BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042374
(714 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 4 QIVIPVFYHVDPSDVRKQSGSFGEAFVEYEKNFP-HKVQKWRDALTEASNSTDLDGF-VG 61
+I++P+FY VDPSDVR Q+G + +AF ++ F +Q W+DAL + DL G+ +G
Sbjct: 124 RIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVG---DLKGWHIG 180
Query: 62 LNSR 65
N +
Sbjct: 181 KNDK 184
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 6 VIPVFYHVDPSDVRKQSGSFGEAFVEY-EKNFPHKVQKWRDALT 48
V+P+FY V+P+ VR Q+G E F ++ + P KV KWR ALT
Sbjct: 98 VMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALT 141
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 79/196 (40%), Gaps = 18/196 (9%)
Query: 501 TINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTS 560
TI+ G L + Q + L L ++ +P+S+ L L+ LS+ CP L +
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 561 ILKLKSL---QNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQ 617
+ + Q L +Q LE N L KIR P S
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL---------SA 220
Query: 618 LPSSVADTNDLEGLSL----YLRNY-ALNGCLSSLEYLDLSG-NDFESLPASIKQLSRLR 671
L ++ LE L L LRNY + G + L+ L L ++ +LP I +L++L
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 672 KLHLCYCDKLQSIPEL 687
KL L C L +P L
Sbjct: 281 KLDLRGCVNLSRLPSL 296
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 421 WGGKRLLSSKFIDLSHSQYL-IRM-------PDLSEAPNLERINLLNCTNLVSVPSSIQN 472
W G R L + +L + + L IR P + P LE ++L CT L + P
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 473 FNHLSMLCFEGCKSLRSFPSNLHFVCPV-TINCGGCVNLTEFPQI 516
L L + C +L + P ++H + + ++ GCVNL+ P +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 33/114 (28%)
Query: 573 IQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLS 632
++ L FP+ ++ +L + + + ELP T ++ G
Sbjct: 88 LRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAG------------------- 128
Query: 633 LYLRNYALNGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE 686
LE L L+ N +LPASI L+RLR+L + C +L +PE
Sbjct: 129 --------------LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE 168
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 452 LERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINC 504
L+R+ L +C+NL+++P I L L GC +L PS + + NC
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS---LIAQLPANC 304
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 26/230 (11%)
Query: 83 VGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREES----NKMGAIHVRDEVISQVL 138
V I GM G GK+ +A+ S +G CF V S +K G + + +++
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSL-LEG-CFPGGVHWVSVGKQDKSGLLMKLQNLCTRLD 207
Query: 139 GDKNLKIGTLVIHQNIRKRLR------QVKMLIVLDAVHDGFTQLESLAGELDKFTTGSR 192
D++ + + + RLR + L++LD V D + L F + +
Sbjct: 208 QDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWV--------LKAFDSQCQ 259
Query: 193 IIITTRDKQVLDKC-GVNYVYEVE-GLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHY 250
I++TTRDK V D G YV VE L K E+ + N D + ++
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEIL---SLFVNMKKADLPEQAHSIIKE 316
Query: 251 ARNNPLALEVLGSSLYQKSKQQWEDRLHNLRLISEPNIYKVLKISYDELN 300
+ +PL + ++G +L + +WE L L+ I K Y+ L+
Sbjct: 317 CKGSPLVVSLIG-ALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALD 365
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 26/230 (11%)
Query: 83 VGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREES----NKMGAIHVRDEVISQVL 138
V I GM G GK+ +A+ S +G CF V S +K G + + +++
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSL-LEG-CFPGGVHWVSVGKQDKSGLLMKLQNLCTRLD 213
Query: 139 GDKNLKIGTLVIHQNIRKRLR------QVKMLIVLDAVHDGFTQLESLAGELDKFTTGSR 192
D++ + + + RLR + L++LD V D + L F + +
Sbjct: 214 QDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWV--------LKAFDSQCQ 265
Query: 193 IIITTRDKQVLDKC-GVNYVYEVE-GLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHY 250
I++TTRDK V D G YV VE L K E+ + N D + ++
Sbjct: 266 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEIL---SLFVNMKKADLPEQAHSIIKE 322
Query: 251 ARNNPLALEVLGSSLYQKSKQQWEDRLHNLRLISEPNIYKVLKISYDELN 300
+ +PL + ++G +L + +WE L L+ I K Y+ L+
