q 042373 335 FRFISEENAIYATDLVKAFELSELVVR 361 (494)
Q Consensus 335 itfv~~~~~~~~~~i~~~l~~~~~~vp 361 (494)
++|+++.+...+..+.+.++.....+|
T Consensus 141 ~~~~~~~~~~~~~~i~~~~~~~~~~~~ 167 (175)
T 2rb4_A 141 FNMIEVDELPSLMKIQDHFNSSIKQLN 167 (175)
T ss_dssp EEEECGGGHHHHHHHHHHHTCCCEEEC
T ss_pred EEEEccchHHHHHHHHHHhcCcccccC
Confidence 999999999999999998887665554
No 84
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.56 E-value=4.7e-14 Score=128.65 Aligned_cols=75 Identities=27% Similarity=0.399 Sum_probs=67.9
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELV 359 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~ 359 (494)
.|.++|||||+++++|+|+|++++|||||+|.+...|+||+||+|| .|.+++|+++.+..++..+.+.+....+.
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 7889999999999999999999999999999999999999999655 67899999999999999999888655443
No 85
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.55 E-value=1.4e-14 Score=132.30 Aligned_cols=80 Identities=26% Similarity=0.454 Sum_probs=72.3
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcch
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVR 361 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp 361 (494)
.|..+|||||+++++|+|+|++++||+||+|.+..+|+||+||+|| .|.+++|+++.+...+..+.++++...+++|
T Consensus 78 ~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 78 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 157 (165)
T ss_dssp TTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECC
T ss_pred cCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccC
Confidence 7889999999999999999999999999999999999999999665 6889999999999999999999988888777
Q ss_pred HHH
Q 042373 362 DDL 364 (494)
Q Consensus 362 ~~l 364 (494)
..+
T Consensus 158 ~~~ 160 (165)
T 1fuk_A 158 SDI 160 (165)
T ss_dssp SCC
T ss_pred ccH
Confidence 554
No 86
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.54 E-value=1e-13 Score=132.17 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=68.0
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELV 359 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~ 359 (494)
.|..+|||||++++||+|+++|++|||||+|.+...|+||+||+|| .|.|++|+++.+...+..+.+.++.....
T Consensus 79 ~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 156 (212)
T 3eaq_A 79 QGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR 156 (212)
T ss_dssp SSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEE
T ss_pred CCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCee
Confidence 7899999999999999999999999999999999999999999665 68999999999999999999988765443
No 87
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.48 E-value=1.1e-13 Score=127.55 Aligned_cols=102 Identities=22% Similarity=0.403 Sum_probs=82.4
Q ss_pred CCcEEEecCCCChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCC---CcceEEEE
Q 042373 264 DRQAVLFSPTFPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRF 337 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitf 337 (494)
...+..+.+.++......+.. .|..+|||||+++++|+|++++++|||||+|.+...|+||+||+| +.|.+++|
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 455677777777655433322 799999999999999999999999999999999999999999955 46789999
Q ss_pred eccc-CHHHHHHHHHHHHhccCcchHHHH
Q 042373 338 ISEE-NAIYATDLVKAFELSELVVRDDLK 365 (494)
Q Consensus 338 v~~~-~~~~~~~i~~~l~~~~~~vp~~l~ 365 (494)
+++. +...+..+.+.+.....++|.++.
T Consensus 135 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 135 VSDENDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp ECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred EcChhHHHHHHHHHHHHhcchhhCChhhc
Confidence 9976 568889999999888888887653
No 88
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.45 E-value=5e-13 Score=134.47 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=85.1
Q ss_pred hHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc
Q 042373 252 PQITRIVQNIR-PDRQAVLFSPTFPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ 327 (494)
Q Consensus 252 ~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR 327 (494)
..+..+...+. ....+..+.+.++..-...+.. .|..+|||||++++||||+++|++|||||+|.+...|+||+||
T Consensus 39 ~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GR 118 (300)
T 3i32_A 39 AETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGR 118 (300)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccC
Confidence 34444444442 3456777788887665443332 8999999999999999999999999999999999999999999
Q ss_pred CCC---cceEEEEecccCHHHHHHHHHHHHhccC
Q 042373 328 SWL---KSCAFRFISEENAIYATDLVKAFELSEL 358 (494)
Q Consensus 328 aGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~ 358 (494)
+|| .|.|++|+++.+...+..+.+.++....
T Consensus 119 agR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~ 152 (300)
T 3i32_A 119 TGRAGRGGRVVLLYGPRERRDVEALERAVGRRFK 152 (300)
T ss_dssp CC-----CEEEEEECSSTHHHHHHHHHHHTCCCE
T ss_pred cCcCCCCceEEEEeChHHHHHHHHHHHHhCCcce
Confidence 665 6899999999999999999999876543
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.88 E-value=7.6e-13 Score=121.42 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=65.3
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
.|.++|||||+++++|+|++++++|||||+|.+...|+||+||+|| .|.+++|+++.+...+..+.+.++...
T Consensus 78 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 78 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 6788999999999999999999999999999999999999999655 678999999998888888888766443
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.16 E-value=5.6e-11 Score=128.89 Aligned_cols=59 Identities=24% Similarity=0.095 Sum_probs=52.5
Q ss_pred CCCCCChhHHHHHHH----HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 140 NHENPVAIQAPASAL----IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~----il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
|| .|.|.|.+.+.. +..|+|+++.||||+|||++|++|++.. ++++||++||++|+.|+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~ 63 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPI 63 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHH
Confidence 45 689999997764 5689999999999999999999999972 67999999999999998
No 91
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.11 E-value=8.2e-11 Score=127.31 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=49.6
Q ss_pred CCCCCCChhHHHHHH----HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASA----LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip----~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|| .|+|+|.+++. .+..|+++++.||||+|||++|++|++.. ++++||++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHH
Confidence 578 89999999865 45689999999999999999999999764 57899999999999998
No 92
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.90 E-value=2.2e-09 Score=117.81 Aligned_cols=114 Identities=25% Similarity=0.347 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCch--hhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKT--LAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---------- 212 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKT--lafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---------- 212 (494)
+++|+.+++.++.+++++++|++||||| ++++++.+..+... .+.++++++||+++|.++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-------~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-------ERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-------CCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-------CCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999 77888888765211 1568999999999998862
Q ss_pred ---------------hhhHHHHH------HHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 213 ---------------RRGRMIDL------LCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 213 ---------------TPgrl~dl------l~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
|.-+++.. +.... .+...+++||||||+ |++ .+.+..++..++...|++++.
T Consensus 224 ~l~~~~~~~~~~~~~Tih~ll~~~~~~~~~~~~~---~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvG 296 (608)
T 1w36_D 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA---GNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVIFLG 296 (608)
T ss_dssp SCCSCCCCSCSCCCBTTTSCC-----------CT---TSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEEEEE
T ss_pred CCCHHHHhccchhhhhhHhhhccCCCchHHHhcc---CCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEEEEc
Confidence 11111100 00000 112268899999999 665 567889999999999999985
Q ss_pred C
Q 042373 272 P 272 (494)
Q Consensus 272 A 272 (494)
=
T Consensus 297 D 297 (608)
T 1w36_D 297 D 297 (608)
T ss_dssp C
T ss_pred c
Confidence 4
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.64 E-value=2.2e-08 Score=110.14 Aligned_cols=62 Identities=23% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCChhHHHHHH----HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh
Q 042373 143 NPVAIQAPASA----LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV 212 (494)
Q Consensus 143 ~ptpiQ~~aip----~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~ 212 (494)
+|.|.|.+.+. .+..|+++++.||||+|||++|++|++.++... +++++|++||++|+.|+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--------~~kvli~t~T~~l~~Qi~ 68 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--------KLKVLYLVRTNSQEEQVI 68 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--------TCEEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--------CCeEEEECCCHHHHHHHH
Confidence 58899988875 567899999999999999999999999998642 578999999999999983
No 94
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.63 E-value=5.2e-08 Score=96.31 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=49.3
Q ss_pred CcEEEecCCCChHHH-HHHHh--cC-Ccc-ceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eE
Q 042373 265 RQAVLFSPTFPPRVE-ILARK--TN-VCN-LSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CA 334 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~-~l~~~--~g-~~~-ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~a 334 (494)
..+..+.+.++..-. .+... .+ .++ +|++|+++++|||++.+++||+||+|.++..|+||+||++|.| ..
T Consensus 138 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 138 TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEE
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEE
Confidence 345556666664332 22222 34 566 7999999999999999999999999999999999999976644 35
Q ss_pred EEEeccc
Q 042373 335 FRFISEE 341 (494)
Q Consensus 335 itfv~~~ 341 (494)
|.|++..
T Consensus 218 ~~li~~~ 224 (271)
T 1z5z_A 218 HKLISVG 224 (271)
T ss_dssp EEEEETT
T ss_pred EEEeeCC
Confidence 7788776
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.01 E-value=1.6e-05 Score=86.57 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=80.7
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-----hhhHH
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-----RRGRM 217 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-----TPgrl 217 (494)
.+++.|..++..++.++.+++.|+.|||||.. +..++..+... +..+++++||...+..+. ....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~--------g~~Vl~~ApT~~Aa~~L~e~~~~~a~Ti 259 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL--------GLEVGLCAPTGKAARRLGEVTGRTASTV 259 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHHTSCEEEH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc--------CCeEEEecCcHHHHHHhHhhhcccHHHH
Confidence 58999999999999999999999999999964 23344444332 567999999998887762 11223
Q ss_pred HHHHHhcC----cceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 218 IDLLCKNG----VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 218 ~dll~~~~----~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..++.... ....+....++||+|||+.+- ...+..++..++...+++++.
T Consensus 260 h~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 260 HRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp HHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred HHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 34443211 001123467899999999654 356777888888777777764
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.88 E-value=4.4e-05 Score=80.55 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=79.4
Q ss_pred HHhCCCCCCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 136 FSKLNHENPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 136 l~~~g~~~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
..-+.|..+++-|.+++-.++.. ..+++.|+.|||||.. +..++..+.... ...+++++||...+..
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~-------~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG-------ETGIILAAPTHAAKKI 89 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT-------CCCEEEEESSHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC-------CceEEEecCcHHHHHH
Confidence 34577999999999999987643 3899999999999954 345555555431 2368999999888765
Q ss_pred hh-----hhhHHHHHHHhcC-----------cceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 211 QV-----RRGRMIDLLCKNG-----------VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 211 i~-----TPgrl~dll~~~~-----------~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
+. ....+..++.... .....+.+.++||+||++.+- ..++..++..++...+++++.
T Consensus 90 l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 90 LSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD----RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC----HHHHHHHHHhccCCCEEEEEC
Confidence 51 1122333443110 001235578999999999543 345666666666556666554
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.08 E-value=0.00063 Score=61.76 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHH---------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhh
Q 042373 145 VAIQAPASALII---------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRG 215 (494)
Q Consensus 145 tpiQ~~aip~il---------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPg 215 (494)
++-|..++..+. .|+.+++++|+|+|||.... .+...+.... |..++ .++..++...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~~~~~-------g~~~~-~~~~~~~~~~~~--- 83 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAIYEKK-------GIRGY-FFDTKDLIFRLK--- 83 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHHHHHS-------CCCCC-EEEHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHHHHHc-------CCeEE-EEEHHHHHHHHH---
Confidence 345555554443 47899999999999996433 2333332111 22233 344555544331
Q ss_pred HHHHHHHhcCcc--eecccceEEEEEcccchh-cccCChhHHHHHHHhhc-CCCcEEEecCCCCh
Q 042373 216 RMIDLLCKNGVK--ITNLTRVTYLVLDEADRM-FDMGFEPQITRIVQNIR-PDRQAVLFSPTFPP 276 (494)
Q Consensus 216 rl~dll~~~~~~--~~~l~~l~~lVlDEaD~m-l~~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~ 276 (494)
..+...... ...+.+..+||+||++.. ++......+..++.... .+..+|+.|...+.
T Consensus 84 ---~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 84 ---HLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp ---HHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred ---HHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 111111100 012446689999999853 22222345555555543 34455554444443
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.60 E-value=0.0028 Score=56.39 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=44.1
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.|+.+++++++|+|||... -++....... |..++++ +..++... . -+.+.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~--~~i~~~~~~~-------g~~~~~~-~~~~~~~~--------~----------~~~~~~l 86 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL--QAWVAQALEA-------GKNAAYI-DAASMPLT--------D----------AAFEAEY 86 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH--HHHHHHHHTT-------TCCEEEE-ETTTSCCC--------G----------GGGGCSE
T ss_pred CCCEEEEECCCCCCHHHHH--HHHHHHHHhc-------CCcEEEE-cHHHhhHH--------H----------HHhCCCE
Confidence 6889999999999999633 2333332211 3334444 33333221 0 1345689
Q ss_pred EEEcccchhcccCChhHHHHHHHhh
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
|||||++.+.... ...+..++..+
T Consensus 87 LilDE~~~~~~~~-~~~l~~li~~~ 110 (149)
T 2kjq_A 87 LAVDQVEKLGNEE-QALLFSIFNRF 110 (149)
T ss_dssp EEEESTTCCCSHH-HHHHHHHHHHH
T ss_pred EEEeCccccChHH-HHHHHHHHHHH
Confidence 9999999865433 44555555544
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.46 E-value=0.0067 Score=66.56 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+.+-|.+|+-.+++.+++ |++||.|||||..-+- ++.++..+ +.++|+++||..-+.++
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~--------~~~ILv~a~TN~AvD~i 249 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ--------GLKVLCCAPSNIAVDNL 249 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT--------TCCEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC--------CCeEEEEcCchHHHHHH
Confidence 36799999999999988764 7789999999976443 44444443 56899999998888776
No 100
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.39 E-value=0.0037 Score=60.63 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHH-HHHHH--HHcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQA-PASAL--IISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~-~aip~--il~grdvi~~a~TGSGKTla 174 (494)
|-.+|+++.-.+..++.|... +. .+++. ..+.. +..++.++++||+|+|||..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREV-VE--LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-TH--HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHH-HH--HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 446788888777777777653 11 01110 11111 12457899999999999963
No 101
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.36 E-value=0.0091 Score=53.11 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
.+.+++++++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46899999999999964
No 102
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.30 E-value=0.011 Score=54.32 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh---hhhHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---RRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
+.+++++++|+|||... -.+...+... +..++++ ...++..++. ..+.+..++. .+....
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 117 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELAKR--------NVSSLIV-YVPELFRELKHSLQDQTMNEKLD-------YIKKVP 117 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHHTT--------TCCEEEE-EHHHHHHHHHHC---CCCHHHHH-------HHHHSS
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--------CCeEEEE-EhHHHHHHHHHHhccchHHHHHH-------HhcCCC
Confidence 78999999999999743 2344444322 2223332 2334444331 0111111111 123446
Q ss_pred EEEEcccchhc--ccCChhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 236 YLVLDEADRMF--DMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 236 ~lVlDEaD~ml--~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
+|||||++.+. ++.....+..++... ....++|+.|..-+..+
T Consensus 118 ~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l 163 (202)
T 2w58_A 118 VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQL 163 (202)
T ss_dssp EEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHH
T ss_pred EEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHH
Confidence 89999997643 222122333344433 34555666555444443
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.15 E-value=0.01 Score=54.61 Aligned_cols=97 Identities=14% Similarity=0.019 Sum_probs=49.9
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hhHHHhhhhhh----------HHHHHHHh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GELVRQQVRRG----------RMIDLLCK 223 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---reLa~Qi~TPg----------rl~dll~~ 223 (494)
.|+=.+++++.|+|||...+- ++...... +..++++.|. |....++.+.. .+.+++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~~~--------g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~ 72 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYKLG--------KKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY 72 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHHHT--------TCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGG
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHHHC--------CCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH
Confidence 456678899999999976543 33333222 4467887776 33222222110 00011110
Q ss_pred cCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+ ....++|++||++.+. ..+.+.+..+.. .+..++++.-
T Consensus 73 -----~-~~~~dvviIDE~Q~~~-~~~~~~l~~l~~---~~~~Vi~~Gl 111 (184)
T 2orw_A 73 -----I-EEDTRGVFIDEVQFFN-PSLFEVVKDLLD---RGIDVFCAGL 111 (184)
T ss_dssp -----C-CTTEEEEEECCGGGSC-TTHHHHHHHHHH---TTCEEEEEEE
T ss_pred -----h-cCCCCEEEEECcccCC-HHHHHHHHHHHH---CCCCEEEEee
Confidence 0 1257899999999863 223344433333 3555555443
No 104
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.15 E-value=0.01 Score=52.76 Aligned_cols=83 Identities=24% Similarity=0.238 Sum_probs=40.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh----hHHHHHHHhcCcceecccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR----GRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP----grl~dll~~~~~~~~~l~~ 233 (494)
++.++++|++|+|||... --+...+...... ....+...++ .....+....... ..+..++.. ......
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 115 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRIINGEVP-EGLKGRRVLA-LDMGALVAGAKYRGEFEERLKGVLND----LAKQEG 115 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHHHHTCSC-GGGTTCEEEE-ECHHHHHTTTCSHHHHHHHHHHHHHH----HHHSTT
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHHHhCCCc-hhhcCCcEEE-eeHHHHhccCCccccHHHHHHHHHHH----HhhcCC
Confidence 468999999999999643 2344444331110 0001233333 3333333211111 122222221 001223
Q ss_pred eEEEEEcccchhcc
Q 042373 234 VTYLVLDEADRMFD 247 (494)
Q Consensus 234 l~~lVlDEaD~ml~ 247 (494)
-.+|||||+|.|..
T Consensus 116 ~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 116 NVILFIDELHTMVG 129 (195)
T ss_dssp TEEEEEETGGGGTT
T ss_pred CeEEEEeCHHHHhc
Confidence 46899999999973
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.11 E-value=0.04 Score=56.82 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~ 212 (494)
.++|+|...+-.+...|-+++..+-+.|||.+...-++..+...+ +..+++++||++-|..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-------g~~v~~vA~t~~qA~~vf 225 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-------DKAVGILAHKGSMSAEVL 225 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-------SCEEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-------CCeEEEEeCCHHHHHHHH
Confidence 689999999887765677899999999999887766665554422 668999999999987764
No 106
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.01 E-value=0.012 Score=64.42 Aligned_cols=63 Identities=24% Similarity=0.170 Sum_probs=50.4
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+..+++-|..|+-.++.+.-++++||+|||||... .-++.++.... +.++|+++||...+.++
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~~-------~~~ilv~a~tn~A~~~l 240 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG-------NGPVLVCAPSNIAVDQL 240 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTSS-------SCCEEEEESSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHcC-------CCeEEEEeCcHHHHHHH
Confidence 45789999999999998888899999999999764 34555554321 56899999999888776
No 107
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.00 E-value=0.014 Score=57.18 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=40.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
+.+++++||+|+|||...- .+...+...... ..++ ++.+....|.... .+...+..++... .-.
T Consensus 67 ~~~vll~G~~GtGKT~la~-~la~~l~~~~~~---~~~~--~~~~~~~~l~~~~~g~~~~~~~~~~~~~--------~~~ 132 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL-KMAGLLHRLGYV---RKGH--LVSVTRDDLVGQYIGHTAPKTKEVLKRA--------MGG 132 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH-HHHHHHHHTTSS---SSCC--EEEECGGGTCCSSTTCHHHHHHHHHHHH--------TTS
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHhcCCc---CCCc--EEEEcHHHhhhhcccccHHHHHHHHHhc--------CCC
Confidence 3579999999999996443 233333322110 0122 3333334443322 2333444444432 124
Q ss_pred EEEEcccchhcc
Q 042373 236 YLVLDEADRMFD 247 (494)
Q Consensus 236 ~lVlDEaD~ml~ 247 (494)
+|+|||+|.|+.
T Consensus 133 vl~iDEid~l~~ 144 (309)
T 3syl_A 133 VLFIDEAYYLYR 144 (309)
T ss_dssp EEEEETGGGSCC
T ss_pred EEEEEChhhhcc
Confidence 899999999873
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.97 E-value=0.013 Score=58.22 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=38.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcc--eecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVK--ITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~--~~~l~~l~ 235 (494)
++.++++||+|+|||...- .+...+... +...+++. ..++..+. ...+...... ...+.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~--------~~~~~~i~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 100 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR--------GYRVIYSS-ADDFAQAM------VEHLKKGTINEFRNMYKSVD 100 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT--------TCCEEEEE-HHHHHHHH------HHHHHHTCHHHHHHHHHTCS
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC--------CCEEEEEE-HHHHHHHH------HHHHHcCcHHHHHHHhcCCC
Confidence 4689999999999996432 233333322 22344443 33333222 1111110000 00123467
Q ss_pred EEEEcccchhcc
Q 042373 236 YLVLDEADRMFD 247 (494)
Q Consensus 236 ~lVlDEaD~ml~ 247 (494)
+|+|||+|.+..
T Consensus 101 vL~iDEi~~l~~ 112 (324)
T 1l8q_A 101 LLLLDDVQFLSG 112 (324)
T ss_dssp EEEEECGGGGTT
T ss_pred EEEEcCcccccC
Confidence 999999999874
No 109
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.92 E-value=0.012 Score=58.24 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=55.3
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
|-.+|++++-...+++.|... ...|.......... +..++.++++||+|+|||+..- .+.... + .
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~-v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~--ala~~~----------~-~ 75 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQEL-VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK--AIANEC----------Q-A 75 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-HHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH--HHHHHT----------T-C
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH--HHHHHh----------C-C
Confidence 456799987777777776642 00000000000000 1235789999999999997432 222221 1 2
Q ss_pred EEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 198 GLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 198 aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
.+|.+...+|.... .+...+..++... .-..-.++++||+|.|..
T Consensus 76 ~~i~v~~~~l~~~~~g~~~~~~~~~f~~a-----~~~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 76 NFISIKGPELLTMWFGESEANVREIFDKA-----RQAAPCVLFFDELDSIAK 122 (301)
T ss_dssp EEEEECHHHHHHHHHTTCTTHHHHHHHHH-----HHTCSEEEEECSTTHHHH
T ss_pred CEEEEEhHHHHhhhcCchHHHHHHHHHHH-----HhcCCeEEEEEChHHHhh
Confidence 23334444444322 1222233333321 011246899999999864
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.76 E-value=0.022 Score=54.22 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=44.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh--HHHhh-------------hhhhHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE--LVRQQ-------------VRRGRMIDLL 221 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre--La~Qi-------------~TPgrl~dll 221 (494)
.|.=+++.+++|+|||.+.+--+.+.. .. +-+++|+.|... ...++ .....+++.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~-~~--------g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i 81 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE-YA--------DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYI 81 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH-HT--------TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH-hc--------CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHH
Confidence 355567789999999976554444333 22 456787765431 22233 1223444444
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
... ..-.+.++||+||++.+.
T Consensus 82 ~~~----~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 82 MSN----SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp HST----TSCTTCCEEEECSGGGSC
T ss_pred HHH----hhCCCCCEEEEecCccCc
Confidence 431 112357899999998643
No 111
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.72 E-value=0.0091 Score=59.52 Aligned_cols=105 Identities=10% Similarity=0.165 Sum_probs=55.1
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH-----cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII-----SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-----~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~ 193 (494)
|-.+|+++.-...+++.|...= . .|. ..|.++ ..+.+++++|+|+|||...- .+...+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i-~--~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~-aia~~~---------- 75 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAV-I--LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK-AVATEA---------- 75 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHT-H--HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH-HHHHHH----------
T ss_pred CCCCHHHhcChHHHHHHHHHHH-H--HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH-HHHHHH----------
Confidence 4467999887788887776531 0 000 011111 23679999999999997432 222222
Q ss_pred CCCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 194 DSPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 194 ~~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-+|.... . +...+..++... .-..-.+|+|||+|.|..
T Consensus 76 -~~~-~~~v~~~~l~~~~~g~~~~~~~~~f~~a-----~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 76 -NST-FFSVSSSDLVSKWMGESEKLVKQLFAMA-----RENKPSIIFIDQVDALTG 124 (322)
T ss_dssp -TCE-EEEEEHHHHHTTTGGGHHHHHHHHHHHH-----HHTSSEEEEEECGGGGSC
T ss_pred -CCC-EEEEchHHHhhcccchHHHHHHHHHHHH-----HhcCCeEEEechhhhhhc
Confidence 222 3333334443322 1 222232333211 112346899999999875
No 112
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.58 E-value=0.044 Score=52.83 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+.+++++|+|+|||..... +...+ . .+...+.+|. .+.... .....+..++... ....-.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~-ia~~~-~---------~~~~~i~~~~-~~~g~~~~~~~~~~~~~~~~~-----~~~~~~v 127 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK-IAEES-N---------FPFIKICSPD-KMIGFSETAKCQAMKKIFDDA-----YKSQLSC 127 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH-HHHHH-T---------CSEEEEECGG-GCTTCCHHHHHHHHHHHHHHH-----HTSSEEE
T ss_pred eEEEEECCCCCcHHHHHHH-HHHHh-C---------CCEEEEeCHH-HhcCCchHHHHHHHHHHHHHH-----HhcCCcE
Confidence 5799999999999974322 22221 1 3444444553 221100 0112222333221 1234679
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|+|||+|.|+.
T Consensus 128 l~iDEid~l~~ 138 (272)
T 1d2n_A 128 VVVDDIERLLD 138 (272)
T ss_dssp EEECCHHHHTT
T ss_pred EEEEChhhhhc
Confidence 99999999964
No 113
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.52 E-value=0.025 Score=59.13 Aligned_cols=101 Identities=13% Similarity=0.220 Sum_probs=50.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcc--eeccc-ce
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVK--ITNLT-RV 234 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~--~~~l~-~l 234 (494)
++.++++||+|+|||...- .+...+....+ +..++++. ...+..++ ...+...... ...+. ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~~~------~~~v~~v~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 195 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQNEP------DLRVMYIT-SEKFLNDL------VDSMKEGKLNEFREKYRKKV 195 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHHCC------SSCEEEEE-HHHHHHHH------HHHHHTTCHHHHHHHHTTTC
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhCC------CCeEEEee-HHHHHHHH------HHHHHcccHHHHHHHhcCCC
Confidence 4689999999999996432 23333322210 22344443 33333322 2222211100 00123 56
Q ss_pred EEEEEcccchhccc-CChhHHHHHHHhh-cCCCcEEEecC
Q 042373 235 TYLVLDEADRMFDM-GFEPQITRIVQNI-RPDRQAVLFSP 272 (494)
Q Consensus 235 ~~lVlDEaD~ml~~-gf~~~i~~Il~~l-~~~~Q~ilfSA 272 (494)
.+|+|||+|.+... .....+..++..+ ..+.++|+.|.
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 79999999998853 2233444444443 33455555443
No 114
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.51 E-value=0.09 Score=57.00 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~ 212 (494)
.|+|+|...+-.+-..+-+++..+-|+|||.+...-++..+...+ +..+++++||++.|..+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-------~~~i~~va~t~~qA~~~~ 225 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-------DKAVGILAHKGSMSAEVL 225 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-------SCEEEEEESSHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-------CCeEEEEECCHHHHHHHH
Confidence 589999999887755688999999999999887765555554432 568999999999998863
No 115
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.48 E-value=0.024 Score=63.85 Aligned_cols=62 Identities=24% Similarity=0.183 Sum_probs=49.3
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++.|..|+-.++.+.-+++.||+|||||... .-++.++.... +.++|+++||...+.++
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~~-------~~~ilv~a~tn~A~~~l 416 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG-------NGPVLVCAPSNIAVDQL 416 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTTC-------SSCEEEEESSHHHHHHH
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHcC-------CCcEEEEcCcHHHHHHH
Confidence 4578999999999998888899999999999764 34555555421 56899999999887775
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.09 Score=52.74 Aligned_cols=26 Identities=8% Similarity=-0.115 Sum_probs=19.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
+.++++.||+|+|||++.- -++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999997543 3445554
No 117
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.33 E-value=0.022 Score=56.73 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=49.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH-cCCCCCCCCCCCeEEEEccchhHHHhhh---hhhHHHHHHHhcCcceecccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW-EQPPVVPGDDSPVGLVMAPTGELVRQQV---RRGRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~-~~~~~~~~~~~p~aLIl~PTreLa~Qi~---TPgrl~dll~~~~~~~~~l~~ 233 (494)
+++++++||+|+|||.... .+...+. .. +..++++. .-+|..++. ..+.+.. ....+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~~~~--------g~~v~~~~-~~~l~~~l~~~~~~~~~~~-------~~~~~~~ 214 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELSEKK--------GVSTTLLH-FPSFAIDVKNAISNGSVKE-------EIDAVKN 214 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHHHHS--------CCCEEEEE-HHHHHHHHHCCCC----CC-------TTHHHHT
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHhc--------CCcEEEEE-HHHHHHHHHHHhccchHHH-------HHHHhcC
Confidence 6899999999999996433 3333343 22 33344332 224444331 1111100 0112456
Q ss_pred eEEEEEcccchhc--ccCChhHHHHHHHhh-cCCCcEEEecCCCChH
Q 042373 234 VTYLVLDEADRMF--DMGFEPQITRIVQNI-RPDRQAVLFSPTFPPR 277 (494)
Q Consensus 234 l~~lVlDEaD~ml--~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~ 277 (494)
..+|||||++... .+.....+..++... .....+|+.|..-+..
T Consensus 215 ~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~ 261 (308)
T 2qgz_A 215 VPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFAD 261 (308)
T ss_dssp SSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHH
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHH
Confidence 6799999996533 222122334355433 2344566655544333
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.23 E-value=0.057 Score=53.94 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.++.++++||+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 357899999999999964
No 119
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.14 E-value=0.047 Score=57.26 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=27.0
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.++.|+.|||||... ..+... ...+|++||++++..+
T Consensus 164 ~~I~G~aGsGKTt~I-----~~~~~~---------~~~lVlTpT~~aa~~l 200 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI-----LSRVNF---------EEDLILVPGRQAAEMI 200 (446)
T ss_dssp EEEEECTTSCHHHHH-----HHHCCT---------TTCEEEESCHHHHHHH
T ss_pred EEEEcCCCCCHHHHH-----HHHhcc---------CCeEEEeCCHHHHHHH
Confidence 467899999999743 222221 2459999999999876
No 120
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.13 E-value=0.021 Score=53.42 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=13.3
Q ss_pred EEEEcCCCCCchhhhH
Q 042373 161 SVAITETGSGKTLAFL 176 (494)
Q Consensus 161 vi~~a~TGSGKTlafl 176 (494)
.+++|+.|||||+...
T Consensus 8 ~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 5789999999998543
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.13 E-value=0.034 Score=51.55 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=38.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++.++++||+|+|||.... -+...+... +..++++ ...++..... +.+ ..+.+..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~-~l~~~~~~~--------~~~~~~~-~~~~~~~~~~------~~~-------~~~~~~~v 107 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH-AACARANEL--------ERRSFYI-PLGIHASIST------ALL-------EGLEQFDL 107 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH-HHHHHHHHT--------TCCEEEE-EGGGGGGSCG------GGG-------TTGGGSSE
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHHc--------CCeEEEE-EHHHHHHHHH------HHH-------HhccCCCE
Confidence 46889999999999996432 333333322 2233333 3333332210 111 12345678
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|||||+|.+..
T Consensus 108 liiDe~~~~~~ 118 (242)
T 3bos_A 108 ICIDDVDAVAG 118 (242)
T ss_dssp EEEETGGGGTT
T ss_pred EEEeccccccC
Confidence 99999998864
No 122
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.027 Score=63.55 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+..+++-|..|+-.++.+.-+++.||.|||||.... -++.++.... +.++|+++||...+.++
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~~-------~~~ILv~a~tn~A~d~l 420 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKIH-------KDRILVCAPSNVAVDHL 420 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHHH-------CCCEEEEESSHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhCC-------CCeEEEEcCcHHHHHHH
Confidence 345789999999999987778999999999997543 3444443311 56899999999888776
No 123
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.021 Score=59.85 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.+|++++-.+...+.|.+. -+..|.-++...++ -.+.+|++||+|+|||+..- .+...+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllAk-AiA~e~----------- 239 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLAR-ACAAQT----------- 239 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHHH-HHHHHH-----------
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHHH-HHHHHh-----------
Confidence 5678999999888877777642 11122222221111 23789999999999997422 222222
Q ss_pred CCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-+|.... + +...+..++... .-..-++|++||+|.++.
T Consensus 240 ~~~-f~~v~~s~l~~~~vGese~~ir~lF~~A-----~~~aP~IifiDEiDal~~ 288 (434)
T 4b4t_M 240 NAT-FLKLAAPQLVQMYIGEGAKLVRDAFALA-----KEKAPTIIFIDELDAIGT 288 (434)
T ss_dssp TCE-EEEEEGGGGCSSCSSHHHHHHHHHHHHH-----HHHCSEEEEEECTHHHHC
T ss_pred CCC-EEEEehhhhhhcccchHHHHHHHHHHHH-----HhcCCeEEeecchhhhhh
Confidence 222 3333333443322 2 222333333321 112346899999999874
No 124
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.09 E-value=0.048 Score=54.46 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH-----cCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII-----SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-----~grdvi~~a~TGSGKTla 174 (494)
|-.+|++++=...+++.|++.= . .|++ .|.++ ..+.++++||+|+|||..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v-~--~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAV-I--LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-H--HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 4468999887777777765420 0 0000 01111 236899999999999963
No 125
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.06 E-value=0.17 Score=47.10 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc--cc------hhHHHhhh-------------hhh--
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA--PT------GELVRQQV-------------RRG-- 215 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~--PT------reLa~Qi~-------------TPg-- 215 (494)
-.+++..++|.|||.+.+--.++.+-. |-+++|+- +. ..+..+.. ++.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcH
Confidence 479999999999999888777777754 55677772 21 12333321 111
Q ss_pred ----HHHHHHHhcCcceecccceEEEEEcccchhcccCCh--hHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 216 ----RMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFE--PQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 216 ----rl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~--~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
.....+..- .+.+.-.++++|||||+-..+..++. +.+..++...+...-+|+.+--.|+++..++.
T Consensus 100 ~~~~~a~~~l~~a-~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 100 ADTAACMAVWQHG-KRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp HHHHHHHHHHHHH-HHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred HHHHHHHHHHHHH-HHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 011111110 01111256899999999887777753 45666666666666777777778888877764
No 126
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.94 E-value=0.035 Score=58.94 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=38.9
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
.+.+++++|+|+|||+..- .+..-. + .-++.+..-++.... .+.+.+..++... .-..-.
T Consensus 238 ~~~vLL~GppGtGKT~lAr--aia~~~----------~-~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A-----~~~~p~ 299 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR--AVANET----------G-AFFFLINGPEIMSKLAGESESNLRKAFEEA-----EKNAPA 299 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH--HHHHHC----------S-SEEEEEEHHHHHTSCTTHHHHHHHHHHHHH-----HHTCSE
T ss_pred CCcEEEECcCCCCHHHHHH--HHHHHh----------C-CCEEEEEchHhhhhhcchhHHHHHHHHHHH-----HhcCCc
Confidence 4689999999999997432 222211 1 123333334443332 1223333333321 112236
Q ss_pred EEEEcccchhcc
Q 042373 236 YLVLDEADRMFD 247 (494)
Q Consensus 236 ~lVlDEaD~ml~ 247 (494)
+|+|||+|.|..
T Consensus 300 iLfLDEId~l~~ 311 (489)
T 3hu3_A 300 IIFIDELDAIAP 311 (489)
T ss_dssp EEEEESHHHHCB
T ss_pred EEEecchhhhcc
Confidence 899999999885
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.86 E-value=0.048 Score=49.49 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
..++++|++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999963
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.85 E-value=0.11 Score=51.32 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC--CE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL--DS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr--dv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
.+|+++--++.+++.|.. .+..|+ ++ ++.+|+|+|||..... +...+ +..
T Consensus 23 ~~~~~ivg~~~~~~~l~~---------------~l~~~~~~~~~L~~G~~G~GKT~la~~-la~~l-----------~~~ 75 (324)
T 3u61_B 23 STIDECILPAFDKETFKS---------------ITSKGKIPHIILHSPSPGTGKTTVAKA-LCHDV-----------NAD 75 (324)
T ss_dssp CSTTTSCCCHHHHHHHHH---------------HHHTTCCCSEEEECSSTTSSHHHHHHH-HHHHT-----------TEE
T ss_pred CCHHHHhCcHHHHHHHHH---------------HHHcCCCCeEEEeeCcCCCCHHHHHHH-HHHHh-----------CCC
Confidence 456666666666655543 112333 44 5567799999974322 22222 334
Q ss_pred EEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 198 GLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 198 aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
.+.+..+..-...+ ...+..+.... .......+||+||+|.|........+..+++..+...++|+
T Consensus 76 ~~~i~~~~~~~~~i--~~~~~~~~~~~----~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 76 MMFVNGSDCKIDFV--RGPLTNFASAA----SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp EEEEETTTCCHHHH--HTHHHHHHHBC----CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred EEEEcccccCHHHH--HHHHHHHHhhc----ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 55554432111111 01111222211 12346789999999998622223344444554444444444
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.73 E-value=0.081 Score=46.02 Aligned_cols=19 Identities=16% Similarity=-0.069 Sum_probs=16.6
Q ss_pred HHcCCCEEEEcCCCCCchh
Q 042373 155 IISGLDSVAITETGSGKTL 173 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTl 173 (494)
...+.++++++++|+|||.