Sbjct: 323 CKGSPLVVSLIG-ALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALD 371
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 40/259 (15%)
Query: 470 IQNFNHLSMLCFEG--CKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWE 527
+QN + L ++ + K L P +L F+ G L E P++ + +
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA------AGNNQLEELPELQN-----LPFL 197
Query: 528 TAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFD--LENFPEIL 585
TAI +S+ L +L LSL I + +L++L L I + L+ P++
Sbjct: 198 TAIYADNNSLKKLPDLP-LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLP 256
Query: 586 EKMEYLNYNALGRTKIRELPSTFEKGEGTE------SQLPSSV----ADTNDLEGLSLYL 635
+E LN T + ELP + + +E S+LP ++ A +N++ L
Sbjct: 257 PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC--- 313
Query: 636 RNYALNGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPELPLSLKWLD 695
SLE L++S N LPA +L RL + + L +PELP +LK L
Sbjct: 314 ------DLPPSLEELNVSNNKLIELPALPPRLERL----IASFNHLAEVPELPQNLKQLH 363
Query: 696 ASNCERLQTFPEISSYLEE 714
L+ FP+I +E+
Sbjct: 364 VE-YNPLREFPDIPESVED 381
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 97/245 (39%), Gaps = 71/245 (28%)
Query: 483 GCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTN 542
G SL P +L + C +LTE P++ S+ L++ N
Sbjct: 82 GLSSLPELPPHLESLV------ASCNSLTELPELPQSLKSLLVDNN-------------N 122
Query: 543 LKVLSLSQCPRLKRISTS---ILKLKSLQNLYLIQCFDLEN-----FPEILEKMEYLNYN 594
LK LS P L+ + S + KL LQN ++ D++N P++ +E++
Sbjct: 123 LKALS-DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI--- 178
Query: 595 ALGRTKIRELP---------------STFEKGEGTESQLPSSVADTNDLEGLSLYLRN-- 637
A G ++ ELP ++ +K L S VA N LE L L+N
Sbjct: 179 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLP 237
Query: 638 -----YALNGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPELPLSLK 692
YA N L +L LP S++ L+ + L +PELP SL
Sbjct: 238 FLTTIYADNNLLKTLP----------DLPPSLEALN-------VRDNYLTDLPELPQSLT 280
Query: 693 WLDAS 697
+LD S
Sbjct: 281 FLDVS 285
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 640 LNGCLSSLEY-LDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPELPLSLKWL--DA 696
L CL + L+L+ SLP L L + C+ L +PELP SLK L D
Sbjct: 65 LRDCLDRQAHELELNNLGLSSLPELPPHLESL----VASCNSLTELPELPQSLKSLLVDN 120
Query: 697 SNCERLQTFPEISSYL 712
+N + L P + YL
Sbjct: 121 NNLKALSDLPPLLEYL 136
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 26/230 (11%)
Query: 83 VGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREES----NKMGAIHVRDEVISQVL 138
V I+GM G GK+ +A+ S +G CF V S +K G + + ++
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSL-LEG-CFSGGVHWVSIGKQDKSGLLMKLQNLCMRLD 207
Query: 139 GDKNLKIGTLVIHQNIRKRLRQV------KMLIVLDAVHDGFTQLESLAGELDKFTTGSR 192
+++ + + + RLR + + L++LD V D + L F +
Sbjct: 208 QEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV--------LKAFDNQCQ 259
Query: 193 IIITTRDKQVLDKC-GVNYVYEVE-GLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHY 250
I++TTRDK V D G +V VE GL K E+ + N D + ++
Sbjct: 260 ILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL---SLFVNMKKEDLPAEAHSIIKE 316
Query: 251 ARNNPLALEVLGSSLYQKSKQQWEDRLHNLRLISEPNIYKVLKISYDELN 300
+ +PL + ++G +L + +W L L+ I K Y+ L+
Sbjct: 317 CKGSPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 365
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 26/230 (11%)
Query: 83 VGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREES----NKMGAIHVRDEVISQVL 138
V I+GM G GK+ +A+ S +G CF V S +K G + + ++
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSL-LEG-CFSGGVHWVSIGKQDKSGLLMKLQNLCMRLD 214
Query: 139 GDKNLKIGTLVIHQNIRKRLRQV------KMLIVLDAVHDGFTQLESLAGELDKFTTGSR 192
+++ + + + RLR + + L++LD V D + L F +
Sbjct: 215 QEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV--------LKAFDNQCQ 266
Query: 193 IIITTRDKQVLDKC-GVNYVYEVE-GLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHY 250
I++TT DK V D G +V VE GL K E+ + N D + ++
Sbjct: 267 ILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEIL---SLFVNMKKEDLPAEAHSIIKE 323
Query: 251 ARNNPLALEVLGSSLYQKSKQQWEDRLHNLRLISEPNIYKVLKISYDELN 300
+ +PL + ++G +L + +W L L+ I K Y+ L+