T Consensus 24 ~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HTCSSCEEEEEETTCCHHH
T ss_pred hCCCCcEEEECCCCccHHH
Confidence 4567899999999999996
No 130
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.58 E-value=0.068 Score=46.59 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=16.9
Q ss_pred HcCCCEEEEcCCCCCchhhh
Q 042373 156 ISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlaf 175 (494)
..+.++++.+++|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46689999999999999743
No 131
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.57 E-value=0.088 Score=49.84 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=28.2
Q ss_pred CCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 121 KTWRQTGLTTKILETFSKLN--HENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
.+|+++.-...+++.|+++- +..|..+... -+-..+.+++++|+|+|||..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHH
Confidence 46777765666666664420 1112111111 012346899999999999964
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.53 E-value=0.086 Score=52.49 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
++.++++|++|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57899999999999964
No 133
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.33 E-value=0.065 Score=54.72 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=29.9
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHH---------HcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALI---------ISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~i---------l~grdvi~~a~TGSGKTla 174 (494)
+-.+|+++.-...+++.|...- .+|.. ...+.+++++|+|+|||..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIV----------ILPSLRPELFTGLRAPARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHT----------HHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHH----------HHhccCHHHhcccCCCCceEEEECCCCCCHHHH
Confidence 3457888766666666665421 11111 1357899999999999964
No 134
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.26 E-value=0.052 Score=58.92 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=46.3
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++-|.+++- .....+++.|+.|||||...+--+...+.... ...-.+|++++|+..+.++
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~ 70 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEM 70 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHH
Confidence 468999999997 33678999999999999865554444443211 1123799999999988876
No 135
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.22 E-value=0.16 Score=50.78 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=52.0
Q ss_pred CChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC-------------CCCCeEEEEcc
Q 042373 144 PVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG-------------DDSPVGLVMAP 203 (494)
Q Consensus 144 ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~-------------~~~p~aLIl~P 203 (494)
..|+|..++..+. +|+ -+++.||.|+|||.... -+...+......... ...|..+++.|
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 81 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAP 81 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec
Confidence 4688888776554 444 48999999999996443 344555432211000 01245566665
Q ss_pred c---hhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 204 T---GELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 204 T---reLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
. ... ....+.+++..-.. .-....-+++|+||||.|..
T Consensus 82 ~~~~~~~-----~i~~ir~l~~~~~~-~~~~~~~kvviIdead~l~~ 122 (334)
T 1a5t_A 82 EKGKNTL-----GVDAVREVTEKLNE-HARLGGAKVVWVTDAALLTD 122 (334)
T ss_dssp CTTCSSB-----CHHHHHHHHHHTTS-CCTTSSCEEEEESCGGGBCH
T ss_pred cccCCCC-----CHHHHHHHHHHHhh-ccccCCcEEEEECchhhcCH
Confidence 3 111 11112233322110 11235678999999999864
No 136
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.03 E-value=0.19 Score=45.85 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=13.3
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
.++++|++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999964
No 137
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.01 E-value=0.076 Score=53.69 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=30.0
Q ss_pred CCCcccCCCCHHHHHHHHhCCC---CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 120 IKTWRQTGLTTKILETFSKLNH---ENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~---~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
-.+|+++.-...+++.|.+.=. ..|..... .....+.+++++|+|+|||...
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~----~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG----LRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCG----GGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhh----ccCCCceEEEECCCCCCHHHHH
Confidence 4578887666666666654200 00000000 0123578999999999999743
No 138
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.94 E-value=0.03 Score=58.57 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCCCCcccCCCCHHHHHHHHhCC-C--CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 118 KPIKTWRQTGLTTKILETFSKLN-H--ENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g-~--~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
.|-.+|++++-...+.+.|...- + ..|.-++. .....+.++++||+|+|||+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG----GGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc----cCCCCceEEEECCCCCCHHHH
Confidence 34578999877777777775420 0 00110000 012247899999999999964
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.80 E-value=0.37 Score=47.76 Aligned_cols=40 Identities=10% Similarity=0.300 Sum_probs=25.9
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
.+-+++|+||+|. ++......+..++...+....+|+.|.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~ 172 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCD 172 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 4667999999999 444445566666666555555555544
No 140
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.077 Score=54.96 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=56.2
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
|-.+|+++|=-....+.|++. .. .|+.. |.++ -.+.+|++||+|+|||+..- .+...+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~-v~--~Pl~~---pe~f~~~gi~~prGvLL~GPPGTGKTllAk-AiA~e~--------- 206 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEV-IE--LPVKH---PELFESLGIAQPKGVILYGPPGTGKTLLAR-AVAHHT--------- 206 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHH-TH--HHHHC---HHHHHHHTCCCCCCEEEESCSSSSHHHHHH-HHHHHH---------
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HH--HHHhC---HHHHHhCCCCCCCceEEeCCCCCCHHHHHH-HHHHhh---------
Confidence 557899997666666666543 11 11111 2222 23789999999999997432 222222
Q ss_pred CCCCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 193 DDSPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+...+.+.. -+|.... + +...+..++... .-..-++|.+||+|.++.
T Consensus 207 --~~~f~~v~~-s~l~sk~vGese~~vr~lF~~A-----r~~aP~IIFiDEiDai~~ 255 (405)
T 4b4t_J 207 --DCKFIRVSG-AELVQKYIGEGSRMVRELFVMA-----REHAPSIIFMDEIDSIGS 255 (405)
T ss_dssp --TCEEEEEEG-GGGSCSSTTHHHHHHHHHHHHH-----HHTCSEEEEEESSSCCTT
T ss_pred --CCCceEEEh-HHhhccccchHHHHHHHHHHHH-----HHhCCceEeeecchhhcc
Confidence 223333333 3333322 2 333444444321 112346889999999874
No 141
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.74 E-value=0.1 Score=57.37 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------- 211 (494)
.+|.-|++++..++.- .-.++.|.-|.|||.+..+.+- .+. + .++|.+||.+-+..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~----------~-~~~vtAP~~~a~~~l~~~~~~~i~ 242 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA----------G-RAIVTAPAKASTDVLAQFAGEKFR 242 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS----------S-CEEEECSSCCSCHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH----------h-CcEEECCCHHHHHHHHHHhhCCeE
Confidence 6899999999988862 3468889999999965554333 221 1 358999998765432
Q ss_pred -hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 212 -VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 212 -~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
..|..+ +. .+...++||||||=.+- .+.+..++... ..++||.|.
T Consensus 243 ~~~Pd~~---~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~----~~v~~~tTv 288 (671)
T 2zpa_A 243 FIAPDAL---LA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF----PRTLLTTTV 288 (671)
T ss_dssp BCCHHHH---HH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----SEEEEEEEB
T ss_pred EeCchhh---hh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----CeEEEEecC
Confidence 223221 11 24458999999997543 45555555532 235555554
No 142
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.74 E-value=0.099 Score=50.79 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCCcccCCCCHHHHHHHHhCC-C--CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLN-H--ENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g-~--~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
|-.+|+++.=...+++.|...= . ..|.-.. .....++.++++||+|+|||..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFT----GLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSC----GGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHh----cCCCCCCeEEEECcCCCCHHHH
Confidence 4467888876777777765421 0 0000000 0001357899999999999974
No 143
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.67 E-value=0.16 Score=50.27 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=38.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
..++++|++|+|||...-. +.+... .+...+-++.. ...+.+...+.. +..-.+|+
T Consensus 56 ~~vll~G~~GtGKT~la~~--ia~~~~---------~~~~~~~~~~~------~~~~~~~~~~~~-------~~~~~vl~ 111 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI--ISYEMS---------ANIKTTAAPMI------EKSGDLAAILTN-------LSEGDILF 111 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH--HHHHTT---------CCEEEEEGGGC------CSHHHHHHHHHT-------CCTTCEEE
T ss_pred CeEEEECcCCCCHHHHHHH--HHHHhC---------CCeEEecchhc------cchhHHHHHHHh-------ccCCCEEE
Confidence 5899999999999974322 222111 33333333332 233445555543 33457899
Q ss_pred Ecccchhc
Q 042373 239 LDEADRMF 246 (494)
Q Consensus 239 lDEaD~ml 246 (494)
|||+|.|.
T Consensus 112 lDEi~~l~ 119 (338)
T 3pfi_A 112 IDEIHRLS 119 (338)
T ss_dssp EETGGGCC
T ss_pred EechhhcC
Confidence 99999886
No 144
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.65 E-value=0.095 Score=49.80 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=30.4
Q ss_pred CCCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHH--cCCCEEEEcCCCCCchh
Q 042373 118 KPIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALII--SGLDSVAITETGSGKTL 173 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il--~grdvi~~a~TGSGKTl 173 (494)
.|-.+|+++.-.+.+...++.+- |..+ ..+..+- -.+.+++++|+|+|||.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTt 64 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTH 64 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHH
Confidence 35568888877777666665431 1111 1111110 12459999999999996
No 145
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.63 E-value=0.6 Score=45.00 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.++.++++||+|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 367899999999999964
No 146
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.62 E-value=0.13 Score=51.86 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=28.9
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH-----cCCCEEEEcCCCCCchhhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII-----SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-----~grdvi~~a~TGSGKTlaf 175 (494)
|-.+|++++-...+++.|... +.. | .-.|.++ ..+.+++++|+|+|||+..
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~-v~~--~---~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEA-VIL--P---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHH-THH--H---HHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHH--H---HhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 345788876555666666442 000 0 0001111 2367999999999999743
No 147
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.58 E-value=0.2 Score=52.26 Aligned_cols=53 Identities=13% Similarity=0.304 Sum_probs=38.1
Q ss_pred cceEEEEEcccchhc---ccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMF---DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml---~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
...+++|+|.+.++- +..+...+..+...+.++.-+++++|+........++.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~ 233 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASR 233 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHH
Confidence 478899999998754 34456677778888877777788888876655555443
No 148
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.11 Score=54.37 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=55.8
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
+|-.+|++++=-....+.|++. -+..|.-++... +--.+-+|++||+|+|||+..- .+...+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk-AiA~e~----------- 239 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK-AVAATI----------- 239 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH-HHHHHH-----------
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH-HHHHHh-----------
Confidence 4556799988666666666542 011111111110 0123789999999999997432 222222
Q ss_pred CCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-+|.... .+...+..++... ....-++|.+||+|.++.
T Consensus 240 ~~~-~~~v~~s~l~sk~~Gese~~ir~~F~~A-----~~~~P~IifiDEiDai~~ 288 (437)
T 4b4t_L 240 GAN-FIFSPASGIVDKYIGESARIIREMFAYA-----KEHEPCIIFMDEVDAIGG 288 (437)
T ss_dssp TCE-EEEEEGGGTCCSSSSHHHHHHHHHHHHH-----HHSCSEEEEEECCCSSSC
T ss_pred CCC-EEEEehhhhccccchHHHHHHHHHHHHH-----HhcCCceeeeeccccccc
Confidence 222 3333333333222 2223333333321 123446899999999874
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.50 E-value=0.12 Score=51.73 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=14.0
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
.++++||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999743
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.19 Score=52.98 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCCCCcccCCCCHHHHHHHHhC-C--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL-N--HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~-g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|=.+|++++=-..+.+.|++. - +..|--++..- +--.+.+|+++|+|+|||+..- .+...+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAk-AiA~e~----------- 267 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCAR-AVANRT----------- 267 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHH-HHHHHH-----------
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHH-HHHhcc-----------
Confidence 4557899998777777777653 1 11111111110 1124789999999999997332 222222
Q ss_pred CCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+. .++.+..-+|.... + +...+..++... ....-++|++||+|.++.
T Consensus 268 ~~-~fi~vs~s~L~sk~vGesek~ir~lF~~A-----r~~aP~IIfiDEiDai~~ 316 (467)
T 4b4t_H 268 DA-TFIRVIGSELVQKYVGEGARMVRELFEMA-----RTKKACIIFFDEIDAVGG 316 (467)
T ss_dssp TC-EEEEEEGGGGCCCSSSHHHHHHHHHHHHH-----HHTCSEEEEEECCTTTSB
T ss_pred CC-CeEEEEhHHhhcccCCHHHHHHHHHHHHH-----HhcCCceEeecccccccc
Confidence 22 24444444444332 2 333344444321 122346899999999874
No 151
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.38 E-value=0.31 Score=48.68 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
++.++++||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999643
No 152
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.24 E-value=0.072 Score=52.36 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+-+++++|+|+|||...- .+...+ +...+.+ ..-+|.... .+++.+..++.... ....-..-.+
T Consensus 37 ~~lLl~GppGtGKT~la~-aiA~~l-----------~~~~i~v-~~~~l~~~~~g~~~~~i~~~f~~a~-~~~~~~~~~v 102 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE-LVFRKM-----------GINPIMM-SAGELESGNAGEPAKLIRQRYREAA-EIIRKGNMCC 102 (293)
T ss_dssp SEEEEEECTTSCHHHHHH-HHHHHH-----------TCCCEEE-EHHHHHCC---HHHHHHHHHHHHHH-HHHTTSSCCC
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHh-----------CCCEEEE-eHHHhhhccCchhHHHHHHHHHHHH-HHHhcCCCeE
Confidence 568999999999996332 233332 2122333 223333222 24444544443320 0001223468
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|+|||+|.+..
T Consensus 103 l~iDEiD~~~~ 113 (293)
T 3t15_A 103 LFINDLDAGAG 113 (293)
T ss_dssp EEEECCC----
T ss_pred EEEechhhhcC
Confidence 99999999875
No 153
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.22 E-value=0.19 Score=47.78 Aligned_cols=53 Identities=19% Similarity=0.148 Sum_probs=30.0
Q ss_pred CCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
+-.+|+++.-.+.+++.|..+- +..|..++... +...+.+++++|+|+|||..
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHH
Confidence 3467888877777776665420 11111111110 11245799999999999964
No 154
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.12 E-value=0.23 Score=45.95 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT 204 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT 204 (494)
|+=.+++++.|||||.+.+- ++.+.... +-+++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~~~--------g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAKIA--------KQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHHHT--------TCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHHHC--------CCEEEEEEec
Confidence 44467789999999976554 34333322 5578888665
No 155
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.06 E-value=0.24 Score=46.09 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=43.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hhHHHhhhhhhH----------HHHHHHh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GELVRQQVRRGR----------MIDLLCK 223 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---reLa~Qi~TPgr----------l~dll~~ 223 (494)
.|+=.+++++.|||||.-.+- .+.+.... +.+++++.|. |.. ..+.+-.. +.+++.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~-~i~n~~~~--------~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d~~~- 87 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMR-RVRRFQIA--------QYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQ- 87 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHH-HHHHHHHT--------TCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGGGHH-
T ss_pred ceEEEEEECCCCCcHHHHHHH-HHHHHHHc--------CCeEEEEccccCccch-hhhhhccCCcccceecCCHHHHHH-
Confidence 366678889999999954433 34333322 4578999887 644 33422111 111111
Q ss_pred cCcceecccceEEEEEcccchh
Q 042373 224 NGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~m 245 (494)
..+++++|++|||+-+
T Consensus 88 ------~~~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 88 ------EALGVAVIGIDEGQFF 103 (195)
T ss_dssp ------HHHTCSEEEESSGGGC
T ss_pred ------hccCCCEEEEEchhhh
Confidence 1346789999999976
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.88 E-value=0.3 Score=51.92 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
+.++++||+|+|||...
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999743
No 157
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.23 E-value=0.21 Score=47.61 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.+..+++++++|+|||.
T Consensus 28 ~~~~vll~G~~GtGKt~ 44 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKEL 44 (265)
T ss_dssp SCSCEEEECCTTSCHHH
T ss_pred CCCCEEEECCCCCcHHH
Confidence 46899999999999996
No 158
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.14 E-value=0.19 Score=52.37 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=55.6
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.+|+++|=-..+.+.|++. -+..|.-++..-+ --.+-+|+++|+|+|||+..- .+...+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk-AiA~e~----------- 240 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK-AVANQT----------- 240 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH-HHHHHH-----------
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH-HHHHHh-----------
Confidence 4567899997555555555432 1122222222111 123789999999999997322 222222
Q ss_pred CCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-+|.... + +...+..++... .-..-++|.+||+|.++.
T Consensus 241 ~~~-fi~v~~s~l~sk~vGesek~ir~lF~~A-----r~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 241 SAT-FLRIVGSELIQKYLGDGPRLCRQIFKVA-----GENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp TCE-EEEEESGGGCCSSSSHHHHHHHHHHHHH-----HHTCSEEEEEEEESSSSC
T ss_pred CCC-EEEEEHHHhhhccCchHHHHHHHHHHHH-----HhcCCcEEEEehhhhhcc
Confidence 222 3333333333222 2 333333333321 112336899999999874
No 159
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.13 E-value=0.46 Score=49.54 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=56.6
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.+|++.|=-..+.+.|.+. -+..|--++..- +--.|-++++||+|+|||+..- .+...+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~lak-AiA~~~----------- 230 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLVK-AVANST----------- 230 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHHH-HHHHHH-----------
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHHH-HHHHHh-----------
Confidence 3456899987666666665442 011111111110 0123679999999999997432 222222
Q ss_pred CCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-++.... .++..+.+++... .-..-+++++||+|.++.
T Consensus 231 ~~~-~~~v~~~~l~~~~~Ge~e~~ir~lF~~A-----~~~aP~IifiDEiD~i~~ 279 (428)
T 4b4t_K 231 KAA-FIRVNGSEFVHKYLGEGPRMVRDVFRLA-----RENAPSIIFIDEVDSIAT 279 (428)
T ss_dssp TCE-EEEEEGGGTCCSSCSHHHHHHHHHHHHH-----HHTCSEEEEEECTHHHHC
T ss_pred CCC-eEEEecchhhccccchhHHHHHHHHHHH-----HHcCCCeeechhhhhhhc
Confidence 222 3333333333222 3444455555431 112336889999999874
No 160
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.11 E-value=0.14 Score=60.36 Aligned_cols=64 Identities=25% Similarity=0.154 Sum_probs=49.3
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.+|+-|.++|-.- ++++++.|.-|||||.+.+--++..+..... ....-..|+|++|+..|..+
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~ 73 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEM 73 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHH
Confidence 6899999998654 8899999999999998877666766654211 01134799999999988877
No 161
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.00 E-value=0.41 Score=46.49 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=46.8
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
.++++||+|+|||...- -+...+.... . ....+.+.+........ .-..+.++..... ....+-.++|+
T Consensus 48 ~~ll~G~~G~GKT~la~-~l~~~l~~~~-----~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~vlii 116 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL-ALARELFGEN-----W-RHNFLELNASDERGINV-IREKVKEFARTKP---IGGASFKIIFL 116 (327)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHHHGGG-----H-HHHEEEEETTCHHHHHT-THHHHHHHHHSCC---GGGCSCEEEEE
T ss_pred eEEEECcCCCCHHHHHH-HHHHHhcCCc-----c-cCceEEeeccccCchHH-HHHHHHHHHhhCC---cCCCCCeEEEE
Confidence 69999999999996432 2333332110 0 11233333322111110 0011222222111 11145679999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEe
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLF 270 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilf 270 (494)
||+|.|... ....+..+++..+....+|+.
T Consensus 117 De~~~l~~~-~~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 117 DEADALTQD-AQQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp ETGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred eCCCcCCHH-HHHHHHHHHHhcCCCCeEEEE
Confidence 999998642 233444455544444444443
No 162
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.87 E-value=0.21 Score=49.30 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=22.9
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
....+|++||+|.|... ....+..+++..+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35579999999998642 2234445555544444444433
No 163
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.85 E-value=0.52 Score=47.30 Aligned_cols=78 Identities=22% Similarity=0.217 Sum_probs=40.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh--h-hh-hhHHHHHHHhcCcceeccc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ--Q-VR-RGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q--i-~T-Pgrl~dll~~~~~~~~~l~ 232 (494)
.++.+++++|+|+|||...- .+...+. .|...+-+ -++... + .+ .+.+..++..... .+...
T Consensus 50 ~~~~vll~GppGtGKT~la~--~ia~~~~---------~~~~~~~~--~~l~~~~~~g~~~~~~~~~~~~~~~~-~~~~~ 115 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE--TLARLLD---------VPFTMADA--TTLTEAGYVGEDVENIIQKLLQKCDY-DVQKA 115 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH--HHHHHTT---------CCEEEEEH--HHHTTCHHHHHHHTHHHHHHHHHTTT-CHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH--HHHHHcC---------CCEEEech--HHhcccccccccHHHHHHHHHHHhhh-hHHhc
Confidence 45789999999999997432 2333321 33333322 233221 1 11 2233344433211 11112
Q ss_pred ceEEEEEcccchhccc
Q 042373 233 RVTYLVLDEADRMFDM 248 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~ 248 (494)
.-.+|+|||+|.|...
T Consensus 116 ~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 116 QRGIVYIDQIDKISRK 131 (363)
T ss_dssp HHCEEEEECHHHHCCC
T ss_pred CCcEEEEeChhhhccc
Confidence 3458999999998754
No 164
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=91.83 E-value=0.13 Score=56.46 Aligned_cols=62 Identities=16% Similarity=0.032 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.+++-|.+++-. .+..+++.|..|||||.+.+--+...+.... ......|+|+.|+..|.++
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em 63 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREM 63 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHH
Confidence 478999999865 3678999999999999876555554443311 0134699999999888776
No 165
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.73 E-value=0.22 Score=55.29 Aligned_cols=63 Identities=17% Similarity=0.040 Sum_probs=46.4
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++-|.+++-. ....+++.|..|||||.+..--+...+.... ......|+|+.|+..|.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em 72 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREM 72 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHH
Confidence 4689999999865 3578999999999999876555554444321 1134699999999887775
No 166
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.35 E-value=0.26 Score=47.51 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=30.6
Q ss_pred CCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHH--cCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALII--SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il--~grdvi~~a~TGSGKTla 174 (494)
|-.+|+++.-.+.+...++.+- |.. ...+..+- -.+.+++++|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 4567888877777777665431 111 01111110 124599999999999963
No 167
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.05 E-value=0.67 Score=45.98 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=23.9
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEe
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLF 270 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilf 270 (494)
...+++|+||+|.|... ....+..+++..+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 35789999999988642 234455556655544555444
No 168
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.94 E-value=0.47 Score=53.37 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=60.7
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhC-CC--CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 116 APKPIKTWRQTGLTTKILETFSKL-NH--ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~~-g~--~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
+..|-.+|++++.-..+.+.|++. -+ ..|.-++..- +-..+-+++.+|.|+|||+.. ..+....
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA-----kaiA~e~----- 535 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA-----KAIANEC----- 535 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH-----HHHHHTT-----
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH-----HHHHHHh-----
Confidence 345667899999888888888764 11 1111111100 012367999999999999632 2222211
Q ss_pred CCCCeEEEEccchhHHHhh-hh-hhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 193 DDSPVGLVMAPTGELVRQQ-VR-RGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi-~T-Pgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+ .-+|.+-.-+|.... +. ...+..++..- .-..-++|+|||+|.++.
T Consensus 536 --~-~~f~~v~~~~l~s~~vGese~~vr~lF~~A-----r~~~P~IifiDEiDsl~~ 584 (806)
T 3cf2_A 536 --Q-ANFISIKGPELLTMWFGESEANVREIFDKA-----RQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp --T-CEEEECCHHHHHTTTCSSCHHHHHHHHHHH-----HTTCSEEEECSCGGGCC-
T ss_pred --C-CceEEeccchhhccccchHHHHHHHHHHHH-----HHcCCceeechhhhHHhh
Confidence 2 234445445554433 22 23344444321 112336899999999874
No 169
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.83 E-value=0.45 Score=53.52 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+.+|+++|.|+|||+. ...+.... + .-++.+..-+|.... .+..++..++.... ...-.+
T Consensus 239 ~GILL~GPPGTGKT~L-----AraiA~el-------g-~~~~~v~~~~l~sk~~gese~~lr~lF~~A~-----~~~PsI 300 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI-----ARAVANET-------G-AFFFLINGPEIMSKLAGESESNLRKAFEEAE-----KNAPAI 300 (806)
T ss_dssp CEEEEECCTTSCHHHH-----HHHHHTTT-------T-CEEEEEEHHHHHSSCTTHHHHHHHHHHHHHT-----TSCSEE
T ss_pred CeEEEECCCCCCHHHH-----HHHHHHHh-------C-CeEEEEEhHHhhcccchHHHHHHHHHHHHHH-----HcCCeE
Confidence 6899999999999973 33333321 2 234555555555433 23344555554321 223468
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|+|||+|.++.
T Consensus 301 IfIDEiDal~~ 311 (806)
T 3cf2_A 301 IFIDELDAIAP 311 (806)
T ss_dssp EEEESGGGTCC
T ss_pred EEEehhccccc
Confidence 99999999984
No 170
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.82 E-value=0.51 Score=46.98 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46899999999999974
No 171
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.58 E-value=0.95 Score=42.66 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=25.5
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
|+=.+++++-|||||.+.+--+.+.... +-+++|+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---------g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---------KQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEecc
Confidence 3434577888999997655544444332 55788888764
No 172
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.51 E-value=0.7 Score=42.32 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|.-+++.+++|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 3567888999999999543
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.43 E-value=0.38 Score=46.98 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=37.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
.+.++++|++|+|||...- .+...+ . .+...+-++.. ..++.+...+.. .+..-.+|
T Consensus 38 ~~~vll~G~~GtGKT~la~-~i~~~~-~---------~~~~~~~~~~~------~~~~~l~~~l~~------~~~~~~~l 94 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH-VIAHEL-G---------VNLRVTSGPAI------EKPGDLAAILAN------SLEEGDIL 94 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH-HHHHHH-T---------CCEEEECTTTC------CSHHHHHHHHTT------TCCTTCEE
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHh-C---------CCEEEEecccc------CChHHHHHHHHH------hccCCCEE
Confidence 3789999999999996432 122222 1 22222222221 223344444432 13345689
Q ss_pred EEcccchhc
Q 042373 238 VLDEADRMF 246 (494)
Q Consensus 238 VlDEaD~ml 246 (494)
+|||+|.|.
T Consensus 95 ~lDEi~~l~ 103 (324)
T 1hqc_A 95 FIDEIHRLS 103 (324)
T ss_dssp EETTTTSCC
T ss_pred EEECCcccc
Confidence 999999876
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.42 E-value=0.37 Score=50.46 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.1
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
..+++++|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4799999999999974
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.37 E-value=0.24 Score=52.38 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=51.2
Q ss_pred CCCcccCCCCHHHHHHHHhC--CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 120 IKTWRQTGLTTKILETFSKL--NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~--g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
-.+|+++.=....++.|+.. .+..|..++... +--.+.+++++|+|+|||+..- .+..-.. .|.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~Lar--aia~~~~---------~~f 77 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLAR--AVAGEAN---------VPF 77 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHHH--HHHHHHT---------CCE
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHHH--HHHHHcC---------CCe
Confidence 45788876666665555432 011111110000 0012569999999999997432 2222111 222
Q ss_pred EEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 198 GLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 198 aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.+ ...++.... ....++..++... ....-++|+|||+|.|..
T Consensus 78 -~~i-s~~~~~~~~~g~~~~~~r~lf~~A-----~~~~p~ILfIDEid~l~~ 122 (476)
T 2ce7_A 78 -FHI-SGSDFVELFVGVGAARVRDLFAQA-----KAHAPCIVFIDEIDAVGR 122 (476)
T ss_dssp -EEE-EGGGTTTCCTTHHHHHHHHHHHHH-----HHTCSEEEEEETGGGTCC
T ss_pred -eeC-CHHHHHHHHhcccHHHHHHHHHHH-----HhcCCCEEEEechhhhhh
Confidence 222 222222211 1223344444331 112346899999999864
No 176
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.30 E-value=0.4 Score=53.94 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=39.1
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccce
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l 234 (494)
.++.+++++|+|||||... +.+.... +. .+|.+...++.... ....++..++... .....
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa-----rala~~l-------~~-~~i~v~~~~l~~~~~g~~~~~l~~vf~~a-----~~~~p 298 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA-----RAVANET-------GA-FFFLINGPEIMSKLAGESESNLRKAFEEA-----EKNAP 298 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH-----HHHHHTT-------TC-EEEEEEHHHHSSSSTTHHHHHHHHHHHHH-----HHHCS
T ss_pred CCCeEEEECcCCCCHHHHH-----HHHHHHc-------CC-cEEEEEchHhhhhhhhhHHHHHHHHHHHH-----HhcCC
Confidence 4678999999999999632 2222211 22 23333333433221 1222333333321 11234
Q ss_pred EEEEEcccchhccc
Q 042373 235 TYLVLDEADRMFDM 248 (494)
Q Consensus 235 ~~lVlDEaD~ml~~ 248 (494)
.++++||+|.++..
T Consensus 299 ~il~iDEid~l~~~ 312 (806)
T 1ypw_A 299 AIIFIDELDAIAPK 312 (806)
T ss_dssp EEEEEESGGGTSCT
T ss_pred cEEEeccHHHhhhc
Confidence 68999999998853
No 177
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.14 E-value=0.68 Score=48.25 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=54.4
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
|-..|+++.-...+++.+... +..+. .++.+++++|+|+|||.... .+...+ ..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~------------~~~~~~~~~~~~~iLl~GppGtGKT~la~-ala~~l-~~-------- 89 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVI------------VELIKSKKMAGRAVLLAGPPGTGKTALAL-AIAQEL-GS-------- 89 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHH------------HHHHHTTCCTTCEEEEECCTTSSHHHHHH-HHHHHH-CT--------
T ss_pred hhhchhhccCHHHHHHHHHHH------------HHHHHhCCCCCCeEEEECCCcCCHHHHHH-HHHHHh-CC--------
Confidence 445577776666666554421 11122 34689999999999996443 233332 11
Q ss_pred CCeEEEEccchhHHH-hhhhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 195 SPVGLVMAPTGELVR-QQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 195 ~p~aLIl~PTreLa~-Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
....+.+.. -++.. .+...+.+...+..... .....-.+|++||+|.++..
T Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~a~~--~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 90 KVPFCPMVG-SEVYSTEIKKTEVLMENFRRAIG--LRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp TSCEEEEEG-GGGCCSSSCHHHHHHHHHHHTEE--EEEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEeH-HHHHHHhhhhhHHHHHHHHHHHh--hhhcCCcEEEEechhhcccc
Confidence 112222222 22221 12222335555543210 12345578999999998853
No 178
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.82 E-value=0.34 Score=45.61 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHcC----CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 130 TKILETFSKLNHENPVAIQAPASALIISG----LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 130 ~~ll~~l~~~g~~~ptpiQ~~aip~il~g----rdvi~~a~TGSGKTlafllpil~~l 183 (494)
..|.+-|+-.|+ .+... ..++..++.+ +.+++.+|.|+|||..+ ..++..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 356666665554 23333 4555666665 35899999999999643 5566555
No 179
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.81 E-value=0.22 Score=48.45 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHH-HHHHHH--HcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQA-PASALI--ISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~-~aip~i--l~grdvi~~a~TGSGKTla 174 (494)
|-.+|++++-...+.+.|.+. + ..|+.. .++..+ .-.+.+++++|+|+|||..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~-i--~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA-I--LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHH-H--THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-H--HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 446799998777777777642 1 111111 111111 1124499999999999973
No 180
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.78 E-value=0.87 Score=47.28 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=21.2
Q ss_pred HHHHHcC----CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 152 SALIISG----LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 152 ip~il~g----rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
+-.++.| .=+++.|++|+|||. |++-+..++.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~-lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTA-FALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHH-HHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHH-HHHHHHHHHH
Confidence 4445533 456788999999994 5555555554
No 181
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.78 E-value=0.5 Score=44.72 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=43.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hhHHHhhhhhh----------HHHHHHHhc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GELVRQQVRRG----------RMIDLLCKN 224 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---reLa~Qi~TPg----------rl~dll~~~ 224 (494)
|.=.+++++-|||||...+-- +.+.... +.+++|+.|. |.....+++.- ...+++..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~~--------g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~- 97 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIYA--------KQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTH- 97 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHHT--------TCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGS-
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHHc--------CCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHH-
Confidence 455678899999999654433 4444332 5578888884 44333331110 01111110
Q ss_pred CcceecccceEEEEEcccchhcccCChhHHHHHH
Q 042373 225 GVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV 258 (494)
Q Consensus 225 ~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il 258 (494)
-..++.+|++|||+-+- ....+++..+.
T Consensus 98 -----i~~~~dvV~IDEaQFf~-~~~v~~l~~la 125 (219)
T 3e2i_A 98 -----DLTNVDVIGIDEVQFFD-DEIVSIVEKLS 125 (219)
T ss_dssp -----CCTTCSEEEECCGGGSC-THHHHHHHHHH
T ss_pred -----HhcCCCEEEEechhcCC-HHHHHHHHHHH
Confidence 02467899999998544 33444454444
No 182
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.75 E-value=0.31 Score=52.22 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|..+++++|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999963
No 183
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.20 E-value=1.2 Score=46.47 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=33.7
Q ss_pred ceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 233 RVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
..+++|+|.+-++.. ......+..+...+.++.-+++++||........++
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~ 233 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQAL 233 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHH
Confidence 478999999976542 123345666666666777777888887665554443
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.15 E-value=0.71 Score=46.55 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=24.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|.=+++.|++|+|||. |++-+..++... +..++|++
T Consensus 46 G~LiiIaG~pG~GKTt-~al~ia~~~a~~--------g~~Vl~fS 81 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTS-LMMNMVLSALND--------DRGVAVFS 81 (338)
T ss_dssp TCEEEEEECTTSCHHH-HHHHHHHHHHHT--------TCEEEEEE
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHHc--------CCeEEEEe
Confidence 4557788999999995 555555555432 44677775
No 185
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.89 E-value=0.77 Score=56.39 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=61.8
Q ss_pred HHHHHc------CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc----hhHHHhhh---------
Q 042373 152 SALIIS------GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT----GELVRQQV--------- 212 (494)
Q Consensus 152 ip~il~------grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT----reLa~Qi~--------- 212 (494)
+-.++. |+.+++++|+|+|||...+--+.... .+ |.+++++... ..++...+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~~--------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~ 1485 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-RE--------GKTCAFIDAEHALDPIYARKLGVDIDNLLCS 1485 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TT--------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEE
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--------CCcEEEEEcccccCHHHHHHcCCCchhceee
Confidence 666776 68999999999999976544444333 21 5567777644 22233221
Q ss_pred ---hhhHHHHHHHhcCcceecccceEEEEEcccchhccc-------C---C-------hhHHHHHHHhhcCCCcEEEecC
Q 042373 213 ---RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM-------G---F-------EPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 213 ---TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~-------g---f-------~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+-.++...+.. ...-..+++||+||.+.++.. + . ...+..+...+....-+++|+.
T Consensus 1486 ~~~~~E~~l~~~~~----lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1486 QPDTGEQALEICDA----LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp CCSSHHHHHHHHHH----HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCChHHHHHHHHHH----HHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 11233333332 111246889999999866641 1 1 1234445555555555666665
Q ss_pred C
Q 042373 273 T 273 (494)
Q Consensus 273 T 273 (494)
.
T Consensus 1562 q 1562 (2050)
T 3cmu_A 1562 Q 1562 (2050)
T ss_dssp C
T ss_pred c
Confidence 4
No 186
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.87 E-value=1.5 Score=41.92 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=26.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
.|+=.+++++-|||||.+.+--+.+.... +-+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~---------g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT---------TCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCeEEEEeecC
Confidence 46656777888999997655544444322 55677777653
No 187
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.77 E-value=0.49 Score=45.78 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=30.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+|+++--.+.+++.|... +.. -....++++||+|+|||... .-+...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la-~~l~~~l 62 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA-IALARDL 62 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH-HHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH-HHHHHHh
Confidence 3566666677777777654 211 01235999999999999643 2334443
No 188
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.50 E-value=8.5 Score=37.24 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=21.9
Q ss_pred EEEEEcccchhcc---cCChhHHHHHHHhhcCCCcEEEe
Q 042373 235 TYLVLDEADRMFD---MGFEPQITRIVQNIRPDRQAVLF 270 (494)
Q Consensus 235 ~~lVlDEaD~ml~---~gf~~~i~~Il~~l~~~~Q~ilf 270 (494)
-+|||||+|.+.. ..+...+..+.... +...+|+.
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~ 176 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMS 176 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEE
Confidence 4899999999875 34556666665543 23334443
No 189
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.29 E-value=0.92 Score=44.98 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=13.5
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
-++++||+|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999643
No 190
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.28 E-value=0.35 Score=46.91 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=22.5
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
+-.+|||||+|.|.... ...+..+++..+....+|+.+
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36899999999986432 233444445444444555444
No 191
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.26 E-value=1.2 Score=45.33 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=43.0
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh----HHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE----LVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre----La~Qi------------~TPgrl~dll 221 (494)
|+-+++.+++|+|||. +.+.++..+... +..++++..-.. .+... .+...+.+.+
T Consensus 74 G~li~I~G~pGsGKTt-lal~la~~~~~~--------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 74 GRITEIYGPESGGKTT-LALAIVAQAQKA--------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TSEEEEEESTTSSHHH-HHHHHHHHHHHT--------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CcEEEEEcCCCCChHH-HHHHHHHHHHHC--------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 5678889999999995 555555555432 334566543211 11111 1233333433
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.. ...-..+++||||....|.