Sbjct: 324 CKGSPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 372
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 10/55 (18%)
Query: 660 LPASIKQLSRLRKLHLCYCD-KLQSIPELPLSLKWLDASNCERLQTFPEISSYLE 713
LPAS++ +L CD +L ++PELP SLK LD N +L PE+ + LE
Sbjct: 98 LPASLE--------YLDACDNRLSTLPELPASLKHLDVDN-NQLTXLPELPALLE 143
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 679 DKLQSIPELPLSLKWLDASNCERLQTFPEISSYLE 713
+ L S+PELP SL++LDA + RL T PE+ + L+
Sbjct: 90 NALISLPELPASLEYLDACD-NRLSTLPELPASLK 123
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 644 LSSLEYLDLSGNDFESLPASI-KQLSRLRKLHLCYCDKLQSIPE 686
L++L YL+L+ N +SLP + +L+ L +L L Y ++LQS+PE
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPE 174
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 40/156 (25%)
Query: 535 SSVGCLTNLKVLSLSQCPRLKRISTSIL-KLKSLQNLYLIQCFDLENFPE-ILEKMEYLN 592
S++ LTNL L L+ +L+ + + KL +L+ L L++ L++ P+ + +K+ L
Sbjct: 79 SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLT 136
Query: 593 YNALGRTKIRELP-STFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLD 651
Y L +++ LP F+K L++L LD
Sbjct: 137 YLNLAHNQLQSLPKGVFDK---------------------------------LTNLTELD 163
Query: 652 LSGNDFESLPASI-KQLSRLRKLHLCYCDKLQSIPE 686
LS N +SLP + +L++L+ L L Y ++L+S+P+
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRL-YQNQLKSVPD 198
>pdb|3NTX|A Chain A, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
pdb|3NTX|B Chain B, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
Length = 341
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 23/144 (15%)
Query: 491 PSNLHFVCPVTINCGGCVNLTEFPQISGSVTK---------LILWETAIKEVPSSVGCLT 541
P +H + P I +T +P ISG+V + LIL + P L
Sbjct: 204 PLIVHRITPQPIGV-----VTIYPGISGAVVRNFLLQPVKALILRSYGVGNAPQKAELLD 258
Query: 542 NLK--------VLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNY 593
LK V++L+QC +L +I FD L K+ YL
Sbjct: 259 ELKNASDRGIVVVNLTQCISGSVNXGGYATGNALAQAGVISGFD-XTVEAALTKLHYLLS 317
Query: 594 NALGRTKIRELPSTFEKGEGTESQ 617
+L +IR+L +GE T++Q
Sbjct: 318 QSLSPNEIRQLXQQNLRGELTDTQ 341
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 644 LSSLEYLDLSGNDFESLPASI-KQLSRLRKLHLCYCDKLQSIPE 686
L+SL YL+LS N +SLP + +L++L++L L ++LQS+P+
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-NTNQLQSLPD 117
>pdb|2CIU|A Chain A, Structure Of The Ims Domain Of The Mitochondrial Import
Protein Tim21 From S. Cerevisiae
Length = 127
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 172 DGFTQLESLA--GEL---DKFTTGSRIIITTRDKQVLDKCGVNYVYEVEGLEHNKAFELF 226
DG T E L GEL DK+T I+ T + LDK G + Y +E K L
Sbjct: 32 DGITGKERLKAYGELITNDKWTRNRPIVSTKK----LDKEGRTHHYMRFHVESKKKIALV 87
Query: 227 YRKAFR-QNNYPPDFLGLSLEV 247
+ +A + NY PDF+ + ++V
Sbjct: 88 HLEAKESKQNYQPDFINMYVDV 109
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 647 LEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIP 685
L L L+GN LPA IK LS LR L L + ++L S+P
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 83 VGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNK 123
+G++G G+GKT + + H I++ G A V E + +
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTRE 194
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 10/155 (6%)
Query: 253 NNPLALEVLGSSLYQKSKQQWEDRLHNLRLISEPNIYKVLKISYDELNSKEKEMFLDIAC 312
NN LA LGS+ ++K++ W+ + + +++ N ++ Y ++S KE D
Sbjct: 775 NNDLA-STLGSTRFEKTR--WDGKDKDGKVVV--NGTYTYRVRYTPISSGAKEQHTDFDV 829
Query: 313 FFKGEDLDLGTDNIEGIFLNLSKINDLHLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKV 372
++ T F + L P+ + R+ YM E +P T
Sbjct: 830 IVDNTTPEVAT---SATFSTEDRRLTLASKPKTSQPIYRERIAYTYMDED--LPTTEYIS 884
Query: 373 HLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENL 407
+ G LPEE + PLK F + E++
Sbjct: 885 PNEDGTFTLPEEAETMEGGTVPLKMSDFTYVVEDM 919
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 644 LSSLEYLDLSGNDFESLPASI-KQLSRLRKLHLCYCDKLQSIPE 686
L++L YL L+GN +SLP + +L+ L++L L ++LQS+P+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPD 126
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 644 LSSLEYLDLSGNDFESLPASI-KQLSRLRKLHLCYCDKLQSIP 685
L+ L+ L L GN +SLP+ + +L++L++L L ++LQSIP
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP 147
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 644 LSSLEYLDLSGNDFESLPASI-KQLSRLRKLHLCYCDKLQSIP 685
L+ L+ L L GN +SLP+ + +L++L++L L ++LQSIP
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP 147
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 519 SVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFD 577
S+ L L++ + VP+ + L+ L+ L L P S + ++ SL+ L L +
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 578 LENFPEI-LEKMEYLNYNALGRTKIRELPS-----TFEKGEGTESQL----PSSVADTND 627
LE E E + L Y LG ++++P+ E+ E + ++L P S
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTS 203
Query: 628 LEGLSLY------LRNYALNGCLSSLEYLDLSGNDFESLPASI-KQLSRLRKLHL----- 675
L L L + A + L SLE L+LS N+ SLP + L RL ++HL
Sbjct: 204 LRKLWLMHAQVATIERNAFDD-LKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
Query: 676 -CYCDKL 681
C CD L
Sbjct: 263 HCNCDVL 269
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 16/162 (9%)
Query: 384 ELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRM 443
+L YL E L +P D PE L EL L ++K++ L SK L IRM
Sbjct: 173 KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 444 PD---LSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPV 500
+ LS P L ++L N L VP+ + + L ++ + ++ CPV
Sbjct: 232 IENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTNNITK---VGVNDFCPV 287
Query: 501 TINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTN 542
G V + IS + WE P++ C+T+
Sbjct: 288 ----GFGVKRAYYNGISLFNNPVPYWEVQ----PATFRCVTD 321
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 519 SVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFD 577
S+ L L++ + VP+ + L+ L+ L L P S + ++ SL+ L L +
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 578 LENFPEI-LEKMEYLNYNALGRTKIRELPS-----TFEKGEGTESQL----PSSVADTND 627
LE E E + L Y LG ++++P+ E+ E + ++L P S
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTS 203
Query: 628 LEGLSLYLRNYAL---NGC--LSSLEYLDLSGNDFESLPASI-KQLSRLRKLHL------ 675
L L L A N L SLE L+LS N+ SLP + L RL ++HL
Sbjct: 204 LRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWH 263
Query: 676 CYCDKL 681
C CD L
Sbjct: 264 CNCDVL 269
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCF 113
L+G GL + +EEV++ L R +R++GI G+T +A V Q+ HF K F
Sbjct: 148 LEGVAGLLATLEEVRA--GLNPR-LRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVF 202
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 76 ESRDVRIVGIWGMGGIGKTTIASAVFHQIS 105
E+++ I+GI G GIGKTT A + +I+
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEIT 319
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCF 113
L+G GL + +EEV++ L + +R++GI G+T +A V Q+ HF K F
Sbjct: 148 LEGVAGLLATLEEVRAGL---NPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVF 202
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 644 LSSLEYLDLSGNDFESLPASI-KQLSRLRKLHLCYCDKLQSIPE 686
L+ L YL L N+ +SLP + +L+ L++L L Y ++L+ +PE
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPE 174
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 639 ALNGC---LSSLEYLDLSGNDFES--LPASIKQLSRLRKLHLCYCDKLQSIPELPLSLKW 693
A NG LSSLE L ++GN F+ LP +L L L L C Q P SL
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 694 LDASNCER-----LQTFP 706
L N L TFP
Sbjct: 496 LQVLNMSHNNFFSLDTFP 513
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 639 ALNGC---LSSLEYLDLSGNDFES--LPASIKQLSRLRKLHLCYCDKLQSIPELPLSLKW 693
A NG LSSLE L ++GN F+ LP +L L L L C Q P SL
Sbjct: 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519
Query: 694 LDASNCER-----LQTFP 706
L N L TFP
Sbjct: 520 LQVLNMSHNNFFSLDTFP 537
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,183,451
Number of Sequences: 62578
Number of extensions: 905114
Number of successful extensions: 2252
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2173
Number of HSP's gapped (non-prelim): 114
length of query: 714
length of database: 14,973,337
effective HSP length: 106
effective length of query: 608
effective length of database: 8,340,069
effective search space: 5070761952
effective search space used: 5070761952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)