T Consensus 145 ~~----l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 145 EL----LVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HH----HHTTTCCSEEEEECTTTCC
T ss_pred HH----HHhcCCCCEEEEeChHHhc
Confidence 32 1112357899999999887
No 192
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.22 E-value=0.98 Score=47.96 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=28.0
Q ss_pred CCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
+-.+|+++.-....+..++..- |..|..++... +--.+.+++++|+|+|||+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg---~~ip~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG---ARIPKGVLLVGPPGVGKTHL 80 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTS---CCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhcc---CCCCceEEEECCCCCCHHHH
Confidence 3457888766666655554320 11111000000 00124599999999999974
No 193
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.03 E-value=0.72 Score=46.46 Aligned_cols=17 Identities=47% Similarity=0.532 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
...+++++|+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 56899999999999964
No 194
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.85 E-value=1.6 Score=49.18 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=34.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhhhHHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TPgrl~dll~~~~~~~~~l~~l 234 (494)
++++++|++|+|||... --+...+....... .-.+...+.+ +.-.+.... ....++..++..-. ....-
T Consensus 192 ~~vlL~G~pG~GKT~la-~~la~~l~~~~~p~-~l~~~~~~~l-~~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~ 264 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV-EGLAQRIVKGDVPE-GLKGKRIVSL-QMGSLLAGAKYRGEFEERLKAVIQEVV----QSQGE 264 (854)
T ss_dssp CCCEEEECTTSCHHHHH-HHHHHHHHHTCSCT-TSTTCEEEEE-CC-----------CHHHHHHHHHHHHH----TTCSS
T ss_pred CceEEEcCCCCCHHHHH-HHHHHHHhcCCCch-hhcCCeEEEe-ehHHhhccCccchHHHHHHHHHHHHHH----hcCCC
Confidence 58999999999999633 23333443211000 0113333333 333332111 12223444433210 11123
Q ss_pred EEEEEcccchhcc
Q 042373 235 TYLVLDEADRMFD 247 (494)
Q Consensus 235 ~~lVlDEaD~ml~ 247 (494)
.+|++||+|.|..
T Consensus 265 ~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 265 VILFIDELHTVVG 277 (854)
T ss_dssp EEEEECCC-----
T ss_pred eEEEEecHHHHhc
Confidence 5799999999874
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.68 E-value=0.59 Score=43.53 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCCCchhhhH
Q 042373 157 SGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafl 176 (494)
.|.-+.+++|+|||||....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH
Confidence 56788999999999997544
No 196
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.56 E-value=1.6 Score=42.59 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|+-++++|+.|+|||.
T Consensus 30 ~~~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSS 46 (350)
T ss_dssp HCSEEEEECCTTSSHHH
T ss_pred cCCeEEEECCCcCCHHH
Confidence 36889999999999996
No 197
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.40 E-value=0.84 Score=50.63 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
+.++++++++|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 478999999999999643
No 198
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.25 E-value=2 Score=44.64 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHHHHc----CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 151 ASALIIS----GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 151 aip~il~----grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+..++. |.=+++.|++|+|||. |++-+...+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTt-l~l~ia~~~~ 228 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTA-FALNIAQNVA 228 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHH-HHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHH-HHHHHHHHHH
Confidence 3555553 3567788999999995 4454555443
No 199
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.16 E-value=0.91 Score=45.65 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=13.9
Q ss_pred CCCEEE--EcCCCCCchhh
Q 042373 158 GLDSVA--ITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~--~a~TGSGKTla 174 (494)
++.+++ +|+.|+|||..
T Consensus 50 ~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp CEEEEEECTTCCSSSHHHH
T ss_pred CCEEEEeCcCcCCCCHHHH
Confidence 346788 89999999964
No 200
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.51 E-value=1.3 Score=44.54 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc----hhHHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT----GELVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT----reLa~Qi------------~TPgrl~dll 221 (494)
|+-+++.+++|||||...+ -++..+... +..++++.-. ...+... .+...+++++
T Consensus 61 G~iv~I~G~pGsGKTtLal-~la~~~~~~--------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVAL-HAVANAQAA--------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TSEEEEEESTTSSHHHHHH-HHHHHHHHT--------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH-HHHHHHHhC--------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 5678899999999996443 344333322 3345665422 1112221 1223333333
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.. ...-..+++||+|+...++
T Consensus 132 ~~----l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 132 DM----LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HH----HHTTTCCSEEEEECGGGCC
T ss_pred HH----HHhcCCCCEEEEcChHhhc
Confidence 21 1111347899999999887
No 201
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.12 E-value=0.57 Score=46.15 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.+..+++++++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467999999999999963
No 202
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.77 E-value=1.5 Score=48.70 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=35.8
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
.++++||||+|||...- .+...+... ..+ +|-+..-++.... ...+.+...+... ...+|+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~--ala~~l~~~------~~~--~i~i~~s~~~~~~~~~~~~l~~~~~~~--------~~~vl~ 584 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR--ALAESIFGD------EES--MIRIDMSEYMEKHSTSGGQLTEKVRRK--------PYSVVL 584 (758)
T ss_dssp EEEEESCTTSSHHHHHH--HHHHHHHSC------TTC--EEEEEGGGGCSSCCCC---CHHHHHHC--------SSSEEE
T ss_pred EEEEECCCCCCHHHHHH--HHHHHhcCC------Ccc--eEEEechhcccccccccchhhHHHHhC--------CCeEEE
Confidence 49999999999997443 333332211 022 3333333333221 1123333444332 235899
Q ss_pred Ecccchhc
Q 042373 239 LDEADRMF 246 (494)
Q Consensus 239 lDEaD~ml 246 (494)
|||+|.+-
T Consensus 585 lDEi~~~~ 592 (758)
T 3pxi_A 585 LDAIEKAH 592 (758)
T ss_dssp EECGGGSC
T ss_pred EeCccccC
Confidence 99999874
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.51 E-value=1.9 Score=42.54 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=42.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch-h-HHHhhhhhhHHHHHHHhcCcceecccceEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG-E-LVRQQVRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr-e-La~Qi~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
..++.||.|+|||..... +...+..-. ...|-.+++-|.. + -+.++ ..+++.+... -...+.+++
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~-la~~~~~~~-----~~~~d~~~l~~~~~~~~id~i---r~li~~~~~~----p~~~~~kvv 86 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE-LPEYVEKFP-----PKASDVLEIDPEGENIGIDDI---RTIKDFLNYS----PELYTRKYV 86 (305)
T ss_dssp EEEEECSSSSHHHHHHHH-HHHHHHTSC-----CCTTTEEEECCSSSCBCHHHH---HHHHHHHTSC----CSSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHH-HHHhCchhh-----ccCCCEEEEcCCcCCCCHHHH---HHHHHHHhhc----cccCCceEE
Confidence 689999999999864433 222221110 1256677777642 1 11111 1233333321 124567999
Q ss_pred EEcccchhccc
Q 042373 238 VLDEADRMFDM 248 (494)
Q Consensus 238 VlDEaD~ml~~ 248 (494)
|+||||+|...
T Consensus 87 iIdead~lt~~ 97 (305)
T 2gno_A 87 IVHDCERMTQQ 97 (305)
T ss_dssp EETTGGGBCHH
T ss_pred EeccHHHhCHH
Confidence 99999998743
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.42 E-value=1.5 Score=42.27 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
..+++++|+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999643
No 205
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.29 E-value=0.8 Score=47.11 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=32.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
...+++++|+||||||... .+++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~--------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR--------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT--------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC--------CCcEEEEeCCCchhH
Confidence 4589999999999999864 4455555442 456777778877764
No 206
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.15 E-value=1.9 Score=52.99 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=59.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh--------------------hhhH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV--------------------RRGR 216 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~--------------------TPgr 216 (494)
.|+++++++++|||||.....-+.+.+.. |-.++++.= -++..++. .-.+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~---------Ge~~~Fit~-ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~ 1149 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDA-EHALDPIYARKLGVDIDNLLCSQPDTGEQALE 1149 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEECT-TSCCCHHHHHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEEc-cccHHHHHHHHcCCChhHheeecCcchHHHHH
Confidence 56899999999999997665555554422 445666642 22222210 1123
Q ss_pred HHHHHHhcCcceecccceEEEEEcccchhcc-------cC----------ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 217 MIDLLCKNGVKITNLTRVTYLVLDEADRMFD-------MG----------FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 217 l~dll~~~~~~~~~l~~l~~lVlDEaD~ml~-------~g----------f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+.+.+. .....++||+|+...+.. || +...+..+...+....-+++|+..
T Consensus 1150 i~~~l~-------~~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~ 1216 (2050)
T 3cmu_A 1150 ICDALA-------RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1216 (2050)
T ss_dssp HHHHHH-------HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHH-------HhCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 333333 245678999999887732 12 224466666666666677777654
No 207
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.04 E-value=1.5 Score=44.43 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=42.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch----hHHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG----ELVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr----eLa~Qi------------~TPgrl~dll 221 (494)
|+-+++.+|+|||||. +++.++..+... +..++++.... ..+.++ .+...++.++
T Consensus 61 G~i~~I~GppGsGKST-Lal~la~~~~~~--------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTT-LALHAIAEAQKM--------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TEEEEEEESTTSSHHH-HHHHHHHHHHHT--------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHH-HHHHHHHHHHhc--------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 4678889999999995 455555554332 34566665432 222222 1222222332
Q ss_pred HhcCcceecccceEEEEEcccchhcc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
.. ...-..++++|+|.+-.++.
T Consensus 132 ~~----l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 132 DE----LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HH----HHHTSCCSEEEEECTTTCCC
T ss_pred HH----HhhhcCCCeEEehHhhhhcC
Confidence 21 11124578999999877763
No 208
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=83.86 E-value=2.3 Score=39.22 Aligned_cols=112 Identities=10% Similarity=0.060 Sum_probs=71.1
Q ss_pred CChhHHHHHHHHHcCC--CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------hh
Q 042373 144 PVAIQAPASALIISGL--DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------VR 213 (494)
Q Consensus 144 ptpiQ~~aip~il~gr--dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------~T 213 (494)
.++-|..++..++..+ =.++.+.-|++||...+--++..-.++ |..+.||+|+..-.... .|
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--------Gr~V~vLAp~~~s~~~l~~~~~l~~~t 106 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--------GREVQIIAADRRSQMNMKQDERLSGEL 106 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--------TCCEEEECSTTHHHHHHSCTTTCSSCS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--------CeEEEEEcCchHHHHHHHhhcCcCcce
Confidence 3467889999887554 445568999999988765555444443 77899999998766655 22
Q ss_pred hhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh-hcCCCcEEEecC
Q 042373 214 RGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN-IRPDRQAVLFSP 272 (494)
Q Consensus 214 Pgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~-l~~~~Q~ilfSA 272 (494)
..+ ..+.... ..|..=+.+|||||-+|.- .++..++.. ...+.|+||+--
T Consensus 107 ~t~--~~ll~~~---~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~naqvvll~~ 157 (189)
T 2l8b_A 107 ITG--RRQLLEG---MAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNVQVLITDS 157 (189)
T ss_dssp SST--TTTTTTS---CCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTCCEEEEES
T ss_pred eeh--hhhhcCC---CCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCCEEEEeCC
Confidence 222 1122221 1234445899999998763 344444443 345678777643
No 209
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=82.59 E-value=5.8 Score=38.79 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCCCchhhhH
Q 042373 157 SGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafl 176 (494)
.|+-+++++++|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46778889999999997443
No 210
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=82.56 E-value=4.4 Score=40.38 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=41.6
Q ss_pred ceEEEEEcccchhc-ccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---cCCccceeecc
Q 042373 233 RVTYLVLDEADRMF-DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---TNVCNLSIANS 295 (494)
Q Consensus 233 ~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTd 295 (494)
..+++++|.+.++- +......+..+...+.++..++++.++....+...++. .-.+.++|.|-
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEEC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 45678899987653 23345566667777778888888988877776666554 23455566554
No 211
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.30 E-value=4.4 Score=36.65 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCCchhhhH
Q 042373 158 GLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafl 176 (494)
|.=+++.+++|+|||....
T Consensus 20 G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TSEEEEECSTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4667889999999996443
No 212
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.99 E-value=2.3 Score=43.81 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
|.-+++++++|||||...
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 356788999999999643
No 213
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=81.86 E-value=1.6 Score=46.40 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=28.8
Q ss_pred cceEEEEEcccchhcc-cCChhHHHHHHHhhc------CCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFD-MGFEPQITRIVQNIR------PDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~------~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
+.++++++|=+-++-. ......+..+...++ +..-++.+++|........++.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~ 433 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHH
Confidence 4567899998876532 112223333333222 2233667888877665555543
No 214
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.65 E-value=3.8 Score=37.76 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
|.-+++.|++|+|||..
T Consensus 30 G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CeEEEEEeCCCCCHHHH
Confidence 56788999999999953
No 215
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=80.44 E-value=3.2 Score=41.91 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=42.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc----hhHHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT----GELVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT----reLa~Qi------------~TPgrl~dll 221 (494)
|+-+++.+++|+|||... +-++..+... +..++++.-. ...+... .+...+.+++
T Consensus 63 G~ii~I~G~pGsGKTtLa-l~la~~~~~~--------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLT-LQVIAAAQRE--------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHT--------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHHC--------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 577899999999999644 4444444332 3356666541 2222221 1223333333
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.. ...-..+++||||....|.
T Consensus 134 ~~----l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 134 DA----LARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HH----HHHHTCCSEEEEECGGGCC
T ss_pred HH----HHhccCCCEEEEcCHHHhc
Confidence 21 1112357899999999887
No 216
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=80.42 E-value=0.18 Score=56.70 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=33.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhC-CC--CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 116 APKPIKTWRQTGLTTKILETFSKL-NH--ENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~~-g~--~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
...|-.+|++++-...+.+.|... .+ ..+...... .+..++.+++++|+|+|||..
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCC---CCCCCCCCCCBCCTTSSHHHH
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhc---CCCCCceeEEECCCCCCHHHH
Confidence 344556788877666677776653 11 111100000 112467899999999999973
No 217
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.61 E-value=5.2 Score=38.26 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=18.0
Q ss_pred HHcCCCEEEEcCCCCCchhhhHH
Q 042373 155 IISGLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafll 177 (494)
+..|.-+++.+++|||||.....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 44678889999999999964433
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=79.24 E-value=3.2 Score=46.78 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=13.8
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
.++++||||+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999743
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.95 E-value=2.9 Score=38.55 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCCCchhhhH
Q 042373 157 SGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafl 176 (494)
.|.-+++.+++|+|||....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 35678899999999997443
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.17 E-value=1.1 Score=43.24 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCCCchhhh
Q 042373 156 ISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlaf 175 (494)
..|.-+++++|||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 45777899999999999643
No 221
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=75.98 E-value=4.9 Score=39.72 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
..+++++|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999974
No 222
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.25 E-value=4.6 Score=40.51 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=18.4
Q ss_pred HHHHHHc-----CCCEEEEcCCCCCchhhhH
Q 042373 151 ASALIIS-----GLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 151 aip~il~-----grdvi~~a~TGSGKTlafl 176 (494)
.+-.++. |+=+.+++++|||||....
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3445553 4567888999999997443
No 223
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.97 E-value=4.8 Score=48.81 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch---hH-HHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG---EL-VRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr---eL-a~Qi------------~TPgrl~dll 221 (494)
|+.+++++++|||||...+--+...+.. +-.++++.-.. ++ +.++ .+...+.+++
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~---------G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll 104 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 104 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhC---------CCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHH
Confidence 6899999999999997544444444432 33566665321 11 1111 1223333333
Q ss_pred HhcCcceecccceEEEEEcccchhcc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
.. +....+.++||||+...++.
T Consensus 105 ~~----L~~~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 105 DA----LARSGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HH----HHHHTCCSEEEESCSTTCCC
T ss_pred HH----HHhccCCCEEEEcchhhhcc
Confidence 22 11124678999999988764
No 224
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=72.04 E-value=2.2 Score=42.77 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCCchhhhH
Q 042373 157 SGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafl 176 (494)
.|+-+++.+|+|+|||...+
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35667999999999996433
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=71.14 E-value=4.3 Score=44.86 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=14.0
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
.+++++|||+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999744
No 226
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.95 E-value=4 Score=48.35 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=18.7
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.-+-++++||||||. ++-+|.+++
T Consensus 1104 ~Ge~vaIVG~SGsGKST--L~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKST--VVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTS--HHHHHTTSS
T ss_pred CCCEEEEECCCCChHHH--HHHHHhcCc
Confidence 46778899999999997 333444443
No 227
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=70.68 E-value=3.5 Score=41.66 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=28.6
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
.+.+++++++||||||...-. ++..+... +..++|+=|.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~--------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ--------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT--------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC--------CCEEEEEeCCcCH
Confidence 567999999999999965433 33333321 5667888777654
No 228
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.26 E-value=3.2 Score=44.04 Aligned_cols=39 Identities=18% Similarity=0.041 Sum_probs=25.8
Q ss_pred HHHHHhCCCCCCChhHHHHHH-HHHcCCCEEEEcCCCCCchh
Q 042373 133 LETFSKLNHENPVAIQAPASA-LIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip-~il~grdvi~~a~TGSGKTl 173 (494)
+..|.++|. +++.+..-+. .+-.|..+++++|||||||.
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 345556663 2343433333 35578899999999999996
No 229
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=69.47 E-value=3.1 Score=42.01 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|.-+++++|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455788999999999963
No 230
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=69.32 E-value=1.7 Score=46.39 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=13.5
Q ss_pred ccee--eccccccCCCCCC----ceEEEecCCCC
Q 042373 289 NLSI--ANSVRARGLDEKE----LELVINFDAPN 316 (494)
Q Consensus 289 ~ILV--aTdv~~rGlDi~~----v~~VInyd~P~ 316 (494)
.||+ ||+.+++|||+++ +++||++++|.
T Consensus 430 ~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 430 YLVMLVMRAKESEGVEFREKENLFESLVLAGLPY 463 (540)
T ss_dssp CEEEEEC---------------CEEEEEEESCCC
T ss_pred eEEEEEecCceecceecCCCcccccEEEEECCCC
Confidence 5776 8999999999997 89999999994
No 231
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=69.02 E-value=5.4 Score=39.28 Aligned_cols=18 Identities=33% Similarity=0.202 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
|.-+++.+++|+|||...
T Consensus 107 G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHhHHH
Confidence 467889999999999643
No 232
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.02 E-value=5.7 Score=40.99 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
|.-+++++|||||||..
T Consensus 167 ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 44578999999999963
No 233
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=68.36 E-value=8.8 Score=45.46 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=26.9
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
+++-+++||||+=.-+|...+..+...+..+..++-+|+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 456778999999888887767777776666544443333
No 234
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=67.99 E-value=6.8 Score=38.00 Aligned_cols=44 Identities=11% Similarity=-0.067 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCCCCChhHHH-HHHHHHcCC-----CEEEEcCCCCCchhhhH
Q 042373 130 TKILETFSKLNHENPVAIQAP-ASALIISGL-----DSVAITETGSGKTLAFL 176 (494)
Q Consensus 130 ~~ll~~l~~~g~~~ptpiQ~~-aip~il~gr-----dvi~~a~TGSGKTlafl 176 (494)
..|.+-|+..||. |++.. ++-.++.|+ .+++++|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4788888888875 66643 355666664 48999999999997554
No 235
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.24 E-value=4.8 Score=42.58 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchh
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTl 173 (494)
..+=..++-.+..|.+++++||+|+|||.
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHH
Confidence 34445566677889999999999999996
No 236
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=64.38 E-value=5.2 Score=39.17 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
|.-+++.+++|+|||...
T Consensus 98 g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999643
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=63.77 E-value=2.8 Score=41.07 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=18.1
Q ss_pred HHHHcCCCEEEEcCCCCCchhh
Q 042373 153 ALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTla 174 (494)
-.+..|+++++++|+|+|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3455689999999999999963
No 238
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=62.91 E-value=7.1 Score=35.82 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|.-+++.+++|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4577899999999999643
No 239
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=62.68 E-value=3.6 Score=41.48 Aligned_cols=20 Identities=40% Similarity=0.297 Sum_probs=17.7
Q ss_pred HHHcCCCEEEEcCCCCCchh
Q 042373 154 LIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTl 173 (494)
.+..|..++++++||||||.
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 45578999999999999997
No 240
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=62.53 E-value=5.1 Score=39.93 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=17.2
Q ss_pred HHHHHc-----CCCEEEEcCCCCCchhh
Q 042373 152 SALIIS-----GLDSVAITETGSGKTLA 174 (494)
Q Consensus 152 ip~il~-----grdvi~~a~TGSGKTla 174 (494)
+-.++. |.-+++.+++|||||..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtl 138 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQL 138 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 555553 45678899999999963
No 241
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=62.05 E-value=7.1 Score=38.33 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=24.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|.=+++.|++|+|||. |++-+..++..+ +..+++++
T Consensus 68 G~l~li~G~pG~GKTt-l~l~ia~~~a~~--------g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTA-FALKQAKNMSDN--------DDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHH-HHHHHHHHHHTT--------TCEEEEEE
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHHc--------CCeEEEEE
Confidence 5668888999999994 555555554432 34577775
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=61.53 E-value=2.9 Score=37.30 Aligned_cols=19 Identities=16% Similarity=0.122 Sum_probs=15.8
Q ss_pred HcCCCEEEEcCCCCCchhh
Q 042373 156 ISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTla 174 (494)
+.|+=+++++|+|||||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577789999999999973
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=60.47 E-value=4.4 Score=36.98 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=17.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
|-++++||+|+|||. ++..++.
T Consensus 2 RpIVi~GPSG~GK~T-----l~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKST-----LLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHH-----HHHHHHH
T ss_pred CEEEEECCCCCCHHH-----HHHHHHH
Confidence 568999999999996 4555544
No 244
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=60.44 E-value=5.4 Score=40.41 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=19.0
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|+ ++.++||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 45667889874 56699999999754
No 245
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=59.92 E-value=9.1 Score=35.32 Aligned_cols=31 Identities=23% Similarity=0.075 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
+.-|..++..+-.|.-+.+++|+|||||..+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4446667777888888999999999999743
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=59.64 E-value=33 Score=35.41 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=28.4
Q ss_pred cceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 232 TRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
...+++|+|=+-++-. ......+..+...+.++.-++.+.++-.......+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a 230 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHH
Confidence 4678999998765432 11223344455555566556666666544444444
No 247
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.54 E-value=2.3 Score=37.60 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=16.9
Q ss_pred HcCCCEEEEcCCCCCchhhh
Q 042373 156 ISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlaf 175 (494)
+.++.+++++++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 46788999999999999743
No 248
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.91 E-value=12 Score=45.46 Aligned_cols=108 Identities=12% Similarity=0.176 Sum_probs=58.5
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH----HHhh---------hhh---hHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL----VRQQ---------VRR---GRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL----a~Qi---------~TP---grl~dll 221 (494)
|+-+.+.+|.|||||... ++++...... |..++++.+-.+| +..+ ..| ..-+..+
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~~--------g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQRE--------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHT--------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHhc--------CCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 367999999999999754 4455443332 5567777664433 3332 122 2112222
Q ss_pred HhcCcceecccceEEEEEcccchhcccCC-----------------hhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFDMGF-----------------EPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~~gf-----------------~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
.. ++.-..+++||+|....|....- ...++++...+....-+++|...+...+
T Consensus 1502 ~~----~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1502 DA----LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 1571 (1706)
T ss_dssp HH----HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC---
T ss_pred HH----HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeecccccc
Confidence 11 11223578999999988775321 1224444445555555666766665444
No 249
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=58.76 E-value=7.4 Score=38.39 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 46778899999999997
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.41 E-value=31 Score=33.44 Aligned_cols=19 Identities=26% Similarity=0.097 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|+-+.+++++|+|||...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667778899999999643
No 251
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=57.65 E-value=5.1 Score=39.85 Aligned_cols=19 Identities=42% Similarity=0.520 Sum_probs=17.0
Q ss_pred HHcCCCEEEEcCCCCCchh
Q 042373 155 IISGLDSVAITETGSGKTL 173 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTl 173 (494)
+..|..++++++||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4578999999999999997
No 252
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.44 E-value=6.8 Score=40.27 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.9
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|+ ++.++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 46677899875 56699999999865
No 253
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=57.13 E-value=6.7 Score=39.10 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEcCCCCCchhhh
Q 042373 151 ASALIISGLD--SVAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grd--vi~~a~TGSGKTlaf 175 (494)
.+..++.|.| ++..++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455678887 466799999999764
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=57.05 E-value=4.4 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999743
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=56.87 E-value=3.8 Score=35.87 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.++-++++|+.|||||..
T Consensus 2 ~~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 356689999999999973
No 256
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=56.69 E-value=8.5 Score=48.83 Aligned_cols=49 Identities=8% Similarity=0.021 Sum_probs=34.7
Q ss_pred CCHHHHHHHHhCCCCCCChhHHH----HHHHHHcCCCEEEEcCCCCCchhhhHH
Q 042373 128 LTTKILETFSKLNHENPVAIQAP----ASALIISGLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~----aip~il~grdvi~~a~TGSGKTlafll 177 (494)
+...+.+.+.+.|+. +++.+.. ....+...+.++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 455677777788874 6666532 233445678899999999999997753
No 257
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=56.59 E-value=4.1 Score=38.40 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
.+.++++||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999643
No 258
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=56.30 E-value=6.3 Score=39.91 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=15.5
Q ss_pred cCCC--EEEEcCCCCCchhhh
Q 042373 157 SGLD--SVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grd--vi~~a~TGSGKTlaf 175 (494)
.|.+ ++..++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4877 588899999999754
No 259
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=56.05 E-value=4.5 Score=36.55 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.++.+++++++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5778999999999999743
No 260
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=55.77 E-value=6.7 Score=39.48 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=18.4
Q ss_pred HHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 152 SALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 152 ip~il~grdv--i~~a~TGSGKTlaf 175 (494)
+..++.|.|+ ++.++||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4556788875 66699999999864
No 261
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=55.56 E-value=13 Score=39.79 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 368 ~G~~~~ivG~sGsGKST 384 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKST 384 (582)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999997
No 262
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=55.53 E-value=9.7 Score=39.49 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=27.5
Q ss_pred HHHHHHcC----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 151 ASALIISG----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 151 aip~il~g----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
.+..++.| .=+++.|++|+|||. |++-+..++..+ +..++|++
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTt-lal~ia~~~a~~--------g~~vl~fS 232 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTA-FALKQAKNMSDN--------DDVVNLHS 232 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHH-HHHHHHHHHHHT--------TCEEEEEC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHH-HHHHHHHHHHHc--------CCEEEEEE
Confidence 34555543 457788999999995 555555555432 34577775
No 263
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=55.46 E-value=7.4 Score=39.49 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.3
Q ss_pred HHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 152 SALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 152 ip~il~grdv--i~~a~TGSGKTlaf 175 (494)
+..++.|.|. +..++||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 4456788764 56699999999764
No 264
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=55.41 E-value=7.4 Score=39.09 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=18.4
Q ss_pred HHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 152 SALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 152 ip~il~grdv--i~~a~TGSGKTlaf 175 (494)
+..++.|.|. +..++||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 4566789875 56699999999753
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=55.31 E-value=4.2 Score=36.41 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHcCCCEEEEcCCCCCchhh
Q 042373 155 IISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTla 174 (494)
+..|.-++++|++|||||..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHH
T ss_pred CCCCCEEEEECCCCCCHHHH
Confidence 34577789999999999973
No 266
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=55.19 E-value=4.7 Score=35.58 Aligned_cols=18 Identities=28% Similarity=0.089 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
++.+++++++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999743
No 267
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=54.80 E-value=7.8 Score=39.21 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=18.9
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|+ +..++||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 45566789875 55699999999763
No 268
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=54.53 E-value=7.7 Score=39.45 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=18.2
Q ss_pred HHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 152 SALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 152 ip~il~grdv--i~~a~TGSGKTlaf 175 (494)
+..++.|.|+ ++.++||||||...
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4456788765 56699999999753
No 269
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=54.31 E-value=24 Score=35.31 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=41.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH----HHhh------------hhhhHH-HHHHH
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL----VRQQ------------VRRGRM-IDLLC 222 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL----a~Qi------------~TPgrl-~dll~ 222 (494)
-+++.+++|+|||...+ .++.....+. .+..++++..-..+ |.++ .+...+ ++++.
T Consensus 30 iteI~G~pGsGKTtL~L-q~~~~~~~~g------~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGL-TMVSSYMRQY------PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHH-HHHHHHHHHC------TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHhcC------CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37888999999996444 4444443210 04467776543322 2222 122233 23222
Q ss_pred hcCcceecccceEEEEEcccchhc
Q 042373 223 KNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 223 ~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.- ..+.-..+++||+|=+..|+
T Consensus 103 ~l--~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 103 QL--DAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HH--HTCCTTCCEEEEEECSTTCB
T ss_pred HH--HHhhccCceEEEEecccccc
Confidence 10 00122357899999988886
No 270
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=54.27 E-value=7.6 Score=40.04 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=18.2
Q ss_pred HHHHHcCCC--EEEEcCCCCCchhhh
Q 042373 152 SALIISGLD--SVAITETGSGKTLAF 175 (494)
Q Consensus 152 ip~il~grd--vi~~a~TGSGKTlaf 175 (494)
+..++.|.| +++.++||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 455678876 466699999999754
No 271
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=54.23 E-value=8 Score=39.04 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=19.3
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|. +..++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45567789875 56699999999764
No 272
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=54.09 E-value=8 Score=38.98 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=18.3
Q ss_pred HHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 152 SALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 152 ip~il~grdv--i~~a~TGSGKTlaf 175 (494)
+..++.|.|. +..++||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4456788765 56699999999764
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=53.95 E-value=5 Score=35.31 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|+-++++++.|||||..
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466789999999999973
No 274
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=53.88 E-value=8.3 Score=38.52 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 150 PASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 150 ~aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
..+..++.|.|. +..++||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 456778899874 56799999999754
No 275
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=53.86 E-value=24 Score=37.60 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 368 ~G~~~~ivG~sGsGKST 384 (582)
T 3b60_A 368 AGKTVALVGRSGSGKST 384 (582)
T ss_dssp TTCEEEEEECTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778899999999997
No 276
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=53.60 E-value=8.4 Score=38.82 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=18.9
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|. +..++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34567788764 56699999999765
No 277
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=53.60 E-value=66 Score=33.86 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=30.8
Q ss_pred cceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 232 TRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
...+++|+|=+-++... .+...+..+...+.++.-++++.|+........+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a 233 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA 233 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH
Confidence 56789999998765321 2334444555545566667778887664444443
No 278
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=53.52 E-value=7.6 Score=39.27 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=18.5
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|+ ++.++||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34556788765 56699999999653
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=53.42 E-value=5.3 Score=36.48 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|+=++++||+|||||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466688899999999973
No 280
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=53.28 E-value=8.5 Score=39.02 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=18.6
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|. +..++||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34566789865 56699999999654
No 281
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.95 E-value=8.5 Score=39.68 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 150 PASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 150 ~aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
..+..++.|.|+ ++.++||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 357778899875 56699999999764
No 282
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=52.55 E-value=7.9 Score=39.08 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=17.9
Q ss_pred HHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 152 SALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 152 ip~il~grdv--i~~a~TGSGKTlaf 175 (494)
+..++.|.|. +..++||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 3456788764 56699999999754
No 283
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=52.45 E-value=8.1 Score=39.31 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=17.5
Q ss_pred HHHHHcCCCE--EEEcCCCCCchhh
Q 042373 152 SALIISGLDS--VAITETGSGKTLA 174 (494)
Q Consensus 152 ip~il~grdv--i~~a~TGSGKTla 174 (494)
+..++.|.|+ ++.++||||||..
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCccee
Confidence 4456788765 5669999999965
No 284
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=52.40 E-value=7.9 Score=39.06 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|. ++.++||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 34566788865 66699999999764
No 285
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=51.98 E-value=17 Score=38.95 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 380 ~G~~~~ivG~sGsGKST 396 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTT 396 (598)
T ss_dssp TTCEEEEECCTTSSTTH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46778899999999997
No 286
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=51.94 E-value=7.4 Score=39.56 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=19.8
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|+ +..++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 56678899875 55699999999764
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=51.71 E-value=5.5 Score=34.13 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=12.6
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-++++|++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999973
No 288
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=51.53 E-value=6.7 Score=39.49 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=19.8
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|+ ++.++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 56677889875 56699999999765
No 289
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=51.51 E-value=5.1 Score=39.96 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=13.4
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
++=++++||||||||..
T Consensus 3 ~~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKT 19 (322)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEECCCcCCHHHH
Confidence 34467889999999964
No 290
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=51.10 E-value=5.4 Score=36.81 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCCCchhh
Q 042373 156 ISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTla 174 (494)
+.|+=++++||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 4688899999999999973
No 291
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=51.01 E-value=13 Score=39.81 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 368 ~Ge~~~ivG~sGsGKST 384 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKST 384 (587)
T ss_dssp TTCEEEEECSSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778899999999997
No 292
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=50.99 E-value=5.9 Score=39.82 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.5
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+-++++||||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999963
No 293
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=50.95 E-value=5.9 Score=39.44 Aligned_cols=14 Identities=36% Similarity=0.313 Sum_probs=12.1
Q ss_pred EEEEcCCCCCchhh
Q 042373 161 SVAITETGSGKTLA 174 (494)
Q Consensus 161 vi~~a~TGSGKTla 174 (494)
+++++|||||||..
T Consensus 13 i~i~GptgsGKt~l 26 (316)
T 3foz_A 13 IFLMGPTASGKTAL 26 (316)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67889999999964
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=50.72 E-value=6.2 Score=35.26 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|.=+.++||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788899999999973
No 295
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=50.53 E-value=5.2 Score=35.39 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+++++++|||||.
T Consensus 8 ~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKST 24 (191)
T ss_dssp TTEEEEEEECTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 46778899999999997
No 296
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=50.48 E-value=12 Score=43.51 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=26.8
Q ss_pred EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh
Q 042373 162 VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206 (494)
Q Consensus 162 i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre 206 (494)
++.|..|||||.+.+--+...+.... .+...|+|||..-
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~------~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP------FGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT------TSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC------CCCcEEEEecCcc
Confidence 68899999999876655555554422 1457888887653
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=50.28 E-value=7 Score=33.93 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCCchh
Q 042373 158 GLDSVAITETGSGKTL 173 (494)
Q Consensus 158 grdvi~~a~TGSGKTl 173 (494)
++-++++++.|||||.
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5678999999999997
No 298
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=50.07 E-value=7.1 Score=36.00 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.6
Q ss_pred HHcCCCEEEEcCCCCCchh
Q 042373 155 IISGLDSVAITETGSGKTL 173 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTl 173 (494)
+-.|+=+.+++|+|||||.
T Consensus 20 i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp --CCCCEEEECSTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4468889999999999997
No 299
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=50.00 E-value=9.2 Score=39.13 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEcCCCCCchhhh
Q 042373 151 ASALIISGLD--SVAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grd--vi~~a~TGSGKTlaf 175 (494)
.+..++.|.| +++.++||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3456778876 466699999999764
No 300
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=49.82 E-value=7.1 Score=34.78 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.0
Q ss_pred CCEEEEcCCCCCchh
Q 042373 159 LDSVAITETGSGKTL 173 (494)
Q Consensus 159 rdvi~~a~TGSGKTl 173 (494)
+=+.+++|+|||||.
T Consensus 2 ~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEESSSSSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 457889999999997
No 301
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=49.51 E-value=7.2 Score=39.23 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.2
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|+ +..++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 45566788875 56699999999765
No 302
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=49.47 E-value=6.2 Score=37.44 Aligned_cols=14 Identities=36% Similarity=0.211 Sum_probs=12.2
Q ss_pred EEEEcCCCCCchhh
Q 042373 161 SVAITETGSGKTLA 174 (494)
Q Consensus 161 vi~~a~TGSGKTla 174 (494)
++++++||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 67899999999963
No 303
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=49.15 E-value=7.5 Score=35.15 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=15.8
Q ss_pred HcCCCEEEEcCCCCCchh
Q 042373 156 ISGLDSVAITETGSGKTL 173 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTl 173 (494)
..|+-+++++++|||||.
T Consensus 10 ~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCEEEECCTTSCHHH
T ss_pred ccCCEEEEECCCCCCHHH
Confidence 467889999999999997
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=49.12 E-value=6.7 Score=34.89 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.++.++++++.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999973
No 305
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=48.14 E-value=11 Score=39.18 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=18.2
Q ss_pred HHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 152 SALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 152 ip~il~grdv--i~~a~TGSGKTlaf 175 (494)
+..++.|.|. +..++||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4456788864 66699999999765
No 306
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=47.91 E-value=8.9 Score=39.25 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=17.7
Q ss_pred HHHHcCCCE--EEEcCCCCCchhhh
Q 042373 153 ALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 153 p~il~grdv--i~~a~TGSGKTlaf 175 (494)
..++.|.|. +..++||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 456788764 56699999999764
No 307
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.74 E-value=7.5 Score=35.30 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=16.0
Q ss_pred HHHcCCCEEEEcCCCCCchhh
Q 042373 154 LIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTla 174 (494)
.+-.|+=+.+++|+|||||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 566788889999999999973
No 308
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=47.74 E-value=5.7 Score=38.78 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
....++++|++|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 346799999999999963
No 309
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.34 E-value=11 Score=48.34 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=33.8
Q ss_pred CCHHHHHHHHhCCCCCCChhHHH-HHH---HHHcCCCEEEEcCCCCCchhhhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAP-ASA---LIISGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~-aip---~il~grdvi~~a~TGSGKTlafl 176 (494)
|...|.+.+.++|+ .|++.+.. ++. .+...+-++++||||||||.+|-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 44566777778888 46665533 332 23456789999999999999775
No 310
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=47.13 E-value=16 Score=35.70 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=11.6
Q ss_pred EEEEcCCCCCchh
Q 042373 161 SVAITETGSGKTL 173 (494)
Q Consensus 161 vi~~a~TGSGKTl 173 (494)
+++.++.|||||.
T Consensus 7 ~~i~G~~GaGKTT 19 (318)
T 1nij_A 7 TLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEESSSSSCHH
T ss_pred EEEEecCCCCHHH
Confidence 5788999999997
No 311
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=46.71 E-value=18 Score=38.28 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCCCchhhhH
Q 042373 157 SGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafl 176 (494)
.+-++++.+.||||||.+.-
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHH
Confidence 35789999999999996543
No 312
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=46.39 E-value=7.9 Score=39.11 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=16.3
Q ss_pred HcCCCEEEEcCCCCCchhhh
Q 042373 156 ISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlaf 175 (494)
..|.-+++++|||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999643
No 313
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=46.33 E-value=44 Score=35.03 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|.-+++.+++|+|||...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl 298 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLV 298 (525)
T ss_dssp SSCEEEEEECTTSSHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH
Confidence 4567788899999999643
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=46.30 E-value=8 Score=34.82 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|+-++++++.|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467889999999999973
No 315
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=46.01 E-value=7.7 Score=36.14 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.3
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|+-++++++||+|||.
T Consensus 33 ~g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSE 49 (205)
T ss_dssp TTEEEEEECCCTTTTHH
T ss_pred CCEEEEEECCCCCCHHH
Confidence 35678999999999985
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=45.99 E-value=6.8 Score=34.55 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCCchhhhH
Q 042373 157 SGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafl 176 (494)
.|.=+.+++++|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34557889999999997543
No 317
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=45.90 E-value=18 Score=35.42 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=18.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
|.-+.+++|+|||||.. +-++..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 55677889999999973 334444443
No 318
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=45.69 E-value=9.9 Score=36.25 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=17.9
Q ss_pred HHHcCCCEEEEcCCCCCchhh
Q 042373 154 LIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTla 174 (494)
..+.|+.++++++.|||||..
T Consensus 44 ~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HHHTTCCEEEECSTTSCHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHH
Confidence 445699999999999999974
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=45.48 E-value=6.7 Score=34.26 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|.-++++++.|||||..
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356688999999999974
No 320
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=45.26 E-value=8.1 Score=33.25 Aligned_cols=15 Identities=7% Similarity=-0.259 Sum_probs=12.7
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-++++|+.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 321
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=45.25 E-value=10 Score=38.67 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=18.7
Q ss_pred HHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 151 ASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 151 aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
.+..++.|.|+ ++.++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 45566788764 56699999999753
No 322
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=44.75 E-value=8.4 Score=33.42 Aligned_cols=15 Identities=33% Similarity=0.268 Sum_probs=12.7
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-++++|+.|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 378899999999973
No 323
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.14 E-value=9 Score=35.64 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHcCCCEEEEcCCCCCchhh
Q 042373 155 IISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTla 174 (494)
+-.|+=+++++|+|||||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45678889999999999973
No 324
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=43.73 E-value=6.6 Score=34.54 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|.-++++++.|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999974
No 325
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=43.65 E-value=8.8 Score=33.68 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=12.5
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
=.++++++|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 457889999999973
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=43.37 E-value=7.9 Score=34.02 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.+.-+++++++|||||...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp -CEEEEEECCTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3456889999999999743
No 327
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=43.29 E-value=23 Score=40.33 Aligned_cols=35 Identities=6% Similarity=-0.046 Sum_probs=23.0
Q ss_pred EEEecCCCCCHhHHHhhhccCCC---cceEEEEecccC
Q 042373 308 LVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEEN 342 (494)
Q Consensus 308 ~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~ 342 (494)
|||--..+.|..-=-|=.||+|| .|.+..|++-+|
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 67777777776655564555554 677877776554
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=42.47 E-value=23 Score=31.65 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=15.4
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHH
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~ 184 (494)
+.++++.|||||. ++.-++..+.
T Consensus 7 i~i~G~sGsGKTT-l~~~L~~~l~ 29 (169)
T 1xjc_A 7 WQVVGYKHSGKTT-LMEKWVAAAV 29 (169)
T ss_dssp EEEECCTTSSHHH-HHHHHHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHHHhhH
Confidence 5678999999996 3333444443
No 329
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=42.24 E-value=9.7 Score=32.99 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.2
Q ss_pred EEEEcCCCCCchhh
Q 042373 161 SVAITETGSGKTLA 174 (494)
Q Consensus 161 vi~~a~TGSGKTla 174 (494)
.++++|+|||||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999974
No 330
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=42.03 E-value=9.7 Score=37.93 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=13.0
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-+++++|||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999963
No 331
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=41.75 E-value=9.3 Score=38.41 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.4
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
-.++++|||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999755
No 332
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=41.72 E-value=9 Score=35.30 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=11.2
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|+=+.+++|+|||||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788899999999974
No 333
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=41.40 E-value=15 Score=33.25 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.2
Q ss_pred CCCEEEEcCCCCCchh
Q 042373 158 GLDSVAITETGSGKTL 173 (494)
Q Consensus 158 grdvi~~a~TGSGKTl 173 (494)
|.-+.+++++|||||.
T Consensus 22 g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 22 RQLVALSGAPGSGKST 37 (208)
T ss_dssp CEEEEEECCTTSCTHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4556778999999996
No 334
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=41.09 E-value=10 Score=33.52 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=13.1
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+-+++++++|||||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3467899999999973
No 335
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.86 E-value=26 Score=33.37 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|.=+++.|++|+|||...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 4677888999999999643
No 336
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=40.71 E-value=16 Score=40.24 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCE--EEEcCCCCCchhhh
Q 042373 150 PASALIISGLDS--VAITETGSGKTLAF 175 (494)
Q Consensus 150 ~aip~il~grdv--i~~a~TGSGKTlaf 175 (494)
..+..++.|.|+ +..++||||||...
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 357788999875 55599999999764
No 337
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=40.24 E-value=17 Score=39.10 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.8
Q ss_pred HHHHcCCCEEEEcCCCCCchhh
Q 042373 153 ALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTla 174 (494)
..+..|+.+++++|+|+|||..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHH
Confidence 3566789999999999999973
No 338
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=40.09 E-value=95 Score=31.84 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=14.1
Q ss_pred CCEEEEcCCCCCchhhhH
Q 042373 159 LDSVAITETGSGKTLAFL 176 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafl 176 (494)
+-+++++++|+|||....
T Consensus 101 ~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467778999999996543
No 339
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=39.99 E-value=14 Score=38.28 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
..+++++||+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 368999999999999743
No 340
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=39.89 E-value=17 Score=37.94 Aligned_cols=37 Identities=8% Similarity=-0.100 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|.=+++.|++|+|||. |++-++.++..+. +..+++++
T Consensus 242 G~l~li~G~pG~GKT~-lal~~a~~~a~~~-------g~~vl~~s 278 (503)
T 1q57_A 242 GEVIMVTSGSGMVMST-FVRQQALQWGTAM-------GKKVGLAM 278 (503)
T ss_dssp TCEEEEEESSCHHHHH-HHHHHHHHHTTTS-------CCCEEEEE
T ss_pred CeEEEEeecCCCCchH-HHHHHHHHHHHhc-------CCcEEEEe
Confidence 4567888999999995 5555555554321 33566665
No 341
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=39.88 E-value=11 Score=38.86 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=12.4
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
+++.||||||||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 678899999999643
No 342
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=39.44 E-value=11 Score=37.71 Aligned_cols=15 Identities=40% Similarity=0.264 Sum_probs=12.7
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-++++||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 477889999999963
No 343
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=38.76 E-value=12 Score=33.55 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.0
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
.+.+++|+|||||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999743
No 344
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=38.49 E-value=18 Score=35.53 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=19.1
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.-+.+++|+|||||. ++-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 56788899999999996 334454554
No 345
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=38.29 E-value=12 Score=33.53 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
+-++++|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999743
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=38.27 E-value=12 Score=32.89 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.+.-++++++.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999973
No 347
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=38.11 E-value=20 Score=35.09 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=17.9
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.-+.+++++|||||... -++..++
T Consensus 99 ~g~vi~lvG~nGsGKTTll--~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL--GKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH--HHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH--HHHHHHH
Confidence 4556778899999999743 3344443
No 348
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=37.97 E-value=12 Score=33.82 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=22.0
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
.++.+... ..+..|.-++++++.|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 34555444 44556778899999999999643
No 349
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=37.77 E-value=12 Score=37.60 Aligned_cols=15 Identities=47% Similarity=0.656 Sum_probs=0.0
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
.+++|+||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 350
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=37.68 E-value=30 Score=37.23 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=18.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.-++++.+.||||||.+.- .++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~-tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVN-AMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHH-HHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999996544 4444443
No 351
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=37.61 E-value=18 Score=32.35 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=32.6
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+.-.++++||.+.-+|......+..++..+....|+|+.|-
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 34568999999999988777788888887777778877764
No 352
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=37.42 E-value=11 Score=33.77 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|.-++++++.|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667888999999999643
No 353
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=37.25 E-value=11 Score=33.06 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
++-++++++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999974
No 354
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=37.13 E-value=14 Score=32.65 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.++-++++++.|||||..
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788999999999973
No 355
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=37.13 E-value=12 Score=40.34 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=13.5
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
+++++||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999996
No 356
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=36.88 E-value=13 Score=33.43 Aligned_cols=17 Identities=29% Similarity=0.079 Sum_probs=13.3
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
|.-+.+.+++|||||..
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 34466789999999973
No 357
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=36.22 E-value=14 Score=35.77 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=13.5
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
.-++++|+.|||||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588899999999963
No 358
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=36.10 E-value=32 Score=32.39 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=15.9
Q ss_pred CC-CEEEEcCCCCCchhhhHH
Q 042373 158 GL-DSVAITETGSGKTLAFLL 177 (494)
Q Consensus 158 gr-dvi~~a~TGSGKTlafll 177 (494)
|+ ++++.++.|+|||...+-
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHH
Confidence 44 688899999999976544
No 359
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=35.89 E-value=31 Score=40.63 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=25.6
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
++-+++|+||+-.-+|..-+..+...+.....++-+|+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 580 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIV 580 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 35679999999888876666667666665544443333
No 360
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=35.77 E-value=21 Score=31.87 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=15.5
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHH
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l 183 (494)
=+++++++|||||. ++--++..+
T Consensus 8 ~i~i~G~sGsGKTT-l~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTT-LLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHH-HHHHHHHHH
T ss_pred EEEEEeCCCCCHHH-HHHHHHHhc
Confidence 36788999999995 333344444
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=35.56 E-value=15 Score=32.66 Aligned_cols=18 Identities=33% Similarity=0.110 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|+-++++|+.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466789999999999973
No 362
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=35.49 E-value=15 Score=34.47 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46677889999999996
No 363
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=35.13 E-value=14 Score=33.32 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|.=+.+++|+|||||..
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356678889999999963
No 364
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=34.83 E-value=14 Score=46.86 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.4
Q ss_pred HHcCCCEEEEcCCCCCchhh
Q 042373 155 IISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTla 174 (494)
+..++.++++||||||||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 45689999999999999963
No 365
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=34.62 E-value=16 Score=37.95 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
.+++++++|+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 47899999999999974
No 366
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=34.60 E-value=12 Score=33.44 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|+-++++|+.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 456688999999999973
No 367
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=34.15 E-value=16 Score=31.74 Aligned_cols=16 Identities=38% Similarity=0.322 Sum_probs=13.7
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+.++++++.|||||..
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999963
No 368
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=34.11 E-value=14 Score=32.37 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|.-++++++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466788999999999973
No 369
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.05 E-value=22 Score=39.19 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
..++++++|+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999743
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=34.01 E-value=15 Score=32.01 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.9
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-++++++.|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 371
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=33.99 E-value=15 Score=33.25 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=13.2
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
.-+.+++++|||||..
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577889999999973
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=33.82 E-value=15 Score=33.07 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=12.8
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
++++|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999743
No 373
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=33.66 E-value=16 Score=31.62 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
+++++++..|||||...
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999743
No 374
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=33.63 E-value=15 Score=31.99 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=12.7
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-++++|+.|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999963
No 375
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=33.32 E-value=15 Score=31.96 Aligned_cols=19 Identities=21% Similarity=-0.057 Sum_probs=11.0
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.+.-++++++.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567889999999999743
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=33.18 E-value=16 Score=33.39 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
+.-++++|++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46689999999999973
No 377
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=33.10 E-value=19 Score=31.53 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.7
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
.-++++++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999974
No 378
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=33.08 E-value=29 Score=33.96 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
++-+++++++|+|||...
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 445778899999999643
No 379
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=33.07 E-value=18 Score=32.84 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
+.-++++|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999743
No 380
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=32.92 E-value=18 Score=31.13 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=13.6
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+-++++++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999973
No 381
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=32.91 E-value=15 Score=33.87 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.+..++++++.|||||..
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 346799999999999963
No 382
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=32.87 E-value=16 Score=33.19 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=12.8
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
=.++++++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3577899999999743
No 383
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=32.82 E-value=17 Score=32.98 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
+..++++++.|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999973
No 384
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=32.71 E-value=17 Score=32.50 Aligned_cols=15 Identities=20% Similarity=0.198 Sum_probs=12.6
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-+.++++.|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367889999999973
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=32.31 E-value=17 Score=32.85 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.8
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
.++++|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999974
No 386
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=32.18 E-value=27 Score=35.15 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=17.6
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.-+.+++++|||||... -.|..++
T Consensus 156 ~g~vi~lvG~nGsGKTTll--~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSL--GKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHH--HHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH--HHHHhhc
Confidence 3455778899999999743 3344443
No 387
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=32.01 E-value=17 Score=33.76 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
+.-++++|++|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46788999999999973
No 388
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=31.97 E-value=17 Score=32.55 Aligned_cols=17 Identities=29% Similarity=0.053 Sum_probs=13.9
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.+.-+.+++++|||||.
T Consensus 20 ~~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTT 36 (207)
T ss_dssp CCEEEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35567788999999996
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=31.92 E-value=22 Score=32.12 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=18.6
Q ss_pred ccceEEEEEcccchhc--ccCChhHHHHHHH
Q 042373 231 LTRVTYLVLDEADRMF--DMGFEPQITRIVQ 259 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml--~~gf~~~i~~Il~ 259 (494)
+...+++|+||++.|- +..|...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 4567899999998883 3334444444443
No 390
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=31.77 E-value=16 Score=32.18 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|.-++++++.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567889999999999743
No 391
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=31.21 E-value=18 Score=32.21 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=13.2
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+-++++|+.|||||..
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3478889999999973
No 392
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=31.05 E-value=19 Score=33.69 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678889999999996
No 393
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=30.91 E-value=20 Score=32.03 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=13.6
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
.-++++++.|||||..
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588899999999974
No 394
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=30.90 E-value=19 Score=32.27 Aligned_cols=14 Identities=36% Similarity=0.249 Sum_probs=12.0
Q ss_pred EEEEcCCCCCchhh
Q 042373 161 SVAITETGSGKTLA 174 (494)
Q Consensus 161 vi~~a~TGSGKTla 174 (494)
+.+.|+.|||||..
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999973
No 395
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=30.82 E-value=78 Score=31.18 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=15.9
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+.+.|++|||||.. +-+|..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 56669999999974 344555554
No 396
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=30.74 E-value=19 Score=32.07 Aligned_cols=19 Identities=26% Similarity=0.020 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|+-++++|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667899999999999743
No 397
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=30.56 E-value=37 Score=40.04 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=18.1
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
+-+++|+||+-.-+|......+...+...
T Consensus 1189 ~p~iLiLDEpTs~lD~~~~~~i~~~l~~~ 1217 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDTESEKVVQEALDKA 1217 (1284)
T ss_dssp CCSSEEEESCSSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 44577777777766665555555555544
No 398
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=30.41 E-value=22 Score=32.87 Aligned_cols=17 Identities=29% Similarity=0.155 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999997
No 399
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=30.28 E-value=18 Score=35.60 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.5
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
.++++|+|+|||..+
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468899999999753
No 400
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=29.93 E-value=21 Score=31.89 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|.-++++++.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677899999999999743
No 401
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=29.78 E-value=20 Score=30.74 Aligned_cols=15 Identities=27% Similarity=0.098 Sum_probs=12.7
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
.++++++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378899999999973
No 402
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.63 E-value=20 Score=46.15 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.3
Q ss_pred HHHcCCCEEEEcCCCCCchh
Q 042373 154 LIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTl 173 (494)
.+..|+.++++||||+|||.
T Consensus 1300 ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1300 WLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHHTTCCCEEESSTTSSHHH
T ss_pred HHHCCCcEEEECCCCCCHHH
Confidence 34577999999999999995
No 403
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=29.57 E-value=20 Score=31.63 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=12.2
Q ss_pred EEEEcCCCCCchhh
Q 042373 161 SVAITETGSGKTLA 174 (494)
Q Consensus 161 vi~~a~TGSGKTla 174 (494)
+++.|+.|||||..
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67899999999973
No 404
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=29.36 E-value=21 Score=33.15 Aligned_cols=17 Identities=35% Similarity=0.347 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46777899999999997
No 405
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=29.28 E-value=35 Score=35.81 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=30.2
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|..+.+.+-||||||++..- ++... +..+|||+|+..+|.|+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~~-----------~~p~lvv~~~~~~A~~l 55 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAERH-----------AGPVVLIAPDMQNALRL 55 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHHS-----------SSCEEEEESSHHHHHHH
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHHh-----------CCCEEEEeCCHHHHHHH
Confidence 456788899999999874221 12111 23489999999999986
No 406
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=29.24 E-value=20 Score=31.25 Aligned_cols=14 Identities=36% Similarity=0.219 Sum_probs=12.1
Q ss_pred EEEEcCCCCCchhh
Q 042373 161 SVAITETGSGKTLA 174 (494)
Q Consensus 161 vi~~a~TGSGKTla 174 (494)
++++|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999963
No 407
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=29.00 E-value=21 Score=32.10 Aligned_cols=17 Identities=29% Similarity=-0.048 Sum_probs=13.2
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
.=+.+++++|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34677899999999743
No 408
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=28.66 E-value=22 Score=32.92 Aligned_cols=17 Identities=35% Similarity=0.390 Sum_probs=14.2
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45667788999999996
No 409
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=28.60 E-value=22 Score=33.64 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46677889999999997
No 410
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=28.58 E-value=39 Score=33.25 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
++-+++++++|+|||...
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455778899999999644
No 411
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=28.45 E-value=21 Score=31.51 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=12.4
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-+.+++++|||||..
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999973
No 412
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=28.31 E-value=22 Score=34.26 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.4
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.=+.+++|+|||||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46667889999999997
No 413
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=28.28 E-value=23 Score=32.22 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
+..++++++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999973
No 414
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=28.10 E-value=23 Score=33.15 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.4
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46667889999999997
No 415
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=27.84 E-value=22 Score=31.15 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=12.5
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999743
No 416
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=27.64 E-value=23 Score=33.82 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.4
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46667889999999997
No 417
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=27.58 E-value=27 Score=33.22 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778899999999997
No 418
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=27.53 E-value=24 Score=33.62 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.3
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45667888999999997
No 419
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=27.45 E-value=23 Score=33.43 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
.-++++|+.|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45789999999999743
No 420
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=27.38 E-value=27 Score=32.89 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46777889999999997
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=27.27 E-value=23 Score=32.01 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=12.8
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
.++++++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999973
No 422
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=27.23 E-value=24 Score=33.10 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|.-+.+.+++|||||..
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356678889999999973
No 423
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=26.99 E-value=24 Score=32.09 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|+-++++++.|+|||..
T Consensus 15 ~G~gvli~G~SGaGKStl 32 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSEL 32 (181)
T ss_dssp TTEEEEEEESSSSSHHHH
T ss_pred CCEEEEEEcCCCCCHHHH
Confidence 467899999999999953
No 424
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=26.84 E-value=2.6e+02 Score=24.52 Aligned_cols=56 Identities=13% Similarity=-0.244 Sum_probs=10.1
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCC----CCCCCCCCeEEEEccchhHHH
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPP----VVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~----~~~~~~~p~aLIl~PTreLa~ 209 (494)
..+.|-.+-+.+..|-|=|+.+.+|+...-..... ......+.++||+-.......
T Consensus 16 ~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~ 75 (206)
T 3mm4_A 16 RGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRK 75 (206)
T ss_dssp ---------------------------------------CTTTTTTCEEEEECSCHHHHH
T ss_pred ccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHH
Confidence 44556678888999999999999997543221111 011122457777776544443
No 425
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=26.54 E-value=25 Score=33.52 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 45 ~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST 61 (267)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46677889999999997
No 426
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=26.51 E-value=26 Score=33.44 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.4
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46667788999999997
No 427
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=26.41 E-value=26 Score=33.20 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46667889999999997
No 428
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=26.39 E-value=18 Score=33.95 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
+.-++++|++|||||..
T Consensus 32 ~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTI 48 (253)
T ss_dssp CEEEEEESCGGGTTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999973
No 429
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=26.29 E-value=24 Score=32.41 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=12.1
Q ss_pred EEEEcCCCCCchhh
Q 042373 161 SVAITETGSGKTLA 174 (494)
Q Consensus 161 vi~~a~TGSGKTla 174 (494)
+++.+|+||||+..
T Consensus 3 Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68889999999863
No 430
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=26.15 E-value=26 Score=33.18 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=14.3
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45667788999999997
No 431
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=26.07 E-value=26 Score=33.52 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46677889999999997
No 432
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.97 E-value=26 Score=33.26 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+.+|+|||||.
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46667889999999997
No 433
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=25.96 E-value=38 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
|.=+.+.|++|||||.. +-+|..++
T Consensus 90 g~ivgI~G~sGsGKSTL--~~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTT--ARVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CEEEEEECCCCchHHHH--HHHHHhhc
Confidence 34456779999999973 33444444
No 434
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=25.87 E-value=17 Score=32.32 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=12.2
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
+.+++++|||||...
T Consensus 5 v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEESCHHHHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999643
No 435
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=25.79 E-value=25 Score=32.90 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46667889999999997
No 436
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.65 E-value=27 Score=34.10 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=0.0
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
.++++++|+|||...
T Consensus 27 ~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 27 TAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEECCTTTCSTHHH
T ss_pred EEEECCCCCcHHHHH
No 437
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=25.45 E-value=51 Score=38.42 Aligned_cols=54 Identities=19% Similarity=0.092 Sum_probs=37.2
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCC---CCCCCCCeEEEEccchhHHHhh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPV---VPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~---~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|. .++.|.-|||||.+-.--+++.+...... ...-.-...|+|+=|+.-|..+
T Consensus 16 ~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EM 72 (1180)
T 1w36_B 16 QGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 (1180)
T ss_dssp SSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHH
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHH
Confidence 344 49999999999998887778777642100 0001123699999998888776
No 438
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=25.31 E-value=28 Score=33.30 Aligned_cols=17 Identities=41% Similarity=0.517 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 46667889999999997
No 439
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=25.25 E-value=26 Score=31.63 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.0
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
.-+.+.++.|||||..
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3477889999999973
No 440
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=25.15 E-value=55 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCCchhhhH
Q 042373 159 LDSVAITETGSGKTLAFL 176 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafl 176 (494)
+.+++++++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 578899999999996543
No 441
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=25.12 E-value=32 Score=32.42 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 28 ~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKST 44 (250)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46667889999999997
No 442
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=25.06 E-value=26 Score=32.03 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=12.3
Q ss_pred EEEEcCCCCCchhh
Q 042373 161 SVAITETGSGKTLA 174 (494)
Q Consensus 161 vi~~a~TGSGKTla 174 (494)
+++.++.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999973
No 443
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=24.99 E-value=24 Score=31.24 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.4
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+++++++|+|||.
T Consensus 25 ~~~~v~lvG~~g~GKST 41 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSS 41 (210)
T ss_dssp CSEEEEEEECTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 35568999999999996
No 444
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=24.97 E-value=35 Score=30.76 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
|.-+.+++++|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 345788999999999743
No 445
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=24.87 E-value=28 Score=33.51 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 46 ~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT 62 (279)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46667889999999997
No 446
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=24.64 E-value=38 Score=38.57 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
|+=+++.||+|+|||...
T Consensus 662 g~i~~ItGpNGsGKSTlL 679 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYI 679 (934)
T ss_dssp BCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788899999999654
No 447
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=24.58 E-value=28 Score=32.32 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=13.4
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
|.=+-+.+|+|||||...
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 334567799999999743
No 448
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=24.46 E-value=27 Score=32.50 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
+.-++++++.|||||..
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999974
No 449
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=24.36 E-value=28 Score=32.70 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=11.3
Q ss_pred EEEEcCCCCCchh
Q 042373 161 SVAITETGSGKTL 173 (494)
Q Consensus 161 vi~~a~TGSGKTl 173 (494)
+.+++|+|||||.
T Consensus 27 ~~liG~nGsGKST 39 (240)
T 2onk_A 27 CVLLGPTGAGKSV 39 (240)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5577999999997
No 450
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=24.28 E-value=73 Score=30.81 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCCchhhhH
Q 042373 158 GLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafl 176 (494)
++-+++++++|+|||....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567778999999996443
No 451
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=23.96 E-value=28 Score=32.35 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=13.0
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+=+++.+|+||||+..
T Consensus 30 kiI~llGpPGsGKgTq 45 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQ 45 (217)
T ss_dssp EEEEEECCTTCCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4467889999999864
No 452
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=23.71 E-value=28 Score=30.52 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=17.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.=+.+++|.|+|||. ++-++..+.
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 45557788999999996 333444443
No 453
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=23.71 E-value=34 Score=30.78 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
+.-+.++++.|||||..
T Consensus 3 ~~~i~i~G~~gsGkst~ 19 (219)
T 2h92_A 3 AINIALDGPAAAGKSTI 19 (219)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999974
No 454
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=23.65 E-value=29 Score=33.00 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=13.2
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
-++++++.|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999743
No 455
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=23.54 E-value=28 Score=28.95 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=12.5
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 3 ki~v~G~~~~GKSs 16 (161)
T 2dyk_A 3 KVVIVGRPNVGKSS 16 (161)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999995
No 456
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=23.45 E-value=68 Score=29.48 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=12.4
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
-+++.++.|+|||..
T Consensus 16 i~~~~GkgGvGKTTl 30 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTL 30 (262)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEeCCCCCCHHHH
Confidence 467789999999964
No 457
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=23.15 E-value=29 Score=28.75 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=12.6
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (166)
T 2ce2_X 5 KLVVVGAGGVGKSA 18 (166)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999996
No 458
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=23.07 E-value=29 Score=33.21 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=12.2
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.+.++|++|+|||.
T Consensus 4 ~v~lvG~nGaGKST 17 (270)
T 3sop_A 4 NIMVVGQSGLGKST 17 (270)
T ss_dssp EEEEEESSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46789999999996
No 459
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=22.93 E-value=48 Score=34.76 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=20.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.-+++++++|||||....+-++..+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999755543344443
No 460
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=22.78 E-value=73 Score=31.43 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.2
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
-+++++++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999643
No 461
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=22.40 E-value=31 Score=28.87 Aligned_cols=14 Identities=21% Similarity=0.314 Sum_probs=12.6
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 7 ~i~v~G~~~~GKss 20 (168)
T 1z2a_A 7 KMVVVGNGAVGKSS 20 (168)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 57899999999996
No 462
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=22.37 E-value=87 Score=31.38 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=27.1
Q ss_pred HHHHHhCCCCCC-----ChhHHHHHHHHHcCCCEEEEcCCCCCchh
Q 042373 133 LETFSKLNHENP-----VAIQAPASALIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 133 l~~l~~~g~~~p-----tpiQ~~aip~il~grdvi~~a~TGSGKTl 173 (494)
+..+...||.-. +..-..-+...+.|+-+.+++++|+|||.
T Consensus 185 ~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKST 230 (358)
T 2rcn_A 185 MDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSS 230 (358)
T ss_dssp HHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTSSHHH
T ss_pred HHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCccHHH
Confidence 344556777421 12223344556789999999999999996
No 463
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=22.14 E-value=33 Score=33.27 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=11.7
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
+.++|++|||||...
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999643
No 464
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=22.10 E-value=33 Score=30.98 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=24.4
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR 214 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP 214 (494)
-+.+++..|||||...- ++...+ | +.+..+-.++.++..|
T Consensus 14 iIgltG~~GSGKSTva~--~L~~~l----------g---~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE--ILKNKY----------G---AHVVNVDRIGHEVLEE 53 (192)
T ss_dssp EEEEECSTTSSHHHHHH--HHHHHH----------C---CEEEEHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH--HHHHhc----------C---CEEEECcHHHHHHHHH
Confidence 35677999999997432 222211 2 4455677777776554
No 465
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=21.89 E-value=34 Score=30.12 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=12.3
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 7 kv~lvG~~g~GKST 20 (199)
T 2f9l_A 7 KVVLIGDSGVGKSN 20 (199)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 47889999999996
No 466
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=21.86 E-value=17 Score=32.52 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=12.0
Q ss_pred EEEEcCCCCCchhh
Q 042373 161 SVAITETGSGKTLA 174 (494)
Q Consensus 161 vi~~a~TGSGKTla 174 (494)
++++|+.|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67889999999963
No 467
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=21.81 E-value=35 Score=29.63 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=13.4
Q ss_pred CCEEEEcCCCCCchh
Q 042373 159 LDSVAITETGSGKTL 173 (494)
Q Consensus 159 rdvi~~a~TGSGKTl 173 (494)
..++++|++|+|||.
T Consensus 49 ~~i~vvG~~g~GKSs 63 (193)
T 2ged_A 49 PSIIIAGPQNSGKTS 63 (193)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 478999999999995
No 468
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=21.74 E-value=43 Score=33.44 Aligned_cols=31 Identities=29% Similarity=0.220 Sum_probs=21.4
Q ss_pred ceEEEEEcccchhcccC---ChhHHHHHHHhhcC
Q 042373 233 RVTYLVLDEADRMFDMG---FEPQITRIVQNIRP 263 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~g---f~~~i~~Il~~l~~ 263 (494)
+-.++|+||||.++... +...+..+++..|+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk 295 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK 295 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh
Confidence 34689999999999632 44556666666654
No 469
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=21.63 E-value=40 Score=32.68 Aligned_cols=17 Identities=35% Similarity=0.347 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 63 ~Ge~~~i~G~NGsGKST 79 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTS 79 (290)
T ss_dssp TTCEEEEEESTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46677889999999997
No 470
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=21.27 E-value=36 Score=30.04 Aligned_cols=16 Identities=19% Similarity=0.007 Sum_probs=12.6
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
-+.+.++.|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999743
No 471
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=21.20 E-value=39 Score=31.05 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.+.-+.++++.|||||...
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456788999999999743
No 472
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=21.13 E-value=36 Score=29.56 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=13.5
Q ss_pred CCEEEEcCCCCCchh
Q 042373 159 LDSVAITETGSGKTL 173 (494)
Q Consensus 159 rdvi~~a~TGSGKTl 173 (494)
-.++++|.+|+|||.
T Consensus 22 ~ki~v~G~~~~GKSs 36 (190)
T 2h57_A 22 VHVLCLGLDNSGKTT 36 (190)
T ss_dssp EEEEEEECTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 478999999999996
No 473
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.93 E-value=37 Score=30.23 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=13.4
Q ss_pred CCEEEEcCCCCCchh
Q 042373 159 LDSVAITETGSGKTL 173 (494)
Q Consensus 159 rdvi~~a~TGSGKTl 173 (494)
..+++++++|+|||.
T Consensus 13 ~~i~~~G~~g~GKTs 27 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTS 27 (218)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 468999999999995
No 474
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=20.93 E-value=40 Score=32.12 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=18.8
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhhc
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNIR 262 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~ 262 (494)
+-+++++||.-.-+|......+..++..+.
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhc
Confidence 345777777766666655566666665553
No 475
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=20.86 E-value=34 Score=28.63 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=12.6
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 8 ~i~v~G~~~~GKSs 21 (170)
T 1z0j_A 8 KVCLLGDTGVGKSS 21 (170)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 58899999999995
No 476
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=20.83 E-value=1.3e+02 Score=29.59 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=29.5
Q ss_pred CCHHHHHHHHhCCCC-----CCChhHHHHHHH-HHc----------------CCCEEEEcCCCCCchh
Q 042373 128 LTTKILETFSKLNHE-----NPVAIQAPASAL-IIS----------------GLDSVAITETGSGKTL 173 (494)
Q Consensus 128 L~~~ll~~l~~~g~~-----~ptpiQ~~aip~-il~----------------grdvi~~a~TGSGKTl 173 (494)
.++.+++..++.|+. .+|.--...+-. +.. |+-+++.++.|+|||.
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt 159 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSE 159 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHH
Confidence 477888888887764 222222222222 222 7889999999999964
No 477
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=20.82 E-value=33 Score=31.49 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=13.2
Q ss_pred CCCEEEEcCCCCCchh
Q 042373 158 GLDSVAITETGSGKTL 173 (494)
Q Consensus 158 grdvi~~a~TGSGKTl 173 (494)
|.-+.+.++.|||||.
T Consensus 20 g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CEEEEEECSTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4456788999999997
No 478
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=20.79 E-value=37 Score=29.83 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=12.4
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
-+++++++|+|||.
T Consensus 31 kv~lvG~~g~GKST 44 (191)
T 1oix_A 31 KVVLIGDSGVGKSN 44 (191)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 47889999999996
No 479
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=20.79 E-value=35 Score=28.61 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=12.5
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (170)
T 1g16_A 5 KILLIGDSGVGKSC 18 (170)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 47899999999995
No 480
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=20.72 E-value=35 Score=28.99 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=12.8
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 10 ~i~v~G~~~~GKSs 23 (182)
T 1ky3_A 10 KVIILGDSGVGKTS 23 (182)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 68999999999995
No 481
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.63 E-value=35 Score=28.48 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=12.6
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (170)
T 1ek0_A 5 KLVLLGEAAVGKSS 18 (170)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999996
No 482
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=20.52 E-value=61 Score=30.98 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=22.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
|..+++.+.+|+||| .+.+-.+..-..+ |-.+++++-
T Consensus 21 gs~~li~g~p~~~~~-~l~~qfl~~g~~~--------Ge~~~~~~~ 57 (260)
T 3bs4_A 21 SLILIHEEDASSRGK-DILFYILSRKLKS--------DNLVGMFSI 57 (260)
T ss_dssp CEEEEEECSGGGCHH-HHHHHHHHHHHHT--------TCEEEEEEC
T ss_pred CcEEEEEeCCCccHH-HHHHHHHHHHHHC--------CCcEEEEEE
Confidence 456777778888888 5555454443332 456777763
No 483
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=20.46 E-value=39 Score=34.18 Aligned_cols=17 Identities=24% Similarity=-0.013 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|+-+++++|+|+|||.
T Consensus 168 ~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp TCCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45778899999999996
No 484
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=20.45 E-value=37 Score=32.93 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=15.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~ 184 (494)
=+.+.|++|||||.. +-+|..++
T Consensus 82 iigI~G~~GsGKSTl--~~~L~~~l 104 (308)
T 1sq5_A 82 IISIAGSVAVGKSTT--ARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHH
Confidence 355679999999973 33444443
No 485
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=20.35 E-value=37 Score=31.56 Aligned_cols=16 Identities=25% Similarity=0.023 Sum_probs=12.8
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
-+.+.++.|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999743
No 486
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=20.20 E-value=36 Score=28.23 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.7
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 5 ~i~v~G~~~~GKSs 18 (167)
T 1kao_A 5 KVVVLGSGGVGKSA 18 (167)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 58899999999995
No 487
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=20.15 E-value=37 Score=28.23 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=12.7
Q ss_pred CEEEEcCCCCCchh
Q 042373 160 DSVAITETGSGKTL 173 (494)
Q Consensus 160 dvi~~a~TGSGKTl 173 (494)
.++++|++|+|||.
T Consensus 6 ~i~v~G~~~~GKss 19 (168)
T 1u8z_A 6 KVIMVGSGGVGKSA 19 (168)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 58999999999996
Done!